Query psy8522
Match_columns 78
No_of_seqs 48 out of 50
Neff 2.4
Searched_HMMs 29240
Date Fri Aug 16 21:06:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8522.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8522hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dip_A Delta-sleep-inducing pe 100.0 8E-35 2.7E-39 191.0 -1.5 58 20-77 1-58 (78)
2 2yy0_A C-MYC-binding protein; 97.3 0.00019 6.5E-09 42.7 3.3 44 19-62 2-47 (53)
3 2oqq_A Transcription factor HY 97.2 0.00062 2.1E-08 40.2 4.8 30 34-63 10-39 (42)
4 2jee_A YIIU; FTSZ, septum, coi 96.1 0.031 1.1E-06 36.1 7.0 42 16-62 14-62 (81)
5 1ci6_A Transcription factor AT 96.0 0.015 5E-07 34.9 4.9 34 31-64 27-60 (63)
6 1dh3_A Transcription factor CR 93.1 0.12 4.2E-06 30.3 3.8 29 36-64 24-52 (55)
7 1t2k_D Cyclic-AMP-dependent tr 92.7 0.58 2E-05 27.2 6.3 33 31-63 26-58 (61)
8 2oxj_A Hybrid alpha/beta pepti 92.3 0.18 6.2E-06 28.5 3.6 29 37-65 4-32 (34)
9 1gk7_A Vimentin; intermediate 92.0 0.45 1.5E-05 26.6 5.0 30 33-62 5-34 (39)
10 2yy0_A C-MYC-binding protein; 91.8 0.31 1.1E-05 28.6 4.4 26 31-56 23-48 (53)
11 2dgc_A Protein (GCN4); basic d 91.6 0.23 8E-06 29.7 3.8 23 40-62 29-51 (63)
12 1go4_E MAD1 (mitotic arrest de 91.5 0.38 1.3E-05 31.9 5.0 31 32-62 10-40 (100)
13 1dh3_A Transcription factor CR 91.3 0.53 1.8E-05 27.5 5.0 24 40-63 21-44 (55)
14 1uii_A Geminin; human, DNA rep 91.3 0.43 1.5E-05 31.1 5.1 39 29-67 41-79 (83)
15 1jnm_A Proto-oncogene C-JUN; B 91.2 0.45 1.5E-05 27.8 4.7 31 33-63 28-58 (62)
16 4h22_A Leucine-rich repeat fli 90.7 0.49 1.7E-05 31.8 5.0 34 22-59 22-55 (103)
17 2j5u_A MREC protein; bacterial 90.4 0.14 4.7E-06 36.9 2.3 45 19-65 13-60 (255)
18 3s9g_A Protein hexim1; cyclin 89.6 1.6 5.3E-05 29.6 6.8 41 22-62 34-86 (104)
19 1wlq_A Geminin; coiled-coil; 2 89.5 0.57 1.9E-05 30.5 4.4 37 30-66 34-70 (83)
20 3m48_A General control protein 89.4 0.72 2.5E-05 25.8 4.2 28 38-65 4-31 (33)
21 1jnm_A Proto-oncogene C-JUN; B 89.4 0.5 1.7E-05 27.6 3.8 28 38-65 19-46 (62)
22 1avy_A Fibritin, gpwac M; bact 89.1 1 3.6E-05 29.0 5.4 33 23-55 9-43 (74)
23 1yzm_A FYVE-finger-containing 89.0 1.6 5.5E-05 26.0 5.8 36 21-56 11-50 (51)
24 3a7p_A Autophagy protein 16; c 88.7 1.2 4.2E-05 31.5 6.1 37 24-60 93-129 (152)
25 1t2k_D Cyclic-AMP-dependent tr 88.2 0.68 2.3E-05 26.9 3.8 23 40-62 21-43 (61)
26 2wvr_A Geminin; DNA replicatio 88.1 0.83 2.8E-05 34.0 5.1 38 29-66 110-147 (209)
27 2dgc_A Protein (GCN4); basic d 87.8 1.3 4.5E-05 26.4 5.0 32 34-65 30-61 (63)
28 2wt7_A Proto-oncogene protein 87.7 1.3 4.5E-05 26.0 4.9 31 33-63 29-59 (63)
29 2wt7_A Proto-oncogene protein 87.4 0.8 2.8E-05 26.9 3.8 25 40-64 22-46 (63)
30 3hnw_A Uncharacterized protein 87.0 0.88 3E-05 30.7 4.3 21 36-56 112-132 (138)
31 1gu4_A CAAT/enhancer binding p 86.2 2 6.8E-05 26.9 5.3 32 34-65 43-74 (78)
32 1hjb_A Ccaat/enhancer binding 86.1 1.9 6.6E-05 27.5 5.3 31 33-63 42-72 (87)
33 1z0k_B FYVE-finger-containing 85.9 1.8 6.3E-05 27.1 5.1 36 21-56 29-68 (69)
34 1gu4_A CAAT/enhancer binding p 85.6 1.9 6.5E-05 27.0 5.1 35 30-64 25-59 (78)
35 1gd2_E Transcription factor PA 85.6 1.4 4.9E-05 27.1 4.4 28 36-63 31-58 (70)
36 2jee_A YIIU; FTSZ, septum, coi 85.6 1.7 5.7E-05 28.0 4.8 29 34-62 20-48 (81)
37 3u06_A Protein claret segregat 85.6 1.2 4.2E-05 34.2 4.9 36 31-66 7-42 (412)
38 1uo4_A General control protein 85.1 1.8 6.2E-05 24.3 4.2 28 38-65 5-32 (34)
39 3s4r_A Vimentin; alpha-helix, 84.7 0.76 2.6E-05 29.2 2.9 29 34-62 9-37 (93)
40 2w83_C C-JUN-amino-terminal ki 84.4 1.7 5.9E-05 28.0 4.5 38 19-56 26-73 (77)
41 3he4_B Synzip5; heterodimeric 84.1 2 6.9E-05 25.4 4.4 20 36-55 5-24 (46)
42 2wq1_A General control protein 84.0 1.6 5.4E-05 24.4 3.7 28 37-64 3-30 (33)
43 2zxx_A Geminin; coiled-coil, c 83.3 1.6 5.6E-05 27.9 4.0 36 31-66 31-66 (79)
44 2lw1_A ABC transporter ATP-bin 83.3 1.2 4.3E-05 27.3 3.4 30 28-57 16-45 (89)
45 1ci6_A Transcription factor AT 83.1 3.1 0.00011 24.5 5.0 23 40-62 22-44 (63)
46 3w03_C DNA repair protein XRCC 83.0 2.5 8.5E-05 30.3 5.3 33 32-64 143-175 (184)
47 3q4f_C DNA repair protein XRCC 82.7 2.5 8.7E-05 30.9 5.3 30 33-62 153-182 (186)
48 1kd8_B GABH BLL, GCN4 acid bas 82.6 3 0.0001 23.7 4.5 29 36-64 3-31 (36)
49 3c3g_A Alpha/beta peptide with 82.3 2 7E-05 24.0 3.7 28 38-65 4-31 (33)
50 2jn6_A Protein CGL2762, transp 82.0 0.081 2.8E-06 31.4 -2.3 25 39-63 64-88 (97)
51 1hjb_A Ccaat/enhancer binding 81.9 2.9 0.0001 26.6 4.9 35 30-64 25-59 (87)
52 1a93_B MAX protein, coiled coi 81.7 1.9 6.4E-05 24.1 3.4 20 34-53 14-33 (34)
53 1nkp_B MAX protein, MYC proto- 81.2 3 0.0001 25.0 4.5 25 38-62 51-75 (83)
54 1rtm_1 Mannose-binding protein 80.1 1.7 6E-05 26.9 3.3 23 32-54 2-24 (149)
55 3nmd_A CGMP dependent protein 80.0 6.9 0.00024 24.6 6.0 37 27-63 23-62 (72)
56 1z0j_B FYVE-finger-containing 80.0 7.2 0.00025 23.8 5.9 37 18-54 15-55 (59)
57 4dzn_A Coiled-coil peptide CC- 79.9 4.8 0.00016 22.4 4.7 28 35-62 3-30 (33)
58 3ol1_A Vimentin; structural ge 79.7 3.5 0.00012 26.8 4.7 43 34-77 76-118 (119)
59 3c3f_A Alpha/beta peptide with 79.5 2.9 9.8E-05 23.5 3.7 29 37-65 4-32 (34)
60 1rtm_1 Mannose-binding protein 79.5 2.1 7.2E-05 26.5 3.5 29 39-67 2-30 (149)
61 4etp_A Kinesin-like protein KA 79.1 2.9 9.8E-05 31.9 4.8 35 31-65 7-41 (403)
62 3vmx_A Voltage-gated hydrogen 79.1 3.8 0.00013 24.3 4.3 27 36-62 13-39 (48)
63 2l5g_A GPS2 protein, G protein 79.0 3.9 0.00013 23.4 4.2 24 36-59 10-33 (38)
64 1zme_C Proline utilization tra 77.4 4.2 0.00014 22.6 4.1 20 36-55 46-65 (70)
65 2oqq_A Transcription factor HY 76.3 5.1 0.00017 23.3 4.2 26 36-61 5-30 (42)
66 3tq2_A KE1; parallel three hel 76.3 7 0.00024 22.0 4.7 31 31-61 5-35 (36)
67 2er8_A Regulatory protein Leu3 76.1 2.1 7E-05 24.2 2.5 22 34-55 49-70 (72)
68 2bni_A General control protein 75.8 5.4 0.00018 22.3 4.1 28 38-65 5-32 (34)
69 1kd8_A GABH AIV, GCN4 acid bas 75.1 3.3 0.00011 23.5 3.1 29 36-64 3-31 (36)
70 2hy6_A General control protein 75.0 5.5 0.00019 22.3 4.0 28 37-64 4-31 (34)
71 2oa5_A Hypothetical protein BQ 74.7 2.8 9.6E-05 28.4 3.3 22 43-64 10-31 (110)
72 2wuj_A Septum site-determining 74.6 3.1 0.00011 24.1 3.1 24 32-55 32-55 (57)
73 1lwu_B Fibrinogen beta chain; 74.4 6.9 0.00024 29.5 5.7 48 16-63 10-57 (323)
74 1t6f_A Geminin; coiled-coil, c 73.7 10 0.00035 21.6 5.6 35 30-64 3-37 (37)
75 3kin_B Kinesin heavy chain; mo 72.7 7.6 0.00026 25.1 4.9 30 32-61 87-116 (117)
76 1aa0_A Fibritin, gpwac E; bact 72.5 8.4 0.00029 26.3 5.2 35 21-55 49-85 (113)
77 2l5g_B Putative uncharacterize 71.4 8 0.00027 22.4 4.2 25 32-56 14-38 (42)
78 1hlo_A Protein (transcription 70.5 4 0.00014 24.4 3.0 20 38-57 61-80 (80)
79 4dzo_A Mitotic spindle assembl 70.1 5.3 0.00018 26.5 3.8 22 34-55 4-25 (123)
80 1gd2_E Transcription factor PA 69.9 6.2 0.00021 24.2 3.8 21 40-60 28-48 (70)
81 3coq_A Regulatory protein GAL4 69.6 2 6.9E-05 24.9 1.4 20 34-53 45-64 (89)
82 3i5c_A Fusion of general contr 68.8 7.5 0.00026 24.1 4.1 37 37-73 3-39 (206)
83 4e61_A Protein BIM1; EB1-like 68.3 9.6 0.00033 25.4 4.7 27 33-59 17-43 (106)
84 1go4_E MAD1 (mitotic arrest de 68.0 9.4 0.00032 25.1 4.6 39 28-66 13-53 (100)
85 1hwt_C Protein (heme activator 67.9 2.1 7.3E-05 24.5 1.3 20 34-53 58-77 (81)
86 3mq7_A Bone marrow stromal ant 67.0 11 0.00037 26.0 4.9 34 32-65 76-109 (121)
87 2ve7_A Kinetochore protein HEC 66.3 3.2 0.00011 30.7 2.2 38 34-72 185-222 (315)
88 3viq_B Mating-type switching p 66.3 7.9 0.00027 24.9 3.9 27 36-62 3-29 (85)
89 1zme_C Proline utilization tra 65.9 11 0.00038 20.8 4.1 23 41-63 44-66 (70)
90 1nlw_A MAD protein, MAX dimeri 65.9 12 0.0004 22.9 4.5 25 38-62 51-75 (80)
91 1nkp_B MAX protein, MYC proto- 65.0 19 0.00066 21.4 5.3 38 17-59 42-79 (83)
92 3oja_B Anopheles plasmodium-re 63.5 13 0.00046 27.6 5.2 32 31-62 541-572 (597)
93 3aei_A Prefoldin beta subunit 62.8 8.3 0.00028 25.7 3.6 25 30-54 71-95 (99)
94 1nkp_A C-MYC, MYC proto-oncoge 62.8 14 0.00049 22.8 4.5 27 36-62 54-80 (88)
95 3u1c_A Tropomyosin alpha-1 cha 62.2 26 0.0009 22.0 6.2 27 34-60 23-49 (101)
96 2eqb_B RAB guanine nucleotide 61.7 6.1 0.00021 26.0 2.7 34 33-66 4-37 (97)
97 1a93_B MAX protein, coiled coi 61.5 17 0.00057 20.2 4.1 24 33-56 6-29 (34)
98 2w6a_A ARF GTPase-activating p 61.1 11 0.00038 23.5 3.7 35 16-62 28-62 (63)
99 1a92_A Delta antigen; leucine 60.9 9.7 0.00033 22.9 3.3 30 32-61 12-41 (50)
100 1t3j_A Mitofusin 1; coiled coi 59.7 24 0.00081 23.1 5.3 42 17-58 30-71 (96)
101 1jcd_A Major outer membrane li 59.5 20 0.00068 21.0 4.5 28 35-62 5-32 (52)
102 2wg5_A General control protein 59.5 12 0.0004 23.9 3.7 25 38-62 11-35 (109)
103 1am9_A Srebp-1A, protein (ster 59.2 12 0.00041 22.6 3.6 20 43-62 52-71 (82)
104 3u59_A Tropomyosin beta chain; 59.1 29 0.001 21.5 6.2 27 34-60 23-49 (101)
105 3err_A Fusion protein of micro 58.8 20 0.00069 28.5 5.7 34 31-64 177-210 (536)
106 2wg5_A General control protein 58.5 12 0.00041 23.8 3.7 30 26-55 6-35 (109)
107 3e98_A GAF domain of unknown f 58.1 11 0.00037 27.0 3.7 17 32-48 77-93 (252)
108 1lwu_B Fibrinogen beta chain; 57.9 15 0.00053 27.6 4.7 39 17-55 18-56 (323)
109 1bb1_B Designed, thermostable 57.3 23 0.0008 19.8 4.9 22 31-52 13-34 (36)
110 4dzn_A Coiled-coil peptide CC- 57.1 23 0.00077 19.6 4.3 25 31-55 6-30 (33)
111 1fxk_C Protein (prefoldin); ar 57.0 33 0.0011 21.5 6.6 39 17-56 86-124 (133)
112 3nmd_A CGMP dependent protein 56.9 15 0.00052 23.0 3.9 42 25-66 31-72 (72)
113 2dq0_A Seryl-tRNA synthetase; 56.2 23 0.0008 27.3 5.6 30 31-60 73-102 (455)
114 1ses_A Seryl-tRNA synthetase; 56.1 24 0.00082 26.9 5.6 29 31-59 68-96 (421)
115 3a2a_A Voltage-gated hydrogen 55.4 33 0.0011 21.0 5.5 31 33-63 17-47 (58)
116 4e61_A Protein BIM1; EB1-like 55.1 36 0.0012 22.6 5.7 16 32-47 23-38 (106)
117 2r2v_A GCN4 leucine zipper; co 55.0 23 0.00079 19.7 4.0 26 38-63 5-30 (34)
118 1wle_A Seryl-tRNA synthetase; 54.0 26 0.00088 27.7 5.6 29 31-59 120-148 (501)
119 2v6x_A Vacuolar protein sortin 53.8 28 0.00096 20.6 4.6 31 26-56 41-76 (85)
120 3trt_A Vimentin; cytoskeleton, 53.8 30 0.001 20.1 4.9 28 34-61 49-76 (77)
121 3qne_A Seryl-tRNA synthetase, 53.7 26 0.00089 27.9 5.6 28 31-58 75-102 (485)
122 2v66_B Nuclear distribution pr 51.8 28 0.00096 23.1 4.7 26 33-58 48-73 (111)
123 1zke_A Hypothetical protein HP 51.8 11 0.00039 24.5 2.7 17 31-47 56-72 (83)
124 3azd_A Short alpha-tropomyosin 51.6 9.1 0.00031 20.8 1.9 27 34-60 4-30 (37)
125 3v1a_A Computational design, M 51.5 34 0.0012 19.9 5.5 33 20-52 9-45 (48)
126 2fel_A 3-carboxy-CIS,CIS-mucon 51.2 41 0.0014 24.9 6.1 38 21-58 109-146 (359)
127 2zdi_C Prefoldin subunit alpha 51.1 47 0.0016 21.4 6.3 40 17-57 96-135 (151)
128 3viq_B Mating-type switching p 50.9 22 0.00074 22.9 3.9 25 32-56 6-30 (85)
129 3tq7_B Microtubule-associated 50.8 10 0.00035 24.1 2.3 25 35-59 2-26 (82)
130 1flk_A TNF receptor associated 50.8 38 0.0013 23.2 5.4 32 23-55 40-71 (228)
131 1j1d_B Troponin T, TNT; THIN f 50.6 18 0.00061 23.7 3.6 21 37-57 45-65 (106)
132 1buu_A Protein (mannose-bindin 50.5 24 0.00081 22.3 4.1 22 33-54 22-43 (168)
133 2akf_A Coronin-1A; coiled coil 50.1 25 0.00086 19.3 3.6 23 33-55 5-27 (32)
134 2v71_A Nuclear distribution pr 49.7 33 0.0011 24.5 5.2 29 32-60 100-128 (189)
135 1wfd_A Hypothetical protein 15 49.2 23 0.0008 21.7 3.8 31 26-56 43-78 (93)
136 3he5_B Synzip2; heterodimeric 48.9 25 0.00085 21.0 3.7 18 39-56 29-46 (52)
137 1use_A VAsp, vasodilator-stimu 48.5 35 0.0012 19.9 4.2 28 19-46 7-34 (45)
138 1uuj_A Platelet-activating fac 48.4 8.9 0.00031 24.7 1.8 18 39-56 63-80 (88)
139 1oeg_A Apolipoprotein E; siali 47.9 8.5 0.00029 20.2 1.4 17 36-52 3-19 (26)
140 1q08_A Zn(II)-responsive regul 47.2 40 0.0014 19.6 4.5 25 37-61 42-66 (99)
141 2cpt_A SKD1 protein, vacuolar 47.1 25 0.00087 22.7 3.9 30 26-55 46-81 (117)
142 1buu_A Protein (mannose-bindin 47.0 15 0.0005 23.3 2.7 30 37-66 19-48 (168)
143 1fmh_A General control protein 46.8 35 0.0012 18.8 4.0 27 35-61 2-28 (33)
144 3swk_A Vimentin; cytoskeleton, 46.7 27 0.00094 21.5 3.8 32 32-63 54-85 (86)
145 2dfs_A Myosin-5A; myosin-V, in 46.6 30 0.001 29.7 5.2 19 45-63 1020-1038(1080)
146 3iyn_Q Protein IX, PIX, hexon- 46.6 23 0.00079 24.9 3.8 46 22-67 93-138 (140)
147 2v6y_A AAA family ATPase, P60 46.2 31 0.0011 20.7 4.0 29 27-55 40-73 (83)
148 2zqm_A Prefoldin beta subunit 45.6 48 0.0016 19.9 6.6 38 17-55 68-105 (117)
149 2wuj_A Septum site-determining 45.4 35 0.0012 19.5 4.0 32 17-49 25-56 (57)
150 1pyi_A Protein (pyrimidine pat 45.3 24 0.00081 20.6 3.3 18 35-52 49-66 (96)
151 3kin_B Kinesin heavy chain; mo 44.8 25 0.00086 22.6 3.6 20 33-52 95-114 (117)
152 2dq3_A Seryl-tRNA synthetase; 44.7 21 0.00072 27.2 3.6 30 32-61 73-102 (425)
153 3i00_A HIP-I, huntingtin-inter 44.6 65 0.0022 21.2 6.3 34 19-52 22-58 (120)
154 2xdj_A Uncharacterized protein 44.4 48 0.0016 20.6 4.7 26 31-56 31-56 (83)
155 2w6b_A RHO guanine nucleotide 43.7 30 0.001 21.1 3.6 18 29-46 12-29 (56)
156 2v71_A Nuclear distribution pr 43.6 38 0.0013 24.2 4.7 29 34-62 49-77 (189)
157 4ani_A Protein GRPE; chaperone 43.2 40 0.0014 24.2 4.8 36 32-67 64-99 (213)
158 1oef_A Apolipoprotein E; glyco 43.0 29 0.00099 17.1 2.9 17 36-52 7-23 (26)
