RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8527
         (209 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 34/164 (20%), Positives = 53/164 (32%), Gaps = 45/164 (27%)

Query: 1    MHLKWYTNPAEQR--WIIRI-LFIVPIYALHSLVSLLFFNNENYYIYFF-----TIRDCY 52
            M L  Y      +  W  R        Y   S++ ++  N  N  I+F       IR+ Y
Sbjct: 1633 MDL--YKTSKAAQDVWN-RADNHFKDTYGF-SILDIVINNPVNLTIHFGGEKGKRIRENY 1688

Query: 53   EARPLTEVVTATIPPQEILAEMTSTSTVAPTIFPFIQPVHPI-FL-QTKTAQGLASAFVG 110
             A     +V   +  ++I  E+   ST     F           L  T+  Q        
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHST--SYTFR-----SEKGLLSATQFTQ-------- 1733

Query: 111  AALFLTCQQIYMHLKWYTNPAEQRWIIRILFIVPIYAL---HSL 151
             AL L  +  +  LK     ++         ++P  A    HSL
Sbjct: 1734 PALTLMEKAAFEDLK-----SK--------GLIPADATFAGHSL 1764



 Score = 31.6 bits (71), Expect = 0.21
 Identities = 31/211 (14%), Positives = 55/211 (26%), Gaps = 78/211 (36%)

Query: 16  IRILFIVPIYALHSLVSLLFFNNENYYIYFFTIRDCYEARPLTEVVTATIP-PQEILAEM 74
           +  + +VP  A   + S L              ++ +            +P P E  A  
Sbjct: 16  LEHVLLVP-TASFFIASQL--------------QEQF---------NKILPEPTEGFAAD 51

Query: 75  TSTSTVAPTIFPFIQPVHPIFLQTKTAQGLASAF---VGAAL------FLTCQQIYMH-- 123
              +T A  +  F+      ++ +         F   +   L      +L    I  H  
Sbjct: 52  DEPTTPAELVGKFLG-----YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI--HAL 104

Query: 124 -----LKWYTNPAEQRWIIRILFIV------PIYALHSLVSLLFFNNENYYIYFFTIRDC 172
                 +  T   + + +I+           P     +  S LF            I   
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN--SALFRAVGEGNAQLVAI--- 159

Query: 173 YEAFVIYSFLSLCYEYLGGEGNI---MSEIR 200
                   F        GG+GN      E+R
Sbjct: 160 --------F--------GGQGNTDDYFEELR 174


>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A
           {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
          Length = 112

 Score = 26.5 bits (59), Expect = 3.3
 Identities = 6/25 (24%), Positives = 8/25 (32%), Gaps = 3/25 (12%)

Query: 106 SAFVGAALFLTC---QQIYMHLKWY 127
           +      L + C      Y  L WY
Sbjct: 11  ALSEEDFLTIHCNYSASGYPALFWY 35


>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein
           transport; 1.95A {Saccharomyces cerevisiae}
          Length = 392

 Score = 27.1 bits (59), Expect = 4.5
 Identities = 6/59 (10%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 36  FNNENYYIYFFTIRDCYEARPL--TEVVTATIPPQEILAEMTSTSTVAPTIFPFIQPVH 92
              +N +IY  ++    +   +   + + +    + +   M   +    +++  I P+ 
Sbjct: 317 LIKDNDFIYHESVPAVVQVDSIKALDAIKSPTWEKILEPYMQDVANKYDSLYRGIIPLD 375


>3s6n_2 SurviVal of motor neuron protein-interacting PROT; SMN complex,
           SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS,
           snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo
           sapiens}
          Length = 280

 Score = 26.7 bits (58), Expect = 5.2
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 44  YFFTIRDCYEARPLTEVVTATIPPQEILAEMTSTSTVAPTIFPFIQPVHPIFLQTK 99
           Y   ++   EA    +VV A I P+++  + +   +++       QP    +  T 
Sbjct: 52  YLRRVQ--IEAAQCPDVVVAQIDPKKLKRKQSVNISLSG-----CQPAPEGYSPTL 100


>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7,
           activated mutant, ATP-binding, structural genomics,
           NPPSFA; 2.45A {Homo sapiens}
          Length = 318

 Score = 26.6 bits (59), Expect = 6.8
 Identities = 8/41 (19%), Positives = 17/41 (41%)

Query: 169 IRDCYEAFVIYSFLSLCYEYLGGEGNIMSEIRGKPIKARQI 209
           I  C+  F+  + + +  E +G     + +    PI  R +
Sbjct: 86  IVQCFGTFITNTDVFIAMELMGTCAEKLKKRMQGPIPERIL 126


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.330    0.143    0.455 

Gapped
Lambda     K      H
   0.267   0.0472    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,294,721
Number of extensions: 184619
Number of successful extensions: 440
Number of sequences better than 10.0: 1
Number of HSP's gapped: 439
Number of HSP's successfully gapped: 11
Length of query: 209
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 120
Effective length of database: 4,216,824
Effective search space: 506018880
Effective search space used: 506018880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.6 bits)