RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8527
         (209 letters)



>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma
           constant domain 1, CH1-gamma {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 101

 Score = 24.6 bits (53), Expect = 4.7
 Identities = 8/39 (20%), Positives = 14/39 (35%)

Query: 78  STVAPTIFPFIQPVHPIFLQTKTAQGLASAFVGAALFLT 116
           ST AP++FP +           T   L   +    + + 
Sbjct: 2   STTAPSVFPLVPGSATAAASAVTLGCLVKGYFPEPVTVA 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.143    0.455 

Gapped
Lambda     K      H
   0.267   0.0594    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 832,305
Number of extensions: 37441
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 8
Length of query: 209
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,295,466
Effective search space: 165819648
Effective search space used: 165819648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.7 bits)