159 2zxx_A Geminin; coiled-coil, c 42.9 37 0.0013 21.5 4.1 31 33-63 40-70 (79)
160 3swk_A Vimentin; cytoskeleton, 42.8 19 0.00066 22.2 2.7 32 33-64 27-58 (86)
161 1dof_A Adenylosuccinate lyase; 42.5 61 0.0021 24.3 5.8 36 22-57 98-133 (403)
162 2pms_C Pneumococcal surface pr 41.9 33 0.0011 23.4 3.9 25 35-59 62-86 (125)
163 1c3c_A Protein (adenylosuccina 41.5 64 0.0022 24.2 5.8 36 22-57 95-130 (429)
164 2zvf_A Alanyl-tRNA synthetase; 41.5 37 0.0013 21.7 4.0 26 32-57 30-55 (171)
165 2zvf_A Alanyl-tRNA synthetase; 41.3 65 0.0022 20.5 5.2 27 37-63 28-54 (171)
166 3c8t_A Fumarate lyase; structu 41.2 64 0.0022 24.5 5.8 36 22-57 106-141 (451)
167 3fx0_A NF-kappa-B essential mo 41.1 51 0.0018 21.7 4.7 31 33-63 37-70 (96)
168 1aq5_A Matrilin-1, CMP, cartil 41.1 53 0.0018 19.1 4.4 23 32-54 21-43 (47)
169 3mtu_A Tropomyosin alpha-1 cha 41.0 58 0.002 19.6 6.4 36 20-56 3-45 (75)
170 1q5n_A 3-carboxy-CIS,CIS-mucon 41.0 65 0.0022 24.4 5.8 36 22-57 112-147 (454)
171 1re5_A 3-carboxy-CIS,CIS-mucon 40.8 66 0.0022 24.3 5.8 36 22-57 108-143 (450)
172 1ytz_T Troponin T; muscle, THI 40.7 21 0.00071 23.4 2.7 21 37-57 45-65 (107)
173 2e9f_A Argininosuccinate lyase 40.7 65 0.0022 24.7 5.8 37 22-58 112-148 (462)
174 1jsw_A L-aspartase, L-aspartat 40.5 69 0.0024 24.7 6.0 38 21-58 145-182 (478)
175 1k7w_A Delta 2 crystallin; eye 40.5 66 0.0022 24.7 5.8 36 22-57 117-152 (468)
176 1fxk_C Protein (prefoldin); ar 40.1 63 0.0022 20.1 4.9 31 33-63 87-117 (133)
177 1wlq_A Geminin; coiled-coil; 2 39.9 37 0.0013 21.8 3.8 22 33-54 44-65 (83)
178 3jsv_C NF-kappa-B essential mo 39.9 77 0.0026 20.7 5.3 31 32-62 21-54 (94)
179 2wt7_B Transcription factor MA 39.9 62 0.0021 20.7 4.8 26 35-60 49-74 (90)
180 2pfm_A Adenylosuccinate lyase; 39.5 70 0.0024 24.3 5.8 37 21-57 106-142 (444)
181 4ani_A Protein GRPE; chaperone 39.5 26 0.00089 25.2 3.3 31 34-66 59-89 (213)
182 4eei_A Adenylosuccinate lyase; 39.4 77 0.0026 24.2 6.1 37 21-57 95-131 (438)
183 1tj7_A Argininosuccinate lyase 38.9 63 0.0022 24.7 5.5 36 22-57 111-146 (457)
184 3he5_A Synzip1; heterodimeric 38.9 34 0.0012 20.2 3.2 18 44-61 6-23 (49)
185 3r6q_A Aspartase; aspartate am 38.1 74 0.0025 24.7 5.8 37 21-57 142-178 (468)
186 2w6a_A ARF GTPase-activating p 37.4 73 0.0025 19.7 5.6 23 40-62 26-48 (63)
187 1vdk_A Fumarase C, fumarate hy 37.4 63 0.0022 24.8 5.3 36 22-57 142-178 (466)
188 2pnv_A Small conductance calci 37.1 41 0.0014 19.0 3.2 19 37-55 19-37 (43)
189 3i00_A HIP-I, huntingtin-inter 36.9 74 0.0025 21.0 5.0 19 43-61 42-60 (120)
190 3m9b_A Proteasome-associated A 36.8 44 0.0015 25.0 4.3 24 39-62 73-96 (251)
191 4etp_A Kinesin-like protein KA 36.7 34 0.0012 25.9 3.7 24 31-54 14-37 (403)
192 1d66_A Protein (GAL4); protein 36.4 13 0.00044 20.1 1.0 15 40-54 51-65 (66)
193 1fur_A Fumarase C, FUMC; hydro 35.9 85 0.0029 24.2 5.8 37 21-57 141-178 (467)
194 3bhg_A Adenylosuccinate lyase; 35.9 69 0.0024 24.4 5.3 37 21-57 127-164 (459)
195 1l8d_A DNA double-strand break 35.7 72 0.0025 19.2 6.3 28 33-60 70-97 (112)
196 2ic6_A Nucleocapsid protein; h 35.5 57 0.002 20.7 4.1 25 31-55 49-73 (78)
197 2k48_A Nucleoprotein; viral pr 35.2 53 0.0018 22.1 4.1 25 31-55 79-103 (107)
198 1fzc_C Fibrin; blood coagulati 35.1 79 0.0027 23.8 5.5 24 33-56 17-40 (319)
199 1x79_B RAB GTPase binding effe 35.1 20 0.00069 23.9 2.0 36 27-62 70-105 (112)
200 2qga_B Adenylosuccinate lyase; 34.9 73 0.0025 24.3 5.3 36 22-57 124-160 (465)
201 3pbf_A Pulmonary surfactant-as 34.3 46 0.0016 20.0 3.4 20 37-56 5-24 (148)
202 3eff_K Voltage-gated potassium 34.2 84 0.0029 19.5 5.4 20 37-56 114-133 (139)
203 2xdj_A Uncharacterized protein 34.2 77 0.0026 19.7 4.5 36 27-62 20-55 (83)
204 3rrk_A V-type ATPase 116 kDa s 34.2 78 0.0027 22.4 5.1 25 32-56 104-128 (357)
205 2ve7_A Kinetochore protein HEC 34.0 65 0.0022 23.6 4.7 19 42-60 186-204 (315)
206 2ptr_A Adenylosuccinate lyase; 33.7 79 0.0027 24.1 5.3 36 22-57 125-161 (462)
207 2nr5_A Hypothetical protein SO 33.5 29 0.001 21.6 2.4 16 34-49 44-59 (67)
208 1fzc_B Fibrin; blood coagulati 32.8 35 0.0012 25.7 3.2 23 32-54 35-57 (328)
209 3ocf_A Fumarate lyase:delta cr 32.8 80 0.0027 24.7 5.3 37 21-57 162-198 (478)
210 3ra3_B P2F; coiled coil domain 32.6 60 0.002 17.3 3.3 20 39-58 5-24 (28)
211 3lss_A Seryl-tRNA synthetase; 32.6 77 0.0026 25.1 5.2 27 33-59 109-136 (484)
212 3rrk_A V-type ATPase 116 kDa s 32.5 92 0.0031 22.0 5.2 31 33-63 98-128 (357)
213 1q06_A Transcriptional regulat 31.9 84 0.0029 19.8 4.5 25 37-61 82-106 (135)
214 2ve7_C Kinetochore protein NUF 31.6 70 0.0024 22.9 4.5 34 35-68 149-182 (250)
215 3itf_A Periplasmic adaptor pro 31.4 69 0.0023 21.5 4.2 43 31-73 71-128 (145)
216 1uii_A Geminin; human, DNA rep 31.4 1E+02 0.0036 19.7 5.0 20 43-62 48-67 (83)
217 1lwu_C Fibrinogen gamma chain; 31.4 1.3E+02 0.0044 22.7 6.1 29 32-60 24-52 (323)
218 1yfm_A Fumarase, YFUM; lyase, 31.2 89 0.003 24.4 5.3 37 21-57 166-203 (488)
219 3na7_A HP0958; flagellar bioge 31.0 1.1E+02 0.0038 21.2 5.3 35 20-54 82-117 (256)
220 3gaa_A Uncharacterized protein 30.9 67 0.0023 22.5 4.2 26 31-56 218-243 (252)
221 1j1d_C Troponin I, TNI; THIN f 30.9 53 0.0018 22.3 3.6 21 37-57 61-81 (133)
222 2w2u_A Hypothetical P60 katani 30.7 91 0.0031 18.8 4.4 29 27-55 48-81 (83)
223 3u06_A Protein claret segregat 30.3 54 0.0018 25.1 3.9 19 32-50 15-33 (412)
224 2xzr_A Immunoglobulin-binding 30.3 1.1E+02 0.0037 20.8 5.0 31 33-63 75-105 (114)
225 4etp_B Spindle POLE BODY-assoc 30.2 66 0.0023 25.1 4.4 27 30-56 6-32 (333)
226 3q0x_A Centriole protein; cent 30.0 1.6E+02 0.0053 21.5 6.2 39 22-64 163-201 (228)
227 2p0s_A ABC transporter, permea 29.5 70 0.0024 19.8 3.8 33 44-76 84-118 (143)
228 1txp_A HnRNP C, heterogeneous 29.4 35 0.0012 18.3 2.0 24 31-54 3-26 (28)
229 2vz4_A Tipal, HTH-type transcr 29.1 96 0.0033 18.6 4.3 27 36-62 76-102 (108)
230 1ik9_A DNA repair protein XRCC 28.9 1.3E+02 0.0044 21.2 5.5 18 33-50 145-162 (213)
231 3zwh_Q Myosin-9; Ca-binding pr 28.9 32 0.0011 19.7 1.9 23 42-64 7-29 (45)
232 4g1a_A AQ-C16C19 peptide; heli 28.8 28 0.00094 19.1 1.5 16 42-57 1-16 (32)
233 3ra3_A P1C; coiled coil domain 28.6 72 0.0025 17.0 3.5 19 35-53 8-26 (28)
234 3ol1_A Vimentin; structural ge 28.5 97 0.0033 19.8 4.4 39 32-70 46-84 (119)
235 1fxk_A Prefoldin; archaeal pro 28.3 95 0.0033 18.3 5.4 23 35-57 73-95 (107)
236 3s9g_A Protein hexim1; cyclin 28.2 1E+02 0.0034 20.7 4.5 30 34-63 65-94 (104)
237 2v66_B Nuclear distribution pr 28.0 1.3E+02 0.0045 19.8 5.9 32 30-61 38-69 (111)
238 1fmh_B General control protein 27.9 80 0.0028 17.3 3.8 29 35-63 2-30 (33)
239 2yko_A LINE-1 ORF1P; RNA-bindi 27.8 77 0.0026 23.4 4.2 21 35-55 7-27 (233)
240 3q8t_A Beclin-1; autophagy, AT 27.8 1.1E+02 0.0039 19.0 5.3 25 34-58 11-35 (96)
241 2ic9_A Nucleocapsid protein; h 27.8 87 0.003 20.6 4.1 28 31-58 49-76 (96)
242 1lwu_C Fibrinogen gamma chain; 27.7 2E+02 0.0067 21.7 7.0 30 28-57 27-56 (323)
243 2rn7_A IS629 ORFA; helix, all 27.6 0.079 2.7E-06 31.9 -10.0 23 42-64 72-94 (108)
244 3mud_A DNA repair protein XRCC 27.5 1.7E+02 0.0057 20.8 6.7 42 21-63 123-164 (175)
245 2rjz_A PILO protein; structura 27.2 57 0.0019 21.4 3.1 29 36-70 17-45 (147)
246 1r8d_A Transcription activator 26.8 1.1E+02 0.0037 18.4 4.5 26 36-61 77-102 (109)
247 2wt7_B Transcription factor MA 26.8 1.3E+02 0.0043 19.2 4.8 30 34-63 55-84 (90)
248 3pjs_K KCSA, voltage-gated pot 26.8 91 0.0031 20.2 4.1 18 38-55 142-159 (166)
249 2ve7_C Kinetochore protein NUF 26.7 76 0.0026 22.7 4.0 32 33-64 140-171 (250)
250 2v4h_A NF-kappa-B essential mo 26.6 1.5E+02 0.005 19.9 5.3 31 32-62 43-76 (110)
251 1fzc_C Fibrin; blood coagulati 26.6 94 0.0032 23.4 4.6 27 31-57 22-48 (319)
252 2a26_A Calcyclin-binding prote 26.6 76 0.0026 18.2 3.2 32 23-54 15-47 (50)
253 4fi5_A Nucleoprotein; structur 26.3 73 0.0025 21.6 3.6 25 31-55 66-90 (113)
254 2wvr_A Geminin; DNA replicatio 26.0 77 0.0026 23.4 3.9 32 32-63 127-158 (209)
255 2xv5_A Lamin-A/C; structural p 25.9 1.2E+02 0.004 18.5 4.2 35 33-67 25-59 (74)
256 4gkw_A Spindle assembly abnorm 25.7 1.5E+02 0.0052 21.1 5.3 34 30-63 122-155 (167)
257 3a5t_A Transcription factor MA 25.5 4 0.00014 27.1 -2.8 28 35-62 59-86 (107)
258 3cve_A Homer protein homolog 1 25.5 85 0.0029 19.4 3.5 17 37-53 17-33 (72)
259 3twe_A Alpha4H; unknown functi 25.2 84 0.0029 16.6 3.1 17 34-50 8-24 (27)
260 1lj2_A NSP3-C, nonstructural R 25.1 58 0.002 22.1 2.9 17 40-56 12-28 (110)
261 3v86_A De novo design helix; c 25.1 84 0.0029 16.6 4.1 22 30-51 3-24 (27)
262 2zdi_C Prefoldin subunit alpha 24.7 1.4E+02 0.0049 19.1 4.9 30 34-63 98-127 (151)
263 1j1v_A Chromosomal replication 24.6 84 0.0029 19.2 3.4 19 3-21 57-75 (94)
264 3qks_A DNA double-strand break 24.3 1.2E+02 0.0042 19.6 4.4 24 34-57 168-191 (203)
265 1gmj_A ATPase inhibitor; coile 23.9 1.5E+02 0.005 19.0 7.5 31 21-55 42-72 (84)
266 1fzc_B Fibrin; blood coagulati 23.7 1.2E+02 0.0042 22.7 4.8 29 36-64 32-60 (328)
267 3o0z_A RHO-associated protein 23.6 1.5E+02 0.0052 20.8 5.0 13 31-43 101-113 (168)
268 1htn_A Tetranectin; plasminoge 23.5 47 0.0016 21.0 2.1 22 34-55 22-43 (182)
269 3gpv_A Transcriptional regulat 23.3 1.5E+02 0.0052 18.9 5.2 24 37-60 98-121 (148)
270 4adm_A Fumarase C, fumarate hy 23.3 1.5E+02 0.0051 23.3 5.3 37 21-57 162-199 (495)
271 1bb1_A Designed, thermostable 23.3 1.1E+02 0.0036 17.1 3.4 20 31-50 13-32 (36)
272 2gr7_A Adhesin; trimeric autot 23.2 94 0.0032 20.5 3.6 36 22-57 20-55 (129)
273 3bs5_B Connector enhancer of k 23.2 32 0.0011 19.7 1.2 19 39-57 62-80 (80)
274 3tnu_B Keratin, type II cytosk 23.1 1.5E+02 0.0051 18.8 4.7 25 33-57 35-59 (129)
275 1yis_A Adenylosuccinate lyase; 23.0 2E+02 0.0067 22.0 5.8 32 26-57 114-145 (478)
276 2js5_A Uncharacterized protein 22.9 58 0.002 20.3 2.4 24 34-57 3-26 (71)
277 1gxl_A SMC, chromosome segrega 22.8 33 0.0011 22.0 1.3 19 31-49 194-212 (213)
278 2zhg_A Redox-sensitive transcr 22.7 1.5E+02 0.0052 19.2 4.6 28 37-64 93-120 (154)
279 1pwb_A SP-D, PSP-D, pulmonary 22.3 1E+02 0.0035 19.3 3.5 20 36-55 33-52 (177)
280 3mud_A DNA repair protein XRCC 22.2 2E+02 0.0067 20.4 5.3 30 32-61 126-155 (175)
281 3rvy_A ION transport protein; 22.2 19 0.00064 24.6 0.0 20 35-54 257-276 (285)
282 1f1m_A OSPC, outer surface pro 21.8 1.6E+02 0.0055 21.1 4.8 34 9-48 2-37 (164)
283 2dii_A TFIIH basal transcripti 21.7 70 0.0024 19.4 2.6 21 44-65 14-34 (61)
284 2p22_A Suppressor protein STP2 21.7 1.9E+02 0.0065 20.2 5.2 29 34-62 56-84 (174)
285 3u59_A Tropomyosin beta chain; 21.2 1.5E+02 0.0052 18.1 4.7 24 31-54 13-36 (101)
286 4hgv_A Fumarase C, fumarate hy 21.1 1.9E+02 0.0066 22.6 5.5 36 22-57 174-210 (495)
287 3b5n_D Protein transport prote 21.1 1.3E+02 0.0046 17.5 4.9 28 26-53 23-50 (64)
288 1joc_A EEA1, early endosomal a 21.1 1.7E+02 0.0058 18.6 5.2 27 35-61 19-52 (125)
289 1got_B GT-beta; complex (GTP-b 21.0 89 0.0031 20.5 3.1 16 31-46 6-21 (340)
290 3efg_A Protein SLYX homolog; x 20.9 1.5E+02 0.0051 18.0 4.5 46 18-64 13-58 (78)
291 1ca9_A TRAF2, protein (TNF rec 20.9 1.3E+02 0.0043 19.5 3.9 29 26-54 6-37 (192)
292 2j91_A Adenylosuccinate lyase; 20.7 2.3E+02 0.0078 22.0 5.8 32 26-57 140-171 (503)
293 3kqg_A Langerin, C-type lectin 20.6 1.6E+02 0.0053 18.3 4.1 17 36-52 18-34 (182)
294 3fga_D Shugoshin-like 1; PP2A, 20.4 1.4E+02 0.0049 17.5 4.4 32 28-61 13-44 (47)
295 2gkw_A TNF receptor-associated 20.3 1.2E+02 0.0042 19.9 3.7 21 35-55 15-35 (192)
296 1j1e_C Troponin I, TNI; THIN f 20.3 1E+02 0.0035 21.9 3.6 20 37-56 61-80 (180)
297 3o39_A Periplasmic protein rel 20.1 1.8E+02 0.0061 18.5 4.6 24 49-73 77-100 (108)
No 1
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=99.98 E-value=8e-35 Score=191.03 Aligned_cols=58 Identities=55% Similarity=0.730 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHhcCCCCCC
Q psy8522 20 IKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQETLGQLPHPNS 77 (78)
Q Consensus 20 AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q~~~~~~ 77 (78)
||||||||||||||||||+||++|+||++||++||+||++||+++|||||+||++|-+
T Consensus 1 AMDLVKtHLm~AVREEVevLKe~I~EL~e~~~qLE~EN~~Lk~~aspEql~q~q~~l~ 58 (78)
T 1dip_A 1 XMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSRLS 58 (78)
T ss_dssp -CCSTTTGGGGTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCCCSSSSC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhccC
Confidence 8999999999999999999999999999999999999999999999999999998753
No 2
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=97.31 E-value=0.00019 Score=42.71 Aligned_cols=44 Identities=34% Similarity=0.444 Sum_probs=28.4
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 19 HIKDLVKSHLM--FAVREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 19 QAMDLVKsHLm--~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
.|+|.+|.||. =.-..+||.||....+|..|+..|..++.-|++
T Consensus 2 ~AlefIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 2 SALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999998 446789999999999999999999999988876
No 3
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.23 E-value=0.00062 Score=40.18 Aligned_cols=30 Identities=37% Similarity=0.500 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
..+..|..+.+||++|+|-|+.||..||+.
