BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8528
         (240 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|91079340|ref|XP_969318.1| PREDICTED: similar to CG5703 CG5703-PA [Tribolium castaneum]
 gi|270004890|gb|EFA01338.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Tribolium
           castaneum]
          Length = 243

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 130/256 (50%), Positives = 159/256 (62%), Gaps = 55/256 (21%)

Query: 1   MLSNLAKLASNVVRQ-NVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAI 59
           ML+ +  + S + R   VRSL T   L H+A+F HRDT +DN D+ F+FTP+NKKRA+AI
Sbjct: 1   MLTTIKTVGSCLRRTLGVRSLQTASTLQHEAVFNHRDTPEDNPDIPFDFTPENKKRADAI 60

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           ++IYP GH+RAA+IPLLDLAQRQHGWLPISAMH VA+ LNLP+MRVYEVATFYTMF+RKP
Sbjct: 61  LAIYPEGHKRAAMIPLLDLAQRQHGWLPISAMHKVAEILNLPRMRVYEVATFYTMFMRKP 120

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLE----------------- 162
            G        +YH+  CTTTPCWLR SD IL+ I  KCN+ LE                 
Sbjct: 121 TG--------KYHIQVCTTTPCWLRGSDEILDTI--KCNLKLEVGETSSDGMFTLSEVEC 170

Query: 163 ----------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAR 206
                            +DL  KD E+I++DLK  KKP PGP         ++GRF  A 
Sbjct: 171 LGACVNAPMIQVNDDYYEDLTAKDTEEILNDLKNNKKPKPGP---------RNGRF--AA 219

Query: 207 EAYHDMTSLTGEPHGP 222
           E   + T L GEP GP
Sbjct: 220 EPIGEPTCLAGEPPGP 235


>gi|193669336|ref|XP_001946901.1| PREDICTED: probable NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Acyrthosiphon pisum]
          Length = 240

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 129/253 (50%), Positives = 159/253 (62%), Gaps = 52/253 (20%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           MLS L K+A  ++  N R+  T+  L HD +F HRDTK+DNLD+KFEF+ +NKKR +AI+
Sbjct: 1   MLS-LNKIAKCLL-SNSRTFQTSAVLKHDTMFNHRDTKEDNLDIKFEFSDENKKRIDAIL 58

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           +IYP GH+RAA+IPLLDLAQRQHGWLPISAMH VAD L+LPKMRVYEVATFYTMF+RKP 
Sbjct: 59  AIYPEGHKRAAMIPLLDLAQRQHGWLPISAMHKVADVLDLPKMRVYEVATFYTMFMRKPT 118

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------- 163
           G        +YHL  CTTTPCWLR SD ++  +KKK ++ +                   
Sbjct: 119 G--------KYHLQVCTTTPCWLRGSDDVISCLKKKLDIGVGETSKDGQWTLSEVECLGA 170

Query: 164 --------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL  KD+E IIDDLK GK P PGP         +S R+  A E  
Sbjct: 171 CVNAPMMQVNDDYFEDLTTKDVESIIDDLKNGKTPTPGP---------RSSRY--ASEPM 219

Query: 210 HDMTSLTGEPHGP 222
             +TSL  EP+GP
Sbjct: 220 DGLTSLKEEPYGP 232


>gi|332374938|gb|AEE62610.1| unknown [Dendroctonus ponderosae]
          Length = 243

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 123/235 (52%), Positives = 148/235 (62%), Gaps = 50/235 (21%)

Query: 16  NVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPL 75
            +RSL TT    HD+LFVHRDT +DN D+ FEF+ DNKKR EAI++IYP GH+RAA+IPL
Sbjct: 17  GLRSLQTTASRAHDSLFVHRDTPEDNPDIPFEFSADNKKRVEAILAIYPEGHKRAAMIPL 76

Query: 76  LDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNW 135
           LDLAQRQ+GWLPISAMH+VAD L LPKMRVYEVATFYTMF+RKP G        +YHL  
Sbjct: 77  LDLAQRQYGWLPISAMHHVADILKLPKMRVYEVATFYTMFMRKPTG--------KYHLQV 128

Query: 136 CTTTPCWLRNSDAILEVIKKKCNMMLER-------------------------------Q 164
           CTTTPCWLR S+ IL+ IKK   + +                                 +
Sbjct: 129 CTTTPCWLRGSNEILDTIKKNLGLEVGETSSDKLFTISEVECLGACVNAPMVQINDDYYE 188

Query: 165 DLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEP 219
           DL  +D E+I+ DLKAG+KP PGP         +SGR+  A E   + TSL GEP
Sbjct: 189 DLTVQDTEEILADLKAGRKPKPGP---------RSGRY--AAEPIGEPTSLKGEP 232


>gi|194766874|ref|XP_001965549.1| GF22392 [Drosophila ananassae]
 gi|190619540|gb|EDV35064.1| GF22392 [Drosophila ananassae]
          Length = 242

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 123/253 (48%), Positives = 152/253 (60%), Gaps = 50/253 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML+N A    + VR  +R+++T+     D LFVHRDT +DN ++ FEFTP+NKKR EAI+
Sbjct: 1   MLTNCAAKTLSAVRCGIRAIATSSARASDNLFVHRDTPEDNPNIPFEFTPENKKRVEAIL 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           SIYP GH+R A+IPLLDLAQRQ+GWLPISAMH VA+ L LP MRVYEVATFYTMF+RKP 
Sbjct: 61  SIYPEGHKRGAMIPLLDLAQRQYGWLPISAMHKVAEILELPNMRVYEVATFYTMFMRKPT 120

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------- 163
           G        +YH+  CTTTPCWLR SD ILE  KK+ ++ +                   
Sbjct: 121 G--------KYHIQVCTTTPCWLRGSDEILETCKKQLSIGVGETTKDKKFTISEVECLGA 172

Query: 164 --------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL  KDM+ I+ DLKA K   PGP         ++GRF  A E  
Sbjct: 173 CVNAPMVSVNDDYYEDLTAKDMQNILADLKADKPSPPGP---------RNGRF--ASEPK 221

Query: 210 HDMTSLTGEPHGP 222
            + TSL  EP GP
Sbjct: 222 GEPTSLIEEPKGP 234


>gi|195481106|ref|XP_002101517.1| GE17674 [Drosophila yakuba]
 gi|194189041|gb|EDX02625.1| GE17674 [Drosophila yakuba]
          Length = 242

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 123/253 (48%), Positives = 152/253 (60%), Gaps = 50/253 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML+N A      VR N+R+++T+     D LFVHRDT +DN ++ FEFT +NKKR EAI+
Sbjct: 1   MLTNCASKTLAAVRANIRAIATSSARASDNLFVHRDTPEDNPNIPFEFTAENKKRVEAIL 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           SIYP GH+R A+IPLLDLAQRQ+GWLPISAMH VA+ L LP MRVYEVATFYTMF+RKP 
Sbjct: 61  SIYPEGHKRGAMIPLLDLAQRQYGWLPISAMHKVAEILQLPNMRVYEVATFYTMFMRKPT 120

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLE------------------ 162
           G        +YH+  CTTTPCWLR SD ILE  KK+  + +                   
Sbjct: 121 G--------KYHIQVCTTTPCWLRGSDDILETCKKQLGIGVGDTTKDKKFTISEVECLGA 172

Query: 163 -------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL  KDM+ I++DLKA K   PGP         ++GRF  A E  
Sbjct: 173 CVNAPMVAINDDYYEDLTAKDMQDILNDLKADKISPPGP---------RNGRF--ASEPK 221

Query: 210 HDMTSLTGEPHGP 222
            + TSL+ EP GP
Sbjct: 222 GEPTSLSEEPKGP 234


>gi|194892023|ref|XP_001977580.1| GG19123 [Drosophila erecta]
 gi|190649229|gb|EDV46507.1| GG19123 [Drosophila erecta]
          Length = 242

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 123/253 (48%), Positives = 152/253 (60%), Gaps = 50/253 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML+N A      VR N+R+++T+     D LFVHRDT +DN ++ FEFT +NKKR EAI+
Sbjct: 1   MLTNCASKTLAAVRANIRAIATSSARASDNLFVHRDTPEDNPNIPFEFTAENKKRVEAIL 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           SIYP GH+R A+IPLLDLAQRQ+GWLPISAMH VA+ L LP MRVYEVATFYTMF+RKP 
Sbjct: 61  SIYPEGHKRGAMIPLLDLAQRQYGWLPISAMHKVAEILQLPNMRVYEVATFYTMFMRKPT 120

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLE------------------ 162
           G        +YH+  CTTTPCWLR SD ILE  KK+  + +                   
Sbjct: 121 G--------KYHIQVCTTTPCWLRGSDDILETCKKQLGIGVGDTTKDKKFTISEVECLGA 172

Query: 163 -------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL  KDM+ I++DLKA K   PGP         ++GRF  A E  
Sbjct: 173 CVNAPMVAINDDYYEDLTAKDMQDILNDLKADKISPPGP---------RNGRF--ASEPK 221

Query: 210 HDMTSLTGEPHGP 222
            + TSL+ EP GP
Sbjct: 222 GEPTSLSEEPKGP 234


>gi|18859877|ref|NP_573228.1| CG5703 [Drosophila melanogaster]
 gi|195351760|ref|XP_002042397.1| GM13517 [Drosophila sechellia]
 gi|195567381|ref|XP_002107239.1| GD15675 [Drosophila simulans]
 gi|7293367|gb|AAF48745.1| CG5703 [Drosophila melanogaster]
 gi|194124240|gb|EDW46283.1| GM13517 [Drosophila sechellia]
 gi|194204644|gb|EDX18220.1| GD15675 [Drosophila simulans]
 gi|220944522|gb|ACL84804.1| CG5703-PA [synthetic construct]
 gi|220954400|gb|ACL89743.1| CG5703-PA [synthetic construct]
          Length = 242

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 123/253 (48%), Positives = 152/253 (60%), Gaps = 50/253 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML+N A      VR N+R+++T+     D LFVHRDT +DN ++ FEFT +NKKR EAI+
Sbjct: 1   MLTNCASKTLAAVRANIRAIATSSARASDNLFVHRDTPEDNPNIPFEFTAENKKRVEAIL 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           SIYP GH+R A+IPLLDLAQRQ+GWLPISAMH VA+ L LP MRVYEVATFYTMF+RKP 
Sbjct: 61  SIYPEGHKRGAMIPLLDLAQRQYGWLPISAMHKVAEILQLPNMRVYEVATFYTMFMRKPT 120

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLE------------------ 162
           G        +YH+  CTTTPCWLR SD ILE  KK+  + +                   
Sbjct: 121 G--------KYHIQVCTTTPCWLRGSDDILETCKKQLGIGVGDTTKDRKFTISEVECLGA 172

Query: 163 -------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL  KDM+ I++DLKA K   PGP         ++GRF  A E  
Sbjct: 173 CVNAPMVAINDDYYEDLTSKDMQDILNDLKADKISPPGP---------RNGRF--ASEPK 221

Query: 210 HDMTSLTGEPHGP 222
            + TSL+ EP GP
Sbjct: 222 GEPTSLSEEPKGP 234


>gi|27820078|gb|AAL68189.2| GH08937p, partial [Drosophila melanogaster]
          Length = 269

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 123/253 (48%), Positives = 152/253 (60%), Gaps = 50/253 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML+N A      VR N+R+++T+     D LFVHRDT +DN ++ FEFT +NKKR EAI+
Sbjct: 28  MLTNCASKTLAAVRANIRAIATSSARASDNLFVHRDTPEDNPNIPFEFTAENKKRVEAIL 87

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           SIYP GH+R A+IPLLDLAQRQ+GWLPISAMH VA+ L LP MRVYEVATFYTMF+RKP 
Sbjct: 88  SIYPEGHKRGAMIPLLDLAQRQYGWLPISAMHKVAEILQLPNMRVYEVATFYTMFMRKPT 147

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLE------------------ 162
           G        +YH+  CTTTPCWLR SD ILE  KK+  + +                   
Sbjct: 148 G--------KYHIQVCTTTPCWLRGSDDILETCKKQLGIGVGDTTKDRKFTISEVECLGA 199

Query: 163 -------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL  KDM+ I++DLKA K   PGP         ++GRF  A E  
Sbjct: 200 CVNAPMVAINDDYYEDLTSKDMQDILNDLKADKISPPGP---------RNGRF--ASEPK 248

Query: 210 HDMTSLTGEPHGP 222
            + TSL+ EP GP
Sbjct: 249 GEPTSLSEEPKGP 261


>gi|388514315|gb|AFK45219.1| unknown [Lotus japonicus]
          Length = 241

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 124/253 (49%), Positives = 154/253 (60%), Gaps = 51/253 (20%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           MLS+  +L + V  +NVR+  ++  +  D LFVHRDT +DN    FEFT +NKKRA+AI+
Sbjct: 1   MLSSAKRLFA-VASRNVRNFQSSSSVLSDNLFVHRDTPEDNASTPFEFTAENKKRADAIL 59

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           SIYP GH+RAA+IPLLDLAQRQHGWLPISAMH VA+ L+LP MRVYEVATFYTMF+RKP 
Sbjct: 60  SIYPEGHKRAAMIPLLDLAQRQHGWLPISAMHKVAEILDLPNMRVYEVATFYTMFMRKPT 119

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------- 163
           G        +YH+  CTTTPCWLR SD +LE  KK+  + +                   
Sbjct: 120 G--------KYHIQVCTTTPCWLRGSDEVLEACKKQIGIGVGETSKDMKFTISEVECLGA 171

Query: 164 --------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL  KD E+II  LK G KP P         G ++GRF  A E++
Sbjct: 172 CVNAPMMAVNDDYYEDLTAKDTEEIIQALKNG-KPTPA--------GPRNGRF--ASESH 220

Query: 210 HDMTSLTGEPHGP 222
             +TSLT EP GP
Sbjct: 221 GQLTSLTEEPKGP 233


>gi|195131273|ref|XP_002010075.1| GI14890 [Drosophila mojavensis]
 gi|193908525|gb|EDW07392.1| GI14890 [Drosophila mojavensis]
          Length = 242

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 121/253 (47%), Positives = 152/253 (60%), Gaps = 50/253 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           MLSN A      VR ++R+++T+     D LFVHRDT +DN ++ FEF+ +NKKR EAI+
Sbjct: 1   MLSNCAAKTLAAVRGSLRAIATSSAQRSDNLFVHRDTPEDNPNIPFEFSAENKKRVEAIL 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           SIYP GH+R A+IPLLDLAQRQ+GWLPISAMH VA+ L LP MRVYEVATFYTMF+RKP 
Sbjct: 61  SIYPEGHKRGAMIPLLDLAQRQYGWLPISAMHKVAEILGLPNMRVYEVATFYTMFMRKPT 120

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------- 163
           G        +YH+  CTTTPCWLR SD ILE  KK+  + +                   
Sbjct: 121 G--------KYHIQVCTTTPCWLRGSDEILETCKKQLGIGVGETTKDKKFTISEVECLGA 172

Query: 164 --------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL  KDM++I++DLKA K   PGP         ++GRF  A E  
Sbjct: 173 CVNAPMVSINDDYYEDLTGKDMQEILNDLKADKISPPGP---------RNGRF--ASEPK 221

Query: 210 HDMTSLTGEPHGP 222
            + TSL  +P GP
Sbjct: 222 GEPTSLIEDPKGP 234


>gi|389609563|dbj|BAM18393.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Papilio xuthus]
          Length = 244

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 125/260 (48%), Positives = 160/260 (61%), Gaps = 51/260 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           MLS+L      + R + R+L TT  L HD+LFVHRDT +DN ++ FEFTP+N KR EA++
Sbjct: 1   MLSSLRTGIQGLWRVSSRALQTTTSLQHDSLFVHRDTPEDNPNIPFEFTPENNKRIEALL 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           +IYP GH+R A+IPLLDLAQRQ+ GWLPISAMH VA+ LNLP+MRVYEVATFYTMFIR+P
Sbjct: 61  AIYPEGHKRGAMIPLLDLAQRQNGGWLPISAMHKVAELLNLPRMRVYEVATFYTMFIRRP 120

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--CNM------------------ 159
           IG        +YH+  CTTTPCWLR SD +L  IK+   C +                  
Sbjct: 121 IG--------KYHVQVCTTTPCWLRGSDIVLNAIKEATGCEVGGNSPCGKFSISEVECLG 172

Query: 160 ------MLE-----RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREA 208
                 M++      +DL  +D ++II+ LK  +KP PGP         +SGR+  A E 
Sbjct: 173 ACVNAPMIQVNDDYYEDLTVEDTKEIIEKLKRDEKPKPGP---------RSGRY--ASEP 221

Query: 209 YHDMTSLTGEPHGPWDSKRD 228
              +TSLT EP GP    +D
Sbjct: 222 LGGLTSLTEEPTGPGFGLQD 241


>gi|114053075|ref|NP_001040535.1| NADH-ubiquinone reductase [Bombyx mori]
 gi|95102970|gb|ABF51426.1| NADH-ubiquinone reductase [Bombyx mori]
          Length = 245

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 126/260 (48%), Positives = 156/260 (60%), Gaps = 51/260 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           MLS+L      + R + RS+ TT    HD+LFVHRDT +DN  + FEF+  N+KR EA++
Sbjct: 1   MLSSLRTGVQGLWRISSRSIQTTASRQHDSLFVHRDTPEDNPSIPFEFSQANQKRVEALL 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           +IYP GH+R A+IPLLDLAQRQ  GWLPISAMH VA+ LNLPKMRVYEVATFYTMFIR+P
Sbjct: 61  AIYPEGHKRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRP 120

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM-------------------- 159
           IG        +YH+  CTTTPCWLR SDAIL  IK++ N                     
Sbjct: 121 IG--------KYHVQVCTTTPCWLRGSDAILNAIKQETNCEVGGNSPCGKFSVSEVECLG 172

Query: 160 ------MLE-----RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREA 208
                 M++      +DL  +D ++II  LK  +KP PGP         +SGRF  A E 
Sbjct: 173 ACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEKPKPGP---------RSGRF--ASEP 221

Query: 209 YHDMTSLTGEPHGPWDSKRD 228
              +TSLT EP GP    +D
Sbjct: 222 LGGLTSLTEEPTGPGFGVQD 241


>gi|195049609|ref|XP_001992752.1| GH24933 [Drosophila grimshawi]
 gi|193893593|gb|EDV92459.1| GH24933 [Drosophila grimshawi]
          Length = 242

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 150/253 (59%), Gaps = 50/253 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           MLSN A      VR ++R+++T+     D LFVHRDT +DN  + FEF+ +NKKR +AI+
Sbjct: 1   MLSNCAAKTLAAVRGSLRTIATSSAQRSDNLFVHRDTPEDNPSIPFEFSAENKKRVDAIL 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           SIYP GH+R A+IPLLDLAQRQ+GWLPISAMH VAD L LP MRVYEVATFYTMF+RKP 
Sbjct: 61  SIYPEGHKRGAMIPLLDLAQRQYGWLPISAMHKVADILGLPNMRVYEVATFYTMFMRKPT 120

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------- 163
           G        +YH+  CTTTPCWLR SD ILE  KK+  + +                   
Sbjct: 121 G--------KYHIQVCTTTPCWLRGSDEILEQCKKQLAIGVGETTKDNKFTISEVECLGA 172

Query: 164 --------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL  KDM+ I+ DLKA K   PGP         ++GRF  A E  
Sbjct: 173 CVNAPMVSINDDYYEDLTAKDMQDILSDLKADKISPPGP---------RNGRF--ASEPK 221

Query: 210 HDMTSLTGEPHGP 222
            + TSL+ EP GP
Sbjct: 222 GNPTSLSEEPKGP 234


>gi|427787135|gb|JAA59019.1| Putative nadh:ubiquinone oxidoreductase ndufv2/24 kd subunit
           [Rhipicephalus pulchellus]
          Length = 244

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 119/251 (47%), Positives = 156/251 (62%), Gaps = 50/251 (19%)

Query: 3   SNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISI 62
           S LA  AS++ RQ  R++S +  L  D LFVHRD + +N  VKFEFTP+N KRAEAI SI
Sbjct: 5   SRLAVRASSLWRQGPRNVSVSSALRSDQLFVHRDDERNNAKVKFEFTPENAKRAEAITSI 64

Query: 63  YPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGE 122
           YP GH+ AAVIPLLDLAQRQHGWLP++AMHYVAD+L +P+MRVYEVATFYTMF+R+P+G 
Sbjct: 65  YPEGHKNAAVIPLLDLAQRQHGWLPLTAMHYVADYLGMPRMRVYEVATFYTMFMRQPVG- 123

Query: 123 ERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM----------------------- 159
                  +YH+  CTTTPC LR ++ I   +++K  +                       
Sbjct: 124 -------RYHVQVCTTTPCMLRGAEDIQACVERKLGIRPGETTSDGLFTLSVVECLGACV 176

Query: 160 ---MLE-----RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHD 211
              ML+      +DLE KD+++++D  K G++P PGP         +SGRF  + E    
Sbjct: 177 NAPMLQVNDDYYEDLEAKDVDELLDAFKRGERPKPGP---------RSGRF--SCEPAKG 225

Query: 212 MTSLTGEPHGP 222
           +TSLT  P GP
Sbjct: 226 LTSLTEPPKGP 236


>gi|289739805|gb|ADD18650.1| mitochondrial NADH-ubiquinone oxidoreductase 24 kDa subunit
           precursor [Glossina morsitans morsitans]
          Length = 242

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 149/253 (58%), Gaps = 50/253 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML+N    +   VR  VR+++T+   N D LFVHRDT +DN DV FEFT +N+KR +AI+
Sbjct: 1   MLANYISRSLQSVRNGVRAIATSTVQNSDNLFVHRDTPEDNPDVPFEFTAENQKRVDAIL 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           SIYP GH+R A+IPLLDLAQRQ+GWLPISAMH VA+ L LP MRVYEVATFYTMF+RKP 
Sbjct: 61  SIYPEGHKRGALIPLLDLAQRQYGWLPISAMHKVAEILGLPNMRVYEVATFYTMFMRKPT 120

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------- 163
           G        +YH+  CTTTPCWLR SD IL   KK   + +                   
Sbjct: 121 G--------KYHIQVCTTTPCWLRGSDDILATCKKTLGIGVGETTKDMKFTISEVECLGA 172

Query: 164 --------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL  KDME+I+ D KA + P  GP         ++GRF  A E  
Sbjct: 173 CVNAPMIAINDDYYEDLTSKDMEEILADCKAERVPRAGP---------RNGRF--ASEPK 221

Query: 210 HDMTSLTGEPHGP 222
            + TSLT EP GP
Sbjct: 222 GNPTSLTEEPKGP 234


>gi|239789116|dbj|BAH71204.1| ACYPI002841 [Acyrthosiphon pisum]
          Length = 212

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 117/223 (52%), Positives = 142/223 (63%), Gaps = 50/223 (22%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           +F HRDTK+DNLD+KFEF+ +NKKR +AI++IYP GH+RAA+IPLLDLAQRQHGWLPISA
Sbjct: 1   MFNHRDTKEDNLDIKFEFSDENKKRIDAILAIYPEGHKRAAMIPLLDLAQRQHGWLPISA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           MH VAD L+LPKMRVYEVATFYTMF+RKP G        +YHL  CTTTPCWLR SD ++
Sbjct: 61  MHKVADVLDLPKMRVYEVATFYTMFMRKPTG--------KYHLQVCTTTPCWLRGSDDVI 112

Query: 151 EVIKKKCNMMLER-------------------------------QDLEPKDMEQIIDDLK 179
             +KKK ++ +                                 +DL  KD+E IIDDLK
Sbjct: 113 SCLKKKLDIGVGETSKDGQWTLSEVECLGACVNAPMMQVNDDYFEDLTTKDVESIIDDLK 172

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
            GK P PGP         +S R+  A E    +TSL  EP+GP
Sbjct: 173 NGKTPTPGP---------RSSRY--ASEPMDGLTSLKEEPYGP 204


>gi|242007620|ref|XP_002424632.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative [Pediculus
           humanus corporis]
 gi|212508098|gb|EEB11894.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative [Pediculus
           humanus corporis]
          Length = 242

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 130/253 (51%), Positives = 159/253 (62%), Gaps = 50/253 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           MLSN   L   V+R   RSL T+   + D LFVHRDT +DN DV F+FTP+N KRAEAI+
Sbjct: 1   MLSNFQMLGKYVMRLGTRSLQTSVSRHSDNLFVHRDTPEDNPDVNFDFTPENMKRAEAIM 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           +IYP GH+RAA++PLLDLAQRQHGWLPISAMH VA+ LNLPKMRVYEVATFYTM++RKP+
Sbjct: 61  AIYPEGHKRAALLPLLDLAQRQHGWLPISAMHKVAEILNLPKMRVYEVATFYTMYMRKPM 120

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------- 163
           G        +YH+  CTTTPCWLR+SD+I+ VIKKK N+ +                   
Sbjct: 121 G--------KYHIQVCTTTPCWLRDSDSIMNVIKKKLNINVGETTKDKLFTLSEVECLGA 172

Query: 164 --------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL  + M QI++DL  G+KP  GP         QSGR C   E +
Sbjct: 173 CVNAPMVQINDDYYEDLTEESMNQILEDLANGRKPKAGP---------QSGR-CSC-EPH 221

Query: 210 HDMTSLTGEPHGP 222
             +TSLT EP GP
Sbjct: 222 GGLTSLTTEPPGP 234


>gi|170068588|ref|XP_001868925.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Culex
           quinquefasciatus]
 gi|167864588|gb|EDS27971.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Culex
           quinquefasciatus]
          Length = 241

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 147/253 (58%), Gaps = 51/253 (20%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML++   L  + +R N R + +T     D LFVHRDT +DN  + FEFT +NKKR  AI+
Sbjct: 1   MLASSKVLLQSTLR-NFRGICSTSIRMSDNLFVHRDTPEDNPSIPFEFTEENKKRVSAIL 59

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           +IYP GH+R A+IPLLDLAQRQHGWLPISAMH VAD L LP MRVYEVATFYTMF+RKP 
Sbjct: 60  NIYPEGHKRGAMIPLLDLAQRQHGWLPISAMHKVADILGLPNMRVYEVATFYTMFMRKPT 119

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------- 163
           G         YH+  CTTTPCWLR SD ++ V KKK  +                     
Sbjct: 120 G--------TYHIQVCTTTPCWLRGSDEVMNVCKKKLGISPGETTKDGKFTISEVECLGA 171

Query: 164 --------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL  KD E+I+DDLK GK P PGP         ++GRF  A E  
Sbjct: 172 CVNAPMVAVNDDYYEDLTAKDTEEILDDLKQGKVPRPGP---------RNGRF--ASEPA 220

Query: 210 HDMTSLTGEPHGP 222
             +TSLT +P GP
Sbjct: 221 GGLTSLTEDPKGP 233


>gi|347967303|ref|XP_308018.4| AGAP002170-PA [Anopheles gambiae str. PEST]
 gi|333466358|gb|EAA03768.4| AGAP002170-PA [Anopheles gambiae str. PEST]
          Length = 239

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 119/250 (47%), Positives = 149/250 (59%), Gaps = 51/250 (20%)

Query: 5   LAKLASNVVRQNV-RSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIY 63
           + +L +N +R    R LST+     D LFVHRDT +DN  + FEFT DN+KRAEAI++IY
Sbjct: 1   MLRLFANTMRLGATRPLSTSAVKMSDNLFVHRDTPEDNASIPFEFTADNQKRAEAILNIY 60

Query: 64  PVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEE 123
           P GH+R A+IPLLDLAQRQHGWLP+SAMH VAD L LP MRVYEVATFYTMF+RKP G  
Sbjct: 61  PEGHKRGAMIPLLDLAQRQHGWLPLSAMHKVADILGLPHMRVYEVATFYTMFMRKPTG-- 118

Query: 124 RIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER-------------------- 163
                 +YH+  CTTTPCWLR SD +L+V KK   + +                      
Sbjct: 119 ------KYHIQVCTTTPCWLRGSDEVLDVCKKNLGIGVGETTKDGKFTISEVECLGACVN 172

Query: 164 -----------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDM 212
                      +DL   D E+I++ LK G++P PGP         ++GR+  A E    +
Sbjct: 173 APMLAVNDDYYEDLSVADTEEILNSLKQGQQPRPGP---------RNGRY--ASEPVGQL 221

Query: 213 TSLTGEPHGP 222
           TSLT EP GP
Sbjct: 222 TSLTEEPKGP 231


>gi|241830528|ref|XP_002414815.1| NADH-ubiquinone dehydrogenase, putative [Ixodes scapularis]
 gi|215509027|gb|EEC18480.1| NADH-ubiquinone dehydrogenase, putative [Ixodes scapularis]
          Length = 244

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 117/237 (49%), Positives = 148/237 (62%), Gaps = 52/237 (21%)

Query: 18  RSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLD 77
           R+L T+  L  DALFVHRDT  +N +VKFEFTP+N KRAE++ SIYP GH  AAVIPLLD
Sbjct: 20  RALGTSTSLRSDALFVHRDTDQNNANVKFEFTPENLKRAESLTSIYPDGHRAAAVIPLLD 79

Query: 78  LAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCT 137
           LAQRQHGWLP++AMHYVAD+L +P+MRVYEVATFYTMF R P+G        +YH+  CT
Sbjct: 80  LAQRQHGWLPLTAMHYVADYLGMPRMRVYEVATFYTMFQRNPVG--------KYHVQVCT 131

Query: 138 TTPCWLRNSDAILEVIKKKCNM--------------------------MLE-----RQDL 166
           TTPC LR ++ I  VI+KK  +                          M++      +DL
Sbjct: 132 TTPCMLRGAEDIQAVIEKKLGIGPGETSKDGLFTLSVVECLGACVNAPMVQVNDDYYEDL 191

Query: 167 EPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRF-CQAREAYHDMTSLTGEPHGP 222
           E KD+E+I+D LK GK+P PGP         ++GR  C+ +     +TSLT  P GP
Sbjct: 192 EAKDVEEILDSLKQGKRPKPGP---------RNGRLSCEPKGG---LTSLTSPPKGP 236


>gi|195448132|ref|XP_002071524.1| GK25091 [Drosophila willistoni]
 gi|194167609|gb|EDW82510.1| GK25091 [Drosophila willistoni]
          Length = 242

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 121/253 (47%), Positives = 149/253 (58%), Gaps = 50/253 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML+  A      V   +R+++T+     D LFVHRDT +DN ++ FEFT +NKKR EAI+
Sbjct: 1   MLAKCATRTLANVYGGLRAIATSSVQRSDNLFVHRDTPEDNPNIPFEFTAENKKRVEAIL 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           SIYP GH+R A+IPLLDLAQRQ+GWLPISAMH VA+ L+LP MRVYEVATFYTMF+RKP 
Sbjct: 61  SIYPEGHKRGAMIPLLDLAQRQYGWLPISAMHKVAEILDLPNMRVYEVATFYTMFMRKPT 120

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLE------------------ 162
           G        +YH+  CTTTPCWLR SD ILE  KK+  + +                   
Sbjct: 121 G--------KYHIQVCTTTPCWLRGSDEILETCKKQLGIGVGDTTKDKKFTISEVECLGA 172

Query: 163 -------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL  KDM+ I+ DLKA K   PGP         ++GRF  A E  
Sbjct: 173 CVNAPMVAVNDDYYEDLTAKDMQDILSDLKADKISPPGP---------RNGRF--ASEPA 221

Query: 210 HDMTSLTGEPHGP 222
            + TSLT EP GP
Sbjct: 222 GNATSLTEEPKGP 234


>gi|442755585|gb|JAA69952.1| Putative nadh:ubiquinone oxidoreductase ndufv2/24 kd subunit
           [Ixodes ricinus]
          Length = 244

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 116/236 (49%), Positives = 146/236 (61%), Gaps = 50/236 (21%)

Query: 18  RSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLD 77
           R+L  +  L  DALFVHRDT  +N +VKFEFTP+N KRAE++ SIYP GH  AAVIPLLD
Sbjct: 20  RALGPSTSLRSDALFVHRDTDQNNANVKFEFTPENLKRAESLTSIYPDGHRSAAVIPLLD 79

Query: 78  LAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCT 137
           LAQRQHGWLP++AMHYVAD+L +P+MRVYEVATFYTMF R P+G        +YH+  CT
Sbjct: 80  LAQRQHGWLPLTAMHYVADYLGMPRMRVYEVATFYTMFQRNPVG--------KYHVQVCT 131

Query: 138 TTPCWLRNSDAILEVIKKKCNM--------------------------MLE-----RQDL 166
           TTPC LR ++ I  VI+KK  +                          M++      +DL
Sbjct: 132 TTPCMLRGAEDIQAVIEKKLGIGPGETSKDGLFTLSVVECLGACVNAPMIQVNDDYYEDL 191

Query: 167 EPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           E KD+E+I+D LK GK+P PGP         ++GR   + E    +TSLT  P GP
Sbjct: 192 EAKDVEEILDSLKQGKRPKPGP---------RNGRL--SCEPKGGLTSLTSPPKGP 236


>gi|195165330|ref|XP_002023492.1| GL20163 [Drosophila persimilis]
 gi|194105597|gb|EDW27640.1| GL20163 [Drosophila persimilis]
          Length = 264

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 119/250 (47%), Positives = 147/250 (58%), Gaps = 50/250 (20%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML++ A      VR  +R+++T+     D LFVHRDT +DN ++ FEFT +NKKR EAI+
Sbjct: 1   MLTSCASKTLAAVRGGMRAIATSGVQRSDNLFVHRDTPEDNPNIPFEFTAENKKRVEAIM 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           SIYP GH+R A+IPLLDLAQRQ+GWLP+SAMH VA+ L LP MRVYEVATFYTMF+RKP 
Sbjct: 61  SIYPEGHKRGAMIPLLDLAQRQYGWLPLSAMHKVAEILELPNMRVYEVATFYTMFLRKPT 120

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------- 163
           G        +YH+  CTTTPCWLR SD ILE  KK+  + +                   
Sbjct: 121 G--------KYHIQVCTTTPCWLRGSDEILETCKKQLGIGIGEISKDKKFTISEVECLGA 172

Query: 164 --------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL  KDM+ I+ DLKA K   PGP         ++GRF  A E  
Sbjct: 173 CVNAPMVAVNDDYYEDLTAKDMQDILRDLKADKISPPGP---------RNGRF--ASEPK 221

Query: 210 HDMTSLTGEP 219
              TSLT EP
Sbjct: 222 GKPTSLTEEP 231


>gi|198468710|ref|XP_001354798.2| GA19069 [Drosophila pseudoobscura pseudoobscura]
 gi|198146535|gb|EAL31853.2| GA19069 [Drosophila pseudoobscura pseudoobscura]
          Length = 264

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 119/250 (47%), Positives = 147/250 (58%), Gaps = 50/250 (20%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML++ A      VR  +R+++T+     D LFVHRDT +DN ++ FEFT +NKKR EAI+
Sbjct: 1   MLTSCASKTLAAVRGGMRAIATSGVQRSDNLFVHRDTPEDNPNIPFEFTAENKKRVEAIM 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           SIYP GH+R A+IPLLDLAQRQ+GWLP+SAMH VA+ L LP MRVYEVATFYTMF+RKP 
Sbjct: 61  SIYPEGHKRGAMIPLLDLAQRQYGWLPLSAMHKVAEILELPNMRVYEVATFYTMFLRKPT 120

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------- 163
           G        +YH+  CTTTPCWLR SD ILE  KK+  + +                   
Sbjct: 121 G--------KYHIQVCTTTPCWLRGSDEILETCKKQLGIGIGEISKDKKFTISEVECLGA 172

Query: 164 --------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL  KDM+ I+ DLKA K   PGP         ++GRF  A E  
Sbjct: 173 CVNAPMVAVNDDYYEDLTAKDMQDILRDLKADKISPPGP---------RNGRF--ASEPK 221

Query: 210 HDMTSLTGEP 219
              TSLT EP
Sbjct: 222 GKPTSLTEEP 231


>gi|157110246|ref|XP_001651019.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Aedes aegypti]
 gi|94468524|gb|ABF18111.1| NADH:ubiquinone oxidoreductase NDUFV2/24 kDa subunit [Aedes
           aegypti]
 gi|108878788|gb|EAT43013.1| AAEL005508-PA [Aedes aegypti]
          Length = 240

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 120/253 (47%), Positives = 145/253 (57%), Gaps = 52/253 (20%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML+N  K+   V  + +R +S++     D LFVHRDT +DN  + FEFT +NKKR  AI+
Sbjct: 1   MLTNSFKIIPKV--RLLRGISSSAARCSDNLFVHRDTAEDNPSIPFEFTEENKKRVNAIL 58

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           +IYP GH+R A+IPLLDLAQRQHGWLPISAMH VAD L LP MRVYEVATFYTMF+RKP 
Sbjct: 59  NIYPEGHKRGAMIPLLDLAQRQHGWLPISAMHRVADILGLPNMRVYEVATFYTMFMRKPT 118

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------- 163
           G         YH+  CTTTPCWLR SD I+   K+K  +                     
Sbjct: 119 G--------TYHVQVCTTTPCWLRGSDEIMTACKEKLGIGAGETTKDGKFTISEVECLGA 170

Query: 164 --------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL  KD  +I+ DLK GK P PGP         ++GRF  A E  
Sbjct: 171 CVNAPMIAVNDDYYEDLTAKDTIEILSDLKQGKVPRPGP---------RNGRF--ASEPT 219

Query: 210 HDMTSLTGEPHGP 222
             +TSLT EP GP
Sbjct: 220 GGLTSLTEEPKGP 232


>gi|357606738|gb|EHJ65190.1| NADH-ubiquinone reductase [Danaus plexippus]
          Length = 243

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 115/234 (49%), Positives = 149/234 (63%), Gaps = 49/234 (20%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           MLS+L      + R + RSL TT +L HD+LFVHRD+ +DN  + FEFTP+N+KRA+A++
Sbjct: 1   MLSSLRSGVKGLWRTSARSLQTTAKLQHDSLFVHRDSPEDNPSIPFEFTPENQKRADALL 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
            IYP GH+RAA+IPLLDLAQRQ+ GWLPISAMH VA+ LNLP+MRVYEVATFYTMFIR+P
Sbjct: 61  EIYPEGHKRAAMIPLLDLAQRQNGGWLPISAMHKVAELLNLPRMRVYEVATFYTMFIRRP 120

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--CNM------------------ 159
           IG        +YH+  CTTTPCWLR SD +L  IK+   C +                  
Sbjct: 121 IG--------KYHIQVCTTTPCWLRGSDTVLNAIKEATGCEVGGNSPCGKFSISEVECLG 172

Query: 160 ------MLE-----RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRF 202
                 M++      +DL  +D ++II+ LK  +KP PGP         +SGR+
Sbjct: 173 ACVNAPMIQVNDDYYEDLTVEDSKEIINKLKKDEKPKPGP---------RSGRY 217


>gi|449275627|gb|EMC84418.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial,
           partial [Columba livia]
          Length = 231

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 119/243 (48%), Positives = 149/243 (61%), Gaps = 53/243 (21%)

Query: 13  VRQNVRSLSTTQRLNHD--ALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERA 70
           +RQ +RSL  T   N    ALFVHRD+ ++N D  FEFTP+N+KR EAI++ YP GH+ A
Sbjct: 1   IRQ-IRSLHRTAVCNSSGGALFVHRDSPENNPDTPFEFTPENQKRIEAIVNSYPGGHKSA 59

Query: 71  AVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQ 130
           AV+ +LDLAQRQHGWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +
Sbjct: 60  AVMAVLDLAQRQHGWLPISAMNKVAEILEMPPMRVYEVATFYTMYNRKPVG--------K 111

Query: 131 YHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER--------------------------- 163
           YH+  CTTTPC LR+SD+ILE IKKK  + +                             
Sbjct: 112 YHIQVCTTTPCMLRDSDSILEAIKKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIN 171

Query: 164 ----QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEP 219
               +DL PKD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P
Sbjct: 172 DNYYEDLTPKDIEEIIDELKAGKVPKPGP---------RSGRF--SCEPAGGLTSLTEPP 220

Query: 220 HGP 222
            GP
Sbjct: 221 KGP 223


>gi|225707972|gb|ACO09832.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Osmerus
           mordax]
          Length = 244

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 120/259 (46%), Positives = 152/259 (58%), Gaps = 51/259 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSL-STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAI 59
            LS+  + A +   + VRSL  +  R     +FVHRDT D+N D  FEFT +NKKR EAI
Sbjct: 2   FLSSAIRSAVSQTARQVRSLHRSAARAGAGGIFVHRDTPDNNPDTPFEFTDENKKRIEAI 61

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           IS+YP GH++AA IP+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTMF+R+P
Sbjct: 62  ISMYPEGHKQAATIPVLDLAQRQNGWLPISAMNKVAEVLEVPPMRVYEVATFYTMFLRQP 121

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER---------------- 163
           +G        +YH+  CTTTPC L NSD+ILE IK K  + +                  
Sbjct: 122 VG--------KYHIQICTTTPCMLCNSDSILEAIKNKLGIKVGETTPDKMFSLIEVECLG 173

Query: 164 ---------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREA 208
                          +DL PKD+E+IID+LKAG  PAPGP         ++GRF  + E 
Sbjct: 174 ACVNAPMVQINDNYYEDLSPKDIEEIIDELKAGTIPAPGP---------RNGRF--SCEP 222

Query: 209 YHDMTSLTGEPHGPWDSKR 227
              +T LT  P GP    R
Sbjct: 223 AGGLTCLTEPPPGPGFGVR 241


>gi|41152189|ref|NP_957041.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           [Danio rerio]
 gi|37747980|gb|AAH59546.1| Zgc:73198 [Danio rerio]
          Length = 244

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 118/259 (45%), Positives = 151/259 (58%), Gaps = 51/259 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSL-STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAI 59
            LS+  + A +   + VRSL  T+ R     +FVHRDT ++N D  FEFTP+N KR EAI
Sbjct: 2   FLSSTLRSAVSYTARQVRSLHQTSARAGAGGIFVHRDTPENNPDTPFEFTPENMKRVEAI 61

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           I+ YP GH+ AA IP+LDLAQRQ+GWLPISAM+ VA+ L +  MRVYEVATFYTMF+R+P
Sbjct: 62  INNYPEGHKAAATIPVLDLAQRQNGWLPISAMNKVAEVLGIAPMRVYEVATFYTMFLRQP 121

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER---------------- 163
           +G        +YH+  CTTTPC L +SD+ILE I+ K  + +                  
Sbjct: 122 VG--------KYHIQICTTTPCMLCDSDSILEAIQNKLGIKVGETTADKLFTLTEVECLG 173

Query: 164 ---------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREA 208
                          +DL+P DMEQIID+LKAG+ P PGP         +SGRF  + E 
Sbjct: 174 ACVNAPMVQINDNYYEDLKPSDMEQIIDELKAGRVPPPGP---------RSGRF--SCEP 222

Query: 209 YHDMTSLTGEPHGPWDSKR 227
              +TSLT  P GP    R
Sbjct: 223 AGGLTSLTEPPPGPGVGVR 241


>gi|348557392|ref|XP_003464503.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Cavia porcellus]
          Length = 248

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 117/241 (48%), Positives = 146/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTT--QRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           + +R+L  T  Q     ALFVHRDT ++N D  F+FTP+N KR EAII  YP GH+ AAV
Sbjct: 19  RQIRNLHKTAVQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIIKNYPEGHKAAAV 78

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 79  LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 130

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LR+SD+ILE I+KK  + +                               
Sbjct: 131 IQVCTTTPCMLRDSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 190

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL PKD+E+IID+LKAGK P PGP         +SGRFC   E    +TSLT  P G
Sbjct: 191 YYEDLTPKDIEEIIDELKAGKIPKPGP---------RSGRFCC--EPAGGLTSLTTPPKG 239

Query: 222 P 222
           P
Sbjct: 240 P 240


>gi|410923781|ref|XP_003975360.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Takifugu rubripes]
          Length = 244

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 118/259 (45%), Positives = 154/259 (59%), Gaps = 51/259 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSL-STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAI 59
            LS   + A +   + VRSL  +  R     +FVHRDT D+N +  FEFT +NKKR EAI
Sbjct: 2   FLSAAVRSALSQTARQVRSLHRSAVRAGAGGIFVHRDTADNNPETPFEFTEENKKRIEAI 61

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           +S+YPVGH++AA IP+LD+AQRQHGWLP+SAM+ VA+ L +P MRVYEVATFYTMF+R+P
Sbjct: 62  VSMYPVGHKQAATIPVLDVAQRQHGWLPLSAMNKVAEVLEIPPMRVYEVATFYTMFLRQP 121

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM------------MLE----- 162
           +G        +Y +  CTTTPC L NSD+ILE I+ K  +            +LE     
Sbjct: 122 VG--------KYFIQICTTTPCMLCNSDSILEAIQNKLGIKVGETTPDKLFTLLEVECLG 173

Query: 163 --------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREA 208
                          +DL PKD+E+IID+LKAG+ P PGP         ++GRF  + E 
Sbjct: 174 ACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGRVPPPGP---------RNGRF--SCEP 222

Query: 209 YHDMTSLTGEPHGPWDSKR 227
              +TSLT  P GP    R
Sbjct: 223 AGGLTSLTEPPKGPGFGVR 241


>gi|62857879|ref|NP_001017166.1| NADH dehydrogenase ubiquinone flavoprotein 2 [Xenopus (Silurana)
           tropicalis]
 gi|89272040|emb|CAJ83184.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Xenopus (Silurana)
           tropicalis]
 gi|134025998|gb|AAI35379.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Xenopus
           (Silurana) tropicalis]
          Length = 243

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 121/255 (47%), Positives = 147/255 (57%), Gaps = 52/255 (20%)

Query: 6   AKLASNVVRQNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIY 63
           A+L + ++    R L TT   N    A FVHRDT ++N D  FEFT +N KR EAII  Y
Sbjct: 5   ARLRNGLLSSVRRYLHTTTAYNGAGGASFVHRDTPENNPDTPFEFTSENYKRIEAIIGNY 64

Query: 64  PVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEE 123
           P GH+  AVIP+LDLAQRQHGWLPISAM+ VA+ L +P MRVYEVATFYTMF RKP+G  
Sbjct: 65  PEGHKAGAVIPVLDLAQRQHGWLPISAMNKVAEVLEMPAMRVYEVATFYTMFNRKPVG-- 122

Query: 124 RIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER-------------------- 163
                 +YH+  CTTTPC L NSD+ILE I+KK  + +                      
Sbjct: 123 ------KYHVQICTTTPCMLCNSDSILEAIEKKLGIHVGETTSDKLFTLTEVECLGACVN 176

Query: 164 -----------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDM 212
                      +DL PKD+E IID+LKAGK P PGP         ++GRF  + E    +
Sbjct: 177 APMVQINDNYYEDLTPKDIENIIDELKAGKVPTPGP---------RNGRF--SCEPAGGL 225

Query: 213 TSLTGEPHGPWDSKR 227
           TSLTG P GP    R
Sbjct: 226 TSLTGPPKGPGFGVR 240


>gi|332225897|ref|XP_003262121.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial [Nomascus leucogenys]
          Length = 249

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 118/241 (48%), Positives = 147/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           ++VRSL  T   N    ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 20  RHVRSLHKTAMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 80  LPILDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 131

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 132 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL PKD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 192 YYEDLTPKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240

Query: 222 P 222
           P
Sbjct: 241 P 241


>gi|350535893|ref|NP_001232451.1| putative NADH dehydrogenase flavoprotein 2 [Taeniopygia guttata]
 gi|197128368|gb|ACH44866.1| putative NADH dehydrogenase flavoprotein 2 [Taeniopygia guttata]
          Length = 244

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/239 (48%), Positives = 143/239 (59%), Gaps = 50/239 (20%)

Query: 21  STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQ 80
            T +R    ALFVHRD+ ++N D  FEFTP+N KR EAII+ YP GH+ AAV+ +LDLAQ
Sbjct: 23  GTAERNATGALFVHRDSPENNPDTPFEFTPENLKRIEAIINNYPEGHKSAAVMAVLDLAQ 82

Query: 81  RQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTP 140
           RQHGWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH+  CTTTP
Sbjct: 83  RQHGWLPISAMNKVAEVLEMPPMRVYEVATFYTMYNRKPVG--------KYHIQVCTTTP 134

Query: 141 CWLRNSDAILEVIKKKCNMMLER-------------------------------QDLEPK 169
           C LR+SD+ILE IKKK  + +                                 +DL PK
Sbjct: 135 CMLRDSDSILEAIKKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPK 194

Query: 170 DMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPWDSKRD 228
           D+E IID+LKAGK P PGP         +SGRF  + E    +TSLT  P GP    RD
Sbjct: 195 DIEDIIDELKAGKVPKPGP---------RSGRF--SCEPAGGLTSLTEPPKGPGFGVRD 242


>gi|296222243|ref|XP_002757104.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial [Callithrix jacchus]
          Length = 249

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/241 (48%), Positives = 147/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSL--STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           ++VR L  + TQ     ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 20  RHVRKLHKTATQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 80  LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 131

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 132 IQICTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL PKD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 192 YYEDLTPKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240

Query: 222 P 222
           P
Sbjct: 241 P 241


>gi|363730685|ref|XP_424129.3| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial isoform 2 [Gallus gallus]
          Length = 245

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 120/243 (49%), Positives = 147/243 (60%), Gaps = 53/243 (21%)

Query: 13  VRQNVRSLSTTQRLNHD--ALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERA 70
           VRQ +R L  T   +    ALFVHRD+ ++N D  FEFTP+NKKR EAIIS YP GH+ A
Sbjct: 15  VRQ-IRYLHKTPACSSSGGALFVHRDSPENNPDTPFEFTPENKKRIEAIISNYPGGHKSA 73

Query: 71  AVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQ 130
           AV+ +LDLAQRQHGWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +
Sbjct: 74  AVMAVLDLAQRQHGWLPISAMNKVAEILEMPPMRVYEVATFYTMYNRKPVG--------K 125

Query: 131 YHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER--------------------------- 163
           YH+  CTTTPC LR+SD+ILE I+KK  + +                             
Sbjct: 126 YHIQVCTTTPCMLRDSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIN 185

Query: 164 ----QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEP 219
               +DL PKD+E IID+LKAGK P PGP         +SGRF  + E    +TSLT  P
Sbjct: 186 DNYYEDLTPKDIEDIIDELKAGKVPKPGP---------RSGRF--SCEPAGGLTSLTEPP 234

Query: 220 HGP 222
            GP
Sbjct: 235 KGP 237


>gi|164612465|gb|ABY63629.1| NADH dehydrogenase flavoprotein 2, 24kDa (predicted) [Papio anubis]
          Length = 451

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/241 (48%), Positives = 147/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           ++VR+L  T   N    ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 186 RHVRNLHKTAMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 245

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 246 LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 297

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 298 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 357

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL PKD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 358 YYEDLTPKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 406

Query: 222 P 222
           P
Sbjct: 407 P 407


>gi|326917467|ref|XP_003205020.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Meleagris gallopavo]
          Length = 243

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 114/224 (50%), Positives = 138/224 (61%), Gaps = 50/224 (22%)

Query: 30  ALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPIS 89
           ALFVHRD+ ++N D  FEFTP+NKKR EAII  YP GH+ AAV+ +LDLAQRQHGWLPIS
Sbjct: 31  ALFVHRDSPENNPDTPFEFTPENKKRIEAIIGNYPGGHKSAAVMAVLDLAQRQHGWLPIS 90

Query: 90  AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           AM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH+  CTTTPC LR+SD+I
Sbjct: 91  AMNKVAEILEMPPMRVYEVATFYTMYNRKPVG--------KYHIQVCTTTPCMLRDSDSI 142

Query: 150 LEVIKKKCNMMLER-------------------------------QDLEPKDMEQIIDDL 178
           LE IKKK  + +                                 +DL PKD+E IID+L
Sbjct: 143 LEAIKKKLGIEVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDEL 202

Query: 179 KAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           KAGK P PGP         +SGRF  + E    +TSLT  P GP
Sbjct: 203 KAGKVPKPGP---------RSGRF--SCEPAGGLTSLTEPPKGP 235


>gi|431896334|gb|ELK05750.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           [Pteropus alecto]
          Length = 329

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 116/241 (48%), Positives = 147/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTT--QRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           +++R+L  T  Q     ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 100 RHIRNLHKTAVQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 159

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 160 LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 211

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 212 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 271

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL PKD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 272 YYEDLTPKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 320

Query: 222 P 222
           P
Sbjct: 321 P 321


>gi|290562774|gb|ADD38782.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Lepeophtheirus
           salmonis]
          Length = 240

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 112/237 (47%), Positives = 147/237 (62%), Gaps = 51/237 (21%)

Query: 18  RSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLD 77
           R +S +  L+HDA+FVHRD+ ++N ++ FEF  DNKKRA AI+SIYP GH++AA +PLLD
Sbjct: 15  RFISGSNVLSHDAIFVHRDSPENNENIPFEFNADNKKRAGAIMSIYPEGHKKAATLPLLD 74

Query: 78  LAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWC 136
           LAQRQ+ GWLPISAM+YVADF+++P+MRVYEVATFYTMFIR P+G        +YH+  C
Sbjct: 75  LAQRQNGGWLPISAMNYVADFIDMPRMRVYEVATFYTMFIRNPVG--------KYHVQVC 126

Query: 137 TTTPCWLRNSDAILEVIKKKCNMMLER-------------------------------QD 165
           TTTPCWLR SD IL+  K    + + +                               +D
Sbjct: 127 TTTPCWLRGSDEILKACKDNLGVPVGKMTQDKLFTISEVECLGACVNAPMVQINDDYYED 186

Query: 166 LEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           L  KDM++I+++LK G KPA GP         +S R+  A E +   TSLT  P GP
Sbjct: 187 LTVKDMDEILNELKVGTKPARGP---------RSSRY--AAEPFGGPTSLTEPPPGP 232


>gi|47223039|emb|CAG07126.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 244

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 114/259 (44%), Positives = 149/259 (57%), Gaps = 54/259 (20%)

Query: 5   LAKLASNVVRQNVRSL----STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           L+    +VV Q  R +     +  R     +FVHRDT ++N +  FEFT +NKKR EAII
Sbjct: 3   LSAAVRSVVSQTARRVRNVHGSAVRAGAGGIFVHRDTAENNPETPFEFTEENKKRIEAII 62

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           S+YPVGH++AA IP+LD+AQRQHGWLP+SAM+ VA+ L +P MRVYEVATFYTMF+R+P+
Sbjct: 63  SMYPVGHKQAATIPVLDVAQRQHGWLPLSAMNKVAEVLEIPPMRVYEVATFYTMFLRQPV 122

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------- 163
           G        +Y +  CTTTPC L NSD+ILE ++ K  + +                   
Sbjct: 123 G--------KYFIQICTTTPCMLCNSDSILEALQNKLGIKVGETTPDKMFTLIEVECLGA 174

Query: 164 --------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL PKD+E+IID+LKAG+ P PGP G         GRF  + E  
Sbjct: 175 CVNAPMVQINDNYYEDLTPKDIEEIIDELKAGRVPPPGPRG---------GRF--SCEPA 223

Query: 210 HDMTSLTGEPHGPWDSKRD 228
             +TSLT  P GP    R 
Sbjct: 224 GGLTSLTEPPKGPGFGVRS 242


>gi|73962198|ref|XP_537328.2| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial [Canis lupus familiaris]
          Length = 249

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 117/239 (48%), Positives = 145/239 (60%), Gaps = 52/239 (21%)

Query: 17  VRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIP 74
           +R+L  T   N    ALFVHRDT ++N D  F+FTP+N KR EAII  YP GH+ AAV+P
Sbjct: 22  IRNLHKTAVQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIIKNYPEGHKAAAVLP 81

Query: 75  LLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLN 134
           +LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH+ 
Sbjct: 82  VLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYHIQ 133

Query: 135 WCTTTPCWLRNSDAILEVIKKKCNMMLER------------------------------- 163
            CTTTPC LRNSD+ILE I+KK  + +                                 
Sbjct: 134 VCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYY 193

Query: 164 QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           +DL PKD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P GP
Sbjct: 194 EDLTPKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKGP 241


>gi|410977352|ref|XP_003995070.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial [Felis catus]
          Length = 249

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 116/241 (48%), Positives = 147/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTT--QRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           +++R+L  T  Q     ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 20  RHIRNLHKTAVQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVGNYPEGHKAAAV 79

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 80  LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 131

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 132 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL PKD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 192 YYEDLTPKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240

Query: 222 P 222
           P
Sbjct: 241 P 241


>gi|432103532|gb|ELK30636.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           [Myotis davidii]
          Length = 249

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 116/241 (48%), Positives = 147/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTT--QRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           +++R+L  T  Q     ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 20  RHIRNLHKTAVQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 80  LPVLDLAQRQNGWLPISAMNKVAEVLEVPPMRVYEVATFYTMYNRKPVG--------KYH 131

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 132 IQICTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL PKD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 192 YYEDLTPKDIEEIIDELKAGKMPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240

Query: 222 P 222
           P
Sbjct: 241 P 241


>gi|383872288|ref|NP_001244514.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Macaca
           mulatta]
 gi|402857324|ref|XP_003893213.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Papio anubis]
 gi|402902655|ref|XP_003914214.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial [Papio anubis]
 gi|355754895|gb|EHH58762.1| hypothetical protein EGM_08691 [Macaca fascicularis]
 gi|380787453|gb|AFE65602.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           precursor [Macaca mulatta]
 gi|383414789|gb|AFH30608.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           precursor [Macaca mulatta]
 gi|384940228|gb|AFI33719.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           precursor [Macaca mulatta]
          Length = 249

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 117/241 (48%), Positives = 147/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           ++VR+L  T   N    ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 20  RHVRNLHKTAMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 80  LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 131

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 132 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL PKD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 192 YYEDLTPKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240

Query: 222 P 222
           P
Sbjct: 241 P 241


>gi|417397841|gb|JAA45954.1| Putative nadh:ubiquinone oxidoreductase ndufv2/24 kd subunit
           [Desmodus rotundus]
          Length = 249

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 113/233 (48%), Positives = 141/233 (60%), Gaps = 50/233 (21%)

Query: 21  STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQ 80
           +  Q     ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV+P+LDLAQ
Sbjct: 28  TAVQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQ 87

Query: 81  RQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTP 140
           RQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH+  CTTTP
Sbjct: 88  RQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYHIQVCTTTP 139

Query: 141 CWLRNSDAILEVIKKKCNMMLER-------------------------------QDLEPK 169
           C LRNSD+ILE I+KK  + +                                 +DL PK
Sbjct: 140 CMLRNSDSILEAIQKKLGIKVGETTPDKLFTVIEVECLGACVNAPMVQINDNYYEDLTPK 199

Query: 170 DMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           D+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P GP
Sbjct: 200 DIEEIIDELKAGKTPKPGP---------RSGRF--SCEPAGGLTSLTEPPKGP 241


>gi|432911401|ref|XP_004078661.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Oryzias latipes]
          Length = 244

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 115/250 (46%), Positives = 143/250 (57%), Gaps = 50/250 (20%)

Query: 10  SNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHER 69
           S   RQ  R   +  R     +FVHRDT ++N D  FEFT  NKKR EAI+S+YP GH++
Sbjct: 12  SQAARQVRRLHRSAARAGAGGIFVHRDTPENNPDTPFEFTEQNKKRIEAILSMYPEGHKQ 71

Query: 70  AAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSIL 129
           AA IP+LDLAQRQHGWLPISAM+ VA+ L +  MRVYEVATFYTMF+R+P+G        
Sbjct: 72  AATIPVLDLAQRQHGWLPISAMNKVAEVLGVAPMRVYEVATFYTMFLRQPVG-------- 123

Query: 130 QYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER-------------------------- 163
           +Y +  CTTTPC L NSD+ILE I+ K  + +                            
Sbjct: 124 KYFIQICTTTPCMLCNSDSILEAIQNKLGIKVGETTPDKMFTLIEVECLGACVNAPMVQI 183

Query: 164 -----QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGE 218
                +DL PKD+E IID+LKAG+ P PGP         +SGRF  + E    +TSLTG 
Sbjct: 184 NDNYYEDLAPKDIENIIDELKAGRIPPPGP---------RSGRF--SCEPAGGLTSLTGP 232

Query: 219 PHGPWDSKRD 228
           P GP    R 
Sbjct: 233 PTGPGFGVRS 242


>gi|348521986|ref|XP_003448507.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like isoform 1 [Oreochromis niloticus]
          Length = 241

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 116/250 (46%), Positives = 145/250 (58%), Gaps = 51/250 (20%)

Query: 5   LAKLASNVVRQNVRSL-STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIY 63
           L+    + V Q  RSL  +  R     +FVHRDT D+N D  FEFT +NKKR EAI S+Y
Sbjct: 3   LSAAVRSAVSQAARSLHQSAVRAGAGGIFVHRDTPDNNPDTPFEFTEENKKRIEAITSMY 62

Query: 64  PVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEE 123
           P GH++AA IP+LDLAQRQHGWLPISAM+ VA+ L +P MRVYEVATFYTMF+RKP+G  
Sbjct: 63  PEGHKQAATIPVLDLAQRQHGWLPISAMNKVAEVLEIPPMRVYEVATFYTMFLRKPVG-- 120

Query: 124 RIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER-------------------- 163
                 +Y +  CTTTPC L NSD+I+E I+ K  + +                      
Sbjct: 121 ------KYFIQVCTTTPCMLCNSDSIVEAIQNKLGIKVGETTPDKMFTVIEVECLGACVN 174

Query: 164 -----------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDM 212
                      +DL PKD+E IID+LKAG+ P PGP         +S RF  + E    +
Sbjct: 175 APMVQINDNYYEDLTPKDIEDIIDELKAGRVPPPGP---------RSSRF--SCEPAGGL 223

Query: 213 TSLTGEPHGP 222
           TSLT  P GP
Sbjct: 224 TSLTEPPKGP 233


>gi|321464432|gb|EFX75440.1| NADH:ubiquinone oxidoreductase NDUFV2/24 kDa subunit [Daphnia
           pulex]
          Length = 243

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 121/254 (47%), Positives = 149/254 (58%), Gaps = 51/254 (20%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           M+S+ A      +   VRS + +     D+LFVHRDT  +N DV F FT +N +RA AII
Sbjct: 1   MISSTANKIGRALSSQVRSFTVSSASLSDSLFVHRDTPKNNPDVPFAFTKENVERANAII 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           +IYP GH+RAAVIPLLDLAQRQ  GWLPISAMH VAD L++PKMRVYEVATFYTMF R P
Sbjct: 61  NIYPDGHKRAAVIPLLDLAQRQAGGWLPISAMHAVADMLSMPKMRVYEVATFYTMFNRNP 120

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM------------MLERQ--- 164
           IG        ++ +  CTTTPCWL  S+ I+  +KKK N+            +LE +   
Sbjct: 121 IG--------KHFVQVCTTTPCWLNGSEKIMNCLKKKLNLNNGETTPNGEFSLLEVECLG 172

Query: 165 ----------------DLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREA 208
                           DL  KD E+IIDDLKAG++P  GP         ++GRF  A E 
Sbjct: 173 ACVNAPMMQINDNFFEDLTEKDTEEIIDDLKAGREPKAGP---------RNGRF--AAEP 221

Query: 209 YHDMTSLTGEPHGP 222
              +TSLT  P GP
Sbjct: 222 RDGLTSLTEPPPGP 235


>gi|403265316|ref|XP_003924889.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial [Saimiri boliviensis boliviensis]
          Length = 253

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 117/241 (48%), Positives = 147/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           ++VR+L  T   N    ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 24  RHVRNLHKTAMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 83

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 84  LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 135

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 136 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 195

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL PKD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 196 YYEDLTPKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 244

Query: 222 P 222
           P
Sbjct: 245 P 245


>gi|301764419|ref|XP_002917633.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Ailuropoda melanoleuca]
          Length = 249

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 116/241 (48%), Positives = 147/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTT--QRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           +++R+L  T  Q     ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 20  RHIRNLHKTAVQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 80  LPVLDLAQRQNGWLPISAMNKVAEVLKVPPMRVYEVATFYTMYNRKPVG--------KYH 131

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 132 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL PKD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 192 YYEDLTPKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240

Query: 222 P 222
           P
Sbjct: 241 P 241


>gi|126321913|ref|XP_001370300.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Monodelphis domestica]
          Length = 239

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 117/250 (46%), Positives = 148/250 (59%), Gaps = 54/250 (21%)

Query: 8   LASNVVRQN--VRSLSTT--QRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIY 63
           +A+   RQ   +R L  T  Q     ALFVHRDT ++N D  F+FTP+N KR EAI+  Y
Sbjct: 1   MAAGATRQGRQMRGLHKTAVQSGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKSY 60

Query: 64  PVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEE 123
           P GH+ AAV+P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G  
Sbjct: 61  PEGHKAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-- 118

Query: 124 RIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER-------------------- 163
                 +YH+  CTTTPC LR+SD+ILE I+KK  + +                      
Sbjct: 119 ------KYHIQVCTTTPCMLRDSDSILEAIQKKLGIKVGETTSDKLFTLIEVECLGACVN 172

Query: 164 -----------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDM 212
                      +DL PKD+E+IID+LKAG  P PGP         +SGRF  + E    +
Sbjct: 173 APMVQINDNYYEDLTPKDIEEIIDELKAGNVPKPGP---------RSGRF--SCEPAGGL 221

Query: 213 TSLTGEPHGP 222
           TSLT  P GP
Sbjct: 222 TSLTEPPKGP 231


>gi|209732318|gb|ACI67028.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Salmo
           salar]
          Length = 244

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 118/259 (45%), Positives = 154/259 (59%), Gaps = 52/259 (20%)

Query: 1   MLSNLAKLASNVVRQNVRSL-STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAI 59
           + S +  + S   RQ VRSL  +  R     +FVHRDT D+N D  FEFT DN KR +AI
Sbjct: 3   LTSAIRSVVSQTSRQ-VRSLHQSAARAGAGGIFVHRDTPDNNPDTPFEFTVDNLKRIDAI 61

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           IS+YP GH++AA IP+LDLAQRQHGWLPISAM+ VA+ L +P MR+YEVATFYTMF+R+P
Sbjct: 62  ISMYPEGHKQAATIPVLDLAQRQHGWLPISAMNKVAEVLEVPPMRIYEVATFYTMFLRQP 121

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM------------MLE----- 162
           +G        +YH+  CTTTPC L +SD+ILE I+ K  +            ++E     
Sbjct: 122 VG--------KYHIQICTTTPCMLCDSDSILEAIQNKLGIKAGGMTADKMFSLIEVECLG 173

Query: 163 --------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREA 208
                          +DL PKD++QI+D+LKAGK P PGP         ++GRF  + E 
Sbjct: 174 ACVNAPMVQINDNYYEDLSPKDIDQILDELKAGKVPPPGP---------RNGRF--SCEP 222

Query: 209 YHDMTSLTGEPHGPWDSKR 227
              +TSL+  P GP    R
Sbjct: 223 AGGLTSLSEPPPGPGFGVR 241


>gi|440890385|gb|ELR44819.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial,
           partial [Bos grunniens mutus]
          Length = 231

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 115/241 (47%), Positives = 147/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTT--QRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           +++R+L  T  Q     ALFVHRDT ++N +  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 2   KHIRNLHKTAVQNGAGGALFVHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAV 61

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 62  LPVLDLAQRQNGWLPISAMNKVAEILQVPPMRVYEVATFYTMYNRKPVG--------KYH 113

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 114 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 173

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL PKD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 174 YYEDLTPKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 222

Query: 222 P 222
           P
Sbjct: 223 P 223


>gi|291394118|ref|XP_002713628.1| PREDICTED: NADH dehydrogenase ubiquinone flavoprotein 2
           [Oryctolagus cuniculus]
          Length = 249

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 116/241 (48%), Positives = 147/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTT--QRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           +++R+L  T  Q     ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 20  KHLRNLHKTAVQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 80  LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 131

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 132 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL PKD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 192 YYEDLTPKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240

Query: 222 P 222
           P
Sbjct: 241 P 241


>gi|225705108|gb|ACO08400.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Oncorhynchus mykiss]
          Length = 265

 Score =  206 bits (524), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 117/259 (45%), Positives = 154/259 (59%), Gaps = 52/259 (20%)

Query: 1   MLSNLAKLASNVVRQNVRSL-STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAI 59
           + S +  + S   RQ VRSL  +  R     +FVHRDT D+N D  FEFT DN KR +AI
Sbjct: 24  LTSAIRSVVSQTSRQ-VRSLHQSAARAGAGGIFVHRDTPDNNPDTPFEFTVDNLKRIDAI 82

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           IS+YP GH++AA IP+LDLAQRQHGWLPISAM+ VA+ L +P MR+YEVATFYTMF+R+P
Sbjct: 83  ISMYPEGHKQAATIPVLDLAQRQHGWLPISAMNKVAEVLEVPPMRIYEVATFYTMFLRQP 142

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM------------MLE----- 162
           +G        +YH+  CTTTPC L +SD+ILE ++ K  +            ++E     
Sbjct: 143 VG--------KYHIQICTTTPCMLCDSDSILEALQNKLGIKVGGMTADKMFSLIEVECLG 194

Query: 163 --------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREA 208
                          +DL PKD++QIID+LKAG+ P PGP         ++GRF  + E 
Sbjct: 195 ACVNAPMVQINDNYYEDLSPKDIDQIIDELKAGQVPPPGP---------RNGRF--SCEP 243

Query: 209 YHDMTSLTGEPHGPWDSKR 227
              +TSL+  P GP    R
Sbjct: 244 AGGLTSLSEPPPGPGFGVR 262


>gi|426254023|ref|XP_004020686.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial [Ovis aries]
          Length = 271

 Score =  206 bits (524), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 116/248 (46%), Positives = 148/248 (59%), Gaps = 52/248 (20%)

Query: 8   LASNVVRQNVRSLSTT--QRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPV 65
           L  +   +++R+L  T  Q     ALFVHRDT  +N +  F+FTP+N KR EAI+  YP 
Sbjct: 35  LKEDGTGKHIRNLHKTAVQNGAGGALFVHRDTPKNNPETPFDFTPENYKRIEAIVKNYPE 94

Query: 66  GHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERI 125
           GH+ AAV+P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G    
Sbjct: 95  GHKAAAVLPVLDLAQRQNGWLPISAMNKVAEILQVPPMRVYEVATFYTMYNRKPVG---- 150

Query: 126 KSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER---------------------- 163
               +YH+  CTTTPC LRNSD+ILE I+KK  + +                        
Sbjct: 151 ----KYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAP 206

Query: 164 ---------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTS 214
                    +DL PKD+E+IID+LKAGK P PGP         +SGRF  + E    +TS
Sbjct: 207 MVQINDNYYEDLTPKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTS 255

Query: 215 LTGEPHGP 222
           LT  P GP
Sbjct: 256 LTEPPKGP 263


>gi|348521988|ref|XP_003448508.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like isoform 2 [Oreochromis niloticus]
          Length = 244

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 116/254 (45%), Positives = 146/254 (57%), Gaps = 51/254 (20%)

Query: 1   MLSNLAKLASNVVRQNVRSL-STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAI 59
            LS   + A +   +  RSL  +  R     +FVHRDT D+N D  FEFT +NKKR EAI
Sbjct: 2   FLSAAVRSAVSQANREARSLHQSAVRAGAGGIFVHRDTPDNNPDTPFEFTEENKKRIEAI 61

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
            S+YP GH++AA IP+LDLAQRQHGWLPISAM+ VA+ L +P MRVYEVATFYTMF+RKP
Sbjct: 62  TSMYPEGHKQAATIPVLDLAQRQHGWLPISAMNKVAEVLEIPPMRVYEVATFYTMFLRKP 121

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER---------------- 163
           +G        +Y +  CTTTPC L NSD+I+E I+ K  + +                  
Sbjct: 122 VG--------KYFIQVCTTTPCMLCNSDSIVEAIQNKLGIKVGETTPDKMFTVIEVECLG 173

Query: 164 ---------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREA 208
                          +DL PKD+E IID+LKAG+ P PGP         +S RF  + E 
Sbjct: 174 ACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGRVPPPGP---------RSSRF--SCEP 222

Query: 209 YHDMTSLTGEPHGP 222
              +TSLT  P GP
Sbjct: 223 AGGLTSLTEPPKGP 236


>gi|148706375|gb|EDL38322.1| mCG9061, isoform CRA_c [Mus musculus]
          Length = 259

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 110/224 (49%), Positives = 139/224 (62%), Gaps = 50/224 (22%)

Query: 30  ALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPIS 89
           ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV+P+LDLAQRQ+GWLPIS
Sbjct: 47  ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPIS 106

Query: 90  AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           AM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH+  CTTTPC LR+SD+I
Sbjct: 107 AMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYHIQVCTTTPCMLRDSDSI 158

Query: 150 LEVIKKKCNMMLER-------------------------------QDLEPKDMEQIIDDL 178
           LE +++K  + +                                 +DL PKD+E+IID+L
Sbjct: 159 LETLQRKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDEL 218

Query: 179 KAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           KAGK P PGP         +SGRFC   E    +TSLT  P GP
Sbjct: 219 KAGKVPKPGP---------RSGRFCC--EPAGGLTSLTEPPKGP 251


>gi|443693866|gb|ELT95139.1| hypothetical protein CAPTEDRAFT_157629 [Capitella teleta]
          Length = 248

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 123/256 (48%), Positives = 154/256 (60%), Gaps = 50/256 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           MLS++ + A +  R  +RSL  T  +  D LFVHRD++ +N DV FEFTP+N +RA+AII
Sbjct: 1   MLSSVVRAAVSSCRGQIRSLHKTAAVASDHLFVHRDSQANNPDVAFEFTPENVERADAII 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
             YP GH+ AAVIPLLD+AQRQ+ GWLPISAMHYVA +L +PKMRVYEVATFYTMF R+P
Sbjct: 61  KNYPEGHQAAAVIPLLDIAQRQNQGWLPISAMHYVAKYLQMPKMRVYEVATFYTMFNREP 120

Query: 120 IGEERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKK----------KCNM--MLE--- 162
           IG        +Y +  CTTTPC L    SDAILE I K          K NM  ++E   
Sbjct: 121 IG--------KYFVQICTTTPCILGGCGSDAILEAITKNIGIKPGQTTKDNMFTLMEVEC 172

Query: 163 ----------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAR 206
                            +DL  +D+  I+DD+KAGK P  GP         Q+GRF  A 
Sbjct: 173 LGACVNAPMVQINDNYYEDLTVEDINGILDDIKAGKVPKAGPR------SGQNGRF--AS 224

Query: 207 EAYHDMTSLTGEPHGP 222
           E    +TSL+  P+GP
Sbjct: 225 EPKGGLTSLSTPPYGP 240


>gi|115392045|ref|NP_001065254.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           precursor [Pan troglodytes]
 gi|115502497|sp|Q0MQI9.1|NDUV2_PANTR RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial; AltName: Full=NADH-ubiquinone
           oxidoreductase 24 kDa subunit; Flags: Precursor
 gi|111661780|gb|ABH12154.1| mitochondrial complex I subunit NDUFV2 [Pan troglodytes]
 gi|410214872|gb|JAA04655.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Pan
           troglodytes]
 gi|410297940|gb|JAA27570.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Pan
           troglodytes]
 gi|410353071|gb|JAA43139.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Pan
           troglodytes]
          Length = 249

