Query psy8527
Match_columns 209
No_of_seqs 221 out of 586
Neff 5.9
Searched_HMMs 13730
Date Fri Aug 16 21:13:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8527.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8527hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rzhh2 f.23.10.1 (H:11-35) Ph 31.0 9.1 0.00066 19.9 1.1 18 176-193 8-25 (26)
2 d1zl8a1 a.194.1.1 (A:4-53) Lin 26.4 17 0.0012 21.9 2.0 14 163-176 36-49 (50)
3 d1y74a1 a.194.1.1 (A:17-73) Li 21.1 24 0.0017 21.7 1.9 14 163-176 37-50 (57)
4 d1zoqc1 a.153.1.1 (C:2065-2111 17.6 47 0.0034 19.3 2.6 26 117-142 3-28 (47)
5 d2juza1 a.284.1.1 (A:1-72) Unc 11.7 80 0.0059 20.1 2.8 24 115-138 35-58 (72)
6 d2jpqa1 a.284.1.1 (A:1-75) Hyp 9.4 84 0.0061 20.2 2.2 24 116-139 36-59 (75)
7 d2otaa1 a.284.1.1 (A:7-68) Hyp 9.0 1.5E+02 0.011 18.3 3.2 21 117-138 31-51 (62)
8 d2qtia1 a.284.1.1 (A:8-72) Unc 8.9 67 0.0049 20.1 1.5 23 116-138 29-51 (65)
9 d1eysh2 f.23.10.1 (H:7-43) Pho 8.3 66 0.0048 17.9 1.1 18 176-193 11-28 (37)
10 d1x9na1 a.235.1.1 (A:262-533) 8.0 64 0.0047 25.2 1.4 14 7-20 173-186 (272)
No 1
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=30.97 E-value=9.1 Score=19.90 Aligned_cols=18 Identities=28% Similarity=0.443 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhccCch
Q psy8527 176 FVIYSFLSLCYEYLGGEG 193 (209)
Q Consensus 176 ~viy~F~~Ll~~ylgg~~ 193 (209)
+..+.||.+++-|+..|+
T Consensus 8 w~fw~ffalli~ylqten 25 (26)
T d1rzhh2 8 YSFWIFLAGLIYYLQTEN 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 456779999999886553
No 2
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=26.43 E-value=17 Score=21.86 Aligned_cols=14 Identities=29% Similarity=0.607 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHH
Q psy8527 163 YIYFFTIRDCYEAF 176 (209)
Q Consensus 163 ~~y~~~ird~YEA~ 176 (209)
+-|++.+||+||-+
T Consensus 36 SdF~~avREVYe~v 49 (50)
T d1zl8a1 36 SEFFGAVREVYETV 49 (50)
T ss_dssp CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 46999999999953
No 3
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.13 E-value=24 Score=21.70 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHH
Q psy8527 163 YIYFFTIRDCYEAF 176 (209)
Q Consensus 163 ~~y~~~ird~YEA~ 176 (209)
+-|++.+||+||-+
T Consensus 37 SdF~~avREVYehv 50 (57)
T d1y74a1 37 SRFCSAIREVYEQL 50 (57)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57999999999964
No 4
>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.59 E-value=47 Score=19.29 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=20.7
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHH
Q psy8527 117 CQQIYMHLKWYTNPAEQRWIIRILFI 142 (209)
Q Consensus 117 l~~i~~Hl~~y~~P~~Qr~IiRIl~m 142 (209)
+.+..+-+++=+.|.+|.+++-|+=-
T Consensus 3 lq~Ll~tLrsP~sP~QQqQvL~ILks 28 (47)
T d1zoqc1 3 LQDLLRTLKSPSSPQQQQQVLNILKS 28 (47)
T ss_dssp HHHHHHTCCSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 45667778888999999999988743
No 5
>d2juza1 a.284.1.1 (A:1-72) Uncharacterized protein HI0840 {Haemophilus influenzae [TaxId: 727]}