T Consensus 10 ~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 10 NRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456778999999999999999999999975
No 4
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.05 E-value=0.031 Score=36.15 Aligned_cols=42 Identities=33% Similarity=0.375 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Q psy8522 16 FAYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQ-------LEMENSILKA 62 (78)
Q Consensus 16 ~ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~-------LE~EN~~Lk~ 62 (78)
+|.+|+|-+.. .+.||+.||++-..|...+.+ |..||.-||.
T Consensus 14 KIq~avdtI~l-----LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~ 62 (81)
T 2jee_A 14 KVQQAIDTITL-----LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 62 (81)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 78899987654 467888888888888887777 7778887775
No 5
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=95.96 E-value=0.015 Score=34.86 Aligned_cols=34 Identities=32% Similarity=0.309 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
..-.+|+.|+....+|..+++.|+.|+..||++.
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999864
No 6
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=93.13 E-value=0.12 Score=30.27 Aligned_cols=29 Identities=28% Similarity=0.224 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
++.|-.++..|+..|..|..+++.|+..+
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444445555555555555555554443
No 7
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=92.69 E-value=0.58 Score=27.15 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
-.-.+|+.|.....+|..++..|+.|+.-||+.
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888888888888888865
No 8
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=92.34 E-value=0.18 Score=28.47 Aligned_cols=29 Identities=31% Similarity=0.313 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy8522 37 EVLKEKIAELMERINQLEMENSILKANAT 65 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~~Lk~~as 65 (78)
-.|.++..+|..+++.||.|..-||.+.+
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 45788999999999999999999998754
No 9
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=91.98 E-value=0.45 Score=26.64 Aligned_cols=30 Identities=30% Similarity=0.553 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
+++...|-.+.+.-.+|+..||++|..|..
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~~N~~Le~ 34 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQQNKILLA 34 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888999999999999999999875
No 10
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=91.82 E-value=0.31 Score=28.62 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~E 56 (78)
|.|.|.+.||.++.+|.+++..|...
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999888764
No 11
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=91.65 E-value=0.23 Score=29.74 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 40 KEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 40 Ke~I~eL~er~~~LE~EN~~Lk~ 62 (78)
++++.+|+.++.+|+.||.-|+.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555543
No 12
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=91.46 E-value=0.38 Score=31.90 Aligned_cols=31 Identities=39% Similarity=0.528 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
-+|+++.||.+|.+|+..+..|..++..|..
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999888765
No 13
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=91.34 E-value=0.53 Score=27.48 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 40 KEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 40 Ke~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
|..+.+|+.++.+|+.||.-|+.-
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~ 44 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEE 44 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577999999999999999999864
No 14
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=91.31 E-value=0.43 Score=31.05 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 29 MFAVREEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 29 m~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
.+.+-+|=+.|.++|..|.+.++.|+.||.-||.++..-
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678889999999999999999999999999987543
No 15
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=91.16 E-value=0.45 Score=27.79 Aligned_cols=31 Identities=32% Similarity=0.373 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
-.+|+.|..+-.+|..+++.|+.|+.-||+.
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555666666665555543
No 16
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=90.70 E-value=0.49 Score=31.77 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 22 DLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSI 59 (78)
Q Consensus 22 DLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~ 59 (78)
|==||-|+| +||.||..+.|+++.+.++.+|+.=
T Consensus 22 DNEKsal~Y----qVdlLKD~LEe~eE~~aql~Re~~e 55 (103)
T 4h22_A 22 DNEKTNFMY----QVDTLKDMLLELEEQLAESRRQYEE 55 (103)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556888888 7899999999999999999988753
No 17
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=90.38 E-value=0.14 Score=36.90 Aligned_cols=45 Identities=29% Similarity=0.247 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhCC
Q psy8522 19 HIKDLVKSHLMFAVREEVEVLKEKIAELMER---INQLEMENSILKANAT 65 (78)
Q Consensus 19 QAMDLVKsHLm~AVREEVEvLKe~I~eL~er---~~~LE~EN~~Lk~~as 65 (78)
...+-+.++ +.+++|-+.||+++.+|..+ +.+|+.||.-||.+..
T Consensus 13 ~~~~~~~~~--~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 13 GAVDGVVDL--KNTYTENQHLKERLEELAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp ---------------CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444443 34679999999999988865 4577889999998754
No 18
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=89.65 E-value=1.6 Score=29.64 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHH-----HHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Q psy8522 22 DLVKSHLMFAVREE-----VEVLK-------EKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 22 DLVKsHLm~AVREE-----VEvLK-------e~I~eL~er~~~LE~EN~~Lk~ 62 (78)
+||+.+|.+-.|-+ -.-|+ .+|.+|+.++.+|..||..|++
T Consensus 34 ELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 56666666554432 22233 3899999999999999998875
No 19
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=89.49 E-value=0.57 Score=30.52 Aligned_cols=37 Identities=27% Similarity=0.294 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q psy8522 30 FAVREEVEVLKEKIAELMERINQLEMENSILKANATQ 66 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 66 (78)
+-+-+|=+.|.++|..+.+.++.|+.||.-|+.+|..
T Consensus 34 ~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 34 YEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999999999876
No 20
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=89.44 E-value=0.72 Score=25.83 Aligned_cols=28 Identities=32% Similarity=0.310 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy8522 38 VLKEKIAELMERINQLEMENSILKANAT 65 (78)
Q Consensus 38 vLKe~I~eL~er~~~LE~EN~~Lk~~as 65 (78)
.|.++..+|..+++.||.|=.-||.+..
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 4778999999999999999999998764
No 21
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=89.44 E-value=0.5 Score=27.62 Aligned_cols=28 Identities=36% Similarity=0.438 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy8522 38 VLKEKIAELMERINQLEMENSILKANAT 65 (78)
Q Consensus 38 vLKe~I~eL~er~~~LE~EN~~Lk~~as 65 (78)
-=|+.|.+|+.++..|+.||.-|+.-++
T Consensus 19 rKk~~~~~Le~~v~~L~~~n~~L~~~v~ 46 (62)
T 1jnm_A 19 RKLERIARLEEKVKTLKAQNSELASTAN 46 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777765543
No 22
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=89.12 E-value=1 Score=28.97 Aligned_cols=33 Identities=27% Similarity=0.310 Sum_probs=28.5
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 23 LVKSHLMF--AVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 23 LVKsHLm~--AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
-||+|=+= ||+-||..+|..|.+++.++..||.
T Consensus 9 sVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~ 43 (74)
T 1avy_A 9 KIKAIETDIASVRQEVNTAKGNISSLQGDVQALQE 43 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccchhhhheeeccccchhhhhhhhhHHHHh
Confidence 36776644 8999999999999999999999986
No 23
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=88.97 E-value=1.6 Score=25.98 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVR----EEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 21 MDLVKsHLm~AVR----EEVEvLKe~I~eL~er~~~LE~E 56 (78)
+++|++-+-=|-+ +||+.|++.++||.+.+.+++.+
T Consensus 11 ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~~~~ 50 (51)
T 1yzm_A 11 IHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQTE 50 (51)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4577777766665 79999999999999999988754
No 24
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=88.73 E-value=1.2 Score=31.46 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 24 VKSHLMFAVREEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 24 VKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
.|+.+.=.++.|...|.-+...+++++..|+.||.-|
T Consensus 93 eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 93 LKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777899999999999999999999999999543
No 25
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=88.22 E-value=0.68 Score=26.86 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 40 KEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 40 Ke~I~eL~er~~~LE~EN~~Lk~ 62 (78)
|+.|.+|+.++..|+.||.-|+.
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~ 43 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQS 43 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666665554
No 26
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=88.12 E-value=0.83 Score=33.98 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q psy8522 29 MFAVREEVEVLKEKIAELMERINQLEMENSILKANATQ 66 (78)
Q Consensus 29 m~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 66 (78)
.+.+-+|=+.|.++|..|.+.++.|+.||.-||.++..
T Consensus 110 L~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~ 147 (209)
T 2wvr_A 110 LYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 147 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667889999999999999999999999999998754
No 27
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=87.79 E-value=1.3 Score=26.39 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKANAT 65 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 65 (78)
+.++.|..++.+|...|+.|+.|...||..+.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56889999999999999999999999998764
No 28
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=87.68 E-value=1.3 Score=25.99 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
-.+|+.|+..-.+|..+++.|+.|..-|+..
T Consensus 29 e~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 29 QAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777777777654
No 29
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=87.37 E-value=0.8 Score=26.91 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 40 KEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 40 Ke~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
|+.|.+|+.++..|+.+|.-|+.-+
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5668888888888888888887654
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=86.98 E-value=0.88 Score=30.69 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~E 56 (78)
++.|+++|.+|..++..||.|
T Consensus 112 ~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 112 IKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 31
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=86.17 E-value=2 Score=26.91 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKANAT 65 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 65 (78)
..|+.|...=..|..++.+|+.|...||.+..
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666677777777777776543
No 32
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=86.10 E-value=1.9 Score=27.52 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
-.+|+.|...=..|..++.+|+.|...||.+
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777777754
No 33
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=85.90 E-value=1.8 Score=27.09 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVR----EEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 21 MDLVKsHLm~AVR----EEVEvLKe~I~eL~er~~~LE~E 56 (78)
+++||+-+-=|-+ +||+.|++.++||.+.+.+++.|
T Consensus 29 ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~q~~ 68 (69)
T 1z0k_B 29 IHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQTE 68 (69)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5577777776665 79999999999999999888743
No 34
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=85.62 E-value=1.9 Score=26.98 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 30 FAVREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
-||+.==+-=|.+..+++.++..|+.||..|+.-+
T Consensus 25 ~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v 59 (78)
T 1gu4_A 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKV 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666566667777788888888888888887644
No 35
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=85.61 E-value=1.4 Score=27.13 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
+..|..++.+|+..+..|..||..||..
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~ 58 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQK 58 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777777777888888753
No 36
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=85.59 E-value=1.7 Score=27.96 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
+.+..|+..|.||.++|..|..||.-++.
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34557888999999999999999988776
No 37
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=85.58 E-value=1.2 Score=34.24 Aligned_cols=36 Identities=28% Similarity=0.247 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANATQ 66 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 66 (78)
..++|++.|++++.+|++++.+++.|+.-+++..-.
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999888765433
No 38
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=85.06 E-value=1.8 Score=24.33 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy8522 38 VLKEKIAELMERINQLEMENSILKANAT 65 (78)
Q Consensus 38 vLKe~I~eL~er~~~LE~EN~~Lk~~as 65 (78)
.|.++..+|..+++.||.|=.-||.+..
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 5778899999999999999999998764
No 39
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=84.70 E-value=0.76 Score=29.15 Aligned_cols=29 Identities=34% Similarity=0.587 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
++.-.|-.+.+--.+|+..||++|..|..
T Consensus 9 e~mq~LNdRlAsyIdKVR~LEqqN~~Le~ 37 (93)
T 3s4r_A 9 VELQELNDRFANLIDKVRFLEQQNKILLA 37 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888999999999999999998864
No 40
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=84.44 E-value=1.7 Score=28.01 Aligned_cols=38 Identities=29% Similarity=0.403 Sum_probs=22.7
Q ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 19 HIKDLVKSHLM----------FAVREEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 19 QAMDLVKsHLm----------~AVREEVEvLKe~I~eL~er~~~LE~E 56 (78)
.|.+.||.-|. .++++|.+-+++-+..+..|+..||.|
T Consensus 26 NaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 26 NALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677776664 466777777777777777777777766
No 41
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=84.14 E-value=2 Score=25.36 Aligned_cols=20 Identities=45% Similarity=0.468 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~ 55 (78)
|..||+-|.||++||.+|..
T Consensus 5 vkelknyiqeleernaelkn 24 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKN 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHh
Confidence 56799999999999988764
No 42
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=83.99 E-value=1.6 Score=24.43 Aligned_cols=28 Identities=21% Similarity=0.115 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 37 EVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
-.|.+++.||..+++.||.|=.-||.+.
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3578899999999999999998888764
No 43
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=83.28 E-value=1.6 Score=27.92 Aligned_cols=36 Identities=28% Similarity=0.255 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANATQ 66 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 66 (78)
-+-+|=+.|..+|..+.+.+..|+.||..|+..+..
T Consensus 31 eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~ 66 (79)
T 2zxx_A 31 EALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888889999999999999999999877653
No 44
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=83.26 E-value=1.2 Score=27.30 Aligned_cols=30 Identities=20% Similarity=0.443 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 28 LMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 28 Lm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
|+|--+.|.+.|-.+|..|+.++..|+.+=
T Consensus 16 LSykeqrEle~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 16 LSYKLQRELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999999999999999998763
No 45
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=83.12 E-value=3.1 Score=24.52 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 40 KEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 40 Ke~I~eL~er~~~LE~EN~~Lk~ 62 (78)
|+.+.+|+.++..|+.+|.-|+.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~ 44 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKE 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 46
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=83.05 E-value=2.5 Score=30.34 Aligned_cols=33 Identities=27% Similarity=0.246 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
+||=++-+=++|++|.++|.+|+.||..|+.-.
T Consensus 143 i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~ 175 (184)
T 3w03_C 143 IRELICYCLDTIAENQAKNEHLQKENERLLRDW 175 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677889999999999999999888654
No 47
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=82.72 E-value=2.5 Score=30.88 Aligned_cols=30 Identities=30% Similarity=0.252 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
||=..-.=.+|++|+.+|.+|+.||.-|.+
T Consensus 153 rELi~~~L~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 153 RELICYCLDTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444556899999999999999988864
No 48
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=82.64 E-value=3 Score=23.69 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
+-.|+.+..||..+++.||.|=.-||.+.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 35688899999999999999988888764
No 49
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=82.27 E-value=2 Score=23.98 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy8522 38 VLKEKIAELMERINQLEMENSILKANAT 65 (78)
Q Consensus 38 vLKe~I~eL~er~~~LE~EN~~Lk~~as 65 (78)
.|.++..+|..+++.||.|=.-||.+..