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 116/241 (48%), Positives = 147/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           ++VR+L  T + N    ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 20  RHVRNLHKTAKQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 80  LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 131

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 132 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL  KD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 192 YYEDLTAKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240

Query: 222 P 222
           P
Sbjct: 241 P 241


>gi|27807025|ref|NP_776990.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           precursor [Bos taurus]
 gi|128865|sp|P04394.3|NDUV2_BOVIN RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial; AltName: Full=NADH dehydrogenase subunit
           II; AltName: Full=NADH-ubiquinone oxidoreductase 24 kDa
           subunit; Flags: Precursor
 gi|163399|gb|AAA87358.1| NADH-ubiquinone reductase 24 kDa subunit [Bos taurus]
 gi|74268334|gb|AAI02402.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Bos taurus]
 gi|296473660|tpg|DAA15775.1| TPA: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           precursor [Bos taurus]
          Length = 249

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 115/241 (47%), Positives = 147/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           +++R+L  T   N    ALFVHRDT ++N +  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 20  KHIRNLHKTAVQNGAGGALFVHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 80  LPVLDLAQRQNGWLPISAMNKVAEILQVPPMRVYEVATFYTMYNRKPVG--------KYH 131

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 132 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL PKD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 192 YYEDLTPKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240

Query: 222 P 222
           P
Sbjct: 241 P 241


>gi|194678241|ref|XP_001250335.2| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Bos taurus]
          Length = 254

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 115/241 (47%), Positives = 147/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTT--QRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           +++R+L  T  Q     ALFVHRDT ++N +  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 25  KHIRNLHKTAVQNGAGGALFVHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAV 84

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 85  LPVLDLAQRQNGWLPISAMNKVAEILQVPPMRVYEVATFYTMYNRKPVG--------KYH 136

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 137 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 196

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL PKD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 197 YYEDLTPKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 245

Query: 222 P 222
           P
Sbjct: 246 P 246


>gi|344270006|ref|XP_003406837.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Loxodonta africana]
          Length = 275

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 115/256 (44%), Positives = 151/256 (58%), Gaps = 55/256 (21%)

Query: 3   SNLAKLASNVVRQNVRSL-----STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAE 57
           +N  ++A   +R + R +     +  Q     ALFVHRDT ++N D  F+FTP+N KR E
Sbjct: 31  NNYGQVAFVALRSDGRHIRNLHKTAVQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIE 90

Query: 58  AIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIR 117
           AI+  YP GH+ AAV+P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ R
Sbjct: 91  AIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNKVAEILQVPPMRVYEVATFYTMYNR 150

Query: 118 KPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER-------------- 163
           KP+G        +YH+  CTTTPC LR+SD+ILE I++K  + +                
Sbjct: 151 KPVG--------KYHIQVCTTTPCMLRDSDSILEAIQRKLGIKVGETTPDKLFTLIEVEC 202

Query: 164 -----------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAR 206
                            +DL PKD+E+IID+LKAGK P PGP         +SGRF  + 
Sbjct: 203 LGACVNAPMVQINDNYYEDLTPKDVEEIIDELKAGKIPKPGP---------RSGRF--SC 251

Query: 207 EAYHDMTSLTGEPHGP 222
           E    +TSLT  P GP
Sbjct: 252 EPAGGLTSLTEAPKGP 267


>gi|345329641|ref|XP_001507932.2| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Ornithorhynchus anatinus]
          Length = 255

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 119/253 (47%), Positives = 148/253 (58%), Gaps = 51/253 (20%)

Query: 2   LSNLAKLASNVVRQNVRSLSTTQRLN-HDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           LS L  L++   RQ      T  R     ALFVHRDT ++N D  F+FTP+N KR EAI+
Sbjct: 14  LSALPGLSATWGRQTRYLHKTVARKGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIV 73

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
             YP GH+ AAV+P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+
Sbjct: 74  KNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNKVAEVLGVPPMRVYEVATFYTMYNRKPV 133

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------- 163
           G        +YH+  CTTTPC LR+SD+ILE I+KK  + +                   
Sbjct: 134 G--------KYHVQVCTTTPCMLRDSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGA 185

Query: 164 --------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL PKD+E IID+LKAGK P PGP         +SGRF  + E  
Sbjct: 186 CVNAPMVQINDNYYEDLTPKDIEDIIDELKAGKVPKPGP---------RSGRF--SCEPA 234

Query: 210 HDMTSLTGEPHGP 222
             +TSLT  P GP
Sbjct: 235 GGLTSLTEPPKGP 247


>gi|110625954|ref|NP_082664.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           precursor [Mus musculus]
 gi|146345463|sp|Q9D6J6.2|NDUV2_MOUSE RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial; AltName: Full=NADH-ubiquinone
           oxidoreductase 24 kDa subunit; Flags: Precursor
 gi|21410924|gb|AAH30946.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Mus musculus]
 gi|26347169|dbj|BAC37233.1| unnamed protein product [Mus musculus]
 gi|74139570|dbj|BAE40922.1| unnamed protein product [Mus musculus]
 gi|74150918|dbj|BAE27595.1| unnamed protein product [Mus musculus]
 gi|74151454|dbj|BAE38841.1| unnamed protein product [Mus musculus]
 gi|74197104|dbj|BAE35102.1| unnamed protein product [Mus musculus]
          Length = 248

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 110/224 (49%), Positives = 139/224 (62%), Gaps = 50/224 (22%)

Query: 30  ALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPIS 89
           ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV+P+LDLAQRQ+GWLPIS
Sbjct: 36  ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPIS 95

Query: 90  AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           AM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH+  CTTTPC LR+SD+I
Sbjct: 96  AMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYHIQVCTTTPCMLRDSDSI 147

Query: 150 LEVIKKKCNMMLER-------------------------------QDLEPKDMEQIIDDL 178
           LE +++K  + +                                 +DL PKD+E+IID+L
Sbjct: 148 LETLQRKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDEL 207

Query: 179 KAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           KAGK P PGP         +SGRFC   E    +TSLT  P GP
Sbjct: 208 KAGKVPKPGP---------RSGRFCC--EPAGGLTSLTEPPKGP 240


>gi|109098294|ref|XP_001108313.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Macaca mulatta]
          Length = 249

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 116/241 (48%), Positives = 146/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           ++VR+L  T   N    ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 20  RHVRNLHKTAMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 80  LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 131

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC L NSD+ILE I+KK  + +                               
Sbjct: 132 IQVCTTTPCMLGNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL PKD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 192 YYEDLTPKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240

Query: 222 P 222
           P
Sbjct: 241 P 241


>gi|354492616|ref|XP_003508443.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Cricetulus griseus]
          Length = 388

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 109/224 (48%), Positives = 137/224 (61%), Gaps = 50/224 (22%)

Query: 30  ALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPIS 89
           ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV+P+LDLAQRQ+GWLPIS
Sbjct: 176 ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPIS 235

Query: 90  AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           AM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH+  CTTTPC LR+SD+I
Sbjct: 236 AMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYHIQVCTTTPCMLRDSDSI 287

Query: 150 LEVIKKKCNMMLER-------------------------------QDLEPKDMEQIIDDL 178
           LE +++K  + +                                 +DL P D+E IID+L
Sbjct: 288 LETLQRKLGIKVGETTADKLFTLTEVECLGACVNAPMVQINDNYYEDLTPNDIEDIIDEL 347

Query: 179 KAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           KAGK P PGP         +SGRFC   E    +TSLT  P GP
Sbjct: 348 KAGKVPKPGP---------RSGRFCC--EPAGGLTSLTEPPKGP 380


>gi|395857324|ref|XP_003801048.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial [Otolemur garnettii]
          Length = 249

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 112/233 (48%), Positives = 140/233 (60%), Gaps = 50/233 (21%)

Query: 21  STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQ 80
           +  Q     ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV+P+LDLAQ
Sbjct: 28  TAVQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQ 87

Query: 81  RQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTP 140
           RQHGWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH+  CTTTP
Sbjct: 88  RQHGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYHIQVCTTTP 139

Query: 141 CWLRNSDAILEVIKKKCNMMLER-------------------------------QDLEPK 169
           C LRNSD+ILE I+KK  + +                                 +DL PK
Sbjct: 140 CMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPK 199

Query: 170 DMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           D++ IID+L+AGK P PGP         +SGRF  + E    +TSLT  P GP
Sbjct: 200 DIDDIIDELQAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKGP 241


>gi|225712256|gb|ACO11974.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Lepeophtheirus salmonis]
          Length = 240

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 111/237 (46%), Positives = 146/237 (61%), Gaps = 51/237 (21%)

Query: 18  RSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLD 77
           R +S +  L+HDA+FVHRD+ ++N ++ FEF  DNKKRA AI+SIYP GH++AA +PLLD
Sbjct: 15  RFISGSNVLSHDAIFVHRDSPENNENIPFEFNADNKKRAGAIMSIYPEGHKKAATLPLLD 74

Query: 78  LAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWC 136
           LAQRQ+ GWLPISAM+YVADF+++P+MRVYEVATFYTMFIR P+G        +YH+  C
Sbjct: 75  LAQRQNGGWLPISAMNYVADFIDMPRMRVYEVATFYTMFIRNPVG--------KYHVQVC 126

Query: 137 TTTPCWLRNSDAILEVIKKKCNMMLER-------------------------------QD 165
           TTTPCWLR SD IL+  K    + + +                               +D
Sbjct: 127 TTTPCWLRGSDEILKACKDNLGVPVGKMTQDKLFTISEVECLGACVNAPMVQINDDYYED 186

Query: 166 LEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           L  KDM++I+++LK   KPA GP         +S R+  A E +   TSLT  P GP
Sbjct: 187 LTVKDMDEILNELKVDTKPARGP---------RSSRY--AAEPFGGPTSLTEPPPGP 232


>gi|115502496|sp|Q0MQI8.1|NDUV2_GORGO RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial; AltName: Full=NADH-ubiquinone
           oxidoreductase 24 kDa subunit; Flags: Precursor
 gi|115502498|sp|Q0MQI7.1|NDUV2_PONPY RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial; AltName: Full=NADH-ubiquinone
           oxidoreductase 24 kDa subunit; Flags: Precursor
 gi|111661782|gb|ABH12155.1| mitochondrial complex I subunit NDUFV2 [Gorilla gorilla]
 gi|111661784|gb|ABH12156.1| mitochondrial complex I subunit NDUFV2 [Pongo pygmaeus]
          Length = 249

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 116/241 (48%), Positives = 146/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           ++VR+L  T   N    ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 20  RHVRNLHKTAMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 80  LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 131

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 132 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL  KD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 192 YYEDLTAKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240

Query: 222 P 222
           P
Sbjct: 241 P 241


>gi|338728030|ref|XP_001489155.3| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Equus caballus]
          Length = 272

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 115/241 (47%), Positives = 145/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTT--QRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           +++R+L  T  Q     ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 43  RHIRNLHKTAVQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 102

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 103 LPILDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 154

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 155 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 214

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL PKD+E+IID LKAG  P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 215 YYEDLTPKDIEEIIDALKAGTIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 263

Query: 222 P 222
           P
Sbjct: 264 P 264


>gi|48145973|emb|CAG33209.1| NDUFV2 [Homo sapiens]
          Length = 249

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 116/241 (48%), Positives = 146/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           ++VR+L  T   N    ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 20  RHVRNLHKTAMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 80  LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 131

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 132 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGESTPDKLFTLIEVECLGACVNAPMVQINDN 191

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL  KD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 192 YYEDLTAKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240

Query: 222 P 222
           P
Sbjct: 241 P 241


>gi|397475944|ref|XP_003809373.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial [Pan paniscus]
 gi|426385438|ref|XP_004059221.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial [Gorilla gorilla gorilla]
 gi|188852|gb|AAA75390.1| NADH-ubiquinone reductase [Homo sapiens]
 gi|48735289|gb|AAH71689.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Homo
           sapiens]
 gi|119622017|gb|EAX01612.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Homo
           sapiens]
 gi|189053259|dbj|BAG35065.1| unnamed protein product [Homo sapiens]
          Length = 249

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 116/241 (48%), Positives = 146/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           ++VR+L  T   N    ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 20  RHVRNLHKTAMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 80  LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 131

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 132 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL  KD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 192 YYEDLTAKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240

Query: 222 P 222
           P
Sbjct: 241 P 241


>gi|297702228|ref|XP_002828088.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial [Pongo abelii]
          Length = 249

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 116/241 (48%), Positives = 146/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           ++VR+L  T   N    ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 20  RHVRNLHKTAMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 80  LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 131

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 132 IQVCTTTPCMLRNSDSILEAIQKKLGIKIGETTPDKLFTLIEVECLGACVNAPMVQINDN 191

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL  KD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 192 YYEDLTAKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240

Query: 222 P 222
           P
Sbjct: 241 P 241


>gi|17561328|ref|NP_506376.1| Protein F53F4.10 [Caenorhabditis elegans]
 gi|6647669|sp|Q20719.1|NDUV2_CAEEL RecName: Full=Probable NADH dehydrogenase [ubiquinone] flavoprotein
           2, mitochondrial; Flags: Precursor
 gi|3877525|emb|CAB01203.1| Protein F53F4.10 [Caenorhabditis elegans]
          Length = 239

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 114/247 (46%), Positives = 147/247 (59%), Gaps = 51/247 (20%)

Query: 8   LASNVVRQNVR-SLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVG 66
           LASNV+ Q  R      +R     L VHRDTK++NL+VKF+FT +N++R +AI+ IYP G
Sbjct: 3   LASNVLLQASRLGEMVIKRGGATGLMVHRDTKENNLNVKFKFTSENQERIKAIMDIYPEG 62

Query: 67  HERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIK 126
           H+  A+IPLLDLAQRQHGWLPISAMH VA  L +P+MR YEVATFYTMF R+P+G     
Sbjct: 63  HKAGALIPLLDLAQRQHGWLPISAMHEVAKILEVPRMRAYEVATFYTMFNRQPVG----- 117

Query: 127 SILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM--------------------------M 160
              +Y L  C TTPC LR ++ I E I+KK  +                          M
Sbjct: 118 ---KYFLQVCATTPCMLRGAETITETIEKKLGIHAGETTKDGLFTLAEVECLGACVNAPM 174

Query: 161 LE-----RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSL 215
           ++      +DL PKD+ +I+DDLKAG+KPA GP         +SGR   A E + ++TSL
Sbjct: 175 IQINDDYFEDLTPKDVNEILDDLKAGRKPAAGP---------RSGRL--AAEPFGELTSL 223

Query: 216 TGEPHGP 222
              P GP
Sbjct: 224 KETPPGP 230


>gi|322800071|gb|EFZ21177.1| hypothetical protein SINV_07306 [Solenopsis invicta]
          Length = 243

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 111/253 (43%), Positives = 143/253 (56%), Gaps = 49/253 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML++L +       +N+R + TT     D LFVHRD++ DN ++ FEF   NKKR EA++
Sbjct: 1   MLTSLRRACGLFAPRNIRGVQTTANRASDQLFVHRDSEHDNPNIPFEFNEANKKRIEALL 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           +IYP GH+R A+IPLLDLAQRQHGWLPISAMH VA+ L +P MRVYEVATFYTMF RKP+
Sbjct: 61  AIYPEGHKRGAMIPLLDLAQRQHGWLPISAMHKVAEILGVPNMRVYEVATFYTMFNRKPM 120

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------- 163
           G        +YH+  CT TPCWLR+SD+I+  + K  N  L                   
Sbjct: 121 G--------KYHIQICTCTPCWLRDSDSIVNAVTKATNCELGGTSADKMFTVSEVECLGA 172

Query: 164 --------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL P+    II+ LK G++P PGP   +        RF  A +  
Sbjct: 173 CANAPMFQVNDDYYEDLTPETTTAIINALKKGERPPPGPQNVS--------RF--AADPA 222

Query: 210 HDMTSLTGEPHGP 222
             +TSLT  P GP
Sbjct: 223 GGLTSLTTPPPGP 235


>gi|222080062|ref|NP_066552.2| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           precursor [Homo sapiens]
 gi|20455499|sp|P19404.2|NDUV2_HUMAN RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial; AltName: Full=NADH-ubiquinone
           oxidoreductase 24 kDa subunit; Flags: Precursor
 gi|12804451|gb|AAH01632.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Homo
           sapiens]
 gi|17028359|gb|AAH17487.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Homo
           sapiens]
 gi|123984347|gb|ABM83519.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [synthetic
           construct]
 gi|123998275|gb|ABM86739.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [synthetic
           construct]
 gi|307684502|dbj|BAJ20291.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [synthetic
           construct]
          Length = 249

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 116/241 (48%), Positives = 146/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTT--QRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           ++VR+L  T  Q     ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 20  RHVRNLHKTVMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 80  LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 131

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 132 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL  KD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 192 YYEDLTAKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240

Query: 222 P 222
           P
Sbjct: 241 P 241


>gi|38048647|gb|AAR10226.1| similar to Drosophila melanogaster CG5703, partial [Drosophila
           yakuba]
          Length = 155

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 97/159 (61%), Positives = 117/159 (73%), Gaps = 8/159 (5%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML+N A      VR N+R+++T+     D LFVHRDT +DN ++ FEFT +NKKR EAI+
Sbjct: 1   MLTNCASKTLAAVRANIRAIATSSARASDNLFVHRDTPEDNPNIPFEFTAENKKRVEAIL 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           SIYP GH+R A+IPLLDLAQRQ+GWLPISAMH VA+ L LP MRVYEVATFYTMF+RKP 
Sbjct: 61  SIYPEGHKRGAMIPLLDLAQRQYGWLPISAMHKVAEILQLPNMRVYEVATFYTMFMRKPT 120

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           G        +YH+  CTTTPCWLR SD ILE  KK+  +
Sbjct: 121 G--------KYHIQVCTTTPCWLRGSDDILETCKKQLGI 151


>gi|225715916|gb|ACO13804.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Esox
           lucius]
          Length = 244

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 117/258 (45%), Positives = 150/258 (58%), Gaps = 54/258 (20%)

Query: 5   LAKLASNVVRQNVRSL----STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           L+    NVV Q  R +     +T R     +FVHRDT ++N D  FEFT D+ KR +AII
Sbjct: 3   LSSTIRNVVHQTARHVRNLHQSTVRAGAGGIFVHRDTPENNPDTPFEFTADDLKRIDAII 62

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           S+YP GH++AA IP+LDLAQRQHGWLPISA + VA+ L +P MRVYEVATFYTM +R+P+
Sbjct: 63  SMYPEGHKQAATIPVLDLAQRQHGWLPISATNKVAEVLEVPPMRVYEVATFYTMLLRQPV 122

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM------------MLE------ 162
           G        +YH+  CTTTPC L NSD+ILE I+ K  +            ++E      
Sbjct: 123 G--------KYHIQICTTTPCMLCNSDSILEAIQNKLGIKVGGMTADKMFSLIEVECLGA 174

Query: 163 -------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL PKDM++IID+LKAGK P PGP         ++GRF  + E  
Sbjct: 175 CVNAPMVQINDNYYEDLTPKDMDKIIDELKAGKIPPPGP---------RNGRF--SCEPA 223

Query: 210 HDMTSLTGEPHGPWDSKR 227
             +TSLT  P GP    R
Sbjct: 224 GGLTSLTEPPPGPGFGVR 241


>gi|12850902|dbj|BAB28888.1| unnamed protein product [Mus musculus]
          Length = 248

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 109/224 (48%), Positives = 138/224 (61%), Gaps = 50/224 (22%)

Query: 30  ALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPIS 89
           ALFVHRDT ++N D  F+FTP+N KR E I+  YP GH+ AAV+P+LDLAQRQ+GWLPIS
Sbjct: 36  ALFVHRDTPENNPDTPFDFTPENYKRIETIVKNYPEGHQAAAVLPVLDLAQRQNGWLPIS 95

Query: 90  AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           AM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH+  CTTTPC LR+SD+I
Sbjct: 96  AMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYHIQVCTTTPCMLRDSDSI 147

Query: 150 LEVIKKKCNMMLER-------------------------------QDLEPKDMEQIIDDL 178
           LE +++K  + +                                 +DL PKD+E+IID+L
Sbjct: 148 LETLQRKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDEL 207

Query: 179 KAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           KAGK P PGP         +SGRFC   E    +TSLT  P GP
Sbjct: 208 KAGKVPKPGP---------RSGRFCC--EPAGGLTSLTEPPKGP 240


>gi|1364245|emb|CAA32848.1| NADH dehydrogenase 24 kDa subunit (AA 6-217) [Bos taurus]
          Length = 212

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 110/223 (49%), Positives = 138/223 (61%), Gaps = 50/223 (22%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           LFVHRDT ++N +  F+FTP+N KR EAI+  YP GH+ AAV+P+LDLAQRQ+GWLPISA
Sbjct: 1   LFVHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           M+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH+  CTTTPC LRNSD+IL
Sbjct: 61  MNKVAEILQVPPMRVYEVATFYTMYNRKPVG--------KYHIQVCTTTPCMLRNSDSIL 112

Query: 151 EVIKKKCNMMLER-------------------------------QDLEPKDMEQIIDDLK 179
           E I+KK  + +                                 +DL PKD+E+IID+LK
Sbjct: 113 EAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELK 172

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           AGK P PGP         +SGRF  + E    +TSLT  P GP
Sbjct: 173 AGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKGP 204


>gi|268554574|ref|XP_002635274.1| Hypothetical protein CBG11518 [Caenorhabditis briggsae]
          Length = 239

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 114/247 (46%), Positives = 147/247 (59%), Gaps = 51/247 (20%)

Query: 8   LASNVVRQNVR-SLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVG 66
           L SN++ Q  R     T+R     L VHRDTK++NL+VKF+FTP+N+ R +AI +IYP G
Sbjct: 3   LTSNMMLQASRLGGIVTKRGGATGLMVHRDTKENNLNVKFKFTPENEDRIKAICAIYPEG 62

Query: 67  HERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIK 126
           H+  A+IPLLDLAQRQHGWLPISAMH VA  L +P+MR YEVATFYTMF R+P+G     
Sbjct: 63  HKAGALIPLLDLAQRQHGWLPISAMHEVARILEVPRMRAYEVATFYTMFNRQPVG----- 117

Query: 127 SILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM--------------------------M 160
              +Y L  C TTPC LR ++ I E I+KK  +                          M
Sbjct: 118 ---KYFLQVCATTPCMLRGAETITETIEKKLGIHAGETTKDGLFTLAEVECLGACVNAPM 174

Query: 161 LE-----RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSL 215
           ++      +DL PKD+ +I+DDLKAG+KPA GP         +SGR   A E + ++TSL
Sbjct: 175 IQINDDYFEDLTPKDVHEILDDLKAGRKPAAGP---------RSGRL--AAEPFGELTSL 223

Query: 216 TGEPHGP 222
              P GP
Sbjct: 224 KETPPGP 230


>gi|198433298|ref|XP_002128498.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein
           2, mitochondrial precursor (NADH-ubiquinone
           oxidoreductase 24 kDa subunit) (NADH dehydrogenase
           subunit II) [Ciona intestinalis]
          Length = 242

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 116/253 (45%), Positives = 147/253 (58%), Gaps = 50/253 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           MLS+L +  S+V RQN R L  +   N  A+F H DT ++N +  F+FT  N +R EAI 
Sbjct: 1   MLSSLRQALSSVARQNSRLLHRSTAANSGAIFNHVDTPENNANTPFDFTKKNYERIEAIK 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           + YP GH+ AAV+P+LDLAQRQHGWLPISAM+ VA+ L++P MRVYEVATFYTM+ R PI
Sbjct: 61  ANYPEGHKVAAVMPILDLAQRQHGWLPISAMNKVAELLDVPPMRVYEVATFYTMYNRNPI 120

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------- 163
           G        +YHL  CTTTPC L  SD ILEVI+KK  + +                   
Sbjct: 121 G--------KYHLQLCTTTPCMLCGSDGILEVIQKKLGIKVGETTKDGLFTLMEAECLGA 172

Query: 164 --------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL+P DME+I+DDL  G++P PGP         +S RF  A E  
Sbjct: 173 CVNAPMIQINDMYYEDLKPSDMEEILDDLTNGREPKPGP---------RSERF--ACEPL 221

Query: 210 HDMTSLTGEPHGP 222
             +TSLT  P GP
Sbjct: 222 GGLTSLTEPPTGP 234


>gi|3123721|dbj|BAA25988.1| 24-kDa subunit of complex I [Homo sapiens]
          Length = 231

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 115/241 (47%), Positives = 146/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           ++VR+L  T   N    ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 2   RHVRNLHKTAMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 61

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +Y+
Sbjct: 62  LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYY 113

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 114 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 173

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL  KD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 174 YYEDLTAKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 222

Query: 222 P 222
           P
Sbjct: 223 P 223


>gi|348521990|ref|XP_003448509.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like isoform 3 [Oreochromis niloticus]
          Length = 247

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 118/257 (45%), Positives = 149/257 (57%), Gaps = 53/257 (20%)

Query: 3   SNLAKLASNVVRQNVRSL-STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIIS 61
           S +  L S+V++   RSL  +  R     +FVHRDT D+N D  FEFT +NKKR EAI S
Sbjct: 9   SAVFYLFSSVLQ--ARSLHQSAVRAGAGGIFVHRDTPDNNPDTPFEFTEENKKRIEAITS 66

Query: 62  IYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIG 121
           +YP GH++AA IP+LDLAQRQHGWLPISAM+ VA+ L +P MRVYEVATFYTMF+RKP+G
Sbjct: 67  MYPEGHKQAATIPVLDLAQRQHGWLPISAMNKVAEVLEIPPMRVYEVATFYTMFLRKPVG 126

Query: 122 EERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER------------------ 163
                   +Y +  CTTTPC L NSD+I+E I+ K  + +                    
Sbjct: 127 --------KYFIQVCTTTPCMLCNSDSIVEAIQNKLGIKVGETTPDKMFTVIEVECLGAC 178

Query: 164 -------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYH 210
                        +DL PKD+E IID+LKAG+ P PGP         +S RF  + E   
Sbjct: 179 VNAPMVQINDNYYEDLTPKDIEDIIDELKAGRVPPPGP---------RSSRF--SCEPAG 227

Query: 211 DMTSLTGEPHGPWDSKR 227
            +TSLT  P GP    R
Sbjct: 228 GLTSLTEPPKGPGFGVR 244


>gi|288856259|ref|NP_001165785.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           [Nasonia vitripennis]
          Length = 243

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 114/253 (45%), Positives = 147/253 (58%), Gaps = 49/253 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           M ++L K  S  + +N+R+L T+     DALFVHRDT+ DN ++ FEF   NKKR EAI+
Sbjct: 1   MFTSLRKACSLSLLKNIRNLQTSAVRTSDALFVHRDTEQDNPNIPFEFDAANKKRIEAIL 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
            IYP GH+R A+IPLLDLAQRQHGWLPISAMH VA+ L +  MRVYEVATFYTMF R+P+
Sbjct: 61  KIYPEGHKRGAMIPLLDLAQRQHGWLPISAMHKVAEILGVSNMRVYEVATFYTMFNRRPM 120

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM--------------------- 159
           G        +YH+  CT TPCWLR+SD+I++ +K+  N                      
Sbjct: 121 G--------KYHVQVCTCTPCWLRDSDSIMKAVKELTNCEVGGNSPDNMFSISEVECLGA 172

Query: 160 -----MLE-----RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                ML+      +DL P+    II+ LK G++PAPGP            R+  A E  
Sbjct: 173 CANAPMLQVNDDYYEDLTPETTATIINALKRGERPAPGPQC--------KNRY--AAEPN 222

Query: 210 HDMTSLTGEPHGP 222
             +TSLT  P  P
Sbjct: 223 GGLTSLTSPPKEP 235


>gi|297493972|gb|ADI40708.1| NADH dehydrogenase flavoprotein 2, 24kDa [Cynopterus sphinx]
          Length = 213

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 112/230 (48%), Positives = 139/230 (60%), Gaps = 50/230 (21%)

Query: 21  STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQ 80
           +  Q     ALFVHRDT D+N D  F+FTP+N KR EAI+  YP GH+ AAV+P+LDLAQ
Sbjct: 3   TAVQNGAGGALFVHRDTPDNNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQ 62

Query: 81  RQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTP 140
           RQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH+  CTTTP
Sbjct: 63  RQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYHIQVCTTTP 114

Query: 141 CWLRNSDAILEVIKKKCNMMLER-------------------------------QDLEPK 169
           C LRNSD+ILE I+KK  + +                                 +DL PK
Sbjct: 115 CMLRNSDSILEXIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPK 174

Query: 170 DMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEP 219
           D+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P
Sbjct: 175 DIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPP 213


>gi|229366530|gb|ACQ58245.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Anoplopoma fimbria]
 gi|229366846|gb|ACQ58403.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Anoplopoma fimbria]
          Length = 244

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 115/259 (44%), Positives = 148/259 (57%), Gaps = 51/259 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSL-STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAI 59
            LS   + A +   + VRSL  +  R     +FVHRDT D+N D  F+FT +NK R EAI
Sbjct: 2   FLSAAVRSAVSQTARQVRSLHRSAARAGAGGIFVHRDTPDNNADTPFDFTEENKMRIEAI 61

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           IS+YPVGH++AA IP+LD+AQRQHGWLPISAM+ VA+ L +  MRVYEVATFYTMF+R+P
Sbjct: 62  ISMYPVGHKQAATIPVLDVAQRQHGWLPISAMNKVAEVLEVAPMRVYEVATFYTMFLRQP 121

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER---------------- 163
           +G        +Y +  CTTTPC L NSD+ILE I+ K  + +                  
Sbjct: 122 VG--------KYFIQICTTTPCMLCNSDSILEAIQNKLGIKVGETTPDKMFTLIEVECLG 173

Query: 164 ---------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREA 208
                          +DL PKD+E IID+LKAG+ P PGP         ++GRF  + E 
Sbjct: 174 ACVNAPMVQINDNYYEDLSPKDIEDIIDELKAGRVPLPGP---------RNGRF--SCEP 222

Query: 209 YHDMTSLTGEPHGPWDSKR 227
              +TSL   P GP    R
Sbjct: 223 AGGLTSLIEPPKGPGFGVR 241


>gi|351712001|gb|EHB14920.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial,
           partial [Heterocephalus glaber]
          Length = 231

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 113/241 (46%), Positives = 144/241 (59%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTT--QRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           + +R+L  T  Q     ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 2   RQIRNLHKTAVQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVRNYPEGHKAAAV 61

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 62  LPVLDLAQRQSGWLPISAMNKVAEILQVPPMRVYEVATFYTMYNRKPVG--------KYH 113

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LR+SD+ILE I++K  + +                               
Sbjct: 114 IQVCTTTPCMLRDSDSILEAIQQKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 173

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL  KD+E+IID+LKAG+ P PGP         +SGRFC   E    +TSLT  P G
Sbjct: 174 YYEDLTSKDIEEIIDELKAGRIPKPGP---------RSGRFCC--EPAGGLTSLTEPPKG 222

Query: 222 P 222
           P
Sbjct: 223 P 223


>gi|297493968|gb|ADI40706.1| NADH dehydrogenase flavoprotein 2, 24kDa [Scotophilus kuhlii]
          Length = 213

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 111/230 (48%), Positives = 139/230 (60%), Gaps = 50/230 (21%)

Query: 21  STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQ 80
           +  Q     ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV+P+LDLAQ
Sbjct: 3   TAVQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQ 62

Query: 81  RQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTP 140
           RQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH+  CTTTP
Sbjct: 63  RQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYHIQICTTTP 114

Query: 141 CWLRNSDAILEVIKKKCNMMLER-------------------------------QDLEPK 169
           C LRNSD+ILE I+KK  + +                                 +DL PK
Sbjct: 115 CMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPK 174

Query: 170 DMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEP 219
           D+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P
Sbjct: 175 DIEEIIDELKAGKMPKPGP---------RSGRF--SCEPAGGLTSLTEPP 213


>gi|205628|gb|AAA41669.1| 24-kDa mitochondrial NADH dehydrogenase precursor (EC 1.6.99.3),
           partial [Rattus norvegicus]
          Length = 241

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 109/233 (46%), Positives = 140/233 (60%), Gaps = 50/233 (21%)

Query: 21  STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQ 80
           +  Q     ALFVHRDT ++N D  F+FTP+N +R EAI+  YP GH  AAV+P+LDLAQ
Sbjct: 20  TAVQNGAGGALFVHRDTPENNPDTPFDFTPENYERIEAIVRNYPEGHRAAAVLPVLDLAQ 79

Query: 81  RQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTP 140
           RQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH+  CTTTP
Sbjct: 80  RQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYHIQVCTTTP 131

Query: 141 CWLRNSDAILEVIKKKCNMMLER-------------------------------QDLEPK 169
           C LR+SD+ILE +++K  + +                                 +DL PK
Sbjct: 132 CMLRDSDSILETLQRKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDDYYEDLTPK 191

Query: 170 DMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           D+E+IID+L+AGK P PGP         +SGRFC   E    +TSLT  P GP
Sbjct: 192 DIEEIIDELRAGKVPKPGP---------RSGRFCC--EPAGGLTSLTEPPKGP 233


>gi|51092268|ref|NP_112326.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           precursor [Rattus norvegicus]
 gi|83305118|sp|P19234.2|NDUV2_RAT RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial; AltName: Full=NADH-ubiquinone
           oxidoreductase 24 kDa subunit; Flags: Precursor
 gi|34849740|gb|AAH58495.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Rattus norvegicus]
 gi|149037363|gb|EDL91794.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, isoform CRA_a
           [Rattus norvegicus]
          Length = 248

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 109/233 (46%), Positives = 140/233 (60%), Gaps = 50/233 (21%)

Query: 21  STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQ 80
           +  Q     ALFVHRDT ++N D  F+FTP+N +R EAI+  YP GH  AAV+P+LDLAQ
Sbjct: 27  TAVQNGAGGALFVHRDTPENNPDTPFDFTPENYERIEAIVRNYPEGHRAAAVLPVLDLAQ 86

Query: 81  RQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTP 140
           RQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH+  CTTTP
Sbjct: 87  RQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYHIQVCTTTP 138

Query: 141 CWLRNSDAILEVIKKKCNMMLER-------------------------------QDLEPK 169
           C LR+SD+ILE +++K  + +                                 +DL PK
Sbjct: 139 CMLRDSDSILETLQRKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDDYYEDLTPK 198

Query: 170 DMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           D+E+IID+L+AGK P PGP         +SGRFC   E    +TSLT  P GP
Sbjct: 199 DIEEIIDELRAGKVPKPGP---------RSGRFCC--EPAGGLTSLTEPPKGP 240


>gi|158257162|dbj|BAF84554.1| unnamed protein product [Homo sapiens]
          Length = 249

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 115/240 (47%), Positives = 145/240 (60%), Gaps = 52/240 (21%)

Query: 15  QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           ++VR+L  T   N    ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 20  RHVRNLHKTAMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 80  LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 131

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 132 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL  KD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 192 YYEDLTAKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240


>gi|297493970|gb|ADI40707.1| NADH dehydrogenase flavoprotein 2, 24kDa [Miniopterus schreibersii]
          Length = 213

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 111/230 (48%), Positives = 139/230 (60%), Gaps = 50/230 (21%)

Query: 21  STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQ 80
           +  Q     ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV+P+LDLAQ
Sbjct: 3   TAVQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQ 62

Query: 81  RQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTP 140
           RQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH+  CTTTP
Sbjct: 63  RQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYHIQICTTTP 114

Query: 141 CWLRNSDAILEVIKKKCNMMLER-------------------------------QDLEPK 169
           C LRNSD+ILE I+KK  + +                                 +DL PK
Sbjct: 115 CMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPK 174

Query: 170 DMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEP 219
           D+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P
Sbjct: 175 DIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPP 213


>gi|332031615|gb|EGI71087.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           [Acromyrmex echinatior]
          Length = 243

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 109/253 (43%), Positives = 143/253 (56%), Gaps = 49/253 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML++L +       +N+R + TT     D LFVHRD++ DN ++ FEF   NKKR +A++
Sbjct: 1   MLASLRRACGLFAPRNIRRVQTTANRTSDQLFVHRDSEQDNPNIPFEFNEANKKRIDALL 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           +IYP GH+R A+IPLLDLAQRQHGWLPISAMH VA+ L++P+MRVYEVATFYTMF RKP+
Sbjct: 61  AIYPEGHKRGAMIPLLDLAQRQHGWLPISAMHKVAEILDVPRMRVYEVATFYTMFNRKPM 120

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLE------------------ 162
           G        +YH+  CT TPCWLR+SD+I+  + K  N  L                   
Sbjct: 121 G--------KYHVQICTCTPCWLRDSDSIVNAVTKATNCELGGTSADKLFTISEVECLGA 172

Query: 163 -------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL P+    II+  K G++P PGP            RF  A +  
Sbjct: 173 CANAPMFQVNDDYYEDLTPETATTIINAFKKGERPPPGP--------QNCSRF--AADPA 222

Query: 210 HDMTSLTGEPHGP 222
             +TSLT  P GP
Sbjct: 223 GGLTSLTTPPPGP 235


>gi|196003474|ref|XP_002111604.1| hypothetical protein TRIADDRAFT_24589 [Trichoplax adhaerens]
 gi|190585503|gb|EDV25571.1| hypothetical protein TRIADDRAFT_24589, partial [Trichoplax
           adhaerens]
          Length = 209

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 108/226 (47%), Positives = 137/226 (60%), Gaps = 50/226 (22%)

Query: 34  HRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHY 93
           HRD+KD+NLD+ FEFT  +KKRAE II+ YP GH+ AA+IPLLDLAQRQHGWLP++AM+Y
Sbjct: 1   HRDSKDNNLDIPFEFTEKSKKRAEQIIANYPEGHKNAAIIPLLDLAQRQHGWLPLTAMNY 60

Query: 94  VADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVI 153
           VAD+L++ +MR+YEVATFYTMF R P+G        +YH+  CTTTPC LR+SD+IL VI
Sbjct: 61  VADYLSVSRMRIYEVATFYTMFNRYPMG--------KYHIQICTTTPCMLRDSDSILNVI 112

Query: 154 KKKCNMMLER-------------------------------QDLEPKDMEQIIDDLKAGK 182
           K K  + + +                               +DL   DME+I+D LKAG 
Sbjct: 113 KSKLGIEIGQTTKDGLFTLSEVECLGACVNAPMVQINDDYYEDLTTNDMEEILDSLKAGS 172

Query: 183 KPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPWDSKRD 228
           KP  GP         +SGR C   E    +TSL+  P GP    RD
Sbjct: 173 KPTAGP---------RSGRKCA--EPITGLTSLSSPPTGPGFGVRD 207


>gi|383853708|ref|XP_003702364.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Megachile rotundata]
          Length = 243

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 108/239 (45%), Positives = 137/239 (57%), Gaps = 49/239 (20%)

Query: 15  QNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIP 74
           +N+R L T+     D LFVHRD++ DN  + FEF   NKKR EA++ IYP GH+R A+IP
Sbjct: 15  KNLRGLQTSASRTSDQLFVHRDSEVDNPKIPFEFNEANKKRIEALLKIYPEGHKRGAMIP 74

Query: 75  LLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLN 134
           LLDLAQRQHGWLPISAMH VA+ LN+P MRVYEVATFYTMF R+P+G        +YH+ 
Sbjct: 75  LLDLAQRQHGWLPISAMHKVAEILNVPHMRVYEVATFYTMFNRRPMG--------KYHVQ 126

Query: 135 WCTTTPCWLRNSDAILEVIKKKCNMMLER------------------------------- 163
            CT TPCWLR+SD+I++ + K  N  +                                 
Sbjct: 127 ICTCTPCWLRDSDSIVDAVTKATNCKIGEMSEDKLFTVSEVECLGACANAPMFQVNDDYY 186

Query: 164 QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           +DL P+    II+ LK G++P PGP          S RF  A +    +TSLT  P GP
Sbjct: 187 EDLTPESATAIINALKKGERPPPGP--------QNSPRF--AADPSGGLTSLTSPPPGP 235


>gi|227297|prf||1701345A NADH dehydrogenase FeS protein
          Length = 249

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 115/241 (47%), Positives = 145/241 (60%), Gaps = 52/241 (21%)

Query: 15  QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           ++VR+L  T   N    ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 20  RHVRNLHKTAMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 80  LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 131

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +   TTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 132 IQVGTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL  KD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 192 YYEDLTAKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240

Query: 222 P 222
           P
Sbjct: 241 P 241


>gi|395511724|ref|XP_003760103.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Sarcophilus harrisii]
          Length = 249

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 109/233 (46%), Positives = 140/233 (60%), Gaps = 50/233 (21%)

Query: 21  STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQ 80
           +  Q     ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV+P+LDLAQ
Sbjct: 28  TAVQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQ 87

Query: 81  RQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTP 140
           RQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH+  CTTTP
Sbjct: 88  RQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYHIQVCTTTP 139

Query: 141 CWLRNSDAILEVIKKKCNMMLER-------------------------------QDLEPK 169
           C LR+SD+ILE I+KK  + +                                 +DL PK
Sbjct: 140 CMLRDSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPK 199

Query: 170 DMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           D+E+I+D+LKAG  P PGP         ++GRF  + E    +TSLT  P GP
Sbjct: 200 DIEEILDELKAGNVPKPGP---------RNGRF--SCEPAGGLTSLTEPPKGP 241


>gi|297493974|gb|ADI40709.1| NADH dehydrogenase flavoprotein 2, 24kDa [Rousettus leschenaultii]
          Length = 201

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 105/204 (51%), Positives = 130/204 (63%), Gaps = 48/204 (23%)

Query: 30  ALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPIS 89
           ALFVHRDT D+N D  F+FTP+N KR EAI++ YP GH+ AAV+P+LDLAQRQ+GWLPIS
Sbjct: 7   ALFVHRDTPDNNPDTPFDFTPENYKRIEAIVNNYPEGHKAAAVLPVLDLAQRQNGWLPIS 66

Query: 90  AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           AM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH+  CTTTPC LRNSD+I
Sbjct: 67  AMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYHIQVCTTTPCMLRNSDSI 118

Query: 150 LEVIKKKCNMMLER-------------------------------QDLEPKDMEQIIDDL 178
           LE I+KK  + +                                 +DL PKD+E+IID+L
Sbjct: 119 LEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDSYYEDLTPKDIEEIIDEL 178

Query: 179 KAGKKPAPGPSGYTSGIGSQSGRF 202
           KAGK P PGP         +SGRF
Sbjct: 179 KAGKIPKPGP---------RSGRF 193


>gi|72007636|ref|XP_783224.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Strongylocentrotus purpuratus]
          Length = 242

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 111/245 (45%), Positives = 140/245 (57%), Gaps = 50/245 (20%)

Query: 15  QNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIP 74
           Q +R+L T++      LFVHRD+  +N +  FEFT +N KR   II+ YP GH+ AA +P
Sbjct: 15  QQLRTLHTSRAAASGQLFVHRDSDANNPNTPFEFTEENMKRVNDIIANYPEGHQAAACLP 74

Query: 75  LLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLN 134
           +LDLAQRQHGW PISAM+ VAD L +PKMRVYEVATFYTMF R P+G        +YH+ 
Sbjct: 75  ILDLAQRQHGWTPISAMNKVADILKMPKMRVYEVATFYTMFNRNPVG--------KYHIQ 126

Query: 135 WCTTTPCWLRNSDAILEVIKKKCNMMLER------------------------------- 163
            CTTTPC LR+SD+ILEV+ +K  + +                                 
Sbjct: 127 ICTTTPCMLRDSDSILEVLTRKLGIKVGETTKDNMFTLAEVECLGACVNAPMVQINDNYY 186

Query: 164 QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPW 223
           +DL  KDME+IIDDLKAG+ P PGP         ++ RF  A E    +TSL   P GP 
Sbjct: 187 EDLAVKDMEEIIDDLKAGRTPKPGP---------RNARF--ASEPEGGLTSLIDPPTGPG 235

Query: 224 DSKRD 228
              RD
Sbjct: 236 FGVRD 240


>gi|380026840|ref|XP_003697148.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Apis florea]
          Length = 243

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 110/253 (43%), Positives = 141/253 (55%), Gaps = 49/253 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           M  +L  + +    +NVR L T+     D LFVHRD++ DN  + FEF   NKKR EA++
Sbjct: 1   MFPSLCTIRTFFNYKNVRGLQTSIIRTSDQLFVHRDSEVDNPSIPFEFNEANKKRIEALL 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
            IYP GH+R A+IPLLDLAQRQHGWLPISAMH VA+ LN+P+MRVYEVATFYTMF R+P+
Sbjct: 61  KIYPEGHKRGAMIPLLDLAQRQHGWLPISAMHKVAEILNIPRMRVYEVATFYTMFNRRPM 120

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------- 163
           G        +YH+  CT TPCWLR+SD+I+E + K  N  +                   
Sbjct: 121 G--------KYHVQICTCTPCWLRDSDSIVEAVTKATNCKVGEMSADKLFTVSEVECLGA 172

Query: 164 --------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL P+    II+  K  ++P PGP          S RF  A +  
Sbjct: 173 CANAPMFQVNDDYYEDLTPESATAIINAFKKDERPPPGP--------QNSPRF--AADPA 222

Query: 210 HDMTSLTGEPHGP 222
             +TSLT  P GP
Sbjct: 223 GGLTSLTSPPPGP 235


>gi|319146358|ref|NP_001188137.1| mitochondrial NADH dehydrogenase (ubiquinone) flavoprotein 2
           [Ictalurus punctatus]
 gi|308323143|gb|ADO28708.1| mitochondrial NADH dehydrogenase (ubiquinone) flavoprotein 2
           [Ictalurus punctatus]
          Length = 244

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 116/257 (45%), Positives = 149/257 (57%), Gaps = 52/257 (20%)

Query: 3   SNLAKLASNVVRQNVRSLSTTQ-RLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIIS 61
           S L    S+  RQ VRSL  +  R     +FVHRDT ++N D  FEFTP+N KR EAII+
Sbjct: 5   SALRSAVSHAGRQ-VRSLHRSAIRAGAGGVFVHRDTPENNPDTPFEFTPENMKRVEAIIT 63

Query: 62  IYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIG 121
            YP GH++AA IP+LDLAQRQHGWLPISAM+ VA+ L++  MRVYEVATFYTMF R+P+G
Sbjct: 64  NYPEGHKQAATIPVLDLAQRQHGWLPISAMNKVAEILDVSPMRVYEVATFYTMFNRQPVG 123

Query: 122 EERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER------------------ 163
                   +YH+  CTTTPC L +SD+IL+ I+ K  + +                    
Sbjct: 124 --------KYHIQICTTTPCMLCDSDSILQAIQNKLGIKVGETTADGLFTLIEVECLGAC 175

Query: 164 -------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYH 210
                        +DL+P D+E IID+LKAG+ P PGP         ++GRF  + E   
Sbjct: 176 VNAPMVQINDNYYEDLKPSDIEHIIDELKAGRVPPPGP---------RNGRF--SCEPAG 224

Query: 211 DMTSLTGEPHGPWDSKR 227
            +TSLT  P GP    R
Sbjct: 225 GLTSLTEPPPGPGFGVR 241


>gi|387017200|gb|AFJ50718.1| NADH dehydrogenase flavoprotein 2 [Crotalus adamanteus]
          Length = 245

 Score =  199 bits (506), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 112/240 (46%), Positives = 141/240 (58%), Gaps = 52/240 (21%)

Query: 16  NVRSLSTTQ--RLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVI 73
           N+R L T+   R +   LFVHRDT ++N    F+FTP+N KR + I++ YP GH+ +AVI
Sbjct: 17  NLRCLHTSAECRSSDGTLFVHRDTPENNPSTPFDFTPENYKRIDVIVNNYPEGHKSSAVI 76

Query: 74  PLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHL 133
           P+LDLAQRQHGWLPISAM+ VAD L +P MRVYEVATFYTMF RKP+G        +YH+
Sbjct: 77  PVLDLAQRQHGWLPISAMNKVADILQMPPMRVYEVATFYTMFNRKPVG--------KYHI 128

Query: 134 NWCTTTPCWLRNSDAILEVIKKKCNMMLER------------------------------ 163
             CTTTPC LR+SD+ILE I+KK  + +                                
Sbjct: 129 QICTTTPCMLRDSDSILEAIQKKLGIKVGETTSDKLFTVTEVECLGACVNAPMVQINDNY 188

Query: 164 -QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
            +DL   D+E IID+LKAG  P PGP         +SGRF  + E    +TSLT  P GP
Sbjct: 189 YEDLTTNDIENIIDELKAGNIPKPGP---------RSGRF--SCEPSGSLTSLTEPPKGP 237


>gi|66534614|ref|XP_393287.2| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial [Apis mellifera]
          Length = 243

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 110/253 (43%), Positives = 142/253 (56%), Gaps = 49/253 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           M  +L  + +    +NVR L T+     D LFVHRD++ DN  + FEF   NKKR EA++
Sbjct: 1   MFPSLYTIRTFFNYKNVRRLQTSIIRTSDQLFVHRDSEVDNPSIPFEFNEANKKRIEALL 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
            IYP GH+R A+IPLLDLAQRQ+GWLPISAMH VA+ LN+P+MRVYEVATFYTMF R+P+
Sbjct: 61  KIYPEGHKRGAMIPLLDLAQRQYGWLPISAMHKVAEILNIPRMRVYEVATFYTMFNRRPM 120

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------- 163
           G        +YH+  CT TPCWLR+SD+I+E + K  N  +                   
Sbjct: 121 G--------KYHVQICTCTPCWLRDSDSIVEAVTKVTNCKVGEMSADKLFTVSEVECLGA 172

Query: 164 --------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                         +DL P+    II+  K G++P PGP          S RF  A +  
Sbjct: 173 CANAPMFQVNDDYYEDLTPESAISIINAFKKGERPPPGP--------QNSPRF--AADPA 222

Query: 210 HDMTSLTGEPHGP 222
             +TSLT  P GP
Sbjct: 223 GGLTSLTSPPPGP 235


>gi|281338965|gb|EFB14549.1| hypothetical protein PANDA_005960 [Ailuropoda melanoleuca]
          Length = 209

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 108/220 (49%), Positives = 135/220 (61%), Gaps = 50/220 (22%)

Query: 34  HRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHY 93
           HRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV+P+LDLAQRQ+GWLPISAM+ 
Sbjct: 1   HRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNK 60

Query: 94  VADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVI 153
           VA+ L +P MRVYEVATFYTM+ RKP+G        +YH+  CTTTPC LRNSD+ILE I
Sbjct: 61  VAEVLKVPPMRVYEVATFYTMYNRKPVG--------KYHIQVCTTTPCMLRNSDSILEAI 112

Query: 154 KKKCNMMLER-------------------------------QDLEPKDMEQIIDDLKAGK 182
           +KK  + +                                 +DL PKD+E+IID+LKAGK
Sbjct: 113 QKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK 172

Query: 183 KPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
            P PGP         +SGRF  + E    +TSLT  P GP
Sbjct: 173 IPKPGP---------RSGRF--SCEPAGGLTSLTEPPKGP 201


>gi|148235351|ref|NP_001090944.1| NADH dehydrogenase ubiquinone flavoprotein 2 [Sus scrofa]
 gi|117660947|gb|ABK55646.1| NDUFV2 [Sus scrofa]
          Length = 249

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 114/240 (47%), Positives = 143/240 (59%), Gaps = 52/240 (21%)

Query: 15  QNVRSLSTT--QRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           ++VR+L  T  Q     ALFVHRDT ++N D  F+F P+N KR EA    YP GH+ AAV
Sbjct: 20  RHVRNLHKTAVQNGAGGALFVHRDTPENNPDTPFDFPPENYKRIEANCKNYPEGHKAAAV 79

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH
Sbjct: 80  LPVLDLAQRQNGWLPISAMNKVAEILQVPPMRVYEVATFYTMYNRKPVG--------KYH 131

Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
           +  CTTTPC LRNSD+ILE I+KK  + +                               
Sbjct: 132 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191

Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL PKD+E+IID+LKAGK P PGP         +SGRF  + E    +TSLT  P G
Sbjct: 192 YYEDLTPKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240


>gi|225719606|gb|ACO15649.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Caligus
           clemensi]
          Length = 238

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 108/227 (47%), Positives = 136/227 (59%), Gaps = 51/227 (22%)

Query: 28  HDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWL 86
           HD +FVHRD+ ++N  + FEF  +NKKRAEAI+SIYP GH +AA +PLLDLAQRQ+ GWL
Sbjct: 23  HDTIFVHRDSPENNEKLPFEFNAENKKRAEAIMSIYPEGHTKAATLPLLDLAQRQNGGWL 82

Query: 87  PISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNS 146
           PISAM++VAD + +P+MRVYEVATFYTMFIR P+G        +YH+  CTTTPCWLR S
Sbjct: 83  PISAMNHVADVIGMPRMRVYEVATFYTMFIRNPVG--------KYHVQVCTTTPCWLRGS 134

Query: 147 DAILEVIKKKCNMMLER-------------------------------QDLEPKDMEQII 175
           D IL+  K    +   +                               +DL  KDM +I+
Sbjct: 135 DEILQACKDNLGVSTGKMTQDKLFTISEVECLGACVNAPMVQINDDYYEDLTVKDMNEIL 194

Query: 176 DDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           DDL+ GKKPA GP         +S R+  A E +   TSLT  P GP
Sbjct: 195 DDLRGGKKPARGP---------RSSRY--AAEPFGGPTSLTEPPPGP 230


>gi|260797853|ref|XP_002593915.1| hypothetical protein BRAFLDRAFT_115771 [Branchiostoma floridae]
 gi|229279147|gb|EEN49926.1| hypothetical protein BRAFLDRAFT_115771 [Branchiostoma floridae]
          Length = 246

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 119/261 (45%), Positives = 147/261 (56%), Gaps = 55/261 (21%)

Query: 3   SNLAKLASNVVRQNVRSL--STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           S + +L+S +VRQ  R+L  S         LFVHRD+ ++N D  FEFT +N  R + II
Sbjct: 4   STVRQLSSALVRQ-TRALHRSAPAMGGGGQLFVHRDSPENNPDTPFEFTQENLNRVKLII 62

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           + YPVGHE AAVIP+LDLAQRQHGWLP+SAM+ VA+ L +P+MRVYEVATFYTMF RKP+
Sbjct: 63  NNYPVGHEAAAVIPVLDLAQRQHGWLPLSAMNKVAEILKMPRMRVYEVATFYTMFNRKPV 122

Query: 121 GEERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNMMLER--------------- 163
           G        +YH+  CTTTPC L    SD ILE IKKK  + +                 
Sbjct: 123 G--------KYHVQICTTTPCNLGGVGSDVILEAIKKKLGINVGETTKDNMFTLIEVECL 174

Query: 164 ----------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQARE 207
                           +DL   DME+I+DDL AGK P  GP         ++GRF  A E
Sbjct: 175 GACVNAPMVQINDNYYEDLTAADMEEILDDLMAGKTPKAGP---------RNGRF--ASE 223

Query: 208 AYHDMTSLTGEPHGPWDSKRD 228
               +TSLT  P GP    RD
Sbjct: 224 PLSGLTSLTTPPTGPGFGVRD 244


>gi|344252424|gb|EGW08528.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           [Cricetulus griseus]
          Length = 230

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 107/224 (47%), Positives = 135/224 (60%), Gaps = 50/224 (22%)

Query: 30  ALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPIS 89
           AL  HRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV+P+LDLAQRQ+GWLPIS
Sbjct: 18  ALEAHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPIS 77

Query: 90  AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           AM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH+  CTTTPC LR+SD+I
Sbjct: 78  AMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYHIQVCTTTPCMLRDSDSI 129

Query: 150 LEVIKKKCNMMLER-------------------------------QDLEPKDMEQIIDDL 178
           LE +++K  + +                                 +DL P D+E IID+L
Sbjct: 130 LETLQRKLGIKVGETTADKLFTLTEVECLGACVNAPMVQINDNYYEDLTPNDIEDIIDEL 189

Query: 179 KAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           KAGK P PGP         +SGRFC   E    +TSLT  P GP
Sbjct: 190 KAGKVPKPGP---------RSGRFCC--EPAGGLTSLTEPPKGP 222


>gi|339246163|ref|XP_003374715.1| cullin-4B [Trichinella spiralis]
 gi|316972042|gb|EFV55744.1| cullin-4B [Trichinella spiralis]
          Length = 1053

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 112/253 (44%), Positives = 147/253 (58%), Gaps = 57/253 (22%)

Query: 25  RLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG 84
           R +HD LFVHRDT D+N DV FEF+ +N KR EAI ++YPVG+  AA++P+LDLAQRQHG
Sbjct: 22  RRSHDQLFVHRDTPDNNADVPFEFSEENMKRVEAIKALYPVGYTSAAILPVLDLAQRQHG 81

Query: 85  WLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLR 144
           WLPISAM+ VAD + +PKMR+YEVATFYTM+ R+ +G        +YH+  CTTTPC LR
Sbjct: 82  WLPISAMNKVADVIGVPKMRIYEVATFYTMYNRQKVG--------KYHVQVCTTTPCMLR 133

Query: 145 NSDAILEVIKKKC-----------NMMLE----------------------RQDLEPKDM 171
            +D IL+ +KK+C           + M                         +DL   D+
Sbjct: 134 GADQILKHVKKECLGSDAVGENSQDFMFTVSEVECLGACANAPMMQINDDYYEDLTYDDV 193

Query: 172 EQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP---WDS--K 226
            +I ++++AGKKP  GP         QSGR   A E    +TSLT  P+GP    DS  K
Sbjct: 194 TRIFNEIRAGKKPKMGP---------QSGRL--AAEPISGLTSLTSTPYGPGKFGDSGEK 242

Query: 227 RDFCIITMIIKTC 239
           ++  II M    C
Sbjct: 243 KNTLIIPMETYNC 255


>gi|327281982|ref|XP_003225724.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Anolis carolinensis]
          Length = 289

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 112/244 (45%), Positives = 143/244 (58%), Gaps = 52/244 (21%)

Query: 12  VVRQNVRSLSTTQ--RLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHER 69
            V   VR L TT   +    ALFVHRDT ++N    F+FTP+N KR EAI++ YP GH+ 
Sbjct: 57  AVAAQVRCLHTTAACKGGGGALFVHRDTSENNPSTPFDFTPENYKRIEAIVNNYPEGHKS 116

Query: 70  AAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSIL 129
           AAVIP+LDLAQRQHGWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G        
Sbjct: 117 AAVIPVLDLAQRQHGWLPISAMNKVAEILKMPPMRVYEVATFYTMYNRKPVG-------- 168

Query: 130 QYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER-------------------------- 163
           ++H+  CTTTPC LR+SD+ILE I++K  + +                            
Sbjct: 169 KHHIQICTTTPCMLRDSDSILEAIQQKLGIKVGETTSDQLFTLTEVECLGACVNAPMVQI 228

Query: 164 -----QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGE 218
                +DL  KD+E I+D+LKAGK P PGP         ++GRF  + E    +TSLT  
Sbjct: 229 NDNYYEDLTTKDIEDILDELKAGKVPKPGP---------RNGRF--SCEPVGGLTSLTEP 277

Query: 219 PHGP 222
           P  P
Sbjct: 278 PKPP 281


>gi|119592529|gb|EAW72123.1| hCG2008184 [Homo sapiens]
          Length = 220

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 109/224 (48%), Positives = 135/224 (60%), Gaps = 50/224 (22%)

Query: 30  ALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPIS 89
           ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV+P+LDLAQRQ+GWLPIS
Sbjct: 8   ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPIS 67

Query: 90  AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           AM+ VA+ L +P +RVYEVATFYTM+ RKP+G        +YH+  CTTTPC L NSD+I
Sbjct: 68  AMNKVAEVLQVPPIRVYEVATFYTMYNRKPVG--------KYHIQACTTTPCMLPNSDSI 119

Query: 150 LEVIKKKCNMMLER-------------------------------QDLEPKDMEQIIDDL 178
           LE I+KK  + L                                 +DL  KD+E+IID+L
Sbjct: 120 LEAIQKKLGIKLGETTPDKLFTLVEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDEL 179

Query: 179 KAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           KAGK P PGP         +SGRF  + E     T LT  P GP
Sbjct: 180 KAGKIPKPGP---------RSGRF--SCEPAGGPTPLTEPPKGP 212


>gi|225719208|gb|ACO15450.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Caligus
           clemensi]
          Length = 238

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 107/227 (47%), Positives = 135/227 (59%), Gaps = 51/227 (22%)

Query: 28  HDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWL 86
           HD +FVHRD+ ++N  + FEF  +NKKRAEAI+SIYP GH +AA +PLLDLAQRQ+ GWL
Sbjct: 23  HDTIFVHRDSPENNEKLPFEFNAENKKRAEAIMSIYPEGHTKAATLPLLDLAQRQNGGWL 82

Query: 87  PISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNS 146
           PISAM++VAD + +P+MRVYEVATFYTMFIR P+G        +YH+  CTT PCWLR S
Sbjct: 83  PISAMNHVADVIGMPRMRVYEVATFYTMFIRNPVG--------KYHVQVCTTAPCWLRGS 134

Query: 147 DAILEVIKKKCNMMLER-------------------------------QDLEPKDMEQII 175
           D IL+  K    +   +                               +DL  KDM +I+
Sbjct: 135 DEILQACKDNLGVSTGKMTQDKLFTISEVECLGACVNAPMVQINDDYYEDLTVKDMNEIL 194

Query: 176 DDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           DDL+ GKKPA GP         +S R+  A E +   TSLT  P GP
Sbjct: 195 DDLRGGKKPARGP---------RSSRY--AAEPFGGPTSLTEPPPGP 230


>gi|156398110|ref|XP_001638032.1| predicted protein [Nematostella vectensis]
 gi|156225149|gb|EDO45969.1| predicted protein [Nematostella vectensis]
          Length = 202

 Score =  196 bits (498), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 106/210 (50%), Positives = 133/210 (63%), Gaps = 40/210 (19%)

Query: 18  RSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLD 77
           R+L  +  +  D LFVHRDT  +N D+ FEF   N KRA++I++ YP GHE+AAVIPLLD
Sbjct: 1   RNLHRSVPVLSDKLFVHRDTDGNNPDLPFEFNEANLKRAKSILNNYPTGHEKAAVIPLLD 60

Query: 78  LAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWC 136
           LAQRQH GWLPISAM+YVADFLN+P+MRVYEVATFYTMF R+P+G        +YH+  C
Sbjct: 61  LAQRQHDGWLPISAMNYVADFLNMPRMRVYEVATFYTMFNREPVG--------KYHVQVC 112

Query: 137 TTTPCWLRNSDAILEVIKKKCNM--------------------------MLE-----RQD 165
           TTTPC LRN+D +L+ +K K  +                          M++      +D
Sbjct: 113 TTTPCQLRNADDLLDTLKSKLGIKEGETSKDGMFTLTVVECLGACVNAPMMQINDNYYED 172

Query: 166 LEPKDMEQIIDDLKAGKKPAPGPSGYTSGI 195
           L  KD E+IIDDL AG+ P PGP   TS I
Sbjct: 173 LSMKDAEEIIDDLIAGRTPKPGPRYSTSNI 202


>gi|308496289|ref|XP_003110332.1| hypothetical protein CRE_05617 [Caenorhabditis remanei]
 gi|308243673|gb|EFO87625.1| hypothetical protein CRE_05617 [Caenorhabditis remanei]
          Length = 254

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 115/262 (43%), Positives = 147/262 (56%), Gaps = 66/262 (25%)

Query: 8   LASNVVRQNVR-SLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVG 66
           L SNV+ Q  R     T+R     L VHRDTK++NL+VKF+FTP+N+ R +AI+ IYP G
Sbjct: 3   LTSNVMLQASRIGGMITKRGGATGLMVHRDTKENNLNVKFKFTPENEDRIKAIVDIYPEG 62

Query: 67  HERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIK 126
           H+  A+IPLLDLAQRQHGWLPISAMH VA  L +P+MR YEVATFYTMF R+P+G     
Sbjct: 63  HKAGALIPLLDLAQRQHGWLPISAMHEVARILEVPRMRAYEVATFYTMFNRQPVG----- 117

Query: 127 SILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM--------------------------M 160
              +Y L  C TTPC LR ++ I E I+KK  +                          M
Sbjct: 118 ---KYFLQVCATTPCMLRGAETITETIEKKLGIHAGETTKDGLFTLAEVECLGACVNAPM 174

Query: 161 LE-----RQDLEPK---------------DMEQIIDDLKAGKKPAPGPSGYTSGIGSQSG 200
           ++      +DL PK               D+ +I+DDLKAG+KPA GP         +SG
Sbjct: 175 IQINDDYFEDLTPKVFFLFELCFFISIIQDVHEILDDLKAGRKPAAGP---------RSG 225

Query: 201 RFCQAREAYHDMTSLTGEPHGP 222
           R   A E + ++TSL   P GP
Sbjct: 226 RL--AAEPFGELTSLKETPPGP 245


>gi|350399269|ref|XP_003485475.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Bombus impatiens]
          Length = 243

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 105/239 (43%), Positives = 135/239 (56%), Gaps = 49/239 (20%)

Query: 15  QNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIP 74
           +N R L T+     D LF+HRD++ DN  + FEF   NKKR  A++ IYP GH+R A+IP
Sbjct: 15  KNARGLHTSTIRISDQLFIHRDSEVDNPSIPFEFNEANKKRIAALLKIYPEGHKRGAMIP 74

Query: 75  LLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLN 134
           LLDLAQRQHGWLPISAMH VA+ L++P+MRVYEVATFYTMF R+P+G        +YH+ 
Sbjct: 75  LLDLAQRQHGWLPISAMHKVAEILDVPRMRVYEVATFYTMFNRRPMG--------KYHVQ 126

Query: 135 WCTTTPCWLRNSDAILEVIKKKCNMMLER------------------------------- 163
            CT TPCWLR+SD+I+E + K  N  +                                 
Sbjct: 127 ICTCTPCWLRDSDSIVEAVTKATNCKVGEMSADKLFTVSEVECLGACANAPMFQVNDDYY 186

Query: 164 QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           +DL P+    II+  K G++P PGP          S RF  A +    +TSLT  P GP
Sbjct: 187 EDLTPESATAIINAFKKGERPPPGP--------QNSPRF--AADPASGLTSLTSPPPGP 235


>gi|341879155|gb|EGT35090.1| hypothetical protein CAEBREN_09508 [Caenorhabditis brenneri]
          Length = 253

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 115/261 (44%), Positives = 146/261 (55%), Gaps = 65/261 (24%)

Query: 8   LASNVVRQNVR-SLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVG 66
           LASNV+ Q  R     T+R     L VHRDTK++NL+VKF+FT +N  R +AI+ IYP G
Sbjct: 3   LASNVMLQASRLGGMITKRGGATGLMVHRDTKENNLNVKFKFTQENMDRIKAIMDIYPEG 62

Query: 67  HERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIK 126
           H+  A+IPLLDLAQRQHGWLPISAMH VA  L +P+MR YEVATFYTMF R+P+G     
Sbjct: 63  HKAGALIPLLDLAQRQHGWLPISAMHEVAKILEVPRMRAYEVATFYTMFNRQPVG----- 117

Query: 127 SILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM--------------------------M 160
              +Y L  C TTPC LR ++ I E I+KK  +                          M
Sbjct: 118 ---KYFLQVCATTPCMLRGAETITETIEKKLGIHAGETTKDGLFTLAEVECLGACVNAPM 174

Query: 161 LE-----RQDLEPK--------------DMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGR 201
           ++      +DL PK              D+ +I+DDLKAG+KPA GP         +SGR
Sbjct: 175 IQINDDYFEDLTPKVLFLFEFIISNVFQDVHEILDDLKAGRKPAAGP---------RSGR 225

Query: 202 FCQAREAYHDMTSLTGEPHGP 222
              A E + ++TSL   P GP
Sbjct: 226 L--AAEPFGELTSLKEAPPGP 244


>gi|221127644|ref|XP_002160547.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Hydra magnipapillata]
          Length = 243

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 107/225 (47%), Positives = 132/225 (58%), Gaps = 50/225 (22%)

Query: 29  DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPI 88
           D LFVHRDT+ +N +  FEFT +NKKRA  IIS YP GHE AA IPLLDL QRQ GW+P+
Sbjct: 30  DKLFVHRDTEYNNANTPFEFTEENKKRASVIISNYPKGHESAATIPLLDLVQRQLGWVPL 89

Query: 89  SAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDA 148
           S M+YVA  L +P+MRVYEVATFYTMF R+P+G        +YH+  CTTTPC L NSD+
Sbjct: 90  SGMNYVAKMLQMPEMRVYEVATFYTMFNREPVG--------KYHIQICTTTPCMLCNSDS 141

Query: 149 ILEVIKKKCNM--------------------------MLE-----RQDLEPKDMEQIIDD 177
           I+ VIK+K  +                          M++      +DL+P DM +II+ 
Sbjct: 142 IMSVIKEKLQINPGETTKDKMFTLSEVECLGACVNAPMVQINDNFYEDLKPSDMVEIIES 201

Query: 178 LKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           L  G  P PGP         +SGRF  A E    +TSLT  P GP
Sbjct: 202 LAKGIIPKPGP---------RSGRF--ASEPAGGLTSLTSPPRGP 235


>gi|339265149|ref|XP_003366301.1| NADH dehydrogenase, E subunit [Trichinella spiralis]
 gi|316965144|gb|EFV49951.1| NADH dehydrogenase, E subunit [Trichinella spiralis]
          Length = 241

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 105/231 (45%), Positives = 137/231 (59%), Gaps = 52/231 (22%)

Query: 25  RLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG 84
           R +HD LFVHRDT D+N DV FEF+ +N KR EAI ++YPVG+  AA++P+LDLAQRQHG
Sbjct: 22  RRSHDQLFVHRDTPDNNADVPFEFSEENMKRVEAIKALYPVGYTSAAILPVLDLAQRQHG 81

Query: 85  WLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLR 144
           WLPISAM+ VAD + +PKMR+YEVATFYTM+ R+ +G        +YH+  CTTTPC LR
Sbjct: 82  WLPISAMNKVADVIGVPKMRIYEVATFYTMYNRQKVG--------KYHVQVCTTTPCMLR 133

Query: 145 NSDAILEVIKKKC-----------NMMLE----------------------RQDLEPKDM 171
            +D IL+ +KK+C           + M                         +DL   D+
Sbjct: 134 GADQILKHVKKECLGSDAVGENSQDFMFTVSEVECLGACANAPMMQINDDYYEDLTYDDV 193

Query: 172 EQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
            +I  +++AGKKP  GP         QSGR   A E    +TSLT  P+GP
Sbjct: 194 TRIFSEIRAGKKPKMGP---------QSGRL--AAEPISGLTSLTSTPYGP 233


>gi|308321298|gb|ADO27801.1| mitochondrial NADH dehydrogenase flavoprotein 2 [Ictalurus
           furcatus]
          Length = 244

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 112/246 (45%), Positives = 145/246 (58%), Gaps = 52/246 (21%)

Query: 3   SNLAKLASNVVRQNVRSLSTTQ-RLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIIS 61
           S L  + S+  RQ VRSL  +  R     +FVHRDT ++N D  FEFTP+N KR EAII+
Sbjct: 5   SVLRSVVSHAGRQ-VRSLHRSAIRAGAGGVFVHRDTPENNPDTPFEFTPENMKRVEAIIT 63

Query: 62  IYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIG 121
            YP GH++AA IP+LDLAQRQHGWLPISAM+ VA+ L +  MRVYEVATFYTMF R+P+G
Sbjct: 64  NYPEGHKQAATIPVLDLAQRQHGWLPISAMNKVAEILEVSPMRVYEVATFYTMFNRQPVG 123

Query: 122 EERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER------------------ 163
                   +YH+  CTTTPC L +SD+IL+ I+ K  + +                    
Sbjct: 124 --------KYHIQICTTTPCMLCDSDSILQAIQNKLGIEVGETTADGLFTLIEVECLGAC 175

Query: 164 -------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYH 210
                        +DL+P D+E IID+LKAG+ P PGP         ++GRF  + E   
Sbjct: 176 VNAPMVQINDNYYEDLKPSDIEHIIDELKAGRVPPPGP---------RNGRF--SCEPAG 224

Query: 211 DMTSLT 216
            +TSLT
Sbjct: 225 GLTSLT 230


>gi|340727841|ref|XP_003402243.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Bombus terrestris]
          Length = 250

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 105/239 (43%), Positives = 134/239 (56%), Gaps = 49/239 (20%)

Query: 15  QNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIP 74
           +N R L T+     D LF+HRD++ DN  + FEF   NKKR  A++ IYP GH+R A+IP
Sbjct: 22  KNARGLYTSTIRISDQLFIHRDSEVDNPSIPFEFNEANKKRIAALLKIYPEGHKRGAMIP 81

Query: 75  LLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLN 134
           LLDLAQRQHGWLPISAMH VA+ L++P MRVYEVATFYTMF R+P+G        +YH+ 
Sbjct: 82  LLDLAQRQHGWLPISAMHKVAEILDVPHMRVYEVATFYTMFNRRPMG--------KYHVQ 133

Query: 135 WCTTTPCWLRNSDAILEVIKKKCNMMLER------------------------------- 163
            CT TPCWLR+SD+I+E + K  N  +                                 
Sbjct: 134 ICTCTPCWLRDSDSIVEAVVKATNCKVGEMSADKLFTISEVECLGACANAPMFQVNDDYY 193

Query: 164 QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           +DL P+    II+  K G++P PGP          S RF  A +    +TSLT  P GP
Sbjct: 194 EDLTPESATAIINAFKKGERPPPGP--------QNSPRF--AADPASGLTSLTSPPPGP 242


>gi|170068586|ref|XP_001868924.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Culex
           quinquefasciatus]
 gi|167864587|gb|EDS27970.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Culex
           quinquefasciatus]
          Length = 170

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 94/159 (59%), Positives = 112/159 (70%), Gaps = 9/159 (5%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML++   L  + +R N R + +T     D LFVHRDT +DN  + FEFT +NKKR  AI+
Sbjct: 1   MLASSKVLLQSTLR-NFRGICSTSIRMSDNLFVHRDTPEDNPSIPFEFTEENKKRVSAIL 59

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           +IYP GH+R A+IPLLDLAQRQHGWLPISAMH VAD L LP MRVYEVATFYTMF+RKP 
Sbjct: 60  NIYPEGHKRGAMIPLLDLAQRQHGWLPISAMHKVADILGLPNMRVYEVATFYTMFMRKPT 119

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           G         YH+  CTTTPCWLR SD ++ V KKK  +
Sbjct: 120 G--------TYHIQVCTTTPCWLRGSDEVMNVCKKKLGI 150


>gi|341886788|gb|EGT42723.1| hypothetical protein CAEBREN_09098 [Caenorhabditis brenneri]
          Length = 253

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 114/261 (43%), Positives = 145/261 (55%), Gaps = 65/261 (24%)

