RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8522
(78 letters)
>d2jova1 d.349.1.1 (A:1-77) Hypothetical protein CPE0013
{Clostridium perfringens [TaxId: 1502]}
Length = 77
Score = 25.7 bits (57), Expect = 0.25
Identities = 4/28 (14%), Positives = 11/28 (39%)
Query: 29 MFAVREEVEVLKEKIAELMERINQLEME 56
+ V+ V K + +++L +
Sbjct: 20 VVPVKSNKPVEISKWIDFSNVLSRLYVG 47
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 89
Score = 24.9 bits (54), Expect = 0.70
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 40 KEKIAELMERINQLEMENSILKANA 64
E+I QL+ EN++ +A
Sbjct: 58 PSAAVSEAEQIRQLKKENALQRART 82
>d1ydla1 d.295.1.1 (A:6-71) General transcription factor IIH
polypeptide 5, TFB5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 66
Score = 23.8 bits (52), Expect = 1.2
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 20 IKDLVKSHLMFAVREE-VEVLKEKIAELMERIN 51
I+D+ +H+ V E V VL+E++ ELM++
Sbjct: 30 IQDIDDTHVF--VIAELVNVLQERVGELMDQNA 60
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 24.8 bits (53), Expect = 1.4
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 20 IKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEME 56
+ ++ + A+RE +E + E + +E+E
Sbjct: 217 LTEICQRACKLAIRESIESEIRRERERQTNPSAMEVE 253
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1,
C-terminal dimerization domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 59
Score = 23.6 bits (51), Expect = 1.5
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 34 EEVEVLKEKIAELMERINQLEME 56
+E L +++ L + LE E
Sbjct: 1 DEAAELMQQVNVLKLTVEDLEKE 23
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia
coli [TaxId: 562]}
Length = 94
Score = 23.7 bits (51), Expect = 1.8
Identities = 6/37 (16%), Positives = 17/37 (45%)
Query: 18 YHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLE 54
+ + +E +++E++ E+ RI +L+
Sbjct: 23 RELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQ 59
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 23.7 bits (51), Expect = 2.3
Identities = 8/43 (18%), Positives = 23/43 (53%)
Query: 25 KSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQE 67
+ M E+VE ++ I ++ E + +++ ++S + A+ +
Sbjct: 1 RDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPD 43
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 23.9 bits (51), Expect = 2.4
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 13/63 (20%)
Query: 3 GNVRHNGLILGVIF----AYHIKDLVKSHLMFAVREEVEVL---------KEKIAELMER 49
VR GL++G+ A +I L K H + A++ V+ KE + ++E
Sbjct: 322 REVRGMGLMVGLELKEKAAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEA 381
Query: 50 INQ 52
+
Sbjct: 382 VRA 384
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus
subtilis [TaxId: 1423]}
Length = 109
Score = 23.4 bits (50), Expect = 2.5
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 19 HIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLE 54
+ D A++ + E+L +K + E I ++
Sbjct: 67 EMLDHPNFDRKAALQSQKEILMKKKQRMDEMIQTID 102
>d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain
(RecC), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 470
Score = 23.8 bits (50), Expect = 2.7
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 33 REEVEVLKEKIAELMER 49
+ EVEVL +++ ++E
Sbjct: 36 QREVEVLHDRLLAMLEE 52
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 24.0 bits (51), Expect = 2.7
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 33 REEVEVLKEKIAELMERINQLE 54
+E + L ++ E + L
Sbjct: 708 KERYQKLLKQKQEKETELENLL 729
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 23.3 bits (50), Expect = 2.7
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 33 REEVEVLKEKIAELMERINQLE 54
E ++L+++ +L ++ QL
Sbjct: 65 ISEEDLLRKRREQLKHKLEQLG 86
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 93
Score = 23.3 bits (50), Expect = 3.2
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 37 EVLKEKIAELMERINQLE 54
VL+ KI+ M+R ++
Sbjct: 59 CVLRTKISGYMDRAENIK 76
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 22.9 bits (49), Expect = 3.2
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 25 KSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKA 62
L+ + ++ L++ + + +I+QL+ E LK
Sbjct: 38 TLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKR 75
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 23.4 bits (50), Expect = 3.4
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 33 REEVEVLKEKIAELMERINQLE 54
E E L ++ EL+++I +L
Sbjct: 439 GLEHEKLLDEYKELLDQIAELL 460
>d1twfc1 d.74.3.1 (C:3-41,C:173-268) RPB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 135
Score = 23.2 bits (50), Expect = 3.6
Identities = 5/25 (20%), Positives = 16/25 (64%)
Query: 32 VREEVEVLKEKIAELMERINQLEME 56
V ++ L++K+A ++ + Q++ +
Sbjct: 111 VVRGIDTLQKKVASILLALTQMDQD 135
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid
herpesvirus 4 [TaxId: 33708]}
Length = 96
Score = 22.9 bits (49), Expect = 3.7
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 43 IAELMERINQLEMENSILK 61
E+++ + +L++EN LK
Sbjct: 4 YEEMVKEVERLKLENKTLK 22
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia
coli [TaxId: 562]}
Length = 127
Score = 23.1 bits (49), Expect = 3.7
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 29 MFAVREEVEVLKEKIAELMERINQLEMENSILKANATQ 66
+ EK+AE+ I +L+ L A A
Sbjct: 74 QRHSADVKRRTLEKVAEIERHIEELQSMRDQLLALANA 111
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 22.9 bits (49), Expect = 4.4
Identities = 6/36 (16%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 19 HIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLE 54
+I+ + +++++ LK + A L +++ L
Sbjct: 48 YIQYM--RRKNHTHQQDIDDLKRQNALLEQQVRALG 81
>d1qk1a2 d.128.1.2 (A:103-379) Creatine kinase, C-terminal domain
{Human (Homo sapiens), mitochondria [TaxId: 9606]}
Length = 277
Score = 22.9 bits (49), Expect = 5.1
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 34 EEVEVLKEKIAELMERINQLEMENSILKANATQET 68
E V+++ + + L++ +LE I T
Sbjct: 241 ELVQLVIDGVNYLIDCERRLERGQDIRIPTPVIHT 275
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B,
SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 22.1 bits (47), Expect = 7.6
Identities = 4/18 (22%), Positives = 11/18 (61%)
Query: 37 EVLKEKIAELMERINQLE 54
+ ++ K E ++R +L+
Sbjct: 56 QSIRAKCTEYLDRAEKLK 73
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase
{Garden sage (Salvia officinalis) [TaxId: 38868]}
Length = 207
Score = 22.5 bits (48), Expect = 8.6
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 18 YHIKDLVKSHLMFAVREEVEVLKEKIAEL----MERINQLEMENSI 59
+I+ L + + L ++ L ME + QLE+ + +
Sbjct: 5 NYIQSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLELIHDL 50
>d1j5ya2 d.94.2.1 (A:68-174) Putative transcriptional regulator
TM1602, C-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 107
Score = 21.9 bits (47), Expect = 9.9
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 5 VRHNGLILGVIFAYHIKDLVKSHLMFAVREEVEVLKEKIAE 45
VR+ G I+ VI + + ++ + + EEV +
Sbjct: 25 VRNGGRIVDVIVEHPVYGEIRGIIDVSSEEEVLKFVNLMEM 65
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.356
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 267,915
Number of extensions: 10313
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 35
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)