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 5778999999999999999999998754
No 50
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=82.01 E-value=0.081 Score=31.37 Aligned_cols=25 Identities=12% Similarity=0.020 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 39 LKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 39 LKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
..++|++|+.+|.+|+.||.+||..
T Consensus 64 ~~~ei~~L~~e~~~L~~e~~~Lkk~ 88 (97)
T 2jn6_A 64 EAEQIRQLKKENALQRARTRHPAES 88 (97)
T ss_dssp THHHHHHHHHCGGGGGGTTSCCCGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888754
No 51
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=81.91 E-value=2.9 Score=26.65 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 30 FAVREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
.|||.==+-=|.+..++..++.+|+.||..|+.-+
T Consensus 25 ~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v 59 (87)
T 1hjb_A 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKV 59 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556666777777777777777777777643
No 52
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=81.69 E-value=1.9 Score=24.12 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQL 53 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~L 53 (78)
.++|.||.|.+-|++++..|
T Consensus 14 qDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 14 QDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHhc
Confidence 34444444444444444433
No 53
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=81.22 E-value=3 Score=25.04 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 38 VLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 38 vLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
.|+.++.+|...+.+|..||..|++
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~ 75 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQ 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555666666666666554
No 54
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=80.11 E-value=1.7 Score=26.87 Aligned_cols=23 Identities=9% Similarity=0.268 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE 54 (78)
+++++..|..+|..|+.++.+|.
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~ 24 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTN 24 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555554444
No 55
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=79.98 E-value=6.9 Score=24.62 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=26.5
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 27 HLMFAVRE---EVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 27 HLm~AVRE---EVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
.|-+|+++ |.-...++|++|+.++.+.+.|..-|+.-
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNE 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556644 44455567999999999999988888753
No 56
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=79.98 E-value=7.2 Score=23.83 Aligned_cols=37 Identities=30% Similarity=0.394 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy8522 18 YHIKDLVKSHLMFAVR----EEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 18 eQAMDLVKsHLm~AVR----EEVEvLKe~I~eL~er~~~LE 54 (78)
.|=+++||+-+-=|-+ +||++|.+.++||.+.+.+++
T Consensus 15 ~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~~~~ 55 (59)
T 1z0j_B 15 LQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQK 55 (59)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 3446688888877775 799999999999999988765
No 57
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=79.91 E-value=4.8 Score=22.36 Aligned_cols=28 Identities=39% Similarity=0.547 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
|+..||..|+-|...+..|.-|-..||+
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556677777777777777777777765
No 58
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=79.69 E-value=3.5 Score=26.76 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHhcCCCCCC
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKANATQETLGQLPHPNS 77 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q~~~~~~ 77 (78)
..||..-=.-.+|+.++..|..|=.+||.+.. +.+..+++|-+
T Consensus 76 K~lD~~~l~r~dLE~~iesL~eEl~FLKk~he-eEl~eLq~qi~ 118 (119)
T 3ol1_A 76 QDVDNASLARLDLERKVESLQEEIAFLKKLHE-EEIQELQAQIQ 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSCC-
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 33333333456789999999999999999874 55666766654
No 59
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=79.52 E-value=2.9 Score=23.52 Aligned_cols=29 Identities=10% Similarity=0.174 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy8522 37 EVLKEKIAELMERINQLEMENSILKANAT 65 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~~Lk~~as 65 (78)
-.|.++..+|..+++.||.|=.-||.+..
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 35778899999999999999999988754
No 60
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=79.52 E-value=2.1 Score=26.49 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 39 LKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 39 LKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
||++|..|+.++.+|+.+-..|+....|.
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~~~~~ 30 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKLHAFS 30 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Confidence 79999999999999999999888865554
No 61
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=79.14 E-value=2.9 Score=31.87 Aligned_cols=35 Identities=37% Similarity=0.473 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANAT 65 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 65 (78)
+..+|++.|++++.+|++++.+++.|+.-|++..-
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 41 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILI 41 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888888877766443
No 62
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=79.06 E-value=3.8 Score=24.31 Aligned_cols=27 Identities=26% Similarity=0.094 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
-+-|-.+|.+|+...+.+|+|+.-|+.
T Consensus 13 n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 13 NIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 345668999999999999999655544
No 63
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=79.00 E-value=3.9 Score=23.42 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQLEMENSI 59 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~ 59 (78)
++.-|++|..|+.+..+|..|-.-
T Consensus 10 LeEtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567799999999999999888643
No 64
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=77.36 E-value=4.2 Score=22.61 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~ 55 (78)
++.|..+|..|+..+.+|+.
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666665543
No 65
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=76.28 E-value=5.1 Score=23.33 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
|..|..+.++|+.+|++||.--+.|-
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq 30 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999988777664
No 66
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=76.25 E-value=7 Score=22.02 Aligned_cols=31 Identities=39% Similarity=0.508 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
|..|-|..||||.--|+-+++.|..--+.||
T Consensus 5 alkekvsalkeqflmlmfkvsalkekvsalk 35 (36)
T 3tq2_A 5 ALKEKVSALKEQFLMLMFKVSALKEKVSALK 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788899999999999999998887766665
No 67
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=76.11 E-value=2.1 Score=24.24 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~ 55 (78)
..++.|.++|.+|+..+.+|+.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666777777766665543
No 68
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=75.80 E-value=5.4 Score=22.35 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy8522 38 VLKEKIAELMERINQLEMENSILKANAT 65 (78)
Q Consensus 38 vLKe~I~eL~er~~~LE~EN~~Lk~~as 65 (78)
.|.++..+|..+++.|+.|=.-||.+..
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 5778899999999999999999998764
No 69
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=75.12 E-value=3.3 Score=23.50 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
+-.|..+..+|..+++.||.|=.-||.+.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 34577888888888888888888887654
No 70
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=74.98 E-value=5.5 Score=22.34 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 37 EVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
..|.++..||..+++.||.|=.-||.+.
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3577888999999999999988888753
No 71
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=74.74 E-value=2.8 Score=28.41 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC
Q psy8522 43 IAELMERINQLEMENSILKANA 64 (78)
Q Consensus 43 I~eL~er~~~LE~EN~~Lk~~a 64 (78)
..||..++.+|+.||.-||.-.
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl 31 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKV 31 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999865
No 72
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=74.57 E-value=3.1 Score=24.14 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~ 55 (78)
|.++.+.|..++.+|.+++..|+.
T Consensus 32 v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555566666666666555543
No 73
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=74.42 E-value=6.9 Score=29.55 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 16 FAYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 16 ~ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
+||+..-.+|.=+--.+-..+..|..++..|.+|+.+||..-.-++..
T Consensus 10 ~le~~~~~ik~~~~~~~~~~I~~Lq~~le~L~~KI~~LE~~v~~q~~~ 57 (323)
T 1lwu_B 10 EIENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKEL 57 (323)
T ss_dssp HHHHHTHHHHHHHHTTTHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554444444433444455556666666666666666554444444
No 74
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=73.66 E-value=10 Score=21.58 Aligned_cols=35 Identities=29% Similarity=0.325 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 30 FAVREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
|-|--|=|.|-..|..-.+++..|..||.-|+.+|
T Consensus 3 ~~~L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ElA 37 (37)
T 1t6f_A 3 YEALKENEKLHKEIEQKDNEIARLKKENKELAEVA 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhC
Confidence 45556777787888888888888888888877654
No 75
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=72.66 E-value=7.6 Score=25.11 Aligned_cols=30 Identities=30% Similarity=0.272 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
.+++.+..+++++.|.+++.+||.|-.-.|
T Consensus 87 l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 87 WKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666677777788888888887766554
No 76
>1aa0_A Fibritin, gpwac E; bacteriophage T4, structural protein, bacteriophag assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=72.48 E-value=8.4 Score=26.35 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=29.6
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLM--FAVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 21 MDLVKsHLm--~AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
..-||+|=. -|+--||+.+|..|.+|+.++..|+.
T Consensus 49 ~nsVk~~et~i~~~t~~v~t~k~~i~~~e~~vqalq~ 85 (113)
T 1aa0_A 49 TNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQE 85 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhccccchhhhheeecccccchhhhhhhhHHHHh
Confidence 346888874 68899999999999999999998874
No 77
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=71.41 E-value=8 Score=22.44 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~E 56 (78)
|-.|++--+++|.+|..|..+||..
T Consensus 14 VdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 14 VDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999864
No 78
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=70.51 E-value=4 Score=24.42 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8522 38 VLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 38 vLKe~I~eL~er~~~LE~EN 57 (78)
.|++++.+|..++.+|+.||
T Consensus 61 ~L~~~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 61 YMRRKNHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 34444444444444444444
No 79
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=70.09 E-value=5.3 Score=26.46 Aligned_cols=22 Identities=23% Similarity=0.287 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~ 55 (78)
.||..||++|+.++.|+.+|..
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKe 25 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKE 25 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888887753
No 80
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=69.91 E-value=6.2 Score=24.19 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8522 40 KEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 40 Ke~I~eL~er~~~LE~EN~~L 60 (78)
+..|++|+.++..|+.+|.-|
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777776654
No 81
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=69.56 E-value=2 Score=24.86 Aligned_cols=20 Identities=5% Similarity=0.169 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQL 53 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~L 53 (78)
..++.|.++|..|+..+.+|
T Consensus 45 ~~~~~L~~r~~~le~~l~~l 64 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLI 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666655554
No 82
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator protein; C-DI-GMP, ggdef, leucine zipper, signaling protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1} PDB: 3i5b_A*
Probab=68.84 E-value=7.5 Score=24.13 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHhcCC
Q psy8522 37 EVLKEKIAELMERINQLEMENSILKANATQETLGQLP 73 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q~~ 73 (78)
..|.+++.+|..++.+++.++.-|+..+.-|.+-.++
T Consensus 3 ~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~D~lTgL~ 39 (206)
T 3i5c_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVNSDGLTGLS 39 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCTTTCSB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCC
Confidence 4577888888888888998888888888777666554
No 83
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=68.30 E-value=9.6 Score=25.41 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSI 59 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~ 59 (78)
+.+++.|+.+|.+|...+..||.|-.+
T Consensus 17 ~~ei~~L~~ei~eLk~~ve~lEkERDF 43 (106)
T 4e61_A 17 QETIGSLNEEIEQYKGTVSTLEIEREF 43 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777788888888888888664
No 84
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=68.04 E-value=9.4 Score=25.10 Aligned_cols=39 Identities=26% Similarity=0.233 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhCCH
Q psy8522 28 LMFAVREEVEVLKEKIAELMERINQLEME--NSILKANATQ 66 (78)
Q Consensus 28 Lm~AVREEVEvLKe~I~eL~er~~~LE~E--N~~Lk~~asp 66 (78)
=...+|++++.|+-....|.+++..||.+ +..|+.-.+|
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~ 53 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQ 53 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 34577888888888888888888777654 3334444433
No 85
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=67.86 E-value=2.1 Score=24.53 Aligned_cols=20 Identities=20% Similarity=0.529 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQL 53 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~L 53 (78)
.+++.|.++|.+|+..+.+|
T Consensus 58 ~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56667777777766655544
No 86
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=66.96 E-value=11 Score=26.04 Aligned_cols=34 Identities=21% Similarity=0.420 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKANAT 65 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 65 (78)
...|+..|+.++.+..+.+.+|..+|..|...++
T Consensus 76 LqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 76 LEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 3466777777777777778888888887766543
No 87
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=66.26 E-value=3.2 Score=30.69 Aligned_cols=38 Identities=34% Similarity=0.369 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHhcC
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKANATQETLGQL 72 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q~ 72 (78)
.|+|.|++++.+|++++.+||.+=.-++.. .++.+.++
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~e~~~k~-n~~rl~~L 222 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQERSTANKA-NAERLKRL 222 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHH
Confidence 388889999999999999988875555542 34444443
No 88
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=66.25 E-value=7.9 Score=24.94 Aligned_cols=27 Identities=22% Similarity=0.128 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
.+.|+.+|++|.++..+|+.|-.-++.
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777766654
No 89
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=65.94 E-value=11 Score=20.82 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 41 EKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 41 e~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
..|..|++++.+||....-|++.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888887777664
No 90
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=65.93 E-value=12 Score=22.90 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 38 VLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 38 vLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
.|+++...|...+.+|..||..|+.
T Consensus 51 ~L~~~~~~l~~e~~~L~~e~~~L~~ 75 (80)
T 1nlw_A 51 KLEDSDRKAVHQIDQLQREQRHLKR 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666777777777777777664
No 91
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=65.02 E-value=19 Score=21.36 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 17 AYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSI 59 (78)
Q Consensus 17 ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~ 59 (78)
...|.+.++. ..++++.|+..+.+|..++.+|+..-.-
T Consensus 42 L~~Ai~YI~~-----L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 42 LDKATEYIQY-----MRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556655543 3566666777777777777777665443
No 92
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=63.51 E-value=13 Score=27.57 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
.+++|++.++.++.+-.++..++.+|++.+++
T Consensus 541 ~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~ 572 (597)
T 3oja_B 541 DLEQENIALEKQLDNKRAKQAELRQETSLKRQ 572 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 34567777777777777788888888877754
No 93
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=62.78 E-value=8.3 Score=25.70 Aligned_cols=25 Identities=32% Similarity=0.600 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 30 FAVREEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~~LE 54 (78)
+|-..|+|.||++=+|.|++.+.|.
T Consensus 71 l~ykreie~l~~~ekeime~ls~l~ 95 (99)
T 3aei_A 71 LVYKREIEKLKKREKEIMEELSKLR 95 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567899999999999999998874
No 94
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=62.76 E-value=14 Score=22.75 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
+..|.++...+.....+|+.+|..|+.
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~ 80 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKH 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556666666666654
No 95
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=62.20 E-value=26 Score=21.97 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
+.++.+..++++++.+..++|.|-.-|
T Consensus 23 drae~~e~~~k~~e~~~~~~E~Ei~sL 49 (101)
T 3u1c_A 23 DRAEQAEADKKAAEERSKQLEDDIVQL 49 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456667777777777777777776655
No 96
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.66 E-value=6.1 Score=26.01 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKANATQ 66 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 66 (78)
+.+.+.||++|..|+.+++..+.|..-|+.-+..
T Consensus 4 ~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~e 37 (97)
T 2eqb_B 4 GSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAK 37 (97)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4567788888888888888888777777654433
No 97
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=61.49 E-value=17 Score=20.18 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~E 56 (78)
|.+--....-|.+|..+|..||.+
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Q 29 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQ 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHH
Confidence 333344444455555555555544
No 98
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=61.05 E-value=11 Score=23.51 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 16 FAYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 16 ~ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
+|.|-| -|+.||. +.+.-+..++..|+.||+-||.
T Consensus 28 kiQQLm-kVN~~ls-----------~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 28 KVQQLM-KVNSSLS-----------DELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHH-HHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-HHhHhhh-----------HHHHHHHHHHHHHHhhhhhhcc
Confidence 455655 4555543 3444566667777888888874
No 99
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=60.88 E-value=9.7 Score=22.86 Aligned_cols=30 Identities=30% Similarity=0.481 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
-|.-+|.|...+..-..++..||.||--|-
T Consensus 12 ~Rkk~eeler~lrk~kk~iKklEdeNPWLG 41 (50)
T 1a92_A 12 GRKKLEELERDLRKLKKKIKKLEEDNPWLG 41 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCchh
Confidence 477888899999999999999999997653
No 100
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=59.66 E-value=24 Score=23.07 Aligned_cols=42 Identities=26% Similarity=0.216 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 17 AYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 17 ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
+.|=|+-+-..|-=.|++--..|++.|++|..++.+||.=-+
T Consensus 30 VQqELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs 71 (96)
T 1t3j_A 30 VQQEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQN 71 (96)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888889999999999999999999999986433
No 101
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=59.55 E-value=20 Score=21.02 Aligned_cols=28 Identities=4% Similarity=0.077 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
-++.|-.++..|-.++.+|..+-+.||.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667778888888888888887777775
No 102
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=59.54 E-value=12 Score=23.89 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 38 VLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 38 vLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
.|++++++|.+++..++.|...|++
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555555555555666666665554
No 103
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=59.24 E-value=12 Score=22.63 Aligned_cols=20 Identities=30% Similarity=0.286 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy8522 43 IAELMERINQLEMENSILKA 62 (78)
Q Consensus 43 I~eL~er~~~LE~EN~~Lk~ 62 (78)
|++|..++..|+.||.-|+.
T Consensus 52 I~~Lq~~~~~L~~e~~~L~~ 71 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLRT 71 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554
No 104
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=59.11 E-value=29 Score=21.50 Aligned_cols=27 Identities=26% Similarity=0.264 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
+.++.+..++++++.+..++|.|-.-|
T Consensus 23 d~ae~~e~~~k~~e~~~~~~E~ei~sL 49 (101)
T 3u59_A 23 DRAEQAEADKKQAEDRCKQLEEEQQGL 49 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345556666666666666666665555
No 105
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=58.84 E-value=20 Score=28.46 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
.|.+||.-||++|++|+++..+++.+-.-+-...
T Consensus 177 ~l~~eV~pLk~eLk~lE~eL~e~e~eL~~lll~i 210 (536)
T 3err_A 177 DMLKRVEPLRNELQKLEDDAKDNQQKLEALLLQV 210 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5899999999999999999999998866554443
No 106
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=58.55 E-value=12 Score=23.84 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 26 SHLMFAVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 26 sHLm~AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
.|-|--.+++...|+++|.++.+++.+|..
T Consensus 6 ~~~~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 6 HHRMKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 466777888999999999999999988863
No 107
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=58.07 E-value=11 Score=26.96 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELME 48 (78)
Q Consensus 32 VREEVEvLKe~I~eL~e 48 (78)
.|++++.|+++|.+|++
T Consensus 77 LR~r~~~Le~~L~~Li~ 93 (252)
T 3e98_A 77 LRERNIEMRHRLSQLMD 93 (252)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555544443
No 108
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=57.91 E-value=15 Score=27.64 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 17 AYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 17 ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
+.+-++..=+.-.=.++..++.|+++|..|+.++.++..