Query: 8   LASNVVRQNVR-SLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVG 66
           L SNV+ Q  R     T+R     L VHRDTK++NL+VKF+FT +N  R +AI+ IYP G
Sbjct: 3   LTSNVMLQASRLGGMITKRGGATGLMVHRDTKENNLNVKFKFTQENMDRIKAIMDIYPEG 62

Query: 67  HERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIK 126
           H+  A+IPLLDLAQRQHGWLPISAMH VA  L +P+MR YEVATFYTMF R+P+G     
Sbjct: 63  HKAGALIPLLDLAQRQHGWLPISAMHEVAKILEVPRMRAYEVATFYTMFNRQPVG----- 117

Query: 127 SILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM--------------------------M 160
              +Y L  C TTPC LR ++ I E I+KK  +                          M
Sbjct: 118 ---KYFLQVCATTPCMLRGAETITETIEKKLGIHAGETTKDGLFTLAEVECLGACVNAPM 174

Query: 161 LE-----RQDLEPK--------------DMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGR 201
           ++      +DL PK              D+ +I+DDLKAG+KPA GP         +SGR
Sbjct: 175 IQINDDYFEDLTPKVLFLFQFIISKFFQDVHEILDDLKAGRKPAAGP---------RSGR 225

Query: 202 FCQAREAYHDMTSLTGEPHGP 222
              A E + ++TSL   P GP
Sbjct: 226 L--AAEPFGELTSLKEAPPGP 244


>gi|241565641|ref|XP_002402024.1| NADH-ubiquinone dehydrogenase, putative [Ixodes scapularis]
 gi|215499938|gb|EEC09432.1| NADH-ubiquinone dehydrogenase, putative [Ixodes scapularis]
          Length = 149

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/134 (64%), Positives = 104/134 (77%), Gaps = 8/134 (5%)

Query: 26  LNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGW 85
           L  DALFVHRDT  +N +VKFEFTP+N KRAE++ SIYP GH  AAVIPLLDLAQRQHGW
Sbjct: 4   LRSDALFVHRDTDQNNANVKFEFTPENLKRAESLTSIYPDGHRAAAVIPLLDLAQRQHGW 63

Query: 86  LPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRN 145
           LP++AMHYVAD+L +P+MRVYEVATFYTMF R P+G        +YH+  CTTTPC LR 
Sbjct: 64  LPLTAMHYVADYLGMPRMRVYEVATFYTMFQRNPVG--------KYHVQVCTTTPCMLRG 115

Query: 146 SDAILEVIKKKCNM 159
           ++ I  VI+KK  +
Sbjct: 116 AEDIQAVIEKKLGI 129


>gi|226466931|emb|CAX75946.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
           japonicum]
          Length = 248

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/225 (47%), Positives = 130/225 (57%), Gaps = 49/225 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           LFVHR+T D+N +  FEF+ +NKKR   IIS YP  H+ AA+IP LDLAQRQHGWLPISA
Sbjct: 32  LFVHRETPDNNSNTPFEFSAENKKRLNVIISNYPPAHKSAAIIPALDLAQRQHGWLPISA 91

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLR--NSDA 148
           M+ VA+ LN+P MRVYEVATFYTMF R+P+G        +YH+  CTTTPC L    S+A
Sbjct: 92  MNKVAEILNVPPMRVYEVATFYTMFNREPVG--------KYHIQICTTTPCMLGGVGSEA 143

Query: 149 ILEVIKKKCNM--------------------------MLE-----RQDLEPKDMEQIIDD 177
           IL  +KK   +                          ML+      +DL  +D  +II +
Sbjct: 144 ILNTLKKTLGIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYEDLTAEDTVRIIKE 203

Query: 178 LKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           +KAGKKP PGP         Q GRF  A E    +TSL  EP GP
Sbjct: 204 IKAGKKPKPGPQ------NGQGGRF--ASEPKGGLTSLNTEPKGP 240


>gi|226466927|emb|CAX75944.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
           japonicum]
          Length = 248

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/225 (47%), Positives = 130/225 (57%), Gaps = 49/225 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           LFVHR+T D+N +  FEF+ +NKKR   IIS YP  H+ AA+IP LDLAQRQHGWLPISA
Sbjct: 32  LFVHRETPDNNSNTPFEFSAENKKRLNVIISNYPPAHKSAAIIPALDLAQRQHGWLPISA 91

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLR--NSDA 148
           M+ VA+ LN+P MRVYEVATFYTMF R+P+G        +YH+  CTTTPC L    S+A
Sbjct: 92  MNKVAEILNVPPMRVYEVATFYTMFNREPVG--------KYHIQICTTTPCMLGGVGSEA 143

Query: 149 ILEVIKKKCNM--------------------------MLE-----RQDLEPKDMEQIIDD 177
           IL  +KK   +                          ML+      +DL  +D  +II +
Sbjct: 144 ILNTLKKTLGIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYEDLTAEDTVRIIKE 203

Query: 178 LKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           +KAGKKP PGP         Q GRF  A E    +TSL  EP GP
Sbjct: 204 IKAGKKPKPGPQ------SGQGGRF--ASEPKGGLTSLNTEPKGP 240


>gi|226466923|emb|CAX75942.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
           japonicum]
 gi|226466925|emb|CAX75943.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
           japonicum]
 gi|226466929|emb|CAX75945.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
           japonicum]
 gi|226466933|emb|CAX75947.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
           japonicum]
          Length = 248

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/225 (47%), Positives = 130/225 (57%), Gaps = 49/225 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           LFVHR+T D+N +  FEF+ +NKKR   IIS YP  H+ AA+IP LDLAQRQHGWLPISA
Sbjct: 32  LFVHRETPDNNSNTPFEFSAENKKRLNVIISNYPPAHKSAAIIPALDLAQRQHGWLPISA 91

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLR--NSDA 148
           M+ VA+ LN+P MRVYEVATFYTMF R+P+G        +YH+  CTTTPC L    S+A
Sbjct: 92  MNKVAEILNVPPMRVYEVATFYTMFNREPVG--------KYHIQICTTTPCMLGGVGSEA 143

Query: 149 ILEVIKKKCNM--------------------------MLE-----RQDLEPKDMEQIIDD 177
           IL  +KK   +                          ML+      +DL  +D  +II +
Sbjct: 144 ILNTLKKTLGIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYEDLTAEDTVRIIKE 203

Query: 178 LKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           +KAGKKP PGP         Q GRF  A E    +TSL  EP GP
Sbjct: 204 IKAGKKPKPGPQ------SGQGGRF--ASEPKGGLTSLNTEPKGP 240


>gi|307192775|gb|EFN75865.1| Probable NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial [Harpegnathos saltator]
          Length = 216

 Score =  182 bits (462), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 99/222 (44%), Positives = 128/222 (57%), Gaps = 49/222 (22%)

Query: 32  FVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAM 91
           F HRD++ DN ++ FEF   NKKR +A+++IYP GH+R A+IPLLDLAQRQHGWLPISAM
Sbjct: 5   FQHRDSEHDNPNIPFEFNEANKKRIKALLAIYPEGHKRGAMIPLLDLAQRQHGWLPISAM 64

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
           H VA+ L+LP+MRVYEVATFYTMF R+P+G        +YH+  CT TPCWLR+SD+I+E
Sbjct: 65  HKVAEILDLPRMRVYEVATFYTMFNRRPMG--------KYHVQICTCTPCWLRDSDSIVE 116

Query: 152 VIKKKCNMMLER-------------------------------QDLEPKDMEQIIDDLKA 180
            + K  N  +                                 +DL P+    II+  K 
Sbjct: 117 AVTKATNCEIGATSADKLFTISEVECLGACANAPMFQVNDDYYEDLTPESATVIINAFKK 176

Query: 181 GKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           G++P  GP   T        RF  A +    +TSLT  P GP
Sbjct: 177 GERPPAGPQNST--------RF--AADPAGGLTSLTTPPPGP 208


>gi|307184300|gb|EFN70758.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           [Camponotus floridanus]
          Length = 323

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 98/227 (43%), Positives = 128/227 (56%), Gaps = 49/227 (21%)

Query: 27  NHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWL 86
           N     +HRD++ DN ++ FEF   NKKR +AI++IYP GH+R A+IPLLDLAQRQHGWL
Sbjct: 107 NKKEKLMHRDSEHDNPNIPFEFDEANKKRIKAILAIYPEGHKRGAMIPLLDLAQRQHGWL 166

Query: 87  PISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNS 146
           PISAMH VA+ L +P+MRVYEVATFYTMF RKP+G        +YH+  CT TPCWLR+S
Sbjct: 167 PISAMHKVAEILEVPRMRVYEVATFYTMFNRKPMG--------KYHVQICTCTPCWLRDS 218

Query: 147 DAILEVIKKKCNMMLE-------------------------------RQDLEPKDMEQII 175
           DAI++ +    N  +                                 +DL P+    +I
Sbjct: 219 DAIVKAVTAATNCEIGGTSADKLFTISEVECLGACANAPMFQVNDDYYEDLTPETATAVI 278

Query: 176 DDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           +  K G++P PGP          + RF  A +    +TSLT  P GP
Sbjct: 279 NAFKKGERPPPGP--------QNAPRF--AADPAGGLTSLTSPPPGP 315


>gi|256083931|ref|XP_002578188.1| NADH-ubiquinone oxidoreductase [Schistosoma mansoni]
 gi|353232706|emb|CCD80061.1| putative nadh-ubiquinone oxidoreductase 24 kD subunit [Schistosoma
           mansoni]
          Length = 248

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/225 (44%), Positives = 132/225 (58%), Gaps = 49/225 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           LFVHR+T+++N +  FEF+ +NKKR + IIS YP  H+ AA+IP LDLAQRQHGWLPISA
Sbjct: 32  LFVHRETRENNSNTPFEFSAENKKRLDVIISNYPPAHKAAAIIPALDLAQRQHGWLPISA 91

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLR--NSDA 148
           M+ VA+ LN+P+MRVYEVATFYTMF R+P+G        +YH+  CTTTPC L    S+ 
Sbjct: 92  MNKVAEILNVPQMRVYEVATFYTMFNREPVG--------KYHIQICTTTPCMLGGVGSEV 143

Query: 149 ILEVIKKKCNM--------------------------MLE-----RQDLEPKDMEQIIDD 177
           IL  +KK   +                          M++      +DL  +D  +I+++
Sbjct: 144 ILNALKKNLGIEPGQTTPDKMFTLTEVECLGACVNAPMMQINDDYYEDLTAEDTIRILEE 203

Query: 178 LKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           +KAGKKP PGP         Q GRF  A E    +TSL  EP  P
Sbjct: 204 IKAGKKPKPGPQ------SGQGGRF--ASEPKGGLTSLNTEPKSP 240


>gi|336380351|gb|EGO21504.1| NdufV2, NADH dehydrogenase 24 kd subunit [Serpula lacrymans var.
           lacrymans S7.9]
          Length = 248

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/246 (44%), Positives = 137/246 (55%), Gaps = 56/246 (22%)

Query: 18  RSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLD 77
           R++STT   + DALFVHRDT  +N  + FEFT DN KRAE IIS YP  +++AAVIPLLD
Sbjct: 21  RNISTTSSRHSDALFVHRDTSYNNPKIPFEFTSDNIKRAEEIISRYPPQYKKAAVIPLLD 80

Query: 78  LAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWC 136
           L QRQ+ GW  IS M+YVA FL +P MRVYEVATFYTMF R+PIGE  ++         C
Sbjct: 81  LGQRQNKGWTSISVMNYVAKFLEMPPMRVYEVATFYTMFNREPIGENFVQ--------VC 132

Query: 137 TTTPCWLRNSDAILE---------------------VIKKKCN-------MMLER----Q 164
           TTTPC LR S  IL+                     VI+ +C        MM+      +
Sbjct: 133 TTTPCMLRGSTEILDTVCGHLGGIKPGETTKDGKFTVIEVECQGACSNAPMMVINDDFYE 192

Query: 165 DLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPWD 224
           DL      +I+D    G+KP PGP         QSGR+     A   +TSLT +P+GP  
Sbjct: 193 DLTSATTTKILDAFTKGQKPKPGP---------QSGRYTSENSA--GLTSLTSKPYGPG- 240

Query: 225 SKRDFC 230
              +FC
Sbjct: 241 ---EFC 243


>gi|291242347|ref|XP_002741069.1| PREDICTED: mCG9061-like, partial [Saccoglossus kowalevskii]
          Length = 178

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 93/186 (50%), Positives = 113/186 (60%), Gaps = 39/186 (20%)

Query: 34  HRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHY 93
           HRDT ++N    F+FTP+N KR + II  YP GH+ AAVIP+LDLAQRQHGWLPISAMH 
Sbjct: 1   HRDTPENNPGTPFKFTPENLKRVKDIIGNYPEGHQAAAVIPVLDLAQRQHGWLPISAMHE 60

Query: 94  VADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVI 153
           VA  L + K+RVYEVATFYTMF R+P+G        +YH+  CTTTPC LR+SD IL+VI
Sbjct: 61  VAGILEMSKIRVYEVATFYTMFNREPVG--------KYHIQICTTTPCMLRDSDGILDVI 112

Query: 154 KKKCNMMLER-------------------------------QDLEPKDMEQIIDDLKAGK 182
           K K  + +                                 +DL  KDME+IIDDLKA +
Sbjct: 113 KNKLGIGVGETTKDNMFTLGEVECLGACVNAPMVQINDNYYEDLTTKDMEEIIDDLKANR 172

Query: 183 KPAPGP 188
            P  GP
Sbjct: 173 TPKAGP 178


>gi|26353142|dbj|BAC40201.1| unnamed protein product [Mus musculus]
          Length = 192

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/202 (47%), Positives = 121/202 (59%), Gaps = 50/202 (24%)

Query: 52  NKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATF 111
           N KR EAI+  YP GH+ AAV+P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATF
Sbjct: 2   NYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATF 61

Query: 112 YTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER-------- 163
           YTM+ RKP+G        +YH+  CTTTPC LR+SD+ILE +++K  + +          
Sbjct: 62  YTMYNRKPVG--------KYHIQVCTTTPCMLRDSDSILETLQRKLGIKVGETTPDKLFT 113

Query: 164 -----------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSG 200
                                  +DL PKD+E+IID+LKAGK P PGP         +SG
Sbjct: 114 LIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGKVPKPGP---------RSG 164

Query: 201 RFCQAREAYHDMTSLTGEPHGP 222
           RFC   E    +TSLT  P GP
Sbjct: 165 RFCC--EPAGGLTSLTEPPKGP 184


>gi|323508176|emb|CBQ68047.1| probable NADH-ubiquinone oxidoreductase 24 kDa subunit,
           mitochondrial precursor [Sporisorium reilianum SRZ2]
          Length = 268

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 108/256 (42%), Positives = 140/256 (54%), Gaps = 55/256 (21%)

Query: 3   SNLAKLASNVVR--QNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           S+L  +AS   R     RSL+T+   + DALFVHR+T  +N D+ FEF  +N K A+ II
Sbjct: 23  SSLFAVASGSSRTISARRSLTTSAARSSDALFVHRNTDYNNPDIPFEFNAENAKMAQEII 82

Query: 61  SIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           S YP  +++AAVIPLLDL QRQ+ GW+ IS M+YVA  L++P MRVYEVATFYTMF R+P
Sbjct: 83  SHYPSQYKKAAVIPLLDLGQRQNSGWVSISVMNYVAKLLDMPPMRVYEVATFYTMFNREP 142

Query: 120 IGEERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNMMLER-------------- 163
           +G        Q+ L  CTTTPC L    S  ILE ++ K  +   +              
Sbjct: 143 VG--------QFFLQLCTTTPCMLGGCGSTKILEALEDKLGIKAGQTTKDKKFTLVEVEC 194

Query: 164 -----------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAR 206
                            +DL P+ M  IID L +G+K  PGP         QSGR   + 
Sbjct: 195 LGACANAPMIQINDDYYEDLTPESMVNIIDKLASGQKVKPGP---------QSGR--HSS 243

Query: 207 EAYHDMTSLTGEPHGP 222
           EA    T+LT EP+GP
Sbjct: 244 EAATGRTALTSEPYGP 259


>gi|409082596|gb|EKM82954.1| NdufV2, NADH dehydrogenase 24 kd subunit [Agaricus bisporus var.
           burnettii JB137-S8]
          Length = 246

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 112/264 (42%), Positives = 145/264 (54%), Gaps = 57/264 (21%)

Query: 1   MLSNLAK-LASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAI 59
           MLS L + LAS+      R +STT R   +ALF HRDT  +N  + FEF  +N KRA+AI
Sbjct: 1   MLSRLPRSLASSSKVAQRRFISTTTRRRSEALFAHRDTTYNNPKIPFEFNAENVKRAQAI 60

Query: 60  ISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118
           I+ YP  +++AAVIPLLDLAQRQ +GW  ISAM++VA  L +P MRVYEVATFYTMF R+
Sbjct: 61  IAKYPPQYKKAAVIPLLDLAQRQNNGWTSISAMNHVATVLEMPPMRVYEVATFYTMFNRE 120

Query: 119 PIGEERIKSILQYHLNWCTTTPCWLRNSDAILE---------------------VIKKKC 157
           PIG+  ++         CTTTPC LR S  IL+                     VI+ +C
Sbjct: 121 PIGKNFVQ--------VCTTTPCVLRGSTEILDTVCNELGGIKPGQTTKDGKFTVIEVEC 172

Query: 158 N-------MMLER----QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAR 206
                   MM+      +DL P   ++I+D    G KP PGP         QSGR     
Sbjct: 173 QGACSNAPMMVVGDDFYEDLTPATTKKILDAFSRGDKPKPGP---------QSGRLTSEN 223

Query: 207 EAYHDMTSLTGEPHGPWDSKRDFC 230
            A   +T+LT +P+GP     +FC
Sbjct: 224 SA--GLTALTSKPYGPG----EFC 241


>gi|426200463|gb|EKV50387.1| NdufV2 NADH dehydrogenase subunit [Agaricus bisporus var. bisporus
           H97]
          Length = 246

 Score =  173 bits (438), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 114/264 (43%), Positives = 146/264 (55%), Gaps = 57/264 (21%)

Query: 1   MLSNLAK-LASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAI 59
           MLS L + LAS+      R +STT R   +ALF HRDT  +N  + FEF  +N KRA+AI
Sbjct: 1   MLSRLPRTLASSSRVAQRRFISTTTRRRSEALFAHRDTTYNNPKIPFEFNAENVKRAQAI 60

Query: 60  ISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118
           I+ YP  +++AAVIPLLDLAQRQ +GW  ISAM++VA  L +P MRVYEVATFYTMF R+
Sbjct: 61  IAKYPPQYKKAAVIPLLDLAQRQNNGWTSISAMNHVATVLEMPPMRVYEVATFYTMFNRE 120

Query: 119 PIGEERIKSILQYHLNWCTTTPCWLRNSDAILE---------------------VIKKKC 157
           PIG    K+ +Q     CTTTPC LR S  IL+                     VI+ +C
Sbjct: 121 PIG----KNFVQV----CTTTPCVLRGSTEILDTVCKELGGIKPGQTTKDGKFTVIEVEC 172

Query: 158 N-------MMLER----QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAR 206
                   MM+      +DL P   ++I+D    G KP PGP         QSGR     
Sbjct: 173 QGACSNAPMMVVGDDFYEDLTPATTKKILDAFSRGDKPKPGP---------QSGRLTSEN 223

Query: 207 EAYHDMTSLTGEPHGPWDSKRDFC 230
            A   +T+LT +P+GP     +FC
Sbjct: 224 SA--GLTALTSKPYGPG----EFC 241


>gi|167535370|ref|XP_001749359.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772225|gb|EDQ85880.1| predicted protein [Monosiga brevicollis MX1]
          Length = 262

 Score =  173 bits (438), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 103/251 (41%), Positives = 139/251 (55%), Gaps = 52/251 (20%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           M +   ++ + V  Q  R L     L  D LFVHRDT+ +N  + FEFTP+N K+ EAI 
Sbjct: 19  MRAQAGRVGTAVAAQR-RLLHAAAPLRGDKLFVHRDTEKNNSSIAFEFTPENMKKVEAIT 77

Query: 61  SIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           + +P GH  AA IP+LDLAQRQ+ GWLPISAM  VA  L +PK+RVYEVA+FYTMF R P
Sbjct: 78  AQFPPGHRAAACIPVLDLAQRQYGGWLPISAMDEVARVLQMPKIRVYEVASFYTMFNRDP 137

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM------------MLE----- 162
           +G        +YH+  CTTTPC +R +  I E ++KK  +            +LE     
Sbjct: 138 VG--------KYHVQVCTTTPCMVRGAYNIFEHLQKKLGLHNGETSEDGMFTLLEVECLG 189

Query: 163 --------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREA 208
                          +DLE  D+++II+ L+ G+ P PGP         Q+GR  +A E 
Sbjct: 190 ACSNAPMIQINDEYYEDLELADVDRIIEALRKGETPKPGP---------QNGR--KAAEP 238

Query: 209 YHDMTSLTGEP 219
              +T+LT EP
Sbjct: 239 LGGLTALTSEP 249


>gi|405969458|gb|EKC34429.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial,
           partial [Crassostrea gigas]
          Length = 214

 Score =  173 bits (438), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 102/227 (44%), Positives = 130/227 (57%), Gaps = 49/227 (21%)

Query: 34  HRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHY 93
           HRD+ ++N +  FEFT +N KRA+ II  YP GH+ AAVIPLLDLAQRQHGWLPISAMH 
Sbjct: 1   HRDSPENNPNTPFEFTQENIKRADVIIGNYPEGHQAAAVIPLLDLAQRQHGWLPISAMHK 60

Query: 94  VADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLR--NSDAILE 151
           VA+ L++PKMRVYEVATFYTMF RKP+G        +Y +  CTTTPC L    SD IL+
Sbjct: 61  VAEMLDMPKMRVYEVATFYTMFNRKPVG--------KYFVQICTTTPCILGGVGSDVILK 112

Query: 152 VIKKKCNM------------MLER-------------------QDLEPKDMEQIIDDLKA 180
            I++   +            +LE                    +DL   D+ +I++++K 
Sbjct: 113 AIEENLGIKPGEMTQDGMFSLLEVECLGACVNAPMVQINDDYFEDLTVDDINKILNEIKQ 172

Query: 181 GKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPWDSKR 227
           GKKP PGP         Q+ RF  A E    +TSL+  P GP    R
Sbjct: 173 GKKPTPGPQ------SGQNRRF--ASEPKGGLTSLSEPPTGPGFGVR 211


>gi|402225707|gb|EJU05768.1| hypothetical protein DACRYDRAFT_75147 [Dacryopinax sp. DJM-731 SS1]
          Length = 242

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 105/239 (43%), Positives = 136/239 (56%), Gaps = 51/239 (21%)

Query: 18  RSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLD 77
           R+ STT+    DALFVHRDT  +N  + F+FTP+N K A+ IIS YP  +++AAVIPLLD
Sbjct: 16  RTFSTTRIARSDALFVHRDTPYNNSKIPFKFTPENLKLAQEIISHYPSQYKKAAVIPLLD 75

Query: 78  LAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWC 136
           L QRQ+ GW  IS M+YVA  L+LP MRVYEVATFYTMF R+PIG+  ++         C
Sbjct: 76  LGQRQNKGWTSISVMNYVAQLLDLPPMRVYEVATFYTMFNREPIGDNFVQ--------VC 127

Query: 137 TTTPCWLRNSDAILEVIKK--------------------KCN-------MMLE----RQD 165
           TTTPC LR+   IL+VIK                     +C        MM+      +D
Sbjct: 128 TTTPCMLRDGYKILDVIKDHLKIGVGETTKDGKFTLVEVECQGACSNAPMMVVGDDFYED 187

Query: 166 LEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPWD 224
           L P+  ++I+D    G+KP PGP         QSGR      A   +TSLT +P+GP +
Sbjct: 188 LTPETTKKILDAFAKGQKPKPGP---------QSGRHTSENSA--GLTSLTSKPYGPGE 235


>gi|299753881|ref|XP_001833598.2| NADH-ubiquinone oxidoreductase subunit [Coprinopsis cinerea
           okayama7#130]
 gi|298410506|gb|EAU88143.2| NADH-ubiquinone oxidoreductase subunit [Coprinopsis cinerea
           okayama7#130]
          Length = 245

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/264 (41%), Positives = 142/264 (53%), Gaps = 56/264 (21%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           MLS++A+  +  V  N R LSTT     DALFVHRDT  +N  + FEF   N KRA+ II
Sbjct: 1   MLSSIARRTAPRVALNRRLLSTTPSRRSDALFVHRDTPYNNPKIPFEFDAANMKRAQEII 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           + YP  +++AAVIPLLDL QRQ+ GW  IS M+YVA  L +P MRVYEVATFYTMF R+P
Sbjct: 61  ARYPPQYKKAAVIPLLDLGQRQNKGWTSISVMNYVAKLLEMPAMRVYEVATFYTMFNREP 120

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK---------------------KCN 158
           IG+  I+         CTTTPC L  S  IL  I +                     +C 
Sbjct: 121 IGQNFIQ--------LCTTTPCMLCGSTNILNTISEHLGGIKPGQTTKDGKFTLVEVECQ 172

Query: 159 -------MMLER----QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQARE 207
                  MM+      +DL P+  ++I+D    G+KP PGP         QS R      
Sbjct: 173 GACSNAPMMVVNDDYYEDLTPESTKKILDAFARGEKPKPGP---------QSSRHTSENS 223

Query: 208 AYHDMTSLTGEPHGPWDSKRDFCI 231
           A   +T+LTG+P+GP     +FC+
Sbjct: 224 A--GLTNLTGKPYGPG----EFCL 241


>gi|391342448|ref|XP_003745532.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Metaseiulus occidentalis]
          Length = 238

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/253 (44%), Positives = 156/253 (61%), Gaps = 54/253 (21%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML+++ + A    R  VRSLST+  L+ D LFVHRD++ +NLD+KFEF+ +N KRA+AII
Sbjct: 1   MLTSVVRCA----RAGVRSLSTSSALSSDKLFVHRDSEKNNLDIKFEFSAENLKRAKAII 56

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           ++YP GH  AA++PLLDLAQRQ GWLPISAM+YVA++L +P++RVYEVATFYTM+ R+P+
Sbjct: 57  AVYPEGHSNAALLPLLDLAQRQAGWLPISAMNYVAEYLGMPRIRVYEVATFYTMYNREPV 116

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM--------------------- 159
           G        ++H+  CTTTPC LR ++ +   I+KK  +                     
Sbjct: 117 G--------KFHIQICTTTPCMLRGAEDVQAHIEKKLAIKNGETTKDGLFTLSVVECLGA 168

Query: 160 -----MLE-----RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                ML+      +DL  KD++ I+D+LKAGKKP  GP          +GR  +A E  
Sbjct: 169 CVNAPMLQINDDYYEDLTNKDVDHILDELKAGKKPKIGP---------YNGR--KAGEPA 217

Query: 210 HDMTSLTGEPHGP 222
             +T LT  P GP
Sbjct: 218 GGLTCLTEPPKGP 230


>gi|443896531|dbj|GAC73875.1| hypothetical protein PANT_9d00311 [Pseudozyma antarctica T-34]
          Length = 266

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/255 (42%), Positives = 138/255 (54%), Gaps = 54/255 (21%)

Query: 3   SNLAKLASNVVRQN-VRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIIS 61
           SN   +AS   R + VR+LST+     D+LFVHR+T  +N D+ FEF  +N K A+ IIS
Sbjct: 22  SNTVAVASGSSRASAVRALSTSASRASDSLFVHRNTDYNNPDIPFEFNEENLKMAQEIIS 81

Query: 62  IYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
            YP  +++AAVIPLLDL QRQ+ GW  IS M+YVA  L +P MRVYEVATFYTMF R+P+
Sbjct: 82  YYPPQYKKAAVIPLLDLGQRQNSGWTSISVMNYVAKLLEMPPMRVYEVATFYTMFNREPV 141

Query: 121 GEERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNM------------MLER--- 163
           G        +Y +  CTTTPC L    S  IL  I+ K  +            ++E    
Sbjct: 142 G--------KYFMQLCTTTPCMLGGCGSTKILHAIQDKLQIKPGQTTADNKFTLVEVECL 193

Query: 164 ----------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQARE 207
                           +DL P+ M  IID L AG+K  PGP         QSGR   + E
Sbjct: 194 GACANAPMVQINDDYFEDLTPESMVNIIDKLSAGEKVKPGP---------QSGR--HSSE 242

Query: 208 AYHDMTSLTGEPHGP 222
                T+LT EP+GP
Sbjct: 243 PAQGRTALTSEPYGP 257


>gi|157110248|ref|XP_001651020.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Aedes aegypti]
 gi|108878789|gb|EAT43014.1| AAEL005508-PB [Aedes aegypti]
          Length = 207

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/202 (47%), Positives = 113/202 (55%), Gaps = 50/202 (24%)

Query: 52  NKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATF 111
           + +R  AI++IYP GH+R A+IPLLDLAQRQHGWLPISAMH VAD L LP MRVYEVATF
Sbjct: 17  HSQRVNAILNIYPEGHKRGAMIPLLDLAQRQHGWLPISAMHRVADILGLPNMRVYEVATF 76

Query: 112 YTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER-------- 163
           YTMF+RKP G         YH+  CTTTPCWLR SD I+   K+K  +            
Sbjct: 77  YTMFMRKPTG--------TYHVQVCTTTPCWLRGSDEIMTACKEKLGIGAGETTKDGKFT 128

Query: 164 -----------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSG 200
                                  +DL  KD  +I+ DLK GK P PGP         ++G
Sbjct: 129 ISEVECLGACVNAPMIAVNDDYYEDLTAKDTIEILSDLKQGKVPRPGP---------RNG 179

Query: 201 RFCQAREAYHDMTSLTGEPHGP 222
           RF  A E    +TSLT EP GP
Sbjct: 180 RF--ASEPTGGLTSLTEEPKGP 199


>gi|148706373|gb|EDL38320.1| mCG9061, isoform CRA_a [Mus musculus]
          Length = 155

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/130 (60%), Positives = 101/130 (77%), Gaps = 8/130 (6%)

Query: 30  ALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPIS 89
           ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV+P+LDLAQRQ+GWLPIS
Sbjct: 21  ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPIS 80

Query: 90  AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           AM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH+  CTTTPC LR+SD+I
Sbjct: 81  AMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYHIQVCTTTPCMLRDSDSI 132

Query: 150 LEVIKKKCNM 159
           LE +++K  +
Sbjct: 133 LETLQRKLGI 142


>gi|148706376|gb|EDL38323.1| mCG9061, isoform CRA_d [Mus musculus]
          Length = 238

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 94/199 (47%), Positives = 119/199 (59%), Gaps = 50/199 (25%)

Query: 55  RAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTM 114
           R EAI+  YP GH+ AAV+P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM
Sbjct: 51  RIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTM 110

Query: 115 FIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------- 163
           + RKP+G        +YH+  CTTTPC LR+SD+ILE +++K  + +             
Sbjct: 111 YNRKPVG--------KYHIQVCTTTPCMLRDSDSILETLQRKLGIKVGETTPDKLFTLIE 162

Query: 164 --------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFC 203
                               +DL PKD+E+IID+LKAGK P PGP         +SGRFC
Sbjct: 163 VECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGKVPKPGP---------RSGRFC 213

Query: 204 QAREAYHDMTSLTGEPHGP 222
              E    +TSLT  P GP
Sbjct: 214 C--EPAGGLTSLTEPPKGP 230


>gi|148706374|gb|EDL38321.1| mCG9061, isoform CRA_b [Mus musculus]
          Length = 211

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/130 (60%), Positives = 101/130 (77%), Gaps = 8/130 (6%)

Query: 30  ALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPIS 89
           ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV+P+LDLAQRQ+GWLPIS
Sbjct: 47  ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPIS 106

Query: 90  AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           AM+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH+  CTTTPC LR+SD+I
Sbjct: 107 AMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYHIQVCTTTPCMLRDSDSI 158

Query: 150 LEVIKKKCNM 159
           LE +++K  +
Sbjct: 159 LETLQRKLGI 168


>gi|325302644|tpg|DAA34098.1| TPA_exp: NADH-ubiquinone dehydrogenase [Amblyomma variegatum]
          Length = 137

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 79/121 (65%), Positives = 95/121 (78%), Gaps = 8/121 (6%)

Query: 18  RSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLD 77
           R LS +  L  + LFVHRD++ +N  VKFEFTP+N KRAEAI SIYP GH  AAVIPLLD
Sbjct: 25  RCLSVSSALRSEQLFVHRDSELNNAKVKFEFTPENLKRAEAITSIYPEGHRSAAVIPLLD 84

Query: 78  LAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCT 137
           LAQRQHGWLP++AMHYVAD+L +P+MRVYEVATFYTMF+R+P+G        +YH+  CT
Sbjct: 85  LAQRQHGWLPLTAMHYVADYLGMPRMRVYEVATFYTMFMRQPVG--------RYHVQVCT 136

Query: 138 T 138
           T
Sbjct: 137 T 137


>gi|312077733|ref|XP_003141433.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Loa loa]
 gi|307763404|gb|EFO22638.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Loa loa]
          Length = 236

 Score =  169 bits (428), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 89/206 (43%), Positives = 123/206 (59%), Gaps = 40/206 (19%)

Query: 20  LSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLA 79
           +S  +R + D+L VHRD++ +N    F+FTP+N KR E ++S YP  ++  A+IP+LDLA
Sbjct: 14  VSLPKRWSSDSLVVHRDSEINNCKTPFKFTPENMKRIEVMVSKYPPEYKCGALIPMLDLA 73

Query: 80  QRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTT 139
           QRQHGWLPISAMH VA  L + +MRVYEVATFY+MF RKP+G+  ++         C TT
Sbjct: 74  QRQHGWLPISAMHEVARILGIARMRVYEVATFYSMFNRKPMGKNFVQV--------CGTT 125

Query: 140 PCWLRNSDAILEVIKKKCNMMLER-------------------------------QDLEP 168
           PC LR +++I+E I KK  + +                                 +DL P
Sbjct: 126 PCMLRGAESIMEAITKKLGIKVGETTSDGLFTLAEVECLGACVNAPMVQINDDYYEDLTP 185

Query: 169 KDMEQIIDDLKAGKKPAPGP-SGYTS 193
           KD+  I+D+ KAGK+P PGP SG T+
Sbjct: 186 KDISDILDEFKAGKRPKPGPRSGRTA 211


>gi|390598670|gb|EIN08068.1| hypothetical protein PUNSTDRAFT_104301 [Punctularia strigosozonata
           HHB-11173 SS5]
          Length = 247

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/258 (41%), Positives = 139/258 (53%), Gaps = 56/258 (21%)

Query: 2   LSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIIS 61
           L N+ +LA+   R+  R +ST+     DALFVHRDT  +N  + FEFTP+N KRAE IIS
Sbjct: 4   LRNVQRLATRPCRR--RFISTSLSRRSDALFVHRDTPYNNPKIPFEFTPENMKRAEEIIS 61

Query: 62  IYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
            YP  +++AAVIPLLDL QRQ+ GW  IS M+YVA  L L  MRVYEVATFYTMF R+PI
Sbjct: 62  HYPPQYKKAAVIPLLDLGQRQNKGWTSISVMNYVAKLLELAPMRVYEVATFYTMFNREPI 121

Query: 121 GEERIKSILQYHLNWCTTTPCWL-----------------------RNSDAILEVIKKKC 157
           GE        + +  CTTTPC L                          D    VI+ +C
Sbjct: 122 GE--------HFVQVCTTTPCMLGGCGSELILDTVCQHLGGIKPGETTKDGKFTVIEVEC 173

Query: 158 N-------MMLE----RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAR 206
                   MM+      +DL P+   +++D    G+KP PGP         QSGR  +  
Sbjct: 174 QGACSNAPMMVVGDDFYEDLTPETTRKVLDAFAKGEKPKPGP---------QSGR--KTS 222

Query: 207 EAYHDMTSLTGEPHGPWD 224
           E    +T+LT +P+GP +
Sbjct: 223 ENSAGLTALTSKPYGPGE 240


>gi|71004230|ref|XP_756781.1| hypothetical protein UM00634.1 [Ustilago maydis 521]
 gi|46095830|gb|EAK81063.1| hypothetical protein UM00634.1 [Ustilago maydis 521]
          Length = 269

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/246 (41%), Positives = 132/246 (53%), Gaps = 57/246 (23%)

Query: 20  LSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLA 79
           LST+   + D+LFVHR+T  +N D+ FEF  +N K A+ IIS YP  +++AAVIPLLDL 
Sbjct: 43  LSTSAARSSDSLFVHRNTDYNNPDIPFEFNEENAKMAQEIISHYPEQYKKAAVIPLLDLG 102

Query: 80  QRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTT 138
           QRQ+ GW+ IS M+YVA  L +P MRVYEVATFYTMF R+P+G        +Y L  CTT
Sbjct: 103 QRQNSGWVSISVMNYVAKLLEMPPMRVYEVATFYTMFNREPVG--------KYFLQLCTT 154

Query: 139 TPCWLR--NSDAILEVIKKKCNMMLER-------------------------------QD 165
           TPC L    S  ILE ++ K  +   +                               +D
Sbjct: 155 TPCMLGGCGSTKILEALESKLGIKAGQTTKDNKFTLVEVECLGACANAPMIQINDDFFED 214

Query: 166 LEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPWDS 225
           L P+ M  IID L  G+K  PGP         QSGR   + E  +  T+LT EP+GP   
Sbjct: 215 LTPESMNNIIDKLSNGEKVKPGP---------QSGR--HSSEPANGRTALTSEPYGPG-- 261

Query: 226 KRDFCI 231
              FC+
Sbjct: 262 --KFCV 265


>gi|402591500|gb|EJW85429.1| NADH dehydrogenase flavoprotein 2 [Wuchereria bancrofti]
          Length = 232

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/214 (42%), Positives = 127/214 (59%), Gaps = 40/214 (18%)

Query: 12  VVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAA 71
           + R+ +  +S  +R + D + VHRD++ +N    F+FTP+N KR E +IS YP  ++  A
Sbjct: 2   ISRRYLMRISLPKRWSSDGMVVHRDSEINNSKTPFKFTPENMKRIEVMISKYPPEYKCGA 61

Query: 72  VIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQY 131
           +IP+LDLAQRQHGWLPISAMH VA  L + +MRVYEVATFY+MF RKP+G    K+ +Q 
Sbjct: 62  LIPMLDLAQRQHGWLPISAMHEVARILGIARMRVYEVATFYSMFNRKPMG----KNFVQV 117

Query: 132 HLNWCTTTPCWLRNSDAILEVIKKKCNMMLER---------------------------- 163
               C TTPC LR +++I+E I KK  + +                              
Sbjct: 118 ----CGTTPCMLRGAESIMEAITKKLGIKVGETTKDGLFSLAEVECLGACVNAPMVQIND 173

Query: 164 ---QDLEPKDMEQIIDDLKAGKKPAPGP-SGYTS 193
              +DL P+D+  I+D+ KAGK+P PGP SG T+
Sbjct: 174 DYYEDLTPEDISDILDEFKAGKRPKPGPRSGRTA 207


>gi|149037364|gb|EDL91795.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, isoform CRA_b
           [Rattus norvegicus]
          Length = 227

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 93/199 (46%), Positives = 118/199 (59%), Gaps = 50/199 (25%)

Query: 55  RAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTM 114
           R EAI+  YP GH  AAV+P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM
Sbjct: 40  RIEAIVRNYPEGHRAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTM 99

Query: 115 FIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------- 163
           + RKP+G        +YH+  CTTTPC LR+SD+ILE +++K  + +             
Sbjct: 100 YNRKPVG--------KYHIQVCTTTPCMLRDSDSILETLQRKLGIKVGETTPDKLFTLIE 151

Query: 164 --------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFC 203
                               +DL PKD+E+IID+L+AGK P PGP         +SGRFC
Sbjct: 152 VECLGACVNAPMVQINDDYYEDLTPKDIEEIIDELRAGKVPKPGP---------RSGRFC 202

Query: 204 QAREAYHDMTSLTGEPHGP 222
              E    +TSLT  P GP
Sbjct: 203 C--EPAGGLTSLTEPPKGP 219


>gi|390369007|ref|XP_797683.3| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Strongylocentrotus purpuratus]
          Length = 190

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/206 (46%), Positives = 116/206 (56%), Gaps = 50/206 (24%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
           KR   II+ YP GH+ AA +P+LDLAQRQHGW PISAM+ VAD L +PKMRVYEVATFYT
Sbjct: 2   KRVNDIIANYPEGHQAAACLPILDLAQRQHGWTPISAMNKVADILKMPKMRVYEVATFYT 61

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER---------- 163
           MF R P+G        +YH+  CTTTPC LR+SD+ILEV+ +K  + +            
Sbjct: 62  MFNRNPVG--------KYHIQICTTTPCMLRDSDSILEVLTRKLGIKVGETTKDNMFTLA 113

Query: 164 ---------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRF 202
                                +DL  KDME+IIDDLKAG+ P PGP         ++ RF
Sbjct: 114 EVECLGACVNAPMVQINDNYYEDLAVKDMEEIIDDLKAGRTPKPGP---------RNARF 164

Query: 203 CQAREAYHDMTSLTGEPHGPWDSKRD 228
             A E    +TSL   P GP    RD
Sbjct: 165 --ASEPEGGLTSLIDPPTGPGFGVRD 188


>gi|388855235|emb|CCF51129.1| probable NADH-ubiquinone oxidoreductase 24 kDa subunit,
           mitochondrial precursor [Ustilago hordei]
          Length = 265

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/246 (42%), Positives = 134/246 (54%), Gaps = 57/246 (23%)

Query: 20  LSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLA 79
           LST+   + D+LFVHR+T  +N D+ FEF  +NKK A+ IIS YP  +++AAVIPLLDL 
Sbjct: 39  LSTSAARSSDSLFVHRNTDYNNPDIPFEFNEENKKMAQEIISHYPEQYKKAAVIPLLDLG 98

Query: 80  QRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTT 138
           QRQ+ GW+ IS M+YVA  L +P MRVYEVATFYTMF R+P+G        +Y L  CTT
Sbjct: 99  QRQNSGWVSISVMNYVAKLLEMPPMRVYEVATFYTMFNREPVG--------KYFLQLCTT 150

Query: 139 TPCWLR--NSDAILEVIKKKCNM--------------------------MLE-----RQD 165
           TPC L    S  ILE ++ K  +                          M++      +D
Sbjct: 151 TPCMLGGCGSTKILEALESKLGIKAGQTTADKKFTLVEVECLGACANAPMIQINDDYYED 210

Query: 166 LEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPWDS 225
           L P+ M  IID L  G+   PGP         QSGR   + EA    T+LT EP+GP   
Sbjct: 211 LTPETMVNIIDKLSKGETVKPGP---------QSGR--HSSEAATGRTALTSEPYGPG-- 257

Query: 226 KRDFCI 231
              FC+
Sbjct: 258 --KFCV 261


>gi|389749212|gb|EIM90389.1| hypothetical protein STEHIDRAFT_166582 [Stereum hirsutum FP-91666
           SS1]
          Length = 248

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 108/266 (40%), Positives = 142/266 (53%), Gaps = 60/266 (22%)

Query: 2   LSNLAKLASNVV----RQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAE 57
           +S  A+L   V      ++ R  +T+     DALFVHRDT  +N  + FEF  +N KRA+
Sbjct: 1   MSLFARLPKRVCLPRPTRSARQFATSSSRRSDALFVHRDTTYNNPKIPFEFNAENMKRAQ 60

Query: 58  AIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFI 116
            IIS YP  +++AAVIPLLDL QRQ+ GW  IS M+YVA  L +P MRVYEVATFYTMF 
Sbjct: 61  DIISHYPPQYKKAAVIPLLDLGQRQNKGWTSISVMNYVAKLLEMPPMRVYEVATFYTMFN 120

Query: 117 RKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE---------------------VIKK 155
           R+PIG+  ++         CTTTPC LR S+ IL+                     VI+ 
Sbjct: 121 REPIGDNFVQ--------VCTTTPCMLRGSNEILDTVCKHLGGIKPGETTKDGKFTVIEV 172

Query: 156 KCN-------MMLE----RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQ 204
           +C        MM+      +DL  +  ++I+D    G KP PGP         QSGR  Q
Sbjct: 173 ECQGACSNAPMMVVGDDFYEDLTDESTKKILDAFSKGTKPKPGP---------QSGR--Q 221

Query: 205 AREAYHDMTSLTGEPHGPWDSKRDFC 230
             E    +TSLT +P+GP     +FC
Sbjct: 222 TSENSAGLTSLTSKPYGPG----EFC 243


>gi|170088518|ref|XP_001875482.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650682|gb|EDR14923.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 245

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 139/263 (52%), Gaps = 56/263 (21%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML  +++   +   Q+ R +STT     DALFVHRDT  +N  + FEF  +N KRA+ II
Sbjct: 1   MLPKISRSLLHRALQSRRLVSTTPSWRSDALFVHRDTPYNNPKIAFEFDTENMKRAQEII 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           S YP  +++AAVIPLLDL QRQ+ GW  IS M+YVA+ L +P MRVYEVATFYTMF R+P
Sbjct: 61  SFYPPQYKKAAVIPLLDLGQRQNKGWTSISVMNYVANLLGMPPMRVYEVATFYTMFNREP 120

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILE---------------------VIKKKCN 158
           IGE  ++         CTTTPC LR S  IL                      V++ +C 
Sbjct: 121 IGENFVQV--------CTTTPCMLRGSPEILNTVCDHLGGIKPGQTTSDGKFTVVEVECQ 172

Query: 159 MMLER-----------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQARE 207
                           +DL P+  ++I+     G+KP  GP         QSGR  +  E
Sbjct: 173 GACSNAPMLVVGDDFYEDLTPETTKKILSAFAKGQKPKAGP---------QSGR--RTSE 221

Query: 208 AYHDMTSLTGEPHGPWDSKRDFC 230
               +TSLT +P+GP     +FC
Sbjct: 222 NSAGLTSLTTKPYGPG----EFC 240


>gi|170581126|ref|XP_001895548.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Brugia malayi]
 gi|158597468|gb|EDP35614.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor, putative [Brugia malayi]
          Length = 234

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 90/206 (43%), Positives = 124/206 (60%), Gaps = 40/206 (19%)

Query: 20  LSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLA 79
           +S  +R + D + VHRD++ +N +  F+FTP+N KR E +IS YP  ++  A+IP+LDLA
Sbjct: 12  VSLPKRWSSDGMVVHRDSEINNSNTPFKFTPENMKRIEVMISKYPPEYKCGALIPMLDLA 71

Query: 80  QRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTT 139
           QRQHGWLPISAMH VA  L + +MRVYEVATFY+MF RKP+G    K+ +Q     C TT
Sbjct: 72  QRQHGWLPISAMHEVARILGIARMRVYEVATFYSMFNRKPMG----KNFVQV----CGTT 123

Query: 140 PCWLRNSDAILEVIKKKCNMMLER-------------------------------QDLEP 168
           PC LR +++I+E I KK  + +                                 +DL P
Sbjct: 124 PCMLRGAESIMEAITKKLGIKVGETTKDGLFSLAEVECLGACVNAPMVQINDDYYEDLTP 183

Query: 169 KDMEQIIDDLKAGKKPAPGP-SGYTS 193
           +D+  I+D+ KAGK+P PGP SG T+
Sbjct: 184 EDISDILDEFKAGKRPKPGPRSGRTA 209


>gi|409046373|gb|EKM55853.1| hypothetical protein PHACADRAFT_184607 [Phanerochaete carnosa
           HHB-10118-sp]
          Length = 244

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 107/259 (41%), Positives = 139/259 (53%), Gaps = 57/259 (22%)

Query: 6   AKLASNV-VRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYP 64
           A+LA  +   +  R + TT     DALFVHRDT  +N  + F+FTP N KRAE IIS YP
Sbjct: 4   ARLARTLKAARGARRICTTPARKSDALFVHRDTPYNNPKIPFQFTPGNLKRAEEIISRYP 63

Query: 65  VGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEE 123
             +++AAVIPLLDL QRQ+ GW  IS M+YVA  L +P MRVYEVATFYTMF R+PIGE 
Sbjct: 64  PQYKKAAVIPLLDLGQRQNKGWTSISVMNYVAKLLEMPPMRVYEVATFYTMFNREPIGEN 123

Query: 124 RIKSILQYHLNWCTTTPCWLRNSDAILE---------------------VIKKKCN---- 158
            ++         CTTTPC LR +  IL+                     VI+ +C     
Sbjct: 124 FVQ--------VCTTTPCMLRGAYNILDTVCKDLGGIKPGETTKDGKFTVIEVECQGACS 175

Query: 159 ---MMLER----QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHD 211
              MM+      +DL  +  ++++D  K G KP PGP         QSGR     E    
Sbjct: 176 NAPMMVVGDDFYEDLTSETTKKVLDAFKKGDKPKPGP---------QSGR--HTSENSAG 224

Query: 212 MTSLTGEPHGPWDSKRDFC 230
           +T+L  +P+GP     +FC
Sbjct: 225 LTALASKPYGPG----EFC 239


>gi|358059791|dbj|GAA94437.1| hypothetical protein E5Q_01089 [Mixia osmundae IAM 14324]
          Length = 244

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 141/263 (53%), Gaps = 55/263 (20%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML   A+L    V    RS+++T     DALFVHRD+  +N  + F FTP+ KK A+ II
Sbjct: 1   MLRCAARLPLRTVALQRRSIASTAPRASDALFVHRDSDYNNSKIPFAFTPEYKKMADEII 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           S +P  +++AAVIPLL+L QRQ+ GW  IS M+YVA+ L++P MRVYEVATFYTMF R+P
Sbjct: 61  SRFPAQYKKAAVIPLLELGQRQNKGWTSISVMNYVANLLDMPPMRVYEVATFYTMFNREP 120

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM-------------------- 159
           +G+  I+         CTTTPC LR+S  IL  IK    +                    
Sbjct: 121 VGDNFIQ--------ICTTTPCALRDSTGILNTIKSHLGIECGETTKDKKFTLVEVECLG 172

Query: 160 ------MLE-----RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREA 208
                 M++      +DL P+   +I+  L+AGK+P PGP         QS R  +  E 
Sbjct: 173 ACSNAPMIQINDDYYEDLTPETTVKILKSLEAGKRPKPGP---------QSER--RTSEP 221

Query: 209 YHDMTSLTGEPHGPWDSKRDFCI 231
               TSLT +P GP      FC+
Sbjct: 222 AGGRTSLTEKPPGPG----QFCV 240


>gi|328860556|gb|EGG09661.1| hypothetical protein MELLADRAFT_71096 [Melampsora larici-populina
           98AG31]
          Length = 257

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 104/267 (38%), Positives = 148/267 (55%), Gaps = 63/267 (23%)

Query: 2   LSNLA--------KLASNVVRQN--VRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPD 51
           LSNLA        K   N +R N  ++S +T  + + D+LFVHR+T  +N D+ FEFTP+
Sbjct: 3   LSNLALRNLKTFIKPTINPIRSNTSIKSFTTFTKHSSDSLFVHRNTSYNNPDLPFEFTPE 62

Query: 52  NKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVAT 110
             K+A+  I  +P  +++AAVIP+LDLAQRQ+ GW  IS M+YVA  L++  MRVYEVAT
Sbjct: 63  YMKQAQRCIDNFPPQYKKAAVIPVLDLAQRQNKGWTSISVMNYVAKLLDMTPMRVYEVAT 122

Query: 111 FYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNMMLER----- 163
           FYTMF R+P+GE        + +  CTTTPC L    S  I++ IK    + L +     
Sbjct: 123 FYTMFNREPVGE--------HFVQVCTTTPCMLGGCGSSIIVDTIKDHLGIQLGQTTADK 174

Query: 164 --------------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGS 197
                                     +DL P  M++I+D+LKAG+KP+PGP         
Sbjct: 175 KFTVIEVECLGACSNAPMVQINDDFYEDLTPDSMKKILDELKAGRKPSPGP--------- 225

Query: 198 QSGRFCQAREAYHDMTSLTGEPHGPWD 224
           QS R  ++ E    +TSL+ +P+GP +
Sbjct: 226 QSSR--KSSEPVGGLTSLSEKPYGPGE 250


>gi|403417214|emb|CCM03914.1| predicted protein [Fibroporia radiculosa]
          Length = 245

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/246 (42%), Positives = 133/246 (54%), Gaps = 56/246 (22%)

Query: 18  RSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLD 77
           R +S+T     DALFVHRDT  +N  V FEF  +N KRA+ IIS YP  +++AA IPLLD
Sbjct: 18  RKISSTTSKRSDALFVHRDTPYNNPKVPFEFNAENLKRAQEIISHYPPQYKKAATIPLLD 77

Query: 78  LAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWC 136
           L QRQ+ GW  IS M+YVA  L +P MRVYEVATFYTMF R+PIGE  ++         C
Sbjct: 78  LGQRQNKGWTSISVMNYVAKLLEMPPMRVYEVATFYTMFNREPIGENFVQ--------VC 129

Query: 137 TTTPCWLRNSDAILE---------------------VIKKKCN-------MMLER----Q 164
           TTTPC LR S  IL+                     VI+ +C        MM+      +
Sbjct: 130 TTTPCMLRGSYDILDTVCAHLGGVKPGETTKNGKFTVIEVECQGACSNAPMMVVNDDFYE 189

Query: 165 DLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPWD 224
           DL P   ++++D    G+KP PGP         QSGR      A   +T+LT +P+GP  
Sbjct: 190 DLTPATTKKVLDAFAKGEKPKPGP---------QSGRHTSENSA--GLTALTSKPYGPG- 237

Query: 225 SKRDFC 230
              +FC
Sbjct: 238 ---EFC 240


>gi|393245381|gb|EJD52891.1| hypothetical protein AURDEDRAFT_180503 [Auricularia delicata
           TFB-10046 SS5]
          Length = 247

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/235 (42%), Positives = 127/235 (54%), Gaps = 56/235 (23%)

Query: 29  DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLP 87
           DALFVHRDT  +N  + FEF   N KRA+ II+ YP  +++AAVIPLLDL QRQ+ GW  
Sbjct: 31  DALFVHRDTPYNNPQIPFEFDAANLKRAQEIIAHYPPQYKKAAVIPLLDLGQRQNKGWTS 90

Query: 88  ISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSD 147
           IS M+YVA  L+LP MRVYEVATFYTMF R+PIG         + +  CTTTPC LRNS 
Sbjct: 91  ISVMNYVARLLDLPPMRVYEVATFYTMFNREPIGA--------HFVQVCTTTPCMLRNST 142

Query: 148 AILE---------------------VIKKKCNMMLER-----------QDLEPKDMEQII 175
            IL                      V++ +C                 +DL P+  ++I+
Sbjct: 143 GILNTVCSHLGGIKPGDTTKDGKFTVVEVECQGACSNAPMIVVGDDFYEDLTPESTKKIL 202

Query: 176 DDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPWDSKRDFC 230
           D   AG+KP PGP         QSGR  Q  E    +T+LT +P GP     +FC
Sbjct: 203 DAFAAGQKPKPGP---------QSGR--QTSENSAGLTALTSKPPGPG----EFC 242


>gi|326431971|gb|EGD77541.1| NADH dehydrogenase flavoprotein 2 [Salpingoeca sp. ATCC 50818]
          Length = 251

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/256 (40%), Positives = 141/256 (55%), Gaps = 53/256 (20%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDA--LFVHRDTKDDNLDVKFEFTPDNKKRAEA 58
           ++S LA  +   V    RS++T+ R +  A  LFVHRD++++N +  F+FT  N KR EA
Sbjct: 5   IVSRLASSSQMGVLAARRSVATSSRSSMAAGKLFVHRDSEENNDETPFKFTDSNMKRVEA 64

Query: 59  IISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIR 117
           II  +P  H  AA IP+LDLAQRQ+ GWLP++AM+ VA  L +PKMRVYEVATFYTMF R
Sbjct: 65  IIGQFPPNHRSAACIPVLDLAQRQNNGWLPLNAMNEVAKILRMPKMRVYEVATFYTMFNR 124

Query: 118 KPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM------------MLE--- 162
           +P+G        +YH+  CTTTPC +R +  + + +K K  +            +LE   
Sbjct: 125 EPVG--------KYHIQVCTTTPCMVRGAYKVFDHLKAKLGLENGETSDDKLFTLLEVEC 176

Query: 163 ----------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAR 206
                            +DL  +D+++I+D LKAGK P PGP         QSGR   A 
Sbjct: 177 LGACANAPMIQINDEYYEDLTIEDVDRIVDMLKAGKTPKPGP---------QSGR--NAA 225

Query: 207 EAYHDMTSLTGEPHGP 222
           E     T+L   P  P
Sbjct: 226 EPLSGQTTLLETPPPP 241


>gi|392595915|gb|EIW85238.1| hypothetical protein CONPUDRAFT_98117 [Coniophora puteana
           RWD-64-598 SS2]
          Length = 243

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/246 (41%), Positives = 133/246 (54%), Gaps = 56/246 (22%)

Query: 18  RSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLD 77
           R LS++     DALFVHRDTK +N  + FEF+ +N  +AE II+ YP  + +AAVIPLLD
Sbjct: 16  RGLSSSSVKRSDALFVHRDTKYNNPSIPFEFSKENLTKAEEIIAHYPPQYRKAAVIPLLD 75

Query: 78  LAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWC 136
           L QRQ+ GW  IS M+YVA  L +P MRVYEVATFYTMF R+PIG+  ++         C
Sbjct: 76  LGQRQNKGWTSISVMNYVAKLLGMPPMRVYEVATFYTMFNREPIGDNFVQ--------VC 127

Query: 137 TTTPCWLRNSDAILE---------------------VIKKKCN-------MMLER----Q 164
           TTTPC LR S  IL+                     VI+ +C        MM+      +
Sbjct: 128 TTTPCMLRGSTEILDTVCSHLGDIKPGETTKDGKFTVIEVECQGACSNAPMMVVNDDFYE 187

Query: 165 DLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPWD 224
           DL     ++++D    G+KP PGP         QSGR      A   +T+LT +P+GP  
Sbjct: 188 DLTAASTKKVLDAFAQGQKPKPGP---------QSGRHTSENSA--GLTALTSKPYGPG- 235

Query: 225 SKRDFC 230
              +FC
Sbjct: 236 ---EFC 238


>gi|302694579|ref|XP_003036968.1| hypothetical protein SCHCODRAFT_45793 [Schizophyllum commune H4-8]
 gi|300110665|gb|EFJ02066.1| hypothetical protein SCHCODRAFT_45793 [Schizophyllum commune H4-8]
          Length = 257

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/245 (41%), Positives = 130/245 (53%), Gaps = 55/245 (22%)

Query: 18  RSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLD 77
           R+LS +     DALFVHRDT  +N  + FEF  +N KRAE II+ YP  +++AAVIPLLD
Sbjct: 31  RALSASACRRSDALFVHRDTPYNNPKIPFEFNAENLKRAEEIIARYPPQYKKAAVIPLLD 90

Query: 78  LAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWC 136
           L QRQ+ GW  IS M+YVA  L +P MRVYEVATFYTMF R+PIGE        + +  C
Sbjct: 91  LGQRQNKGWTSISVMNYVARLLGMPPMRVYEVATFYTMFNREPIGE--------HFVQVC 142

Query: 137 TTTPCWLRNSDAILEVIKKKCN---------------------------MMLER----QD 165
           TTTPC LR S  IL  +  + N                           MM+      +D
Sbjct: 143 TTTPCMLRGSTDILNTVCNELNVKPGGTSKDGKFTVVEVECQGACSNAPMMVVGDDFYED 202

Query: 166 LEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPWDS 225
           L P+  ++I+     G+KP  GP         QS R  Q  E    +T+LT +P+GP   
Sbjct: 203 LTPESTKRILAAFSKGEKPKAGP---------QSNR--QTSENSAGLTALTSKPYGPG-- 249

Query: 226 KRDFC 230
             +FC
Sbjct: 250 --EFC 252


>gi|449543546|gb|EMD34522.1| hypothetical protein CERSUDRAFT_55069 [Ceriporiopsis subvermispora
           B]
          Length = 247

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/251 (40%), Positives = 131/251 (52%), Gaps = 56/251 (22%)

Query: 13  VRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
            R   R++S T     DALFVHRDT  +N  + FEF  +N KRA+ IIS YP  +++AAV
Sbjct: 15  ARVPARNISVTACRKSDALFVHRDTTYNNPKIPFEFNEENTKRAKEIISHYPPQYKKAAV 74

Query: 73  IPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQY 131
           IPLLDL QRQ+ GW  IS M+YVA  L +P MRVYEVATFYTMF R PIGE        +
Sbjct: 75  IPLLDLGQRQNKGWTSISVMNYVARLLEMPPMRVYEVATFYTMFNRSPIGE--------H 126

Query: 132 HLNWCTTTPCWLRNSDAILE---------------------VIKKKCNMMLER------- 163
            +  CTTTPC LR S  IL+                     VI+ +C             
Sbjct: 127 FVQVCTTTPCMLRGSYDILDTICSHLGGIKPGDTTKDGKFTVIEVECQGACSNAPMMAVG 186

Query: 164 ----QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEP 219
               +DL P+  +++I+    G+KP  GP         QSGR      A   +T+LT +P
Sbjct: 187 DDFYEDLTPETTKKVIEAFAKGEKPKAGP---------QSGRHTSENSA--GLTALTSKP 235

Query: 220 HGPWDSKRDFC 230
           +GP     +FC
Sbjct: 236 YGPG----EFC 242


>gi|395330166|gb|EJF62550.1| hypothetical protein DICSQDRAFT_146230 [Dichomitus squalens
           LYAD-421 SS1]
          Length = 248

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/241 (41%), Positives = 133/241 (55%), Gaps = 52/241 (21%)

Query: 17  VRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLL 76
            R++ ++     DALFVHRDT  +N  + FEF+P+N KRA+ IIS YP  +++AAVIPLL
Sbjct: 20  ARAICSSAPRRSDALFVHRDTPYNNPKIPFEFSPENLKRAQEIISHYPPQYKKAAVIPLL 79

Query: 77  DLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNW 135
           DL QRQ+ GW  IS M+YVA+ L +P MRVYEVATFYTMF R+PIGE        + +  
Sbjct: 80  DLGQRQNKGWTSISVMNYVANLLEMPPMRVYEVATFYTMFNREPIGE--------HFVQV 131

Query: 136 CTTTPCWLRNSDAILE---------------------VIKKKCN-------MMLE----R 163
           CTTTPC L  +  ILE                     VI+ +C        MM+      
Sbjct: 132 CTTTPCMLNGAYEILETVCSELGGIKPGETTKDGKFTVIEVECQGACSNAPMMVVGDDFY 191

Query: 164 QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPW 223
           +DL  +   +++   K G+KP PGP         QSGR      A   +T+LT +P+GP 
Sbjct: 192 EDLTSETTRKVLAAFKKGEKPKPGP---------QSGRHTSENSA--GLTALTEKPYGPG 240

Query: 224 D 224
           +
Sbjct: 241 E 241


>gi|328769609|gb|EGF79652.1| hypothetical protein BATDEDRAFT_33281 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 257

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/237 (38%), Positives = 126/237 (53%), Gaps = 52/237 (21%)

Query: 18  RSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLD 77
           RS  ++  +  D LFVHR+TK +N D+ FEFTP   KRA+ II+ YP  +++ A +PLLD
Sbjct: 33  RSFGSSCAVASDKLFVHRNTKVNNPDIPFEFTPAEMKRAQEIIAKYPAQYKKGATMPLLD 92

Query: 78  LAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCT 137
           LAQRQ GW+ IS+M+Y+A  L +P MRVYEVATFYTM+ R P+G        +Y L  CT
Sbjct: 93  LAQRQLGWVSISSMNYIAKLLEMPPMRVYEVATFYTMYNRDPVG--------KYFLQVCT 144

Query: 138 TTPCWLRNSDAILEVIKKKCNMMLER-------------------------------QDL 166
           TTPC L  SDAI++  ++   + L                                 +DL
Sbjct: 145 TTPCQLCGSDAIVKAAEETLGIKLGETTSDNMFTLVEVECAGACVNAPVMAVNDDYYEDL 204

Query: 167 EPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRF-CQAREAYHDMTSLTGEPHGP 222
                + +++ +K G  P PGP          SGR  C+ R     +TSLT +P GP
Sbjct: 205 TVDATKSLLESIKKGTVPKPGPV---------SGRMNCEPRAG---LTSLTTKPTGP 249


>gi|331251140|ref|XP_003338171.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
 gi|309317161|gb|EFP93752.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
          Length = 277

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/259 (38%), Positives = 141/259 (54%), Gaps = 57/259 (22%)

Query: 4   NLAKLASNVV----RQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAI 59
           +L+K ++N V      N R  S+T     D+LFVHRDT  +N  + FEFTP+  ++A+  
Sbjct: 31  SLSKSSTNNVILPSVSNRRPWSSTAIQRSDSLFVHRDTSYNNPQIPFEFTPEYMEKAQRC 90

Query: 60  ISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118
           I  +P  +++AAVIP+LDLAQRQ +GW  IS M+YVA  L +P MRVYEVATFYTMF R+
Sbjct: 91  IDNFPPQYKKAAVIPVLDLAQRQNNGWTSISVMNYVAKLLEMPPMRVYEVATFYTMFNRE 150

Query: 119 PIGEERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNMMLER------------- 163
           P+GE        + +  CTTTPC L    S  I+E IK    + L +             
Sbjct: 151 PVGE--------HFVQICTTTPCMLGGCGSGVIVEAIKNHLGVELGQTTKDKKFTVIEVE 202

Query: 164 ------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQA 205
                             +DL P+ + +++D+L AG+KP PGP         QS R  Q+
Sbjct: 203 CLGACSNAPMVQINDDFYEDLTPESVVKVLDELAAGRKPKPGP---------QSSR--QS 251

Query: 206 REAYHDMTSLTGEPHGPWD 224
            E    +TSL+ +P+GP +
Sbjct: 252 SEPVGKLTSLSEKPYGPGE 270


>gi|393215776|gb|EJD01267.1| hypothetical protein FOMMEDRAFT_110953 [Fomitiporia mediterranea
           MF3/22]
          Length = 249

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/246 (41%), Positives = 131/246 (53%), Gaps = 56/246 (22%)

Query: 18  RSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLD 77
           R LS++     DALFVHRDT  +N  + FEF  +N KRA+ IIS YP  +++AAVIPLLD
Sbjct: 22  RLLSSSVARRSDALFVHRDTSFNNPKIPFEFNAENLKRAKEIISHYPPQYKKAAVIPLLD 81

Query: 78  LAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWC 136
           L QRQ+ GW  IS M+YVA  L +P MRVYEVATFYTMF R PIG+  ++         C
Sbjct: 82  LGQRQNDGWTSISVMNYVAQLLEMPPMRVYEVATFYTMFNRSPIGKNFVQ--------VC 133

Query: 137 TTTPCWLRNSDAILE---------------------VIKKKCN-------MMLER----Q 164
           TTTPC LR S  IL                      VI+ +C        MM+      +
Sbjct: 134 TTTPCMLRGSTEILNTVCQHLGGIKPGETTKDGKFTVIEVECQGACSNAPMMVVNDEYYE 193

Query: 165 DLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPWD 224
           DL  +   +I+D    G+ P PGP         QSGR  +  E    +T+LT +P+GP  
Sbjct: 194 DLTAESTVKILDTFAKGQTPTPGP---------QSGR--KTSENSAGLTALTSKPYGPG- 241

Query: 225 SKRDFC 230
              +FC
Sbjct: 242 ---EFC 244


>gi|353227264|emb|CCA77777.1| probable NADH-ubiquinone oxidoreductase 24 kDa subunit,
           mitochondrial precursor [Piriformospora indica DSM
           11827]
          Length = 230

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/241 (40%), Positives = 131/241 (54%), Gaps = 52/241 (21%)

Query: 17  VRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLL 76
            R++S++     DALFVHRDT  +N  + F FTP+N K+AE IIS YP  +++AA+IPLL
Sbjct: 2   ARTISSSSSRASDALFVHRDTPYNNSSIPFSFTPENMKKAEEIISHYPPQYKKAAIIPLL 61

Query: 77  DLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNW 135
           DL QRQ+ GW  IS M+YVA  + +P MRVYEVATFYTMF R+PIG        Q  +  
Sbjct: 62  DLGQRQNKGWTSISVMNYVAKLVEVPPMRVYEVATFYTMFNREPIG--------QNFVQV 113

Query: 136 CTTTPCWLRNSDAILEVIKK-------------------------KCN---MMLER---- 163
           CTTTPC LR +  ILE ++                           C+   MM       
Sbjct: 114 CTTTPCMLRGAYDILETVQSHLGGIHVGDTTKDGKFTLVEVECLGACSNAPMMAVNDDFY 173

Query: 164 QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPW 223
           +DL P+  ++++D    G  P PGP         QSGR  Q  E    +T+LT +P+GP 
Sbjct: 174 EDLTPETTKKVLDVFAKGSIPKPGP---------QSGR--QTSENSAGLTALTSKPYGPG 222

Query: 224 D 224
           +
Sbjct: 223 E 223


>gi|320168340|gb|EFW45239.1| NADH dehydrogenase flavoprotein 2 [Capsaspora owczarzaki ATCC
           30864]
          Length = 255

 Score =  159 bits (403), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 103/263 (39%), Positives = 141/263 (53%), Gaps = 57/263 (21%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTT--------QRLNHDALFVHRDTKDDNLDVKFEFTPDN 52
           ML++L   AS  VR  VR+ ST+        +RL  D LFVHRD      D  FEFT +N
Sbjct: 1   MLASLVSRAS--VRLAVRTPSTSASQQQQQPRRLMSDKLFVHRDAGVYK-DEPFEFTAEN 57

Query: 53  KKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFY 112
             RA +II+IYP  H+ AA IPLLDLAQRQHGWLP+SAM+ VA  L++  +RVYE A+FY
Sbjct: 58  LTRAASIIAIYPPKHQAAATIPLLDLAQRQHGWLPLSAMNTVAKMLDMAPIRVYETASFY 117

Query: 113 TMFIRKPIGEERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNM----------- 159
           TMF R+ IG        +YH+  CTTTPC L    SD I++ ++K   +           
Sbjct: 118 TMFNREKIG--------KYHVQVCTTTPCLLGGCGSDKIMKAVQKNLGVHPGGTTSDGLF 169

Query: 160 ---------------MLE-----RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQS 199
                          M++      +DL P+  EQI+D  + G +P PGP    +     +
Sbjct: 170 TFTEVECLGACVNAPMIQINDDFYEDLTPETTEQILDGFRRGDRPKPGPQKDPA-----T 224

Query: 200 GRFCQAREAYHDMTSLTGEPHGP 222
           G+  ++ E    +T+L  +P GP
Sbjct: 225 GKLRKSCEPVDGLTTLKEKPTGP 247


>gi|340923724|gb|EGS18627.1| hypothetical protein CTHT_0052320 [Chaetomium thermophilum var.
           thermophilum DSM 1495]
          Length = 318

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 100/271 (36%), Positives = 146/271 (53%), Gaps = 61/271 (22%)

Query: 1   MLSNLAKLASN----VVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRA 56
           ++  +A++ S     +V    R+LST+   + D L VHR+T ++N D+ F+FTP+N+K  
Sbjct: 67  LMRTVARMGSRAMWAMVPAPARTLSTSAMRHSDTLMVHRNTPENNPDIPFKFTPENEKII 126

Query: 57  EAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFI 116
           E I+  YP  +++AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVA+FYTM+ 
Sbjct: 127 EQILKRYPPQYKKAAVMPLLDLGQRQHGFCSISVMNEVARILEMPPMRVYEVASFYTMYN 186

Query: 117 RKPIGEERIKSILQYHLNWCTTTPCWLRN--SDAILEVIKKKCNM--------------- 159
           R P+G        ++H+  CTTTPC L    SDAI++ IK+   +               
Sbjct: 187 RTPVG--------KFHVQACTTTPCQLGGCGSDAIVKAIKEHLGINQGETTPDGLFTFIE 238

Query: 160 -----------MLE-----RQDLEPKDMEQIIDDLK-----AGKKPAPGPSGYTSGIGSQ 198
                      M++      +DL P+ ++Q++  LK       K P PGP         Q
Sbjct: 239 VECLGACVNAPMVQINDDYYEDLTPETIKQVLTALKESVNDVSKAPKPGP---------Q 289

Query: 199 SGRFCQAREAYHDMTSLTGEPHGPWDSKRDF 229
           SGR  Q+ E    +TSLT EP GP  ++ D 
Sbjct: 290 SGR--QSCENSAGLTSLTSEPWGPEKTRPDL 318


>gi|58265356|ref|XP_569834.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108801|ref|XP_776944.1| hypothetical protein CNBC0100 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259626|gb|EAL22297.1| hypothetical protein CNBC0100 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226066|gb|AAW42527.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 249

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/263 (39%), Positives = 142/263 (53%), Gaps = 59/263 (22%)

Query: 3   SNLAKLASNVVRQNVRS-LSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIIS 61
           S +  + + + R   RS +S+T RL+ DALFVHRDT  +N  + FEFTP+N KRA  II+
Sbjct: 6   STIQSVRNTLARPTRRSFVSSTSRLS-DALFVHRDTDYNNPSIPFEFTPENLKRAHEIIA 64

Query: 62  IYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
            YP  +++AA +P+LDL QRQ+ GW  IS M+ VA  L++PKMRVYEVATFYTM+ R+P+
Sbjct: 65  RYPPQYKKAAALPILDLGQRQNKGWTSISVMNAVAKLLDMPKMRVYEVATFYTMYNREPV 124

Query: 121 GEERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNM------------------- 159
               ++         CTTTPC L    S  ILE I+    +                   
Sbjct: 125 APNFVQ--------LCTTTPCQLGGCGSTKILETIESHLGVHPGQTTKDGKFTFVEVECL 176

Query: 160 -------MLE-----RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQARE 207
                  M++      +DL P+   +I+D L  G+KP PGP         QSGR  Q  E
Sbjct: 177 GACSNAPMMQIGDDYYEDLTPETTVKILDALARGEKPKPGP---------QSGR--QTSE 225

Query: 208 AYHDMTSLTGEPHGPWDSKRDFC 230
               +T+LT +P+GP     +FC
Sbjct: 226 NSAGLTTLTTKPYGPG----EFC 244


>gi|336472751|gb|EGO60911.1| NADH/ubiquinone oxidoreductase [Neurospora tetrasperma FGSC 2508]
 gi|350294006|gb|EGZ75091.1| NADH-ubiquinone oxidoreductase 24 KDA subunit precursor (Nuo-24)
           [Neurospora tetrasperma FGSC 2509]
          Length = 263

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/265 (37%), Positives = 138/265 (52%), Gaps = 57/265 (21%)

Query: 3   SNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISI 62
           + L+   S V   +   LS + R   D L VHR+T D+N D+ F+F+ DN+K  E II  
Sbjct: 18  TRLSSKPSTVAPVSRACLSISARRPSDTLMVHRNTPDNNPDIPFKFSADNEKVIEEIIKR 77

Query: 63  YPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGE 122
           YP  +++AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVA+FYTM+ R P+G 
Sbjct: 78  YPPQYKKAAVMPLLDLGQRQHGFCSISVMNEVARLLEMPPMRVYEVASFYTMYNRTPVG- 136