Probab=11.70 E-value=80 Score=20.12 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHH
Q psy8527 115 LTCQQIYMHLKWYTNPAEQRWIIR 138 (209)
Q Consensus 115 isl~~i~~Hl~~y~~P~~Qr~IiR 138 (209)
+.+-++..|+.|-..|..||..+-
T Consensus 35 MvLGN~vTniln~~V~~~qR~~iA 58 (72)
T d2juza1 35 IALGNMASNLLTTSVPQTQCEALA 58 (72)
T ss_dssp HHHHHHHHHHHTTSSCSTTHHHHH
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHH
Confidence 344588999999999999998764
No 6
>d2jpqa1 a.284.1.1 (A:1-75) Hypothetical protein VP2129 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=9.37 E-value=84 Score=20.17 Aligned_cols=24 Identities=21% Similarity=0.062 Sum_probs=19.4
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHH
Q psy8527 116 TCQQIYMHLKWYTNPAEQRWIIRI 139 (209)
Q Consensus 116 sl~~i~~Hl~~y~~P~~Qr~IiRI 139 (209)
.+-++..|+.|-..|..||..+-=
T Consensus 36 vLGN~vTniln~~V~~~qR~~iAe 59 (75)
T d2jpqa1 36 IAGNIATNVLNQRVAASQRKLIAE 59 (75)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 344888999999999999987643
No 7
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=8.95 E-value=1.5e+02 Score=18.25 Aligned_cols=21 Identities=10% Similarity=0.058 Sum_probs=16.0
Q ss_pred HHHHHHHHhCCCCchhHHHHHH
Q psy8527 117 CQQIYMHLKWYTNPAEQRWIIR 138 (209)
Q Consensus 117 l~~i~~Hl~~y~~P~~Qr~IiR 138 (209)
+-++..|+.+ ..|..||..+-
T Consensus 31 LGN~vTnii~-~V~~~qR~~iA 51 (62)
T d2otaa1 31 LGNAVTNIIA-QVPESKRVAVV 51 (62)
T ss_dssp HHHHHHHHHT-TSCGGGHHHHH
T ss_pred HHHHHHHHHH-hCCHHHHHHHH
Confidence 3477788886 78999998764
No 8
>d2qtia1 a.284.1.1 (A:8-72) Uncharacterized protein SO2176 {Shewanella oneidensis [TaxId: 70863]}
Probab=8.87 E-value=67 Score=20.12 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=18.8
Q ss_pred HHHHHHHHHhCCCCchhHHHHHH
Q psy8527 116 TCQQIYMHLKWYTNPAEQRWIIR 138 (209)
Q Consensus 116 sl~~i~~Hl~~y~~P~~Qr~IiR 138 (209)
.+-++..|+.|-..|..||..+-
T Consensus 29 vLGN~vTniln~~V~~~qR~~iA 51 (65)
T d2qtia1 29 ALGNCVTHLLERKVPSESRQAVA 51 (65)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHH
Confidence 34588899999999999997764
No 9
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=8.26 E-value=66 Score=17.93 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhccCch
Q psy8527 176 FVIYSFLSLCYEYLGGEG 193 (209)
Q Consensus 176 ~viy~F~~Ll~~ylgg~~ 193 (209)
++.+.||..++-|+-.|+
T Consensus 11 y~Fw~FFagLi~YL~rE~ 28 (37)
T d1eysh2 11 WAFWLFFFGLIIYLRRED 28 (37)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 456678888998886553
No 10
>d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.04 E-value=64 Score=25.19 Aligned_cols=14 Identities=36% Similarity=0.449 Sum_probs=11.9
Q ss_pred CCchhHHHHHHHHH
Q psy8527 7 TNPAEQRWIIRILF 20 (209)
Q Consensus 7 ~~P~~Qr~iiRIl~ 20 (209)
.+|.|+|+++|++.
T Consensus 173 ~~~~E~kyliR~l~ 186 (272)
T d1x9na1 173 CRHSEARFIARSLS 186 (272)
T ss_dssp CCSTHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHH
Confidence 47899999999874
Done!