T Consensus 18 ik~~~~~~~~~~I~~Lq~~le~L~~KI~~LE~~v~~q~~ 56 (323)
T 1lwu_B 18 VKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKE 56 (323)
T ss_dssp HHHHHHTTTHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554333344455788899999999999999987764
No 109
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=57.31 E-value=23 Score=19.83 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQ 52 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~ 52 (78)
|+.||+...||.|+-...-+.|
T Consensus 13 aieeeiqaikeeiaaikyliaq 34 (36)
T 1bb1_B 13 AIEEEIQAIKEEIAAIKYLIAQ 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5778888888888876665554
No 110
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=57.14 E-value=23 Score=19.58 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
|...|+..||..|+-|.-.+..|.+
T Consensus 6 alkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5566777777777777776666654
No 111
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=57.00 E-value=33 Score=21.46 Aligned_cols=39 Identities=10% Similarity=0.109 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 17 AYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 17 ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~E 56 (78)
+++|.++++..+-++ .+-.+.|.+.+..+.+++..++.+
T Consensus 86 ~~eA~~~l~~r~~~l-~~~~~~l~~~l~~l~~~i~~~~~~ 124 (133)
T 1fxk_C 86 FEDAMESIKSQKNEL-ESTLQKMGENLRAITDIMMKLSPQ 124 (133)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999888877764 444555555555555555555443
No 112
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=56.94 E-value=15 Score=23.01 Aligned_cols=42 Identities=14% Similarity=0.065 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q psy8522 25 KSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQ 66 (78)
Q Consensus 25 KsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 66 (78)
|..=-.+=-+-++.|..+|.+..+.+..|..|..-+|+-.+|
T Consensus 31 K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl~p 72 (72)
T 3nmd_A 31 KIEELRQRDALIDELELELDQKDELIQMLQNELDKYRSVIRP 72 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 444444444558889999999999999999998888876665
No 113
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=56.18 E-value=23 Score=27.32 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
+..+|+..||++|++|+++..+++.+-.-+
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888887775443
No 114
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=56.13 E-value=24 Score=26.87 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSI 59 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~ 59 (78)
+.++|+..||++|++|+++..+++.+-.-
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 68 ALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888776543
No 115
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=55.39 E-value=33 Score=21.02 Aligned_cols=31 Identities=23% Similarity=0.085 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
++-=.-|-.+|.+|+...++-|+|+.-|+.+
T Consensus 17 Kq~n~~L~~kv~~Le~~c~e~eQEieRL~~L 47 (58)
T 3a2a_A 17 KQMNVQLAAKIQHLEFSCSEKEQEIERLNKL 47 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456678999999999999998766654
No 116
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=55.09 E-value=36 Score=22.58 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELM 47 (78)
Q Consensus 32 VREEVEvLKe~I~eL~ 47 (78)
...++..||.++..|+
T Consensus 23 L~~ei~eLk~~ve~lE 38 (106)
T 4e61_A 23 LNEEIEQYKGTVSTLE 38 (106)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555554
No 117
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=55.02 E-value=23 Score=19.72 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 38 VLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 38 vLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
.|..+..||..++..|+.|=.-||.+
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 46678888888999888888877764
No 118
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=53.99 E-value=26 Score=27.74 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSI 59 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~ 59 (78)
++.+|+..||++|++|+++..+++.+-.-
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888877543
No 119
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=53.81 E-value=28 Score=20.57 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=25.0
Q ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q psy8522 26 SHLMFAVREEV-----EVLKEKIAELMERINQLEME 56 (78)
Q Consensus 26 sHLm~AVREEV-----EvLKe~I~eL~er~~~LE~E 56 (78)
.+||-|++.|. +.|+.++.+..+|..+|..-
T Consensus 41 e~l~~a~k~e~~~~~k~~l~~k~~eYl~RAE~Lk~~ 76 (85)
T 2v6x_A 41 DYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQLKKH 76 (85)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777888754 77999999999999998853
No 120
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=53.81 E-value=30 Score=20.06 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
+++...|+.|.||..++..|+.|-.-||
T Consensus 49 ~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 49 DALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566678888888888888888876665
No 121
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=53.74 E-value=26 Score=27.88 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
+..+|+..||++|++|+++..++|.+-.
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~~ 102 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNLR 102 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888899999999999888887754
No 122
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=51.82 E-value=28 Score=23.09 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
|.+-+.|+.+|.+|+-+|..||....
T Consensus 48 r~~~~~l~~~iReLEq~NDDLER~~R 73 (111)
T 2v66_B 48 RAIKEQLHKYVRELEQANDDLERAKR 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 44444455555555555555555443
No 123
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=51.81 E-value=11 Score=24.51 Aligned_cols=17 Identities=53% Similarity=0.546 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELM 47 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~ 47 (78)
.+-|||+.||+.|.-|-
T Consensus 56 QideeV~~LKe~IdaLN 72 (83)
T 1zke_A 56 QLSEEVERLKELINALN 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47899999999998763
No 124
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=51.63 E-value=9.1 Score=20.84 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
++++.+|.+|..|..+..+++.+=.-+
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~ 30 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARL 30 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888887776666554433
No 125
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=51.50 E-value=34 Score=19.95 Aligned_cols=33 Identities=27% Similarity=0.305 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q psy8522 20 IKDLVKSHLMFAVR----EEVEVLKEKIAELMERINQ 52 (78)
Q Consensus 20 AMDLVKsHLm~AVR----EEVEvLKe~I~eL~er~~~ 52 (78)
=+.+|++-+-=|.. +||..|++.++||...+.+
T Consensus 9 Q~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 9 QIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHh
Confidence 34467776666654 8999999999999876654
No 126
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A
Probab=51.24 E-value=41 Score=24.95 Aligned_cols=38 Identities=16% Similarity=0.521 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
-|.+=|=+.+++|+.++.|...+.+|.+....+-.|+.
T Consensus 109 nDv~~Ta~~l~lr~~l~~l~~~L~~l~~~L~~~A~~~~ 146 (359)
T 2fel_A 109 QDVIDTSLMLRLKMAAEIIATRLGHLIDTLGDLASRDG 146 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 37788888999999999999999999999998887763
No 127
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=51.10 E-value=47 Score=21.45 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 17 AYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 17 ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
+++|.+.++..+-++ .+.++.|.+.|.++.+++..++..=
T Consensus 96 ~~eA~~~l~~ri~~l-~~~l~~l~~~l~~l~~~i~~~~~~l 135 (151)
T 2zdi_C 96 IDEAISFLEKRLKEY-DEAIKKTQGALAELEKRIGEVARKA 135 (151)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999888774 5667777777777777777766543
No 128
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=50.91 E-value=22 Score=22.87 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~E 56 (78)
.+.++..|++++..|...+.+++.+
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999865
No 129
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=50.83 E-value=10 Score=24.05 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSI 59 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~ 59 (78)
+++.|.++|.+|...+..||.|-.+
T Consensus 2 ei~~L~~ei~eLk~~ve~lEkERDF 26 (82)
T 3tq7_B 2 QILELNQQLVDLKLTVDGLEKERDF 26 (82)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777654
No 130
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=50.79 E-value=38 Score=23.18 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 23 LVKSHLMFAVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 23 LVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
-+..|+.+..+ -+..++.+|.+|+.++.+||.
T Consensus 40 ~~~~h~~~~~~-~i~~~~~~i~~~~~~l~~l~~ 71 (228)
T 1flk_A 40 LLESQLSRHDQ-MLSVHDIRLADMDLRFQVLET 71 (228)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhc
Confidence 34677777664 478888888888888877764
No 131
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=50.61 E-value=18 Score=23.74 Aligned_cols=21 Identities=43% Similarity=0.575 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8522 37 EVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN 57 (78)
+.|++.++||-+++.+||.|-
T Consensus 45 ~~L~e~~keLh~~I~~LEeEK 65 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNLEAEK 65 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 568888888888888887763
No 132
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=50.54 E-value=24 Score=22.35 Aligned_cols=22 Identities=9% Similarity=0.234 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE 54 (78)
.++++.|..+|..|..++.+|+
T Consensus 22 ~~~l~~L~~~~~~L~~~l~~l~ 43 (168)
T 1buu_A 22 EVKLANMEAEINTLKSKLELTN 43 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555544
No 133
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=50.14 E-value=25 Score=19.34 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~ 55 (78)
-|||.-|..-+.+|.+|+..||.
T Consensus 5 ee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888899999988874
No 134
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=49.74 E-value=33 Score=24.48 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
.|++.+.|+.+|.+|+-.|.-||....+.
T Consensus 100 l~~~~~~l~~~ireLEq~NDdlEr~~R~~ 128 (189)
T 2v71_A 100 TRAIKEQLHKYVRELEQANDDLERAKRAT 128 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45666666666666666666666665554
No 135
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=49.17 E-value=23 Score=21.72 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=24.8
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q psy8522 26 SHLMFAVREE-----VEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 26 sHLm~AVREE-----VEvLKe~I~eL~er~~~LE~E 56 (78)
.+||-|++.| -+.++.+|.+..+|..+|..-
T Consensus 43 e~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~LK~~ 78 (93)
T 1wfd_A 43 DMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKY 78 (93)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888764 467899999999999998754
No 136
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=48.87 E-value=25 Score=21.04 Aligned_cols=18 Identities=44% Similarity=0.578 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8522 39 LKEKIAELMERINQLEME 56 (78)
Q Consensus 39 LKe~I~eL~er~~~LE~E 56 (78)
|..-|+.|.+.+..||.|
T Consensus 29 lekiianlrdeiarlene 46 (52)
T 3he5_B 29 LEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555555443
No 137
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=48.49 E-value=35 Score=19.87 Aligned_cols=28 Identities=32% Similarity=0.368 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 19 HIKDLVKSHLMFAVREEVEVLKEKIAEL 46 (78)
Q Consensus 19 QAMDLVKsHLm~AVREEVEvLKe~I~eL 46 (78)
.-||.+|..+.==||.|+--+|+.|-+-
T Consensus 7 ~dle~~KqEIL~E~RkElqK~K~EIIeA 34 (45)
T 1use_A 7 SDLQRVKQELLEEVKKELQKVKEEIIEA 34 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588899999999999999999988654
No 138
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=48.38 E-value=8.9 Score=24.70 Aligned_cols=18 Identities=33% Similarity=0.569 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8522 39 LKEKIAELMERINQLEME 56 (78)
Q Consensus 39 LKe~I~eL~er~~~LE~E 56 (78)
|..+|-||+.++.+|+.|
T Consensus 63 LQKKImdLE~~~~~l~~e 80 (88)
T 1uuj_A 63 LQKKVMELESKLNEAKEE 80 (88)
T ss_dssp HHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566666666666554
No 139
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=47.93 E-value=8.5 Score=20.23 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQ 52 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~ 52 (78)
||-+++|++.|++|+..
T Consensus 3 ~e~mr~Q~~~lveKvq~ 19 (26)
T 1oeg_A 3 VEDMQRQWAGLVEKVQA 19 (26)
T ss_dssp HHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57788999999998753
No 140
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=47.19 E-value=40 Score=19.58 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 37 EVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
+.|+++++++.+++.+|+.--..|.
T Consensus 42 ~~L~~~~~~l~~~i~~L~~~~~~L~ 66 (99)
T 1q08_A 42 GIVQERLQEVEARIAELQSMQRSLQ 66 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666555444443
No 141
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=47.07 E-value=25 Score=22.65 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=24.9
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q psy8522 26 SHLMFAVREE------VEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 26 sHLm~AVREE------VEvLKe~I~eL~er~~~LE~ 55 (78)
.+||-|++-| -+.|+.++.+..+|..+|..
T Consensus 46 e~l~~alk~e~~~~~~k~~lr~K~~eYl~RAE~LK~ 81 (117)
T 2cpt_A 46 QYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKE 81 (117)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788765 57899999999999999986
No 142
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=46.95 E-value=15 Score=23.35 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q psy8522 37 EVLKEKIAELMERINQLEMENSILKANATQ 66 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~~Lk~~asp 66 (78)
.++.++|..|+.++.+|+.+-..|+....|
T Consensus 19 ~~~~~~l~~L~~~~~~L~~~l~~l~~~~~~ 48 (168)
T 1buu_A 19 RAIEVKLANMEAEINTLKSKLELTNKLHAF 48 (168)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 578889999999999999999988875444
No 143
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=46.82 E-value=35 Score=18.78 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
||-.|...++.-+..|-|||+|-.-|.
T Consensus 2 evaqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 455555555555666666666654443
No 144
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=46.72 E-value=27 Score=21.53 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
.|..||.+-=.-.+|+.++.-|..|=.+||.+
T Consensus 54 LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk~ 85 (86)
T 3swk_A 54 FRQDVDNASLARLDLERKVESLQEEIAFLKKL 85 (86)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444455555678899999999999888865
No 145
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=46.63 E-value=30 Score=29.68 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy8522 45 ELMERINQLEMENSILKAN 63 (78)
Q Consensus 45 eL~er~~~LE~EN~~Lk~~ 63 (78)
+|+++++.|+.||..|++-
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq 1038 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTE 1038 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456666777777777763
No 146
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=46.55 E-value=23 Score=24.93 Aligned_cols=46 Identities=15% Similarity=0.256 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 22 DLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 22 DLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
.+++...+.+|--..|.|-.|+.+|-.|+.+|.++-+.+|.-.+|.
T Consensus 93 s~~red~L~~~laqLe~ls~qL~~ls~~v~~L~~q~~~~~~~~~~~ 138 (140)
T 3iyn_Q 93 SSARDDKLTALLAQLDSLTRELNVVSQQLLDLRQQVSALKASSPPN 138 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSCC----
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 5666666777788899999999999999999998887777665553
No 147
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=46.21 E-value=31 Score=20.72 Aligned_cols=29 Identities=24% Similarity=0.157 Sum_probs=24.2
Q ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q psy8522 27 HLMFAVREE-----VEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 27 HLm~AVREE-----VEvLKe~I~eL~er~~~LE~ 55 (78)
+|+-|++.| -+.++.+|.+-.+|..+|..
T Consensus 40 ~l~~~lk~e~d~~~k~~ir~K~~eY~~RAE~Lk~ 73 (83)
T 2v6y_A 40 VLSQIIVLYPESVARTAYEQMINEYKKRISYLEK 73 (83)
T ss_dssp HHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888877 57899999999999988854
No 148
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=45.56 E-value=48 Score=19.92 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 17 AYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 17 ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
.+.|..-++.-.-+. ..+++.|.+++..+..++..|+.
T Consensus 68 ~~ea~~~L~~~~e~i-e~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 68 KDKAVAELKEKIETL-EVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554443 45555555555555555555543
No 149
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=45.38 E-value=35 Score=19.51 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 17 AYHIKDLVKSHLMFAVREEVEVLKEKIAELMER 49 (78)
Q Consensus 17 ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er 49 (78)
|.+-+|.|-..+- +..+|.+.||+++..|.++
T Consensus 25 VD~FLd~v~~~~~-~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 25 VNEFLAQVRKDYE-IVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 4444444443332 3445555555555555544
No 150
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=45.27 E-value=24 Score=20.58 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8522 35 EVEVLKEKIAELMERINQ 52 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~ 52 (78)
.++.|.++|..|+..+.+
T Consensus 49 ~~~~Le~rl~~le~~l~~ 66 (96)
T 1pyi_A 49 YVFFLEDRLAVMMRVLKE 66 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555544443
No 151
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=44.85 E-value=25 Score=22.62 Aligned_cols=20 Identities=30% Similarity=0.420 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQ 52 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~ 52 (78)
.++++.||++|..|++++.+
T Consensus 95 ~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 95 KEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777766554
No 152
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=44.72 E-value=21 Score=27.16 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
..+|+..||++|++|+++..+++.+-.-+-
T Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 2dq3_A 73 IQNRVKELKEEIDRLEEELRKVEEELKNTL 102 (425)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788889999999999888887755443
No 153
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=44.65 E-value=65 Score=21.23 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=17.9
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 19 HIKDLVKSHL---MFAVREEVEVLKEKIAELMERINQ 52 (78)
Q Consensus 19 QAMDLVKsHL---m~AVREEVEvLKe~I~eL~er~~~ 52 (78)
..++-+|.++ +.=-+..|..|+.+|.+|+..+..
T Consensus 22 reie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e 58 (120)
T 3i00_A 22 REISGLKAQLENMKTESQRVVLQLKGHVSELEADLAE 58 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455443 233455666666766666654443
No 154
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=44.43 E-value=48 Score=20.65 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~E 56 (78)
..+.||..|+-+|.++..+++++...
T Consensus 31 ~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 31 DNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34667777777777777776666553
No 155
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=43.73 E-value=30 Score=21.07 Aligned_cols=18 Identities=22% Similarity=0.608 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8522 29 MFAVREEVEVLKEKIAEL 46 (78)
Q Consensus 29 m~AVREEVEvLKe~I~eL 46 (78)
-||.|.||..||..-+.+
T Consensus 12 VYaLkDqV~eL~qe~k~m 29 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKM 29 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 488888888887654443
No 156
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=43.55 E-value=38 Score=24.17 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
.|++.+..++++|..++.+|..|..-+|.