Query: 123 ERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNM--------------------- 159
                  ++H+  CTTTPC L    SD I++ IK+   +                     
Sbjct: 137 -------KFHVQACTTTPCQLGGCGSDVIVKAIKEHLGIKQGETTPDGLFTFIEVECLGA 189

Query: 160 -----MLE-----RQDLEPKDMEQIIDDLK-----AGKKPAPGPSGYTSGIGSQSGRFCQ 204
                M++      +DL P+ ++Q++  LK       K P PGP         QSGR  Q
Sbjct: 190 CANAPMVQINDDYFEDLTPETIKQVLSALKESVTDVSKAPQPGP---------QSGR--Q 238

Query: 205 AREAYHDMTSLTGEPHGPWDSKRDF 229
             E    +TSLT EP+GP  ++ D 
Sbjct: 239 TCENAAGLTSLTSEPYGPEVTRSDL 263


>gi|85103526|ref|XP_961535.1| NADH:ubiquinone oxidoreductase 24kD subunit [Neurospora crassa
           OR74A]
 gi|730212|sp|P40915.1|NDUV2_NEUCR RecName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit,
           mitochondrial; Flags: Precursor
 gi|577595|emb|CAA54990.1| NUO-24 [Neurospora crassa]
 gi|18376247|emb|CAD21361.1| NADH-UBIQUINONE OXIDOREDUCTASE 24 KDA SUBUNIT PRECURSOR (Nuo-24)
           [Neurospora crassa]
 gi|28923082|gb|EAA32299.1| NADH:ubiquinone oxidoreductase 24kD subunit [Neurospora crassa
           OR74A]
 gi|1092497|prf||2024210B NADH/ubiquinone oxidoreductase:SUBUNIT=24kD
          Length = 263

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 98/265 (36%), Positives = 138/265 (52%), Gaps = 57/265 (21%)

Query: 3   SNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISI 62
           + L+   S +   +   LS + R   D L VHR+T D+N D+ F+F+ DN+K  E II  
Sbjct: 18  TRLSTKPSTIAPVSRACLSISARRPSDTLMVHRNTPDNNPDIPFKFSADNEKVIEEIIKR 77

Query: 63  YPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGE 122
           YP  +++AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVA+FYTM+ R P+G 
Sbjct: 78  YPPQYKKAAVMPLLDLGQRQHGFCSISVMNEVARLLEMPPMRVYEVASFYTMYNRTPVG- 136

Query: 123 ERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNM--------------------- 159
                  ++H+  CTTTPC L    SD I++ IK+   +                     
Sbjct: 137 -------KFHVQACTTTPCQLGGCGSDVIVKAIKEHLGIKQGETTPDGLFTFIEVECLGA 189

Query: 160 -----MLE-----RQDLEPKDMEQIIDDLK-----AGKKPAPGPSGYTSGIGSQSGRFCQ 204
                M++      +DL P+ ++Q++  LK       K P PGP         QSGR  Q
Sbjct: 190 CANAPMVQINDDYFEDLTPETIKQVLSALKESVTDVSKAPQPGP---------QSGR--Q 238

Query: 205 AREAYHDMTSLTGEPHGPWDSKRDF 229
             E    +TSLT EP+GP  ++ D 
Sbjct: 239 TCENAAGLTSLTSEPYGPEVTRSDL 263


>gi|380093277|emb|CCC08935.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 264

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 97/248 (39%), Positives = 131/248 (52%), Gaps = 57/248 (22%)

Query: 20  LSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLA 79
           LS + R   D L VHR+T D+N D+ F+F+ +N+K  E II  YP  +++AAV+PLLDL 
Sbjct: 36  LSISARRPSDTLMVHRNTPDNNPDIPFKFSAENEKVIEEIIKRYPPQYKKAAVMPLLDLG 95

Query: 80  QRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTT 139
           QRQHG+  IS M+ VA  L +P MRVYEVA+FYTM+ R P+G        ++H+  CTTT
Sbjct: 96  QRQHGFCSISVMNEVARLLEMPPMRVYEVASFYTMYNRTPVG--------KFHVQACTTT 147

Query: 140 PCWLR--NSDAILEVIKKKCNM------------MLER-------------------QDL 166
           PC L    SD I++ IK+   +             LE                    +DL
Sbjct: 148 PCQLGGCGSDVIVKAIKEHLGIKQGETTPDGLFTFLEVECLGACANAPMVQINDDYFEDL 207

Query: 167 EPKDMEQIIDDLK-----AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
            P+ + Q++  LK     A K P PGP         QSGR  Q  E    +TSLT EP+G
Sbjct: 208 TPETITQVLVALKESVTDASKAPKPGP---------QSGR--QTCENAAGLTSLTSEPYG 256

Query: 222 PWDSKRDF 229
           P  ++ D 
Sbjct: 257 PEVTRSDL 264


>gi|392567548|gb|EIW60723.1| hypothetical protein TRAVEDRAFT_120720 [Trametes versicolor
           FP-101664 SS1]
          Length = 248

 Score =  156 bits (394), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 95/227 (41%), Positives = 124/227 (54%), Gaps = 52/227 (22%)

Query: 29  DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLP 87
           DALFVHRDT  +N  V FEF  +N KRA+ IIS YP  +++AAVIPLLDL QRQ+ GW  
Sbjct: 32  DALFVHRDTPYNNPKVPFEFNAENLKRAQEIISHYPPQYKKAAVIPLLDLGQRQNKGWTS 91

Query: 88  ISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSD 147
           IS M+Y+A+ L +P MRVYEVATFYTMF R+PIGE        + +  CTTTPC LR + 
Sbjct: 92  ISVMNYIANLLEMPPMRVYEVATFYTMFNREPIGE--------HFVQVCTTTPCMLRGAY 143

Query: 148 AILE---------------------VIKKKCNMMLER-----------QDLEPKDMEQII 175
            IL+                     VI+ +C                 +DL  +  ++++
Sbjct: 144 DILDTVCGHLGGIKPGETTKDGKFTVIEVECQGACSNAPMLVVGDDFYEDLTAETTKKVL 203

Query: 176 DDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           D    G+KP PGP         QSGR      A   +T+LT +P+GP
Sbjct: 204 DAFAKGEKPKPGP---------QSGRHTSENSA--GLTALTEKPYGP 239


>gi|405122912|gb|AFR97677.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Cryptococcus
           neoformans var. grubii H99]
          Length = 249

 Score =  155 bits (393), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 98/246 (39%), Positives = 135/246 (54%), Gaps = 58/246 (23%)

Query: 20  LSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLA 79
           +S+T RL+ D+LFVHRDT  +N  + FEFTP+N KRA  II+ YP  +++AA +P+LDL 
Sbjct: 24  VSSTSRLS-DSLFVHRDTDYNNPSIPFEFTPENLKRAHEIIARYPPQYKKAAALPILDLG 82

Query: 80  QRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTT 138
           QRQ+ GW  IS M+ VA  L++PKMRVYEVATFYTM+ R+P+    ++         CTT
Sbjct: 83  QRQNQGWTSISVMNAVAKLLDMPKMRVYEVATFYTMYNREPVAPNFVQ--------LCTT 134

Query: 139 TPCWLR--NSDAILEVIKKKCNM--------------------------MLE-----RQD 165
           TPC L    S  ILE I+    +                          M++      +D
Sbjct: 135 TPCQLGGCGSTKILETIESHLGVHPGQTTKDGKFTFVEVECLGACSNAPMMQIGDDYYED 194

Query: 166 LEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPWDS 225
           L P+   +I+D L  G+KP PGP         QSGR  Q  E    +T+LT +P+GP   
Sbjct: 195 LTPETTVKILDALARGEKPKPGP---------QSGR--QTSENSAGLTTLTTKPYGPG-- 241

Query: 226 KRDFCI 231
             +FC+
Sbjct: 242 --EFCL 245


>gi|355706854|gb|AES02773.1| NADH dehydrogenase flavoprotein 2, 24kDa [Mustela putorius furo]
          Length = 110

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/117 (61%), Positives = 91/117 (77%), Gaps = 8/117 (6%)

Query: 39  DDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFL 98
           ++N D  F+FTP+N KR EAI+  YP GH+ AA++P+LDLAQRQ+GWLPISAM+ VA+ L
Sbjct: 2   ENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAILPVLDLAQRQNGWLPISAMNKVAEVL 61

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
            +P MRVYEVATFYTM+ RKP+G        +YH+  CTTTPC LRNSD+ILE I+K
Sbjct: 62  QVPPMRVYEVATFYTMYNRKPVG--------KYHIQVCTTTPCMLRNSDSILEAIQK 110


>gi|321252918|ref|XP_003192563.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Cryptococcus gattii WM276]
 gi|317459032|gb|ADV20776.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Cryptococcus gattii WM276]
          Length = 249

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/263 (38%), Positives = 141/263 (53%), Gaps = 59/263 (22%)

Query: 3   SNLAKLASNVVRQNVRS-LSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIIS 61
           S +    S + R   R+ +S+T RL+ ++LFVHRDT  +N  + FEFTP+N KRA  IIS
Sbjct: 6   SAIQSARSTLARPTRRTFVSSTSRLS-ESLFVHRDTDYNNPSIPFEFTPENLKRAHEIIS 64

Query: 62  IYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
            YP  +++AA +P+LDL QRQ+ GW  IS M+ VA  L++P+MRVYEVATFYTM+ R+P+
Sbjct: 65  RYPPQYKKAAALPILDLGQRQNKGWTSISVMNAVAKLLDMPRMRVYEVATFYTMYNREPV 124

Query: 121 GEERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNM------------------- 159
               ++         CTTTPC L    S  ILE I+    +                   
Sbjct: 125 APNFVQ--------LCTTTPCQLGGCGSTKILETIESHLGIHPGQTTKDGKFTFVEVECL 176

Query: 160 -------MLE-----RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQARE 207
                  M++      +DL P+   +I+D L  G+KP PGP         QSGR  Q  E
Sbjct: 177 GACSNAPMMQIGDEYYEDLTPETTIKILDTLARGEKPKPGP---------QSGR--QTSE 225

Query: 208 AYHDMTSLTGEPHGPWDSKRDFC 230
               +T+LT +P+GP     +FC
Sbjct: 226 NSAGLTTLTTKPYGPG----EFC 244


>gi|50549567|ref|XP_502254.1| YALI0D00737p [Yarrowia lipolytica]
 gi|6689656|emb|CAB65523.1| subunit NUHM of protein NADH:Ubiquinone Oxidoreductase (Complex I)
           [Yarrowia lipolytica]
 gi|49648122|emb|CAG80440.1| YALI0D00737p [Yarrowia lipolytica CLIB122]
          Length = 243

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/223 (39%), Positives = 121/223 (54%), Gaps = 48/223 (21%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMH 92
           VHR+T+++N  + FEF+P+N KRAE +I+ YP  +++AAV+PLLD+ QRQ G+  IS M+
Sbjct: 32  VHRNTENNNPSIPFEFSPENMKRAEEVIAKYPPQYKKAAVMPLLDIGQRQLGYTSISVMN 91

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV 152
           YVA  L +P MRVYEVATFYTM+ R P+G        +YHL  CTTTPC L  SD I+E 
Sbjct: 92  YVAKLLEMPPMRVYEVATFYTMYNRTPMG--------RYHLQICTTTPCQLCGSDGIMEA 143

Query: 153 IKKKCNM--------------------------MLE-----RQDLEPKDMEQIIDDLKAG 181
           ++   N+                          M+       +DL P+   ++++D KAG
Sbjct: 144 VQNTLNIKPGETTKDNLFTLSEVECLGACVNAPMMAINDDYYEDLTPEGTVKLLEDCKAG 203

Query: 182 KKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPWD 224
           K P PGP  +         R C+   A      L+ EPH   D
Sbjct: 204 KMPTPGPENHVR-------RDCEP--ASGQKVLLSKEPHNVAD 237


>gi|384487018|gb|EIE79198.1| hypothetical protein RO3G_03903 [Rhizopus delemar RA 99-880]
          Length = 248

 Score =  152 bits (385), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 97/265 (36%), Positives = 138/265 (52%), Gaps = 56/265 (21%)

Query: 1   MLSNLAKLASN-VVRQNV--RSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAE 57
           ML ++ + A+  + R N+  R+L ++     DA+FVHRDT ++N  + FEF  DNKKR  
Sbjct: 1   MLRSIIRQAAKPLARNNLARRTLYSSPASFSDAIFVHRDTAENNASIPFEFNEDNKKRIS 60

Query: 58  AIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIR 117
            I+  YP  +++AA++PLLDL QRQ+G+  IS M+ VA  L +P MRVYEVATFYTM+ R
Sbjct: 61  EILKKYPEQYKKAAIMPLLDLGQRQNGFTSISVMNEVARLLEVPPMRVYEVATFYTMYNR 120

Query: 118 KPIGEERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNMMLER------------ 163
           +P+G        +Y L  CTTTPC L    S  ILE IK    + +              
Sbjct: 121 QPVG--------KYFLQLCTTTPCQLGGCGSTKILETIKSNLGIEVGETSKDGKFTLVEV 172

Query: 164 -------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRF-C 203
                              +DL P+   +++D+LK+GK    GP         QSGR  C
Sbjct: 173 ECAGACVNAPVMAINDDYYEDLTPETTTKLLDNLKSGKPVKAGP---------QSGRHTC 223

Query: 204 QAREAYHDMTSLTGEPHGPWDSKRD 228
           +     +  T+L  EP+GP    R+
Sbjct: 224 EYAPGVY--TTLNSEPYGPGFRVRE 246


>gi|324507243|gb|ADY43075.1| NADH dehydrogenase ubiquinone flavoprotein 2 [Ascaris suum]
          Length = 280

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 111/203 (54%), Gaps = 50/203 (24%)

Query: 51  DNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVAT 110
            N +R +AI++ YP GH+ AA+IP LD+AQRQHGWLPISAMH VA  L +P+MRVYEVAT
Sbjct: 89  SNLERIKAIMANYPEGHKVAALIPTLDIAQRQHGWLPISAMHEVARILEIPRMRVYEVAT 148

Query: 111 FYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER------- 163
           FYTMF R+P+G        +Y +  C TTPC LR ++++ E  +KK  + +         
Sbjct: 149 FYTMFNRQPVG--------KYLIQVCATTPCMLRGAESLTEAAEKKLGIKVGETTKDGLF 200

Query: 164 ------------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQS 199
                                   +DL P DM  I+ +LKAGK+P PGP         +S
Sbjct: 201 TLMEVECLGACANAPMIQVNDDFYEDLTPSDMNDILSELKAGKRPKPGP---------RS 251

Query: 200 GRFCQAREAYHDMTSLTGEPHGP 222
           GR   A E +   TSL   P GP
Sbjct: 252 GRL--AAEPHGGFTSLKSPPRGP 272


>gi|336269775|ref|XP_003349648.1| hypothetical protein SMAC_03237 [Sordaria macrospora k-hell]
          Length = 271

 Score =  150 bits (378), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/255 (38%), Positives = 131/255 (51%), Gaps = 64/255 (25%)

Query: 20  LSTTQRLNHDALFV-------HRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           LS + R   D L V       HR+T D+N D+ F+F+ +N+K  E II  YP  +++AAV
Sbjct: 36  LSISARRPSDTLMVSAVITIQHRNTPDNNPDIPFKFSAENEKVIEEIIKRYPPQYKKAAV 95

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +PLLDL QRQHG+  IS M+ VA  L +P MRVYEVA+FYTM+ R P+G        ++H
Sbjct: 96  MPLLDLGQRQHGFCSISVMNEVARLLEMPPMRVYEVASFYTMYNRTPVG--------KFH 147

Query: 133 LNWCTTTPCWLR--NSDAILEVIKKKCNM------------MLER--------------- 163
           +  CTTTPC L    SD I++ IK+   +             LE                
Sbjct: 148 VQACTTTPCQLGGCGSDVIVKAIKEHLGIKQGETTPDGLFTFLEVECLGACANAPMVQIN 207

Query: 164 ----QDLEPKDMEQIIDDLK-----AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTS 214
               +DL P+ + Q++  LK     A K P PGP         QSGR  Q  E    +TS
Sbjct: 208 DDYFEDLTPETITQVLVALKESVTDASKAPKPGP---------QSGR--QTCENAAGLTS 256

Query: 215 LTGEPHGPWDSKRDF 229
           LT EP+GP  ++ D 
Sbjct: 257 LTSEPYGPEVTRSDL 271


>gi|326518664|dbj|BAJ92493.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 252

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 87/243 (35%), Positives = 130/243 (53%), Gaps = 53/243 (21%)

Query: 16  NVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPL 75
           +VR +ST+     D LFVHRDT  +N ++KFEF  + +K+ + +IS YP  + +AAVIP+
Sbjct: 22  SVRGISTSIARQSDNLFVHRDTDYNNPNIKFEFNEEYRKKVDTVISRYPKQYRKAAVIPV 81

Query: 76  LDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNW 135
           LDL QRQ+GW  ++ M++VA+ L +P+MRVYEVATFYTM+ R+P+G+  I        ++
Sbjct: 82  LDLGQRQNGWTSLAVMNHVAEVLEMPRMRVYEVATFYTMYNREPVGKHLI--------SY 133

Query: 136 CTTTPCWL-----------------------RNSDAILEVIKKKC------NMMLE---- 162
           C TTPC L                          D    +++ +C        M++    
Sbjct: 134 CGTTPCLLGGVGGKRIWDTMTSHLGGIKNGETTKDGKFTLVEVECLGACSNAPMIQINDD 193

Query: 163 -RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
             +DL P+   +I+D L  G+ P PGP         QS R  +  E    MT+LT  P+G
Sbjct: 194 FYEDLTPESTIKILDALARGETPKPGP---------QSSR--KTSENAQGMTTLTSAPYG 242

Query: 222 PWD 224
           P +
Sbjct: 243 PGE 245


>gi|55233146|gb|AAV48531.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 2 [Aedes
           aegypti]
          Length = 180

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 98/182 (53%), Gaps = 50/182 (27%)

Query: 72  VIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQY 131
           +IPLLDLAQRQHGWLPISAMH VAD L LP MRVYEVATFYTMF+RKP G         Y
Sbjct: 1   MIPLLDLAQRQHGWLPISAMHRVADILGLPNMRVYEVATFYTMFMRKPTG--------TY 52

Query: 132 HLNWCTTTPCWLRNSDAILEVIKKKCNMMLER---------------------------- 163
           H+  CTTTPCWLR SD I+   K+K  +                                
Sbjct: 53  HVQVCTTTPCWLRGSDEIMTACKEKLGIGAGETTKDGKFTISEVECLGACVNAPMIAVND 112

Query: 164 ---QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPH 220
              +DL  KD  +I+ DLK GK P PGP         ++GRF  A E    +TSLT EP 
Sbjct: 113 DYYEDLTAKDTIEILSDLKQGKVPRPGP---------RNGRF--ASEPTGGLTSLTEEPK 161

Query: 221 GP 222
           GP
Sbjct: 162 GP 163


>gi|146420905|ref|XP_001486405.1| hypothetical protein PGUG_02076 [Meyerozyma guilliermondii ATCC
           6260]
 gi|146389820|gb|EDK37978.1| hypothetical protein PGUG_02076 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 251

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/122 (58%), Positives = 89/122 (72%), Gaps = 8/122 (6%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMH 92
           VHR+TK DN D+ FEF  DN KRA+ II+ YP  +++AAV+PLLDL QRQHG+  IS M+
Sbjct: 41  VHRNTKVDNPDIPFEFNADNLKRAKEIIAKYPPQYKKAAVMPLLDLGQRQHGFTAISVMN 100

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV 152
           YVA  L++P MRVYEVATFYTM+ RKP+G        +YHL  CTTTPC L  SD +++ 
Sbjct: 101 YVAKMLDMPPMRVYEVATFYTMYNRKPMG--------KYHLQVCTTTPCQLCGSDEVMDA 152

Query: 153 IK 154
           IK
Sbjct: 153 IK 154


>gi|367023955|ref|XP_003661262.1| hypothetical protein MYCTH_2300433 [Myceliophthora thermophila ATCC
           42464]
 gi|347008530|gb|AEO56017.1| hypothetical protein MYCTH_2300433 [Myceliophthora thermophila ATCC
           42464]
          Length = 259

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/267 (36%), Positives = 136/267 (50%), Gaps = 60/267 (22%)

Query: 4   NLAKLASNVVRQ---NVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
            +A+ AS V R      R+ S + R   D L VHR+T D+N D+ F+FT  N++    I+
Sbjct: 12  TVARTASRVARPMALPTRAFSLSARNQSDTLMVHRNTPDNNPDIPFKFTEQNERIIAEIL 71

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
             YP  +++AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R P+
Sbjct: 72  KRYPPQYKKAAVMPLLDLGQRQHGFTSISVMNEVARILEMPPMRVYEVATFYTMYNRTPV 131

Query: 121 GEERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNM------------------- 159
           G        ++H+  CTTTPC L    SDAI++ IK+   +                   
Sbjct: 132 G--------KFHVQACTTTPCQLGGCGSDAIVQAIKEHLGIKQGETTKDGLFTFTEVECL 183

Query: 160 -------MLE-----RQDLEPKDMEQIIDDLK-----AGKKPAPGPSGYTSGIGSQSGRF 202
                  M++      +DL P+ ++ ++  LK       K P PGP         QSGR 
Sbjct: 184 GACVNAPMVQINDDYYEDLTPETIKSLLTALKESVTDVSKAPKPGP---------QSGR- 233

Query: 203 CQAREAYHDMTSLTGEPHGPWDSKRDF 229
            +  E    +TSLT EP G   ++ D 
Sbjct: 234 -KTCENSAGITSLTSEPWGIEKTRDDL 259


>gi|156055076|ref|XP_001593462.1| hypothetical protein SS1G_04889 [Sclerotinia sclerotiorum 1980]
 gi|154702674|gb|EDO02413.1| hypothetical protein SS1G_04889 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 292

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 74/152 (48%), Positives = 100/152 (65%), Gaps = 13/152 (8%)

Query: 6   AKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPV 65
           A++AS   R   RS   + RL+ D L VHRDT ++N  + F+FTP N+K  E I+  YP 
Sbjct: 17  ARIAS---RSQYRSFVASSRLSSDTLNVHRDTPENNASIPFKFTPQNEKLVEEILKRYPP 73

Query: 66  GHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERI 125
            +++AAV+P+LDL QRQHG+  +S M+ VA  L +P MRVYEVATFYTM+ R P+G    
Sbjct: 74  QYKKAAVMPILDLGQRQHGFTSLSVMNEVARLLEMPPMRVYEVATFYTMYNRNPVG---- 129

Query: 126 KSILQYHLNWCTTTPCWLR--NSDAILEVIKK 155
               +YHL  CTTTPC L    SDAI++ I++
Sbjct: 130 ----KYHLQVCTTTPCQLGGCGSDAIVKTIEQ 157


>gi|443925847|gb|ELU44608.1| NADH-ubiquinone oxidoreductase subunit [Rhizoctonia solani AG-1 IA]
          Length = 256

 Score =  146 bits (368), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 98/256 (38%), Positives = 127/256 (49%), Gaps = 62/256 (24%)

Query: 15  QNVRSLSTTQRLNHDALFVHRD----------TK-----------DDNLDVKFEFTPDNK 53
            N+R  S       DALFV R           T+             ++ + F+FT +N 
Sbjct: 16  HNIRPFSNAAPRRSDALFVVRSLCGIEVGCVLTRACIHLRKQVLIGCDMKIPFKFTDENL 75

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFY 112
           K AE  I+ YP  +++AAVIPLLDLAQRQ+ GW  ISAM+YVA+ L +P MRVYEVATFY
Sbjct: 76  KVAEETIAKYPPQYKKAAVIPLLDLAQRQNKGWTSISAMNYVAELLEMPPMRVYEVATFY 135

Query: 113 TMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK----------------- 155
           TMF R+PIG   I+         CTTTPC LR S  ILE +K                  
Sbjct: 136 TMFNREPIGTNFIQ--------VCTTTPCMLRGSTEILETVKSHLGGIKVGDTTKDGKFT 187

Query: 156 ----KCNMMLERQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHD 211
               +C      +DL P+  ++I+D    G+KP PGP         QSGR  Q  E    
Sbjct: 188 LAEVECLGACSNEDLTPETTKKILDAFAKGEKPKPGP---------QSGR--QTSENSAG 236

Query: 212 MTSLTGEPHGPWDSKR 227
           +T+LT +     +S R
Sbjct: 237 LTALTSKSTAHPNSHR 252


>gi|392575775|gb|EIW68907.1| hypothetical protein TREMEDRAFT_68856 [Tremella mesenterica DSM
           1558]
          Length = 249

 Score =  145 bits (367), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 90/228 (39%), Positives = 122/228 (53%), Gaps = 53/228 (23%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPIS 89
           LFVHRDT  +N  + F FTPDN KRA+ IIS YP  +++AAV+P+LDL QRQ+ GW  IS
Sbjct: 34  LFVHRDTDYNNPSIPFTFTPDNLKRAKEIISRYPPQYKKAAVMPILDLGQRQNKGWTSIS 93

Query: 90  AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLR--NSD 147
            M+ VA+ L +P+MRVYEVATFYTM+ R+P+ E          L  CTTTPC L    S 
Sbjct: 94  VMNAVAELLEMPRMRVYEVATFYTMYNREPVAEN--------FLQLCTTTPCQLGGCGSS 145

Query: 148 AILEVIKKKCNM--------------------------MLE-----RQDLEPKDMEQIID 176
            IL  I+    +                          M++      +DL P+   +++D
Sbjct: 146 KILHTIQDHLKISPGQTTKDGKFTLIEVECLGACSNAPMMQIGDDFYEDLTPETTIKLLD 205

Query: 177 DLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPWD 224
            L  G+KP PGP         Q+GR  +  E    +T+LT +P GP +
Sbjct: 206 ALATGEKPKPGP---------QTGR--KTSENAAGLTALTSKPLGPGE 242


>gi|347441767|emb|CCD34688.1| similar to NADH-ubiquinone oxidoreductase 24 kDa subunit
           [Botryotinia fuckeliana]
          Length = 292

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/151 (48%), Positives = 99/151 (65%), Gaps = 13/151 (8%)

Query: 6   AKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPV 65
           A++AS   R   RS     RL+ D+L VHRDT D+N  + F+FTP N+K  E I+  YP 
Sbjct: 17  ARIAS---RSQCRSFVAGSRLSSDSLMVHRDTPDNNASIPFKFTPQNEKIIEEILKKYPP 73

Query: 66  GHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERI 125
            +++AAV+P+LDL QRQHG+  +S M+ VA  L +P MRVYEVATFYTM+ R P+G    
Sbjct: 74  QYKKAAVMPILDLGQRQHGFTSLSVMNEVARLLEMPPMRVYEVATFYTMYNRTPVG---- 129

Query: 126 KSILQYHLNWCTTTPCWLR--NSDAILEVIK 154
               ++H+  CTTTPC L    SDAI++ I+
Sbjct: 130 ----KFHVQACTTTPCQLGGCGSDAIVKAIE 156


>gi|448514355|ref|XP_003867092.1| NADH dehydrogenase [Candida orthopsilosis Co 90-125]
 gi|380351430|emb|CCG21654.1| NADH dehydrogenase [Candida orthopsilosis Co 90-125]
          Length = 239

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/147 (48%), Positives = 98/147 (66%), Gaps = 8/147 (5%)

Query: 8   LASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGH 67
           L+  + + +V S+  T +     + VHR+TK+DN  + FEFT +NKKRA+ II+ YP  +
Sbjct: 2   LSRIISKSSVLSVFNTSKRYSSIISVHRETKEDNTSLPFEFTSENKKRADEIIAKYPPQY 61

Query: 68  ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKS 127
           ++ A +PLLDL QRQ G+  IS M+YVA  L++P MRVYEVATFYTM+ R P+G      
Sbjct: 62  KKGATMPLLDLGQRQLGFTSISVMNYVAKLLDMPPMRVYEVATFYTMYNRHPMG------ 115

Query: 128 ILQYHLNWCTTTPCWLRNSDAILEVIK 154
             +Y++  CTTTPC L  SD I+E IK
Sbjct: 116 --KYNVQVCTTTPCQLCGSDGIMEAIK 140


>gi|440637420|gb|ELR07339.1| NADH dehydrogenase flavoprotein 2 [Geomyces destructans 20631-21]
          Length = 265

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/251 (35%), Positives = 130/251 (51%), Gaps = 43/251 (17%)

Query: 12  VVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAA 71
            +R   R+   + R+  D+LFVHRD+ D+N  + F+F   N    + I++ YP  +++AA
Sbjct: 24  AIRSQRRAFVASCRVASDSLFVHRDSADNNASIPFKFNEQNNAVIKEILARYPPQYKKAA 83

Query: 72  VIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQY 131
           V+P+LDL QRQHG+  +S M+ VA  L +P MRVYEVATFYTM+ R P+G        +Y
Sbjct: 84  VMPILDLGQRQHGFTSLSVMNEVARLLEMPPMRVYEVATFYTMYNRTPVG--------KY 135

Query: 132 HLNWCTTTPCWLR--NSDAILEVIK----------KKCNMM--LE--------------- 162
           H+  CTTTPC L    SDAI++ I+           K N+   LE               
Sbjct: 136 HVQVCTTTPCQLGGCGSDAIVKAIEGHLGVHNGQTTKDNLFTYLEVECLGACVNAPMVQI 195

Query: 163 ----RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGE 218
                +DL P+ +  ++  L+A  K   G        G  SGR  ++ E    +TSL GE
Sbjct: 196 NDDYYEDLTPESIVALLKALEASAKDVAGTPSKVPAPGPASGR--ESCEPTGGLTSLKGE 253

Query: 219 PHGPWDSKRDF 229
           P G    K++F
Sbjct: 254 PWGKELFKKEF 264


>gi|255723752|ref|XP_002546805.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Candida tropicalis MYA-3404]
 gi|240134696|gb|EER34250.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Candida tropicalis MYA-3404]
          Length = 241

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/153 (50%), Positives = 98/153 (64%), Gaps = 12/153 (7%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           MLS L   +S V        ST  +     + VHRDTK+DN ++ FEFT +NKKRAE II
Sbjct: 1   MLSRLITRSSQVGAFT----STIPKRYSSIISVHRDTKEDNPNIPFEFTSENKKRAEEII 56

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           + YP  +++ A +PLLDL QRQ G+  IS M+YVA  L++P MRVYEVATFYTM+ R P+
Sbjct: 57  AKYPPQYKKGACMPLLDLGQRQLGFTSISVMNYVAKLLDMPPMRVYEVATFYTMYNRHPM 116

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVI 153
           G        +Y+L  CTTTPC L  SD I+E I
Sbjct: 117 G--------KYNLQVCTTTPCQLCGSDGIMEAI 141


>gi|169600549|ref|XP_001793697.1| hypothetical protein SNOG_03113 [Phaeosphaeria nodorum SN15]
 gi|111068724|gb|EAT89844.1| hypothetical protein SNOG_03113 [Phaeosphaeria nodorum SN15]
          Length = 294

 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 69/154 (44%), Positives = 99/154 (64%), Gaps = 8/154 (5%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           M  +  + +    R   R+ S ++    D+L VHRDT ++N ++ FEFT  NK+  + I+
Sbjct: 9   MFRSAPRASRQFQRAQWRAFSVSRPARSDSLNVHRDTPENNANIPFEFTAQNKELIKEIV 68

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           S YP  +++AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R P 
Sbjct: 69  SRYPSQYKKAAVMPLLDLGQRQHGFTSISVMNEVARILEMPPMRVYEVATFYTMYNRNPT 128

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIK 154
           G        ++H+  CTTTPC LR+SDA+++  +
Sbjct: 129 G--------KFHVQICTTTPCMLRDSDAVMKACE 154


>gi|452840610|gb|EME42548.1| hypothetical protein DOTSEDRAFT_73410 [Dothistroma septosporum
           NZE10]
          Length = 295

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 130/248 (52%), Gaps = 40/248 (16%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           +  + ++   + +R+  R+   +      +L VHR+T D+N D+ F+F   N++  + ++
Sbjct: 9   LFRSSSRTVRSCIREQRRTFQVSSIAKSASLNVHRNTPDNNPDIPFQFNKQNEELIKEVL 68

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           S YP  +++AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R P+
Sbjct: 69  SRYPSQYKKAAVMPLLDLGQRQHGFTSISVMNEVARVLEMPPMRVYEVATFYTMYNRNPV 128

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM--------------------- 159
           G        ++H+  CTTTPC LR SD I++ I+    +                     
Sbjct: 129 G--------RFHIQCCTTTPCQLRGSDGIMKAIEDHLGIHHGETTKDNIFTLTEVECLGA 180

Query: 160 -----MLE-----RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAY 209
                M++      +DL P+  +Q++D LK   +   G SG+  G+   SG+   + E+ 
Sbjct: 181 CANAPMVQINDDYYEDLTPETTKQLLDALKEAAEKT-GASGWAPGLAGDSGKDQVSGEST 239

Query: 210 HDMTSLTG 217
            +   L G
Sbjct: 240 GNKLKLGG 247


>gi|354546963|emb|CCE43696.1| hypothetical protein CPAR2_213390 [Candida parapsilosis]
          Length = 239

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 99/147 (67%), Gaps = 8/147 (5%)

Query: 8   LASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGH 67
           L+  + + +V ++  T +     + VHR+TK+DN ++ FEFT +NKKRA+ II+ YP  +
Sbjct: 2   LSRFISKSSVSTVLNTSKRYSSIISVHRETKEDNTNIPFEFTSENKKRADEIIAKYPPQY 61

Query: 68  ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKS 127
           ++ A +PLLDL QRQ G+  I+ M+YVA  L++P MRVYEVATFYTM+ R P+G      
Sbjct: 62  KKGATMPLLDLGQRQLGFTSIAVMNYVAKLLDMPPMRVYEVATFYTMYNRHPMG------ 115

Query: 128 ILQYHLNWCTTTPCWLRNSDAILEVIK 154
             +Y++  CTTTPC L  SD I++ IK
Sbjct: 116 --KYNVQVCTTTPCQLCGSDGIMDAIK 140


>gi|384494506|gb|EIE84997.1| hypothetical protein RO3G_09707 [Rhizopus delemar RA 99-880]
          Length = 248

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/265 (35%), Positives = 137/265 (51%), Gaps = 56/265 (21%)

Query: 1   MLSNLAKLASN-VVRQNV--RSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAE 57
           ML +L + A+  +VR N   R+L ++     +A+FVHRDT ++N ++ F+F  DNKKR  
Sbjct: 1   MLRSLVRQAAKPLVRNNFIRRTLHSSPAYFSEAIFVHRDTLENNANIPFKFDEDNKKRIS 60

Query: 58  AIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIR 117
            I+  YP  +++AA++PLLDL QRQ+G+  IS M+ VA  L +P MRVYEVATFYTM+ R
Sbjct: 61  EILKKYPEQYKKAAIMPLLDLGQRQNGFTSISVMNEVARLLEVPPMRVYEVATFYTMYNR 120

Query: 118 KPIGEERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNMMLER------------ 163
           +P+G        +Y L  CTTTPC L    S  IL  IK+   + +              
Sbjct: 121 QPVG--------KYFLQLCTTTPCQLGGCGSTKILNTIKENLGIEVGETTKDGKFTLVEV 172

Query: 164 -------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRF-C 203
                              +DL P+   +++++LK  K    GP         QSGR  C
Sbjct: 173 ECAGACVNAPVMAINDDYYEDLTPETTIKLLENLKTDKPVKAGP---------QSGRHTC 223

Query: 204 QAREAYHDMTSLTGEPHGPWDSKRD 228
           +     +  T+L  EP+GP    R+
Sbjct: 224 EYAPGVY--TTLNSEPYGPGFRVRE 246


>gi|449299667|gb|EMC95680.1| hypothetical protein BAUCODRAFT_498931 [Baudoinia compniacensis
           UAMH 10762]
          Length = 295

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 67/146 (45%), Positives = 94/146 (64%), Gaps = 8/146 (5%)

Query: 14  RQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVI 73
           RQ  RS  T      +   VHRDT D+N  + F+F   N+K  + ++S YP  +++AAV+
Sbjct: 22  RQQRRSFQTATVRRSETFVVHRDTPDNNPSIPFKFNAQNEKLIQEVLSRYPSQYKKAAVM 81

Query: 74  PLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHL 133
           PLLDL QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R P+G        ++H+
Sbjct: 82  PLLDLGQRQHGFTSISVMNEVARILEMPPMRVYEVATFYTMYNRNPVG--------RFHV 133

Query: 134 NWCTTTPCWLRNSDAILEVIKKKCNM 159
             CTTTPC LR SD+I++ I+++  +
Sbjct: 134 QCCTTTPCQLRGSDSIMKAIEEQLGI 159


>gi|68472685|ref|XP_719661.1| potential mitochondrial Complex I, NUHM_24kd subunit [Candida
           albicans SC5314]
 gi|68472944|ref|XP_719537.1| potential mitochondrial Complex I, NUHM_24kd subunit [Candida
           albicans SC5314]
 gi|46441359|gb|EAL00657.1| potential mitochondrial Complex I, NUHM_24kd subunit [Candida
           albicans SC5314]
 gi|46441488|gb|EAL00785.1| potential mitochondrial Complex I, NUHM_24kd subunit [Candida
           albicans SC5314]
 gi|238881854|gb|EEQ45492.1| hypothetical protein CAWG_03820 [Candida albicans WO-1]
          Length = 243

 Score =  142 bits (359), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 69/133 (51%), Positives = 91/133 (68%), Gaps = 8/133 (6%)

Query: 21  STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQ 80
           ST  +     + VHRDTK+DN ++ FEF  +NKKRAE II+ YP  +++ A +PLLDL Q
Sbjct: 19  STVSKRYSSIISVHRDTKEDNPNIAFEFNSENKKRAEEIIAKYPPQYKKGACMPLLDLGQ 78

Query: 81  RQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTP 140
           RQ G+  IS M+YVA  L++P MRVYEVATFYTM+ R P+G        +Y+L  CTTTP
Sbjct: 79  RQLGFTSISVMNYVAKLLDMPPMRVYEVATFYTMYNRHPMG--------KYNLQVCTTTP 130

Query: 141 CWLRNSDAILEVI 153
           C L  SD+I++ I
Sbjct: 131 CQLCGSDSIMKAI 143


>gi|344303318|gb|EGW33592.1| hypothetical protein SPAPADRAFT_60931 [Spathaspora passalidarum
           NRRL Y-27907]
          Length = 238

 Score =  142 bits (359), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 97/147 (65%), Gaps = 8/147 (5%)

Query: 8   LASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGH 67
           + S  + ++V  +ST  +     + VHRDT +DN ++ FEF  +N KRA+ II+ YP  +
Sbjct: 1   MLSRYISKSVGQVSTVAKRYSSIISVHRDTTEDNQNIPFEFNSENLKRAQEIIAKYPPQY 60

Query: 68  ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKS 127
           ++ A +PLLDL QRQ G+  IS M+YVA  L++P MRVYEVATFYTM+ RKP+G      
Sbjct: 61  KKGACMPLLDLGQRQLGFTSISVMNYVAKMLDMPPMRVYEVATFYTMYNRKPMG------ 114

Query: 128 ILQYHLNWCTTTPCWLRNSDAILEVIK 154
             +Y+L  CTTTPC L  SD I++ ++
Sbjct: 115 --KYNLQVCTTTPCQLCGSDGIMKAVR 139


>gi|452981265|gb|EME81025.1| hypothetical protein MYCFIDRAFT_165834 [Pseudocercospora fijiensis
           CIRAD86]
          Length = 295

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 131/243 (53%), Gaps = 40/243 (16%)

Query: 6   AKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPV 65
           +++  + ++Q  R+L  +      +L VHR+T+ +N D+ FEF   NK+  + ++S YP 
Sbjct: 14  SQMLRSSIKQQRRALQVSSVSRSASLMVHRNTEVNNPDIPFEFNAQNKELIKEVLSRYPS 73

Query: 66  GHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERI 125
            +++AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R P+G    
Sbjct: 74  QYKKAAVMPLLDLGQRQHGFTSISVMNEVARILEMPPMRVYEVATFYTMYNRNPVG---- 129

Query: 126 KSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM-------------------------- 159
               ++H+  CTTTPC L  SD +++ I+++  +                          
Sbjct: 130 ----RFHVQCCTTTPCQLNGSDGVMKAIEEELGIHHGETTKDNIFTFTEVECLGACANAP 185

Query: 160 MLE-----RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTS 214
           M++      +DL P+  ++++  L+   +   G SG+  G+  +SG+   + E+    T 
Sbjct: 186 MVQINDDYYEDLTPETTKELLRALREAAEKT-GASGWAPGLAGESGKNQVSGESTGRKTK 244

Query: 215 LTG 217
           L G
Sbjct: 245 LGG 247


>gi|149248594|ref|XP_001528684.1| hypothetical protein LELG_01204 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146448638|gb|EDK43026.1| hypothetical protein LELG_01204 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 246

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/152 (48%), Positives = 102/152 (67%), Gaps = 13/152 (8%)

Query: 5   LAKLASNVVRQNVRSLSTTQ--RLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISI 62
           L++L S++    VR+ +TT   + +   + VHR+TK+DN  + FEF  +NKKRAE II+ 
Sbjct: 2   LSRLISSI---PVRATATTHIAKRSSSIISVHRETKEDNTTLPFEFNSENKKRAEEIIAK 58

Query: 63  YPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGE 122
           YP  +++ A +PLLDL QRQ G+  IS M+YVA  L++P MRVYEVATFYTM+ R P+G 
Sbjct: 59  YPPQYKKGACMPLLDLGQRQLGFTSISVMNYVAKLLDMPPMRVYEVATFYTMYNRHPMG- 117

Query: 123 ERIKSILQYHLNWCTTTPCWLRNSDAILEVIK 154
                  +Y++  CTTTPC L  SD I++ IK
Sbjct: 118 -------KYNIQVCTTTPCQLCGSDGIMDAIK 142


>gi|320582430|gb|EFW96647.1| NADH-ubiquinone oxidoreductase subunit, mitochondrial precursor
           [Ogataea parapolymorpha DL-1]
          Length = 234

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/127 (50%), Positives = 93/127 (73%), Gaps = 8/127 (6%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMH 92
           VHRD + +N  +KFEFTP+NK+ A+ I+  YP  ++++AV+PLLDL QRQ G+  I+ M+
Sbjct: 26  VHRDNQHNNQKMKFEFTPENKELAKEIVKRYPPQYKKSAVMPLLDLGQRQAGFTSIAVMN 85

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV 152
           +VA+ L++P MRVYEVA+FYTM+ R+P+G        +YH+  CTTTPC L NSD+++E 
Sbjct: 86  HVAELLDMPAMRVYEVASFYTMYHREPVG--------KYHIQICTTTPCQLCNSDSVIEA 137

Query: 153 IKKKCNM 159
           I K  N+
Sbjct: 138 IMKHLNL 144


>gi|241950587|ref|XP_002418016.1| subunit of NADH-ubiquinone oxidoreductase, mitochondrial precursor,
           putative [Candida dubliniensis CD36]
 gi|223641355|emb|CAX43315.1| subunit of NADH-ubiquinone oxidoreductase, mitochondrial precursor,
           putative [Candida dubliniensis CD36]
          Length = 243

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/133 (51%), Positives = 90/133 (67%), Gaps = 8/133 (6%)

Query: 21  STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQ 80
           ST  +     + VHRDTK+DN ++ FEF  +NKKRAE II+ YP  +++ A +PLLDL Q
Sbjct: 19  STVSKRYSSIISVHRDTKEDNPNIPFEFNSENKKRAEEIIAKYPPQYKKGACMPLLDLGQ 78

Query: 81  RQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTP 140
           RQ G+  IS M+YVA  L++P MRVYEVATFYTM+ R P+G        +Y+L  CTTTP
Sbjct: 79  RQLGFTSISVMNYVAKLLDMPPMRVYEVATFYTMYNRHPMG--------KYNLQVCTTTP 130

Query: 141 CWLRNSDAILEVI 153
           C L  SD I++ I
Sbjct: 131 CQLCGSDGIMKAI 143


>gi|402081979|gb|EJT77124.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Gaeumannomyces
           graminis var. tritici R3-111a-1]
          Length = 260

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/270 (32%), Positives = 133/270 (49%), Gaps = 51/270 (18%)

Query: 1   MLSNLAKLASNVVRQ--------NVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDN 52
           M S L+ L    VR          +R++STT     D L VHRDT D+N D+ F+F+  N
Sbjct: 1   MASKLSPLFRTAVRSACRRASQPQIRAISTTAARRSDTLMVHRDTADNNPDIPFKFSAQN 60

Query: 53  KKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFY 112
           +K    ++  YP  +++AAV+PLLD+ QRQHG+  IS M+ VA  L +P MRVYEVA+FY
Sbjct: 61  EKVIAQVLKRYPPQYKKAAVMPLLDIGQRQHGFTSISVMNEVARLLEMPPMRVYEVASFY 120

Query: 113 TMFIRKPIGEERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNM----------- 159
           TM+ R P+G        ++ +  CTTTPC L    SD I++ I++   +           
Sbjct: 121 TMYNRTPVG--------KFFVQACTTTPCQLGGCGSDVIVKAIREHLGIEQGQTTKDGLF 172

Query: 160 ---------------MLE-----RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQS 199
                          M++      +DL P+ ++ ++  LK    P  G        G  S
Sbjct: 173 TFIEVECLGACVNAPMIQINDDYYEDLTPESVKSLLTALKESAAPGAGKKASVPKPGPLS 232

Query: 200 GRFCQAREAYHDMTSLTGEPHGPWDSKRDF 229
           GR     E    +T+LT +P G   +++D 
Sbjct: 233 GR--DTCENSAGLTNLTSQPWGIETTRKDL 260


>gi|358387941|gb|EHK25535.1| hypothetical protein TRIVIDRAFT_62211 [Trichoderma virens Gv29-8]
          Length = 259

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/262 (34%), Positives = 132/262 (50%), Gaps = 44/262 (16%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           +L +  + AS V R   R+ S T     D L VHR+T D+N D+ FEF   N+K    I+
Sbjct: 9   LLRSGVRCASRVARPQARAFSITASRPSDTLQVHRNTPDNNPDLPFEFNAQNEKLIAEIL 68

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
             YP  +++AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVA+FYTM+ R P+
Sbjct: 69  KRYPAQYKKAAVMPLLDLGQRQHGFTSISVMNEVARLLEMPPMRVYEVASFYTMYNRTPV 128

Query: 121 GEERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNM------------------- 159
           G        ++ +  CTTTPC L    SDAI++ I     +                   
Sbjct: 129 G--------KFFVQACTTTPCQLGGCGSDAIVKAITNHLGIKQGETTKDGLFTFIEVECL 180

Query: 160 -------MLE-----RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQARE 207
                  M++      +DL P+ + +++D LK+      G +      G  +GR  ++ E
Sbjct: 181 GACVNAPMIQINDDYYEDLTPETVVKLLDALKSTAASV-GSTAKAPAAGPLTGR--KSCE 237

Query: 208 AYHDMTSLTGEPHGPWDSKRDF 229
               +T+LT EP G   ++ D 
Sbjct: 238 NSAGLTNLTAEPWGVEKTRSDL 259


>gi|171691979|ref|XP_001910914.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945938|emb|CAP72739.1| unnamed protein product [Podospora anserina S mat+]
          Length = 260

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/251 (36%), Positives = 128/251 (50%), Gaps = 57/251 (22%)

Query: 17  VRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLL 76
            R++S + R   D L VHR+T D+N  + F+FT  N+K    I+  YP  +++AAV+PLL
Sbjct: 29  TRAISMSARRQSDTLMVHRNTPDNNPSIPFKFTDQNEKIITEILKRYPPQYKKAAVMPLL 88

Query: 77  DLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWC 136
           DL QRQHG+  IS M+ VA  L +P MRVYEVA+FYTM+ R P+G        ++H+  C
Sbjct: 89  DLGQRQHGFTSISVMNEVARILEMPPMRVYEVASFYTMYNRTPVG--------KFHVQAC 140

Query: 137 TTTPCWLR--NSDAILEVIKKKCNM--------------------------MLE-----R 163
           TTTPC L    SDAI++ IK+   +                          M++      
Sbjct: 141 TTTPCQLGGCGSDAIVKAIKEHLGIKQGETTPDGLFTFIEVECLGACVNAPMVQINDEYY 200

Query: 164 QDLEPKDMEQIIDDLK-----AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGE 218
           +DL P+  +Q++  LK     A K P PGP          SGR     E    +T+LT E
Sbjct: 201 EDLTPETTKQLLTALKESLNDASKAPKPGPV---------SGR--DTCENSAGLTNLTSE 249

Query: 219 PHGPWDSKRDF 229
           P G   ++ D 
Sbjct: 250 PWGVETTRSDL 260


>gi|86279690|gb|ABC94500.1| NADH dehydrogenase flavoprotein 2 [Ictalurus punctatus]
          Length = 124

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/119 (59%), Positives = 89/119 (74%), Gaps = 2/119 (1%)

Query: 5   LAKLASNVVRQNVRSLSTTQ-RLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIY 63
           L    S+  RQ VRSL  +  R     +FVHRDT ++N D  FEFTP+N KR EAII+ Y
Sbjct: 7   LRSAVSHAGRQ-VRSLHRSAVRTGAGGVFVHRDTPENNPDTPFEFTPENMKRVEAIITNY 65

Query: 64  PVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGE 122
           P GH++AA IP+LDLAQRQHGWLPISAM+ VA+ L++  MRV+EVATFYTMF R+P+G+
Sbjct: 66  PEGHKQAATIPVLDLAQRQHGWLPISAMNKVAEILDVSPMRVHEVATFYTMFNRQPVGK 124


>gi|358390245|gb|EHK39651.1| hypothetical protein TRIATDRAFT_302977 [Trichoderma atroviride IMI
           206040]
          Length = 259

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/265 (33%), Positives = 136/265 (51%), Gaps = 50/265 (18%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           +L +  + AS V R  +R+ S T     D L VHR++ D+N D+ F+F   N+K    I+
Sbjct: 9   LLRSGVRCASRVARPQIRAFSITASRPSDTLQVHRNSPDNNPDIPFKFNAQNEKLIAEIL 68

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
             YP  +++AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVA+FYTM+ R P+
Sbjct: 69  KRYPAQYKKAAVMPLLDLGQRQHGFTSISVMNEVARLLEMPPMRVYEVASFYTMYNRTPV 128

Query: 121 GEERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNM------------------- 159
           G        ++ +  CTTTPC L    SD I++ IK    +                   
Sbjct: 129 G--------KFFVQACTTTPCQLGGCGSDVIVKAIKNHLGIKQGETTKDGLFTFIEVECL 180

Query: 160 -------MLE-----RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQARE 207
                  M++      +DL P+ + ++++DLKA      G S  +S     +G    +RE
Sbjct: 181 GACVNAPMIQINDDYYEDLTPETVVKLLEDLKAT-----GTSATSSKKAPVAGPL-SSRE 234

Query: 208 AYHD---MTSLTGEPHGPWDSKRDF 229
           +  +   +T+LT EP G   ++ D 
Sbjct: 235 SCENSAGLTNLTAEPWGAEKTRSDL 259


>gi|254568298|ref|XP_002491259.1| hypothetical protein [Komagataella pastoris GS115]
 gi|238031056|emb|CAY68979.1| Hypothetical protein PAS_chr2-1_0359 [Komagataella pastoris GS115]
 gi|308152248|emb|CBI83543.1| NUHM (24 kDa) subunit of mitochondrial NADH:ubiquinone
           oxidoreductase (complex I) [Komagataella pastoris]
 gi|328352223|emb|CCA38622.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Komagataella
           pastoris CBS 7435]
          Length = 241

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/240 (35%), Positives = 126/240 (52%), Gaps = 41/240 (17%)

Query: 2   LSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIIS 61
           L  L   A+  ++Q + ++ T +R +H  + VHRDT  DN ++ FEFT +N +RA+ II+
Sbjct: 3   LLRLLPKATKPLQQRIVTV-TPKRFSH-MISVHRDTPKDNPEIPFEFTKENLERAKEIIA 60

Query: 62  IYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIG 121
            YP  +++ AV+PLLDL QRQ G+  IS M+YVA +L++P MRVYEVATFYTM+ RKP+G
Sbjct: 61  KYPPQYKKGAVMPLLDLGQRQLGFTSISVMNYVAKYLDMPPMRVYEVATFYTMYNRKPMG 120

Query: 122 EERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER------------------ 163
                   +Y++  CTTTPC L  SD I++ I +   +   +                  
Sbjct: 121 --------KYNVQVCTTTPCQLCGSDGIMKAITEHLQIRPGQTTPDNLFTLQEVECLGAC 172

Query: 164 -------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYH 210
                        +DL P+   +I+   ++G  P PGP+   S       +       YH
Sbjct: 173 VNAPMIAVNDDFYEDLTPERTVEILKGFQSGDIPKPGPADRHSCEPHSGPKVLTNETPYH 232


>gi|320592175|gb|EFX04614.1| NADH-ubiquinone dehydrogenase [Grosmannia clavigera kw1407]
          Length = 272

 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 90/248 (36%), Positives = 131/248 (52%), Gaps = 48/248 (19%)

Query: 17  VRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLL 76
           +R+LS + R     L VHR+T D+N D+ F+F+ DNK   + I+  YP  +++AAV+PLL
Sbjct: 38  MRALSASARRASATLQVHRNTADNNPDIPFQFSADNKNVIQEILKRYPPQYKKAAVMPLL 97

Query: 77  DLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWC 136
           DL QRQHG+  IS M+ VA  L +P MRVYEVA+FYTM+ R P+G        +Y +  C
Sbjct: 98  DLGQRQHGFTSISVMNEVARLLEMPPMRVYEVASFYTMYNRTPVG--------KYFVQAC 149

Query: 137 TTTPCWLR--NSDAILEVIKKKCNM--------------------------MLE-----R 163
           TTTPC L    SD I++ IK+   +                          M++      
Sbjct: 150 TTTPCQLGGCGSDVIVKAIKEHLGIKQGETTADGLFTFIEVECLGACVNAPMIQINDHYY 209

Query: 164 QDLEPKDMEQIIDDLKAGKKPAPGPSGYT--SGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
           +DL P+ ++ ++  LKA    A  PSG T    +G  +GR   + E    +TSLT +P G
Sbjct: 210 EDLTPETVKSLLSGLKAA---ALDPSGKTPEPKVGPTTGR--HSCENSAGLTSLTDKPWG 264

Query: 222 PWDSKRDF 229
              ++ D 
Sbjct: 265 VETTRSDL 272


>gi|116180112|ref|XP_001219905.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|88184981|gb|EAQ92449.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 262

 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 92/265 (34%), Positives = 130/265 (49%), Gaps = 60/265 (22%)

Query: 6   AKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPV 65
           A  A+  +    R+ S + R   D L VHR+T D+N D+ F+FT  N+     ++  YP 
Sbjct: 17  ASRAARPIAPATRAFSLSARKQSDTLMVHRNTPDNNPDIPFKFTKQNEAIITEVLKRYPP 76

Query: 66  GHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERI 125
            +++AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVA+FYTM+ R P+G    
Sbjct: 77  QYKKAAVMPLLDLGQRQHGFTSISVMNEVARILEMPPMRVYEVASFYTMYNRTPVG---- 132

Query: 126 KSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNM------------------------ 159
               ++H+  CTTTPC L    SDAI++ IK+   +                        
Sbjct: 133 ----KFHVQACTTTPCQLGGCGSDAIVKAIKEHLGIKQGETTADGLFTFIEVECLGACVN 188

Query: 160 --MLE-----RQDLEPKDM--------EQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQ 204
             M++      +DL P+ +        E + D  KA K P PGP          SGR   
Sbjct: 189 APMIQINDDYYEDLTPETIKSLLTALKESVTDVGKAAKVPKPGP---------LSGR--D 237

Query: 205 AREAYHDMTSLTGEPHGPWDSKRDF 229
             E    +T+LT EP G   ++ D 
Sbjct: 238 TCENSAGLTNLTSEPWGVEKTRSDL 262


>gi|398396634|ref|XP_003851775.1| hypothetical protein MYCGRDRAFT_73335 [Zymoseptoria tritici IPO323]
 gi|339471655|gb|EGP86751.1| hypothetical protein MYCGRDRAFT_73335 [Zymoseptoria tritici IPO323]
          Length = 295

 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 100/160 (62%), Gaps = 19/160 (11%)

Query: 6   AKLASNVVRQNVRSLSTT---QRLNHD--------ALFVHRDTKDDNLDVKFEFTPDNKK 54
           +K A   +R +VR+L +T   QR            +L VHRDT ++N  + F+F P N+K
Sbjct: 3   SKFAPWALRSSVRALRSTVKPQRRTFQVSSVSRSTSLNVHRDTPENNPSIPFKFNPQNEK 62

Query: 55  RAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTM 114
             E ++S YP  +++AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVATFYTM
Sbjct: 63  LIEEVLSRYPSQYKKAAVMPLLDLGQRQHGFTSISVMNEVARILEMPPMRVYEVATFYTM 122

Query: 115 FIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIK 154
           + R P+G        ++H+  CTTTPC L  SD +++ I+
Sbjct: 123 YNRNPVG--------RFHIQCCTTTPCQLNGSDGVMKAIE 154


>gi|50406285|ref|XP_456621.1| DEHA2A06820p [Debaryomyces hansenii CBS767]
 gi|49652285|emb|CAG84577.1| DEHA2A06820p [Debaryomyces hansenii CBS767]
          Length = 238

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/121 (52%), Positives = 88/121 (72%), Gaps = 8/121 (6%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMH 92
           +HRDTK+DN ++ FEF  +N KRA  II+ YP  +++AAV+PLLDL QRQ G+  I+ M+
Sbjct: 28  IHRDTKEDNKNMSFEFNSENLKRANEIIAKYPPQYKKAAVMPLLDLGQRQTGFTSIAVMN 87

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV 152
           YVA +L++P MRVYEVATFYTM+ RKP+G        +Y++  CTTTPC L  SD +++ 
Sbjct: 88  YVAKYLDMPPMRVYEVATFYTMYNRKPMG--------KYNIQVCTTTPCQLCGSDEVMDA 139

Query: 153 I 153
           I
Sbjct: 140 I 140


>gi|406859884|gb|EKD12946.1| NADH-ubiquinone oxidoreductase subunit [Marssonina brunnea f. sp.
           'multigermtubi' MB_m1]
          Length = 297

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/152 (46%), Positives = 99/152 (65%), Gaps = 13/152 (8%)

Query: 6   AKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPV 65
           A++AS   R ++RS + + R+  DAL VHRDT  +N  + F+FT  N K  + I+  YP 
Sbjct: 17  ARIAS---RSHIRSFTASPRVTSDALQVHRDTPVNNASIPFKFTEQNNKLVDEILKRYPP 73

Query: 66  GHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERI 125
            +++AAV+PLLDL QRQHG+  +S M+ VA  L +P MRVYEVATFYTM+ R P+G    
Sbjct: 74  QYKKAAVMPLLDLGQRQHGFCSLSVMNEVARMLEMPPMRVYEVATFYTMYNRDPVG---- 129

Query: 126 KSILQYHLNWCTTTPCWLR--NSDAILEVIKK 155
               ++H+  CTTTPC L    SDAI++ I +
Sbjct: 130 ----KWHIQACTTTPCQLGGCGSDAIVKTISE 157


>gi|340515265|gb|EGR45520.1| predicted protein [Trichoderma reesei QM6a]
          Length = 262

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 131/263 (49%), Gaps = 55/263 (20%)

Query: 7   KLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVG 66
           + AS   R   R+ S T     D L VHR+T D+N D+ F+F   N+K    I+  YP  
Sbjct: 15  RCASRAARPQARAFSLTASRPSDTLQVHRNTPDNNPDLPFKFNAQNEKLIAEILKRYPPQ 74

Query: 67  HERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIK 126
           +++AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVA+FYTM+ R P+G     
Sbjct: 75  YKKAAVMPLLDLGQRQHGFTSISVMNEVARLLEMPPMRVYEVASFYTMYNRTPVG----- 129

Query: 127 SILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNM------------------------- 159
              ++ +  CTTTPC L    SDAI++ I     +                         
Sbjct: 130 ---KFFVQACTTTPCQLGGCGSDAIVKAISSHLGIKQGETTKDGLFTFIEVECLGACVNA 186

Query: 160 -MLE-----RQDLEPKDMEQIIDDLKAGK-------KPAPGPSGYTSGIGSQSGRFCQAR 206
            M++      +DL P+ + +++DDLKA         KPA  P       G  +GR  ++ 
Sbjct: 187 PMIQINDDYYEDLTPETVVKLLDDLKASAATADKTGKPAKMPVA-----GPLTGR--KSC 239

Query: 207 EAYHDMTSLTGEPHGPWDSKRDF 229
           E    +T+LT EP G   ++ D 
Sbjct: 240 ENSAGLTNLTSEPWGAEKTRSDL 262


>gi|346974862|gb|EGY18314.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Verticillium dahliae
           VdLs.17]
          Length = 265

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/275 (32%), Positives = 134/275 (48%), Gaps = 64/275 (23%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           +    A+    + R  +R++ST+       L VHR+T D+N+++ F+FTP N+     ++
Sbjct: 9   LFRTAARSTCRIARPQIRAISTSTVRPSSTLQVHRNTADNNVEIPFKFTPQNEAVIAELL 68

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
             YP  +++AAV+P+LDL QRQHG+  IS M+ VA  L +P MRVYEVA+FYTM+ R P+
Sbjct: 69  KRYPPQYKKAAVMPVLDLGQRQHGFTSISVMNEVARILEMPPMRVYEVASFYTMYNRTPV 128

Query: 121 GEERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNM------------------- 159
           G        ++ +  CTTTPC L    SDAI++ I++   +                   
Sbjct: 129 G--------KFFIQACTTTPCQLGGCGSDAIVKTIEEHLGIKQGETTADGLFSYLEVECL 180

Query: 160 -------MLE-----RQDLEPKDMEQIIDDLKA-------------GKKPAPGPSGYTSG 194
                  M++      +DL P+   Q+ID L+A              K P PGP      
Sbjct: 181 GACVNAPMVQINDDYYEDLTPETTRQLIDALRASVSIVNGEATVDHAKVPKPGP------ 234

Query: 195 IGSQSGRFCQAREAYHDMTSLTGEPHGPWDSKRDF 229
               SGR  Q  E     T+LT EP G   ++ D 
Sbjct: 235 --INSGR--QTCENSAGPTNLTSEPWGIETTRSDL 265


>gi|448119760|ref|XP_004203810.1| Piso0_000830 [Millerozyma farinosa CBS 7064]
 gi|359384678|emb|CCE78213.1| Piso0_000830 [Millerozyma farinosa CBS 7064]
          Length = 241

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/121 (52%), Positives = 87/121 (71%), Gaps = 8/121 (6%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMH 92
           VHRDTK +N  V FEF  +N+KRA+ +I+ YP  +++AAV+PLLDL QRQ G+  I+ M+
Sbjct: 30  VHRDTKVNNPSVPFEFNSENRKRADEVIAKYPPQYKKAAVMPLLDLGQRQAGFTSIAVMN 89

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV 152
           YVA +L++P MRVYEVATFYTM+ R P+G+ RI+         CTTTPC L  SD ++E 
Sbjct: 90  YVAKYLDMPPMRVYEVATFYTMYNRSPVGKYRIQ--------VCTTTPCQLCGSDGVMEA 141

Query: 153 I 153
           +
Sbjct: 142 V 142


>gi|388582117|gb|EIM22423.1| hypothetical protein WALSEDRAFT_44872 [Wallemia sebi CBS 633.66]
          Length = 246

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/256 (35%), Positives = 134/256 (52%), Gaps = 54/256 (21%)

Query: 2   LSNLAKLASNVVRQ---NVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEA 58
           +S + K   +V R+   ++RS+ST+     DALFVHRDT+ +N  + F+FT +N+     
Sbjct: 1   MSLIGKAVRSVEREATRSLRSISTSVARKSDALFVHRDTEYNNSSIPFKFTAENEPIINQ 60

Query: 59  IISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIR 117
           I++ YP  +++ A++PLLDLAQRQ+ GW  IS M+ VA  + +P MRVYEVATFYTMF R
Sbjct: 61  ILARYPPQYKKGAIMPLLDLAQRQNKGWTSISCMNEVAKMVEVPPMRVYEVATFYTMFNR 120

Query: 118 KPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM------------MLE--- 162
           +P+G+  ++         CTTTPC L  +  I++ I+K   +            +LE   
Sbjct: 121 EPVGDHLVQ--------VCTTTPCMLNGAYEIMDTIEKDLGVEAGHTTSDKKFTLLEVEC 172

Query: 163 ----------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAR 206
                            +DL       I+  LK GK+P  GP         QS R     
Sbjct: 173 LGACSNAPMVQINDHYYEDLTKSTTLDILKQLKQGKQPKIGP---------QSTRHTCEN 223

Query: 207 EAYHDMTSLTGEPHGP 222
            A   +T+LT +P+GP
Sbjct: 224 SA--GLTNLTEKPYGP 237


>gi|346326035|gb|EGX95631.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Cordyceps militaris
           CM01]
          Length = 257

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/272 (34%), Positives = 132/272 (48%), Gaps = 58/272 (21%)

Query: 1   MLSNLAKLASNVVR----------QNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTP 50
           M S LA L  + VR          Q  R+ S +     D L VHR+T D+N D+ F+F+ 
Sbjct: 1   MASKLAPLFRSCVRASSARVAVRPQISRAFSVSATRPSDNLNVHRNTPDNNPDIPFKFSA 60

Query: 51  DNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVAT 110
           +N+K    I+  YP  +++AAV+P+LDL QRQHG+  IS M+ VA  L +P MRVYEVA+
Sbjct: 61  ENEKVIAEILKRYPPQYKKAAVMPILDLGQRQHGFTSISVMNEVARLLEMPPMRVYEVAS 120

Query: 111 FYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNMMLER----- 163
           FYTM+ R P+G        ++ +  CTTTPC L    SD I++ IK+   +   +     
Sbjct: 121 FYTMYNRTPVG--------KFFVQACTTTPCQLGGCGSDVIVKAIKEHLGIQQGQTTPDG 172

Query: 164 --------------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGS 197
                                     +DL P  + +++ DLK G       +G T   G 
Sbjct: 173 LFTFIEVECLGACVNAPMIQINDDYYEDLTPTTVVKLLQDLKQGAA-----TGKTPAAGP 227

Query: 198 QSGRFCQAREAYHDMTSLTGEPHGPWDSKRDF 229
            SGR  Q  E     T+LT EP G   ++ D 
Sbjct: 228 LSGR--QTCENSAGQTNLTTEPWGVETTRADL 257


>gi|367036757|ref|XP_003648759.1| hypothetical protein THITE_2106558 [Thielavia terrestris NRRL 8126]
 gi|346996020|gb|AEO62423.1| hypothetical protein THITE_2106558 [Thielavia terrestris NRRL 8126]
          Length = 263

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/255 (35%), Positives = 127/255 (49%), Gaps = 60/255 (23%)

Query: 16  NVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPL 75
             R+ S + R   D L VHR+T D+N D+ F+FT  N+     I+  YP  +++AAV+PL
Sbjct: 28  QARAFSLSARKQSDTLMVHRNTPDNNPDIPFKFTEQNEAIIAEILKRYPPQYKKAAVMPL 87

Query: 76  LDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNW 135
           LDL QRQHG+  IS M+ VA  L +P MRVYEVA+FYTM+ R P+G        ++H+  
Sbjct: 88  LDLGQRQHGFTSISVMNEVARILEMPPMRVYEVASFYTMYNRTPVG--------KFHVQA 139

Query: 136 CTTTPCWLR--NSDAILEVIKKKCNM--------------------------MLE----- 162
           CTTTPC L    SDAI++ IK+   +                          M++     
Sbjct: 140 CTTTPCQLGGCGSDAIVQAIKEHLGIKQGETTADGLFTFTEVECLGACVNAPMVQINDDY 199

Query: 163 RQDLEPKDMEQIIDDL--------KAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTS 214
            +DL P+ ++ ++  L        KA   P PGP          SGR  +  E    +TS
Sbjct: 200 YEDLTPETIKSLLTALRESAADVSKAAAVPKPGP---------LSGR--KTCENSAGITS 248

Query: 215 LTGEPHGPWDSKRDF 229
           LT EP G   ++ D 
Sbjct: 249 LTSEPWGIEKTRPDL 263


>gi|344230772|gb|EGV62657.1| subunit NUHM of NADH:Ubiquinone oxidoreductase [Candida tenuis ATCC
           10573]
 gi|344230773|gb|EGV62658.1| hypothetical protein CANTEDRAFT_115225 [Candida tenuis ATCC 10573]
          Length = 245

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 71/154 (46%), Positives = 94/154 (61%), Gaps = 9/154 (5%)

Query: 1   MLSNLAK-LASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAI 59
           M  +LAK       R   R  S + +     + VHR+   DN  + FEFT +N KRA+ I
Sbjct: 1   MFRSLAKTFVGPATRPATRPTSLSSKRFSSIISVHRNKDVDNPSLPFEFTSENLKRADEI 60

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           IS YP  +++ A +PLLDL QRQ G+  IS M+YVA  L++P MRVYEVATFYTM+ R+P
Sbjct: 61  ISKYPPQYKKGACMPLLDLGQRQLGFTSISVMNYVAKMLDMPPMRVYEVATFYTMYNRRP 120

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVI 153
           +G        +Y+L  CTTTPC L  SD I+E +
Sbjct: 121 MG--------KYNLQICTTTPCQLCGSDEIMEAV 146


>gi|389635755|ref|XP_003715530.1| hypothetical protein MGG_07301 [Magnaporthe oryzae 70-15]
 gi|351647863|gb|EHA55723.1| hypothetical protein MGG_07301 [Magnaporthe oryzae 70-15]
          Length = 257

 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 87/250 (34%), Positives = 130/250 (52%), Gaps = 50/250 (20%)

Query: 13  VRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           +  + R++S+T     D L VHR+T D+N D+ F+F+  N+K    ++  YP  +++AAV
Sbjct: 25  ISMSSRTISSTASRRSDTLMVHRNTPDNNPDIPFKFSAQNEKVITEVLKRYPPQYKKAAV 84

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +PLLD+ QRQHG+  IS M+ VA  L +P MRVYEVA+FYTM+ R P+G        +Y 
Sbjct: 85  MPLLDIGQRQHGFTSISVMNEVARILEMPPMRVYEVASFYTMYNRTPVG--------KYF 136

Query: 133 LNWCTTTPCWLR--NSDAILEVIKKKCNM--------------------------MLE-- 162
           +  CTTTPC L    SDAI++ IK++  +                          M++  
Sbjct: 137 VQACTTTPCQLGGCGSDAIVKAIKEELGISQGQTTPDGLFTFIEVECLGACVNAPMIQIN 196

Query: 163 ---RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEP 219
               +DL P+  + ++  LK   K  P P+G  SG  S     C   E    +T+LT EP
Sbjct: 197 DDYYEDLTPETTKSLLAGLKDPSKAVP-PAGPLSGRHS-----C---EHSGGLTNLTSEP 247

Query: 220 HGPWDSKRDF 229
            G   ++ D 
Sbjct: 248 WGIETTRSDL 257


>gi|126131460|ref|XP_001382255.1| subunit NUHM of NADH:Ubiquinone Oxidoreductase [Scheffersomyces
           stipitis CBS 6054]
 gi|126094080|gb|ABN64226.1| subunit NUHM of NADH:Ubiquinone Oxidoreductase [Scheffersomyces
           stipitis CBS 6054]
          Length = 239

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 110/204 (53%), Gaps = 39/204 (19%)

Query: 16  NVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPL 75
           N  ++S   +     + VHR++K DN ++ FEF  +N KRA+ II+ YP  +++ AV+PL
Sbjct: 12  NKSAVSAMSKRYSAIISVHRESKLDNQNIAFEFNSENLKRADEIIAKYPPQYKKGAVMPL 71

Query: 76  LDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNW 135
           LDL QRQ G+  IS M+YVA  L++P MRVYEVATFYTM+ RKP+G        +Y++  
Sbjct: 72  LDLGQRQLGFTSISVMNYVAKMLDMPPMRVYEVATFYTMYNRKPMG--------KYNIQV 123

Query: 136 CTTTPCWLRNSDAILEVIKKKCNMMLER-------------------------------Q 164
           CTTTPC L  SD +++ I+    +   +                               +
Sbjct: 124 CTTTPCQLCGSDGVMKAIQDHLKVKPGQTTPDNLFTLQEVECLGACVNAPMIAVNDDFYE 183

Query: 165 DLEPKDMEQIIDDLKAGKKPAPGP 188
           DL P+    I+   +AGK+P  GP
Sbjct: 184 DLTPEATVDILKQFQAGKEPKIGP 207


>gi|260950659|ref|XP_002619626.1| hypothetical protein CLUG_00786 [Clavispora lusitaniae ATCC 42720]
 gi|238847198|gb|EEQ36662.1| hypothetical protein CLUG_00786 [Clavispora lusitaniae ATCC 42720]
          Length = 237

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 64/121 (52%), Positives = 86/121 (71%), Gaps = 8/121 (6%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMH 92
           VHRDTK+DN  + FEFT +N KRA+ II+ YP  +++ A +PLLDL QRQ G+  IS M+
Sbjct: 26  VHRDTKEDNQQMPFEFTAENLKRAKEIIAKYPPQYKKGACMPLLDLGQRQIGFTSISVMN 85

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV 152
           YVA  L++P MRVYEVATFYTM++R P+G        +Y++  CTTTPC L  SD I++ 
Sbjct: 86  YVAKMLDMPPMRVYEVATFYTMYMRHPMG--------KYNIQVCTTTPCQLCGSDEIMKA 137

Query: 153 I 153
           +
Sbjct: 138 V 138


>gi|46137431|ref|XP_390407.1| hypothetical protein FG10231.1 [Gibberella zeae PH-1]
          Length = 260

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/264 (34%), Positives = 136/264 (51%), Gaps = 46/264 (17%)

Query: 1   MLSNLAKLASNVVRQNVRS-LSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAI 59
           ++ ++ + A  V R   R+  S T     D L VHR+T+D+N D+ F+F  +N+K    I
Sbjct: 8   LIRSVIRPACRVARPQSRAAFSLTASRRSDTLMVHRNTEDNNPDIPFKFNAENQKVMAEI 67

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           +  YP  +++AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVA+FYTM+ R P
Sbjct: 68  LKRYPPQYKKAAVMPLLDLGQRQHGFTSISVMNEVARLLEMPPMRVYEVASFYTMYNRTP 127

Query: 120 IGEERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNM------------MLE--- 162
           +G        +Y +  CTTTPC L    SD I++ IK++  +            +LE   
Sbjct: 128 VG--------KYFVQICTTTPCQLGGCGSDVIVKAIKEELGIEQGQTTADGLFTILEVEC 179

Query: 163 ----------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGY-TSGIGSQSGRFCQA 205
                            +DL P  ++ ++  L++ K  A  PS       G  SGR  + 
Sbjct: 180 LGACVNAPMIQINDDYYEDLTPASVKDLLKSLRS-KATATDPSTVNVPKPGPLSGR--KD 236

