Query psy8527
Match_columns 209
No_of_seqs 221 out of 586
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 21:13:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8527.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8527hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zoq_C CREB-binding protein, i 21.4 73 0.0025 20.1 2.6 25 117-141 3-27 (47)
2 1zl8_A LIN-7; heterodimer, alp 21.0 53 0.0018 21.3 2.0 14 163-176 39-52 (53)
3 4htp_A DNA ligase 4; helical d 15.3 61 0.0021 26.8 1.6 14 7-20 178-191 (240)
4 1kbh_B CREB-binding protein, n 14.3 1.2E+02 0.0042 20.0 2.5 26 116-141 9-34 (59)
5 2jr2_A UPF0352 protein CPS_261 11.1 2.3E+02 0.0078 19.7 3.2 24 115-139 35-58 (76)
6 1v54_M VIIIB, IX, cytochrome C 10.9 1.5E+02 0.005 18.7 2.0 27 104-130 17-43 (46)
7 2y69_M Cytochrome C oxidase po 8.4 2.6E+02 0.009 19.0 2.7 28 103-130 40-67 (70)
8 2juz_A UPF0352 protein HI0840; 7.1 3.3E+02 0.011 19.1 2.8 26 115-140 35-60 (80)
9 2juw_A UPF0352 protein SO_2176 5.5 3.6E+02 0.012 18.8 2.2 24 116-139 36-59 (80)
10 2jpq_A UPF0352 protein VP2129; 5.3 3.7E+02 0.013 18.9 2.2 24 116-139 36-59 (83)
No 1
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=21.36 E-value=73 Score=20.12 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=20.8
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHH
Q psy8527 117 CQQIYMHLKWYTNPAEQRWIIRILF 141 (209)
Q Consensus 117 l~~i~~Hl~~y~~P~~Qr~IiRIl~ 141 (209)
+.++.+-+++=+.|++|-.++.|+=
T Consensus 3 LqqLl~tlksp~sp~qqqqvl~ILk 27 (47)
T 1zoq_C 3 LQDLLRTLKSPSSPQQQQQVLNILK 27 (47)
T ss_dssp HHHHHHTCCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4567777888889999999999974
No 2
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=21.01 E-value=53 Score=21.33 Aligned_cols=14 Identities=29% Similarity=0.607 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHH
Q psy8527 163 YIYFFTIRDCYEAF 176 (209)
Q Consensus 163 ~~y~~~ird~YEA~ 176 (209)
+-|++.+||+||-+
T Consensus 39 SdF~~aVREVYEhv 52 (53)
T 1zl8_A 39 SEFFGAVREVYETV 52 (53)
T ss_dssp CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 46899999999963
No 3
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=15.34 E-value=61 Score=26.78 Aligned_cols=14 Identities=36% Similarity=1.011 Sum_probs=12.2
Q ss_pred CCchhHHHHHHHHH
Q psy8527 7 TNPAEQRWIIRILF 20 (209)
Q Consensus 7 ~~P~~Qr~iiRIl~ 20 (209)
..|.|||+++|+++
T Consensus 178 ~t~~E~k~liRiil 191 (240)
T 4htp_A 178 SSALEQKWLIRMII 191 (240)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 46899999999975
No 4
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=14.31 E-value=1.2e+02 Score=19.96 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHH
Q psy8527 116 TCQQIYMHLKWYTNPAEQRWIIRILF 141 (209)
Q Consensus 116 sl~~i~~Hl~~y~~P~~Qr~IiRIl~ 141 (209)
.+.++.+-+++=+.|+.|-.++.||=
T Consensus 9 aLqqLl~tlksp~speqqqqvl~ILk 34 (59)
T 1kbh_B 9 ALQDLLRTLKSPSSPQQQQQVLNILK 34 (59)
T ss_dssp HHHHHHHHHHSCTTTTCSTHHHHHHT
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 35678888999999999999999973
No 5
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=11.06 E-value=2.3e+02 Score=19.67 Aligned_cols=24 Identities=8% Similarity=0.030 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHH
Q psy8527 115 LTCQQIYMHLKWYTNPAEQRWIIRI 139 (209)
Q Consensus 115 isl~~i~~Hl~~y~~P~~Qr~IiRI 139 (209)
+.+-++..++.| +.|..||..+-=
T Consensus 35 MvLGN~vTnlln-~V~~~qR~~iAe 58 (76)
T 2jr2_A 35 MCLGNAVTNIIA-QVPESKRVAVVD 58 (76)
T ss_dssp HHHHHHHHHHHT-TSCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHH
Confidence 344588899999 999999987643
No 6
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=10.89 E-value=1.5e+02 Score=18.69 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCc
Q psy8527 104 LASAFVGAALFLTCQQIYMHLKWYTNP 130 (209)
Q Consensus 104 I~g~~~~la~iisl~~i~~Hl~~y~~P 130 (209)
+......+++++--.-++.|+.+|.+.
T Consensus 17 igl~v~f~~~L~PagWVLshL~~YKk~ 43 (46)
T 1v54_M 17 IGLSVTFLSFLLPAGWVLYHLDNYKKS 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHTC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 333334455666667789999999877
No 7
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=8.38 E-value=2.6e+02 Score=19.03 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCc
Q psy8527 103 GLASAFVGAALFLTCQQIYMHLKWYTNP 130 (209)
Q Consensus 103 ~I~g~~~~la~iisl~~i~~Hl~~y~~P 130 (209)
.|......+++++--.-++.|+.+|.+.
T Consensus 40 aigltv~f~~~L~PagWVLshLe~YKk~ 67 (70)
T 2y69_M 40 AIGLSVTFLSFLLPAGWVLYHLDNYKKS 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHSCC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 3433334555666667789999999987
No 8
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=7.14 E-value=3.3e+02 Score=19.05 Aligned_cols=26 Identities=12% Similarity=-0.006 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHH
Q psy8527 115 LTCQQIYMHLKWYTNPAEQRWIIRIL 140 (209)
Q Consensus 115 isl~~i~~Hl~~y~~P~~Qr~IiRIl 140 (209)
+.+-++..|+.|-+.|..||..+-=-
T Consensus 35 MvLGN~vTnlln~~V~~~qR~~iAe~ 60 (80)
T 2juz_A 35 IALGNMASNLLTTSVPQTQCEALAQA 60 (80)
T ss_dssp HHHHHHHHHHHTTSSCSTTHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 34458899999999999999876543
No 9
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=5.47 E-value=3.6e+02 Score=18.84 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHH
Q psy8527 116 TCQQIYMHLKWYTNPAEQRWIIRI 139 (209)
Q Consensus 116 sl~~i~~Hl~~y~~P~~Qr~IiRI 139 (209)
.+-++..|+.|-+.|..||..+-=
T Consensus 36 vLGN~vTnlln~~V~~~qR~~iAe 59 (80)
T 2juw_A 36 ALGNCVTHLLERKVPSESRQAVAE 59 (80)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHH
Confidence 344888899999999999987643
No 10
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=5.32 E-value=3.7e+02 Score=18.90 Aligned_cols=24 Identities=21% Similarity=0.062 Sum_probs=18.8
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHH
Q psy8527 116 TCQQIYMHLKWYTNPAEQRWIIRI 139 (209)
Q Consensus 116 sl~~i~~Hl~~y~~P~~Qr~IiRI 139 (209)
.+-++..++.|-+.|..||..+-=
T Consensus 36 vLGNmvTNlln~~V~~~qR~~iAe 59 (83)
T 2jpq_A 36 IAGNIATNVLNQRVAASQRKLIAE 59 (83)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHH
Confidence 344888899999999999987643
Done!