T Consensus 49 ~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~ 77 (189)
T 2v71_A 49 AQLVQAEQRNRDLQADNQRLKYEVEALKE 77 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777777666554
No 157
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=43.17 E-value=40 Score=24.22 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
...+++.|++++++|.++..++..|-..+|.....|
T Consensus 64 l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE 99 (213)
T 4ani_A 64 AKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQE 99 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777788888888777777776666655444
No 158
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=42.97 E-value=29 Score=17.11 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQ 52 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~ 52 (78)
+|.+|+|+..+.+++++
T Consensus 7 ~e~ik~q~~~i~e~i~~ 23 (26)
T 1oef_A 7 VEDMQRQWAGLVEKVQA 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 57788888888888764
No 159
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=42.93 E-value=37 Score=21.50 Aligned_cols=31 Identities=19% Similarity=0.182 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
+++|+.+++.|+.|.+.|..|..=-.-.+.+
T Consensus 40 h~~ie~~~eEi~~LkeEN~~L~el~~~~~~l 70 (79)
T 2zxx_A 40 HKEIEQKDSEIARLRKENKDLAEVAEHVQYM 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888877775544444333
No 160
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=42.79 E-value=19 Score=22.25 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
+..++-+|.+..+=...-...|.+-..||.-+
T Consensus 27 ~~~~edfk~KyE~E~~~R~~~E~d~~~Lrkdv 58 (86)
T 3swk_A 27 AEDIMRLREKLQEEMLQREEAENTLQSFRQDV 58 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 45555566555554444445555555555443
No 161
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1
Probab=42.47 E-value=61 Score=24.29 Aligned_cols=36 Identities=14% Similarity=0.351 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 22 DLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 22 DLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
|.+=|=+.+++|++++.|...+.+|.+....+-.|+
T Consensus 98 D~~~Ta~~l~~r~~l~~l~~~l~~L~~~L~~~A~~~ 133 (403)
T 1dof_A 98 DIIDTAWALLIRRALAAVKEKARAVGDQLASMARKY 133 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777788899999999999999999999999887775
No 162
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=41.86 E-value=33 Score=23.43 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSI 59 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~ 59 (78)
.++.|+++|.+|..++..||.|-+-
T Consensus 62 ~leeL~~ki~eL~~kvA~le~e~~~ 86 (125)
T 2pms_C 62 KLEELSDKIDELDAEIAKLEDQLKA 86 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888888877653
No 163
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Probab=41.46 E-value=64 Score=24.25 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 22 DLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 22 DLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
|.+=|=+.+++|+.++.|...+.+|.+....+-.|+
T Consensus 95 D~~~Ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~ 130 (429)
T 1c3c_A 95 DVLDTANSLALVEAGKILLESLKEFCDVLWEVANRY 130 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777788899999999999999999999999888775
No 164
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=41.46 E-value=37 Score=21.71 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
+.+-|+.|.+++++|+.++.+|..+-
T Consensus 30 l~~~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 30 LPKTVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666655553
No 165
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=41.31 E-value=65 Score=20.50 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 37 EVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
+.+.++|..|.+++.+|+.|..-|+.-
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777654
No 166
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Probab=41.24 E-value=64 Score=24.49 Aligned_cols=36 Identities=11% Similarity=0.402 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 22 DLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 22 DLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
|.+=|=+.+++|+.++.|...+.+|.+....+-.|+
T Consensus 106 Dv~~Ta~~L~lr~~l~~l~~~l~~L~~~L~~~A~~~ 141 (451)
T 3c8t_A 106 DIMDTATVLQIRDGLALISRRIESVRKALAALARNH 141 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 777788899999999999999999999999888775
No 167
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=41.07 E-value=51 Score=21.74 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh
Q psy8522 33 REEVEVLKEKIAELM---ERINQLEMENSILKAN 63 (78)
Q Consensus 33 REEVEvLKe~I~eL~---er~~~LE~EN~~Lk~~ 63 (78)
...++.||+.|+.+. +++.-|+....+++.-
T Consensus 37 Q~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~D 70 (96)
T 3fx0_A 37 QEVIDKLKEEAEQHKIVMETVPVLKAQADIYKAD 70 (96)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 456788888888777 7888888888777753
No 168
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=41.06 E-value=53 Score=19.14 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE 54 (78)
|-++++.|..++.++-.|+..||
T Consensus 21 v~~~l~~Lt~kL~~vt~rle~lE 43 (47)
T 1aq5_A 21 VEELINTLQQKLEAVAKRIEALE 43 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788889999998888888884
No 169
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=41.01 E-value=58 Score=19.63 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q psy8522 20 IKDLVKSHLMFAVREEVEVLKEKIAELME-------RINQLEME 56 (78)
Q Consensus 20 AMDLVKsHLm~AVREEVEvLKe~I~eL~e-------r~~~LE~E 56 (78)
.||.+| +.|=|...|.|.+.+++..|+. |.+.+|.-
T Consensus 3 ~m~aiK-kkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l 45 (75)
T 3mtu_A 3 SMDAIK-KKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELI 45 (75)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 466665 3456667777777777777776 66665543
No 170
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1
Probab=40.95 E-value=65 Score=24.40 Aligned_cols=36 Identities=8% Similarity=0.278 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 22 DLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 22 DLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
|.+=|=+.+++|+.++.|...+.+|.+....+-.|+
T Consensus 112 D~~~Ta~~L~~r~~l~~l~~~l~~L~~~L~~~A~~~ 147 (454)
T 1q5n_A 112 DILDTACILQCRDALAIVQNQVQQCYETALSQAQTY 147 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777788899999999999999999999999888775
No 171
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Probab=40.82 E-value=66 Score=24.35 Aligned_cols=36 Identities=14% Similarity=0.495 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 22 DLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 22 DLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
|.+=|=+.+++|+.++.|...+.+|.+....+-.|+
T Consensus 108 D~~~Ta~~l~lr~~l~~l~~~l~~L~~~L~~~A~~~ 143 (450)
T 1re5_A 108 DAMDTGLVLQLRDALDLIEADLGKLADTLSQQALKH 143 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 677777889999999999999999999999887775
No 172
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=40.71 E-value=21 Score=23.40 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8522 37 EVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN 57 (78)
+.|++.++||-+++.+||.|-
T Consensus 45 ~~L~e~~keLh~~I~~lEeEK 65 (107)
T 1ytz_T 45 DKLRDKAKELWDWLYQLQTEK 65 (107)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888887763
No 173
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus}
Probab=40.70 E-value=65 Score=24.66 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 22 DLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 22 DLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
|.+=|=+.+++|+.++.|...+.+|.+....+-.|+.
T Consensus 112 Dv~~Ta~~l~lr~~l~~l~~~l~~L~~~L~~~A~~~~ 148 (462)
T 2e9f_A 112 DQVATDLRLYLRGAIDELLALLLALRRVLVREAEKHL 148 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 7788888999999999999999999999998887764
No 174
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Probab=40.46 E-value=69 Score=24.67 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
-|.+=|=+.+++|+.++.|...+.+|.+....+-.|+.
T Consensus 145 nDv~~Ta~~L~lr~~l~~l~~~L~~L~~~L~~~A~~~~ 182 (478)
T 1jsw_A 145 NDAYPTGFRIAVYSSLIKLVDAINQLREGFERKAVEFQ 182 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36777778899999999999999999999999888763
No 175
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A
Probab=40.45 E-value=66 Score=24.67 Aligned_cols=36 Identities=11% Similarity=0.291 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 22 DLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 22 DLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
|.+=|=+.+++|+.++.|...+.+|.+....+-.|+
T Consensus 117 Dv~~Ta~~l~lr~~l~~l~~~L~~L~~~L~~~A~~~ 152 (468)
T 1k7w_A 117 DQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIE 152 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 777888899999999999999999999999888775
No 176
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=40.07 E-value=63 Score=20.13 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
-+-.+.|+++|+.|..++..|+..=..++..
T Consensus 87 ~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~ 117 (133)
T 1fxk_C 87 EDAMESIKSQKNELESTLQKMGENLRAITDI 117 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666555555443
No 177
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=39.91 E-value=37 Score=21.84 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE 54 (78)
+++++.+++.|..|.+.|.+|.
T Consensus 44 h~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 44 HKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666654
No 178
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=39.89 E-value=77 Score=20.72 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Q psy8522 32 VREEVEVLKEKIAELM---ERINQLEMENSILKA 62 (78)
Q Consensus 32 VREEVEvLKe~I~eL~---er~~~LE~EN~~Lk~ 62 (78)
-...++.||+.|..+. +++.-|+...-+++.
T Consensus 21 kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~ 54 (94)
T 3jsv_C 21 KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKA 54 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666555 566666665555554
No 179
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=39.88 E-value=62 Score=20.71 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
+.+.|......|..++.+|..||+-+
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~ 74 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRL 74 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 180
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Probab=39.52 E-value=70 Score=24.26 Aligned_cols=37 Identities=14% Similarity=0.369 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
-|.+=|=+.+++|+.++.|...+.+|.+....+-.|+
T Consensus 106 nDv~~Ta~~L~lr~~l~~l~~~l~~L~~~L~~~A~~~ 142 (444)
T 2pfm_A 106 TDVVDTALSYILKQANEIILKDLENFVSILANKAKEH 142 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3777788899999999999999999999999888775
No 181
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=39.46 E-value=26 Score=25.24 Aligned_cols=31 Identities=32% Similarity=0.467 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKANATQ 66 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 66 (78)
+|++.|+.+|.+|..++..+. +.+||..|--
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~--d~~lR~~AEf 89 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEME--HRYLRLYADF 89 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 677888888888888887664 5577766543
No 182
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}
Probab=39.39 E-value=77 Score=24.19 Aligned_cols=37 Identities=16% Similarity=0.344 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
-|.+=|=+.+++|+.++.|...+.+|.+....+-.|+
T Consensus 95 nDv~~Ta~~L~lr~~~~~l~~~L~~l~~~L~~~A~~~ 131 (438)
T 4eei_A 95 SDIIDSALSLQIRDSMSYVIKDLEALCDSLLTKAEET 131 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3777888889999999999999999999998887775
No 183
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1
Probab=38.93 E-value=63 Score=24.69 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 22 DLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 22 DLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
|.+=|=+.+++|+.++.|...+.+|.+....+-.|+
T Consensus 111 D~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~ 146 (457)
T 1tj7_A 111 DQVATDLKLWCKDTVSELLTANRQLQSALVETAQNN 146 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 777788899999999999999999999998887765
No 184
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=38.92 E-value=34 Score=20.24 Aligned_cols=18 Identities=44% Similarity=0.556 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8522 44 AELMERINQLEMENSILK 61 (78)
Q Consensus 44 ~eL~er~~~LE~EN~~Lk 61 (78)
+.|+..+..||.||.-||
T Consensus 6 aqlenevaslenenetlk 23 (49)
T 3he5_A 6 AQLENEVASLENENETLK 23 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHH
Confidence 445555555555555554
No 185
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A
Probab=38.11 E-value=74 Score=24.69 Aligned_cols=37 Identities=16% Similarity=0.062 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
-|.+=|=+.+++|++++.|...+.+|.+....+-.|+
T Consensus 142 nDv~~Ta~~L~~r~~l~~l~~~L~~L~~~L~~~A~~~ 178 (468)
T 3r6q_A 142 NDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEF 178 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3677788899999999999999999999998887775
No 186
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=37.42 E-value=73 Score=19.74 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 40 KEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 40 Ke~I~eL~er~~~LE~EN~~Lk~ 62 (78)
..+|..|+.-|+.|-.|-+++..
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~ 48 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQR 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHH
Confidence 46788888888888888777754
No 187
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1
Probab=37.40 E-value=63 Score=24.82 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy8522 22 DLVKSHLMFAVREEVE-VLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 22 DLVKsHLm~AVREEVE-vLKe~I~eL~er~~~LE~EN 57 (78)
|.|=|=+.+++|+.++ .|...+.+|.+....+-.|+
T Consensus 142 D~~~Ta~~L~lr~~l~~~l~~~l~~L~~~L~~~A~~~ 178 (466)
T 1vdk_A 142 DTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAF 178 (466)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6666778999999998 99999999999999888775
No 188
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=37.12 E-value=41 Score=19.05 Aligned_cols=19 Identities=21% Similarity=0.316 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8522 37 EVLKEKIAELMERINQLEM 55 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~ 55 (78)
|.|.+||.-|+.|+..|..
T Consensus 19 e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 19 EDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455666666666655543
No 189
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=36.93 E-value=74 Score=20.95 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8522 43 IAELMERINQLEMENSILK 61 (78)
Q Consensus 43 I~eL~er~~~LE~EN~~Lk 61 (78)
|..|..++++||.|..--|
T Consensus 42 v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 42 VLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678899999999866543
No 190
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=36.78 E-value=44 Score=24.97 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 39 LKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 39 LKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
|++.++++..++.+|+.|+.-|++
T Consensus 73 L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 73 LMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455555555555555555555543
No 191
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.71 E-value=34 Score=25.90 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE 54 (78)
-++++.+.|++.|++++.++.+++
T Consensus 14 ~l~~~~~~l~~~~~~~~~~~~~~~ 37 (403)
T 4etp_A 14 ALKEKIAALKEKIKDTELGMKELN 37 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666555544
No 192
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=36.38 E-value=13 Score=20.14 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy8522 40 KEKIAELMERINQLE 54 (78)
Q Consensus 40 Ke~I~eL~er~~~LE 54 (78)
+..|..|++++.+||
T Consensus 51 ~~~~~~Le~rl~~LE 65 (66)
T 1d66_A 51 RAHLTEVESRLERLE 65 (66)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHc
Confidence 345666777776666
No 193
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A
Probab=35.94 E-value=85 Score=24.17 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEV-LKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEv-LKe~I~eL~er~~~LE~EN 57 (78)
-|.|=|=+.+++|++++. |...+.+|.+....+-.|+
T Consensus 141 nD~~~Ta~~L~lr~~l~~~l~~~l~~L~~~L~~~A~~~ 178 (467)
T 1fur_A 141 NDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAF 178 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366777788999999997 9999999999999888775
No 194
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp}
Probab=35.93 E-value=69 Score=24.41 Aligned_cols=37 Identities=22% Similarity=0.421 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVE-VLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEVE-vLKe~I~eL~er~~~LE~EN 57 (78)
-|.+=|=+.+++|+.++ .|...+.+|.+....+-.|+
T Consensus 127 nDv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~~~A~~~ 164 (459)
T 3bhg_A 127 EDINNLAYALMIKQAIAQVIQPTIAEIMGSITLLGKQH 164 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 37777888999999999 79999999999999887775
No 195
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=35.74 E-value=72 Score=19.19 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
..+.+.++++|.+|.+++..++.+-.-|
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~~~~~~l 97 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELERELRRI 97 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 196
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=35.51 E-value=57 Score=20.69 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
.=+.+|..|+.+|++|...+..+-.
T Consensus 49 ~R~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 49 SRRAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4467899999999999988876544
No 197
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=35.16 E-value=53 Score=22.11 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
+=+.+|..|+.+|++|...+...-.
T Consensus 79 ~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 79 NRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999988876544
No 198
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=35.12 E-value=79 Score=23.85 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~E 56 (78)
.+.+..|++.+..+..++.+|+..
T Consensus 17 ~~~i~~L~~~l~~~~~ki~~L~~~ 40 (319)
T 1fzc_C 17 DSSIRYLQEIYNSNNQKIVNLKEK 40 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555443
No 199
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=35.11 E-value=20 Score=23.92 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 27 HLMFAVREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 27 HLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
+.-=+|++++-+|..--..+-+++..|+.||..|..
T Consensus 70 q~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~G 105 (112)
T 1x79_B 70 QAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQG 105 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 444578888888888888888888999999988864
No 200
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A
Probab=34.93 E-value=73 Score=24.32 Aligned_cols=36 Identities=14% Similarity=0.272 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy8522 22 DLVKSHLMFAVREEVE-VLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 22 DLVKsHLm~AVREEVE-vLKe~I~eL~er~~~LE~EN 57 (78)
|.+=|=+.+++|+.++ .|...+..|.+....+-.|+
T Consensus 124 Dv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~~~A~~~ 160 (465)
T 2qga_B 124 DINNVAYATCLKACLNDVVIPCLEKIMLKLKDLAVEY 160 (465)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6777888999999999 89999999999999887775
No 201
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=34.33 E-value=46 Score=20.00 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8522 37 EVLKEKIAELMERINQLEME 56 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~E 56 (78)
|.|+.+|..|+.+++.++..
T Consensus 5 e~l~~~~~~l~~~l~~~~~~ 24 (148)
T 3pbf_A 5 EELQTELYEIKHQILQTMGV 24 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666665544
No 202
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=34.24 E-value=84 Score=19.49 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8522 37 EVLKEKIAELMERINQLEME 56 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~E 56 (78)
+.+.+++++|.+++..||.+
T Consensus 114 ~~l~~~~~~l~~~l~~le~~ 133 (139)
T 3eff_K 114 EAYTRTTRALHERFDRLERM 133 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777777654
No 203
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=34.22 E-value=77 Score=19.68 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 27 HLMFAVREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 27 HLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
-..+-.---++.|+..|.+|..++.++.++.+-++.
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344555667888888888888888888888877765
No 204
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=34.19 E-value=78 Score=22.37 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~E 56 (78)
+.+++..|.+++.+|.+++.+|+..
T Consensus 104 l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 104 VASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444555555555555555555555
No 205
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=33.97 E-value=65 Score=23.63 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8522 42 KIAELMERINQLEMENSIL 60 (78)
Q Consensus 42 ~I~eL~er~~~LE~EN~~L 60 (78)
+|..|.+++..|+.|-.-|
T Consensus 186 eie~L~~~~~~L~eEi~~L 204 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARL 204 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 206
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Probab=33.74 E-value=79 Score=24.12 Aligned_cols=36 Identities=11% Similarity=0.252 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy8522 22 DLVKSHLMFAVREEVE-VLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 22 DLVKsHLm~AVREEVE-vLKe~I~eL~er~~~LE~EN 57 (78)
|.+=|=+.+++|+.++ .|...+.+|.+....+-.|+
T Consensus 125 Dv~~Ta~~L~lr~~l~~~l~~~L~~L~~~L~~~A~~~ 161 (462)
T 2ptr_A 125 DINNLSHALMLKTARDEVILPYWRQLIDGLKDLAVQY 161 (462)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6777788999999999 59999999999999888775
No 207
>2nr5_A Hypothetical protein SO2669; PSI-2, MCSG, MAD, structural G protein structure initiative, midwest center for structural genomics; 1.90A {Shewanella oneidensis} SCOP: a.25.6.1
Probab=33.51 E-value=29 Score=21.59 Aligned_cols=16 Identities=38% Similarity=0.599 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMER 49 (78)
Q Consensus 34 EEVEvLKe~I~eL~er 49 (78)
.|||.--++|+||++-
T Consensus 44 qeveiwtnrikeledw 59 (67)
T 2nr5_A 44 QEVEIWTNRIKELEDW 59 (67)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5999999999999874
No 208
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=32.80 E-value=35 Score=25.68 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE 54 (78)
+...++.|+++|..|+.++.++.
T Consensus 35 Lq~~le~l~~KIq~Le~~v~~~~ 57 (328)
T 1fzc_B 35 LRSILENLRSKIQKLESDVSAQM 57 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777777665543
No 209
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Probab=32.79 E-value=80 Score=24.71 Aligned_cols=37 Identities=11% Similarity=0.132 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
-|.+=|=+.+++|++++.|...+.+|.+....+..|+
T Consensus 162 NDv~~Ta~~L~~~~~l~~L~~~L~~L~~~L~~kA~e~ 198 (478)
T 3ocf_A 162 NDVYPTAVRLALLLSQNQVQTALHRLIAAFEAKGREF 198 (478)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3677777899999999999999999999998888775
No 210
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=32.58 E-value=60 Score=17.28 Aligned_cols=20 Identities=45% Similarity=0.494 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8522 39 LKEKIAELMERINQLEMENS 58 (78)
Q Consensus 39 LKe~I~eL~er~~~LE~EN~ 58 (78)
||.+-+.|...+..||+|-.