Query: 206 REAYHDMTSLTGEPHGPWDSKRDF 229
            E    +TSLT EP G   +++D 
Sbjct: 237 CENSAGLTSLTSEPWGTETTRKDL 260


>gi|440465041|gb|ELQ34384.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Magnaporthe oryzae Y34]
 gi|440482029|gb|ELQ62556.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Magnaporthe oryzae P131]
          Length = 253

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 87/250 (34%), Positives = 130/250 (52%), Gaps = 50/250 (20%)

Query: 13  VRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           +  + R++S+T     D L VHR+T D+N D+ F+F+  N+K    ++  YP  +++AAV
Sbjct: 21  ISMSSRTISSTASRRSDTLMVHRNTPDNNPDIPFKFSAQNEKVITEVLKRYPPQYKKAAV 80

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +PLLD+ QRQHG+  IS M+ VA  L +P MRVYEVA+FYTM+ R P+G        +Y 
Sbjct: 81  MPLLDIGQRQHGFTSISVMNEVARILEMPPMRVYEVASFYTMYNRTPVG--------KYF 132

Query: 133 LNWCTTTPCWLR--NSDAILEVIKKKCNM--------------------------MLE-- 162
           +  CTTTPC L    SDAI++ IK++  +                          M++  
Sbjct: 133 VQACTTTPCQLGGCGSDAIVKAIKEELGISQGQTTPDGLFTFIEVECLGACVNAPMIQIN 192

Query: 163 ---RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEP 219
               +DL P+  + ++  LK   K  P P+G  SG  S     C   E    +T+LT EP
Sbjct: 193 DDYYEDLTPETTKSLLAGLKDPSKAVP-PAGPLSGRHS-----C---EHSGGLTNLTSEP 243

Query: 220 HGPWDSKRDF 229
            G   ++ D 
Sbjct: 244 WGIETTRSDL 253


>gi|361129903|gb|EHL01779.1| putative NADH-ubiquinone oxidoreductase 24 kDa subunit,
           mitochondrial [Glarea lozoyensis 74030]
          Length = 291

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 67/139 (48%), Positives = 90/139 (64%), Gaps = 10/139 (7%)

Query: 18  RSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLD 77
           RS + + +   DAL VHRDT ++N  + F+FT  N K  + I+  YP  +++AAV+P+LD
Sbjct: 26  RSFTASTKKGSDALQVHRDTPENNAKIPFKFTAQNNKLIDEILKRYPPQYKKAAVMPILD 85

Query: 78  LAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCT 137
           L QRQHG+  +S M+ VA  L +P MRVYEVATFYTM+ R P+G        +YHL  CT
Sbjct: 86  LGQRQHGFTSLSVMNEVARILEMPPMRVYEVATFYTMYNRTPVG--------KYHLQVCT 137

Query: 138 TTPCWLR--NSDAILEVIK 154
           TTPC L    SD I++ IK
Sbjct: 138 TTPCQLGGCGSDKIVQTIK 156


>gi|400594616|gb|EJP62454.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Beauveria bassiana
           ARSEF 2860]
          Length = 619

 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 92/272 (33%), Positives = 135/272 (49%), Gaps = 58/272 (21%)

Query: 1   MLSNLAKLASNVVRQNVR----------SLSTTQRLNHDALFVHRDTKDDNLDVKFEFTP 50
           M S LA L  + VR + R          + S +     D L VHR+T D+N D+ F+F+ 
Sbjct: 363 MASKLAPLFRSCVRASARMAARPQTTSRAFSVSATRPSDTLNVHRNTPDNNPDIPFKFSA 422

Query: 51  DNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVAT 110
           +N+K    I+  YP  +++AAV+P+LD+ QRQHG+  IS M+ VA  L +P MRVYEVA+
Sbjct: 423 ENEKVIAEILKRYPPQYKKAAVMPILDIGQRQHGFTSISVMNEVARLLEMPPMRVYEVAS 482

Query: 111 FYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNM--------- 159
           FYTM+ R P+G        ++ +  CTTTPC L    SD I++ IK+   +         
Sbjct: 483 FYTMYNRTPVG--------KFFIQACTTTPCQLGGCGSDVIVKAIKEHLGIKQGETSADG 534

Query: 160 -----------------MLE-----RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGS 197
                            M++      +DL P+ + +++ DLKAG       +G     G 
Sbjct: 535 LFTFIEVECLGACVNAPMIQINDDYYEDLTPETVVKLLKDLKAGAA-----TGKLPAAGP 589

Query: 198 QSGRFCQAREAYHDMTSLTGEPHGPWDSKRDF 229
            SGR  Q  E     T+LT EP G   ++ D 
Sbjct: 590 LSGR--QTCENSAGQTNLTSEPWGVETTRADL 619


>gi|440804510|gb|ELR25387.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acanthamoeba
           castellanii str. Neff]
          Length = 270

 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 87/237 (36%), Positives = 119/237 (50%), Gaps = 52/237 (21%)

Query: 21  STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQ 80
           S  ++ +H  L  HRDT D+ +D  F+FT  N    + I++ YPV +++AA IPLL LAQ
Sbjct: 43  SVPRQGDHGGLSQHRDTPDNTIDTPFDFTEANTVEIKKILAKYPVNYKQAATIPLLHLAQ 102

Query: 81  RQ-HGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTT 139
            Q  GW+P++AM+ +A  L +P M+VYEVATFYTMF R  +G        +YH+  CTTT
Sbjct: 103 YQTGGWVPLAAMNKIAKILEIPPMKVYEVATFYTMFNRTKVG--------KYHVQLCTTT 154

Query: 140 PCWLR--NSDAILEVIKKKCNM--------------------------MLE-----RQDL 166
           PC L    S  ILE IKK  N+                          ML+      +DL
Sbjct: 155 PCQLGGCGSTVILETIKKHLNIGVGETTADGLFTLTEVECLGACVNAPMLQIGDDYFEDL 214

Query: 167 EPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPW 223
            P+    +++ LKAGK P  GP           GR  +  E     T+L   P GP+
Sbjct: 215 TPESTVALLETLKAGKTPKVGP--------QTGGR--KNCEGPQGKTTLFAAPAGPY 261


>gi|396499504|ref|XP_003845491.1| hypothetical protein LEMA_P007990.1 [Leptosphaeria maculans JN3]
 gi|312222072|emb|CBY02012.1| hypothetical protein LEMA_P007990.1 [Leptosphaeria maculans JN3]
          Length = 297

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/138 (47%), Positives = 94/138 (68%), Gaps = 8/138 (5%)

Query: 19  SLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDL 78
           S+S T      +L VHRDT ++N ++ F+FT  N++  + I+S YP  +++AAV+PLLDL
Sbjct: 29  SVSRTAWNESGSLNVHRDTPENNPNIPFKFTAQNEQLIDEIVSRYPSQYKKAAVMPLLDL 88

Query: 79  AQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTT 138
            QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R P+G        ++H+  CTT
Sbjct: 89  GQRQHGFCSISVMNEVARLLEMPPMRVYEVATFYTMYNRDPVG--------KFHVQVCTT 140

Query: 139 TPCWLRNSDAILEVIKKK 156
           TPC LR+SDA+++  + +
Sbjct: 141 TPCMLRDSDAVMKACEDE 158


>gi|408397016|gb|EKJ76167.1| hypothetical protein FPSE_03642 [Fusarium pseudograminearum CS3096]
          Length = 260

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/264 (34%), Positives = 137/264 (51%), Gaps = 46/264 (17%)

Query: 1   MLSNLAKLASNVVRQNVRS-LSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAI 59
           ++ ++ + A  V R   R+  S T     D+L VHR+T+D+N D+ F+F  +N+K    I
Sbjct: 8   LIRSVIRPACRVARPQSRAAFSLTASRRSDSLMVHRNTEDNNPDIPFKFNAENQKVMAEI 67

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           +  YP  +++AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVA+FYTM+ R P
Sbjct: 68  LKRYPPQYKKAAVMPLLDLGQRQHGFTSISVMNEVARLLEMPPMRVYEVASFYTMYNRTP 127

Query: 120 IGEERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNM------------MLE--- 162
           +G        +Y +  CTTTPC L    SD I++ IK++  +            +LE   
Sbjct: 128 VG--------KYFVQICTTTPCQLGGCGSDVIVKAIKEELGIEQGQTTADGLFTILEVEC 179

Query: 163 ----------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGY-TSGIGSQSGRFCQA 205
                            +DL P  ++ ++  L++ K  A  PS       G  SGR  + 
Sbjct: 180 LGACVNAPMIQINDDYYEDLTPASVKDLLKSLRS-KATATDPSTVNVPKPGPLSGR--KD 236

Query: 206 REAYHDMTSLTGEPHGPWDSKRDF 229
            E    +T+LT EP G   +++D 
Sbjct: 237 CENSAGLTNLTSEPWGTETTRKDL 260


>gi|374292608|ref|YP_005039643.1| NADH-quinone oxidoreductase, subunit E [Azospirillum lipoferum 4B]
 gi|357424547|emb|CBS87426.1| NADH-quinone oxidoreductase, subunit E [Azospirillum lipoferum 4B]
          Length = 215

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/204 (38%), Positives = 109/204 (53%), Gaps = 51/204 (25%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPK 102
             F FTP+N + A+ II+ YP G + +A +PLLD+AQRQ+G WLP  AM  VAD L +P+
Sbjct: 14  TSFTFTPENLELAKRIIAKYPQGKQASACMPLLDVAQRQNGGWLPRVAMDAVADLLGMPR 73

Query: 103 MRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLE 162
           +RVYEVATFYTM+ + P+G        ++H+  CTTTPCWLR SD I+   KKK  + + 
Sbjct: 74  IRVYEVATFYTMYNKNPVG--------RHHIQVCTTTPCWLRGSDDIVHTCKKKLGIEVG 125

Query: 163 R-------------------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGY 191
                                           +D+ P+ ME+I+D L  G+ P P     
Sbjct: 126 ETTADGQFTLGEVECSGACVNAPVVQIGDDYYEDVAPEHMERILDALARGETPKP----- 180

Query: 192 TSGIGSQSGRFCQAREAYHDMTSL 215
               GSQ+GR  Q+ E     T+L
Sbjct: 181 ----GSQTGR--QSSEPVGGPTTL 198


>gi|288958985|ref|YP_003449326.1| NADH dehydrogenase I subunit E [Azospirillum sp. B510]
 gi|288911293|dbj|BAI72782.1| NADH dehydrogenase I chain E [Azospirillum sp. B510]
          Length = 215

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 103/186 (55%), Gaps = 45/186 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F FTPDN + A+ II+ YP G + +A +PLLD+AQRQ+G WLP  AM  VAD L +P++R
Sbjct: 16  FTFTPDNLELAKRIIAKYPAGKQASACMPLLDVAQRQNGGWLPRVAMDAVADLLGMPRIR 75

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER- 163
           VYEVATFYTM+ + P+G        ++H+  CTTTPCWLR SD ++   K+K  + +   
Sbjct: 76  VYEVATFYTMYNKNPVG--------RHHIQVCTTTPCWLRGSDDVVHACKRKLGIGMGET 127

Query: 164 ------------------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTS 193
                                         +D+ P+ +E+I+D L  G+ P PG     S
Sbjct: 128 TADGQFTLGEVECSGACVNAPVVQIGDDYYEDVAPEHIERILDALARGETPKPG-----S 182

Query: 194 GIGSQS 199
            IG QS
Sbjct: 183 QIGRQS 188


>gi|392382095|ref|YP_005031292.1| NADH-quinone oxidoreductase, subunit E [Azospirillum brasilense
           Sp245]
 gi|356877060|emb|CCC97861.1| NADH-quinone oxidoreductase, subunit E [Azospirillum brasilense
           Sp245]
          Length = 205

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/188 (41%), Positives = 102/188 (54%), Gaps = 45/188 (23%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMHYVADFLNLPK 102
             F F P+N +RA+AII+ YP G + +A +PLLDLAQRQ  GWLP  AM  VAD L +P+
Sbjct: 13  ASFAFNPENLERAKAIIAKYPAGKQASACMPLLDLAQRQSEGWLPRVAMDAVADLLGMPR 72

Query: 103 MRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLE 162
           +RVYEVATFYTM+ + P+G    K ++Q     CTTTPCWLR SD I+   ++K  + + 
Sbjct: 73  IRVYEVATFYTMYNKTPVG----KHVIQV----CTTTPCWLRGSDDIVHTCERKLGIGVG 124

Query: 163 R-------------------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGY 191
                                           +D+ P+ ME IID LK G+ P  G    
Sbjct: 125 ETTADGQFTLREVECSGACVNAPVVQIGDDYYEDVSPEHMETIIDALKGGEIPKHG---- 180

Query: 192 TSGIGSQS 199
            S IG QS
Sbjct: 181 -SQIGRQS 187


>gi|330916684|ref|XP_003297520.1| hypothetical protein PTT_07946 [Pyrenophora teres f. teres 0-1]
 gi|311329757|gb|EFQ94380.1| hypothetical protein PTT_07946 [Pyrenophora teres f. teres 0-1]
          Length = 297

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 61/125 (48%), Positives = 88/125 (70%), Gaps = 8/125 (6%)

Query: 30  ALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPIS 89
           +L VHRDT  +NL + F+FTP N++  + ++S YP  +++AAV+PLLDL QRQHG+  IS
Sbjct: 40  SLNVHRDTPQNNLKIPFKFTPQNEELIKEVVSRYPSQYKKAAVMPLLDLGQRQHGFCSIS 99

Query: 90  AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
            M+ VA  L +P MRVYEVATFYTM+ R P+G        ++H+  CTTTPC L +SD++
Sbjct: 100 VMNEVARILEMPPMRVYEVATFYTMYNRDPVG--------KFHVQVCTTTPCMLCDSDSV 151

Query: 150 LEVIK 154
           ++  +
Sbjct: 152 MKACE 156


>gi|302421686|ref|XP_003008673.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Verticillium
           albo-atrum VaMs.102]
 gi|261351819|gb|EEY14247.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Verticillium
           albo-atrum VaMs.102]
          Length = 252

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 119/234 (50%), Gaps = 54/234 (23%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           +    A+    + R  +R++ST+       L VHR+T D+N+++ F+FTP N+     ++
Sbjct: 9   LFRTAARSTCRIARPQIRAISTSTVRPSSTLQVHRNTADNNVEIPFKFTPQNEAVIAELL 68

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
             YP  +++AAV+P+LDL QRQHG+  IS M+ VA  L +P MRVYEVA+FYTM+ R P+
Sbjct: 69  KRYPPQYKKAAVMPVLDLGQRQHGFTSISVMNEVARILEMPPMRVYEVASFYTMYNRTPV 128

Query: 121 GEERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNM------------------- 159
           G        ++ +  CTTTPC L    SDAI++ I++   +                   
Sbjct: 129 G--------KFFIQACTTTPCQLGGCGSDAIVKTIEEHLGIKQGETTADGLFSYLEVECL 180

Query: 160 -------MLE-----RQDLEPKDMEQIIDDLKA-------------GKKPAPGP 188
                  M++      +DL P+   Q+ID L+A              K P PGP
Sbjct: 181 GACVNAPMVQINDDYYEDLTPETTRQLIDALRASVSIVNGEATVDHAKVPKPGP 234


>gi|378731422|gb|EHY57881.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Exophiala
           dermatitidis NIH/UT8656]
          Length = 274

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/252 (34%), Positives = 122/252 (48%), Gaps = 57/252 (22%)

Query: 11  NVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERA 70
           +V R   R  S+T     + L VHR+T D+N  + F+F   N +  + I+  YP  +++A
Sbjct: 26  HVFRPTSRQFSSTPSSRSETLSVHRNTPDNNPSIPFKFNETNLRLIDEILKRYPPQYKKA 85

Query: 71  AVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQ 130
           AV+PLLDL QRQHGW  IS M+ VA  L +P MRVYEVATFYTM+ R+P+G        +
Sbjct: 86  AVMPLLDLGQRQHGWCTISVMNEVARILEMPPMRVYEVATFYTMYNRQPVG--------K 137

Query: 131 YHLNWCTTTPCWLR--NSDAIL------------EVIKKKCNMMLE-------------- 162
           Y +  CTTTPC L    SD I+            ++ + K   +LE              
Sbjct: 138 YFVQVCTTTPCMLGGCGSDKIMKACEDFLGIHSGQMTEDKLFSLLEVECLGACANAPMIQ 197

Query: 163 -----RQDLEPKDMEQIIDDLK---------AGKKPAPGPSGYTSGIGSQSGRFCQAREA 208
                 +DL P  +  ++  LK           K P PGP  Y        G+   + E 
Sbjct: 198 INDDYYEDLTPDTVTNLLQALKDSATISGYDVNKIPRPGPQPY-------EGKQRMSCEP 250

Query: 209 YHDMTSLTGEPH 220
              +TSLTGEP+
Sbjct: 251 RGGLTSLTGEPY 262


>gi|212528898|ref|XP_002144606.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Talaromyces
           marneffei ATCC 18224]
 gi|210074004|gb|EEA28091.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Talaromyces
           marneffei ATCC 18224]
          Length = 260

 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 116/221 (52%), Gaps = 47/221 (21%)

Query: 7   KLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVG 66
           ++   + R   RS S       D+LFVHR+  D+N  + F+F+ +N+K  + I+  YP  
Sbjct: 15  QIIPQISRPQWRSFSAVAPKLSDSLFVHRNKPDNNPSIPFKFSAENEKVIDEILKRYPPQ 74

Query: 67  HERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIK 126
           +++AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R+P+G     
Sbjct: 75  YKKAAVMPLLDLGQRQHGFTSISVMNEVARLLEMPPMRVYEVATFYTMYNREPVG----- 129

Query: 127 SILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNM------------------------- 159
              +Y +  CTTTPC L    SD I++ I K   +                         
Sbjct: 130 ---KYFVQVCTTTPCQLGGCGSDKIVQAINKHLGITPGHTTEDGLFTYIEVECLGACVNA 186

Query: 160 -MLE-----RQDLEPKDMEQIIDDLK------AGKKPAPGP 188
            M++      +DL P+ + Q++  LK      A K PAPGP
Sbjct: 187 PMVQINDDYYEDLTPESITQLLTALKESATNPAVKVPAPGP 227


>gi|322699647|gb|EFY91407.1| NADH-ubiquinone oxidoreductase 24 kDa subunit precursor
           [Metarhizium acridum CQMa 102]
          Length = 259

 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 95/157 (60%), Gaps = 10/157 (6%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           +  +  + AS V R   R+ S T     D L +HR+T D+N D+ F+F  +N+     I+
Sbjct: 9   LFRSCVRAASRVARPQTRAFSVTACRPSDTLMIHRNTADNNPDIPFKFNKENETVIAEIL 68

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
             YP  +++AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVA+FYTM+ R P+
Sbjct: 69  KRYPEQYKKAAVMPLLDLGQRQHGFTSISVMNEVARLLEMPPMRVYEVASFYTMYNRNPV 128

Query: 121 GEERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKK 155
           G        ++ +  CTTTPC L    SD I++ IK+
Sbjct: 129 G--------KFFVQACTTTPCQLGGCGSDVIVKAIKE 157


>gi|453084527|gb|EMF12571.1| Complex1_24kDa-domain-containing protein [Mycosphaerella populorum
           SO2202]
          Length = 298

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/152 (43%), Positives = 97/152 (63%), Gaps = 10/152 (6%)

Query: 10  SNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHER 69
           S V  Q  R+  TT+     +L VHR+T ++N D+ F+F   N++  + ++S YP  +++
Sbjct: 19  SAVREQQKRTFQTTRIAQSASLNVHRNTPENNPDIPFKFNKVNEELIKEVLSRYPSQYKK 78

Query: 70  AAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSIL 129
           AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R P+G        
Sbjct: 79  AAVMPLLDLGQRQHGFTSISVMNEVARLLEMPPMRVYEVATFYTMYNRNPVG-------- 130

Query: 130 QYHLNWCTTTPCWL--RNSDAILEVIKKKCNM 159
           ++H+  CTTTPC L    SD I++ I+++  +
Sbjct: 131 KFHIQCCTTTPCQLGGAGSDVIMKAIEEELGI 162


>gi|380494118|emb|CCF33389.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Colletotrichum
           higginsianum]
          Length = 263

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/270 (34%), Positives = 127/270 (47%), Gaps = 61/270 (22%)

Query: 3   SNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISI 62
           S L        R   R+ S T     D L VHRD+  +N D+ F+FT +N+   + I+  
Sbjct: 12  SALRSATCRAARPQFRAFSLTAVRPSDTLQVHRDSPKNNADIPFKFTKENEAVIDEILKR 71

Query: 63  YPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGE 122
           YP  +++AAV+P+LDL QRQHG+  IS M+ VA  L +P  RVYEVA+FYTM+ R P+G 
Sbjct: 72  YPPQYKKAAVMPILDLGQRQHGFTSISVMNEVARLLEMPPQRVYEVASFYTMYNRTPVG- 130

Query: 123 ERIKSILQYHLNWCTTTPCWLR--NSDAILEVI------------KKKCNMMLE------ 162
                  +Y +  CTTTPC L    SD I++ I            K     +LE      
Sbjct: 131 -------KYFIQACTTTPCQLGGVGSDVIVKAIIDHLGIKQGETTKDGLFTLLEVECLGA 183

Query: 163 -------------RQDLEPKDMEQIIDDLK----------AGKKPAPGPSGYTSGIGSQS 199
                         +DL P+   Q++D LK          A + P PGP          S
Sbjct: 184 CVNAPMVQINDDYYEDLTPETTVQLLDALKATATATGGAAAAQVPKPGP--------INS 235

Query: 200 GRFCQAREAYHDMTSLTGEPHGPWDSKRDF 229
           GR  Q  E    +T+LT EP GP  ++ D 
Sbjct: 236 GR--QTCENSKGLTNLTSEPWGPEVTRSDL 263


>gi|154304513|ref|XP_001552661.1| hypothetical protein BC1G_09132 [Botryotinia fuckeliana B05.10]
          Length = 271

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/133 (48%), Positives = 87/133 (65%), Gaps = 11/133 (8%)

Query: 24  QRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH 83
           QR  H     HRDT D+N  + F+FTP N+K  E I+  YP  +++AAV+P+LDL QRQH
Sbjct: 12  QRFPH-GFLQHRDTPDNNASIPFKFTPQNEKIIEEILKKYPPQYKKAAVMPILDLGQRQH 70

Query: 84  GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL 143
           G+  +S M+ VA  L +P MRVYEVATFYTM+ R P+G        ++H+  CTTTPC L
Sbjct: 71  GFTSLSVMNEVARLLEMPPMRVYEVATFYTMYNRTPVG--------KFHVQACTTTPCQL 122

Query: 144 R--NSDAILEVIK 154
               SDAI++ I+
Sbjct: 123 GGCGSDAIVKAIE 135


>gi|224085575|ref|XP_002307624.1| predicted protein [Populus trichocarpa]
 gi|222857073|gb|EEE94620.1| predicted protein [Populus trichocarpa]
          Length = 254

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 129/261 (49%), Gaps = 62/261 (23%)

Query: 13  VRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           +RQ++R      R    AL  H DT D+N D+ +EF+  NK++ + I+S YP  ++++AV
Sbjct: 13  IRQSLRLTPQASRSLSTALNYHIDTADNNPDLPWEFSASNKEKVKEIVSHYPSNYKQSAV 72

Query: 73  IPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQY 131
           IPLLDLAQ+QH GWLP+SAM+ VA  + +  +RVYEVATFY+MF R P+G        +Y
Sbjct: 73  IPLLDLAQQQHGGWLPVSAMNAVAKVIEVAPIRVYEVATFYSMFNRSPVG--------KY 124

Query: 132 HLNWCTTTPCWLRNS----DAILEVIKKKCNMMLE------------------------- 162
           HL  C TTPC +R S    DA+L+ +  K N + +                         
Sbjct: 125 HLLVCGTTPCMIRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVAD 184

Query: 163 ------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTS-GIGSQSGRFCQAREAY 209
                        +D+ PK + +I++ L+ G+KP  G         G + G         
Sbjct: 185 YSNGSEGYTYNYYEDVTPKRVVEIVEMLRKGEKPPHGTQNPKRIKCGPEGGN-------- 236

Query: 210 HDMTSLTGEPHGPWDSKRDFC 230
              T+L GEP  P     D C
Sbjct: 237 ---TTLHGEPKPPPCRDLDSC 254


>gi|345564586|gb|EGX47547.1| hypothetical protein AOL_s00083g356 [Arthrobotrys oligospora ATCC
           24927]
          Length = 280

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/121 (49%), Positives = 86/121 (71%), Gaps = 8/121 (6%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMH 92
           VHRDT D++ ++ F+F+P+N+K    I+  YP  +++AAV+P+LDL QRQHG+  +S M+
Sbjct: 49  VHRDTADNHANIPFKFSPENEKLIAEILKRYPPQYKKAAVMPVLDLGQRQHGFSSLSVMN 108

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV 152
            VA  L +P MRVYEVA+FYTM+ R P+G        ++HL  CTTTPC L NSD+I++ 
Sbjct: 109 EVARILEMPPMRVYEVASFYTMYNRNPVG--------KFHLQVCTTTPCQLCNSDSIMKA 160

Query: 153 I 153
           I
Sbjct: 161 I 161


>gi|451853219|gb|EMD66513.1| hypothetical protein COCSADRAFT_24610 [Cochliobolus sativus ND90Pr]
          Length = 262

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/269 (34%), Positives = 131/269 (48%), Gaps = 51/269 (18%)

Query: 1   MLSNLAKLASNVV--------RQNVRSLSTTQRL--NHDALFVHRDTKDDNLDVKFEFTP 50
           M S L   A  +V        R   R+ S ++       +L VHRDT ++N  + F+FT 
Sbjct: 1   MASRLVPFACRIVPRASRPFQRAQWRAFSVSRPAWNESGSLNVHRDTPENNPKIPFKFTA 60

Query: 51  DNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVAT 110
            N++  + I+S YP  +++AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVAT
Sbjct: 61  QNEELIKEIVSRYPSQYKKAAVMPLLDLGQRQHGFCSISVMNEVARILEMPPMRVYEVAT 120

Query: 111 FYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM---------ML 161
           FYTM+ R P+G        +YH+  CTTTPC L +SDA+++  +    +         + 
Sbjct: 121 FYTMYNRDPVG--------KYHVQVCTTTPCMLCDSDAVMKACEDTLGVHHGETTPDGLF 172

Query: 162 ERQDLE------PKDMEQIIDD----------------LKAGKKPAPGPSGYTSGIGSQS 199
              ++E         M QI DD                LK   +     SG     G  S
Sbjct: 173 TFTEVECLGACANAPMVQINDDYYEDLTYDSTVKLLKALKHSAQATGAQSGELPSPGPLS 232

Query: 200 GRFCQAREAYHDMTSLTGEPHGPWDSKRD 228
           GR  Q+ E    +T LT EP G    ++D
Sbjct: 233 GR--QSCEPAGGLTCLTSEPWGNETLRKD 259


>gi|407775148|ref|ZP_11122444.1| NADH-quinone oxidoreductase, subunit E [Thalassospira profundimaris
           WP0211]
 gi|407282096|gb|EKF07656.1| NADH-quinone oxidoreductase, subunit E [Thalassospira profundimaris
           WP0211]
          Length = 220

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 109/211 (51%), Gaps = 46/211 (21%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ--HGWLPISAMHYVADFLNLPKM 103
           F FTP+N+++A+ II+ YP G +++AV+PLLDLAQRQ    W+P  AM Y+AD L +P +
Sbjct: 17  FAFTPENQEKAKKIIAKYPEGRQQSAVMPLLDLAQRQTEGNWVPTVAMDYIADMLEMPAI 76

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM---- 159
           RVYEVATFYTM+   P+G+  I+         CTTTPCWLR S  +++  KK+  +    
Sbjct: 77  RVYEVATFYTMYNLAPVGKNFIQV--------CTTTPCWLRGSADVVDTCKKELGIGVGE 128

Query: 160 --------MLE-------------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYT 192
                   M+E                    +DL P+  + I+D LK G+KP  GP    
Sbjct: 129 TTEDGQFTMIEVECLGACVNAPMMQINDDYYEDLTPETTKAILDVLKKGEKPKAGPQSGR 188

Query: 193 SGIGSQSG-----RFCQAREAYHDMTSLTGE 218
            G     G      FC    A  D  +  G+
Sbjct: 189 KGCEPIDGPKVLKAFCGCGAAPQDADASEGD 219


>gi|310793679|gb|EFQ29140.1| respiratory-chain NADH dehydrogenase 24 kDa subunit [Glomerella
           graminicola M1.001]
          Length = 263

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/270 (34%), Positives = 127/270 (47%), Gaps = 61/270 (22%)

Query: 3   SNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISI 62
           S L        R   R+ S T     D L VHRD+  +N D+ F+F+ +N+   + I+  
Sbjct: 12  SALRSATCRAARPQFRAFSLTAVRPSDTLQVHRDSPKNNADIPFKFSKENEAVIDEILKR 71

Query: 63  YPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGE 122
           YP  +++AAV+P+LDL QRQHG+  IS M+ VA  L +P  RVYEVA+FYTM+ R P+G 
Sbjct: 72  YPPQYKKAAVMPILDLGQRQHGFTSISVMNEVARLLEMPPQRVYEVASFYTMYNRTPVG- 130

Query: 123 ERIKSILQYHLNWCTTTPCWLR--NSDAILEVI------------KKKCNMMLE------ 162
                  +Y +  CTTTPC L    SD I++ I            K     +LE      
Sbjct: 131 -------KYFIQACTTTPCQLGGVGSDVIVKAIIDHLGIKQGETTKDGLFTLLEVECLGA 183

Query: 163 -------------RQDLEPKDMEQIIDDLK----------AGKKPAPGPSGYTSGIGSQS 199
                         +DL P+   Q++D LK          A + P PGP          S
Sbjct: 184 CVNAPMVQINDDYYEDLTPETTVQLLDALKATATATGGAAAAQVPKPGP--------INS 235

Query: 200 GRFCQAREAYHDMTSLTGEPHGPWDSKRDF 229
           GR  Q  E    +T+LT EP GP  ++ D 
Sbjct: 236 GR--QTCENSKGLTNLTSEPWGPEVTRSDL 263


>gi|428181320|gb|EKX50184.1| hypothetical protein GUITHDRAFT_151242 [Guillardia theta CCMP2712]
          Length = 269

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/271 (32%), Positives = 130/271 (47%), Gaps = 68/271 (25%)

Query: 2   LSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIIS 61
           + N+    +    Q+ R     + L+ D + VHRDT+ +NLD  ++FTP++ K+ + I+ 
Sbjct: 10  IQNIVAKHARFGAQSFRMFHAGRPLSADHVNVHRDTEYNNLDTMWDFTPESYKQIDEILK 69

Query: 62  IYPVGHERAAVIPLLDLAQRQ---------HGWLPISAMHYVADFLNLPKMRVYEVATFY 112
            YP  ++R+AV+PLL LAQ+Q          GW+P+ AM+ +A  L++P MRVYEVATFY
Sbjct: 70  KYPRNYKRSAVMPLLHLAQKQTEHMPEHGSTGWIPLVAMNKIAKILDMPPMRVYEVATFY 129

Query: 113 TMFIRKPIGEERIKSILQYHLNWCTTTPCWLR----NSDAILEVIKKK------------ 156
           TM+ R PIG+  I+         CTTTPC +      +  IL+ IKK             
Sbjct: 130 TMYNRTPIGKHNIQV--------CTTTPCMVGTYGIGAYTILDAIKKHLGIEVGETTKDG 181

Query: 157 -------------CNMMLER-----------QDLEPKDMEQIIDDLKAGKKPAPGPSGYT 192
                        CN  + +           +DL P+    II+ L+ G+ P PGP    
Sbjct: 182 LFHLMEAECLGACCNAPMMQIAGPICNDAYYEDLTPESAIAIIEKLRKGETPPPGPQNGR 241

Query: 193 SGIGSQSGRFCQAREAYHDMTSLTGEPHGPW 223
            G     G+           T L GEP+ P+
Sbjct: 242 KGSIGPLGK-----------TVLLGEPNAPY 261


>gi|448117331|ref|XP_004203229.1| Piso0_000830 [Millerozyma farinosa CBS 7064]
 gi|359384097|emb|CCE78801.1| Piso0_000830 [Millerozyma farinosa CBS 7064]
          Length = 241

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/153 (45%), Positives = 96/153 (62%), Gaps = 11/153 (7%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           M  NL K   N+  Q  R      + +   + VHRDTK +N  + FEF  +N+KRA+ +I
Sbjct: 1   MFRNLQK---NLQGQLSRKSWQISKRHSSIVSVHRDTKLNNPSLPFEFNSENRKRADEVI 57

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           + YP  +++AAV+ LLDL QRQ G+  I+ M+YVA +L++P MRVYEVATFYTM+ R  +
Sbjct: 58  AKYPPQYKKAAVMALLDLGQRQAGFTSIAVMNYVAKYLDMPPMRVYEVATFYTMYNRSNV 117

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVI 153
           G+ RI+         CTTTPC L  SD I+E +
Sbjct: 118 GKYRIQ--------ICTTTPCQLCGSDGIMEAV 142


>gi|452004636|gb|EMD97092.1| hypothetical protein COCHEDRAFT_1163546 [Cochliobolus
           heterostrophus C5]
          Length = 262

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 85/230 (36%), Positives = 119/230 (51%), Gaps = 41/230 (17%)

Query: 30  ALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPIS 89
           +L VHRDT ++N  + F+FT  N++  + I+S YP  +++AAV+PLLDL QRQHG+  IS
Sbjct: 40  SLNVHRDTPENNPKIPFKFTAQNEELIKEIVSRYPSQYKKAAVMPLLDLGQRQHGFCSIS 99

Query: 90  AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
            M+ VA  L +P MRVYEVATFYTM+ R P+G        +YH+  CTTTPC L +SDA+
Sbjct: 100 VMNEVARILEMPPMRVYEVATFYTMYNRDPVG--------KYHVQVCTTTPCMLCDSDAV 151

Query: 150 LEVIKKKCNM---------MLERQDLE------PKDMEQIIDD----------------L 178
           ++  +    +         +    ++E         M QI DD                L
Sbjct: 152 MKACEDTLGVHHGETTPDGLFTFTEVECLGACANAPMVQINDDYYEDLTYDSTVKLLKAL 211

Query: 179 KAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPWDSKRD 228
           K   +     SG     G  SGR  Q+ E    +T LT EP G    ++D
Sbjct: 212 KHSAQATGAQSGELPTPGPLSGR--QSCEPAGGLTCLTSEPWGNETLRKD 259


>gi|224062258|ref|XP_002300805.1| predicted protein [Populus trichocarpa]
 gi|222842531|gb|EEE80078.1| predicted protein [Populus trichocarpa]
          Length = 254

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/273 (33%), Positives = 133/273 (48%), Gaps = 62/273 (22%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML+ L       +RQ +R      R    AL  H +T ++N D+ +EFT  NK++ + II
Sbjct: 1   MLARLGARRLLEIRQALRLTPQASRSFSTALNYHLNTPENNPDLPWEFTAANKEKVKEII 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           S YP  ++++AVIPLLDLAQ+QH GWLP+SAM+ VA  + +  +RVYEVATFY+MF R P
Sbjct: 61  SHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNAVAKVIEVAPIRVYEVATFYSMFNRSP 120

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNS----DAILEVIKKKCNMMLE------------- 162
           +G        +YHL  C TTPC +R S    DA+++ +  K N + +             
Sbjct: 121 VG--------KYHLLVCGTTPCMIRGSREIEDALVKHLGVKRNEVTKDGLFSVGEMECMG 172

Query: 163 ------------------------RQDLEPKDMEQIIDDLKAGKKPAPGPSG-YTSGIGS 197
                                    +D+ PK + +I++ L+ G+KP  G      +  G 
Sbjct: 173 CCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLRKGEKPPHGTQNPQRTKCGP 232

Query: 198 QSGRFCQAREAYHDMTSLTGEPHGPWDSKRDFC 230
           + G            T+L GEP  P     D C
Sbjct: 233 EGGN-----------TTLHGEPKPPPCRDLDAC 254


>gi|351726104|ref|NP_001237627.1| uncharacterized protein LOC100306106 [Glycine max]
 gi|255627569|gb|ACU14129.1| unknown [Glycine max]
          Length = 251

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/172 (43%), Positives = 104/172 (60%), Gaps = 14/172 (8%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML+ LA    N +RQ  R  S   R    AL  H DT D+N  + +EFT  N+ + + I+
Sbjct: 1   MLARLAASRFNEIRQIFRQPS---RAFSTALNYHLDTPDNNPKLPWEFTEANQAKVKEIL 57

Query: 61  SIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           S YP  ++++A IPLLDLAQ+QH GWLP+SAM  VA  + +P +RVYEVATFY+MF R  
Sbjct: 58  SHYPSNYKQSATIPLLDLAQQQHGGWLPVSAMDAVAKIVEVPPIRVYEVATFYSMFNRAK 117

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLERQDLEPKDM 171
           +G        +YHL  C TTPC +R S  I E + K  ++ ++R ++ P  +
Sbjct: 118 VG--------KYHLLVCGTTPCMIRGSRGIEEALLK--HLGVKRNEVTPDGL 159


>gi|359806039|ref|NP_001240921.1| uncharacterized protein LOC100786050 [Glycine max]
 gi|255644244|gb|ACU22686.1| unknown [Glycine max]
          Length = 251

 Score =  129 bits (325), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/172 (43%), Positives = 104/172 (60%), Gaps = 14/172 (8%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML+ LA    N +RQ  R  S   R    AL  H DT D+N  + +EFT  N+ + + I+
Sbjct: 1   MLARLAASRFNEIRQIFRQPS---RAFSTALNYHLDTPDNNPKLPWEFTEANQAKVKEIL 57

Query: 61  SIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           S YP  ++++A IPLLDLAQ+QH GWLP+SAM  VA  + +P +RVYEVATFY+MF R  
Sbjct: 58  SHYPSNYKQSATIPLLDLAQQQHGGWLPVSAMDAVAKIVEVPPIRVYEVATFYSMFNRAK 117

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLERQDLEPKDM 171
           +G        +YHL  C TTPC +R S  I E + K  ++ ++R ++ P  +
Sbjct: 118 VG--------KYHLLVCGTTPCMIRGSRGIEEALLK--HLGVKRNEVTPDGL 159


>gi|389877831|ref|YP_006371396.1| NADH dehydrogenase I subunit E [Tistrella mobilis KA081020-065]
 gi|388528615|gb|AFK53812.1| NADH dehydrogenase I chain E [Tistrella mobilis KA081020-065]
          Length = 208

 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 73/183 (39%), Positives = 100/183 (54%), Gaps = 41/183 (22%)

Query: 39  DDNLD-VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVAD 96
           D N++   F FT +N  +A  II+ YP G +++AV+PLLDLAQRQ  GWLP  AM Y+AD
Sbjct: 3   DTNVEPASFAFTEENLAQAAKIIAKYPEGRQQSAVMPLLDLAQRQGDGWLPRVAMDYIAD 62

Query: 97  FLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
            L +P +RVYEVATFYTM+  KPIG        ++H+  CTTTPCWLR SD +L   KK 
Sbjct: 63  LLGMPPIRVYEVATFYTMYNLKPIG--------RHHVQVCTTTPCWLRGSDEVLGACKKH 114

Query: 157 CNMMLER-------------------------------QDLEPKDMEQIIDDLKAGKKPA 185
             + +                                 +DL+ +   ++++ LK G+ P 
Sbjct: 115 LGIEVGETTEDGLFTLAEVECLGACANAPMMQIGDDYYEDLDAELTVRVLEALKRGETPK 174

Query: 186 PGP 188
           PGP
Sbjct: 175 PGP 177


>gi|342882111|gb|EGU82865.1| hypothetical protein FOXB_06668 [Fusarium oxysporum Fo5176]
          Length = 260

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 97/166 (58%), Gaps = 18/166 (10%)

Query: 1   MLSNLAKLASNVVR--------QNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDN 52
           M S L  L  + +R        Q+  + S T     D L VHR+T+D+N D+ F+F   N
Sbjct: 1   MASKLTPLIRSAIRPVCRAARPQSRAAFSLTASRRSDTLMVHRNTEDNNPDIPFKFNEKN 60

Query: 53  KKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFY 112
           +     I+  YP  +++AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVA+FY
Sbjct: 61  QTVIAEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISVMNEVARLLEMPPMRVYEVASFY 120

Query: 113 TMFIRKPIGEERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKK 156
           TM+ R P+G        +Y +  CTTTPC L    SD I++ IK++
Sbjct: 121 TMYNRTPVG--------KYFVQICTTTPCQLGGCGSDVIVKAIKEE 158


>gi|164663369|ref|XP_001732806.1| hypothetical protein MGL_0581 [Malassezia globosa CBS 7966]
 gi|159106709|gb|EDP45592.1| hypothetical protein MGL_0581 [Malassezia globosa CBS 7966]
          Length = 271

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 102/162 (62%), Gaps = 13/162 (8%)

Query: 18  RSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLD 77
           R+L ++  +  D LFVHRDT  +N  + F F  + ++ A+ IIS YP  +++AAVIPLL 
Sbjct: 27  RTLVSSCAVRSDVLFVHRDTPYNNASIPFSFVGEYEQEAKDIISKYPPQYKKAAVIPLLH 86

Query: 78  LAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWC 136
           LAQ+Q+  W+ ISAM++VAD L +P MRVYEVATFYTMF R P+G        ++ +  C
Sbjct: 87  LAQKQNDNWVSISAMNHVADVLEMPPMRVYEVATFYTMFNRSPVG--------KFFVQVC 138

Query: 137 TTTPCWLR--NSDAILEVIKKKCNMMLERQDLEPKDMEQIID 176
           TTTPC L    S A+LE I+   ++ ++     P  M  +I+
Sbjct: 139 TTTPCMLGGCGSTAVLEAIEN--HLGIKAGHTTPDKMFTVIE 178


>gi|357624995|gb|EHJ75562.1| putative NADH dehydrogenase [Danaus plexippus]
          Length = 244

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/133 (48%), Positives = 89/133 (66%), Gaps = 8/133 (6%)

Query: 18  RSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLD 77
           R++ T+ RL  + LF HRD+K++N +  F+F+  N +R  AII  YP G +R+A+   +D
Sbjct: 15  RNICTSGRLWSEELFAHRDSKENNPNTPFDFSQANLRRLTAIIQNYPEGAQRSALGAAMD 74

Query: 78  LAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCT 137
           + QRQ GW+PISAMH VAD L++P+MRVYE ATFYTM  R+  G        ++++  C 
Sbjct: 75  IVQRQIGWIPISAMHKVADILSIPRMRVYEWATFYTMNKRRFRG--------KFNVKVCI 126

Query: 138 TTPCWLRNSDAIL 150
           TTPC LR SD IL
Sbjct: 127 TTPCMLRGSDIIL 139


>gi|255559917|ref|XP_002520977.1| NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus
           communis]
 gi|223539814|gb|EEF41394.1| NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus
           communis]
          Length = 255

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 137/272 (50%), Gaps = 64/272 (23%)

Query: 5   LAKLASNVVRQ--NVRSLSTTQ--RLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           LA+LA+  +R+   V   S+ Q  R    AL  H D+ D+N ++ +EF+  NK++ + II
Sbjct: 2   LARLAATRLREIRQVFGQSSQQISRSFSTALNYHIDSPDNNPNIPWEFSEKNKEKVKEII 61

Query: 61  SIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           S YP  ++++AVIPLLDLAQ+QH GWLP+SAM  VA  + +  +RVYEVATFY+MF R P
Sbjct: 62  SHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMDAVAKVIEVAPIRVYEVATFYSMFNRSP 121

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNS----DAILEVIKKKCNMMLE------------- 162
           +G        +YHL  C TTPC +R S    DA+L+ +  K N + +             
Sbjct: 122 VG--------KYHLLVCGTTPCMIRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMG 173

Query: 163 ------------------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQ 198
                                    +D+ PK + +I+D L+ G+KP   P G  +    +
Sbjct: 174 CCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVDMLRRGEKP---PHGTQNPKRIK 230

Query: 199 SGRFCQAREAYHDMTSLTGEPHGPWDSKRDFC 230
           SG            T+L GEP  P     D C
Sbjct: 231 SG-------PEGGNTTLNGEPKPPPCRDLDAC 255


>gi|384247009|gb|EIE20497.1| hypothetical protein COCSUDRAFT_18421 [Coccomyxa subellipsoidea
           C-169]
          Length = 293

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 109/212 (51%), Gaps = 53/212 (25%)

Query: 18  RSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLD 77
           RS +T    +HD L  HR +  +N +  F+FTP+N +R   +++ +P  ++++A IPLLD
Sbjct: 16  RSFATN---SHDILNTHRHSPKNNWETPFDFTPENYERVAEVLAKFPTNYKQSACIPLLD 72

Query: 78  LAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWC 136
           LAQ+Q+ GWL ++AM+ VA+ + +P +RVYEVATFYTMF R PIG        +YH+  C
Sbjct: 73  LAQQQNDGWLSLNAMNRVAEIIEVPPIRVYEVATFYTMFNRSPIG--------KYHIMVC 124

Query: 137 TTTPCWLRNSDAILEVIKKKCNMMLER--------------------------------- 163
            TTPC L  S +I   IK    +   +                                 
Sbjct: 125 GTTPCMLCGSRSISSAIKDHLKIDYGQTTSDGLFTLGEMECMGSCVNAPMIAVADYTGGA 184

Query: 164 --------QDLEPKDMEQIIDDLKAGKKPAPG 187
                   +DL P D  +I++DLK GKKP  G
Sbjct: 185 QSFSYNYYEDLTPADAVKILEDLKGGKKPKVG 216


>gi|449468942|ref|XP_004152180.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Cucumis sativus]
          Length = 251

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/173 (42%), Positives = 106/173 (61%), Gaps = 13/173 (7%)

Query: 5   LAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYP 64
           LA+LA+N +    +S+  T R    A   H D+ D+N D+ +EF+  NKK+   I+S YP
Sbjct: 2   LARLAANRLAGIRQSVRQTSRCFSTAFNYHVDSPDNNPDLTWEFSETNKKKIAEILSHYP 61

Query: 65  VGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEE 123
             ++++AVIPLLDLAQ+QH GWLP+SAM+ VA  + +  +RVYEVATFY+MF R  +G  
Sbjct: 62  SNYKQSAVIPLLDLAQQQHGGWLPVSAMNAVAKVVEVAPIRVYEVATFYSMFNRAKVG-- 119

Query: 124 RIKSILQYHLNWCTTTPCWLRNS----DAILEVIKKKCNMMLERQDLEPKDME 172
                 +YHL  C TTPC +R S    DA+L+ +  K N + +       +ME
Sbjct: 120 ------KYHLLVCGTTPCMIRGSREIEDALLKHLGVKRNEVTKDGLFSVGEME 166


>gi|67539814|ref|XP_663681.1| hypothetical protein AN6077.2 [Aspergillus nidulans FGSC A4]
 gi|40738862|gb|EAA58052.1| hypothetical protein AN6077.2 [Aspergillus nidulans FGSC A4]
 gi|259479738|tpe|CBF70234.1| TPA: NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           [Precursor] (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 270

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/151 (43%), Positives = 92/151 (60%), Gaps = 10/151 (6%)

Query: 7   KLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVG 66
           +    + R   R  S   +   D L VHR+T ++N  + F+F+  N++  E II+ YP  
Sbjct: 15  QFTRQISRPQFRPFSAAPQRLSDTLHVHRNTPENNPSIPFKFSEQNQQLIEEIIARYPPQ 74

Query: 67  HERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIK 126
           +++AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R+P+G     
Sbjct: 75  YKKAAVMPLLDLGQRQHGFTSISVMNEVARILEMPPMRVYEVATFYTMYNREPVG----- 129

Query: 127 SILQYHLNWCTTTPCWLR--NSDAILEVIKK 155
              +Y +  CTTTPC L    SD I++ I +
Sbjct: 130 ---KYFVQLCTTTPCQLGGCGSDKIVKAITE 157


>gi|393910526|gb|EJD75917.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, variant [Loa loa]
          Length = 190

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/156 (44%), Positives = 90/156 (57%), Gaps = 40/156 (25%)

Query: 70  AAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSIL 129
            A+IP+LDLAQRQHGWLPISAMH VA  L + +MRVYEVATFY+MF RKP+G+  ++   
Sbjct: 18  GALIPMLDLAQRQHGWLPISAMHEVARILGIARMRVYEVATFYSMFNRKPMGKNFVQV-- 75

Query: 130 QYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER-------------------------- 163
                 C TTPC LR +++I+E I KK  + +                            
Sbjct: 76  ------CGTTPCMLRGAESIMEAITKKLGIKVGETTSDGLFTLAEVECLGACVNAPMVQI 129

Query: 164 -----QDLEPKDMEQIIDDLKAGKKPAPGP-SGYTS 193
                +DL PKD+  I+D+ KAGK+P PGP SG T+
Sbjct: 130 NDDYYEDLTPKDISDILDEFKAGKRPKPGPRSGRTA 165


>gi|315050246|ref|XP_003174497.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
           118893]
 gi|311339812|gb|EFQ99014.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
           118893]
          Length = 267

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/248 (35%), Positives = 121/248 (48%), Gaps = 66/248 (26%)

Query: 18  RSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLD 77
           R+ +T   L  D L VHR+T  +N  + F+F+ +N    + I+  YP  +++AAV+PLLD
Sbjct: 27  RTFTTASPLMSDVLHVHRNTPTNNPTIPFKFSQENLTVIDEILKRYPPQYKKAAVMPLLD 86

Query: 78  LAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCT 137
           L QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R+P+G        +Y +  CT
Sbjct: 87  LGQRQHGYTSISVMNEVARMLEMPPMRVYEVATFYTMYNREPVG--------KYFVQICT 138

Query: 138 TTPCWL-----------------------RNSDAILEVIKKKC-----NMMLER------ 163
           TTPC L                          D I  V++ +C     N  + +      
Sbjct: 139 TTPCQLGGCGSDKIVKAITEHLGVSSHGATTPDGIFTVLEVECLGACVNAPMVQINDDYY 198

Query: 164 QDLEPKDMEQIIDDLKAG------------KKPAPGPSGYTSGIGSQSGRFCQAREAYHD 211
           +DL P+   Q++D LKA             K PAPGP          SGR  Q  E    
Sbjct: 199 EDLTPESTIQLLDALKASAVAAENGTQSSVKIPAPGP---------LSGR--QTCENSAG 247

Query: 212 MTSLTGEP 219
           +TSLT EP
Sbjct: 248 LTSLT-EP 254


>gi|307109153|gb|EFN57391.1| hypothetical protein CHLNCDRAFT_34626 [Chlorella variabilis]
          Length = 293

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/247 (34%), Positives = 120/247 (48%), Gaps = 64/247 (25%)

Query: 27  NHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GW 85
           +HD    HR    +N D +F+FT  N ++A  IIS YP  ++ +AVIPLLDLAQ+Q+ GW
Sbjct: 45  SHDIFNTHRHEAHNNWDTEFDFTDANYEKAAEIISRYPTNYKASAVIPLLDLAQQQNDGW 104

Query: 86  LPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRN 145
           L ++AM+ VA  L++P++RVYEVATFYTMF R  +G        +YH+  C TTPC L+ 
Sbjct: 105 LSLAAMNRVAKVLDMPEIRVYEVATFYTMFNRSKMG--------KYHVMVCGTTPCMLQG 156

Query: 146 SDAILEVIKKKCNMMLER-----------------------------------------Q 164
           +  I + +K+   +   +                                         +
Sbjct: 157 AKGIYKALKEHLGIDYGQTTPDGMFTLGEMECMGACVNAPMIAVADYTKGVEGFSYNYYE 216

Query: 165 DLEPKDMEQIIDDLKAGKKPAPG--------PSGYTSGIGSQSGRFCQAREAYHDMTSLT 216
           DL P D   IID LK G KP  G        P+G   G      ++  ++ A   MT L 
Sbjct: 217 DLTPADTLAIIDTLKKGGKPKVGSQHRSKAEPAGAVVG-----DKWVPSKPAPEQMT-LM 270

Query: 217 GEPHGPW 223
           GEP GP+
Sbjct: 271 GEPPGPY 277


>gi|313232017|emb|CBY09129.1| unnamed protein product [Oikopleura dioica]
          Length = 238

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/245 (36%), Positives = 125/245 (51%), Gaps = 58/245 (23%)

Query: 21  STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHER-AAVIPLLDLA 79
           ST+ R     +FVHRDTK+ N ++ FE+T +N  R +AI + YP GHE  A+++P+LDLA
Sbjct: 13  STSSR--RAGIFVHRDTKESNTEIPFEWTEENLVRIQAIKNQYPYGHENNASIMPVLDLA 70

Query: 80  QRQHG-WLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTT 138
           QRQ+G WLP+S M  VA  L++P +RVYEVATFYTM+ R P+G        +YH+  C T
Sbjct: 71  QRQYGGWLPLSVMDAVAATLDVPPIRVYEVATFYTMYKRVPVG--------KYHIQLCGT 122

Query: 139 TPCWLRNSDA--ILEVIKKKCNM----------------------------MLE-----R 163
           TPC +    A  I E I ++  +                            M++      
Sbjct: 123 TPCMIGGCGAKKIKEAILEEVGIGHHNDELTSDKMFSYEEVECLGACVNAPMVQINDDYY 182

Query: 164 QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPW 223
           +DL  +DM+ I+ DL+       GP         ++GR   + E     TSLT  P GP 
Sbjct: 183 EDLTEQDMKTILRDLRKDGFSRKGP---------RNGRV--SSEPLGGATSLTEPPTGPG 231

Query: 224 DSKRD 228
              RD
Sbjct: 232 FGVRD 236


>gi|302914918|ref|XP_003051270.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732208|gb|EEU45557.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 260

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/263 (33%), Positives = 128/263 (48%), Gaps = 44/263 (16%)

Query: 1   MLSNLAKLASNVVRQNVRS-LSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAI 59
           +L +  + A    R   R+  S + R   D+L VHR+TKD+N ++ F+F   N+     I
Sbjct: 8   LLRSALRPACRAARPQTRAAFSLSARRPSDSLMVHRNTKDNNPELPFKFNEKNQAVIAEI 67

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           +  YP  +++AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVA+FYTM+ R P
Sbjct: 68  LKKYPPQYKKAAVMPLLDLGQRQHGFTSISVMNEVARLLEMPPMRVYEVASFYTMYNRTP 127

Query: 120 IGEERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNM------------------ 159
           +G        ++ +  CTTTPC L    SD I++ IK    +                  
Sbjct: 128 VG--------KFFVQICTTTPCQLGGCGSDVIVKAIKNHLGIKQGETTADGLFTILEVEC 179

Query: 160 --------MLERQDLEPKDM--EQIIDDLKAGKKPAPGPSGYTSGI---GSQSGRFCQAR 206
                   M++  D   +D+  E ++D LKA K  A      T  +   G  SGR     
Sbjct: 180 LGACVNAPMIQINDDYYEDLTPESVVDLLKALKASATATDPSTVSVPKPGPLSGR--STC 237

Query: 207 EAYHDMTSLTGEPHGPWDSKRDF 229
           E     T+L  EP G   ++ D 
Sbjct: 238 ENSAGQTNLLAEPWGTETTRSDL 260


>gi|402703729|ref|ZP_10851708.1| NADH dehydrogenase subunit E [Rickettsia helvetica C9P9]
          Length = 164

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 62/123 (50%), Positives = 81/123 (65%), Gaps = 9/123 (7%)

Query: 42  LDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNL 100
           +   F F   N   AE II  YP   +R+A++PLLDLAQRQ+G WLP+ A+ YVA+ L +
Sbjct: 1   MSTNFTFDKKNLNLAEEIIKKYPPEGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEM 60

Query: 101 PKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMM 160
           P MR YEVATFYTMF  KP+G        +YH+  CTTTPCWLR SD I+++ +KK  + 
Sbjct: 61  PYMRAYEVATFYTMFNLKPVG--------KYHIQVCTTTPCWLRGSDDIMKICEKKLGVK 112

Query: 161 LER 163
           L+ 
Sbjct: 113 LKE 115


>gi|388502508|gb|AFK39320.1| unknown [Lotus japonicus]
          Length = 252

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/272 (34%), Positives = 135/272 (49%), Gaps = 67/272 (24%)

Query: 5   LAKLASN---VVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIIS 61
           LA+LA+N    +RQ  R    T+R    AL  H D+  +N +V +EFT  NK++A+ IIS
Sbjct: 2   LARLAANRLTEIRQIFRQ--PTRRAFSTALNYHLDSPVNNPNVPWEFTDVNKQKAKEIIS 59

Query: 62  IYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
            YP  ++++AVIPLLDLAQ+QH GWLP+SAM+ VA  + +  +RVYEVATFY+MF R  +
Sbjct: 60  NYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVARIIEVAPIRVYEVATFYSMFNRAKV 119

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNS----DAILEVIKKKCNMMLE-------------- 162
           G        +YHL  C TTPC +R S    +A+L  +  K N + +              
Sbjct: 120 G--------KYHLLVCGTTPCMIRGSREIEEALLNHLGVKRNEVTKDGLFSVGEMECMGC 171

Query: 163 -----------------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTS-GIGSQ 198
                                   +D+ PK + ++++ L+ G+KP PG         G +
Sbjct: 172 CVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVELVEMLRKGEKPPPGTQNPQRIKCGPE 231

Query: 199 SGRFCQAREAYHDMTSLTGEPHGPWDSKRDFC 230
            G            T+L GEP  P     D C
Sbjct: 232 GGN-----------TTLLGEPKPPPCRDLDAC 252


>gi|87200310|ref|YP_497567.1| NADH-quinone oxidoreductase subunit E [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135991|gb|ABD26733.1| NADH dehydrogenase subunit E [Novosphingobium aromaticivorans DSM
           12444]
          Length = 222

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/179 (40%), Positives = 98/179 (54%), Gaps = 45/179 (25%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADFL 98
           FE+TP+N ++A+ I++ YP G +R+AV+PLLDLAQRQ        GWLPI  M YVA +L
Sbjct: 20  FEWTPENAEKAKQIVARYPAGRQRSAVMPLLDLAQRQVGAELNTQGWLPIPVMEYVASYL 79

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK-- 156
           ++P +RV EVATFYTM+   PIG        ++H+  C TTPC LR SD IL   K K  
Sbjct: 80  DMPVIRVVEVATFYTMYNIAPIG--------RFHVQVCGTTPCMLRGSDDILAACKGKGL 131

Query: 157 -----------------------CNMMLE-----RQDLEPKDMEQIIDDLKAGKKPAPG 187
                                     M++      +DL   DME+I+D+L  GK+P  G
Sbjct: 132 KKGHTTPDGMFTLTEVECMGNCASAPMVQINDDNYEDLTAADMERILDELAEGKQPKTG 190


>gi|302758780|ref|XP_002962813.1| hypothetical protein SELMODRAFT_165405 [Selaginella moellendorffii]
 gi|300169674|gb|EFJ36276.1| hypothetical protein SELMODRAFT_165405 [Selaginella moellendorffii]
          Length = 254

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 62/132 (46%), Positives = 90/132 (68%), Gaps = 9/132 (6%)

Query: 25  RLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH- 83
           RL   AL +H +++D+N +  FEFT  N  +A+ I+S YP+ ++++AVIPLLDLAQ+QH 
Sbjct: 25  RLYSTALNLHINSQDNNENTPFEFTKANMDKAKEIMSHYPLNYKQSAVIPLLDLAQQQHG 84

Query: 84  GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL 143
           GWLP+SAM+ +A+ + +P +RVYEVATFY+MF R  +G        +YH+  C TTPC +
Sbjct: 85  GWLPVSAMNKIAEIIGVPSIRVYEVATFYSMFNRTKVG--------KYHIQVCGTTPCMI 136

Query: 144 RNSDAILEVIKK 155
           R S  I   + K
Sbjct: 137 RGSRDIEAALLK 148


>gi|401883012|gb|EJT47250.1| hypothetical protein A1Q1_04012 [Trichosporon asahii var. asahii
           CBS 2479]
 gi|406700299|gb|EKD03471.1| hypothetical protein A1Q2_02189 [Trichosporon asahii var. asahii
           CBS 8904]
          Length = 243

 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/246 (33%), Positives = 133/246 (54%), Gaps = 59/246 (23%)

Query: 19  SLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDL 78
           ++ST+  +  DA+ +  D+K +N  ++FE+TP++ ++ + +++ YP  +++AAV+P+LD+
Sbjct: 18  NVSTSAVVRSDAIMM--DSKHNNASIRFEWTPESLEQIKTVVARYPPQYKKAAVMPVLDI 75

Query: 79  AQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCT 137
           AQRQ+ GW+ +SAM+ VA  L +P MRVYEVA+FYTM+ R+P+    ++         CT
Sbjct: 76  AQRQNGGWVSLSAMNEVARTLEMPPMRVYEVASFYTMYNREPVAPNFVQ--------LCT 127

Query: 138 TTPCWLR--NSDAILEVIKKKCNM--------------------------MLE-----RQ 164
           TTPC L    S+ ILE I+K   +                          M++      +
Sbjct: 128 TTPCQLGGCGSNKILEAIEKHLGVTPGHTTPDGKFTFIEVECLGACSNAPMMQINDDYYE 187

Query: 165 DLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPWD 224
           DL P+   ++++ L  G+KP  GP         QSGR      A   +T+LT  P+GP  
Sbjct: 188 DLTPETAVKVLEALGRGEKPKAGP---------QSGRHTSENSA--GLTTLTTPPYGPG- 235

Query: 225 SKRDFC 230
              DFC
Sbjct: 236 ---DFC 238


>gi|242765195|ref|XP_002340925.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218724121|gb|EED23538.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 260

 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 113/221 (51%), Gaps = 47/221 (21%)

Query: 7   KLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVG 66
           ++   V +   RS S       D L VHR+  D+N  + F+F+ +N+K  + I+  YP  
Sbjct: 15  QIIPQVSKPQWRSFSAVAPKLSDTLHVHRNKPDNNPSIPFKFSKENEKIIDEILKRYPPQ 74

Query: 67  HERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIK 126
           +++AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R+P+G     
Sbjct: 75  YKKAAVMPLLDLGQRQHGFTSISVMNEVARLLEMPPMRVYEVATFYTMYNREPVG----- 129

Query: 127 SILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNM------------------------- 159
              +Y +  CTTTPC L    SD I++ I     +                         
Sbjct: 130 ---KYFVQVCTTTPCQLGGCGSDKIVQAINNHLGITPGHTTDDGLFTYIEVECLGACVNA 186

Query: 160 -MLE-----RQDLEPKDMEQIIDDLK------AGKKPAPGP 188
            M++      +DL P+ + Q++  LK      A K PAPGP
Sbjct: 187 PMVQINDDYYEDLTPESIVQLLTALKESATNPAAKVPAPGP 227


>gi|449513453|ref|XP_004164329.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Cucumis sativus]
          Length = 252

 Score =  126 bits (316), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 76/174 (43%), Positives = 107/174 (61%), Gaps = 14/174 (8%)

Query: 5   LAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEA-IISIY 63
           LA+LA+N +    +S+  T R    A   H D+ D+N D+ +EF+  NKKR  A I+S Y
Sbjct: 2   LARLAANRLAGIRQSVRQTSRCFSTAFNYHVDSPDNNPDLTWEFSETNKKRLIAEILSHY 61

Query: 64  PVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGE 122
           P  ++++AVIPLLDLAQ+QHG WLP+SAM+ VA  + +  +RVYEVATFY+MF R  +G 
Sbjct: 62  PSNYKQSAVIPLLDLAQQQHGGWLPVSAMNAVAKVVEVAPIRVYEVATFYSMFNRAKVG- 120

Query: 123 ERIKSILQYHLNWCTTTPCWLRNS----DAILEVIKKKCNMMLERQDLEPKDME 172
                  +YHL  C TTPC +R S    DA+L+ +  K N + +       +ME
Sbjct: 121 -------KYHLLVCGTTPCMIRGSREIEDALLKHLGVKRNEVTKDGLFSVGEME 167


>gi|225437209|ref|XP_002281655.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial [Vitis vinifera]
 gi|297735489|emb|CBI17929.3| unnamed protein product [Vitis vinifera]
          Length = 254

 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 92/273 (33%), Positives = 130/273 (47%), Gaps = 62/273 (22%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML+ LA      VRQ  R    T R    AL  H D+ D+N ++ +EF   NK + + I+
Sbjct: 1   MLARLATKRLLEVRQIFRQNHQTSRSFSTALNYHLDSPDNNPNIPWEFNDANKGKVKEIL 60

Query: 61  SIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           S YP  ++++AVIPLLDLAQ+QH GWLP+SAM  VA  + +  +RVYEVATFY+MF R  
Sbjct: 61  SHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMDAVAKVVEVAPIRVYEVATFYSMFNRAK 120

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNS----DAILEVIKKKCNMMLE------------- 162
           +G        +YHL  C TTPC +R S    DA+L+ +  K N + +             
Sbjct: 121 VG--------KYHLLVCGTTPCMIRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMG 172

Query: 163 ------------------------RQDLEPKDMEQIIDDLKAGKKPAPGPSG-YTSGIGS 197
                                    +D+ PK + +I++ L+ G+KP  G      +  G 
Sbjct: 173 CCVNAPMITVADYSTGSEGYTYNYYEDVTPKRVVEIVEMLRRGEKPPHGTQNPQRTRCGP 232

Query: 198 QSGRFCQAREAYHDMTSLTGEPHGPWDSKRDFC 230
           + G            T+L GEP  P     D C
Sbjct: 233 EGGN-----------TTLLGEPKAPPCRDLDAC 254


>gi|258574547|ref|XP_002541455.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Uncinocarpus reesii
           1704]
 gi|237901721|gb|EEP76122.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Uncinocarpus reesii
           1704]
          Length = 264

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/220 (38%), Positives = 113/220 (51%), Gaps = 53/220 (24%)

Query: 13  VRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           VRQ  R  +    +  +AL VHR++ ++N ++ F+FT  N K  + I+  YP  +++AAV
Sbjct: 22  VRQ-CRQFTVATPVRSEALAVHRNSPENNPNIPFKFTEQNLKVIDEIVKRYPPQYKKAAV 80

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +PLLDL QRQ GW  IS M+ VA  L +P MRVYEVATFYTM+ R P+G        +Y 
Sbjct: 81  MPLLDLGQRQLGWTSISVMNEVARILEMPPMRVYEVATFYTMYNRDPVG--------KYF 132

Query: 133 LNWCTTTPCWLR--NSDAILEVIKK-------------KCNMMLE--------------- 162
           +  CTTTPC L    SD I+E I K             K   +LE               
Sbjct: 133 VQICTTTPCQLGGCGSDKIVEAITKHLGVHSHGQTTPDKLFTVLEVECLGACVNAPMVQI 192

Query: 163 ----RQDLEPKDMEQIIDDLK-------AGKK---PAPGP 188
                +DL P    Q+++ LK       +GKK   PAPGP
Sbjct: 193 NDEYYEDLTPDTAVQLLEALKESALAGESGKKVKVPAPGP 232


>gi|429855368|gb|ELA30326.1| nadh-ubiquinone oxidoreductase 24 kda subunit [Colletotrichum
           gloeosporioides Nara gc5]
          Length = 242

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 115/233 (49%), Gaps = 48/233 (20%)

Query: 1   MLSNLAKL-------ASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNK 53
           M S LA L       ++   R  +R+LS T     D L VHRD+ ++N DV F+F  +N+
Sbjct: 1   MASRLAPLFFRSALRSTRAARPQIRALSVTAVRPSDTLQVHRDSPENNADVPFKFNKENE 60

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
                I+  YP  +++AAV+P+LDL QRQHG+  IS M+ VA  L +P  RV+EVA+FYT
Sbjct: 61  AIIAEILKRYPPQYKKAAVMPILDLGQRQHGFTSISVMNEVARMLEMPPQRVFEVASFYT 120

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLR--NSDAILEVI------------KKKCNM 159
           M+ R P+G        +Y +  CTTTPC L    SD I++ I            K     
Sbjct: 121 MYNRTPVG--------KYFIQACTTTPCQLGGVGSDVIVKAIIDHLGIKQGETTKDGLFT 172

Query: 160 MLE-------------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTS 193
           +LE                    +DL P+   Q++D LKA +    GP    S
Sbjct: 173 LLEVECLGACVNAPMIQINDDYYEDLTPETTVQLLDALKATRLRRKGPQARPS 225


>gi|119193296|ref|XP_001247254.1| hypothetical protein CIMG_01025 [Coccidioides immitis RS]
 gi|392863506|gb|EAS35740.2| NADH-quinone oxidoreductase, E subunit [Coccidioides immitis RS]
          Length = 264

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/248 (36%), Positives = 124/248 (50%), Gaps = 64/248 (25%)

Query: 13  VRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           VRQ  R  +    +  D L VHR+T ++N  + F+F+  N K  + I+  YP  +++AAV
Sbjct: 22  VRQ-CRQFTAATPVLSDILAVHRNTPENNPSIPFKFSEQNLKVIDEILKRYPPQYKKAAV 80

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +PLLDL QRQ GW  IS M+ VA  L +P MRVYEVATFYTM+ R+P+G        +Y 
Sbjct: 81  MPLLDLGQRQLGWTSISVMNEVARILEMPPMRVYEVATFYTMYNREPVG--------KYF 132

Query: 133 LNWCTTTPCWLR--NSDAILEVIKK-------------KCNMMLE--------------- 162
           +  CTTTPC L    SD I+E I K             K   +LE               
Sbjct: 133 VQICTTTPCQLGGCGSDKIVEAITKHLGVSSHGQTTPDKLFTVLEVECLGACVNAPMVQI 192

Query: 163 ----RQDLEPKDMEQIIDDLK-------AGKK---PAPGPSGYTSGIGSQSGRFCQAREA 208
                +DL P+   Q+++ LK       +GKK   P+PGP          SGR  ++ E 
Sbjct: 193 NDDYYEDLTPETAVQLLNALKESALAGESGKKVNIPSPGP---------MSGR--ESCEN 241

Query: 209 YHDMTSLT 216
              +TSLT
Sbjct: 242 SAGLTSLT 249


>gi|303312197|ref|XP_003066110.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240105772|gb|EER23965.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320040098|gb|EFW22032.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Coccidioides
           posadasii str. Silveira]
          Length = 264

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/248 (36%), Positives = 124/248 (50%), Gaps = 64/248 (25%)

Query: 13  VRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           VRQ  R  +    +  D L VHR+T ++N  + F+F+  N K  + I+  YP  +++AAV
Sbjct: 22  VRQ-CRQFTAATPVLSDILAVHRNTPENNPSIPFKFSEQNLKVIDEILKRYPPQYKKAAV 80

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +PLLDL QRQ GW  IS M+ VA  L +P MRVYEVATFYTM+ R+P+G        +Y 
Sbjct: 81  MPLLDLGQRQLGWTSISVMNEVARILEMPPMRVYEVATFYTMYNREPVG--------KYF 132

Query: 133 LNWCTTTPCWLR--NSDAILEVIKK-------------KCNMMLE--------------- 162
           +  CTTTPC L    SD I+E I K             K   +LE               
Sbjct: 133 VQICTTTPCQLGGCGSDKIVEAITKHLGVSSHGQTTPDKLFTVLEVECLGACVNAPMVQI 192

Query: 163 ----RQDLEPKDMEQIIDDLK-------AGKK---PAPGPSGYTSGIGSQSGRFCQAREA 208
                +DL P+   Q+++ LK       +GKK   P+PGP          SGR  ++ E 
Sbjct: 193 NDDYYEDLTPETAVQLLNALKESALAGESGKKVNIPSPGP---------MSGR--ESCEN 241

Query: 209 YHDMTSLT 216
              +TSLT
Sbjct: 242 SAGLTSLT 249


>gi|327303102|ref|XP_003236243.1| NADH-ubiquinone oxidoreductase subunit [Trichophyton rubrum CBS
           118892]
 gi|326461585|gb|EGD87038.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Trichophyton rubrum
           CBS 118892]
          Length = 267

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/217 (35%), Positives = 109/217 (50%), Gaps = 54/217 (24%)

Query: 18  RSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLD 77
           R+L+T   L  D L VHR+T  +N  + F+F+ +N    + I+  YP  +++AAV+PLLD
Sbjct: 27  RTLTTASPLMSDVLHVHRNTPTNNPTIPFKFSQENLTVIDEILKRYPPQYKKAAVMPLLD 86

Query: 78  LAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCT 137
           L QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R+P+G        +Y +  CT
Sbjct: 87  LGQRQHGYTSISVMNEVARMLEMPPMRVYEVATFYTMYNREPVG--------KYFVQICT 138

Query: 138 TTPCWL-----------------------RNSDAILEVIKKKC-----NMMLER------ 163
           TTPC L                          D I  V++ +C     N  + +      
Sbjct: 139 TTPCQLGGCGSDKIVKAITEHLGVSSHGATTPDGIFTVLEVECLGACVNAPMVQINDDYY 198

Query: 164 QDLEPKDMEQIIDDLKAG------------KKPAPGP 188
           +DL P+   Q++D L+A             K P PGP
Sbjct: 199 EDLTPESTIQLLDALRASAVAAENGTQSSVKVPPPGP 235


>gi|225704226|gb|ACO07959.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Oncorhynchus mykiss]
          Length = 205

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 119/259 (45%), Gaps = 91/259 (35%)

Query: 1   MLSNLAKLASNVVRQNVRSL-STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAI 59
           + S +  + S   RQ VRSL  +  R     +FVHRDT D+N D  FEFT DN K     
Sbjct: 3   LTSAIRSVVSQASRQ-VRSLHQSAARAGAGGIFVHRDTPDNNPDTPFEFTVDNLK----- 56

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
                                             VA+ L +P MR+YEVATFYTMF+R+P
Sbjct: 57  ----------------------------------VAEVLEVPPMRIYEVATFYTMFLRQP 82

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM------------MLE----- 162
           +G        +YH+  CTTTPC L +SD+ILE ++ K  +            ++E     
Sbjct: 83  VG--------KYHIQICTTTPCMLCDSDSILEALQNKLGIKVGGMTADKMFSLIEVECLG 134

Query: 163 --------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREA 208
                          +DL PKD++QIID+LKAG+ P PGP         ++GRF  + E 
Sbjct: 135 ACVNAPMVQINDNYYEDLSPKDIDQIIDELKAGQVPPPGP---------RNGRF--SCEP 183

Query: 209 YHDMTSLTGEPHGPWDSKR 227
              +TSL+  P GP    R
Sbjct: 184 AGGLTSLSEPPPGPGFGVR 202


>gi|326471327|gb|EGD95336.1| NADH-ubiquinone dehydrogenase 24 kDa subunit [Trichophyton
           tonsurans CBS 112818]
 gi|326479421|gb|EGE03431.1| NADH-ubiquinone dehydrogenase 24 kDa subunit [Trichophyton equinum
           CBS 127.97]
          Length = 267

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/217 (35%), Positives = 108/217 (49%), Gaps = 54/217 (24%)

Query: 18  RSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLD 77
           R+ +T   L  D L VHR+T  +N  + F+F+ +N    + I+  YP  +++AAV+PLLD
Sbjct: 27  RTFTTASPLMSDVLHVHRNTPSNNPTIPFKFSQENLTVIDEILKRYPPQYKKAAVMPLLD 86

Query: 78  LAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCT 137
           L QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R+P+G        +Y +  CT
Sbjct: 87  LGQRQHGYTSISVMNEVARMLEMPPMRVYEVATFYTMYNREPVG--------KYFVQICT 138

Query: 138 TTPCWL-----------------------RNSDAILEVIKKKC-----NMMLER------ 163
           TTPC L                          D I  V++ +C     N  + +      
Sbjct: 139 TTPCQLGGCGSDKIVKAITEHLGVSSHGATTPDGIFTVLEVECLGACVNAPMVQINDDYY 198

Query: 164 QDLEPKDMEQIIDDLKAG------------KKPAPGP 188
           +DL P+   Q++D LKA             K P PGP
Sbjct: 199 EDLTPESTIQLLDALKASAVAAENGTQSSVKVPPPGP 235


>gi|358369878|dbj|GAA86491.1| NADH-ubiquinone dehydrogenase 24 kDa subunit [Aspergillus kawachii
           IFO 4308]
          Length = 269

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 92/151 (60%), Gaps = 10/151 (6%)

Query: 7   KLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVG 66
           +L   + +   R  S   +   D+L VHR+  D+N +V F+FT  N K  + I+  YP  
Sbjct: 15  QLFQQIPKTQFRPFSAGPQRFSDSLAVHRNKGDNNPNVPFKFTEQNLKLIDEILKRYPPQ 74

Query: 67  HERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIK 126
           +++AAV+P+LD+ QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R+P+G     
Sbjct: 75  YKKAAVMPVLDVGQRQHGYTSISVMNEVARLLEMPPMRVYEVATFYTMYNREPVG----- 129

Query: 127 SILQYHLNWCTTTPCWLR--NSDAILEVIKK 155
              +Y +  CTTTPC L    SD I++ I +
Sbjct: 130 ---KYFVQLCTTTPCQLGGCGSDKIVQAITE 157


>gi|302509584|ref|XP_003016752.1| hypothetical protein ARB_05044 [Arthroderma benhamiae CBS 112371]
 gi|291180322|gb|EFE36107.1| hypothetical protein ARB_05044 [Arthroderma benhamiae CBS 112371]
          Length = 267

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/217 (35%), Positives = 108/217 (49%), Gaps = 54/217 (24%)

Query: 18  RSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLD 77
           R+ +T   L  D L VHR+T  +N  + F+F+ +N    + I+  YP  +++AAV+PLLD
Sbjct: 27  RTFTTASPLMSDVLHVHRNTPTNNPTIPFKFSQENLTVIDEILKRYPPQYKKAAVMPLLD 86

Query: 78  LAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCT 137
           L QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R+P+G        +Y +  CT
Sbjct: 87  LGQRQHGYTSISVMNEVARMLEMPPMRVYEVATFYTMYNREPVG--------KYFVQICT 138

Query: 138 TTPCWL-----------------------RNSDAILEVIKKKC-----NMMLER------ 163
           TTPC L                          D I  V++ +C     N  + +      
Sbjct: 139 TTPCQLGGCGSDKIVKAITEHLGVSSHGATTPDGIFTVLEVECLGACVNAPMVQINDDYY 198

Query: 164 QDLEPKDMEQIIDDLKAG------------KKPAPGP 188
           +DL P+   Q++D LKA             K P PGP
Sbjct: 199 EDLTPESTIQLLDALKASAVAAENGTQSSVKVPPPGP 235


>gi|357455293|ref|XP_003597927.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Medicago truncatula]
 gi|355486975|gb|AES68178.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Medicago truncatula]
          Length = 251

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 94/152 (61%), Gaps = 9/152 (5%)

Query: 5   LAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYP 64
           LA+LA+N + Q  ++     R    AL  H D+ D+N ++ +EF   NK + + IIS YP
Sbjct: 2   LARLAANRLNQIRQTFHQPSRAFSTALNYHLDSPDNNPNLPWEFNDANKAKVKEIISHYP 61

Query: 65  VGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEE 123
             ++++AVIPLLDLAQ+QH GWLP+SAM  VA  + +  +RVYEVATFY+MF R  +G  
Sbjct: 62  SNYKQSAVIPLLDLAQQQHGGWLPVSAMDAVAKVIEVAPIRVYEVATFYSMFNRSKVG-- 119

Query: 124 RIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
                 +YHL  C TTPC +R S  I   + K
Sbjct: 120 ------KYHLLVCGTTPCMIRGSREIEAALLK 145


>gi|296416125|ref|XP_002837731.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633614|emb|CAZ81922.1| unnamed protein product [Tuber melanosporum]
          Length = 263

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/120 (47%), Positives = 82/120 (68%), Gaps = 8/120 (6%)

Query: 36  DTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVA 95
           +T  ++  + F FTP N++  + I+  YP  +++AAV+PLLDL QRQHG+  IS M+ VA
Sbjct: 11  NTPQNDPSIPFSFTPQNQQLIDEILKRYPPQYQKAAVMPLLDLGQRQHGFASISVMNEVA 70

Query: 96  DFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
             L +P MRVYEVATFYTM+ R P+G        +YHL  CTTTPC L +SD++++ ++K
Sbjct: 71  RILEMPPMRVYEVATFYTMYNRDPVG--------KYHLQVCTTTPCMLCDSDSVMQAVEK 122


>gi|261195102|ref|XP_002623955.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces
           dermatitidis SLH14081]
 gi|239587827|gb|EEQ70470.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces
           dermatitidis SLH14081]
 gi|239610685|gb|EEQ87672.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces
           dermatitidis ER-3]
 gi|327348878|gb|EGE77735.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 259

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 91/143 (63%), Gaps = 11/143 (7%)

Query: 13  VRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           VRQ  R  +    L  +   VHR+T ++N ++ F+F+ +N K  + I+  YP  +++AAV
Sbjct: 22  VRQ-CRPFTVAAPLRSEIFAVHRNTPENNPNIPFKFSEENLKLIDEILLRYPPQYKKAAV 80

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           +PLLDL QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R+P+G        +YH
Sbjct: 81  MPLLDLGQRQHGYTSISVMNEVARMLEMPPMRVYEVATFYTMYNREPVG--------KYH 132

Query: 133 LNWCTTTPCWLR--NSDAILEVI 153
           +  CTTTPC L    SD I++ +
Sbjct: 133 VKVCTTTPCQLGGCGSDKIMKAV 155


>gi|144899469|emb|CAM76333.1| NADH-quinone oxidoreductase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 201

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/176 (36%), Positives = 96/176 (54%), Gaps = 39/176 (22%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTP+N + A+ II+ YP G +++AV+PLLDLAQRQ GW  I+ + Y+A+ L +  +RV
Sbjct: 10  FAFTPENLETAKKIIAKYPAGRQQSAVMPLLDLAQRQVGWTSIAVIEYIAEMLEMAPIRV 69

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM------ 159
            EV TFYTM+ +KP+G        QYH+  CT   C LR SD + E +K+   +      
Sbjct: 70  QEVVTFYTMYNQKPVG--------QYHVQVCTNICCLLRGSDGVGETVKELLGVEWGETT 121

Query: 160 --------------------MLE-----RQDLEPKDMEQIIDDLKAGKKPAPGPSG 190
                               M++      +DL P+  + +++ LK G+ PAPGP G
Sbjct: 122 ADGKFTLAEVECLGACVNAPMMQINDDYYEDLTPESTKAVLEALKRGETPAPGPQG 177


>gi|157825612|ref|YP_001493332.1| NADH dehydrogenase subunit E [Rickettsia akari str. Hartford]
 gi|157799570|gb|ABV74824.1| NADH dehydrogenase subunit E [Rickettsia akari str. Hartford]
          Length = 167

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 93/166 (56%), Gaps = 40/166 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F F   N   AE II  YP   +R+A++PLLDLAQRQ+G WLP+ A+ YVA+ L +P MR
Sbjct: 8   FTFDKKNLNLAEDIIKKYPPEGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPYMR 67

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER- 163
            YEVATFYTMF  K +G        +YH++ CTTTPCWLR SD I+++ KKK  + L+  
Sbjct: 68  AYEVATFYTMFNLKRVG--------KYHIHVCTTTPCWLRGSDDIMKICKKKLGIKLKET 119

Query: 164 ------------------------------QDLEPKDMEQIIDDLK 179
                                         +DL P+ ME++ID L+
Sbjct: 120 TEDQKFTLSEIECLGACVNAPVLQINDDYYEDLTPEKMEKLIDRLQ 165


>gi|219126692|ref|XP_002183585.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404822|gb|EEC44767.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 260

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/154 (42%), Positives = 94/154 (61%), Gaps = 16/154 (10%)

Query: 3   SNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISI 62
           S  A   S V+R   R+ +  +         H DT ++NL+V F+FT +N  R + I++ 
Sbjct: 8   SRFASKLSPVIRSQSRTFAGQKPF-------HIDTPENNLEVHFDFTLENYDRVKYIMAK 60

Query: 63  YPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIG 121
           YP  +++AA+IPLLDLAQRQH GWLP++AMH VA    +  +RVYEVA+FYTMF R P+G
Sbjct: 61  YPNNYKQAAMIPLLDLAQRQHGGWLPLTAMHKVAAICEVAPVRVYEVASFYTMFNRNPVG 120

Query: 122 EERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
                   +Y +  C TTPC +  S+ I + I+K
Sbjct: 121 --------KYFIQLCGTTPCMICGSEDIKQTIEK 146


>gi|348666689|gb|EGZ06516.1| hypothetical protein PHYSODRAFT_566176 [Phytophthora sojae]
          Length = 274

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 96/155 (61%), Gaps = 9/155 (5%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           + +  A+L++     +  +   + R    +   HRDT+D+N D  F+FTP+N +R  AI+
Sbjct: 9   LRAGAAQLSARPAAASTTAGFHSSRAAGSSFVQHRDTEDNNADTPFDFTPENYERVHAIL 68

Query: 61  SIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
             YP  ++ +A+IPLLDLAQRQH GWLP++AM+ VA  ++   ++VYEVATFYTMF R+ 
Sbjct: 69  DRYPENYKTSAIIPLLDLAQRQHGGWLPLAAMNKVARIVDAKPIQVYEVATFYTMFNREK 128

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIK 154
           +G        +Y +  C TTPC +  S+ I + I+
Sbjct: 129 VG--------KYFIQLCGTTPCMICGSEEIKKTIE 155


>gi|195017667|ref|XP_001984640.1| GH14917 [Drosophila grimshawi]
 gi|193898122|gb|EDV96988.1| GH14917 [Drosophila grimshawi]
          Length = 248

 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 105/221 (47%), Gaps = 58/221 (26%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR 104
           KFEFT +NK RA+ ++S YP    R A++PLLD+AQRQHGWLPI+A+  VA  L L    
Sbjct: 44  KFEFTAENKCRAQELLSHYPENEMRGALLPLLDIAQRQHGWLPITAIQAVASLLKLEPFA 103

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLE-- 162
           V+EVA+FYTMF   P+G        ++H+  C TTPC LR    IL+    KC  +L   
Sbjct: 104 VWEVASFYTMFNLTPVG--------KFHIKVCMTTPCQLRGCAQILQ----KCEELLHLK 151

Query: 163 ---------------------------------RQDLEPKDMEQIIDDLKAGKKPAPGPS 189
                                             +DL  KD+E I+  LKAG  P  GP 
Sbjct: 152 AGETSEDMEFTLKTTYCIGACVHAPVMTVNDDLYEDLHIKDVENILCQLKAGNVPPCGP- 210

Query: 190 GYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPWDSKRDFC 230
                   + GRF  A E    +T+L  EP       +D C
Sbjct: 211 --------RKGRF--ANEPSSGVTTLFIEPPPAGYGMQDIC 241


>gi|15604221|ref|NP_220737.1| NADH dehydrogenase subunit E [Rickettsia prowazekii str. Madrid E]
 gi|383487191|ref|YP_005404871.1| NADH dehydrogenase subunit E [Rickettsia prowazekii str. GvV257]
 gi|383487768|ref|YP_005405447.1| NADH dehydrogenase subunit E [Rickettsia prowazekii str.
           Chernikova]
 gi|383488615|ref|YP_005406293.1| NADH dehydrogenase subunit E [Rickettsia prowazekii str.
           Katsinyian]
 gi|383489455|ref|YP_005407132.1| NADH dehydrogenase subunit E [Rickettsia prowazekii str. Dachau]
 gi|383499593|ref|YP_005412954.1| NADH dehydrogenase subunit E [Rickettsia prowazekii str.
           BuV67-CWPP]
 gi|383500430|ref|YP_005413790.1| NADH dehydrogenase subunit E [Rickettsia prowazekii str. RpGvF24]
 gi|386082198|ref|YP_005998775.1| NADH dehydrogenase I subunit E [Rickettsia prowazekii str. Rp22]
 gi|6647681|sp|Q9ZDH5.1|NUOE_RICPR RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|3860913|emb|CAA14813.1| NADH DEHYDROGENASE I CHAIN E (nuoE) [Rickettsia prowazekii str.
           Madrid E]
 gi|292571962|gb|ADE29877.1| NADH dehydrogenase I chain E [Rickettsia prowazekii str. Rp22]
 gi|380757556|gb|AFE52793.1| NADH dehydrogenase subunit E [Rickettsia prowazekii str. GvV257]
 gi|380758127|gb|AFE53363.1| NADH dehydrogenase subunit E [Rickettsia prowazekii str. RpGvF24]
 gi|380760647|gb|AFE49169.1| NADH dehydrogenase subunit E [Rickettsia prowazekii str.
           Chernikova]
 gi|380761494|gb|AFE50015.1| NADH dehydrogenase subunit E [Rickettsia prowazekii str.
           Katsinyian]
 gi|380762339|gb|AFE50859.1| NADH dehydrogenase subunit E [Rickettsia prowazekii str.
           BuV67-CWPP]
 gi|380763178|gb|AFE51697.1| NADH dehydrogenase subunit E [Rickettsia prowazekii str. Dachau]
          Length = 177

 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 61/115 (53%), Positives = 77/115 (66%), Gaps = 9/115 (7%)

Query: 43  DVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLP 101
           +  F F   N   AE II  YP   +R+A++PLLDLAQRQ+G WL +SA+ YVA+ L +P
Sbjct: 7   NFTFAFDKKNLNLAETIIKKYPPEGKRSAILPLLDLAQRQNGGWLHVSAIEYVANMLEMP 66

Query: 102 KMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
            MR YEVATFYTMF   PIG        +YH+  CTTTPCWLR SD I+++ +KK
Sbjct: 67  YMRAYEVATFYTMFNLNPIG--------KYHIQVCTTTPCWLRGSDNIMKICEKK 113


>gi|295673278|ref|XP_002797185.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Paracoccidioides sp.
           'lutzii' Pb01]
 gi|226282557|gb|EEH38123.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Paracoccidioides sp.
           'lutzii' Pb01]
          Length = 259

 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 112/220 (50%), Gaps = 47/220 (21%)

Query: 8   LASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGH 67
           L S V  +  R  +    L  + L VHR+T ++N ++ F+F+  N K  + I+  YP  +
Sbjct: 16  LFSCVSARQCRPFTVAAPLRSETLAVHRNTPENNPNIPFQFSEQNLKLIDEILRRYPPQY 75

Query: 68  ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKS 127
           ++AAV+P+LDL QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R+P+G      
Sbjct: 76  KKAAVMPVLDLGQRQHGFTSISVMNEVARLLEMPPMRVYEVATFYTMYNREPVG------ 129

Query: 128 ILQYHLNWCTTTPCWL----------------------RNSDAILEVIKKKC-----NMM 160
             +Y +  CTTTPC L                        SD +  V++ +C     N  
Sbjct: 130 --KYFVQVCTTTPCQLGGCGSAKVMKAITDHLGVSNGQTTSDKLFTVLEVECLGACVNAP 187

Query: 161 LER------QDLEPKDMEQIIDDLKAG------KKPAPGP 188
           + +      +DL P+ +  ++  LK        K PAPGP
Sbjct: 188 MVQINDDYYEDLTPESVVSLLTALKQAETDVTVKVPAPGP 227


>gi|353327947|ref|ZP_08970274.1| NADH dehydrogenase subunit E [Wolbachia endosymbiont wVitB of
           Nasonia vitripennis]
          Length = 166

 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 59/112 (52%), Positives = 75/112 (66%), Gaps = 8/112 (7%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR 104
           +F FTPDN  +A+  I +YP G E +AV+PLL L Q Q GW+P SAM YVAD L++P +R
Sbjct: 7   QFSFTPDNLSKAKKSIEMYPKGREGSAVMPLLYLVQEQCGWVPESAMRYVADMLHIPHIR 66

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VYEVA FYTM+  KP+G        +Y +  C TTPCWL NS+ +L   KKK
Sbjct: 67  VYEVANFYTMYNLKPVG--------KYLIQVCRTTPCWLCNSEEVLSTFKKK 110


>gi|225681024|gb|EEH19308.1| NADH dehydrogenase flavoprotein [Paracoccidioides brasiliensis
           Pb03]
 gi|226292282|gb|EEH47702.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Paracoccidioides
           brasiliensis Pb18]
          Length = 259

 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 127/260 (48%), Gaps = 58/260 (22%)

Query: 8   LASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGH 67
           L S V  +  R  +    L  + L VHR+T ++N ++ F+F+  N K  + I+  YP  +
Sbjct: 16  LFSCVSTRQCRPFTVAAPLRSETLAVHRNTPENNPNIPFKFSEQNLKLIDEILRRYPPQY 75

Query: 68  ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKS 127
           ++AAV+P+LDL QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R+P+G      
Sbjct: 76  KKAAVMPVLDLGQRQHGFTSISVMNEVARLLEMPPMRVYEVATFYTMYNREPVG------ 129

Query: 128 ILQYHLNWCTTTPCWL----------------------RNSDAILEVIKKKC-----NMM 160
             +Y +  CTTTPC L                        SD +  V++ +C     N  
Sbjct: 130 --KYFVQVCTTTPCQLGGCGSAKVMKAITDHLGVSNGQTTSDKLFTVLEVECLGACVNAP 187

Query: 161 LER------QDLEPKDMEQIIDDLKAG------KKPAPGPSGYTSGIGSQSGRFCQAREA 208
           + +      +DL P+ +  ++  LK        K PAPGP          SGR  ++ E 
Sbjct: 188 MVQINDDYYEDLTPESVVSLLTALKQAETDTTVKVPAPGP---------LSGR--KSCEN 236

Query: 209 YHDMTSLTGEPHGPWDSKRD 228
              +T+LT     P   ++D
Sbjct: 237 SAGLTNLTNPSWSPDRMRKD 256


>gi|334344826|ref|YP_004553378.1| NADH-quinone oxidoreductase subunit E [Sphingobium chlorophenolicum
           L-1]
 gi|334101448|gb|AEG48872.1| NADH-quinone oxidoreductase, E subunit [Sphingobium
           chlorophenolicum L-1]
          Length = 222

 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 95/180 (52%), Gaps = 45/180 (25%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADFL 98
           F +T +N ++A+ +I+ YP G +++AV+PLLDLAQRQ       +GWLP+  M Y+AD L
Sbjct: 20  FAWTAENAEQAKKVIARYPAGRQQSAVMPLLDLAQRQVGAETQTNGWLPVPVMEYIADQL 79

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK-- 156
            +P MRVYEVATFYTM+   P+G        +YH+  C TTPC LR SD +    K K  
Sbjct: 80  EMPYMRVYEVATFYTMYNLAPVG--------RYHVQVCGTTPCMLRGSDDVFSACKNKGL 131

Query: 157 ----------------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGP 188
                                  N  + +      +DL    M  I+DDL AGK+P  GP
Sbjct: 132 VKGGTTPDGLFTLSEVECLGACANAPMVQINDDNFEDLTYDSMSAILDDLAAGKQPKIGP 191


>gi|281200385|gb|EFA74605.1| NADH dehydrogenase [Polysphondylium pallidum PN500]
          Length = 342

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 123/244 (50%), Gaps = 53/244 (21%)

Query: 3   SNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISI 62
           SN + +AS  ++Q  R   T++ L  DAL  H +T+++N    F+F  +N  + E I+S 
Sbjct: 9   SNRSTVAS-FLKQ--RQYHTSRPLFSDALSRHIETEENNDHTPFDFNEENMVKVEKILSK 65

Query: 63  YPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIG 121
           YP  + ++A+IPLLDLAQRQ+ GW+ + AM  VA+ + +P M  YEVA+FYTMF R  IG
Sbjct: 66  YPPAYRQSAMIPLLDLAQRQNGGWISLRAMDKVAEIIGVPPMEAYEVASFYTMFNRTKIG 125

Query: 122 EERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER------------------ 163
           +  ++         CTTTPC LR S AIL+  K    + +                    
Sbjct: 126 KNFVQ--------VCTTTPCMLRGSTAILDACKHHLKIGVGETTKDDVFTLAEVECLGAC 177

Query: 164 -------------QDLEPKDMEQIIDDLKAGK----------KPAPGPSGYTSGIGSQSG 200
                        +DL P  M+ +++ ++ GK          K A GP G T+ +   SG
Sbjct: 178 VNAPMICINDDFYEDLTPDSMKNLLNQIQNGKETKIGPQTHRKAAEGPQGKTTLLEQPSG 237

Query: 201 RFCQ 204
            FC+
Sbjct: 238 PFCR 241


>gi|425773030|gb|EKV11405.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Penicillium
           digitatum PHI26]
 gi|425782200|gb|EKV20123.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Penicillium
           digitatum Pd1]
          Length = 270

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 65/151 (43%), Positives = 92/151 (60%), Gaps = 10/151 (6%)

Query: 7   KLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVG 66
           +L   + +   R+ S   +   D+L VHR+T  +N  + F+F+  N K A+ I+  YP  
Sbjct: 14  QLVHQLPKPQYRAFSAGSQRFSDSLSVHRNTPKNNPTLPFKFSEQNLKLADEILKRYPPQ 73

Query: 67  HERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIK 126
           +++AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R+P+G     
Sbjct: 74  YKKAAVMPLLDLGQRQHGFTSISVMNEVARMLEMPPMRVYEVATFYTMYNREPVG----- 128

Query: 127 SILQYHLNWCTTTPCWLR--NSDAILEVIKK 155
              +Y +  CTTTPC L    S AI+  I +
Sbjct: 129 ---KYFVQICTTTPCQLGGCGSTAIVNAITE 156


>gi|195125782|ref|XP_002007355.1| GI12897 [Drosophila mojavensis]
 gi|193918964|gb|EDW17831.1| GI12897 [Drosophila mojavensis]
          Length = 246

 Score =  123 bits (308), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 94/259 (36%), Positives = 125/259 (48%), Gaps = 70/259 (27%)

Query: 1   MLSNLAKL--ASNVVRQN--VRSLSTTQ-RLNHDALFVHRDTKDDNLDVKFEFTPDNKKR 55
           M +NL +L     +V Q   +R+LST++ R   DA  ++         +KFEF  +NKKR
Sbjct: 1   MFANLLRLYQLPRLVLQAPPIRALSTSEPRFKLDACNLYEK-------LKFEFDEENKKR 53

Query: 56  AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMF 115
           AE +IS YP    R A++PLLDLAQRQHGWLPI+A+  VA+ L L    V+EVA FYTMF
Sbjct: 54  AEFLISTYPEPERRGALLPLLDLAQRQHGWLPITAIQAVAEMLKLEPFVVWEVANFYTMF 113

Query: 116 IRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLERQDLE-PKDM--- 171
             +PIG         + L  C TTPC LR  D I     + C  +L+ +D E  KDM   
Sbjct: 114 NLRPIG--------MFRLKVCMTTPCRLRGCDEIW----RTCENVLKLKDGETSKDMQFT 161

Query: 172 -------------------------------EQIIDDLKAGKKPAPGPSGYTSGIGSQSG 200
                                          E+++ +LK+G  P  GP         +  
Sbjct: 162 LTATYCMGACVNGPVIAVNDDLYEDLDVPETEKLLSELKSGIMPPAGP---------RRD 212

Query: 201 RFCQAREAYHDMTSLTGEP 219
           RF  A E    +TSL  EP
Sbjct: 213 RF--ASEPRSGLTSLLTEP 229


>gi|239947495|ref|ZP_04699248.1| NADH-quinone oxidoreductase subunit E [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921771|gb|EER21795.1| NADH-quinone oxidoreductase subunit E [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 164

 Score =  123 bits (308), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 61/123 (49%), Positives = 81/123 (65%), Gaps = 9/123 (7%)

Query: 42  LDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNL 100
           ++  F F   N   AE II  YP   +R+A++PLLDLAQRQ+G WLP+ A+  VA+ L +
Sbjct: 1   MNTNFIFDKKNLNLAEEIIKKYPPKGKRSAILPLLDLAQRQNGGWLPVPAIECVANMLEM 60

Query: 101 PKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMM 160
           P MR YEVATFYTMF  KP+G        +YH+  CTTTPCWLR SD I+++ +KK  + 
Sbjct: 61  PYMRAYEVATFYTMFNLKPVG--------KYHIQVCTTTPCWLRGSDHIMKICEKKLGVK 112

Query: 161 LER 163
           L+ 
Sbjct: 113 LKE 115


>gi|145246598|ref|XP_001395548.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus niger CBS
           513.88]
 gi|134080266|emb|CAK97169.1| unnamed protein product [Aspergillus niger]
 gi|350636895|gb|EHA25253.1| hypothetical protein ASPNIDRAFT_56704 [Aspergillus niger ATCC 1015]
          Length = 269

 Score =  123 bits (308), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 63/151 (41%), Positives = 92/151 (60%), Gaps = 10/151 (6%)

Query: 7   KLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVG 66
           +L   + +   R  S   +   D+L VHR+  ++N +V F+FT  N K  + I+  YP  
Sbjct: 15  QLFQQIPKTQFRPFSAGPQRFSDSLAVHRNKGENNPNVPFKFTEQNLKLIDEILKRYPPQ 74

Query: 67  HERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIK 126
           +++AAV+P+LD+ QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R+P+G     
Sbjct: 75  YKKAAVMPVLDVGQRQHGYTSISVMNEVARLLEMPPMRVYEVATFYTMYNREPVG----- 129

Query: 127 SILQYHLNWCTTTPCWLR--NSDAILEVIKK 155
              +Y +  CTTTPC L    SD I++ I +
Sbjct: 130 ---KYFVQLCTTTPCQLGGCGSDKIVKAITE 157


>gi|71001132|ref|XP_755247.1| NADH-ubiquinone dehydrogenase 24 kDa subunit [Aspergillus fumigatus
           Af293]
 gi|66852885|gb|EAL93209.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus
           fumigatus Af293]
 gi|159129331|gb|EDP54445.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus
           fumigatus A1163]
          Length = 268

 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 63/151 (41%), Positives = 89/151 (58%), Gaps = 10/151 (6%)

Query: 7   KLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVG 66
           +L   + +   R  S   +   D L VHR+  ++N  + F+F+  N K  + I+  YP  
Sbjct: 15  QLFHQIPKSQCRPFSAGPQRYSDTLAVHRNKPNNNPSIPFKFSEQNMKLVDEILKRYPPQ 74

Query: 67  HERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIK 126
           +++ AV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R+P+G     
Sbjct: 75  YKKGAVMPLLDLGQRQHGYTSISVMNEVARILEMPPMRVYEVATFYTMYNREPVG----- 129

Query: 127 SILQYHLNWCTTTPCWLR--NSDAILEVIKK 155
              +Y +  CTTTPC L    S  ILE I++
Sbjct: 130 ---KYFVQLCTTTPCQLGGCGSTKILEAIQE 157


>gi|51473547|ref|YP_067304.1| NADH dehydrogenase subunit E [Rickettsia typhi str. Wilmington]
 gi|383752322|ref|YP_005427422.1| NADH dehydrogenase subunit E [Rickettsia typhi str. TH1527]
 gi|383843159|ref|YP_005423662.1| NADH dehydrogenase subunit E [Rickettsia typhi str. B9991CWPP]
 gi|81390153|sp|Q68X20.1|NUOE_RICTY RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|51459859|gb|AAU03822.1| NADH dehydrogenase (ubiquinone) subunit E [Rickettsia typhi str.
           Wilmington]
 gi|380758965|gb|AFE54200.1| NADH dehydrogenase subunit E [Rickettsia typhi str. TH1527]
 gi|380759806|gb|AFE55040.1| NADH dehydrogenase subunit E [Rickettsia typhi str. B9991CWPP]
          Length = 170

 Score =  122 bits (307), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 63/122 (51%), Positives = 80/122 (65%), Gaps = 11/122 (9%)

Query: 36  DTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYV 94
           +TK  N    F F   N   AE II  YP   +R+A++PLLDLAQRQ+G WL ISA+ YV
Sbjct: 2   NTKTTNF--TFAFDKKNLNLAETIIKKYPPNGKRSAILPLLDLAQRQNGGWLHISAIEYV 59

Query: 95  ADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIK 154
           A+ L +P MR YEVATFY+MF   P+G        +YH+  CTTTPCWLR SD I+++ +
Sbjct: 60  ANMLEMPYMRAYEVATFYSMFNLSPVG--------KYHIQVCTTTPCWLRGSDDIMKICE 111

Query: 155 KK 156
           KK
Sbjct: 112 KK 113


>gi|406606458|emb|CCH42232.1| putative NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial [Wickerhamomyces ciferrii]
          Length = 245

 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 80/214 (37%), Positives = 112/214 (52%), Gaps = 42/214 (19%)

Query: 6   AKLASNVVRQNVRSLSTTQRLNH-DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYP 64
           +K+AS  +R  +  +S  +R +H DA  VHR+TKD+N  VKFEF   N +    II+ YP
Sbjct: 14  SKIAS--IRFFMGFISIPKRWSHIDA--VHRNTKDNNPSVKFEFNDKNSQEVTKIIAKYP 69

Query: 65  VGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEER 124
             +++AA++PLL+L Q Q G+  I  M+ VA  L +P MRVYEVA+FYTMF RKP+G   
Sbjct: 70  EQYKKAAIMPLLNLGQHQFGYCSIGVMNEVARILEVPPMRVYEVASFYTMFHRKPVG--- 126

Query: 125 IKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN--------MMLER------------- 163
                Q ++  CT   C LR +D I    K  C           LE              
Sbjct: 127 -----QVNVGICTNIACQLRGADDIYSNAKSYCKSEKNKDGFFSLEELECSGACANAPVA 181

Query: 164 -------QDLEPKDMEQIIDDLKAGKKPAPGPSG 190
                  +DL+   + +++DDL+ G K  PGP G
Sbjct: 182 EINNIYYEDLDKDSIIKVLDDLRIG-KAKPGPFG 214


>gi|121698878|ref|XP_001267836.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus
           clavatus NRRL 1]
 gi|119395978|gb|EAW06410.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus
           clavatus NRRL 1]
          Length = 268

 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 109/221 (49%), Gaps = 51/221 (23%)

Query: 11  NVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERA 70
            + +   R  S   +   D L VHR++  +N  + F+F+  N K  + I+  YP  +++ 
Sbjct: 19  QIPKSQCRPFSAGPQRYSDTLAVHRNSPSNNPSIPFKFSEQNMKLVDEILKRYPPQYKKG 78

Query: 71  AVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQ 130
           AV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R P+G        +
Sbjct: 79  AVMPLLDLGQRQHGYTSISVMNEVARLLEMPPMRVYEVATFYTMYNRDPVG--------K 130

Query: 131 YHLNWCTTTPCWLR--NSDAILEVIKKKCNM------------MLE-------------- 162
           Y +  CTTTPC L    S  ILE I++   +            +LE              
Sbjct: 131 YFVQLCTTTPCQLGGCGSTKILEAIEEHLGITSGHTTEDGLFTLLEVECLGACVNAPMVQ 190

Query: 163 -----RQDLEPKDMEQIIDDLK-------AGKK---PAPGP 188
                 +DL P+ M+ ++  LK       +GK    PAPGP
Sbjct: 191 INDDYYEDLTPESMKSLLTALKESATAAESGKSVKVPAPGP 231


>gi|91205207|ref|YP_537562.1| NADH dehydrogenase subunit E [Rickettsia bellii RML369-C]
 gi|157827455|ref|YP_001496519.1| NADH dehydrogenase subunit E [Rickettsia bellii OSU 85-389]
 gi|122990931|sp|Q1RJJ1.1|NUOE_RICBR RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|91068751|gb|ABE04473.1| NADH dehydrogenase I chain E [Rickettsia bellii RML369-C]
 gi|157802759|gb|ABV79482.1| NADH dehydrogenase subunit E [Rickettsia bellii OSU 85-389]
          Length = 167

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 89/166 (53%), Gaps = 40/166 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F F   N   AE II  YP   +R+A++PLLDLAQRQ+G WLP+ A+ YVA+ L +P MR
Sbjct: 8   FSFDKKNLSLAEDIIKKYPPEGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPYMR 67

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER- 163
            YEVATFYTMF  KP+G+         H+  CTTTPCWLR SD I++  K+K  +  E  
Sbjct: 68  AYEVATFYTMFNLKPVGKN--------HIQVCTTTPCWLRGSDDIMKTCKEKLGIKDEEV 119

Query: 164 ------------------------------QDLEPKDMEQIIDDLK 179
                                         +DL P+ ME IID L+
Sbjct: 120 TKDQKFSLIEIECLGACVNAPVVQINDDYYEDLTPEKMEAIIDKLR 165


>gi|119480765|ref|XP_001260411.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Neosartorya
           fischeri NRRL 181]
 gi|119408565|gb|EAW18514.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Neosartorya
           fischeri NRRL 181]
          Length = 268

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/151 (41%), Positives = 89/151 (58%), Gaps = 10/151 (6%)

Query: 7   KLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVG 66
           +L   + +   R  S   +   D L VHR+  ++N  + F+F+  N K  + I+  YP  
Sbjct: 15  QLFHQIPKPQCRPFSAGPQRYSDTLAVHRNKPNNNPSIPFKFSEQNMKLVDEILKRYPPQ 74

Query: 67  HERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIK 126
           +++ AV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R+P+G     
Sbjct: 75  YKKGAVMPLLDLGQRQHGYTSISVMNEVARILEMPPMRVYEVATFYTMYNREPVG----- 129

Query: 127 SILQYHLNWCTTTPCWLR--NSDAILEVIKK 155
              +Y +  CTTTPC L    S  ILE I++
Sbjct: 130 ---KYFVQLCTTTPCQLGGCGSTKILEAIQE 157


>gi|209964546|ref|YP_002297461.1| NADH-quinone oxidoreductase subunit E [Rhodospirillum centenum SW]
 gi|209958012|gb|ACI98648.1| NADH-quinone oxidoreductase chain E, putative [Rhodospirillum
           centenum SW]
          Length = 210

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 93/175 (53%), Gaps = 40/175 (22%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F FT +N + A  II+ YP G +++AV+PLLDLAQRQ+G WL   A+ YVAD L +P++R
Sbjct: 13  FSFTQENLELARRIIAKYPPGRQQSAVMPLLDLAQRQNGNWLSRPAIEYVADMLEMPRIR 72

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER- 163
             EVA+FYTM+  KP+G        ++ +  CTTTPCWLR SD IL   +KK  +     
Sbjct: 73  AMEVASFYTMYNLKPVG--------KHFVQVCTTTPCWLRGSDDILHTCEKKLGIKAGET 124

Query: 164 ------------------------------QDLEPKDMEQIIDDLKAGKKPAPGP 188
                                         +DL P+ ME I+D L   + P PGP
Sbjct: 125 TADGQFTVVEAECLGACVNAPMVQIGDSYFEDLTPEAMEAILDALARDETPKPGP 179


>gi|302765070|ref|XP_002965956.1| hypothetical protein SELMODRAFT_83866 [Selaginella moellendorffii]
 gi|300166770|gb|EFJ33376.1| hypothetical protein SELMODRAFT_83866 [Selaginella moellendorffii]
          Length = 222

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/123 (47%), Positives = 85/123 (69%), Gaps = 9/123 (7%)

Query: 34  HRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMH 92
           H +++D+N +  FEFT  N  +A+ I+S YP+ ++++AVIPLLDLAQ+QH GWLP+SAM+
Sbjct: 2   HINSQDNNENTPFEFTKANMDKAKEIMSHYPLNYKQSAVIPLLDLAQQQHGGWLPVSAMN 61

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV 152
            +A+ + +P +RVYEVATFY+MF R  +G        +YH+  C TTPC +R S  I   
Sbjct: 62  KIAEIIGVPSIRVYEVATFYSMFNRTKVG--------KYHIQVCGTTPCMIRGSRDIEAA 113

Query: 153 IKK 155
           + K
Sbjct: 114 LLK 116


>gi|229586620|ref|YP_002845121.1| NADH dehydrogenase subunit E [Rickettsia africae ESF-5]
 gi|228021670|gb|ACP53378.1| NADH dehydrogenase I chain E [Rickettsia africae ESF-5]
          Length = 167

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/119 (51%), Positives = 79/119 (66%), Gaps = 9/119 (7%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F F   N   AE II  YP   +R+A++PLLDLAQRQ+G WLP+ A+ YVA+ L +P +R
Sbjct: 8   FTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPYIR 67

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER 163
            YEVATFYTMF  K +G        +YH+  CTTTPCWLR SD I++V +KK  + L+ 
Sbjct: 68  AYEVATFYTMFNLKRVG--------KYHIQVCTTTPCWLRGSDDIMQVCEKKLGVQLKE 118


>gi|94496478|ref|ZP_01303055.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas sp. SKA58]
 gi|94424224|gb|EAT09248.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas sp. SKA58]
          Length = 226

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 93/180 (51%), Gaps = 45/180 (25%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADFL 98
           F +T +N  +AE +I+ YP G +++AV+PLLDLAQRQ        GWLP+  M Y+A  L
Sbjct: 20  FAWTAENAAQAEKVIARYPAGRQQSAVMPLLDLAQRQVGAETQTQGWLPVPVMEYIARQL 79

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK-- 156
           ++P MRVYEVATFYTM+   P+G        +YH+  C TTPC LR SD +    K K  
Sbjct: 80  DMPYMRVYEVATFYTMYNLAPVG--------RYHVQVCGTTPCMLRGSDDVFSACKNKGL 131

Query: 157 ----------------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGP 188
                                  N  + +      +DL    M  I+DDL AGK+P  GP
Sbjct: 132 IKGSTTPDGLFTLTEVECLGACANAPMVQINDDNFEDLTYDSMSAILDDLAAGKQPKIGP 191


>gi|383501850|ref|YP_005415209.1| NADH dehydrogenase subunit E [Rickettsia australis str. Cutlack]
 gi|378932861|gb|AFC71366.1| NADH dehydrogenase subunit E [Rickettsia australis str. Cutlack]
          Length = 167

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 92/166 (55%), Gaps = 40/166 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F F   N   AE II  YP   +R+A++PLLDLAQRQ+G WLP+ A+ YVA+ L +P +R
Sbjct: 8   FTFDKKNLNLAEDIIKKYPPEGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPYIR 67

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER- 163
            YEVATFYTMF  K +G        +YH+  CTTTPCWLR SD I+++ +KK  + L+  
Sbjct: 68  AYEVATFYTMFNLKRVG--------KYHIQVCTTTPCWLRGSDDIMKICEKKLGIKLKET 119

Query: 164 ------------------------------QDLEPKDMEQIIDDLK 179
                                         +DL P+ ME++ID L+
Sbjct: 120 TEDQKFTLSEIECLGACVNAPVLQINDDYYEDLTPEKMEKLIDKLQ 165


>gi|168013098|ref|XP_001759238.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689551|gb|EDQ75922.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 275

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/268 (32%), Positives = 133/268 (49%), Gaps = 65/268 (24%)

Query: 5   LAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYP 64
           LA     + R+ V S++ +      A F H +T D+N D+K++FTP N ++ + ++S YP
Sbjct: 31  LAPFVPQIQRREVPSVNYS-----TATFAHVNTPDNNPDLKWDFTPANMEKVKELLSHYP 85

Query: 65  VGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEE 123
             ++++AVIP+LDLAQ+Q+ GWL + AM+ +A+ ++   +RVYEVATFY+MF R+P+G  
Sbjct: 86  KNYKQSAVIPMLDLAQQQNGGWLSVQAMNRIAEIVDYAPIRVYEVATFYSMFNRQPVG-- 143

Query: 124 RIKSILQYHLNWCTTTPCWLRNS----DAIL--------EVIKKKCNMMLER-------- 163
                 +YHL  C TTPC LR S    DA+L        EV K     + E         
Sbjct: 144 ------KYHLLVCGTTPCMLRGSRDIEDALLKHLHVARNEVTKDGLFSVGEMECMGCCVN 197

Query: 164 ---------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRF 202
                                +DL P+ + +++++LK GKKP           G+Q  + 
Sbjct: 198 APMIVVADYSNGVEGYSYNYYEDLTPERVVELVEELKQGKKPK---------WGTQHPKR 248

Query: 203 CQAREAYHDMTSLTGEPHGPWDSKRDFC 230
                A    T+L  EP  P     D C
Sbjct: 249 INCGPA-GGTTTLLSEPQAPPCRDLDAC 275


>gi|301101551|ref|XP_002899864.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Phytophthora infestans T30-4]
 gi|262102866|gb|EEY60918.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Phytophthora infestans T30-4]
          Length = 271

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/122 (48%), Positives = 83/122 (68%), Gaps = 9/122 (7%)

Query: 34  HRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMH 92
           HRDT+D+N D  F+FTP+N  R  AI+  YP  ++ +A+IPLLDLAQRQH GWLP++AM+
Sbjct: 39  HRDTEDNNADTPFDFTPENYDRVHAILDRYPENYKTSAIIPLLDLAQRQHGGWLPLAAMN 98

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV 152
            VA  ++   ++VYEVATFYTMF R+ +G        +Y +  C TTPC +  S+ I + 
Sbjct: 99  KVARIVDAKPIQVYEVATFYTMFNREKVG--------KYFIQLCGTTPCMICGSEEIKKT 150

Query: 153 IK 154
           I+
Sbjct: 151 IE 152


>gi|225563148|gb|EEH11427.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR]
          Length = 259

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 110/218 (50%), Gaps = 47/218 (21%)

Query: 10  SNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHER 69
           S V  +  R  +    L  D L VHR+T ++N  + F+F+  N K  + I+  YP  +++
Sbjct: 18  SRVPGRQCRPFTVAAPLRSDTLAVHRNTPENNPSIPFKFSEQNLKLIDEILLRYPPQYKK 77

Query: 70  AAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSIL 129
           AAV+P+LDL QRQ+G+  IS M+ VA  L +P MRVYEVATFYTM+ R+P+G        
Sbjct: 78  AAVMPILDLGQRQYGYTSISVMNEVARILEMPPMRVYEVATFYTMYNREPVG-------- 129

Query: 130 QYHLNWCTTTPCWL----------------------RNSDAILEVIKKKC------NMML 161
           +Y +  CTTTPC L                         D +  V++ +C        M+
Sbjct: 130 KYFVQVCTTTPCQLGGCGSAKVMKAVTDHLGVSNGQTTPDKLFTVLEVECLGACVNAPMI 189

Query: 162 E-----RQDLEPKDMEQIIDDLKAGKK------PAPGP 188
           +      +DL P+ +  ++D LK  +       PAPGP
Sbjct: 190 QINDDYYEDLTPESVVSLLDALKEAETNKSVEVPAPGP 227


>gi|190570998|ref|YP_001975356.1| NADH dehydrogenase subunit E [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019517|ref|ZP_03335323.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357270|emb|CAQ54696.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212994939|gb|EEB55581.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|222825034|dbj|BAH22192.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Cadra
           cautella]
          Length = 166

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/112 (51%), Positives = 75/112 (66%), Gaps = 8/112 (7%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR 104
           +F FT DN ++A+  I +YP G E +AV+PLL L Q Q GW+P SAM YVAD L++P +R
Sbjct: 7   QFSFTSDNLRKAKKSIEMYPKGREGSAVMPLLYLVQEQCGWVPESAMRYVADMLHIPHIR 66

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VYEVA FYTM+  KP+G        +Y +  C TTPCWL NS+ +L   KKK
Sbjct: 67  VYEVANFYTMYNLKPVG--------KYLIQICRTTPCWLCNSEEVLNTFKKK 110


>gi|157964433|ref|YP_001499257.1| NADH dehydrogenase subunit E [Rickettsia massiliae MTU5]
 gi|379713998|ref|YP_005302336.1| NADH dehydrogenase subunit E [Rickettsia massiliae str. AZT80]
 gi|157844209|gb|ABV84710.1| NADH dehydrogenase I chain E [Rickettsia massiliae MTU5]
 gi|376334644|gb|AFB31876.1| NADH dehydrogenase subunit E [Rickettsia massiliae str. AZT80]
          Length = 167

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/119 (50%), Positives = 79/119 (66%), Gaps = 9/119 (7%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F F   N   AE II  YP   +R+A++PLLDLAQRQ+G WLP+ A+ YVA+ L +P +R
Sbjct: 8   FTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPYIR 67

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER 163
            YEVATFYTMF  K +G        +YH+  CTTTPCWLR SD I+++ +KK  + L+ 
Sbjct: 68  AYEVATFYTMFNLKQVG--------KYHIQVCTTTPCWLRGSDDIMKICEKKLGVKLKE 118


>gi|168027742|ref|XP_001766388.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682297|gb|EDQ68716.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 243

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/145 (43%), Positives = 93/145 (64%), Gaps = 9/145 (6%)

Query: 16  NVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPL 75
           + RS   T  +    L  H +T D+N D+K++FTP N ++ + ++S YP  ++++AVIPL
Sbjct: 5   SARSSHFTLIIYESDLSSHVNTPDNNPDLKWDFTPANMEKVKELLSHYPKNYKQSAVIPL 64

Query: 76  LDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLN 134
           LDLAQ+Q  GWLP+ AM+ +A+ +    +RVYEVATFY+MF R+P+G        +YHL 
Sbjct: 65  LDLAQQQQGGWLPVQAMNRIAEIVGYAPIRVYEVATFYSMFNRQPVG--------RYHLL 116

Query: 135 WCTTTPCWLRNSDAILEVIKKKCNM 159
            C TTPC LR S  I + + K  N+
Sbjct: 117 VCGTTPCMLRGSREIEDALLKHLNV 141


>gi|383481412|ref|YP_005390327.1| NADH dehydrogenase subunit E [Rickettsia rhipicephali str.
           3-7-female6-CWPP]
 gi|378933751|gb|AFC72254.1| NADH dehydrogenase subunit E [Rickettsia rhipicephali str.
           3-7-female6-CWPP]
          Length = 167

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/119 (50%), Positives = 79/119 (66%), Gaps = 9/119 (7%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F F   N   AE II  YP   +R+A++PLLDLAQRQ+G WLP+ A+ YVA+ L +P +R
Sbjct: 8   FTFNKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPYIR 67

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER 163
            YEVATFYTMF  K +G        +YH+  CTTTPCWLR SD I+++ +KK  + L+ 
Sbjct: 68  AYEVATFYTMFNLKRVG--------KYHIQVCTTTPCWLRGSDDIMKICEKKLGVKLKE 118


>gi|169783796|ref|XP_001826360.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus oryzae RIB40]
 gi|238493623|ref|XP_002378048.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus
           flavus NRRL3357]
 gi|83775104|dbj|BAE65227.1| unnamed protein product [Aspergillus oryzae RIB40]
 gi|220696542|gb|EED52884.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus
           flavus NRRL3357]
          Length = 270

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/218 (35%), Positives = 109/218 (50%), Gaps = 51/218 (23%)

Query: 14  RQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVI 73
           +   R  S   +   D+L VHR+   +N  + F F   N++  + I+  YP  +++AAV+
Sbjct: 22  KTQCRPFSAGPQRCSDSLSVHRNKPTNNPSIPFTFNEQNQRLIDEILKRYPPQYKKAAVM 81

Query: 74  PLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHL 133
           PLLDL QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R+P+G        +Y +
Sbjct: 82  PLLDLGQRQHGFTSISVMNEVARLLEMPPMRVYEVATFYTMYNREPVG--------KYFV 133

Query: 134 NWCTTTPCWLR--NSDAILEVIKKKCNM------------MLE----------------- 162
             CTTTPC L    S  ILE I++   +            +LE                 
Sbjct: 134 QLCTTTPCQLGGCGSTKILEAIQEHLGITPGHTTEDGLFTLLEVECLGACVNAPMVQIND 193

Query: 163 --RQDLEPKDMEQIIDDLK-------AGKK---PAPGP 188
              +DL P+ M+ ++  LK       AGK    PAPGP
Sbjct: 194 DYYEDLTPESMKTLLTALKESATATDAGKTVQIPAPGP 231


>gi|240275732|gb|EER39245.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces
           capsulatus H143]
 gi|325093104|gb|EGC46414.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H88]
          Length = 259

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 111/218 (50%), Gaps = 47/218 (21%)

Query: 10  SNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHER 69
           S ++ +  R  +    L  D L VHR+T ++N  + F+F+  N K  + I+  YP  +++
Sbjct: 18  SRLLGRQCRPFTVAAPLRSDTLAVHRNTPENNPSIPFKFSEQNLKLIDEILLRYPPQYKK 77

Query: 70  AAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSIL 129
           AAV+P+LDL QRQ+G+  IS M+ VA  L +P MRVYEVATFYTM+ R+P+G        
Sbjct: 78  AAVMPILDLGQRQYGYTSISVMNEVARILEMPPMRVYEVATFYTMYNREPVG-------- 129

Query: 130 QYHLNWCTTTPCWLRNS----------------------DAILEVIKKKC------NMML 161
           +Y +  CTTTPC L                         D +  V++ +C        M+
Sbjct: 130 KYFVQVCTTTPCQLGGCGSAKVMKAVTDHLGVSNGQTTLDKLFTVLEVECLGACVNAPMI 189

Query: 162 E-----RQDLEPKDMEQIIDDLKAGKK------PAPGP 188
           +      +DL P+ +  ++D LK  +       PAPGP
Sbjct: 190 QINDDYYEDLTPESVVSLLDALKEAETNKSVEVPAPGP 227


>gi|391869396|gb|EIT78594.1| ubiquinone oxidoreductase, NDUFV2/24 kD subunit [Aspergillus oryzae
           3.042]
          Length = 270

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/218 (35%), Positives = 109/218 (50%), Gaps = 51/218 (23%)

Query: 14  RQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVI 73
           +   R  S   +   D+L VHR+   +N  + F F   N++  + I+  YP  +++AAV+
Sbjct: 22  KTQCRPFSAGPQRCSDSLSVHRNKPTNNPSIPFTFNEQNQRLIDEILKRYPPQYKKAAVM 81

Query: 74  PLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHL 133
           PLLDL QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R+P+G        +Y +
Sbjct: 82  PLLDLGQRQHGFTSISVMNEVARLLEMPPMRVYEVATFYTMYNREPVG--------KYFV 133

Query: 134 NWCTTTPCWLR--NSDAILEVIKKKCNM------------MLE----------------- 162
             CTTTPC L    S  ILE I++   +            +LE                 
Sbjct: 134 QLCTTTPCQLGGCGSTKILEAIQEHLGITPGHTTEDGLFTLLEVECLGACVNAPMVQIND 193

Query: 163 --RQDLEPKDMEQIIDDLK-------AGKK---PAPGP 188
              +DL P+ M+ ++  LK       AGK    PAPGP
Sbjct: 194 DYYEDLTPESMKTLLTALKESATATDAGKTVQIPAPGP 231


>gi|383483824|ref|YP_005392737.1| NADH dehydrogenase subunit E [Rickettsia parkeri str. Portsmouth]
 gi|378936178|gb|AFC74678.1| NADH dehydrogenase subunit E [Rickettsia parkeri str. Portsmouth]
          Length = 167

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/119 (50%), Positives = 80/119 (67%), Gaps = 9/119 (7%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F F   N   AE II  YP   +R+A++PLLDLAQRQ+G WLP+ A+ YVA+ L +P +R
Sbjct: 8   FTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPYIR 67

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER 163
            YEVATFYTMF  K +G        +YH+  CTTTPCWLR SD I+++ +KK ++ L+ 
Sbjct: 68  AYEVATFYTMFNLKRVG--------KYHIQVCTTTPCWLRGSDDIMKICEKKLSVQLKE 118


>gi|294011312|ref|YP_003544772.1| NADH dehydrogenase I chain E [Sphingobium japonicum UT26S]
 gi|390167267|ref|ZP_10219262.1| NADH dehydrogenase I chain E [Sphingobium indicum B90A]
 gi|292674642|dbj|BAI96160.1| NADH dehydrogenase I chain E [Sphingobium japonicum UT26S]
 gi|389590116|gb|EIM68119.1| NADH dehydrogenase I chain E [Sphingobium indicum B90A]
          Length = 222

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 93/180 (51%), Gaps = 45/180 (25%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADFL 98
           F +T +N ++A+ +I+ YP G +++AV+PLLDLAQRQ        GWLP+  M Y+AD L
Sbjct: 20  FAWTAENAEQAKKVIARYPAGRQQSAVMPLLDLAQRQVGAETQTQGWLPVPVMEYIADQL 79

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK-- 156
            +P MRVYEVATFYTM+   P+G        +YH+  C TTPC LR SD +    K K  
Sbjct: 80  EMPYMRVYEVATFYTMYNLAPVG--------RYHVQVCGTTPCMLRGSDDVFSACKNKGL 131

Query: 157 ----------------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGP 188
                                  N  + +      +DL    M  I+DDL  GK+P  GP
Sbjct: 132 VKGGTTPDGLFTLTEVECLGACANAPMVQINDDNFEDLTYDSMSAILDDLAVGKQPRIGP 191


>gi|328870604|gb|EGG18977.1| NADH dehydrogenase [Dictyostelium fasciculatum]
          Length = 249

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 116/237 (48%), Gaps = 50/237 (21%)

Query: 10  SNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHER 69
           S ++    RS  ++  L  DAL  H DT D+N    F+FT +N K+ + IIS YP  + +
Sbjct: 18  SLIIATGKRSFQSSAILRSDALSRHIDTDDNNDHTPFDFTEENMKKVDTIISKYPPKYRQ 77

Query: 70  AAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSI 128
           +A+IPLLDLAQRQ+ GW+ + AM  VA+ + +  M  YEVA+FYTMF R  IG+  ++  
Sbjct: 78  SAMIPLLDLAQRQNGGWISLKAMDKVAEIIGVAPMVAYEVASFYTMFNRTKIGKNFVQ-- 135

Query: 129 LQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER------------------------- 163
                  CTTTPC LR S  IL   K   N+ +                           
Sbjct: 136 ------VCTTTPCMLRGSTDILNACKHHLNINVGETTKDEKFTLVEVECLGACVNAPMIC 189

Query: 164 ------QDLEPKDMEQIIDDL------KAG----KKPAPGPSGYTSGIGSQSGRFCQ 204
                 +DL P+ M+ ++  +      K G    +K A GP G T+ + + +G  C+
Sbjct: 190 INDDYYEDLTPETMKNLLTQIEKSEPTKVGPQNHRKAAEGPQGKTTLLEAPTGPICR 246


>gi|149184633|ref|ZP_01862951.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit
           [Erythrobacter sp. SD-21]
 gi|148831953|gb|EDL50386.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit
           [Erythrobacter sp. SD-21]
          Length = 223

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 107/206 (51%), Gaps = 48/206 (23%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADFL 98
           FEFT   + +A+  I+ YP G +R+AV+PLLDLAQRQ        GWLP+  + YVAD+L
Sbjct: 20  FEFTESYRAKADKAIARYPEGRQRSAVMPLLDLAQRQVGEETDTQGWLPLPVIEYVADYL 79

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK-- 156
           ++P +RV EVA+FY M+   P+G        +YH+  C TTPC LR SD + E  KK+  
Sbjct: 80  DMPVIRVLEVASFYFMYNMVPVG--------KYHVQVCGTTPCMLRGSDGLFETCKKRGM 131

Query: 157 ---------------------CNM--MLE-----RQDLEPKDMEQIIDDLKAGKKPAPG- 187
                                C    M++      +DL P+ +++I+D+L AGK+P  G 
Sbjct: 132 KKGHVSDDGLWTLTEVECMGNCATAPMVQINDDNYEDLTPERLDEILDELAAGKQPKSGT 191

Query: 188 --PSGYTSGIGSQSGRFCQAREAYHD 211
             P  +TS          +  +A HD
Sbjct: 192 QEPGRHTSEPAGGPTTLKEMVDANHD 217


>gi|329850725|ref|ZP_08265570.1| NADH-quinone oxidoreductase chain 2 [Asticcacaulis biprosthecum
           C19]
 gi|328841040|gb|EGF90611.1| NADH-quinone oxidoreductase chain 2 [Asticcacaulis biprosthecum
           C19]
          Length = 218

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/173 (38%), Positives = 93/173 (53%), Gaps = 37/173 (21%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F F+P+  ++A   I+ YP    ++AVIP+L L Q+Q GW+   A+  +A  L +P++RV
Sbjct: 14  FAFSPETMEKANWWIAKYPENRRQSAVIPILWLVQKQEGWVSEPAISAIARLLGMPQIRV 73

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
           YEVATFYTMF+ +P+G   +  +       C TTPC LR SDA++ V K K         
Sbjct: 74  YEVATFYTMFMLEPVGSAALIQV-------CGTTPCMLRGSDALMAVCKAKIGPKDKLSA 126

Query: 157 ---------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGP 188
                          CN  + +      +DL  ++M QIIDD  AGK PAPGP
Sbjct: 127 DGLFTWQEVECLGACCNAPMAQINDYFYEDLTAENMVQIIDDFAAGKTPAPGP 179


>gi|238651038|ref|YP_002916895.1| NADH dehydrogenase subunit E [Rickettsia peacockii str. Rustic]
 gi|238625136|gb|ACR47842.1| NADH dehydrogenase subunit E [Rickettsia peacockii str. Rustic]
          Length = 167

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/119 (50%), Positives = 79/119 (66%), Gaps = 9/119 (7%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F F   N   AE II  YP   +R+A++PLLDLAQRQ+G WLP+ A+ YVA+ L +P +R
Sbjct: 8   FTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPYIR 67

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER 163
            YEVATFYTMF  K +G        +YH+  CTTTPCWLR SD I+++ +KK  + L+ 
Sbjct: 68  AYEVATFYTMFNLKRVG--------KYHIQVCTTTPCWLRGSDDIMKICEKKLGVTLKE 118


>gi|255941184|ref|XP_002561361.1| Pc16g10510 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585984|emb|CAP93721.1| Pc16g10510 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 268

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 114/223 (51%), Gaps = 49/223 (21%)

Query: 7   KLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVG 66
           +L   + +   R+ S   +   D L VHR+  ++N  + F+F+  N K A+ I+  YP  
Sbjct: 14  QLVHQLPKPQYRAFSAGSQRFSDLLSVHRNKVNNNPSLPFKFSEQNLKLADEILKRYPPQ 73

Query: 67  HERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIK 126
           +++AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R P+G     
Sbjct: 74  YKKAAVMPLLDLGQRQHGFTSISVMNEVARMLEMPPMRVYEVATFYTMYNRDPVG----- 128

Query: 127 SILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNM------------------------- 159
              +Y +  CTTTPC L    S AI++ I +   +                         
Sbjct: 129 ---KYFVQICTTTPCQLGGCGSTAIVKAITEHLGITPGHTTEDGLFTFTEVECLGACVNA 185

Query: 160 -MLE-----RQDLEPKDMEQIIDDLK-------AGKK-PAPGP 188
            M++      +DL P+ ++ I+  LK       AG K PAPGP
Sbjct: 186 PMVQINDDYYEDLTPESIKTILTALKDSATATGAGAKIPAPGP 228


>gi|383312427|ref|YP_005365228.1| NADH dehydrogenase subunit E [Candidatus Rickettsia amblyommii str.
           GAT-30V]
 gi|378931087|gb|AFC69596.1| NADH dehydrogenase subunit E [Candidatus Rickettsia amblyommii str.
           GAT-30V]
          Length = 167

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/119 (50%), Positives = 80/119 (67%), Gaps = 9/119 (7%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F F   N   AE II  YP   +R+A++PLLDLAQRQ+G WLP+ A+ YVA+ L +P +R
Sbjct: 8   FTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPYIR 67

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER 163
           VYEVATFYTMF  K +G        +YH+  CTTTPCWLR S+ I+++ +KK  + L+ 
Sbjct: 68  VYEVATFYTMFNLKRVG--------KYHIQVCTTTPCWLRGSNDIMKICEKKLGVKLKE 118


>gi|407781578|ref|ZP_11128796.1| NADH-quinone oxidoreductase, subunit E [Oceanibaculum indicum P24]
 gi|407207795|gb|EKE77726.1| NADH-quinone oxidoreductase, subunit E [Oceanibaculum indicum P24]
          Length = 221

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/116 (49%), Positives = 76/116 (65%), Gaps = 9/116 (7%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKM 103
            F FT +N  + + II+ YP G + +AV+PLLDLAQRQH  W+P +AM ++A+ L +  M
Sbjct: 14  SFSFTKENMAQVKKIIAKYPEGRQLSAVLPLLDLAQRQHDNWVPQAAMEHIAEILGVAPM 73

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           RV EVATFYTMF   P+G         YHL  CTTTPCWLR SD ++E  ++K  +
Sbjct: 74  RVMEVATFYTMFHLVPVG--------TYHLQLCTTTPCWLRGSDDVVETCRRKLGI 121


>gi|15892404|ref|NP_360118.1| NADH dehydrogenase subunit E [Rickettsia conorii str. Malish 7]
 gi|20139044|sp|Q92ID9.1|NUOE_RICCN RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|15619555|gb|AAL03019.1| NADH dehydrogenase I chain E [Rickettsia conorii str. Malish 7]
          Length = 167

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/119 (50%), Positives = 79/119 (66%), Gaps = 9/119 (7%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F F   N   AE II  YP   +R+A++PLLDLAQRQ+G WLP+ A+ YVA+ L +P +R
Sbjct: 8   FTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPYIR 67

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER 163
            YEVATFYTMF  K +G        +YH+  CTTTPCWLR SD I+++ +KK  + L+ 
Sbjct: 68  AYEVATFYTMFNLKRVG--------KYHIQVCTTTPCWLRGSDDIMKICEKKLGVKLKE 118


>gi|341583711|ref|YP_004764202.1| NADH dehydrogenase subunit E [Rickettsia heilongjiangensis 054]
 gi|350273421|ref|YP_004884734.1| NADH dehydrogenase subunit E [Rickettsia japonica YH]
 gi|340807937|gb|AEK74525.1| NADH dehydrogenase subunit E [Rickettsia heilongjiangensis 054]
 gi|348592634|dbj|BAK96595.1| NADH dehydrogenase subunit E [Rickettsia japonica YH]
          Length = 167

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/119 (50%), Positives = 79/119 (66%), Gaps = 9/119 (7%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F F   N   AE II  YP   +R+A++PLLDLAQRQ+G WLP+ A+ YVA+ L +P +R
Sbjct: 8   FTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPYIR 67

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER 163
            YEVATFYTMF  K +G        +YH+  CTTTPCWLR SD I+++ +KK  + L+ 
Sbjct: 68  AYEVATFYTMFNLKRVG--------KYHIQVCTTTPCWLRGSDDIMKICEKKLGVKLKE 118


>gi|374319186|ref|YP_005065685.1| NADH dehydrogenase I subunit E [Rickettsia slovaca 13-B]
 gi|383751132|ref|YP_005426233.1| NADH dehydrogenase subunit E [Rickettsia slovaca str. D-CWPP]
 gi|360041735|gb|AEV92117.1| NADH dehydrogenase I chain E [Rickettsia slovaca 13-B]
 gi|379774146|gb|AFD19502.1| NADH dehydrogenase subunit E [Rickettsia slovaca str. D-CWPP]
          Length = 167

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/119 (50%), Positives = 79/119 (66%), Gaps = 9/119 (7%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F F   N   AE II  YP   +R+A++PLLDLAQRQ+G WLP+ A+ YVA+ L +P +R
Sbjct: 8   FTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPYIR 67

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER 163
            YEVATFYTMF  K +G        +YH+  CTTTPCWLR SD I+++ +KK  + L+ 
Sbjct: 68  AYEVATFYTMFNLKRVG--------KYHIQVCTTTPCWLRGSDDIMKICEKKLGVKLKE 118


>gi|427428436|ref|ZP_18918477.1| NADH-ubiquinone oxidoreductase chain E [Caenispirillum salinarum
           AK4]
 gi|425882169|gb|EKV30851.1| NADH-ubiquinone oxidoreductase chain E [Caenispirillum salinarum
           AK4]
          Length = 206

 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 100/208 (48%), Gaps = 50/208 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FT +   RA+AII+ YP G +R+A +PLLDLAQRQ GW+  +AM  +A+ L++P MRV
Sbjct: 14  FAFTDEMMDRAKAIIAKYPEGRQRSATLPLLDLAQRQEGWVSKAAMDTIAEMLDVPPMRV 73

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER-- 163
           YEVATFYTM+  KP+G        ++H+  CT   C LR SD I+        + +    
Sbjct: 74  YEVATFYTMYKLKPVG--------KHHIEVCTNVACMLRGSDEIVGACSDHLGIHVGETT 125

Query: 164 -----------------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                                        +DL+   M+ IID LK G+ P P        
Sbjct: 126 EDGQFSLAEAECLGACVNAPMIQIGDHYYEDLDKDSMKAIIDTLKRGESPKP-------- 177

Query: 195 IGSQSGRFCQAREAYHDMTSLTGEPHGP 222
            GSQ GR  Q       +TSL  E   P
Sbjct: 178 -GSQIGR--QTSAPAGGLTSLNTEGFKP 202


>gi|154281553|ref|XP_001541589.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Ajellomyces capsulatus NAm1]
 gi|150411768|gb|EDN07156.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Ajellomyces capsulatus NAm1]
          Length = 259

 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 106/210 (50%), Gaps = 47/210 (22%)

Query: 18  RSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLD 77
           R  +    L  D L VHR+T ++N  + F+F+  N K  + I+  YP  +++AAV+P+LD
Sbjct: 26  RPFTVAAPLRSDTLAVHRNTPENNPGIPFKFSEQNLKLIDEILLRYPPQYKKAAVMPILD 85

Query: 78  LAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCT 137
           L QRQ+G+  IS M+ VA  L +P MRVYEVATFYTM+ R P+G        +Y +  CT
Sbjct: 86  LGQRQYGYTSISVMNEVARILEMPPMRVYEVATFYTMYNRDPVG--------KYFVQVCT 137

Query: 138 TTPCWL----------------------RNSDAILEVIKKKC------NMMLE-----RQ 164
           TTPC L                         D +  V++ +C        M++      +
Sbjct: 138 TTPCQLGGCGSAKVMKAVTDHLGVSNGQTTPDKLFTVLEVECLGACVNAPMIQINDDYYE 197

Query: 165 DLEPKDMEQIIDDLKAGKK------PAPGP 188
           DL P+ +  ++D LK  +       PAPGP
Sbjct: 198 DLTPESVVSLLDALKGAETDKSVEVPAPGP 227


>gi|297814049|ref|XP_002874908.1| hypothetical protein ARALYDRAFT_490304 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297320745|gb|EFH51167.1| hypothetical protein ARALYDRAFT_490304 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 255

 Score =  119 bits (299), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 92/151 (60%), Gaps = 10/151 (6%)

Query: 1   MLSNLAKLASNVVRQNVRS-LSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAI 59
           ML+ LA      +RQ  R   S   R    AL  H D+ D+  D+ +EF+  N+ + + I
Sbjct: 1   MLARLAAKRLLEIRQVFRQPTSQVSRSLSTALNYHLDSPDNKPDLPWEFSEANQSKVKEI 60

Query: 60  ISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118
           +S YP  ++++AVIPLLDLAQ+QH GWLP+SAM+ VA  + +  +RVYEVATFY+MF R 
Sbjct: 61  LSYYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNAVAKVIEVAPIRVYEVATFYSMFNRA 120

Query: 119 PIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
            +G        +YHL  C TTPC +R S  I
Sbjct: 121 KVG--------KYHLLVCGTTPCMIRGSRDI 143


>gi|159480876|ref|XP_001698508.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Chlamydomonas
           reinhardtii]
 gi|34328782|gb|AAQ63695.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Chlamydomonas
           reinhardtii]
 gi|158282248|gb|EDP08001.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Chlamydomonas
           reinhardtii]
          Length = 282

 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 123/266 (46%), Gaps = 72/266 (27%)

Query: 8   LASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGH 67
           L S + R N  + ST      D   +H+DT ++N    FEF+    K    II+ YP  +
Sbjct: 31  LGSLLQRCNFATNST------DIFNIHKDTPENNAATSFEFSEATLKVVNDIIARYPPNY 84

Query: 68  ERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIK 126
           +++A+IP+LD+ Q+++G WL ++AM+ VA  L++  +RVYEVATFYTMF R  IG     
Sbjct: 85  KQSAIIPVLDVTQQENGGWLSLAAMNRVAKLLDMAPIRVYEVATFYTMFNRTKIG----- 139

Query: 127 SILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------- 163
              +YH+  C TTPC L+ S  I E I K   + + +                       
Sbjct: 140 ---KYHVQICGTTPCRLQGSQKIEEAITKHLGIGIGQTTQDGLFTLGEMECMGACVNAPM 196

Query: 164 ------------------QDLEPKDMEQIIDDLKAGKKPAPG--------PSGYTSGIGS 197
                             +DL PKD+  I+D +K G KP PG        P+G   G   
Sbjct: 197 VAIADYTKGVSGFEYIYYEDLTPKDIVNILDTIKKGGKPKPGSQYRLKAEPAGAVHG--- 253

Query: 198 QSGRFCQAREAYHDMTSLTGEPHGPW 223
             G     ++     T+LTG P  P+
Sbjct: 254 --GEKWVPKDG---ETTLTGAPRAPY 274


>gi|198465895|ref|XP_001353809.2| GA19629 [Drosophila pseudoobscura pseudoobscura]
 gi|198150361|gb|EAL29544.2| GA19629 [Drosophila pseudoobscura pseudoobscura]
          Length = 245

 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/186 (38%), Positives = 95/186 (51%), Gaps = 48/186 (25%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
           +KFEFT +NK R E++++ YP    + A++PLLD+AQRQHGWLPISA+  VA+ L +  M
Sbjct: 42  MKFEFTKENKARVESLLTWYPEAERQGALLPLLDIAQRQHGWLPISAVVAVAEVLKIDPM 101

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLE- 162
           + YE A +YTMF  KP G         Y +  CT+TPC+LR SD +L    K C+ ML  
Sbjct: 102 QAYETAKYYTMFHMKPRG--------MYVVAVCTSTPCFLRGSDDLL----KACSKMLRL 149

Query: 163 ----------------------------------RQDLEPKDMEQIIDDLKAGKKPAPGP 188
                                              +DL    +E I+ DLK GK P  GP
Sbjct: 150 EPGETSKDMQFSLKVDCCLGACVNGPVVTINDDLYEDLTEVSLESILSDLKCGKVPPAGP 209

Query: 189 -SGYTS 193
            SG  S
Sbjct: 210 YSGRCS 215


>gi|116792560|gb|ABK26414.1| unknown [Picea sitchensis]
          Length = 253

 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/141 (48%), Positives = 89/141 (63%), Gaps = 16/141 (11%)

Query: 16  NVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPL 75
            VR  ST       AL  H D+ D+N +V +EFT  NK+R + II+ YP  ++++AVI L
Sbjct: 22  GVRHFST-------ALNYHLDSPDNNPNVPWEFTEANKERVKEIITHYPSNYKQSAVITL 74

Query: 76  LDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLN 134
           LDLAQ+QH GWLP+SAM+ VA+ L +  +RV+EVATFYTMF R  +G        +YHL 
Sbjct: 75  LDLAQQQHGGWLPVSAMNKVAEVLEMAPIRVFEVATFYTMFNRTKVG--------KYHLL 126

Query: 135 WCTTTPCWLRNSDAILEVIKK 155
            C TTPC +R S  I   I K
Sbjct: 127 VCGTTPCMIRGSCDIEGAILK 147


>gi|330814432|ref|XP_003291395.1| NADH dehydrogenase [Dictyostelium purpureum]
 gi|325078420|gb|EGC32072.1| NADH dehydrogenase [Dictyostelium purpureum]
          Length = 244

 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 127/259 (49%), Gaps = 58/259 (22%)

Query: 1   MLSNLAKLA-----SNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKR 55
           M+S+L K A     +N+ ++N     ++  +  DAL  H +T+D+N    F+F  +N K+
Sbjct: 1   MISSLIKRANLNTTTNIFKRNY--FKSSSFVKSDALSRHIETEDNNDHTPFDFNQENLKK 58

Query: 56  AEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTM 114
           AE I++ YP  + ++A+IPLLDLAQRQ+ GW+ + AM  VA    +P M  YEVA+FYTM
Sbjct: 59  AEKILAKYPKQYRQSALIPLLDLAQRQNGGWISLKAMDKVAHICGIPPMTAYEVASFYTM 118

Query: 115 FIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------- 163
           F R  +G        Q  +  CTTTPC LR S+ I++  +    + +             
Sbjct: 119 FNRTKVG--------QNFVQVCTTTPCMLRGSEEIVKACRSNLGIEVGETTADNKFTLVE 170

Query: 164 --------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFC 203
                               +DL P+   ++++ +K  +         T+ IG Q+ R  
Sbjct: 171 VECLGACVNAPMLCVNDDFYEDLTPESTNKLLNQIKNNE---------TTKIGPQTHR-- 219

Query: 204 QAREAYHDMTSLTGEPHGP 222
           +A E  H  T+L   P GP
Sbjct: 220 KAAEGPHGKTTLLEPPTGP 238


>gi|294083715|ref|YP_003550472.1| NADH dehydrogenase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663287|gb|ADE38388.1| NADH dehydrogenase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 215

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 76/112 (67%), Gaps = 9/112 (8%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMR 104
           F FT +N+   + II+ YP G + +AV+PLLD+AQRQH  W+P+ A+  +AD L++ K+R
Sbjct: 15  FAFTAENEAEIKRIIAKYPKGRQASAVMPLLDMAQRQHENWIPMKAIELIADKLDMAKIR 74

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           V EVATFYTMF  KP+G        +Y L  CTTTPCWLR SD ++  IK +
Sbjct: 75  VLEVATFYTMFNLKPVG--------KYFLQACTTTPCWLRGSDEMMRCIKDR 118


>gi|381200918|ref|ZP_09908050.1| NADH dehydrogenase I chain E [Sphingobium yanoikuyae XLDN2-5]
 gi|398386449|ref|ZP_10544450.1| NADH-quinone oxidoreductase, E subunit [Sphingobium sp. AP49]
 gi|427411292|ref|ZP_18901494.1| NADH-quinone oxidoreductase, E subunit [Sphingobium yanoikuyae ATCC
           51230]
 gi|397718232|gb|EJK78824.1| NADH-quinone oxidoreductase, E subunit [Sphingobium sp. AP49]
 gi|425710477|gb|EKU73499.1| NADH-quinone oxidoreductase, E subunit [Sphingobium yanoikuyae ATCC
           51230]
          Length = 227