T Consensus 5 lkqknarlkqeiaaleyeia 24 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEIA 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 211
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=32.56 E-value=77 Score=25.13 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=22.1
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REE-VEVLKEKIAELMERINQLEMENSI 59 (78)
Q Consensus 33 REE-VEvLKe~I~eL~er~~~LE~EN~~ 59 (78)
.+| +..||++|++|+++..++|.+-.-
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~ 136 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDK 136 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566 888999999999999988887643
No 212
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=32.46 E-value=92 Score=22.00 Aligned_cols=31 Identities=13% Similarity=0.060 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
.+.++.+-+++.+|.++.++|+.|..-|+..
T Consensus 98 e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 98 EAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3557888899999999999999998888765
No 213
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=31.90 E-value=84 Score=19.83 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 37 EVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
+.|++++++|.+++.+|+.--..|.
T Consensus 82 ~~l~~~~~~l~~~i~~L~~~~~~L~ 106 (135)
T 1q06_A 82 RRTLEKVAEIERHIEELQSMRDQLL 106 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666655444443
No 214
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=31.61 E-value=70 Score=22.92 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSILKANATQET 68 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~ 68 (78)
+.|.++++|+.|.+.++.++.+-.-|+.....++
T Consensus 149 ~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~ 182 (250)
T 2ve7_C 149 QYKSSADKMQQLNAAHQEALMKLERLEKEVDEDT 182 (250)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHSCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4444555555555555555544444444444333
No 215
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=31.43 E-value=69 Score=21.50 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=27.6
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH--------hhCCHHHHhcCC
Q psy8522 31 AVREEVEVL-------KEKIAELMERINQLEMENSILK--------ANATQETLGQLP 73 (78)
Q Consensus 31 AVREEVEvL-------Ke~I~eL~er~~~LE~EN~~Lk--------~~aspE~l~q~~ 73 (78)
..|+++-.| ..++..|.+++.++..+-.+.+ ...+|||-++|.
T Consensus 71 ~~r~~l~~Li~ad~fDeaa~ral~~~~~~~~~e~~v~r~k~~~qiy~vLTPEQk~ql~ 128 (145)
T 3itf_A 71 SELETMHRLVTAENFDENAVRAQAEKMANEQIARQVEMAKVRNQMYRLLTPEQQAVLN 128 (145)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 455555544 4566777777777666655544 368999988763
No 216
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=31.41 E-value=1e+02 Score=19.70 Aligned_cols=20 Identities=30% Similarity=0.252 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy8522 43 IAELMERINQLEMENSILKA 62 (78)
Q Consensus 43 I~eL~er~~~LE~EN~~Lk~ 62 (78)
..+|-+++.+|+.|++.||.
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~ 67 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555553
No 217
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=31.36 E-value=1.3e+02 Score=22.70 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
+.+++..|++++..+..++.+|+..=.-|
T Consensus 24 ~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 24 HDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666555555555555443333
No 218
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1
Probab=31.19 E-value=89 Score=24.42 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVE-VLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEVE-vLKe~I~eL~er~~~LE~EN 57 (78)
-|.+=|=+.+++|++++ .|...+.+|.+....+-.|+
T Consensus 166 NDv~~Ta~~L~lr~~l~~~l~~~L~~L~~~L~~~A~e~ 203 (488)
T 1yfm_A 166 NDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEF 203 (488)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36666778999999998 99999999999998887775
No 219
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=30.95 E-value=1.1e+02 Score=21.22 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=17.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 20 IKDLVKSHLMF-AVREEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 20 AMDLVKsHLm~-AVREEVEvLKe~I~eL~er~~~LE 54 (78)
-++-||+.--| |...|++.++.+|..|++++..+.
T Consensus 82 ~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~ 117 (256)
T 3na7_A 82 KMSEIKSERELRSLNIEEDIAKERSNQANREIENLQ 117 (256)
T ss_dssp HHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443222 445566666665555555554443
No 220
>3gaa_A Uncharacterized protein TA1441; the protein with unknown function from thermoplasma acidophi structural genomics,PSI, MCSG; 2.70A {Thermoplasma acidophilum}
Probab=30.94 E-value=67 Score=22.54 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~E 56 (78)
..+|+-+..+++|++|.++..+.+.|
T Consensus 218 ~L~e~Ae~~e~~i~~l~e~~~~~~~~ 243 (252)
T 3gaa_A 218 LLEEQVKALDEQIKKIEEQYKELQEK 243 (252)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35788888889999999888886554
No 221
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=30.87 E-value=53 Score=22.30 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8522 37 EVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN 57 (78)
+.|++..+||-+++.+||.|-
T Consensus 61 ~~L~e~~keLh~~I~~LEeEK 81 (133)
T 1j1d_C 61 AELQDLARQLHARVDKVDEER 81 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666666666653
No 222
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=30.68 E-value=91 Score=18.81 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=23.0
Q ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q psy8522 27 HLMFAVREE-----VEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 27 HLm~AVREE-----VEvLKe~I~eL~er~~~LE~ 55 (78)
.|+-|++.| -+.++.+|.|-.+|..+|..
T Consensus 48 ~l~~alk~e~d~~~k~~ir~K~~eY~~RAE~LK~ 81 (83)
T 2w2u_A 48 VLAQLVSLYRDGSTAAIYEQMINEYKRRIEVLKE 81 (83)
T ss_dssp HHHHHHHHSTTSSTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777765 35789999999999988864
No 223
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=30.35 E-value=54 Score=25.09 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERI 50 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~ 50 (78)
+++..+.|+++|+++.+.+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~ 33 (412)
T 3u06_A 15 LRQRTEELLRCNEQQAAEL 33 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333
No 224
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=30.25 E-value=1.1e+02 Score=20.78 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
++|...+-.|+++|..++-.||.|-.-||.+
T Consensus 75 hkEMKq~aaqsaaLlsk~yh~ene~ar~kkl 105 (114)
T 2xzr_A 75 HKEMKQIEDKIEEILSKIYHIENEIARIKKL 105 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4677777788889999998898888877765
No 225
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=30.23 E-value=66 Score=25.14 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 30 FAVREEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~~LE~E 56 (78)
-||-+|.+.|+..+++++++-+..|..
T Consensus 6 ~~~~~e~~~~~~~~~~vq~kA~~~E~~ 32 (333)
T 4etp_B 6 AALEKEIAALEKEIAALEKEISKQEKF 32 (333)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999998887764
No 226
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=29.96 E-value=1.6e+02 Score=21.45 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 22 DLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 22 DLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
+.+|.|+.|-. ..+|++...|..++.+...|++-+++..
T Consensus 163 e~Ik~yLa~R~----~~lK~kl~~l~~~L~~~~~e~~s~~~~~ 201 (228)
T 3q0x_A 163 SVVKQFLAFRL----SEVKGTCHDLSDDLSRTRDDRDSMVAQL 201 (228)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888765 4688888888888888888888776653
No 227
>2p0s_A ABC transporter, permease protein, putative; APC90123.1, putative ABC transporter, porphyromonas gingiVal structural genomics, PSI-2; 1.60A {Porphyromonas gingivalis} SCOP: c.94.1.3
Probab=29.45 E-value=70 Score=19.81 Aligned_cols=33 Identities=9% Similarity=0.072 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCC--HHHHhcCCCCC
Q psy8522 44 AELMERINQLEMENSILKANAT--QETLGQLPHPN 76 (78)
Q Consensus 44 ~eL~er~~~LE~EN~~Lk~~as--pE~l~q~~~~~ 76 (78)
..|+..++++.....+-....+ +++++.+..|-
T Consensus 84 ~~l~~~L~~~~~~~~l~~~gl~~~~~~l~~l~~~v 118 (143)
T 2p0s_A 84 NHISRILSDYLSDKKIASYNIPDIKQILADSKIEL 118 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCTTHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCchHHHHHHhhCCC
Confidence 4567777777777777777899 99999887764
No 228
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=29.43 E-value=35 Score=18.30 Aligned_cols=24 Identities=29% Similarity=0.686 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE 54 (78)
|+..|.-..|.+|.-|-++..+.+
T Consensus 3 ~IkkELtQIK~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 3 AIKKELTQIKQKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 566788888999999888876654
No 229
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=29.14 E-value=96 Score=18.63 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
.+.|++++.+|.+++.+|+.--..|..
T Consensus 76 ~~~l~~~~~~l~~~i~~l~~~~~~l~~ 102 (108)
T 2vz4_A 76 RAHLRRQHELLSARIGKLQKMAAAVEQ 102 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777665555543
No 230
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=28.89 E-value=1.3e+02 Score=21.25 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERI 50 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~ 50 (78)
.+|++.|...+.+|..++
T Consensus 145 ~~e~~~l~~~~~~l~~ql 162 (213)
T 1ik9_A 145 QKENERLLRDWNDVQGRF 162 (213)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 231
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=28.88 E-value=32 Score=19.73 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 42 KIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 42 ~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
.+.|.+|++..+|.+.+-||.-.
T Consensus 7 ELeEa~Erae~ae~~vnkLR~k~ 29 (45)
T 3zwh_Q 7 ELEDATETADAMNREVSSLKNKL 29 (45)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788889999999999998643
No 232
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=28.82 E-value=28 Score=19.11 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8522 42 KIAELMERINQLEMEN 57 (78)
Q Consensus 42 ~I~eL~er~~~LE~EN 57 (78)
||+-|+.++..||+-+
T Consensus 1 qiaaleqkiaaleqkc 16 (32)
T 4g1a_A 1 QIAALEQKIAALEQKC 16 (32)
T ss_dssp -CHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHH
Confidence 4566677777776654
No 233
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=28.64 E-value=72 Score=16.96 Aligned_cols=19 Identities=42% Similarity=0.625 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8522 35 EVEVLKEKIAELMERINQL 53 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~L 53 (78)
|-+.|..+|+-|..++..|
T Consensus 8 endaleqkiaalkqkiasl 26 (28)
T 3ra3_A 8 ENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHh
Confidence 4555666666666665544
No 234
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=28.51 E-value=97 Score=19.77 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHh
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKANATQETLG 70 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~ 70 (78)
++.++|.+|.+..+-...-..+|.+-..||.-+....+.
T Consensus 46 ~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~ 84 (119)
T 3ol1_A 46 LAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLA 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHH
Confidence 467777777777766666666676667777665555444
No 235
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=28.35 E-value=95 Score=18.29 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 35 EVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN 57 (78)
..+.+.+.|+.|+.+...++.+=
T Consensus 73 ~~e~i~~~i~~le~~~~~~~~~l 95 (107)
T 1fxk_A 73 KLETLQLREKTIERQEERVMKKL 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 236
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=28.18 E-value=1e+02 Score=20.71 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
--|..|...|..|-..|..|-+||..-++-
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 357788899999999999999999988764
No 237
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=27.95 E-value=1.3e+02 Score=19.78 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 30 FAVREEVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
=....|+..|+..=..|..+++.||+.|-=|-
T Consensus 38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLE 69 (111)
T 2v66_B 38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 69 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 34677888888888888888888888887664
No 238
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=27.90 E-value=80 Score=17.30 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
||..||.++.-|..||-.-.+.-..||--
T Consensus 2 evqalkkrvqalkarnyaakqkvqalrhk 30 (33)
T 1fmh_B 2 EVQALKKRVQALKARNYAAKQKVQALRHK 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 67788888888888877766666666543
No 239
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=27.84 E-value=77 Score=23.43 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8522 35 EVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~ 55 (78)
-||.+.|+|.+|++++.++.+
T Consensus 7 Rvd~~EErIs~le~rleei~q 27 (233)
T 2yko_A 7 RCDQLEERVSAAEDEINEIKR 27 (233)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367777888888887766654
No 240
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=27.83 E-value=1.1e+02 Score=19.01 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
+|+..|+..=++|...+..||.|..
T Consensus 11 ~eL~~l~~eE~~L~~eL~~lEke~~ 35 (96)
T 3q8t_A 11 RELKELALEEERLIQELEDVEKNRK 35 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3333333333344444444444433
No 241
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=27.78 E-value=87 Score=20.58 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
+=+.+|..|+.+|++|...+...-.+-.
T Consensus 49 ~R~~~V~~lq~Ki~elkr~lAd~v~~~k 76 (96)
T 2ic9_A 49 SRRAAVSALETKLGELKRELADLIAAQK 76 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4567899999999999999887766444
No 242
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=27.73 E-value=2e+02 Score=21.71 Aligned_cols=30 Identities=10% Similarity=0.132 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 28 LMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 28 Lm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
-....++.++.++.+|.+|..++.+|+..+
T Consensus 27 ~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 27 QIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888899999999999999988654
No 243
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=27.63 E-value=0.079 Score=31.88 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 42 KIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 42 ~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
+|++|..+|.+|+.||.+||...
T Consensus 72 e~~~L~~e~~~L~~e~~iLKka~ 94 (108)
T 2rn7_A 72 RLKEPERENRELRRSNDILRLAS 94 (108)
T ss_dssp CCCCCCSCCCCCSCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777777653
No 244
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=27.46 E-value=1.7e+02 Score=20.80 Aligned_cols=42 Identities=12% Similarity=0.280 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
-++++.=+.||.| .|..|..+|..|++++.....+|..+..-
T Consensus 123 aE~ireli~~Aer-tV~kLqkeiD~LEDeL~~eKek~k~i~~e 164 (175)
T 3mud_A 123 AEVIRELICYCLD-TTAKNEKSIDDLEEKVAHAKEENLNMHQM 164 (175)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666778876 47788888888888888887777766543
No 245
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=27.20 E-value=57 Score=21.39 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHh
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKANATQETLG 70 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~ 70 (78)
.+.||.++++++.+..+ +++++.+++.+.
T Consensus 17 L~~l~~ql~~l~~~l~~------l~~~LP~~~em~ 45 (147)
T 2rjz_A 17 LEAYKAQMKEMEESFGA------LLRQLPSDTEVP 45 (147)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHTTTGGGHHH
T ss_pred HHHHHHHHHHHHHHHHH------HHHhCCChhHHH
Confidence 45566666666666544 345555555443
No 246
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=26.81 E-value=1.1e+02 Score=18.38 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
.+.|++++..|.+++.+|+.--..|.
T Consensus 77 ~~~l~~~~~~l~~~i~~l~~~~~~l~ 102 (109)
T 1r8d_A 77 KAALQSQKEILMKKKQRMDEMIQTID 102 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777765544443
No 247
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=26.79 E-value=1.3e+02 Score=19.22 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
.|+..|..++..|...++++..|-..+|+-
T Consensus 55 ~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 55 NEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777653
No 248
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=26.78 E-value=91 Score=20.16 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8522 38 VLKEKIAELMERINQLEM 55 (78)
Q Consensus 38 vLKe~I~eL~er~~~LE~ 55 (78)
.+..+|++|.++...||.
T Consensus 142 ~l~~~i~~L~~~l~~le~ 159 (166)
T 3pjs_K 142 AYTRTTRALHERFDRLER 159 (166)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 249
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=26.72 E-value=76 Score=22.73 Aligned_cols=32 Identities=13% Similarity=0.069 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
..+++.+-++..++.+++.+|+.||+-+++..
T Consensus 140 ~~~~~e~~~~~e~~~~~i~ql~~En~~le~~I 171 (250)
T 2ve7_C 140 RETYMEFLWQYKSSADKMQQLNAAHQEALMKL 171 (250)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888899999999999998887654
No 250
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=26.62 E-value=1.5e+02 Score=19.87 Aligned_cols=31 Identities=26% Similarity=0.304 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Q psy8522 32 VREEVEVLKEKIAELME---RINQLEMENSILKA 62 (78)
Q Consensus 32 VREEVEvLKe~I~eL~e---r~~~LE~EN~~Lk~ 62 (78)
-..+++.||+.|+.+.+ ++.-|++...++|.
T Consensus 43 Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~ 76 (110)
T 2v4h_A 43 KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKA 76 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667766666555 66666666666654
No 251
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=26.61 E-value=94 Score=23.44 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
..++.++.++++|.+|..++.+|+.-+
T Consensus 22 ~L~~~l~~~~~ki~~L~~~i~~l~~~~ 48 (319)
T 1fzc_C 22 YLQEIYNSNNQKIVNLKEKVAQLEAQC 48 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446777888899999999888887643
No 252
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=26.58 E-value=76 Score=18.20 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy8522 23 LVKSHLMFAVREEV-EVLKEKIAELMERINQLE 54 (78)
Q Consensus 23 LVKsHLm~AVREEV-EvLKe~I~eL~er~~~LE 54 (78)
=+|.=+.-|-|.=| ++|...|++++.+++.++
T Consensus 15 El~~Ll~~AkR~rVk~~L~~ei~~lE~ei~~~~ 47 (50)
T 2a26_A 15 EVKVLLEKATRKRVRDALTAEKSKIETEIKNKM 47 (50)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence 46677777777766 678899999998888664
No 253
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=26.29 E-value=73 Score=21.57 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
+=+.+|..|+.+|++|...+...-.
T Consensus 66 ~R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 66 DREGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467899999999999888776543
No 254
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=26.00 E-value=77 Score=23.45 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
..+|+..||+...+|.+-..++++=-++|..+
T Consensus 127 l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l 158 (209)
T 2wvr_A 127 KDNEIARLKKENKELAEVAEHVQYMAELIERL 158 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556655555555555555555555544
No 255
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=25.91 E-value=1.2e+02 Score=18.46 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
|.+.+-....-.+|++--..|+.|-.-+|.+..-|
T Consensus 25 r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLEGE 59 (74)
T 2xv5_A 25 RARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGE 59 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444333344556666667888888887765433
No 256
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=25.67 E-value=1.5e+02 Score=21.13 Aligned_cols=34 Identities=41% Similarity=0.423 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 30 FAVREEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
=+.|.|.|-=|=+.+|-|+-...|..||.-++..