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/118 (47%), Positives = 77/118 (65%), Gaps = 15/118 (12%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADFL 98
           FE+TP+N ++A+ +I+ YP G +++AV+PLLDLAQRQ       +GWLP+  M Y+   L
Sbjct: 20  FEWTPENAEQAKKVIARYPAGRQQSAVMPLLDLAQRQVGAETQTNGWLPVPVMEYIGRQL 79

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           ++P MRVYEVATFYTM+   P+G        +YH+  C TTPC LR SD +    K K
Sbjct: 80  DMPYMRVYEVATFYTMYNLAPVG--------RYHVQVCGTTPCMLRGSDDVFAACKNK 129


>gi|383483258|ref|YP_005392172.1| NADH dehydrogenase subunit E [Rickettsia montanensis str. OSU
           85-930]
 gi|378935612|gb|AFC74113.1| NADH dehydrogenase subunit E [Rickettsia montanensis str. OSU
           85-930]
          Length = 167

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/117 (50%), Positives = 77/117 (65%), Gaps = 9/117 (7%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F F   N   AE II  YP   +R+A++PLLDLAQRQ+G WLP+ A+ YVA+ L +P +R
Sbjct: 8   FTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPYIR 67

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMML 161
            YE ATFYTMF  K +G        +YH+  CTTTPCWLR SD I+++ +KK  + L
Sbjct: 68  AYEAATFYTMFNLKRVG--------KYHIQVCTTTPCWLRGSDDIMKICEKKLGVKL 116


>gi|67458955|ref|YP_246579.1| NADH dehydrogenase subunit E [Rickettsia felis URRWXCal2]
 gi|75536607|sp|Q4UM09.1|NUOE_RICFE RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|67004488|gb|AAY61414.1| NADH dehydrogenase I chain E [Rickettsia felis URRWXCal2]
          Length = 167

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/123 (47%), Positives = 79/123 (64%), Gaps = 9/123 (7%)

Query: 42  LDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNL 100
           +   F F   N   AE II  YP   +R+A++PLLDLAQRQ+G WLP+ A+ YVA+ L +
Sbjct: 1   MSTNFTFDKKNLNLAEDIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEM 60

Query: 101 PKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMM 160
           P MR YEVATFY+MF  K +G        +YH+  CTTTPCWL  SD I+++ +KK  + 
Sbjct: 61  PYMRAYEVATFYSMFNLKRVG--------KYHIQVCTTTPCWLHGSDDIMKICEKKLGIK 112

Query: 161 LER 163
           L+ 
Sbjct: 113 LKE 115


>gi|299117241|emb|CBN75203.1| NUOE homolog, NADH dehydrogenase (ubiquinone) subunit [Ectocarpus
           siliculosus]
          Length = 278

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 113/224 (50%), Gaps = 46/224 (20%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPIS 89
           L  H+DT D+N    F+FT +N  R E I++ YP  + +A++IPLLDLAQRQH GWLP++
Sbjct: 46  LGQHKDTPDNNETTFFDFTDENYARVEKIMAKYPANYRQASIIPLLDLAQRQHGGWLPLA 105

Query: 90  AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           AM  VA  +   +M+VYEVATFYTMF R    E+R K  +Q     C TTPC +  S+ I
Sbjct: 106 AMEKVAKIVGQHEMKVYEVATFYTMFNR----EKRGKHFIQ----LCGTTPCMVCGSEDI 157

Query: 150 LEVIKKKCNM--------------------------MLERQD-----LEPKDMEQIIDDL 178
            + I  +  +                          M++  D     L P+ M+++++  
Sbjct: 158 KKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLEKC 217

Query: 179 KAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           K G+ P  G  G     G  S   C   E  H  TSL G P GP
Sbjct: 218 KNGETPEMGRWGSLPLNGQVS---C---EGPHGKTSLEGTPTGP 255


>gi|195375871|ref|XP_002046722.1| GJ13038 [Drosophila virilis]
 gi|194153880|gb|EDW69064.1| GJ13038 [Drosophila virilis]
          Length = 247

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/206 (37%), Positives = 104/206 (50%), Gaps = 50/206 (24%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
           +KFEFT +NK R + ++  YP    R A++PLLDLAQRQHGWLPI+A+  VA+ L L   
Sbjct: 42  LKFEFTEENKCRVKELLGSYPEKELRGALLPLLDLAQRQHGWLPITAIQAVAEVLKLEPF 101

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMM--- 160
            V+EVA FYTMF  +PIG+ R+K         C TTPC LR    +L + +K  ++    
Sbjct: 102 AVWEVANFYTMFNMRPIGKYRVKV--------CMTTPCQLRGCADVLRICEKTLDLKDGE 153

Query: 161 ----LE------------------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYT 192
               +E                         +DL   + E+I+ +LK GK P PGP    
Sbjct: 154 TSKDMEFTLNTTYCMGACVNGPVMSVNDDLYEDLNVDETEKILCELKDGKLPPPGP---- 209

Query: 193 SGIGSQSGRFCQAREAYHDMTSLTGE 218
                +SGRF  A E     TSL  E
Sbjct: 210 -----RSGRF--ASEPITGPTSLLME 228


>gi|189211391|ref|XP_001942026.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187978119|gb|EDU44745.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 284

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 87/149 (58%), Gaps = 18/149 (12%)

Query: 1   MLSNLAKLASNVVRQNVR----------SLSTTQRLNHDALFVHRDTKDDNLDVKFEFTP 50
           M S L   A  VV +  R          SLS        +L VHRDT  +NL + F+FTP
Sbjct: 1   MASRLVPFACRVVPRVSRPFQRAQWRAFSLSRPSWNESGSLNVHRDTPQNNLKIPFKFTP 60

Query: 51  DNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVAT 110
            N++  + ++S YP  +++AAV+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVAT
Sbjct: 61  QNEELIKEVVSRYPSQYKKAAVMPLLDLGQRQHGFCSISVMNEVARILEMPPMRVYEVAT 120

Query: 111 FYTMFIRKPIGEERIKSILQYHLNWCTTT 139
           FYTM+ R P+G        ++H+  CTT 
Sbjct: 121 FYTMYNRDPVG--------KFHVQVCTTA 141


>gi|34580594|ref|ZP_00142074.1| NADH dehydrogenase I chain E [Rickettsia sibirica 246]
 gi|28261979|gb|EAA25483.1| NADH dehydrogenase I chain E [Rickettsia sibirica 246]
          Length = 167

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/119 (49%), Positives = 78/119 (65%), Gaps = 9/119 (7%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F F   N   A  II  YP   +R+A++PLLDLAQRQ+G WLP+ A+ YVA+ L +P +R
Sbjct: 8   FTFDKKNLNLAAEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPYIR 67

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER 163
            YEVATFYTMF  K +G        +YH+  CTTTPCWLR SD I+++ +KK  + L+ 
Sbjct: 68  AYEVATFYTMFNLKRVG--------KYHIQVCTTTPCWLRGSDDIMKICEKKLGVQLKE 118


>gi|322710266|gb|EFZ01841.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Metarhizium
           anisopliae ARSEF 23]
          Length = 305

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/127 (46%), Positives = 83/127 (65%), Gaps = 10/127 (7%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           L +HR+T D+N D+ F+F  +N+     I+  YP  +++AAV+PLLDL QRQHG+  IS 
Sbjct: 85  LPLHRNTADNNPDIPFKFNKENETVIAEILKRYPEQYKKAAVMPLLDLGQRQHGFTSISV 144

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLR--NSDA 148
           M+ VA  L +P MRVYEVA+FYTM+ R P+G        ++ +  CTTTPC L    SD 
Sbjct: 145 MNEVARLLEMPPMRVYEVASFYTMYNRSPVG--------KFFVQACTTTPCQLGGCGSDV 196

Query: 149 ILEVIKK 155
           I++ IK+
Sbjct: 197 IVKAIKE 203


>gi|373450760|ref|ZP_09542725.1| NADH-quinone oxidoreductase, chain E [Wolbachia pipientis wAlbB]
 gi|371932041|emb|CCE77738.1| NADH-quinone oxidoreductase, chain E [Wolbachia pipientis wAlbB]
          Length = 166

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 74/112 (66%), Gaps = 8/112 (7%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR 104
           +F FT DN ++A+  I +YP G E +AV+PLL L Q Q GW+P SAM YVAD L++P +R
Sbjct: 7   QFSFTSDNLRKAKKSIEMYPKGREGSAVMPLLYLVQEQCGWVPESAMRYVADMLHIPHIR 66

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VYEVA F TM+  KP+G        +Y +  C TTPCWL NS+ +L   KKK
Sbjct: 67  VYEVANFCTMYNLKPVG--------KYLIQICRTTPCWLCNSEEVLSTFKKK 110


>gi|83592894|ref|YP_426646.1| NADH dehydrogenase (ubiquinone) [Rhodospirillum rubrum ATCC 11170]
 gi|386349625|ref|YP_006047873.1| NADH dehydrogenase (ubiquinone) [Rhodospirillum rubrum F11]
 gi|83575808|gb|ABC22359.1| NADH dehydrogenase (ubiquinone) [Rhodospirillum rubrum ATCC 11170]
 gi|346718061|gb|AEO48076.1| NADH dehydrogenase (ubiquinone) [Rhodospirillum rubrum F11]
          Length = 208

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 73/114 (64%), Gaps = 8/114 (7%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTP+N ++A+AI++ YP G ER+ V+PLLDLAQRQ GW+  +A+  V      P+MRV
Sbjct: 14  FAFTPENLEKAQAILAKYPKGRERSGVLPLLDLAQRQQGWVSHAAIEEVGRLTGTPRMRV 73

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
            EVATFYTM+   P G        ++H+  CT  PCWLR SD IL  ++ +  +
Sbjct: 74  LEVATFYTMYKLSPKG--------RHHIEVCTNLPCWLRGSDEILRAVRDELGI 119


>gi|379019172|ref|YP_005295406.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. Hlp#2]
 gi|376331752|gb|AFB28986.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. Hlp#2]
          Length = 167

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/119 (49%), Positives = 78/119 (65%), Gaps = 9/119 (7%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F F   N   AE II  YP   +R+A++PLLDLAQRQ+G WLP+ A+ YVA+ L +P +R
Sbjct: 8   FTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPYIR 67

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER 163
            YEVATFYTMF  K +G        +YH+  CTTTPCWL  SD I+++ +KK  + L+ 
Sbjct: 68  AYEVATFYTMFNLKRVG--------KYHIQVCTTTPCWLSGSDDIMKICEKKLGVKLKE 118


>gi|379712233|ref|YP_005300572.1| NADH dehydrogenase subunit E [Rickettsia philipii str. 364D]
 gi|376328878|gb|AFB26115.1| NADH dehydrogenase subunit E [Rickettsia philipii str. 364D]
          Length = 167

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/119 (49%), Positives = 78/119 (65%), Gaps = 9/119 (7%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F F   N   AE II  YP   +R+A++PLLDLAQRQ+G WLP+ A+ YVA+ L +P +R
Sbjct: 8   FTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPYIR 67

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER 163
            YEVATFYTMF  K +G        +YH+  CTTTPCWL  SD I+++ +KK  + L+ 
Sbjct: 68  AYEVATFYTMFNLKRVG--------KYHIQVCTTTPCWLSGSDDIMKICEKKLGVKLKE 118


>gi|157828355|ref|YP_001494597.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933063|ref|YP_001649852.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. Iowa]
 gi|378721168|ref|YP_005286055.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. Colombia]
 gi|378722520|ref|YP_005287406.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. Arizona]
 gi|378723876|ref|YP_005288760.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. Hauke]
 gi|379016570|ref|YP_005292805.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. Brazil]
 gi|379017665|ref|YP_005293900.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. Hino]
 gi|157800836|gb|ABV76089.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908150|gb|ABY72446.1| NADH-quinone oxidoreductase chain E [Rickettsia rickettsii str.
           Iowa]
 gi|376325094|gb|AFB22334.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. Brazil]
 gi|376326192|gb|AFB23431.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. Colombia]
 gi|376327544|gb|AFB24782.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. Arizona]
 gi|376330231|gb|AFB27467.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. Hino]
 gi|376332891|gb|AFB30124.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. Hauke]
          Length = 167

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/119 (49%), Positives = 78/119 (65%), Gaps = 9/119 (7%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F F   N   AE II  YP   +R+A++PLLDLAQRQ+G WLP+ A+ YVA+ L +P +R
Sbjct: 8   FTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPYIR 67

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER 163
            YEVATFYTMF  K +G        +YH+  CTTTPCWL  SD I+++ +KK  + L+ 
Sbjct: 68  AYEVATFYTMFNLKRVG--------KYHIQVCTTTPCWLSGSDDIMKICEKKLGVKLKE 118


>gi|58699915|ref|ZP_00374508.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630491|ref|YP_002727282.1| NADH dehydrogenase I, E subunit [Wolbachia sp. wRi]
 gi|58533569|gb|EAL57975.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592472|gb|ACN95491.1| NADH dehydrogenase I, E subunit [Wolbachia sp. wRi]
          Length = 166

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 73/112 (65%), Gaps = 8/112 (7%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR 104
           +F FT +N K+A   I +YP G E +AV+PLL L Q Q GW+  SAM YVAD L++P +R
Sbjct: 7   QFSFTSENLKKAGKFIEMYPKGREGSAVMPLLYLVQEQCGWVSESAMRYVADMLHIPHIR 66

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VYEVA FYTM+  KP+G        +Y +  C TTPCWL NS+ +L   KKK
Sbjct: 67  VYEVANFYTMYNLKPVG--------KYLIQICRTTPCWLCNSEEVLNTFKKK 110


>gi|42520577|ref|NP_966492.1| NADH dehydrogenase subunit E [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410316|gb|AAS14426.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 166

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 73/112 (65%), Gaps = 8/112 (7%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR 104
           +F FT +N K+A   I +YP G E +AV+PLL L Q Q GW+  SAM YVAD L++P +R
Sbjct: 7   QFSFTSENLKKAGKFIEMYPKGREGSAVMPLLYLVQEQCGWVSESAMRYVADMLHIPHIR 66

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VYEVA FYTM+  KP+G        +Y +  C TTPCWL NS+ +L   KKK
Sbjct: 67  VYEVANFYTMYNLKPVG--------KYLIQICRTTPCWLCNSEEVLNTFKKK 110


>gi|148259936|ref|YP_001234063.1| NADH-quinone oxidoreductase subunit E [Acidiphilium cryptum JF-5]
 gi|326403110|ref|YP_004283191.1| NADH-quinone oxidoreductase subunit E [Acidiphilium multivorum
           AIU301]
 gi|338981058|ref|ZP_08632294.1| NADH-quinone oxidoreductase, E subunit [Acidiphilium sp. PM]
 gi|146401617|gb|ABQ30144.1| NADH dehydrogenase subunit E [Acidiphilium cryptum JF-5]
 gi|325049971|dbj|BAJ80309.1| NADH-quinone oxidoreductase subunit E [Acidiphilium multivorum
           AIU301]
 gi|338208024|gb|EGO95923.1| NADH-quinone oxidoreductase, E subunit [Acidiphilium sp. PM]
          Length = 203

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 96/187 (51%), Gaps = 42/187 (22%)

Query: 39  DDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ------HGWLPISAMH 92
           +D  +  F F   ++    +II+ YP G + +AV+PLLDLAQRQ      H W+P +AM 
Sbjct: 2   NDMTEPAFSFDETSEALIPSIIAKYPEGRQASAVMPLLDLAQRQMARQTGHAWVPRTAMD 61

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV 152
            +A  L++P MRVYEVATFYTMF  KP+G        ++HL  CTTTPCWLR SD ++  
Sbjct: 62  VIAARLSMPPMRVYEVATFYTMFHTKPVG--------KFHLQVCTTTPCWLRGSDEVMSA 113

Query: 153 IKKKCNMMLER-------------------------QDLEPKDMEQIIDDLKAGKKPAPG 187
            +K      E                          +DL+    E +++ L+AG  P   
Sbjct: 114 CRKAAEADGETFSIEEVECLGCCVNAPVVQVNDDVYEDLDGPRTEALLERLRAGDVP--- 170

Query: 188 PSGYTSG 194
           P+G T G
Sbjct: 171 PAGSTIG 177


>gi|323456618|gb|EGB12485.1| hypothetical protein AURANDRAFT_59800 [Aureococcus anophagefferens]
          Length = 265

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/149 (44%), Positives = 87/149 (58%), Gaps = 17/149 (11%)

Query: 10  SNVVRQN---VRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVG 66
           S V R     VR LS     N   L  H +T D+  +  F+F+PDN  RAE I+  YP  
Sbjct: 15  SGVARAGGPGVRPLS-----NFHPLAQHVNTGDNTKETTFDFSPDNHLRAEHILGKYPAN 69

Query: 67  HERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERI 125
           ++ + +IPLLDLAQRQ  GWLP++AM  VA ++    MRVYEVATFYTMF R+ +G    
Sbjct: 70  YKMSGIIPLLDLAQRQSGGWLPLAAMDKVAKYVGCAPMRVYEVATFYTMFNREQVG---- 125

Query: 126 KSILQYHLNWCTTTPCWLRNSDAILEVIK 154
                Y +  C TTPC +  S+AI + I+
Sbjct: 126 ----TYFIQLCGTTPCMVCGSEAIKKSIE 150


>gi|147797328|emb|CAN67085.1| hypothetical protein VITISV_036396 [Vitis vinifera]
          Length = 243

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/271 (33%), Positives = 129/271 (47%), Gaps = 74/271 (27%)

Query: 5   LAKLASNVVRQNVRSLSTTQ--RLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISI 62
           LA+LA+       R L   Q  R NH     H D+ D+N ++ +EF   NK + + I+S 
Sbjct: 2   LARLATK------RLLEVRQIFRQNHQ----HLDSPDNNPNIPWEFNDANKGKVKEILSH 51

Query: 63  YPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIG 121
           YP  ++++AVIPLLDLAQ+QH GWLP+SAM  VA  + +  +RVYEVATFY+MF R  +G
Sbjct: 52  YPSNYKQSAVIPLLDLAQQQHGGWLPVSAMDAVAKVVEVAPIRVYEVATFYSMFNRAKVG 111

Query: 122 EERIKSILQYHLNWCTTTPCWLRNS----DAILEVIKKKCNMMLE--------------- 162
                   +YHL  C TTPC +R S    DA+L+ +  K N + +               
Sbjct: 112 --------KYHLLVCGTTPCMIRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCC 163

Query: 163 ----------------------RQDLEPKDMEQIIDDLKAGKKPAPGPSG-YTSGIGSQS 199
                                  +D+ PK + +I++ L+ G+KP  G      +  G + 
Sbjct: 164 VNAPMITVADYSTGSEGYTYNYYEDVTPKRVVEIVEMLRRGEKPPHGTQNPQRTRCGPEG 223

Query: 200 GRFCQAREAYHDMTSLTGEPHGPWDSKRDFC 230
           G            T+L GEP  P     D C
Sbjct: 224 GN-----------TTLLGEPKAPPCRDLDAC 243


>gi|449019028|dbj|BAM82430.1| NADH dehydrogenase I flavoprotein 24kDa subunit [Cyanidioschyzon
           merolae strain 10D]
          Length = 249

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 117/229 (51%), Gaps = 53/229 (23%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAM 91
           VHRD++ ++    F+F+ DN K+   I+  YPV ++++AVIP+LDLAQR+  GWLP++AM
Sbjct: 42  VHRDSEGNSEFTTFDFSEDNYKKIAEILKRYPVNYKQSAVIPVLDLAQRECGGWLPLAAM 101

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNS----- 146
           + VA  L +  MRVYE+ATFYTMF   PIG        +Y++  CTTTPC LR +     
Sbjct: 102 NKVAQVLGMQPMRVYEIATFYTMFNTVPIG--------KYNVQVCTTTPCMLRGAYDILR 153

Query: 147 ---------------DAILEVIKKKC------NMMLE-----RQDLEPKDMEQIIDDLKA 180
                          D +  +++ +C        M++      +DL P+  + ++   + 
Sbjct: 154 ACEEESGARAGGDSPDGLFHIMEVECLGACANAPMMQINDDYYEDLTPQSAKAVLKSFRD 213

Query: 181 GKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPWDSKRDF 229
           G    PGP      +  +S    Q +      T+L  EP GP  S RD 
Sbjct: 214 GNPLKPGPQ-----VARKSSMGIQGK------TTLLEEPPGP--SCRDL 249


>gi|222632177|gb|EEE64309.1| hypothetical protein OsJ_19146 [Oryza sativa Japonica Group]
          Length = 274

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/132 (43%), Positives = 85/132 (64%), Gaps = 9/132 (6%)

Query: 23  TQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ 82
           + RL   AL  H D+ ++N D+ +EFT  N K+   I+S YP  ++++ +IP+LDLAQ+Q
Sbjct: 43  SSRLFSTALNYHLDSPENNPDMPWEFTEANMKKVNEILSHYPSNYKQSGIIPMLDLAQQQ 102

Query: 83  H-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPC 141
           H GW+P++AM+ +A  + +  +RVYEVATFYTMF R  +G        +YHL  C TTPC
Sbjct: 103 HGGWVPVAAMNAIAKIVEVAPIRVYEVATFYTMFNRTKVG--------KYHLLVCGTTPC 154

Query: 142 WLRNSDAILEVI 153
            +R S  I E +
Sbjct: 155 MIRGSREIEEAL 166


>gi|218197075|gb|EEC79502.1| hypothetical protein OsI_20569 [Oryza sativa Indica Group]
          Length = 274

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/132 (43%), Positives = 85/132 (64%), Gaps = 9/132 (6%)

Query: 23  TQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ 82
           + RL   AL  H D+ ++N D+ +EFT  N K+   I+S YP  ++++ +IP+LDLAQ+Q
Sbjct: 43  SSRLFSTALNYHLDSPENNPDMPWEFTEANMKKVNEILSHYPSNYKQSGIIPMLDLAQQQ 102

Query: 83  H-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPC 141
           H GW+P++AM+ +A  + +  +RVYEVATFYTMF R  +G        +YHL  C TTPC
Sbjct: 103 HGGWVPVAAMNAIAKIVEVAPIRVYEVATFYTMFNRTKVG--------KYHLLVCGTTPC 154

Query: 142 WLRNSDAILEVI 153
            +R S  I E +
Sbjct: 155 MIRGSREIEEAL 166


>gi|115464801|ref|NP_001056000.1| Os05g0509200 [Oryza sativa Japonica Group]
 gi|48475199|gb|AAT44268.1| putative NADH-ubiquinone oxidoreductase [Oryza sativa Japonica
           Group]
 gi|113579551|dbj|BAF17914.1| Os05g0509200 [Oryza sativa Japonica Group]
 gi|215692591|dbj|BAG88011.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704428|dbj|BAG93862.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 274

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/132 (43%), Positives = 85/132 (64%), Gaps = 9/132 (6%)

Query: 23  TQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ 82
           + RL   AL  H D+ ++N D+ +EFT  N K+   I+S YP  ++++ +IP+LDLAQ+Q
Sbjct: 43  SSRLFSTALNYHLDSPENNPDMPWEFTEANMKKVNEILSHYPSNYKQSGIIPMLDLAQQQ 102

Query: 83  H-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPC 141
           H GW+P++AM+ +A  + +  +RVYEVATFYTMF R  +G        +YHL  C TTPC
Sbjct: 103 HGGWVPVAAMNAIAKIVEVAPIRVYEVATFYTMFNRTKVG--------KYHLLVCGTTPC 154

Query: 142 WLRNSDAILEVI 153
            +R S  I E +
Sbjct: 155 MIRGSREIEEAL 166


>gi|58584851|ref|YP_198424.1| NADH dehydrogenase subunit E [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|58419167|gb|AAW71182.1| NADH:ubiquinone oxidoreductase chain E [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 166

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 74/112 (66%), Gaps = 8/112 (7%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR 104
           +F FT +N K+A+  I +YP G E +AV+PLL L Q Q GW+P  AM YVAD L++P +R
Sbjct: 7   QFSFTSENLKKAKKFIEVYPKGKEGSAVMPLLYLVQEQCGWVPEPAMCYVADMLHIPHIR 66

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VYEVA FYTM+  KP+G        +Y +  C TTPCWL +S+ IL   KKK
Sbjct: 67  VYEVANFYTMYNLKPVG--------KYLIRVCRTTPCWLCSSEEILNTFKKK 110


>gi|195494886|ref|XP_002095032.1| GE22166 [Drosophila yakuba]
 gi|194181133|gb|EDW94744.1| GE22166 [Drosophila yakuba]
          Length = 241

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 104/210 (49%), Gaps = 50/210 (23%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
           +KFEF+ DN++R +A+++ YP    + A++PLLD+AQRQ GWL ISA+  VA+ + +  M
Sbjct: 35  LKFEFSKDNQRRVKALLAWYPRAEWKGALLPLLDIAQRQQGWLSISAVQAVAETIKIDPM 94

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER 163
             +E A FYTMF  KP G        +Y ++ CT+TPC LR  D I E  KK  N+   +
Sbjct: 95  EAFEAAQFYTMFFMKPRG--------KYVVSVCTSTPCKLRGGDEIFEACKKTLNLEHGQ 146

Query: 164 -------------------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYT 192
                                          +DL+ K +  I+ DL+  K P  GP    
Sbjct: 147 TTPDMQFTLKEDYCMGACVNAPVLAVNDDMYEDLDEKSLANILADLRNDKLPPAGP---- 202

Query: 193 SGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
                ++GRF  A E    +T+L  EP  P
Sbjct: 203 -----RNGRF--ASEPKGGLTTLKTEPPPP 225


>gi|103486792|ref|YP_616353.1| NADH-quinone oxidoreductase subunit E [Sphingopyxis alaskensis
           RB2256]
 gi|98976869|gb|ABF53020.1| NADH-quinone oxidoreductase, E subunit [Sphingopyxis alaskensis
           RB2256]
          Length = 222

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 105/206 (50%), Gaps = 48/206 (23%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADFL 98
           F +T +N ++A+A+I+ YP G +R+AV+PLLDLAQRQ        GWLP+  + YVA  L
Sbjct: 20  FAWTAENAEKAKAVIARYPAGRQRSAVMPLLDLAQRQVGAETQTQGWLPVPVIEYVAAQL 79

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN 158
           ++P +R YEVATFYTM+   P+G        +YH+  C TTPC LR SD +    K +  
Sbjct: 80  DMPFIRAYEVATFYTMYNLAPVG--------RYHVQVCGTTPCLLRGSDDVTAACKNRGM 131

Query: 159 M-------------------------MLE-----RQDLEPKDMEQIIDDLKAGKKPAPG- 187
           +                         M++      +DL+   M +I+D+L AGK+P  G 
Sbjct: 132 VKGKTTPDGLFTLSEVECMGTCANAPMVQINDDNYEDLDYDSMTRILDELAAGKQPKTGT 191

Query: 188 --PSGYTSGIGSQSGRFCQAREAYHD 211
             P  +TS          +  EA HD
Sbjct: 192 QNPRRHTSEPEGGPTTLKEMVEANHD 217


>gi|409401846|ref|ZP_11251500.1| NADH-quinone oxidoreductase subunit E [Acidocella sp. MX-AZ02]
 gi|409129483|gb|EKM99334.1| NADH-quinone oxidoreductase subunit E [Acidocella sp. MX-AZ02]
          Length = 208

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/212 (37%), Positives = 100/212 (47%), Gaps = 56/212 (26%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG------WLPISAMHYVADFLN 99
           F +T  N K  +  I  YP G + +AV  LLDLAQRQ G      WLP +AM   A+ L 
Sbjct: 11  FAYTDANMKLVQKAIKKYPEGKQMSAVKSLLDLAQRQMGEQTGSAWLPRAAMDVAAEILG 70

Query: 100 LPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           +  MRVYEVATFYTMF  KP+G        +YHL  CTTTPCWLR SD I+   KK   +
Sbjct: 71  VSPMRVYEVATFYTMFNLKPVG--------KYHLQVCTTTPCWLRGSDDIVSACKKASGV 122

Query: 160 ---------------------------MLE-----RQDLEPKDMEQIIDDLKAGKKPAPG 187
                                      +L+      +D+  + +E ++ DLKAGK   P 
Sbjct: 123 AHFGGTSEDGLFTLKEVECLGACVNAPILQINDDYYEDMNAERVEALLADLKAGKPLPPA 182

Query: 188 PSGYTSGIGSQSGRFCQAREAYHDMTSLTGEP 219
                   GS  GR   A  A   +TSLT  P
Sbjct: 183 --------GSLGGRASSAPAA--GLTSLTSNP 204


>gi|302830969|ref|XP_002947050.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Volvox carteri f.
           nagariensis]
 gi|300267457|gb|EFJ51640.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Volvox carteri f.
           nagariensis]
          Length = 281

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 101/201 (50%), Gaps = 50/201 (24%)

Query: 29  DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLP 87
           D   VH+DT ++N  + F+FT  N K    II+ YP  ++ +A+IP+LD+AQ+Q+ GWL 
Sbjct: 47  DIFNVHKDTPENNASLTFDFTEANYKIVNEIIARYPPNYKASAIIPVLDVAQQQNGGWLS 106

Query: 88  ISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSD 147
           ++A++ VA  L++  +RVYEVATFYTMF R  IG        +YH+  C TTPC L+ + 
Sbjct: 107 LAALNRVAKVLDMAPIRVYEVATFYTMFNRTKIG--------KYHVLICGTTPCRLQGAQ 158

Query: 148 AILEVIKKKCNMMLER-----------------------------------------QDL 166
            I E + K   + + +                                         +DL
Sbjct: 159 GIEEAVTKHLGIHIGQTTPDGLFTLGEMECMGACVNAPMVAIADYTKGVEGFEYTYYEDL 218

Query: 167 EPKDMEQIIDDLKAGKKPAPG 187
            P D+  I+D +K G KP PG
Sbjct: 219 TPSDIVGILDTIKKGGKPKPG 239


>gi|18411985|ref|NP_567244.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Arabidopsis
           thaliana]
 gi|55584146|sp|O22769.3|NDUV2_ARATH RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial; Flags: Precursor
 gi|15450451|gb|AAK96519.1| AT4g02580/T10P11_14 [Arabidopsis thaliana]
 gi|24797038|gb|AAN64531.1| At4g02580/T10P11_14 [Arabidopsis thaliana]
 gi|332656798|gb|AEE82198.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Arabidopsis
           thaliana]
          Length = 255

 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/151 (43%), Positives = 92/151 (60%), Gaps = 10/151 (6%)

Query: 1   MLSNLAKLASNVVRQNVRS-LSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAI 59
           ML+ LA      +RQ  R   S   R    AL  H D+ D+  D+ +EF+  N+ + + I
Sbjct: 1   MLARLAAKRLLEIRQVFRQPTSQVTRSLSTALNYHLDSPDNKPDLPWEFSEANQSKVKEI 60

Query: 60  ISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118
           +S YP  ++++AVIPLLDLAQ+Q+ GWLP+SAM+ VA  + +  +RVYEVATFY+MF R 
Sbjct: 61  LSYYPSNYKQSAVIPLLDLAQQQNGGWLPVSAMNAVAKVIEVAPIRVYEVATFYSMFNRA 120

Query: 119 PIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
            +G        +YHL  C TTPC +R S  I
Sbjct: 121 KVG--------KYHLLVCGTTPCMIRGSRDI 143


>gi|347528700|ref|YP_004835447.1| NADH-quinone oxidoreductase subunit E [Sphingobium sp. SYK-6]
 gi|345137381|dbj|BAK66990.1| NADH-quinone oxidoreductase chain E [Sphingobium sp. SYK-6]
          Length = 221

 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 95/180 (52%), Gaps = 45/180 (25%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADFL 98
           F +T +N  +A+ II+ YP G +++AV+PLLDLAQRQ        GWLPI  + YVA  L
Sbjct: 20  FAWTAENAAQAKTIIARYPEGRQQSAVMPLLDLAQRQVGAETNTQGWLPIPVIEYVAAQL 79

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK-- 156
           ++P MR YEVATFYTM+   P+G        ++H+  C TTPC LR SD +L+   K+  
Sbjct: 80  DMPFMRAYEVATFYTMYNLAPVG--------RFHVQVCGTTPCMLRGSDDVLDACYKRGL 131

Query: 157 ----------------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGP 188
                                  N  + +      +DL  + M  I+DDL AGK+P  GP
Sbjct: 132 KKGATTADGLFTLTEVECLGACANAPMVQINDDNYEDLTFETMTAILDDLAAGKQPKIGP 191


>gi|195171381|ref|XP_002026484.1| GL15498 [Drosophila persimilis]
 gi|194111390|gb|EDW33433.1| GL15498 [Drosophila persimilis]
          Length = 190

 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 63/133 (47%), Positives = 85/133 (63%), Gaps = 19/133 (14%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
           +KFEFT +NK R E++++ YP    + A++PLLD+AQRQHGWLPISA+  VA+ L +  M
Sbjct: 42  MKFEFTKENKARVESLLTWYPEAERQGALLPLLDIAQRQHGWLPISAVVAVAEVLKIDPM 101

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER 163
           + YE A +YTMF  KP G         Y ++ CT+TPC+LR SD +L    K C+ ML  
Sbjct: 102 QAYETAKYYTMFHMKPRG--------MYVVSVCTSTPCFLRGSDDLL----KACSKMLR- 148

Query: 164 QDLEP----KDME 172
             LEP    KDM+
Sbjct: 149 --LEPGETSKDMQ 159


>gi|402496715|ref|YP_006555975.1| NADH dehydrogenase subunit E [Wolbachia endosymbiont of Onchocerca
           ochengi]
 gi|398649988|emb|CCF78158.1| NADH dehydrogenase subunit E [Wolbachia endosymbiont of Onchocerca
           ochengi]
          Length = 166

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 75/112 (66%), Gaps = 8/112 (7%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR 104
           +F FT +N ++A+  I +YP G E +AV+PLL L Q Q GW+P SAM Y+AD L +P +R
Sbjct: 7   QFSFTSENLEKAKKFIKMYPKGREGSAVMPLLYLIQEQCGWVPRSAMCYIADMLCIPHIR 66

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VYEVA FYTM+  KP+G        +Y +  C TTPCWL +S+ +L+  KKK
Sbjct: 67  VYEVANFYTMYNLKPVG--------KYLVQICRTTPCWLCSSEEVLDAFKKK 110


>gi|74198839|dbj|BAE30647.1| unnamed protein product [Mus musculus]
 gi|74219516|dbj|BAE29530.1| unnamed protein product [Mus musculus]
          Length = 152

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 88/163 (53%), Gaps = 50/163 (30%)

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           M+ VA+ L +P MRVYEVATFYTM+ RKP+G        +YH+  CTTTPC LR+SD+IL
Sbjct: 1   MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYHIQVCTTTPCMLRDSDSIL 52

Query: 151 EVIKKKCNMMLER-------------------------------QDLEPKDMEQIIDDLK 179
           E +++K  + +                                 +DL PKD+E+IID+LK
Sbjct: 53  ETLQRKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELK 112

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           AGK P PGP         +SGRFC   E    +TSLT  P GP
Sbjct: 113 AGKVPKPGP---------RSGRFCC--EPAGGLTSLTEPPKGP 144


>gi|307942121|ref|ZP_07657472.1| NADH dehydrogenase subunit e [Roseibium sp. TrichSKD4]
 gi|307774407|gb|EFO33617.1| NADH dehydrogenase subunit e [Roseibium sp. TrichSKD4]
          Length = 468

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 90/175 (51%), Gaps = 39/175 (22%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMR 104
           FEFTPDN   A+ +I  YP G + +AVIPLL  AQ QH GW+   A+ Y+AD L++P +R
Sbjct: 14  FEFTPDNLAWAKKLIDRYPAGRQASAVIPLLWRAQEQHDGWVCEPAIRYIADMLDIPHIR 73

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER- 163
           V EVATFYTMF  +P+G        + H+  C TTPC LR S+ ++++ K +    +   
Sbjct: 74  VLEVATFYTMFQLQPVGS-------KAHIQVCGTTPCQLRGSEDLIKICKSRIAKHMHEI 126

Query: 164 ------------------------------QDLEPKDMEQIIDDLKAGKKPAPGP 188
                                         +DL P    Q+IDD+  GK+  PGP
Sbjct: 127 SEDGMFSWEEVECLGACVNAPMVQIFKDTYEDLTPDSFNQLIDDIAEGKEVMPGP 181


>gi|148555893|ref|YP_001263475.1| NADH-quinone oxidoreductase subunit E [Sphingomonas wittichii RW1]
 gi|148501083|gb|ABQ69337.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas wittichii RW1]
          Length = 229

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/118 (48%), Positives = 74/118 (62%), Gaps = 15/118 (12%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADFL 98
           F +TP+N  +AE II+ YP G +++AV+PLLDLAQRQ        GWLP+  M Y+   L
Sbjct: 20  FAWTPENAAQAEKIIARYPPGRQQSAVMPLLDLAQRQVGAETGTQGWLPVPVMEYIGAQL 79

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
            +  +RVYEVATFYTM+   P+G        +YH+  C TTPC LR SD +LE   KK
Sbjct: 80  GMAYIRVYEVATFYTMYNLAPVG--------RYHVQVCGTTPCMLRGSDDVLEACYKK 129


>gi|296813229|ref|XP_002846952.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Arthroderma otae CBS
           113480]
 gi|238842208|gb|EEQ31870.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Arthroderma otae CBS
           113480]
          Length = 263

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 110/217 (50%), Gaps = 46/217 (21%)

Query: 12  VVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAA 71
           +  +  R+ +T   L  D L VHR+T  +N  + F+F+ +N    + I+  YP  +++ A
Sbjct: 21  ISSRQCRTFTTASPLMSDVLHVHRNTPTNNPTIPFKFSQENLTVIDEILKRYPPQYKKGA 80

Query: 72  VIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGE--------- 122
           V+PLLDL QRQHG+  IS M+ VA  L +P MRVYEVATFYTM+ R+P+G+         
Sbjct: 81  VMPLLDLGQRQHGYTSISVMNEVARMLEMPPMRVYEVATFYTMYNREPVGKYFVQICTTL 140

Query: 123 -----ERIKSILQYHLNWCT---TTPCWLRNSDAILEVIKKKC-----NMMLER------ 163
                ++I   +  HL   +   TTP      D I  V++ +C     N  + +      
Sbjct: 141 GGCGSDKIVKAITEHLGVSSHGATTP------DGIFTVLEVECLGACVNAPMVQINDDYY 194

Query: 164 QDLEPKDMEQIIDDLKAG------------KKPAPGP 188
           +DL P+   Q++D LKA             K P PGP
Sbjct: 195 EDLTPETTIQLLDALKASAVAAENGTQSNVKVPPPGP 231


>gi|83311882|ref|YP_422146.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Magnetospirillum
           magneticum AMB-1]
 gi|82946723|dbj|BAE51587.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Magnetospirillum
           magneticum AMB-1]
          Length = 202

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 94/174 (54%), Gaps = 39/174 (22%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTP+  ++A+A ++ YPVG +++AV+PLLDLAQRQ GW+  +AM  +A+ L++  +RV
Sbjct: 11  FAFTPEYLEKAKAFVAKYPVGRQQSAVMPLLDLAQRQEGWVSRAAMEVIAEMLDMAPIRV 70

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI---------------- 149
            EVATFYTM+ RKP+G         +H+  CT  PC LR SD +                
Sbjct: 71  EEVATFYTMYNRKPVG--------TFHVQVCTNLPCMLRGSDDVVAAAKAALGVEFGDMT 122

Query: 150 ---------LEVIKKKCNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGP 188
                    +E +    N  + +      +DL P+  + +++  K G+ P PGP
Sbjct: 123 ADGKFTLSEVECLGACVNAPMMQINDDYYEDLTPETTKAVLEAFKRGETPKPGP 176


>gi|194872081|ref|XP_001972962.1| GG15826 [Drosophila erecta]
 gi|190654745|gb|EDV51988.1| GG15826 [Drosophila erecta]
          Length = 238

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 104/210 (49%), Gaps = 50/210 (23%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
           +KFEF+ DN++R +A+++ YP    + A++PLLD+AQRQ GWL ISA+  VA+ + +  M
Sbjct: 32  LKFEFSKDNQRRVKALLAWYPKAEWKGALLPLLDIAQRQQGWLSISAVQAVAETIKIDPM 91

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER 163
             +E A FYTMF  KP G        +Y ++ CT+TPC LR  D I E  KK  N+   +
Sbjct: 92  EAFEAAQFYTMFFMKPRG--------KYVVSVCTSTPCKLRGGDEIFEACKKALNLEHGQ 143

Query: 164 -------------------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYT 192
                                          +DL+ K +  I+ DL+  K P  GP    
Sbjct: 144 TTPDMQFTLKEDYCMGACVNAPVLAVNDDMYEDLDEKSLASILADLRNDKLPPAGP---- 199

Query: 193 SGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
                ++GR C A E    +T+L  EP  P
Sbjct: 200 -----RNGR-C-ASEPKGGLTTLKSEPPPP 222


>gi|226500344|ref|NP_001140609.1| uncharacterized protein LOC100272681 [Zea mays]
 gi|194700168|gb|ACF84168.1| unknown [Zea mays]
          Length = 324

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 88/136 (64%), Gaps = 10/136 (7%)

Query: 19  SLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDL 78
           S+S+T+  +  AL  H D+ ++  D+K+EF+  N K+   I+S YP  ++++ +IPLLDL
Sbjct: 90  SVSSTRPFS-TALNYHLDSPENKPDMKWEFSQANMKKVNEILSHYPSNYKQSGIIPLLDL 148

Query: 79  AQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCT 137
           AQ+QH GW+P++AM  +A  + +  +RVYEVATFYTMF R  +G        +YHL  C 
Sbjct: 149 AQQQHGGWVPVAAMDAIAKIVEVAPIRVYEVATFYTMFNRTKVG--------KYHLLVCG 200

Query: 138 TTPCWLRNSDAILEVI 153
           TTPC +R S  I E +
Sbjct: 201 TTPCMIRGSREIEETL 216


>gi|118368650|ref|XP_001017531.1| NADH-quinone oxidoreductase, E subunit family protein [Tetrahymena
           thermophila]
 gi|89299298|gb|EAR97286.1| NADH-quinone oxidoreductase, E subunit family protein [Tetrahymena
           thermophila SB210]
          Length = 274

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/126 (45%), Positives = 81/126 (64%), Gaps = 9/126 (7%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPIS 89
           L  HR   D++  V FEFTP+N K  E I++ YP+  +R+AV+PLL L Q Q+  W+P+S
Sbjct: 27  LAAHRKNDDNSDSVPFEFTPENYKEIEKILAKYPLKQKRSAVMPLLYLVQEQNNNWVPLS 86

Query: 90  AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           AM  +A  L +P++ VYEVATFYTM+ R+P+G        ++HL  C TTPC L  S  I
Sbjct: 87  AMKKIAKLLEMPEIDVYEVATFYTMYNREPVG--------KFHLQICGTTPCQLCGSREI 138

Query: 150 LEVIKK 155
            + I++
Sbjct: 139 TKAIEE 144


>gi|21355353|ref|NP_648965.1| CG6485 [Drosophila melanogaster]
 gi|7294004|gb|AAF49361.1| CG6485 [Drosophila melanogaster]
 gi|19528027|gb|AAL90128.1| AT21479p [Drosophila melanogaster]
 gi|220958896|gb|ACL91991.1| CG6485-PA [synthetic construct]
          Length = 238

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 104/210 (49%), Gaps = 50/210 (23%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
           +KFEF+ DN++R +A+++ YP    + A++PLLD+AQRQ GWL ISA+  VA+ + +  M
Sbjct: 32  LKFEFSKDNQRRVKALLAWYPQAEWKGALLPLLDIAQRQQGWLSISAVQAVAETIKIDPM 91

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER 163
             +E A FYTMF  KP G        +Y ++ CT+TPC LR  D I E  KK  N+   +
Sbjct: 92  EAFEAAQFYTMFFMKPRG--------KYVVSVCTSTPCKLRGGDEIFEACKKTLNLEHGQ 143

Query: 164 -------------------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYT 192
                                          +DL+ K +  I+ DL+  K P  GP    
Sbjct: 144 TTPDMQFTLKEDYCMGACVNAPVLAVNDDMYEDLDEKSLANILADLRNDKLPPAGP---- 199

Query: 193 SGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
                ++GRF  A E    +T+L  +P  P
Sbjct: 200 -----RNGRF--ASEPKGGLTTLKIQPPPP 222


>gi|224028933|gb|ACN33542.1| unknown [Zea mays]
          Length = 281

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 88/136 (64%), Gaps = 10/136 (7%)

Query: 19  SLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDL 78
           S+S+T+  +  AL  H D+ ++  D+K+EF+  N K+   I+S YP  ++++ +IPLLDL
Sbjct: 47  SVSSTRPFS-TALNYHLDSPENKPDMKWEFSQANMKKVNEILSHYPSNYKQSGIIPLLDL 105

Query: 79  AQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCT 137
           AQ+QH GW+P++AM  +A  + +  +RVYEVATFYTMF R  +G        +YHL  C 
Sbjct: 106 AQQQHGGWVPVAAMDAIAKIVEVAPIRVYEVATFYTMFNRTKVG--------KYHLLVCG 157

Query: 138 TTPCWLRNSDAILEVI 153
           TTPC +R S  I E +
Sbjct: 158 TTPCMIRGSREIEETL 173


>gi|194748993|ref|XP_001956924.1| GF24324 [Drosophila ananassae]
 gi|190624206|gb|EDV39730.1| GF24324 [Drosophila ananassae]
          Length = 236

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/247 (32%), Positives = 119/247 (48%), Gaps = 66/247 (26%)

Query: 18  RSLSTTQRLNHDALFVHRDTKDDNLD-------VKFEFTPDNKKRAEAIISIYPVGHERA 70
           RS+ + + L+H + +  R  K D LD       ++F+FT +NK+R +A++  YP    + 
Sbjct: 3   RSIRSLRYLHHTSSWF-RAAKLDKLDTCQMRETLEFKFTEENKRRVKALLVWYPEAEWKG 61

Query: 71  AVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQ 130
           A+IPLLD+AQRQ GWL ISA+  VAD + +  M+ YE A FYTMF  KP G        +
Sbjct: 62  ALIPLLDIAQRQQGWLSISAVKAVADVIKIDPMKAYEAAQFYTMFFMKPRG--------K 113

Query: 131 YHLNWCTTTPCWLRNSDAILEVIKKKCNMMLE---------------------------- 162
           Y +  CT+TPC LR  D I  +    C  +L+                            
Sbjct: 114 YVIRVCTSTPCKLRGGDDIYAL----CETILKLKHGETSPDMQFTLKDDYCLGACVNAPV 169

Query: 163 -------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSL 215
                   +DL+ K ++QI++DLK  K P  GP         ++GR+  + E    +TSL
Sbjct: 170 LSVNDDFYEDLDEKSVKQILEDLKNDKLPPSGP---------RNGRY--SSEPKGGLTSL 218

Query: 216 TGEPHGP 222
              P  P
Sbjct: 219 KEPPPPP 225


>gi|195638060|gb|ACG38498.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Zea mays]
          Length = 281

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 88/136 (64%), Gaps = 10/136 (7%)

Query: 19  SLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDL 78
           S+S+T+  +  AL  H D+ ++  D+K+EF+  N K+   I+S YP  ++++ +IPLLDL
Sbjct: 47  SVSSTRPFS-TALNYHLDSPENKPDMKWEFSQANMKKVNEILSHYPSNYKQSGIIPLLDL 105

Query: 79  AQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCT 137
           AQ+QH GW+P++AM  +A  + +  +RVYEVATFYTMF R  +G        +YHL  C 
Sbjct: 106 AQQQHGGWVPVAAMDAIAKIVEVAPIRVYEVATFYTMFNRTKVG--------KYHLLVCG 157

Query: 138 TTPCWLRNSDAILEVI 153
           TTPC +R S  I E +
Sbjct: 158 TTPCMIRGSREIEETL 173


>gi|407768984|ref|ZP_11116361.1| NADH dehydrogenase I subunit E [Thalassospira xiamenensis M-5 = DSM
           17429]
 gi|407287904|gb|EKF13383.1| NADH dehydrogenase I subunit E [Thalassospira xiamenensis M-5 = DSM
           17429]
          Length = 197

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 89/168 (52%), Gaps = 41/168 (24%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQ--HGWLPISAMHYVADFLNLPKMRVYEVATF 111
           +RA+ II+ YP G +++AV+PLLDLAQRQ    W+P  AM Y+AD L +P +RVYEVATF
Sbjct: 2   ERAKKIIAKYPEGRQQSAVMPLLDLAQRQTDGNWVPTVAMDYIADMLEMPAIRVYEVATF 61

Query: 112 YTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER-------- 163
           YTM+   P+G+  I+         CTTTPCWLR S  +++  KK+  + +          
Sbjct: 62  YTMYNLAPVGKNFIQV--------CTTTPCWLRGSADVVDTCKKELGIGIGETTEDGQFT 113

Query: 164 -----------------------QDLEPKDMEQIIDDLKAGKKPAPGP 188
                                  +DL     + I+D LK G+KP  GP
Sbjct: 114 LIEVECLGACVNAPMMQINDDYYEDLTADSTKSILDALKKGEKPKAGP 161


>gi|197105263|ref|YP_002130640.1| NADH dehydrogenase subunit E [Phenylobacterium zucineum HLK1]
 gi|196478683|gb|ACG78211.1| NADH dehydrogenase I, E subunit [Phenylobacterium zucineum HLK1]
          Length = 220

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 46/193 (23%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F F+P+  K+A+A ++ +P G +++AV+P+L L Q+Q GW+   A+  VA+ L +P +RV
Sbjct: 14  FAFSPETLKKAQAWMANFPPGKQQSAVVPVLWLVQKQEGWVSEPAIRAVAELLGMPVIRV 73

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER-- 163
            EVATFYTMF+ +P+G   +  +       C TTPC  R ++A++EV K++      R  
Sbjct: 74  LEVATFYTMFMLEPVGTHALVQV-------CGTTPCQSRGAEALMEVCKRRIGPQSHRSA 126

Query: 164 ----------------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGI 195
                                       +DL P+  E+++DD  AGK P P         
Sbjct: 127 DGKFYWQEVECLGACANAPMAAINDYYYEDLTPESFEKLLDDFAAGKTPPP--------- 177

Query: 196 GSQSGRFCQAREA 208
           GS  GR C A E 
Sbjct: 178 GSAIGRQCSAPEG 190


>gi|222148278|ref|YP_002549235.1| NADH dehydrogenase subunit E [Agrobacterium vitis S4]
 gi|221735266|gb|ACM36229.1| NADH dehydrogenase I chain E [Agrobacterium vitis S4]
          Length = 266

 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 107/219 (48%), Gaps = 47/219 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D      F F+ +N   AEA I  YP G +++AVIPLL  AQ Q GW+  + 
Sbjct: 1   MSVRRLAEDQFQPASFAFSEENAVWAEATIRKYPEGRQQSAVIPLLMRAQEQDGWVTKAT 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + +VAD L++P +RV EVATFYT F  KP+G        + H+  C TTPC LR S+ ++
Sbjct: 61  IEFVADKLDMPYIRVLEVATFYTQFQLKPVG-------TKAHIQVCGTTPCMLRGSEELM 113

Query: 151 EVIKKKCN-MMLER------------------------------QDLEPKDMEQIIDDLK 179
           ++ KKK +   LER                              +DL P+ +E+IID  +
Sbjct: 114 KICKKKIHPEPLERNSTGTLSWEEVECQGACVNAPMVIIFKDAYEDLTPERLEEIIDAFE 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGE 218
           AGK       G     G Q  R   A E    +TSLT E
Sbjct: 174 AGK-------GVEVKTGPQIERVFSAPEG--GLTSLTEE 203


>gi|452964820|gb|EME69853.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Magnetospirillum sp.
           SO-1]
          Length = 202

 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 92/174 (52%), Gaps = 39/174 (22%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTP+  ++A+A I+ YP G +++AV+PLLDLAQRQ GW+  +AM  +A+ L++  +RV
Sbjct: 11  FAFTPEYLEKAKAFIAKYPAGRQQSAVMPLLDLAQRQEGWVSRAAMEVIAEMLDMAPIRV 70

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM------ 159
            EVATFYTM+ RKP+G         +H+  CT  PC LR SD ++   K    +      
Sbjct: 71  EEVATFYTMYNRKPVG--------TFHVQVCTNLPCMLRGSDDVVAAAKATLGVEFGDMT 122

Query: 160 --------------------MLE-----RQDLEPKDMEQIIDDLKAGKKPAPGP 188
                               M++      +DL  +  + +++  K G+ P PGP
Sbjct: 123 GDGKFTLSEVECLGACVNAPMMQINDDYYEDLTAESTKAVLEAFKRGETPKPGP 176


>gi|412992342|emb|CCO20055.1| predicted protein [Bathycoccus prasinos]
          Length = 316

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 54/127 (42%), Positives = 84/127 (66%), Gaps = 9/127 (7%)

Query: 24  QRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH 83
           +RL    L VHRD+ ++N  +K+EF+ +N+ + + I+  YP  ++R+A+IPLLD+AQ+Q+
Sbjct: 62  ERLYSVGLMVHRDSAENNSSLKWEFSKENETKVQTILKRYPPNYKRSAMIPLLDVAQQQN 121

Query: 84  -GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCW 142
            G+L +  M+++A+ L +  +RVYEVATFY+MF R  +G         YH+  C TTPC 
Sbjct: 122 AGYLTVPVMNHIAELLEVAPIRVYEVATFYSMFNRSKVG--------SYHVMVCGTTPCM 173

Query: 143 LRNSDAI 149
           LR S  I
Sbjct: 174 LRGSRDI 180


>gi|195591030|ref|XP_002085246.1| GD12420 [Drosophila simulans]
 gi|194197255|gb|EDX10831.1| GD12420 [Drosophila simulans]
          Length = 238

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 105/210 (50%), Gaps = 50/210 (23%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
           +KFEF+ DN++R +A+++ YP    + A++PLLD+AQRQ GWL ISA+  VA+ + +  M
Sbjct: 32  LKFEFSKDNQRRVKALLAWYPQAEWKGALLPLLDIAQRQQGWLSISAVQAVAETIKIDPM 91

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER 163
             +E A FYTMF  KP G        +Y ++ CT+TPC LR  D I E  KK  N+   +
Sbjct: 92  EAFEAAQFYTMFFMKPRG--------KYVVSVCTSTPCKLRGGDEIFEACKKTLNLEHGQ 143

Query: 164 -------------------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYT 192
                                          +DL+ K + +I+ DL+  K P  GP    
Sbjct: 144 TTPDMQFTLKEDYCMGACVNAPVLAVNDDMYEDLDEKSLAKILADLRNDKLPPAGP---- 199

Query: 193 SGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
                ++GRF  A E    +T+L  +P  P
Sbjct: 200 -----RNGRF--ACEPKGGLTTLKIKPPPP 222


>gi|300121826|emb|CBK22400.2| subunit NuoE (NDUFV2) [Blastocystis hominis]
          Length = 267

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 10/158 (6%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNH-DALFVHRDTKDDNLDVKFEFTPDNKKRAEAI 59
           M   L  ++S VV  +  +  T  R  H      H D+ D+N+D  F+FT +N +R   I
Sbjct: 1   MFRALTSVSSRVVATSKFAPFTAVRAMHFGPTKQHYDSPDNNVDTPFDFTAENYRRVHEI 60

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118
           +  YP  ++++AV+PLLDLAQRQ G +LP++AM+ VA+ L +P ++VYEV TFYTM+   
Sbjct: 61  MKRYPKNYKQSAVMPLLDLAQRQCGNYLPLAAMNKVAEILEMPPVKVYEVVTFYTMY--- 117

Query: 119 PIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
                R + + ++ +  C TTPC L  S+ I + ++K+
Sbjct: 118 -----RTEKVGKFFIQACGTTPCMLCGSEEIFQTLEKE 150


>gi|195328340|ref|XP_002030873.1| GM24346 [Drosophila sechellia]
 gi|194119816|gb|EDW41859.1| GM24346 [Drosophila sechellia]
          Length = 241

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 103/210 (49%), Gaps = 50/210 (23%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
           +KFEF+ DN++R +A+++ YP    + A++PLLD+AQRQ GWL ISA+  VA+ + +  M
Sbjct: 35  LKFEFSKDNQRRVKALLAWYPQAEWKGALLPLLDIAQRQQGWLSISAVQAVAENIKIDPM 94

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER 163
             +E A FYTMF  KP G        +Y ++ CT+TPC LR  D I E  KK  N+   +
Sbjct: 95  EAFEAAQFYTMFFMKPRG--------KYVVSVCTSTPCKLRGGDEIFEACKKTLNLEHGQ 146

Query: 164 -------------------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYT 192
                                          +DL+ K +  I+ DL+  K P  GP    
Sbjct: 147 TTPDMQFTLKEDYCMGACVNAPVLAVNDDMYEDLDEKSLANILADLRNDKLPPAGP---- 202

Query: 193 SGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
                ++GRF  A E    +T+L   P  P
Sbjct: 203 -----RNGRF--ASEPKGGLTTLKIPPPPP 225


>gi|319408583|emb|CBI82238.1| NADH dehydrogenase I, E subunit [Bartonella schoenbuchensis R1]
          Length = 217

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 113/222 (50%), Gaps = 47/222 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R   D +  ++F FT +N+  A+  I+ YPVG E++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLADDAHQPLEFSFTKENQVWAQNTIAKYPVGREQSAVIPLLMRAQEQEGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + YVA  L++  +RV E+ATFYT F  KP+G        + H+  C TTPC LR S  ++
Sbjct: 61  IEYVAQMLSMAYIRVLEIATFYTQFQLKPVG-------TKAHIQVCGTTPCMLRGSGELI 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
           +V +KK +                            +M+ +   +DL  + +E+IID  +
Sbjct: 114 KVCQKKIHSEPFITNKDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFE 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
           AGK            +G Q+GR  ++ E  + +TSL  E  G
Sbjct: 174 AGKNS-------DIAVGPQNGR--KSSEPINGLTSLIDENEG 206


>gi|426401086|ref|YP_007020058.1| NADH-quinone oxidoreductase subunit E [Candidatus Endolissoclinum
           patella L2]
 gi|425857754|gb|AFX98790.1| NADH-quinone oxidoreductase, E subunit [Candidatus Endolissoclinum
           patella L2]
          Length = 221

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 58/128 (45%), Positives = 83/128 (64%), Gaps = 10/128 (7%)

Query: 35  RDTKDDNLDVK-FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMH 92
           ++  DDNL  K FE+T +++   +  +  YPVG + +AVIPLL++AQRQ+  WLPI A+ 
Sbjct: 4   KEIADDNLQPKSFEWTDESQLMIDNTLKQYPVGRQASAVIPLLNIAQRQNSNWLPIKAIE 63

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV 152
            +AD L++P++RV EVATFYTMF   P+G        ++ L  CTTTPCWLR S  ++  
Sbjct: 64  LIADTLDMPRIRVLEVATFYTMFNLIPVG--------KWFLQPCTTTPCWLRGSHEVMSC 115

Query: 153 IKKKCNMM 160
           IK K  + 
Sbjct: 116 IKDKLGLF 123


>gi|224005697|ref|XP_002291809.1| NADH dehydrogenase [Thalassiosira pseudonana CCMP1335]
 gi|220972328|gb|EED90660.1| NADH dehydrogenase [Thalassiosira pseudonana CCMP1335]
          Length = 261

 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 108/222 (48%), Gaps = 41/222 (18%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           MLS    L+  +      +   T+ + H   F H +T D+  +  F+FT +N  R   I+
Sbjct: 1   MLSAARHLSRRLPSVVAATSGQTRSMGHAQSF-HINTPDNTPETYFDFTEENYHRVNKIL 59

Query: 61  SIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           S YP  ++++ +IPLLDLAQRQH GWLP++AM  VA  +     RVYEVA+FYTMF R  
Sbjct: 60  SKYPANYKQSGIIPLLDLAQRQHGGWLPVAAMDKVAQIVGAAPSRVYEVASFYTMFNRTK 119

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM-------------------- 159
           +G        +Y +  C TTPC +  S+ I + I+K   +                    
Sbjct: 120 VG--------KYFIQLCGTTPCMICGSEDIKKTIEKHLGIKNGETTKDGMFTLLEVECLG 171

Query: 160 ------MLERQD-----LEPKDMEQIIDDLKAGKKPAPGPSG 190
                 M++  D     L  K + ++++  KAGK PA G  G
Sbjct: 172 ACANAPMIQLNDDYYECLNAKSIVELLEACKAGKPPAMGKWG 213


>gi|46202358|ref|ZP_00208486.1| COG1905: NADH:ubiquinone oxidoreductase 24 kD subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 202

 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 39/174 (22%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTP+  ++A+  I+ YP G +++AV+PLLDLAQRQ GW+  +AM  +A+ L++  +RV
Sbjct: 11  FAFTPEYLEKAKVFIAKYPAGRQQSAVMPLLDLAQRQEGWVSRAAMEVIAEMLDMAPIRV 70

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER-- 163
            EVATFYTM+ RKP+G         +H+  CT  PC LR SD ++   K    +      
Sbjct: 71  EEVATFYTMYNRKPVG--------TFHVQVCTNLPCMLRGSDEVVAAAKAALGVEFGEMT 122

Query: 164 -----------------------------QDLEPKDMEQIIDDLKAGKKPAPGP 188
                                        +DL  +  + +++  K G+ P PGP
Sbjct: 123 ADGKFTLSEVECLGACVNAPMMQINDDYYEDLSAETTKAVLEAFKRGETPKPGP 176


>gi|339319421|ref|YP_004679116.1| NADH:ubiquinone oxidoreductase subunit E [Candidatus Midichloria
           mitochondrii IricVA]
 gi|338225546|gb|AEI88430.1| NADH:ubiquinone oxidoreductase subunit E [Candidatus Midichloria
           mitochondrii IricVA]
          Length = 200

 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 98/196 (50%), Gaps = 49/196 (25%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           FEFT  N K  E I+  YP  ++R+AV+PLL LAQ Q+  W+P +AM Y+A  L+L  M+
Sbjct: 16  FEFTKQNIKEVEEILKKYPNQNKRSAVMPLLHLAQEQNNNWVPKAAMDYIAKLLDLTPMQ 75

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER- 163
           VYEVA FYTM+ ++P+G+  I+         C TTPCWL  S+ I E+ KKK  + +   
Sbjct: 76  VYEVANFYTMYNKQPVGDNLIQV--------CRTTPCWLSGSNKITEICKKKLGIDIGET 127

Query: 164 ------------------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTS 193
                                         +DL P+ M+ +++ +   +K A        
Sbjct: 128 TNDKQFTLVEVECLGACVNAPVVQINNDYYEDLSPEKMDAVLESITNNRKIAH------- 180

Query: 194 GIGSQSGRFCQAREAY 209
             GSQSGR   A E +
Sbjct: 181 --GSQSGRLNSAPEGW 194


>gi|381167340|ref|ZP_09876548.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           (NDH-1, chain E) [Phaeospirillum molischianum DSM 120]
 gi|380683648|emb|CCG41360.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           (NDH-1, chain E) [Phaeospirillum molischianum DSM 120]
          Length = 202

 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 75/110 (68%), Gaps = 8/110 (7%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
             F FTP++ ++A A I+ YP G +++AV+PLLDLAQRQ GW+  +A+  +A+ L +  +
Sbjct: 9   AAFAFTPESAEQARAFIARYPAGRQQSAVMPLLDLAQRQEGWVSRAAIEMIANMLEMAPI 68

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVI 153
           +V EVATFYTM+ R+P+G        ++H+  CT  PC LR SDA+++ +
Sbjct: 69  QVEEVATFYTMYNRRPVG--------RFHVQICTNLPCMLRGSDAVIDTV 110


>gi|302665557|ref|XP_003024388.1| hypothetical protein TRV_01455 [Trichophyton verrucosum HKI 0517]
 gi|291188440|gb|EFE43777.1| hypothetical protein TRV_01455 [Trichophyton verrucosum HKI 0517]
          Length = 378

 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 108/220 (49%), Gaps = 47/220 (21%)

Query: 34  HRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHY 93
           HR+T  +N  + F+F+ +N    + I+  YP  +++AAV+PLLDL QRQHG+  IS M+ 
Sbjct: 154 HRNTPTNNPTIPFKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYTSISVMNE 213

Query: 94  VADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL---------- 143
           VA  L +P MRVYEVATFYTM+ R+P+G        +Y +  CTTTPC L          
Sbjct: 214 VARMLEMPPMRVYEVATFYTMYNREPVG--------KYFVQICTTTPCQLGGCGSDKIVK 265

Query: 144 -------------RNSDAILEVIKKKC-----NMMLER------QDLEPKDMEQIIDDLK 179
                           D I  V++ +C     N  + +      +DL P+   Q++D LK
Sbjct: 266 AITEHLGVSSHGATTPDGIFTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALK 325

Query: 180 AGKKPAPG---PSGYTSGIGSQSGRFCQAREAYHDMTSLT 216
           A    A     PS      G  SGR     E    +TSLT
Sbjct: 326 ASAVAAENGTQPSVKVPPPGPLSGR--HTCENSAGLTSLT 363


>gi|85708750|ref|ZP_01039816.1| NADH Dehydrogenase I Chain E [Erythrobacter sp. NAP1]
 gi|85690284|gb|EAQ30287.1| NADH Dehydrogenase I Chain E [Erythrobacter sp. NAP1]
          Length = 222

 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/118 (45%), Positives = 77/118 (65%), Gaps = 15/118 (12%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADFL 98
           FE++ +NKK+A+  I+ YP G +++AV+ LLDL QRQ        GWLP+  + Y+AD+L
Sbjct: 20  FEWSKENKKKADREIAKYPEGRQKSAVMALLDLGQRQVGEETDTQGWLPLPVIEYIADYL 79

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           ++P +RV EVATFY M+  KP+G        +YH+  C TTPC LR SD I+   KK+
Sbjct: 80  DMPVIRVLEVATFYFMYNMKPVG--------KYHVQVCGTTPCMLRGSDDIISACKKR 129


>gi|402850664|ref|ZP_10898857.1| NADH-ubiquinone oxidoreductase chain E [Rhodovulum sp. PH10]
 gi|402499101|gb|EJW10820.1| NADH-ubiquinone oxidoreductase chain E [Rhodovulum sp. PH10]
          Length = 251

 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 110/223 (49%), Gaps = 50/223 (22%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-HGWLPIS 89
           + V R    D    +F FT DN   A+  I+ YP G + +AVIPLL  AQ Q  GW+P  
Sbjct: 1   MSVRRLAPADQQPKEFAFTGDNLDWAKGQIAKYPEGRQASAVIPLLWRAQEQAGGWVPQK 60

Query: 90  AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           A+ +VAD L +  +RV EVATFYTMF  +P+G        ++H+  C TTPC LR +DA+
Sbjct: 61  AIEHVADLLGMAYIRVLEVATFYTMFNLEPVG--------KHHVQLCGTTPCVLRGADAL 112

Query: 150 LEVIKKK------------------------CNMMLER------QDLEPKDMEQIIDDLK 179
            +V K+K                         N  + +      +DL P++  +++DDL 
Sbjct: 113 KKVCKEKIGEEHHVTADGKLSWTEVECLGACVNAPMAQIGYDYYEDLTPENFAKLLDDLA 172

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
           AG++ A          GSQ GR C A E     T+LT  P  P
Sbjct: 173 AGRQVA---------TGSQIGRQCSAPEG--GPTTLTDLPERP 204


>gi|359401539|ref|ZP_09194507.1| NADH dehydrogenase I subunit E [Novosphingobium pentaromativorans
           US6-1]
 gi|357597214|gb|EHJ58964.1| NADH dehydrogenase I subunit E [Novosphingobium pentaromativorans
           US6-1]
          Length = 222

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/118 (48%), Positives = 76/118 (64%), Gaps = 15/118 (12%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADFL 98
           F +T +N ++A+ I++ YP G +R+AV+PLLDLAQRQ        GWLPI  M YVA  L
Sbjct: 20  FAWTAENAEKAKDIVARYPAGRQRSAVMPLLDLAQRQVGAEESTQGWLPIPVMEYVAAQL 79

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           ++P +RV EVATFYTM+   PIG        ++H+  C TTPC LR SD I+   KK+
Sbjct: 80  DMPIIRVVEVATFYTMYNIAPIG--------RFHVQVCGTTPCMLRGSDDIIAACKKR 129


>gi|395784246|ref|ZP_10464085.1| NADH-quinone oxidoreductase subunit E 1 [Bartonella melophagi K-2C]
 gi|395424001|gb|EJF90189.1| NADH-quinone oxidoreductase subunit E 1 [Bartonella melophagi K-2C]
          Length = 220

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 114/224 (50%), Gaps = 51/224 (22%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R   D +  ++F FT +N+  A+  I+ YPVG E++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLADDAHQPLEFSFTKENQVWAQNTIAKYPVGREQSAVIPLLMRAQEQEGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + Y+A  L++  +RV E+ATFYT F  KP+G        + H+  C TTPC LR S  ++
Sbjct: 61  IEYIAQMLSMAYIRVLEIATFYTQFQLKPVG-------TKAHIQVCGTTPCMLRGSGELI 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
           +V +KK +                            +M+ +   +DL  + +E+IID  +
Sbjct: 114 KVCQKKIHSEPFITNKDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFE 173

Query: 180 AGKKP--APGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
           AGK    A GP         Q+GR  ++ E  + +TSL  E  G
Sbjct: 174 AGKNSDIAAGP---------QNGR--KSSEPINGLTSLIDENEG 206


>gi|334142124|ref|YP_004535331.1| NADH dehydrogenase I subunit E [Novosphingobium sp. PP1Y]
 gi|333940155|emb|CCA93513.1| NADH dehydrogenase I subunit E [Novosphingobium sp. PP1Y]
          Length = 222

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/118 (48%), Positives = 76/118 (64%), Gaps = 15/118 (12%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADFL 98
           F +T +N ++A+ I++ YP G +R+AV+PLLDLAQRQ        GWLPI  M YVA  L
Sbjct: 20  FAWTAENAEKAKDIVARYPAGRQRSAVMPLLDLAQRQVGAEENTQGWLPIPVMEYVAAQL 79

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           ++P +RV EVATFYTM+   PIG        ++H+  C TTPC LR SD I+   KK+
Sbjct: 80  DMPIIRVVEVATFYTMYNIAPIG--------RFHVQVCGTTPCMLRGSDDIIAACKKR 129


>gi|452824203|gb|EME31207.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Galdieria
           sulphuraria]
          Length = 276

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/127 (42%), Positives = 81/127 (63%), Gaps = 9/127 (7%)

Query: 34  HRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMH 92
           H D + +  +  F+FT +N ++ E I+  YP  ++ +AVI LLDL QRQ  GW+P++AM+
Sbjct: 61  HVDREGNTAETTFDFTDENYEKIENILKKYPRNYKSSAVIALLDLVQRQCGGWIPLAAMN 120

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV 152
            VA  L +P +RVYEV TFY+MF R+PIG        ++++  C TTPC +R +  IL  
Sbjct: 121 QVAKILEMPPIRVYEVVTFYSMFYREPIG--------KFNVQVCCTTPCMIRGAYDILRA 172

Query: 153 IKKKCNM 159
           I+ K N+
Sbjct: 173 IQSKFNL 179


>gi|312116349|ref|YP_004013945.1| NADH-quinone oxidoreductase subunit E [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311221478|gb|ADP72846.1| NADH-quinone oxidoreductase, E subunit [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 341

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/201 (35%), Positives = 97/201 (48%), Gaps = 48/201 (23%)

Query: 39  DDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADF 97
           D N    FEFTP+N   A+  I  YP G  +AAV+PLL  AQ Q+  WLP  A+ YV D 
Sbjct: 7   DPNQPSDFEFTPENLAWAKEQIKKYPEGRHQAAVLPLLWRAQEQNDRWLPEPAIRYVGDL 66

Query: 98  LNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKC 157
           L +P +RVYEVATFY+MF   P+G        +YH+  C TTPC LR ++ I +V K++ 
Sbjct: 67  LGMPYIRVYEVATFYSMFNLSPVG--------RYHVQVCGTTPCMLRGAEDIKKVCKREI 118

Query: 158 NMMLE------------------------------RQDLEPKDMEQIIDDLKAGKKPAPG 187
               E                               +DL P++ E ++  L+ G++  P 
Sbjct: 119 GDEREVTPEGVFSWVEVECLGACVNAPMVQINDDYYEDLTPENFEAVLSGLRRGREVKP- 177

Query: 188 PSGYTSGIGSQSGRFCQAREA 208
                   GSQ GR C A E 
Sbjct: 178 --------GSQIGRQCSAPEG 190


>gi|294677058|ref|YP_003577673.1| NADH-quinone oxidoreductase subunit E [Rhodobacter capsulatus SB
           1003]
 gi|1938238|emb|CAA71230.1| complex I 24kDa subunit [Rhodobacter capsulatus]
 gi|2182078|emb|CAA71011.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Rhodobacter
           capsulatus]
 gi|3282563|gb|AAC24989.1| NUOE [Rhodobacter capsulatus]
 gi|294475878|gb|ADE85266.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter capsulatus SB
           1003]
          Length = 389

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/202 (36%), Positives = 98/202 (48%), Gaps = 49/202 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTP N+  AEA I+ YP G + +AVIPLL  AQ Q GWL   A+ YVAD L++P +RV
Sbjct: 13  FAFTPANRAWAEAQITKYPEGRQASAVIPLLFRAQEQEGWLTKPAIEYVADLLDMPYIRV 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVA+FY MF  +P G          H+  C TT C +  S+ ++EV K+K         
Sbjct: 73  LEVASFYFMFQLQPTGS-------VAHIQVCGTTSCMIMGSENLIEVCKRKISHHPHALS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL    +E++IDDL AGK P P        
Sbjct: 126 ADGKFSWEEVECLGACANAPMAQIGKDYFEDLTEAGLERLIDDLAAGKAPVP-------- 177

Query: 195 IGSQSGRFCQAREAYHDMTSLT 216
            GS+ GRF    E    +TS T
Sbjct: 178 -GSEIGRF--GAEPATGLTSCT 196


>gi|326502384|dbj|BAJ95255.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326513656|dbj|BAJ87847.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326528649|dbj|BAJ97346.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326532778|dbj|BAJ89234.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 277

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/140 (42%), Positives = 87/140 (62%), Gaps = 13/140 (9%)

Query: 24  QRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH 83
            R    AL  H D+ D+N ++ +EFT  N ++   I+S YP  ++++ +IP+LDLAQ+QH
Sbjct: 47  SRTFSSALNYHIDSPDNNPNMPWEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQH 106

Query: 84  -GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCW 142
            GW+P++AM  +A  + +  +RVYEVATFY+MF R  +G        +YHL  C TTPC 
Sbjct: 107 GGWVPVAAMDAIAKIVGVAPIRVYEVATFYSMFNRTKVG--------KYHLLVCGTTPCM 158