T Consensus 122 G~LrKELEdEklK~~E~MdSFE~LkvENE~vker 155 (167)
T 4gkw_A 122 GILRKELENEKLKAAENMDSFEKLSMENENLKEK 155 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHH
Confidence 4678999988888999999999999999988864
No 257
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=25.55 E-value=4 Score=27.06 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
+.+.|...+..|..++.+|..||..|+.
T Consensus 59 ~~~~LE~e~~~L~~e~e~L~~En~~l~~ 86 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVEKLASENASMKL 86 (107)
T ss_dssp HHHHHHHHHTTTSSTTTTTTSTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555566666666666654
No 258
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=25.53 E-value=85 Score=19.38 Aligned_cols=17 Identities=18% Similarity=0.433 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8522 37 EVLKEKIAELMERINQL 53 (78)
Q Consensus 37 EvLKe~I~eL~er~~~L 53 (78)
..|+++|..|+.++..-
T Consensus 17 ~~Le~~v~~le~~Le~s 33 (72)
T 3cve_A 17 KDLEGQLSEMEQRLEKS 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 259
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=25.16 E-value=84 Score=16.58 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERI 50 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~ 50 (78)
.|.|.|.|++..|..+.
T Consensus 8 keledlqerlrklrkkl 24 (27)
T 3twe_A 8 KELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 35566666665555443
No 260
>1lj2_A NSP3-C, nonstructural RNA-binding protein 34, NS34, NCVP4; NSP3, homodimer, translation, mRNA, closed loop, coiled coil; 2.38A {Simian rotavirus A} SCOP: h.1.13.2
Probab=25.10 E-value=58 Score=22.09 Aligned_cols=17 Identities=41% Similarity=0.442 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8522 40 KEKIAELMERINQLEME 56 (78)
Q Consensus 40 Ke~I~eL~er~~~LE~E 56 (78)
...|.+|+++++++|.|
T Consensus 12 Q~~In~lq~~~~klE~d 28 (110)
T 1lj2_A 12 QAHIAELQVYNNKLERD 28 (110)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35699999999999987
No 261
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=25.09 E-value=84 Score=16.57 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8522 30 FAVREEVEVLKEKIAELMERIN 51 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~ 51 (78)
|-...||-.||-.+.-|.+.+.
T Consensus 3 yqlkdevgelkgevralkdevk 24 (27)
T 3v86_A 3 YQLKDEVGELKGEVRALKDEVK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHhHHHHHHHHHh
Confidence 3444555555555555544443
No 262
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=24.67 E-value=1.4e+02 Score=19.09 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
|..+.|+.+|..|...+..|+..=.-++..
T Consensus 98 eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~ 127 (151)
T 2zdi_C 98 EAISFLEKRLKEYDEAIKKTQGALAELEKR 127 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666665555554443
No 263
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=24.60 E-value=84 Score=19.16 Aligned_cols=19 Identities=11% Similarity=0.191 Sum_probs=10.2
Q ss_pred CccccccchHHHHHHHHHH
Q psy8522 3 GNVRHNGLILGVIFAYHIK 21 (78)
Q Consensus 3 ~~~~~~~~~~~~~~ieQAM 21 (78)
|+..|.+-+-++.+|++-|
T Consensus 57 ggrdHsTV~ha~~ki~~~~ 75 (94)
T 1j1v_A 57 GGRDHTTVLHACRKIEQLR 75 (94)
T ss_dssp TSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 4445555555555655533
No 264
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=24.35 E-value=1.2e+02 Score=19.65 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN 57 (78)
+..+.|++.++++..++.+|+...
T Consensus 168 ~~~~~l~~~~~~~~~~~~~l~~~~ 191 (203)
T 3qks_A 168 TAYKKLSELKKTINNRIKEYRDIL 191 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777777544
No 265
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=23.89 E-value=1.5e+02 Score=18.95 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
+.-+|.|+ -+|++.-+++|.+|++.+.+...
T Consensus 42 L~~LKkkl----~~el~~h~~ei~~le~~i~rhk~ 72 (84)
T 1gmj_A 42 LAALKKHK----ENEISHHAKEIERLQKEIERHKQ 72 (84)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666 57777778888888777766544
No 266
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=23.65 E-value=1.2e+02 Score=22.68 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
+..|+.++.+|..|+.+||..-.-++..+
T Consensus 32 I~~Lq~~le~l~~KIq~Le~~v~~~~~~~ 60 (328)
T 1fzc_B 32 LRVLRSILENLRSKIQKLESDVSAQMEYC 60 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67799999999999999998876666554
No 267
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=23.61 E-value=1.5e+02 Score=20.83 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKI 43 (78)
Q Consensus 31 AVREEVEvLKe~I 43 (78)
+..+|++-+|++.
T Consensus 101 ~L~~El~~~k~~~ 113 (168)
T 3o0z_A 101 SLQEEVKHLKHNL 113 (168)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 268
>1htn_A Tetranectin; plasminogen binding, kringle 4, alpha-helical coiled coil, C-type lectin, carbohydrate recognition domain; 2.80A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Probab=23.50 E-value=47 Score=21.05 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~ 55 (78)
..++.|+.+|..|..++..|..
T Consensus 22 ~~~~~L~~~~~~l~~~l~~l~~ 43 (182)
T 1htn_A 22 KMFEELKSRLDTLSQEVALLKE 43 (182)
T ss_dssp -----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667777777776666654
No 269
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=23.33 E-value=1.5e+02 Score=18.94 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 37 EVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~~L 60 (78)
+.|++++.+|.+++.+|+.--..|
T Consensus 98 ~~l~~~~~~l~~~i~~L~~~~~~L 121 (148)
T 3gpv_A 98 KLMKQQEANVLQLIQDTEKNLKKI 121 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444433
No 270
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Probab=23.28 E-value=1.5e+02 Score=23.30 Aligned_cols=37 Identities=14% Similarity=0.173 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEV-EVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEV-EvLKe~I~eL~er~~~LE~EN 57 (78)
-|.|=|=+.+++|+++ +.|...+.+|.+....+-.|+
T Consensus 162 NDv~~Ta~~L~lr~~l~~~l~~~L~~L~~~L~~kA~e~ 199 (495)
T 4adm_A 162 NDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDW 199 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4777788899999998 579999999999998887775
No 271
>1bb1_A Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1 PDB: 1bb1_C 1u0i_B
Probab=23.26 E-value=1.1e+02 Score=17.08 Aligned_cols=20 Identities=45% Similarity=0.735 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERI 50 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~ 50 (78)
|+.||+-..|.+|+-..+-+
T Consensus 13 aikeeiaaikdkiaaikeyi 32 (36)
T 1bb1_A 13 AIKEEIAAIKDKIAAIKEYI 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57788888888887766544
No 272
>2gr7_A Adhesin; trimeric autotransporter, adhesion, membrane protein, protei secretion, microbial pathogenesis; HET: C8E; 2.30A {Haemophilus influenzae} SCOP: d.24.1.4
Probab=23.23 E-value=94 Score=20.53 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 22 DLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 22 DLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
|.|----.++|-..|.-+..+|..|..++.+++.|-
T Consensus 20 dAVNg~QL~~v~~~v~~~~~~in~L~~~I~~~~k~a 55 (129)
T 2gr7_A 20 RGSNGSQLYAVAKGVTNLAGQVNNLEGKVNKVGKRA 55 (129)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333445666667778889999999999888763
No 273
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=23.22 E-value=32 Score=19.75 Aligned_cols=19 Identities=32% Similarity=0.247 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8522 39 LKEKIAELMERINQLEMEN 57 (78)
Q Consensus 39 LKe~I~eL~er~~~LE~EN 57 (78)
+...|..|...+..|+.||
T Consensus 62 il~~I~~L~~~~~~l~~e~ 80 (80)
T 3bs5_B 62 ILEAVDLLCALNYGLETEN 80 (80)
T ss_dssp HHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHhhhccccCC
Confidence 3456777888888888887
No 274
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.09 E-value=1.5e+02 Score=18.77 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN 57 (78)
++|+-.|+-+|..|.-.+..+..-|
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~ 59 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQC 59 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4444444444444444444433333
No 275
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}
Probab=22.96 E-value=2e+02 Score=21.95 Aligned_cols=32 Identities=16% Similarity=0.465 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 26 SHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 26 sHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
+=.++.+|++++.|...+.+|.+....+-.|+
T Consensus 114 ta~~L~lr~~l~~l~~~L~~L~~~L~~~A~~~ 145 (478)
T 1yis_A 114 NADLIAYRDSIDHILKRFATVIDRLAAFSLKN 145 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33447899999999999999999998887775
No 276
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=22.85 E-value=58 Score=20.31 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN 57 (78)
++++.||.+|+.|..+-.+...+=
T Consensus 3 edi~eLkkevkKL~~~A~q~kmdL 26 (71)
T 2js5_A 3 EGAEELKAKLKKLNAQATALKMDL 26 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhH
Confidence 578889999999988887766543
No 277
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1
Probab=22.80 E-value=33 Score=21.97 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMER 49 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er 49 (78)
+.+.|++.|+++|++++.+
T Consensus 194 ~~~~el~~l~~~l~~~~~~ 212 (213)
T 1gxl_A 194 ERRIKLKHLEQEMEETERQ 212 (213)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 4467777777777776654
No 278
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=22.69 E-value=1.5e+02 Score=19.18 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 37 EVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
++|.+++++|.+++.+|+.--..|....
T Consensus 93 ~ll~~~~~~l~~qi~~L~~~~~~L~~~~ 120 (154)
T 2zhg_A 93 QLSSQWREELDRRIHTLVALRDELDGCI 120 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666555555443
No 279
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=22.29 E-value=1e+02 Score=19.34 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~ 55 (78)
++.|..+|.+|..++.+|+.
T Consensus 33 l~~L~~~l~~Lq~~l~~l~~ 52 (177)
T 1pwb_A 33 VEALQGQVQHLQAAFSQYKK 52 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 44555666666666665553
No 280
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=22.17 E-value=2e+02 Score=20.44 Aligned_cols=30 Identities=23% Similarity=0.206 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
+||=...--.+++.|+..|..||.|+...|
T Consensus 126 ireli~~AertV~kLqkeiD~LEDeL~~eK 155 (175)
T 3mud_A 126 IRELICYCLDTTAKNEKSIDDLEEKVAHAK 155 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555666666666666655444
No 281
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=22.17 E-value=19 Score=24.64 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8522 35 EVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE 54 (78)
|.+.+.+++++|.+++++|+
T Consensus 257 ~~~~~~~~~~~l~~~~~~l~ 276 (285)
T 3rvy_A 257 HEDNINNEIIKLREEIVELK 276 (285)
T ss_dssp --------------------
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 282
>1f1m_A OSPC, outer surface protein C; LYME disease, HB19, helical bundle, dimer, immune system; 1.80A {Borrelia burgdorferi} SCOP: a.24.12.1 PDB: 1ggq_A
Probab=21.77 E-value=1.6e+02 Score=21.06 Aligned_cols=34 Identities=38% Similarity=0.389 Sum_probs=23.4
Q ss_pred cchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 9 GLILGVI--FAYHIKDLVKSHLMFAVREEVEVLKEKIAELME 48 (78)
Q Consensus 9 ~~~~~~~--~ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~e 48 (78)
||.+-.| +|-.+-..| .||.| ||.|=.-|.||..
T Consensus 2 gpnL~~ISKKItdsnafv-----~aVKE-VetLv~SIDELAK 37 (164)
T 1f1m_A 2 GPNLTEISKKITESNAVV-----LAVKE-VETLLTSIDELAK 37 (164)
T ss_dssp -CCHHHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHT
T ss_pred CCcHHHHHHHhccHHHHH-----HHHHH-HHHHHhhHHHHHH
Confidence 4445544 577666554 38887 9999888999873
No 283
>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=21.74 E-value=70 Score=19.39 Aligned_cols=21 Identities=24% Similarity=0.143 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCC
Q psy8522 44 AELMERINQLEMENSILKANAT 65 (78)
Q Consensus 44 ~eL~er~~~LE~EN~~Lk~~as 65 (78)
+||++|+.- .+||.-|+++..
T Consensus 14 ~ELe~k~rl-L~eN~~L~qLyk 34 (61)
T 2dii_A 14 KELEEKNRM-LQEDPVLFQLYK 34 (61)
T ss_dssp HHHHHHHHH-HHHCHHHHHHHH
T ss_pred HhHHHHHHH-HHhCHHHHHHHH
Confidence 567777654 467777776543
No 284
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=21.67 E-value=1.9e+02 Score=20.21 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
.+...|+..+..|+.....|+.+...|+.
T Consensus 56 ~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 56 IDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666665555
No 285
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=21.22 E-value=1.5e+02 Score=18.14 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE 54 (78)
+.+-|-|..-++...++.++.+++
T Consensus 13 ~lk~e~e~a~d~ae~~e~~~k~~e 36 (101)
T 3u59_A 13 MLKLDKENAIDRAEQAEADKKQAE 36 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 286
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti}
Probab=21.11 E-value=1.9e+02 Score=22.56 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy8522 22 DLVKSHLMFAVREEV-EVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 22 DLVKsHLm~AVREEV-EvLKe~I~eL~er~~~LE~EN 57 (78)
|.+=|=+..++++++ +.|...+..|.+....+-.|.
T Consensus 174 Dv~~TA~~l~~~~~~~~~L~~~L~~L~~~L~~kA~~~ 210 (495)
T 4hgv_A 174 DTYPTAMHIACAERVIHDLLPALKHLHKALEEKVKAF 210 (495)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677777788888887 678899999998888887765
No 287
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=21.11 E-value=1.3e+02 Score=17.45 Aligned_cols=28 Identities=11% Similarity=0.366 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 26 SHLMFAVREEVEVLKEKIAELMERINQL 53 (78)
Q Consensus 26 sHLm~AVREEVEvLKe~I~eL~er~~~L 53 (78)
.|+..|...|+|.=-++|..+.++...+
T Consensus 23 k~ma~~mg~Eid~QN~~ldrI~~k~d~~ 50 (64)
T 3b5n_D 23 KKMALTTGKELDSQQKRLNNIEESTDDL 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999998887654
No 288
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=21.10 E-value=1.7e+02 Score=18.64 Aligned_cols=27 Identities=37% Similarity=0.597 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q psy8522 35 EVEVLKEKIAELMERIN-------QLEMENSILK 61 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~-------~LE~EN~~Lk 61 (78)
||+.|++++.+|..+.. .|-.+|.-|.
T Consensus 19 e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq 52 (125)
T 1joc_A 19 EIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQ 52 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 56666666666655543 3444555544
No 289
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=20.97 E-value=89 Score=20.51 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAEL 46 (78)
Q Consensus 31 AVREEVEvLKe~I~eL 46 (78)
+++.|.+.|+++|.+.
T Consensus 6 ~l~~~~~~l~~~~~~~ 21 (340)
T 1got_B 6 QLRQEAEQLKNQIRDA 21 (340)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555443
No 290
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.94 E-value=1.5e+02 Score=17.97 Aligned_cols=46 Identities=13% Similarity=-0.024 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 18 YHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 18 eQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
++-++-+-+.++|.= .-+|.|-..+.+....+..|+.+...|+.-.
T Consensus 13 e~Ri~~LE~klAfqE-~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 13 EARLVELETRLSFQE-QALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555542 3466777777777777777777777765543
No 291
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=20.90 E-value=1.3e+02 Score=19.54 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=14.7
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy8522 26 SHLMFAVR---EEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 26 sHLm~AVR---EEVEvLKe~I~eL~er~~~LE 54 (78)
.||...++ .=+-..+.+|.+|++++..+|
T Consensus 6 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (192)
T 1ca9_A 6 EALSSKVQQLERSIGLKDLAMADLEQKVLEME 37 (192)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45544442 223334555666666666655
No 292
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Probab=20.70 E-value=2.3e+02 Score=21.99 Aligned_cols=32 Identities=19% Similarity=0.424 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 26 SHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 26 sHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
+=.++.+|+.++.|...+.+|.+....+-.|+
T Consensus 140 ta~~L~lr~al~~l~~~L~~L~~~L~~~A~~~ 171 (503)
T 2j91_A 140 NTDLIILRNALDLLLPKLARVISRLADFAKER 171 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33447899999999999999999998887775
No 293
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=20.59 E-value=1.6e+02 Score=18.28 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQ 52 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~ 52 (78)
+..|+.+|.+|..++.+
T Consensus 18 ~~~l~~~~~~l~~~l~~ 34 (182)
T 3kqg_A 18 ASALNTKIRALQGSLEN 34 (182)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 294
>3fga_D Shugoshin-like 1; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens}
Probab=20.40 E-value=1.4e+02 Score=17.48 Aligned_cols=32 Identities=34% Similarity=0.300 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 28 LMFAVREEVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 28 Lm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
-|+|+-=|.| |++.++-.+-+-+|..|+..|.
T Consensus 13 r~LalALe~E--k~Kvr~Aq~~ILqLkrE~q~L~ 44 (47)
T 3fga_D 13 KMLVLALENE--KSKVKEAQDIILQLRKECYYLT 44 (47)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455544444 7778899999999999999886
No 295
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=20.34 E-value=1.2e+02 Score=19.89 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8522 35 EVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~ 55 (78)
.+..++.+|.+|+.++..+|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 15 MLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 455667777777777777774
No 296
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=20.30 E-value=1e+02 Score=21.94 Aligned_cols=20 Identities=20% Similarity=0.414 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8522 37 EVLKEKIAELMERINQLEME 56 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~E 56 (78)
+.|++..++|-+++.+||.|
T Consensus 61 ~~L~e~ckELh~~I~~LEeE 80 (180)
T 1j1e_C 61 AELQDLARQLHARVDKVDEE 80 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544
No 297
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=20.13 E-value=1.8e+02 Score=18.54 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhhCCHHHHhcCC
Q psy8522 49 RINQLEMENSILKANATQETLGQLP 73 (78)
Q Consensus 49 r~~~LE~EN~~Lk~~aspE~l~q~~ 73 (78)
.+..++..|.++ ++.+|||-++|.
T Consensus 77 ~v~~~r~~~qmy-~lLTPEQk~q~~ 100 (108)
T 3o39_A 77 MLAHMETQNKIY-NILTPEQKKQFN 100 (108)
T ss_dssp HHHHHHHHHHHH-TTSCHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhCCHHHHHHHH
Confidence 345566666665 578999988764
Done!