Query: 143 LRNS----DAILEVIKKKCN 158
           +R S    DA+LE +  K N
Sbjct: 159 IRGSRDIEDALLEHLGVKRN 178


>gi|85374160|ref|YP_458222.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit
           [Erythrobacter litoralis HTCC2594]
 gi|84787243|gb|ABC63425.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit
           [Erythrobacter litoralis HTCC2594]
          Length = 222

 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/210 (35%), Positives = 102/210 (48%), Gaps = 50/210 (23%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADFL 98
           F FT  NK  A+  I+ YP G +R+AV+PLL LAQ Q        GWLP+  M YVAD+L
Sbjct: 20  FVFTAANKAEADKHIAKYPEGRQRSAVMPLLFLAQAQVGEETNTQGWLPLPVMEYVADYL 79

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN 158
           ++P +RV EVATFY M+  +P+G        +YH+  C TTPC LR SD I+   KK+  
Sbjct: 80  DMPVIRVVEVATFYFMYNLQPVG--------KYHVQVCGTTPCMLRGSDEIIAACKKR-G 130

Query: 159 MMLER-------------------------------QDLEPKDMEQIIDDLKAGKKPAPG 187
           M   R                               +DL P+ ++ ++D L AG++P  G
Sbjct: 131 MEKGRVSADGLWTLTEVECMGNCATAPMVQINDDNYEDLTPERLDAVLDALAAGEQPKTG 190

Query: 188 ---PSGYTSGIGSQSGRFCQAREAYHDMTS 214
              P  +TS          +  +A HD  S
Sbjct: 191 TQEPGRHTSEPLGGPTTLKEMVDANHDYRS 220


>gi|163793191|ref|ZP_02187167.1| NADH-quinone oxidoreductase chain E [alpha proteobacterium BAL199]
 gi|159181837|gb|EDP66349.1| NADH-quinone oxidoreductase chain E [alpha proteobacterium BAL199]
          Length = 223

 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/123 (43%), Positives = 80/123 (65%), Gaps = 9/123 (7%)

Query: 38  KDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVAD 96
           +D +    F +TP ++K+   I++ YP G + +AV+PLLDLAQRQH  W+P++A+  +A 
Sbjct: 8   EDKDQPASFTWTPQSEKQIAVILAKYPEGRQSSAVLPLLDLAQRQHDNWIPLAAIDAIAA 67

Query: 97  FLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
            L++ ++RV EVATFYTM+   P+G        ++ L  CTTTPCWLR SD ++  IK K
Sbjct: 68  RLDMARIRVLEVATFYTMYNLAPVG--------KWFLQACTTTPCWLRGSDQMMRCIKDK 119

Query: 157 CNM 159
             +
Sbjct: 120 LGL 122


>gi|384263106|ref|YP_005418294.1| NADH dehydrogenase (Ubiquinone) [Rhodospirillum photometricum DSM
           122]
 gi|378404208|emb|CCG09324.1| NADH dehydrogenase (Ubiquinone) [Rhodospirillum photometricum DSM
           122]
          Length = 198

 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 92/187 (49%), Gaps = 48/187 (25%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F+F+P+N+++A AI++ YP G ER+ V+PLLDLAQRQ GW+  + +  VA +   P +RV
Sbjct: 10  FQFSPENEEKARAILAKYPKGRERSGVLPLLDLAQRQQGWIDRAVIETVATWTQTPPLRV 69

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER-- 163
            E A+FYTMF  K +G         +H+  CT   CWLR SD IL  +K +  + + +  
Sbjct: 70  LEAASFYTMFRDKKVG--------HHHVEVCTNISCWLRGSDEILRALKDELGLDIGQMT 121

Query: 164 -----------------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                                        +DL  +    +I  LKAG+   P        
Sbjct: 122 ADGLFSVAEAECLGACVNAPMVQIGDHYYEDLTYESARALIQKLKAGEPVTP-------- 173

Query: 195 IGSQSGR 201
            GSQSGR
Sbjct: 174 -GSQSGR 179


>gi|379023055|ref|YP_005299716.1| NADH dehydrogenase subunit E [Rickettsia canadensis str. CA410]
 gi|376323993|gb|AFB21234.1| NADH dehydrogenase subunit E [Rickettsia canadensis str. CA410]
          Length = 167

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 73/112 (65%), Gaps = 9/112 (8%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F F   N   AE I+  YP   +R+A++PLLDLAQRQ+G WL I A+ YVA+ L +  MR
Sbjct: 8   FIFDKKNLNLAEDIVKKYPPHGKRSAILPLLDLAQRQNGGWLSIPAIEYVANMLGIAYMR 67

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
            YEVATFYTMF  KPIG        ++H+  CTTTPCWLR S  I++  ++K
Sbjct: 68  AYEVATFYTMFNLKPIG--------KHHIKVCTTTPCWLRGSSDIIKTCEQK 111


>gi|157803907|ref|YP_001492456.1| NADH dehydrogenase subunit E [Rickettsia canadensis str. McKiel]
 gi|157785170|gb|ABV73671.1| NADH dehydrogenase I chain E [Rickettsia canadensis str. McKiel]
          Length = 167

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 73/112 (65%), Gaps = 9/112 (8%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F F   N   AE I+  YP   +R+A++PLLDLAQRQ+G WL I A+ YVA+ L +  MR
Sbjct: 8   FIFDKKNLNLAEDIVKKYPPHGKRSAILPLLDLAQRQNGGWLSIPAIEYVANMLGIAYMR 67

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
            YEVATFYTMF  KPIG        ++H+  CTTTPCWLR S  I++  ++K
Sbjct: 68  AYEVATFYTMFNLKPIG--------KHHIKVCTTTPCWLRGSSDIIKTCEQK 111


>gi|3892051|gb|AAC78260.1| predicted NADH dehydrogenase 24 kD subunit [Arabidopsis thaliana]
 gi|7269018|emb|CAB80751.1| predicted NADH dehydrogenase 24 kD subunit [Arabidopsis thaliana]
          Length = 244

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 79/117 (67%), Gaps = 9/117 (7%)

Query: 34  HRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMH 92
           H D+ D+  D+ +EF+  N+ + + I+S YP  ++++AVIPLLDLAQ+Q+ GWLP+SAM+
Sbjct: 24  HLDSPDNKPDLPWEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLAQQQNGGWLPVSAMN 83

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
            VA  + +  +RVYEVATFY+MF R  +G        +YHL  C TTPC +R S  I
Sbjct: 84  AVAKVIEVAPIRVYEVATFYSMFNRAKVG--------KYHLLVCGTTPCMIRGSRDI 132


>gi|326387457|ref|ZP_08209066.1| NADH-quinone oxidoreductase, E subunit [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208113|gb|EGD58921.1| NADH-quinone oxidoreductase, E subunit [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 222

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/113 (47%), Positives = 75/113 (66%), Gaps = 15/113 (13%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADF 97
            F +T +N ++A+ I++ YP G +R+AV+PLLDLAQRQ        GWLP+  M YVA +
Sbjct: 19  SFAWTAENAEKAKEIVARYPAGRQRSAVMPLLDLAQRQVGAEENTQGWLPMPVMEYVARY 78

Query: 98  LNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           L++P +RV EVATFYTM+  +P+G        ++H+  C TTPC LR SD IL
Sbjct: 79  LDMPIIRVLEVATFYTMYNIQPVG--------RFHVQVCGTTPCMLRGSDDIL 123


>gi|145544859|ref|XP_001458114.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425933|emb|CAK90717.1| unnamed protein product [Paramecium tetraurelia]
          Length = 263

 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 121/236 (51%), Gaps = 62/236 (26%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLD-VKFEFTPDNKKRAEAI 59
           M+   A+LA    R++++  S         +FV    +DDN D V F+FT +N K+ EAI
Sbjct: 1   MIQKFAQLAQ---RKSIQRFSN--------IFVAHRNRDDNSDSVPFDFTDENYKKIEAI 49

Query: 60  ISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118
           ++ +P   +++  IPLL LAQ+Q + +L +SAM  +A  L +P+M VYE A+FY+MF R+
Sbjct: 50  LAKFPSNEKKSGTIPLLMLAQKQNNNFLSLSAMKKIAKILEIPEMDVYETASFYSMFNRE 109

Query: 119 PIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM------------------- 159
            +G        ++HL  C TTPC L  S  I++ I++K N+                   
Sbjct: 110 RVG--------KFHLQVCGTTPCQLCGSKDIIKTIEQKLNIKNGETTADGLYTLQEVECL 161

Query: 160 -------MLE------RQDLEPKDMEQIIDDLK---------AGKKPAPGPSGYTS 193
                  M++       +DL P++  ++++DLK          G+K A GP G T+
Sbjct: 162 GACANAPMMQVNNEWVYEDLTPENTLKLLEDLKNGTDKKGPQNGRKNAEGPQGRTT 217


>gi|124088387|ref|XP_001347081.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Paramecium
           tetraurelia strain d4-2]
 gi|145474399|ref|XP_001423222.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|50057470|emb|CAH03454.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative [Paramecium
           tetraurelia]
 gi|124390282|emb|CAK55824.1| unnamed protein product [Paramecium tetraurelia]
          Length = 263

 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 121/236 (51%), Gaps = 62/236 (26%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLD-VKFEFTPDNKKRAEAI 59
           M+   A+LA          L + QR +  ++FV    +DDN D V F+FT +N K+ EAI
Sbjct: 1   MIQKFAQLAQ---------LKSIQRFS--SIFVAHRNRDDNSDSVPFDFTDENYKKIEAI 49

Query: 60  ISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118
           ++ +P   +++  IPLL LAQ+Q + +L +SAM  +A  L +P+M V+E A+FY+MF R+
Sbjct: 50  LTKFPSNEKKSGTIPLLMLAQKQNNNFLSLSAMKKIAKILEIPEMDVFETASFYSMFNRE 109

Query: 119 PIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM------------------- 159
            +G        ++HL  C TTPC L  S  I++ I++K N+                   
Sbjct: 110 RVG--------KFHLQVCGTTPCQLCGSKDIIKTIEQKLNIKNGETTADGLYTLQEVECL 161

Query: 160 -------MLE------RQDLEPKDMEQIIDDLK---------AGKKPAPGPSGYTS 193
                  M++       +DL P++  ++++DLK          G+K A GP G T+
Sbjct: 162 GACANAPMMQVNNEWVYEDLTPENTLKLLEDLKNGTDKKGPQNGRKNAEGPQGRTT 217


>gi|88608494|ref|YP_506514.1| NADH dehydrogenase subunit E [Neorickettsia sennetsu str. Miyayama]
 gi|88600663|gb|ABD46131.1| NADH dehydrogenase I, E subunit [Neorickettsia sennetsu str.
           Miyayama]
          Length = 181

 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 74/113 (65%), Gaps = 9/113 (7%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKM 103
           KF F+ +N +    I++ YP   +R+AV+PLL L QRQH  W+PI+AM +VA  L LP +
Sbjct: 23  KFCFSEENSREVARILAKYPASRKRSAVLPLLHLVQRQHENWIPIAAMDHVAQLLGLPVI 82

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           +VYEVA+FY+MF   P+G+  I+         C TTPCWLR SD ++E  K++
Sbjct: 83  KVYEVASFYSMFNTAPVGKHTIRV--------CRTTPCWLRGSDCLIEAAKRE 127


>gi|325184622|emb|CCA19114.1| NADH dehydrogenase flavoprotein 2 putative [Albugo laibachii Nc14]
          Length = 267

 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/128 (43%), Positives = 84/128 (65%), Gaps = 10/128 (7%)

Query: 30  ALFV-HRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLP 87
           A+F  HRDT+D+  +  F+FT +N  +  AI+  YP   + +A+IPLLDLAQRQH GWLP
Sbjct: 30  AIFAQHRDTRDNTKESSFDFTTENYTKVHAILDRYPENFKASAIIPLLDLAQRQHGGWLP 89

Query: 88  ISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSD 147
           ++AM+ VA  +++  ++VYEVATFYTMF R+ +G        ++ +  C TTPC +  S+
Sbjct: 90  LAAMNKVARIVDVKPIQVYEVATFYTMFNREKVG--------KFFIQLCGTTPCMICGSE 141

Query: 148 AILEVIKK 155
            I   I++
Sbjct: 142 EIKHTIEE 149


>gi|452750667|ref|ZP_21950414.1| NADH-ubiquinone oxidoreductase chain E [alpha proteobacterium
           JLT2015]
 gi|451961861|gb|EMD84270.1| NADH-ubiquinone oxidoreductase chain E [alpha proteobacterium
           JLT2015]
          Length = 220

 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/193 (36%), Positives = 98/193 (50%), Gaps = 54/193 (27%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADFL 98
           F++T +N K A   I+ YP G +++AV+ LLDLAQRQ        GWLPI  + +VA  L
Sbjct: 28  FQWTEENAKSAARQIAKYPEGRQQSAVMGLLDLAQRQIGVQTETQGWLPIPVIEFVAKQL 87

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK-- 156
           ++P +RVYEVA+FYTM+   P+G        +YH+  C TTPC LR SD ++  + +K  
Sbjct: 88  SMPYIRVYEVASFYTMYNLAPVG--------KYHVQLCGTTPCMLRGSDDVMRALNEKGI 139

Query: 157 ---------------------CNM--MLE-----RQDLEPKDMEQIIDDLKAGKKPAPGP 188
                                C    ML+      +DL+     +IID L AG +P P  
Sbjct: 140 RKGKTTPDGLFTLTEVECMGNCANAPMLQINDDNYEDLDADSTARIIDALAAGDRPQP-- 197

Query: 189 SGYTSGIGSQSGR 201
                  GSQ+GR
Sbjct: 198 -------GSQTGR 203


>gi|118590034|ref|ZP_01547438.1| NADH dehydrogenase subunit E [Stappia aggregata IAM 12614]
 gi|118437531|gb|EAV44168.1| NADH dehydrogenase subunit E [Stappia aggregata IAM 12614]
          Length = 437

 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 101/209 (48%), Gaps = 49/209 (23%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMR 104
           F FT  N   A+ +I  YP G + +AVIPLL  AQ Q+ GW+   A+ Y+A+ L++PK+R
Sbjct: 14  FAFTEKNLDWAKKLIDRYPAGRQASAVIPLLWRAQEQNEGWVSEPAIRYIAELLDMPKIR 73

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER- 163
           V EVATFYTMF  +P+G+       + H+  C TTPC LR S+ ++++ K +    +   
Sbjct: 74  VLEVATFYTMFQLQPVGK-------KAHIQVCGTTPCQLRGSEDLIKICKSRIAKHMHEI 126

Query: 164 ------------------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTS 193
                                         +DL P    Q+IDD+ AGK+  PGP     
Sbjct: 127 SEDGMFSWEEVECLGACVNAPMVQIFKDTYEDLTPDSFNQLIDDIAAGKEVTPGP----- 181

Query: 194 GIGSQSG-RFCQAREAYHDMTSLTGEPHG 221
               Q+G RF  A      +T L  +  G
Sbjct: 182 ----QNGRRFAMAEGGQTSLTELDDDTKG 206


>gi|393771615|ref|ZP_10360084.1| NADH dehydrogenase I subunit E [Novosphingobium sp. Rr 2-17]
 gi|392722867|gb|EIZ80263.1| NADH dehydrogenase I subunit E [Novosphingobium sp. Rr 2-17]
          Length = 222

 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/119 (46%), Positives = 74/119 (62%), Gaps = 15/119 (12%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADF 97
            F +T  N  +A+ I++ YP G +R+AV+PLLDLAQRQ        GWLPI  M Y+A +
Sbjct: 19  NFAWTEANAAKAQEIVARYPQGRQRSAVMPLLDLAQRQVGAELNTQGWLPIPVMEYIAAY 78

Query: 98  LNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           L++P +RV EVATFYTM+   PIG        ++H+  C TTPC LR SD +L   K +
Sbjct: 79  LDMPVIRVVEVATFYTMYNIAPIG--------RFHVQVCGTTPCMLRGSDDLLATCKSR 129


>gi|451940718|ref|YP_007461356.1| NADH dehydrogenase subunit E [Bartonella australis Aust/NH1]
 gi|451900105|gb|AGF74568.1| NADH dehydrogenase subunit E [Bartonella australis Aust/NH1]
          Length = 211

 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 114/229 (49%), Gaps = 52/229 (22%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R   +    +KF FT +N+  A+  I  YPVG E++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLADESYQPIKFSFTKENQVWAQNTIKKYPVGREQSAVIPLLMRAQEQEGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + +VA  L++  +RV EVATFYT F  KP+G+       + H+  C TTPC LR +  ++
Sbjct: 61  IEHVAQMLSMAYIRVLEVATFYTQFQLKPVGK-------KAHVQVCGTTPCMLRGAGELI 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
           +V +KK +                            +M+ +   +DL  + +E+IID  K
Sbjct: 114 KVCQKKIHHEPFVVNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFK 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPWDSKRD 228
            GK       G    +G Q+GR  ++ E    +TSL  E     D KR+
Sbjct: 174 EGK-------GSDIAVGPQNGR--KSSEPIGGLTSLIEE-----DKKRE 208


>gi|393718315|ref|ZP_10338242.1| NADH dehydrogenase I chain E [Sphingomonas echinoides ATCC 14820]
          Length = 222

 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 71/118 (60%), Gaps = 15/118 (12%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADFL 98
           F +T +N+K+A  I+  YP G E++A IP LDLAQRQ        GWLP+  + +VA  +
Sbjct: 20  FAWTEENQKKANEILGRYPKGREQSASIPFLDLAQRQVGAETQTQGWLPVPVIEFVARQI 79

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
            +P MRVYEVATFYTMF   P+G        +YH+  C TTPC L  SD +L   K K
Sbjct: 80  GVPYMRVYEVATFYTMFNMAPVG--------RYHVQVCGTTPCLLGGSDDVLSACKNK 129


>gi|66803074|ref|XP_635380.1| NADH dehydrogenase [Dictyostelium discoideum AX4]
 gi|74851521|sp|Q54F10.1|NDUV2_DICDI RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial; Flags: Precursor
 gi|60463688|gb|EAL61870.1| NADH dehydrogenase [Dictyostelium discoideum AX4]
          Length = 247

 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 85/146 (58%), Gaps = 11/146 (7%)

Query: 10  SNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHER 69
           SN   +N    ST  R   DAL  H +T+D+N    F+FT +N  + E I++ YP  + +
Sbjct: 18  SNGFNRNYFKQSTLTR--SDALSRHVETEDNNEHTPFDFTQENLVKVEKILAKYPKQYRQ 75

Query: 70  AAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSI 128
           +A+IPLLDLAQRQ+ GW+ + AM  VA    +  M  YEVA+FYTMF R  IGE  ++  
Sbjct: 76  SALIPLLDLAQRQNGGWISLRAMDKVAHICGIAPMTAYEVASFYTMFNRTKIGENFVQ-- 133

Query: 129 LQYHLNWCTTTPCWLRNSDAILEVIK 154
                  CTTTPC LR S  I++  K
Sbjct: 134 ------VCTTTPCMLRGSGEIIKTCK 153


>gi|397572837|gb|EJK48425.1| hypothetical protein THAOC_32775 [Thalassiosira oceanica]
          Length = 280

 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 85/151 (56%), Gaps = 16/151 (10%)

Query: 5   LAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYP 64
           L   A+    +  RS+ + Q         H +T D+ ++  F+FT +N K    I+S YP
Sbjct: 29  LPTAAAATAGRQTRSMGSAQSF-------HINTPDNTVETYFDFTEENYKLVNKILSKYP 81

Query: 65  VGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEE 123
             ++++ +IPLLDLAQRQH GWLP++AM  VA  +     RVYEVA+FYTMF R  +G  
Sbjct: 82  ANYKQSGIIPLLDLAQRQHGGWLPVAAMDKVASIVEAAPSRVYEVASFYTMFNRTKVG-- 139

Query: 124 RIKSILQYHLNWCTTTPCWLRNSDAILEVIK 154
                 +Y +  C TTPC +  S+ I + I+
Sbjct: 140 ------KYFIQLCGTTPCMICGSEDIKKTIE 164


>gi|15888603|ref|NP_354284.1| NADH ubiquinone oxidoreductase chain E [Agrobacterium fabrum str.
           C58]
 gi|15156323|gb|AAK87069.1| NADH ubiquinone oxidoreductase chain E [Agrobacterium fabrum str.
           C58]
          Length = 369

 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 94/183 (51%), Gaps = 38/183 (20%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D    V F F  DN   AE  I  YP G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDQFQPVAFAFNADNTAWAEKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  VAD L++  +RV EVATFYT F  KP+G        + H+  C TTPC LR S+A++
Sbjct: 61  IEKVADMLDMAYIRVLEVATFYTQFQLKPVG-------TRAHVQVCGTTPCMLRGSEALM 113

Query: 151 EVIKKKCN---------------------------MML----ERQDLEPKDMEQIIDDLK 179
           +V +KK +                           M++      +DL P+ +E+IID  +
Sbjct: 114 DVCRKKIHHDPLHTNDSGTLSWEEVECQGACVNAPMVIIFKDAYEDLTPERLEEIIDTFE 173

Query: 180 AGK 182
           AGK
Sbjct: 174 AGK 176


>gi|217979053|ref|YP_002363200.1| NADH-quinone oxidoreductase subunit E [Methylocella silvestris BL2]
 gi|217504429|gb|ACK51838.1| NADH-quinone oxidoreductase, E subunit [Methylocella silvestris
           BL2]
          Length = 264

 Score =  109 bits (273), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 111/229 (48%), Gaps = 61/229 (26%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F F+P+N+   +AII+ YP G + +AVI LL  AQ+Q+G WLP  A+  VA+ L +P +R
Sbjct: 14  FAFSPENEAWVDAIIAKYPQGRQASAVISLLWRAQKQNGYWLPRPAIEAVAEKLGMPYIR 73

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK-------- 156
           V E+ATFY+MF   P+GE        + +  C TTPC L  SD I  V+K +        
Sbjct: 74  VLEIATFYSMFNLSPVGE--------HFVQLCGTTPCLLAGSDGIKSVLKNRIGEPGVVT 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGK------------ 182
                           CN  + +      +DL P +  +++DDL AG+            
Sbjct: 126 ADGKFSWNEVECLGACCNAPMVQINDDYFEDLTPDNFAKLLDDLAAGRPVTAGSQTGRVS 185

Query: 183 -KPAPGPSGYTS--GIGSQSGRFCQAREA------YHDMTSLTGEPHGP 222
            +PA G +   S  G+  +SG +C A+EA            L G+P GP
Sbjct: 186 SEPAGGLTALVSFYGVNGRSGPYC-AKEAPSIGDPAAAQAELAGQPKGP 233


>gi|335035091|ref|ZP_08528434.1| NADH dehydrogenase subunit E [Agrobacterium sp. ATCC 31749]
 gi|333793522|gb|EGL64876.1| NADH dehydrogenase subunit E [Agrobacterium sp. ATCC 31749]
          Length = 369

 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 94/183 (51%), Gaps = 38/183 (20%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D    V F F  DN   AE  I  YP G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDQFQPVAFAFNADNTAWAEKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  VAD L++  +RV EVATFYT F  KP+G        + H+  C TTPC LR S+A++
Sbjct: 61  IEKVADMLDMAYIRVLEVATFYTQFQLKPVG-------TRAHVQVCGTTPCMLRGSEALM 113

Query: 151 EVIKKKCN---------------------------MML----ERQDLEPKDMEQIIDDLK 179
           +V +KK +                           M++      +DL P+ +E+IID  +
Sbjct: 114 DVCRKKIHHDPLHTNDSGTLSWEEVECQGACVNAPMVIIFKDAYEDLTPERLEEIIDTFE 173

Query: 180 AGK 182
           AGK
Sbjct: 174 AGK 176


>gi|115443358|ref|XP_001218486.1| hypothetical protein ATEG_09864 [Aspergillus terreus NIH2624]
 gi|114188355|gb|EAU30055.1| hypothetical protein ATEG_09864 [Aspergillus terreus NIH2624]
          Length = 312

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 101/201 (50%), Gaps = 40/201 (19%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQ--------RLNHDALFVHRDTKDDNLDVKFEFTPDN 52
           M S L  +A    RQ ++SL  TQ        +L  D+L VHR+  ++N  + F+F   N
Sbjct: 98  MASKLFPVAPRAGRQFLQSLPKTQCRPFSAGPQLYSDSLSVHRNKPNNNPSIPFKFNEQN 157

Query: 53  KKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFY 112
            K  + I+  YP  +++AAV+P+LDL QRQHG+  IS M+ VA  L +P MRVYEVATFY
Sbjct: 158 LKLIDEILKRYPPQYKKAAVMPILDLGQRQHGFTSISVMNEVARLLEMPPMRVYEVATFY 217

Query: 113 TMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLERQDLEPKDME 172
           TM+  + +G              C   P    N D                +DL P+ ++
Sbjct: 218 TMYNLECLG-------------ACVNAPMVQINDDYY--------------EDLTPESIK 250

Query: 173 QIIDDLK-----AGKKPAPGP 188
            ++  LK     + K PAPGP
Sbjct: 251 ALLTALKESSTGSAKVPAPGP 271


>gi|357133068|ref|XP_003568150.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Brachypodium distachyon]
          Length = 282

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/127 (41%), Positives = 85/127 (66%), Gaps = 9/127 (7%)

Query: 30  ALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPI 88
           AL  H D+ +++ D+ ++FT  N ++ + I+S YP  ++++ +IP+LDLAQ+QH GW+P+
Sbjct: 58  ALNYHIDSPENSPDMPWKFTEANMEKVKEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPV 117

Query: 89  SAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDA 148
           +AM+ +A+ + +  +RVYEVATFY+MF R  +G        +YHL  C TTPC +R S  
Sbjct: 118 AAMNAIAEIVEVAPIRVYEVATFYSMFNRTKVG--------KYHLLVCGTTPCMIRGSRD 169

Query: 149 ILEVIKK 155
           I E + K
Sbjct: 170 IEEALLK 176


>gi|319405694|emb|CBI79317.1| NADH dehydrogenase I, E subunit [Bartonella sp. AR 15-3]
          Length = 225

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 110/217 (50%), Gaps = 47/217 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R   D +  VKF FT +N+   +  I  YPVG E++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLADDIHQPVKFSFTKENQVWVQNTIKKYPVGREQSAVIPLLMRAQEQEGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + ++A+ L++  +RV EVATFYT F  KP+G        + H+  C TTPC LR S+ ++
Sbjct: 61  IEHIAEILSMAYIRVLEVATFYTQFQLKPVG-------TKAHIQVCGTTPCMLRGSEELI 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
           +V +KK +                            +M+ +   +DL  + +E+IID  +
Sbjct: 114 KVCQKKIHYKPFVTNQNGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFE 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLT 216
           AG+       G    +G Q+ R  ++ E    +TSL 
Sbjct: 174 AGR-------GSNIAVGPQNNR--KSSEPISGLTSLV 201


>gi|404253328|ref|ZP_10957296.1| NADH dehydrogenase I chain E [Sphingomonas sp. PAMC 26621]
          Length = 222

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/118 (45%), Positives = 71/118 (60%), Gaps = 15/118 (12%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADFL 98
           F +  +N+K+A  I+  YP G E++A IP LDLAQRQ        GWLP+  + +VA  +
Sbjct: 20  FAWNEENQKKANEILGRYPKGREQSASIPFLDLAQRQVGEETQTQGWLPVPVIEFVARAI 79

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           ++P MRVYEVATFYTMF   P+G        +YH+  C TTPC L  SD +L   K K
Sbjct: 80  SVPYMRVYEVATFYTMFNMAPVG--------RYHVQVCGTTPCLLGGSDDVLAACKNK 129


>gi|189183822|ref|YP_001937607.1| NADH dehydrogenase I chain E [Orientia tsutsugamushi str. Ikeda]
 gi|189180593|dbj|BAG40373.1| NADH dehydrogenase I chain E [Orientia tsutsugamushi str. Ikeda]
          Length = 184

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/112 (47%), Positives = 71/112 (63%), Gaps = 9/112 (8%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKM 103
           +F F+ D    A+ II+ YP G E +AV+ +LDLAQ Q+  WL  S + YVA  L +P +
Sbjct: 8   EFSFSSDTLVIAKKIINNYPAGKEASAVLAILDLAQNQNNNWLSNSCIEYVAKLLKMPYI 67

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
           +VYE+A+FYTMF  +PIG        +YH+  C TTPCWLR SD I+   KK
Sbjct: 68  KVYEIASFYTMFNLQPIG--------KYHIQICCTTPCWLRGSDDIMNFCKK 111


>gi|154253661|ref|YP_001414485.1| NADH-quinone oxidoreductase subunit E [Parvibaculum lavamentivorans
           DS-1]
 gi|154157611|gb|ABS64828.1| NADH-quinone oxidoreductase, E subunit [Parvibaculum
           lavamentivorans DS-1]
          Length = 208

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 91/181 (50%), Gaps = 39/181 (21%)

Query: 39  DDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADF 97
           D N    F FT +N + A+  I+ YP G + +A+IPLL  AQ QH GWLP  A+ +VAD 
Sbjct: 7   DPNQPASFAFTAENVEWAKQQIAKYPEGKQASAIIPLLWRAQEQHDGWLPEPAIRHVADM 66

Query: 98  LNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKC 157
           L +  +R  EVATFYTMF   P+GE        +++  C TTPCWLR +D + EV +K  
Sbjct: 67  LGMEYIRAIEVATFYTMFNLSPVGE--------HYVQLCGTTPCWLRGADELKEVCRKHI 118

Query: 158 N-----------MMLER-------------------QDLEPKDMEQIIDDLKAGKKPAPG 187
                         LE                    +DL+    E+++ DL++GK   PG
Sbjct: 119 GPEGTVSADGKFSWLEVECLGACVNAPMVQINADFFEDLDAASFERVLADLRSGKDVKPG 178

Query: 188 P 188
           P
Sbjct: 179 P 179


>gi|374331779|ref|YP_005081963.1| NADH:ubiquinone oxidoreductase, 24 kDa subunit [Pseudovibrio sp.
           FO-BEG1]
 gi|359344567|gb|AEV37941.1| NADH:ubiquinone oxidoreductase, 24 kDa subunit [Pseudovibrio sp.
           FO-BEG1]
          Length = 266

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 94/176 (53%), Gaps = 38/176 (21%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           FEF+P+N + A+ +I  YP G + +AV+P+L  AQ Q GW+   A+  +++ L++P++RV
Sbjct: 14  FEFSPENLEWAKKVIERYPEGRQASAVVPILWRAQEQVGWVTEPAIRVISEMLDMPRIRV 73

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKC-------- 157
            EVATFYTMF  +P+G+       + H+  C TTPC LR S+ +++V K K         
Sbjct: 74  LEVATFYTMFQLQPVGK-------KAHIQVCGTTPCQLRGSEELIKVCKSKISETPHTLS 126

Query: 158 ---NMMLER--------------------QDLEPKDMEQIIDDLKAGKKPAPGPSG 190
              N   E                     +DL+ +  E+++DD+  GK   PGP G
Sbjct: 127 EDGNFSWEEVECLGACVNAPMVQIFKDFYEDLDVEKFEKLLDDIAGGKPVLPGPQG 182


>gi|254469750|ref|ZP_05083155.1| NADH dehydrogenase i chain e protein [Pseudovibrio sp. JE062]
 gi|211961585|gb|EEA96780.1| NADH dehydrogenase i chain e protein [Pseudovibrio sp. JE062]
          Length = 266

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 94/176 (53%), Gaps = 38/176 (21%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           FEF+P+N + A+ +I  YP G + +AV+P+L  AQ Q GW+   A+  +++ L++P++RV
Sbjct: 14  FEFSPENLEWAKKVIERYPEGRQASAVVPILWRAQEQVGWVTEPAIRVISEMLDMPRIRV 73

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKC-------- 157
            EVATFYTMF  +P+G+       + H+  C TTPC LR S+ +++V K K         
Sbjct: 74  LEVATFYTMFQLQPVGK-------KAHIQVCGTTPCQLRGSEELIKVCKSKISETPHTLS 126

Query: 158 ---NMMLER--------------------QDLEPKDMEQIIDDLKAGKKPAPGPSG 190
              N   E                     +DL+ +  E+++DD+  GK   PGP G
Sbjct: 127 EDGNFSWEEVECLGACVNAPMVQIFKDFYEDLDVEKFEKLLDDIAGGKPVLPGPQG 182


>gi|325292638|ref|YP_004278502.1| NADH dehydrogenase I subunit E [Agrobacterium sp. H13-3]
 gi|325060491|gb|ADY64182.1| NADH dehydrogenase I, E subunit [Agrobacterium sp. H13-3]
          Length = 369

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 94/183 (51%), Gaps = 38/183 (20%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D    V F F  DN   AE  I  YP G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDQFQPVAFAFNADNTAWAEKTIQKYPEGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  +AD L++  +RV EVATFYT F  KP+G        + H+  C TTPC LR S+A++
Sbjct: 61  IEKIADMLDMAYIRVMEVATFYTQFQLKPVG-------TRAHVQVCGTTPCMLRGSEALM 113

Query: 151 EVIKKKCN---------------------------MML----ERQDLEPKDMEQIIDDLK 179
           +V +KK +                           M++      +DL P+ +E+IID  +
Sbjct: 114 DVCRKKIHHDPLHTNESGTLSWEEVECQGACVNAPMVIIFKDAYEDLTPERLEEIIDTFE 173

Query: 180 AGK 182
           AGK
Sbjct: 174 AGK 176


>gi|15965022|ref|NP_385375.1| NADH dehydrogenase subunit E [Sinorhizobium meliloti 1021]
 gi|384528981|ref|YP_005713069.1| NADH-quinone oxidoreductase subunit E [Sinorhizobium meliloti
           BL225C]
 gi|384536739|ref|YP_005720824.1| nadh dehydrogenase i chain e protein [Sinorhizobium meliloti SM11]
 gi|433613043|ref|YP_007189841.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti GR4]
 gi|8473988|sp|P56909.1|NUOE1_RHIME RecName: Full=NADH-quinone oxidoreductase subunit E 1; AltName:
           Full=NADH dehydrogenase I subunit E 1; AltName:
           Full=NDH-1 subunit E 1
 gi|15074201|emb|CAC45848.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti 1021]
 gi|333811157|gb|AEG03826.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
           BL225C]
 gi|336033631|gb|AEH79563.1| nadh dehydrogenase i chain e protein [Sinorhizobium meliloti SM11]
 gi|429551233|gb|AGA06242.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti GR4]
          Length = 275

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 103/203 (50%), Gaps = 43/203 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D      F F+ +N   AEA I  YP G E++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDTVQPAAFAFSKENAAWAEATIKKYPEGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  VAD L +  +RV EVATFYT F  +P+G        + H+  C TTPC LR ++ ++
Sbjct: 61  IESVADMLGMAYIRVLEVATFYTQFQLQPVG-------TRAHVQVCGTTPCMLRGAEDLI 113

Query: 151 EVIKKK--------------------CN--------MMLER---QDLEPKDMEQIIDDLK 179
           ++ KKK                    C         +M+ +   +DL P+ +E+IID  +
Sbjct: 114 KICKKKIASEPFTLNEGGTLSWEEVECQGACVNAPMVMIFKDTFEDLTPERLEEIIDRFE 173

Query: 180 AGK--KPAPGPS---GYTSGIGS 197
           AGK  +  PGP     Y++ IG 
Sbjct: 174 AGKGSEVVPGPQIDRVYSAPIGG 196


>gi|418406791|ref|ZP_12980110.1| NADH dehydrogenase subunit E [Agrobacterium tumefaciens 5A]
 gi|358007284|gb|EHJ99607.1| NADH dehydrogenase subunit E [Agrobacterium tumefaciens 5A]
          Length = 369

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 94/183 (51%), Gaps = 38/183 (20%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D    V F F  DN   AE  I  YP G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDQFQPVAFAFNADNTAWAEKTIQKYPEGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  +AD L++  +RV EVATFYT F  KP+G        + H+  C TTPC LR S+A++
Sbjct: 61  IEKIADMLDMAYIRVMEVATFYTQFQLKPVG-------TRAHVQVCGTTPCMLRGSEALM 113

Query: 151 EVIKKKCN---------------------------MML----ERQDLEPKDMEQIIDDLK 179
           +V +KK +                           M++      +DL P+ +E+IID  +
Sbjct: 114 DVCRKKIHHDPLHTNESGTLSWEEVECQGACVNAPMVIIFKDAYEDLTPERLEEIIDTFE 173

Query: 180 AGK 182
           AGK
Sbjct: 174 AGK 176


>gi|304319953|ref|YP_003853596.1| NADH dehydrogenase I subunit E [Parvularcula bermudensis HTCC2503]
 gi|303298856|gb|ADM08455.1| NADH dehydrogenase I, E subunit [Parvularcula bermudensis HTCC2503]
          Length = 221

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 41/181 (22%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F++T DNK   E  I+ +P G + +AVIP L  AQ+Q GW+ I AM  +A  L +P +RV
Sbjct: 14  FQWTEDNKAWCEKEITKFPEGRQASAVIPFLWRAQKQEGWVSIPAMEAIATQLGMPYIRV 73

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
           YEVATFYTMF  KP+G         Y +  C TTPC LR S++++EV ++          
Sbjct: 74  YEVATFYTMFNLKPVG--------TYFVQVCGTTPCMLRGSESLIEVCERVIGPQGAITE 125

Query: 157 ---------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPG---PSGYT 192
                          CN  + +      QDL P+  E+I+  L  G+  APG   P+ +T
Sbjct: 126 SGHLSWLEVECLGACCNAPMAQINDYYYQDLTPEKFEEILLTLDKGEAVAPGVFNPARHT 185

Query: 193 S 193
           S
Sbjct: 186 S 186


>gi|290984759|ref|XP_002675094.1| predicted protein [Naegleria gruberi]
 gi|284088688|gb|EFC42350.1| predicted protein [Naegleria gruberi]
          Length = 260

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 94/162 (58%), Gaps = 11/162 (6%)

Query: 1   MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
           ML N   L   VV  N R  STT+  +    + H DT+ +N++  F+F+P++    + I+
Sbjct: 1   MLRNTNNLLRRVVLNNKRCFSTTR--SSFLQYKHVDTEYNNVNTPFDFSPESYAEIKKIL 58

Query: 61  SIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           + YP  H+++ ++PLL LAQRQ+ GW+P++A++ +A+   +    V+E  +FYTMF  +P
Sbjct: 59  AKYPSKHKQSGILPLLHLAQRQNGGWIPLAAINKIAEICEVNPRNVFECVSFYTMFNTQP 118

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMML 161
           +G        +YH+  C TTPC +   D IL  +++   + L
Sbjct: 119 VG--------KYHIQVCITTPCMITGCDNILATLEQHLGIKL 152


>gi|265994747|ref|ZP_06107304.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 3 str. Ether]
 gi|262765860|gb|EEZ11649.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 3 str. Ether]
          Length = 237

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 105/217 (48%), Gaps = 47/217 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R   D      F F  +N+  A   I+ YP G +++AVIPLL  AQ Q GW+  ++
Sbjct: 1   MSVRRLADDAVQPATFAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEGWVTKAS 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + YVA  LN+P +RV EVATFYT F  KP+G        + H+  C TTPC LR S+A++
Sbjct: 61  IEYVAAMLNMPLIRVLEVATFYTQFQLKPVGS-------RAHIQVCGTTPCMLRGSEALM 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
           +V + K +                            +M+ +   +DL P+ + +IID  +
Sbjct: 114 DVCRHKIHHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFE 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLT 216
           AGK       G T   G Q GR     E    +T+LT
Sbjct: 174 AGK-------GDTIKSGPQDGRVTS--EPASGLTALT 201


>gi|334315812|ref|YP_004548431.1| NADH-quinone oxidoreductase subunit E [Sinorhizobium meliloti AK83]
 gi|407720213|ref|YP_006839875.1| NADH-quinone oxidoreductase subunit E 1 [Sinorhizobium meliloti
           Rm41]
 gi|418402649|ref|ZP_12976157.1| NADH dehydrogenase subunit E [Sinorhizobium meliloti CCNWSX0020]
 gi|5650739|emb|CAB51625.1| nuoE1 [Sinorhizobium meliloti]
 gi|334094806|gb|AEG52817.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
           AK83]
 gi|359503390|gb|EHK75944.1| NADH dehydrogenase subunit E [Sinorhizobium meliloti CCNWSX0020]
 gi|407318445|emb|CCM67049.1| NADH-quinone oxidoreductase subunit E 1 [Sinorhizobium meliloti
           Rm41]
          Length = 276

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 103/203 (50%), Gaps = 43/203 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D      F F+ +N   AEA I  YP G E++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDTVQPAAFAFSKENAAWAEATIKKYPEGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  VAD L +  +RV EVATFYT F  +P+G        + H+  C TTPC LR ++ ++
Sbjct: 61  IESVADMLGMAYIRVLEVATFYTQFQLQPVG-------TRAHVQVCGTTPCMLRGAEDLI 113

Query: 151 EVIKKK--------------------CN--------MMLER---QDLEPKDMEQIIDDLK 179
           ++ KKK                    C         +M+ +   +DL P+ +E+IID  +
Sbjct: 114 KICKKKIASEPFTLNEGGTLSWEEVECQGACVNAPMVMIFKDTFEDLTPERLEEIIDRFE 173

Query: 180 AGK--KPAPGPS---GYTSGIGS 197
           AGK  +  PGP     Y++ IG 
Sbjct: 174 AGKGSEVVPGPQIDRVYSAPIGG 196


>gi|328543690|ref|YP_004303799.1| NADH-quinone oxidoreductase subunit E family protein [Polymorphum
           gilvum SL003B-26A1]
 gi|326413434|gb|ADZ70497.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
           [Polymorphum gilvum SL003B-26A1]
          Length = 378

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 93/175 (53%), Gaps = 39/175 (22%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMR 104
           F FT DN   A+ +I  YP G + +AVIPLL  AQ Q+ GW+   A+ Y+AD L +P +R
Sbjct: 14  FAFTADNLAWAKKVIDRYPAGRQASAVIPLLWRAQEQNDGWVCEPAIRYIADMLGMPHIR 73

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM----- 159
           V EVATFYTMF  +P+G+       + H+  C TTPC LR ++ ++ V K K        
Sbjct: 74  VLEVATFYTMFQLQPVGK-------KAHIQVCGTTPCQLRGAEDLIRVCKSKIAAHAHDL 126

Query: 160 ---------------------MLE-----RQDLEPKDMEQIIDDLKAGKKPAPGP 188
                                M++      +DL P+ +E++I+D+ AG++  PGP
Sbjct: 127 SADGDFSWEEVECLGACVNAPMVQIFKDTYEDLTPESLEKLIEDIAAGREVTPGP 181


>gi|62289755|ref|YP_221548.1| NADH dehydrogenase subunit E [Brucella abortus bv. 1 str. 9-941]
 gi|62195887|gb|AAX74187.1| NuoE, NADH dehydrogenase I, E subunit [Brucella abortus bv. 1 str.
           9-941]
          Length = 237

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 105/217 (48%), Gaps = 47/217 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R   D      F F  +N+  A   I+ YP G +++AVIPLL  AQ Q GW+  ++
Sbjct: 1   MSVRRLADDAVQPATFAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEGWVTKAS 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + YVA  LN+P +RV EVATFYT F  KP+G        + H+  C TTPC LR S+A++
Sbjct: 61  IEYVAAMLNMPLIRVLEVATFYTQFQLKPVGS-------RAHIQVCGTTPCMLRGSEALM 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
           +V + K +                            +M+ +   +DL P+ + +IID  +
Sbjct: 114 DVCRHKIHHNPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFE 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLT 216
           AGK       G T   G Q GR     E    +T+LT
Sbjct: 174 AGK-------GDTIKPGPQDGRVTS--EPASGLTALT 201


>gi|145507360|ref|XP_001439635.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406830|emb|CAK72238.1| unnamed protein product [Paramecium tetraurelia]
          Length = 263

 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 109/207 (52%), Gaps = 51/207 (24%)

Query: 30  ALFVHRDTKDDNLD-VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-HGWLP 87
           ++FV    +DDN D V F+FT +N K+ E I+S +P   +++  IPLL LAQ+Q + +L 
Sbjct: 19  SVFVAHRNRDDNSDSVPFDFTDENYKKIEGILSKFPSNEKKSGTIPLLMLAQKQNNNFLS 78

Query: 88  ISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSD 147
           +SAM  +A  L +P+M V+E A+FY+MF R+ +G        ++HL  C TTPC L  S 
Sbjct: 79  LSAMKKIAKILEIPEMDVFETASFYSMFNRERVG--------KFHLQVCGTTPCQLCGSK 130

Query: 148 AILEVIKKKCNM--------------------------MLE------RQDLEPKDMEQII 175
            I++ I+++ N+                          M++       +DL P++  +++
Sbjct: 131 DIIKAIEQQLNIKNGETSADGLFTLQEVECLGACANAPMMQVNNEWVYEDLTPENTLKLL 190

Query: 176 DDLK---------AGKKPAPGPSGYTS 193
           +DLK          G+K A GP G T+
Sbjct: 191 EDLKNGTDKKGPQNGRKNAEGPQGRTT 217


>gi|17987437|ref|NP_540071.1| NADH dehydrogenase subunit E [Brucella melitensis bv. 1 str. 16M]
 gi|23501693|ref|NP_697820.1| NADH dehydrogenase subunit E [Brucella suis 1330]
 gi|82699683|ref|YP_414257.1| NADH dehydrogenase subunit E [Brucella melitensis biovar Abortus
           2308]
 gi|148560694|ref|YP_001258784.1| NADH dehydrogenase subunit E [Brucella ovis ATCC 25840]
 gi|161618770|ref|YP_001592657.1| NADH dehydrogenase subunit E [Brucella canis ATCC 23365]
 gi|163843079|ref|YP_001627483.1| NADH dehydrogenase subunit E [Brucella suis ATCC 23445]
 gi|189024000|ref|YP_001934768.1| NADH dehydrogenase subunit E [Brucella abortus S19]
 gi|225627303|ref|ZP_03785340.1| NADH-quinone oxidoreductase, E subunit [Brucella ceti str. Cudo]
 gi|237815242|ref|ZP_04594240.1| NADH-quinone oxidoreductase, E subunit [Brucella abortus str. 2308
           A]
 gi|256369238|ref|YP_003106746.1| NADH dehydrogenase subunit E [Brucella microti CCM 4915]
 gi|260545495|ref|ZP_05821236.1| NADH dehydrogenase [Brucella abortus NCTC 8038]
 gi|260563839|ref|ZP_05834325.1| NADH dehydrogenase [Brucella melitensis bv. 1 str. 16M]
 gi|260566630|ref|ZP_05837100.1| NADH dehydrogenase [Brucella suis bv. 4 str. 40]
 gi|260754560|ref|ZP_05866908.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870]
 gi|260757781|ref|ZP_05870129.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292]
 gi|260761606|ref|ZP_05873949.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883587|ref|ZP_05895201.1| NADH-quinone oxidoreductase [Brucella abortus bv. 9 str. C68]
 gi|261213809|ref|ZP_05928090.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya]
 gi|261218834|ref|ZP_05933115.1| NADH-quinone oxidoreductase [Brucella ceti M13/05/1]
 gi|261221996|ref|ZP_05936277.1| NADH-quinone oxidoreductase [Brucella ceti B1/94]
 gi|261314442|ref|ZP_05953639.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M163/99/10]
 gi|261317460|ref|ZP_05956657.1| NADH-quinone oxidoreductase [Brucella pinnipedialis B2/94]
 gi|261321667|ref|ZP_05960864.1| NADH-quinone oxidoreductase [Brucella ceti M644/93/1]
 gi|261324918|ref|ZP_05964115.1| NADH-quinone oxidoreductase [Brucella neotomae 5K33]
 gi|261752127|ref|ZP_05995836.1| NADH-quinone oxidoreductase [Brucella suis bv. 5 str. 513]
 gi|261754787|ref|ZP_05998496.1| NADH-quinone oxidoreductase [Brucella suis bv. 3 str. 686]
 gi|261758014|ref|ZP_06001723.1| NADH dehydrogenase subunit E [Brucella sp. F5/99]
 gi|265983902|ref|ZP_06096637.1| NADH-quinone oxidoreductase [Brucella sp. 83/13]
 gi|265988496|ref|ZP_06101053.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M292/94/1]
 gi|265990909|ref|ZP_06103466.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265997960|ref|ZP_06110517.1| NADH-quinone oxidoreductase [Brucella ceti M490/95/1]
 gi|294852163|ref|ZP_06792836.1| NADH dehydrogenase I subunit E [Brucella sp. NVSL 07-0026]
 gi|297248160|ref|ZP_06931878.1| NADH dehydrogenase I subunit E [Brucella abortus bv. 5 str. B3196]
 gi|306838237|ref|ZP_07471089.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. NF 2653]
 gi|306841956|ref|ZP_07474633.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. BO2]
 gi|306843743|ref|ZP_07476342.1| NADH-quinone oxidoreductase, E subunit [Brucella inopinata BO1]
 gi|340790437|ref|YP_004755902.1| NADH dehydrogenase subunit E [Brucella pinnipedialis B2/94]
 gi|376273466|ref|YP_005152044.1| NADH-quinone oxidoreductase subunit E [Brucella abortus A13334]
 gi|376274449|ref|YP_005114888.1| NADH-quinone oxidoreductase subunit E [Brucella canis HSK A52141]
 gi|376280486|ref|YP_005154492.1| NADH dehydrogenase subunit E [Brucella suis VBI22]
 gi|384224480|ref|YP_005615644.1| NADH dehydrogenase subunit E [Brucella suis 1330]
 gi|423167069|ref|ZP_17153772.1| NADH-quinone oxidoreductase subunit E 1 [Brucella abortus bv. 1
           str. NI435a]
 gi|423170555|ref|ZP_17157230.1| NADH-quinone oxidoreductase subunit E 1 [Brucella abortus bv. 1
           str. NI474]
 gi|423173364|ref|ZP_17160035.1| NADH-quinone oxidoreductase subunit E 1 [Brucella abortus bv. 1
           str. NI486]
 gi|423177350|ref|ZP_17163996.1| NADH-quinone oxidoreductase subunit E 1 [Brucella abortus bv. 1
           str. NI488]
 gi|423179986|ref|ZP_17166627.1| NADH-quinone oxidoreductase subunit E 1 [Brucella abortus bv. 1
           str. NI010]
 gi|423183118|ref|ZP_17169755.1| NADH-quinone oxidoreductase subunit E 1 [Brucella abortus bv. 1
           str. NI016]
 gi|423185940|ref|ZP_17172554.1| NADH-quinone oxidoreductase subunit E 1 [Brucella abortus bv. 1
           str. NI021]
 gi|423189080|ref|ZP_17175690.1| NADH-quinone oxidoreductase subunit E 1 [Brucella abortus bv. 1
           str. NI259]
 gi|17983130|gb|AAL52335.1| NADH-quinone oxidoreductase chain e [Brucella melitensis bv. 1 str.
           16M]
 gi|23347615|gb|AAN29735.1| NADH dehydrogenase I, E subunit [Brucella suis 1330]
 gi|82615784|emb|CAJ10782.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Brucella
           melitensis biovar Abortus 2308]
 gi|148371951|gb|ABQ61930.1| NADH dehydrogenase I, E subunit [Brucella ovis ATCC 25840]
 gi|161335581|gb|ABX61886.1| NADH-quinone oxidoreductase, E subunit [Brucella canis ATCC 23365]
 gi|163673802|gb|ABY37913.1| NADH-quinone oxidoreductase, E subunit [Brucella suis ATCC 23445]
 gi|189019572|gb|ACD72294.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Brucella abortus
           S19]
 gi|225617308|gb|EEH14353.1| NADH-quinone oxidoreductase, E subunit [Brucella ceti str. Cudo]
 gi|237790079|gb|EEP64289.1| NADH-quinone oxidoreductase, E subunit [Brucella abortus str. 2308
           A]
 gi|255999398|gb|ACU47797.1| ATP synthase subunit E [Brucella microti CCM 4915]
 gi|260096902|gb|EEW80777.1| NADH dehydrogenase [Brucella abortus NCTC 8038]
 gi|260153855|gb|EEW88947.1| NADH dehydrogenase [Brucella melitensis bv. 1 str. 16M]
 gi|260156148|gb|EEW91228.1| NADH dehydrogenase [Brucella suis bv. 4 str. 40]
 gi|260668099|gb|EEX55039.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292]
 gi|260672038|gb|EEX58859.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674668|gb|EEX61489.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870]
 gi|260873115|gb|EEX80184.1| NADH-quinone oxidoreductase [Brucella abortus bv. 9 str. C68]
 gi|260915416|gb|EEX82277.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya]
 gi|260920580|gb|EEX87233.1| NADH-quinone oxidoreductase [Brucella ceti B1/94]
 gi|260923923|gb|EEX90491.1| NADH-quinone oxidoreductase [Brucella ceti M13/05/1]
 gi|261294357|gb|EEX97853.1| NADH-quinone oxidoreductase [Brucella ceti M644/93/1]
 gi|261296683|gb|EEY00180.1| NADH-quinone oxidoreductase [Brucella pinnipedialis B2/94]
 gi|261300898|gb|EEY04395.1| NADH-quinone oxidoreductase [Brucella neotomae 5K33]
 gi|261303468|gb|EEY06965.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M163/99/10]
 gi|261737998|gb|EEY25994.1| NADH dehydrogenase subunit E [Brucella sp. F5/99]
 gi|261741880|gb|EEY29806.1| NADH-quinone oxidoreductase [Brucella suis bv. 5 str. 513]
 gi|261744540|gb|EEY32466.1| NADH-quinone oxidoreductase [Brucella suis bv. 3 str. 686]
 gi|262552428|gb|EEZ08418.1| NADH-quinone oxidoreductase [Brucella ceti M490/95/1]
 gi|263001693|gb|EEZ14268.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 1 str. Rev.1]
 gi|264660693|gb|EEZ30954.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M292/94/1]
 gi|264662494|gb|EEZ32755.1| NADH-quinone oxidoreductase [Brucella sp. 83/13]
 gi|294820752|gb|EFG37751.1| NADH dehydrogenase I subunit E [Brucella sp. NVSL 07-0026]
 gi|297175329|gb|EFH34676.1| NADH dehydrogenase I subunit E [Brucella abortus bv. 5 str. B3196]
 gi|306275934|gb|EFM57647.1| NADH-quinone oxidoreductase, E subunit [Brucella inopinata BO1]
 gi|306287947|gb|EFM59358.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. BO2]
 gi|306406681|gb|EFM62908.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. NF 2653]
 gi|340558896|gb|AEK54134.1| NADH dehydrogenase, subunit E [Brucella pinnipedialis B2/94]
 gi|343382660|gb|AEM18152.1| NADH dehydrogenase subunit E [Brucella suis 1330]
 gi|358258085|gb|AEU05820.1| NADH dehydrogenase subunit E [Brucella suis VBI22]
 gi|363401072|gb|AEW18042.1| NADH-quinone oxidoreductase, E subunit [Brucella abortus A13334]
 gi|363403016|gb|AEW13311.1| NADH-quinone oxidoreductase, E subunit [Brucella canis HSK A52141]
 gi|374540603|gb|EHR12103.1| NADH-quinone oxidoreductase subunit E 1 [Brucella abortus bv. 1
           str. NI474]
 gi|374541957|gb|EHR13447.1| NADH-quinone oxidoreductase subunit E 1 [Brucella abortus bv. 1
           str. NI435a]
 gi|374542693|gb|EHR14180.1| NADH-quinone oxidoreductase subunit E 1 [Brucella abortus bv. 1
           str. NI486]
 gi|374549831|gb|EHR21273.1| NADH-quinone oxidoreductase subunit E 1 [Brucella abortus bv. 1
           str. NI010]
 gi|374550350|gb|EHR21789.1| NADH-quinone oxidoreductase subunit E 1 [Brucella abortus bv. 1
           str. NI016]
 gi|374550634|gb|EHR22070.1| NADH-quinone oxidoreductase subunit E 1 [Brucella abortus bv. 1
           str. NI488]
 gi|374558738|gb|EHR30131.1| NADH-quinone oxidoreductase subunit E 1 [Brucella abortus bv. 1
           str. NI259]
 gi|374559328|gb|EHR30716.1| NADH-quinone oxidoreductase subunit E 1 [Brucella abortus bv. 1
           str. NI021]
          Length = 237

 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 105/217 (48%), Gaps = 47/217 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R   D      F F  +N+  A   I+ YP G +++AVIPLL  AQ Q GW+  ++
Sbjct: 1   MSVRRLADDAVQPATFAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEGWVTKAS 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + YVA  LN+P +RV EVATFYT F  KP+G        + H+  C TTPC LR S+A++
Sbjct: 61  IEYVAAMLNMPLIRVLEVATFYTQFQLKPVGS-------RAHIQVCGTTPCMLRGSEALM 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
           +V + K +                            +M+ +   +DL P+ + +IID  +
Sbjct: 114 DVCRHKIHHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFE 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLT 216
           AGK       G T   G Q GR     E    +T+LT
Sbjct: 174 AGK-------GDTIKPGPQDGRVTS--EPASGLTALT 201


>gi|225852322|ref|YP_002732555.1| NADH dehydrogenase subunit E [Brucella melitensis ATCC 23457]
 gi|256264179|ref|ZP_05466711.1| NADH dehydrogenase [Brucella melitensis bv. 2 str. 63/9]
 gi|384211182|ref|YP_005600264.1| NADH-quinone oxidoreductase subunit E [Brucella melitensis M5-90]
 gi|384408282|ref|YP_005596903.1| NADH dehydrogenase subunit E [Brucella melitensis M28]
 gi|384444887|ref|YP_005603606.1| NADH-quinone oxidoreductase subunit E [Brucella melitensis NI]
 gi|225640687|gb|ACO00601.1| NADH-quinone oxidoreductase, E subunit [Brucella melitensis ATCC
           23457]
 gi|263094397|gb|EEZ18242.1| NADH dehydrogenase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408829|gb|ADZ65894.1| NADH dehydrogenase subunit E [Brucella melitensis M28]
 gi|326538545|gb|ADZ86760.1| NADH-quinone oxidoreductase, E subunit [Brucella melitensis M5-90]
 gi|349742881|gb|AEQ08424.1| NADH-quinone oxidoreductase, E subunit [Brucella melitensis NI]
          Length = 237

 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 105/217 (48%), Gaps = 47/217 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R   D      F F  +N+  A   I+ YP G +++AVIPLL  AQ Q GW+  ++
Sbjct: 1   MSVRRLADDAVQPATFAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEGWVTKAS 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + YVA  LN+P +RV EVATFYT F  KP+G        + H+  C TTPC LR S+A++
Sbjct: 61  IEYVAAMLNMPLIRVLEVATFYTQFQLKPVGS-------RAHIQVCGTTPCMLRGSEALM 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
           +V + K +                            +M+ +   +DL P+ + +IID  +
Sbjct: 114 DVCRHKIHHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFE 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLT 216
           AGK       G T   G Q GR     E    +T+LT
Sbjct: 174 AGK-------GDTIKPGPQDGRVTS--EPASGLTALT 201


>gi|262277297|ref|ZP_06055090.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, precursor
           (nadh-ubiquinone oxidoreductase24 kda subunit) [alpha
           proteobacterium HIMB114]
 gi|262224400|gb|EEY74859.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, precursor
           (nadh-ubiquinone oxidoreductase24 kda subunit) [alpha
           proteobacterium HIMB114]
          Length = 201

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/202 (34%), Positives = 100/202 (49%), Gaps = 51/202 (25%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F FT +NKK+ E ++  YP    ++AV+PLL +AQRQ+  W+P++A+  ++D L +  ++
Sbjct: 14  FAFTDENKKKIEEVLKKYPENKRKSAVMPLLYIAQRQNNNWIPLAAIQLISDMLGVTYIK 73

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKC------- 157
           VYEVATFYTM+   P+G        +Y +  CTTTPC +R S  ++EV KK         
Sbjct: 74  VYEVATFYTMYNLAPVG--------KYFVQVCTTTPCMIRGSGKVVEVCKKHISEKQGHL 125

Query: 158 NMMLER------------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTS 193
           N  L+                         +DL  +  E II   K GK P         
Sbjct: 126 NKELDSSWIEVECLGACVNAPMVQINDDYFEDLNAEKAEAIIKGFKEGKLP--------- 176

Query: 194 GIGSQSGRFCQAREAYHDMTSL 215
            IGSQSGR  +  E   + T+L
Sbjct: 177 NIGSQSGR--KGSEPIQNRTTL 196


>gi|315499793|ref|YP_004088596.1| NADH-quinone oxidoreductase, e subunit [Asticcacaulis excentricus
           CB 48]
 gi|315417805|gb|ADU14445.1| NADH-quinone oxidoreductase, E subunit [Asticcacaulis excentricus
           CB 48]
          Length = 221

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 90/173 (52%), Gaps = 37/173 (21%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F F P+  ++A   I+ YP    ++AVIP+L L Q+Q GW+   A+  VA+ L + ++RV
Sbjct: 14  FAFKPETLEKANWWIAKYPENRRQSAVIPILWLIQKQEGWVSEPAIAVVAEMLGMARIRV 73

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
           YEVATFYTMF+ +P+G   +  +       C TTPC LR S+A+++V K K         
Sbjct: 74  YEVATFYTMFMLEPVGSAALIQV-------CGTTPCQLRGSEALMKVCKDKIGPKDKLSA 126

Query: 157 ---------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGP 188
                           N  + +      +DL P ++ QIIDD  AGK P  GP
Sbjct: 127 DGKFYWQEVECLGACTNAPMAQINDYFYEDLTPDNLAQIIDDFSAGKTPKTGP 179


>gi|403369730|gb|EJY84714.1| Hydrogenosomal NADH dehydrogenase 24 kDa subunit [Oxytricha
           trifallax]
          Length = 282

 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 127/254 (50%), Gaps = 53/254 (20%)

Query: 3   SNLAKLASNVVRQ------NVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKK 54
           SNL +  S+  +Q      N + +  T  LN    A   HR+T+D+  +  FEFT +N +
Sbjct: 11  SNLLRANSSKTQQLFSLLANQQPVPVTYNLNRQFSAFVNHRNTEDNLEESPFEFTKENYE 70

Query: 55  RAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYT 113
               II+ YP  ++ +AVIPLL +AQ+Q+  +L +SAM+ VA  L++  M+VYEVA+FYT
Sbjct: 71  TINQIIAKYPSNYKHSAVIPLLFVAQKQNENFLTLSAMNKVAKILDMAPMQVYEVASFYT 130

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM-------------- 159
           MF R  +G        +YHL  C TTPC LR +  +++ I++  ++              
Sbjct: 131 MFNRTKVG--------KYHLQVCGTTPCMLRGAREVMKAIREYAHIENDEISADGLFTIS 182

Query: 160 ------------MLE------RQDLEPKDMEQIIDDLKAGKKPAPGPS---GYTSGIGSQ 198
                       M++       +DL P++   +++  K G+ P  GP     ++ G  S+
Sbjct: 183 EVECLGACVNAPMMQVNNEWFYEDLTPENTIALLEKWKKGETPQVGPQINRQFSLGPLSR 242

Query: 199 SGRFCQAR-EAYHD 211
           +  + Q   E  HD
Sbjct: 243 TSLYKQEEIEVSHD 256


>gi|296283835|ref|ZP_06861833.1| NADH-quinone oxidoreductase, E subunit [Citromicrobium
           bathyomarinum JL354]
          Length = 222

 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 74/118 (62%), Gaps = 15/118 (12%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADFL 98
           F F  D + +A+  ++ YP G +++AV+PLLDLAQRQ        GWLP+  + YVA++L
Sbjct: 20  FAFNADYEAKAQKALARYPEGRKKSAVMPLLDLAQRQVGEETDTQGWLPLPVIEYVANYL 79

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           ++P +RV EVATFY M+   P+G        +YH+  C TTPC LR SD I+   KK+
Sbjct: 80  DMPVIRVLEVATFYFMYNMTPVG--------KYHVQVCGTTPCMLRGSDDIIAACKKR 129


>gi|163868369|ref|YP_001609578.1| NADH dehydrogenase subunit E [Bartonella tribocorum CIP 105476]
 gi|161018025|emb|CAK01583.1| NADH dehydrogenase I, E subunit [Bartonella tribocorum CIP 105476]
          Length = 223

 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 107/216 (49%), Gaps = 47/216 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R   D     +F FT +N+   ++ I  YPVG E++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLADDVYQPTEFSFTKENQIWVKSTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + ++A  L++  +RV EVATFYT F  KP+G        + H+  C TTPC LR SD ++
Sbjct: 61  IEHIAQILSMAYIRVLEVATFYTQFQLKPVG-------TKAHIQVCGTTPCMLRGSDELI 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
           +V +KK +                            +M+ +   +DL  + +E+IID   
Sbjct: 114 KVCQKKIHHEPFTTNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFG 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSL 215
           AGK       G    +G Q+ R  Q+ E    +TSL
Sbjct: 174 AGK-------GSEIAVGPQNSR--QSSEPISGLTSL 200


>gi|403339182|gb|EJY68843.1| Hydrogenosomal NADH dehydrogenase 24 kDa subunit [Oxytricha
           trifallax]
 gi|403355699|gb|EJY77435.1| Hydrogenosomal NADH dehydrogenase 24 kDa subunit [Oxytricha
           trifallax]
          Length = 282

 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 96/162 (59%), Gaps = 17/162 (10%)

Query: 3   SNLAKLASNVVRQ------NVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKK 54
           SNL +  S+  +Q      N + +  T  LN    A   HR+T+D+  +  FEFT +N +
Sbjct: 11  SNLLRANSSKTQQLFSLLANQQPVPVTYNLNRQFSAFVNHRNTEDNLEESPFEFTKENYE 70

Query: 55  RAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYT 113
               II+ YP  ++ +AVIPLL +AQ+Q+  +L +SAM+ VA  L++  M+VYEVA+FYT
Sbjct: 71  TINQIIAKYPSNYKHSAVIPLLFVAQKQNENFLTLSAMNKVAKILDMAPMQVYEVASFYT 130

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
           MF R  +G        +YHL  C TTPC LR +  +++ I++
Sbjct: 131 MFNRTKVG--------KYHLQVCGTTPCMLRGAREVMKAIRE 164


>gi|258542718|ref|YP_003188151.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-01]
 gi|384042639|ref|YP_005481383.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-12]
 gi|384051156|ref|YP_005478219.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-03]
 gi|384054264|ref|YP_005487358.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-07]
 gi|384057498|ref|YP_005490165.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-22]
 gi|384060139|ref|YP_005499267.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-26]
 gi|384063431|ref|YP_005484073.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-32]
 gi|384119441|ref|YP_005502065.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256633796|dbj|BAH99771.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636855|dbj|BAI02824.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639908|dbj|BAI05870.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642964|dbj|BAI08919.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646019|dbj|BAI11967.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649072|dbj|BAI15013.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652059|dbj|BAI17993.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655116|dbj|BAI21043.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-12]
          Length = 213

 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 92/182 (50%), Gaps = 46/182 (25%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG------WLPISAMHYVADFLN 99
           F F  +++     ++  YP   + +AV+PLL +AQRQ G      W+P+ AM  +A  L 
Sbjct: 14  FAFDDESEAEIVNVLKKYPEERKASAVMPLLYIAQRQMGRVTGSAWIPLVAMDDIAHRLE 73

Query: 100 LPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           +  +RVYEVA+FYTMF  KPIG        +YHL  CTTTPCWLR SDA+ E  +K   +
Sbjct: 74  MAPIRVYEVASFYTMFNTKPIG--------RYHLQVCTTTPCWLRGSDAVTEACRKATGI 125

Query: 160 ---------------------------MLERQDLEPKDM-----EQIIDDLKAGKKPAPG 187
                                      +L+  D   +DM     E +I DL+AG+KP  G
Sbjct: 126 HHFGETSADGLFTLTEVECLGACANAPILQVDDDYYEDMDGPRTEALIADLRAGRKPEAG 185

Query: 188 PS 189
           P+
Sbjct: 186 PT 187


>gi|398353159|ref|YP_006398623.1| NADH-quinone oxidoreductase subunit E [Sinorhizobium fredii USDA
           257]
 gi|390128485|gb|AFL51866.1| NADH-quinone oxidoreductase subunit E [Sinorhizobium fredii USDA
           257]
          Length = 281

 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 101/203 (49%), Gaps = 43/203 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D      F F+ +N   AEA I+ YP G E++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDTVQPAAFAFSKENAAWAEATINKYPKGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  +AD L +P +R  EVATFYT F  KP+G        + H+  C TTPC LR ++ ++
Sbjct: 61  IESIADMLGMPYIRALEVATFYTQFQLKPVGS-------RAHVQVCGTTPCMLRGAEDLI 113

Query: 151 EVIKKK--------------------CN--------MMLER---QDLEPKDMEQIIDDLK 179
           +V K K                    C         +M+ +   +DL P+ +E+IID   
Sbjct: 114 KVCKTKIAAEPFTLNGSGTLSWEEVECQGACVNAPMVMIFKDAFEDLTPERLEEIIDGFD 173

Query: 180 AGKKPA--PGPS---GYTSGIGS 197
           AGK     PGP     Y++ IG 
Sbjct: 174 AGKGAEIQPGPQIDRIYSAPIGG 196


>gi|303287006|ref|XP_003062792.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455428|gb|EEH52731.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 245

 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 112/232 (48%), Gaps = 62/232 (26%)

Query: 34  HRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMH 92
           HRDT  +N  +K++FT  N      I+  YP  ++R+A+IPLLD+AQ+Q+ G+L +  M+
Sbjct: 3   HRDTPTNNDALKWDFTEANAPLVREILERYPPNYKRSAMIPLLDVAQQQNGGYLSVQVMN 62

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNS---DAI 149
            VA+ L +  +RV+EVATFY+MF R+P+G        +YH+  C TTPC LR S   +A 
Sbjct: 63  RVAEILEVAPIRVFEVATFYSMFNRQPVG--------KYHVMVCGTTPCMLRGSREVNAA 114

Query: 150 LEV---IKKKCNM--------------------MLE---------------RQDLEPKDM 171
           LE    IKK  N                     M+                 +DL P D 
Sbjct: 115 LEQHLGIKKFENTPDGMFTLGEMECMGSCVNAPMIAVADYTNGVEGYTYNYYEDLTPADA 174

Query: 172 EQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPW 223
             ++  LKAG+KP          +GSQ        E      +LT EP GP+
Sbjct: 175 VAVVKALKAGQKPR---------VGSQHR---DKAEPMGGQQTLTSEPPGPY 214


>gi|424910134|ref|ZP_18333511.1| NADH-quinone oxidoreductase, E subunit [Rhizobium leguminosarum bv.
           viciae USDA 2370]
 gi|392846165|gb|EJA98687.1| NADH-quinone oxidoreductase, E subunit [Rhizobium leguminosarum bv.
           viciae USDA 2370]
          Length = 369

 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 94/183 (51%), Gaps = 38/183 (20%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D    V F F  +N   AE  I  YP G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDQFQPVAFAFNAENTAWAEKTIKKYPEGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  VAD L++  +RV EVATFYT F  KP+G        + H+  C TTPC LR S+A++
Sbjct: 61  IEKVADMLDMAYIRVLEVATFYTQFQLKPVG-------TRAHVQVCGTTPCMLRGSEALM 113

Query: 151 EVIKKKCN---------------------------MML----ERQDLEPKDMEQIIDDLK 179
           +V +KK +                           M++      +DL P+ +E+IID  +
Sbjct: 114 DVCRKKIHHDPLHTNESGTLSWEEVECQGACVNAPMVIIFKDAYEDLTPERLEEIIDAFE 173

Query: 180 AGK 182
           AGK
Sbjct: 174 AGK 176


>gi|148284883|ref|YP_001248973.1| NADH dehydrogenase I chain E [Orientia tsutsugamushi str. Boryong]
 gi|146740322|emb|CAM80726.1| NADH dehydrogenase I chain E [Orientia tsutsugamushi str. Boryong]
          Length = 192

 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 72/112 (64%), Gaps = 9/112 (8%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKM 103
           +F F+ +    A+ II+ YP G E +AV+ +LDLAQ Q+  WL  S + YVA+ L +P +
Sbjct: 8   EFSFSNETLVIAKKIINNYPAGKEASAVLAILDLAQNQNNNWLSNSCIEYVANLLKMPYI 67

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
           +VYE+A+FYTMF  +P+G        +YH+  C TTPCWLR SD I+   KK
Sbjct: 68  KVYEIASFYTMFNLQPVG--------KYHIQICGTTPCWLRGSDDIMNFCKK 111


>gi|332185730|ref|ZP_08387477.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas sp. S17]
 gi|332014088|gb|EGI56146.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas sp. S17]
          Length = 224

 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 53/119 (44%), Positives = 71/119 (59%), Gaps = 15/119 (12%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADF 97
            F +T +N+++A  I++ YP G E++  IP LDLAQRQ        GWLP+  + +VA  
Sbjct: 19  NFAWTDENQRKANEILARYPKGREQSCSIPFLDLAQRQVGAETQTQGWLPVPVIEFVARQ 78

Query: 98  LNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           L +  MR+YEVATFYTMF   P+G        +YH+  C TTPC LR SD +L   K K
Sbjct: 79  LGVAYMRIYEVATFYTMFNLAPVG--------RYHVQVCGTTPCMLRGSDDVLAACKNK 129


>gi|408785984|ref|ZP_11197724.1| NADH dehydrogenase subunit E [Rhizobium lupini HPC(L)]
 gi|408488173|gb|EKJ96487.1| NADH dehydrogenase subunit E [Rhizobium lupini HPC(L)]
          Length = 369

 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 94/183 (51%), Gaps = 38/183 (20%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D    V F F  +N   AE  I  YP G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDQFQPVAFAFNAENTAWAEKTIKKYPEGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  VAD L++  +RV EVATFYT F  KP+G        + H+  C TTPC LR S+A++
Sbjct: 61  IEKVADMLDMAYIRVLEVATFYTQFQLKPVG-------TRAHVQVCGTTPCMLRGSEALM 113

Query: 151 EVIKKKCN---------------------------MML----ERQDLEPKDMEQIIDDLK 179
           +V +KK +                           M++      +DL P+ +E+IID  +
Sbjct: 114 DVCRKKIHHDPLHTNESGTLSWEEVECQGACVNAPMVIIFKDAYEDLTPERLEEIIDAFE 173

Query: 180 AGK 182
           AGK
Sbjct: 174 AGK 176


>gi|378825581|ref|YP_005188313.1| NADH dehydrogenase I subunit E [Sinorhizobium fredii HH103]
 gi|365178633|emb|CCE95488.1| NADH dehydrogenase I, E subunit [Sinorhizobium fredii HH103]
          Length = 276

 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 97/191 (50%), Gaps = 40/191 (20%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D      F F+ +N   AEA I+ YP G E++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDTVQPAAFAFSKENAAWAEATINKYPKGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  +AD L +  +R  EVATFYT F  KP+G        + H+  C TTPC LR ++ ++
Sbjct: 61  IESIADMLGMAYIRALEVATFYTQFQLKPVGS-------RAHVQVCGTTPCMLRGAEDLI 113

Query: 151 EVIKKK--------------------CN--------MMLER---QDLEPKDMEQIIDDLK 179
           +V KKK                    C         +M+ +   +DL P+ +E+IID   
Sbjct: 114 KVCKKKIAADPFTLNESGTLSWEEVECQGACVNAPMVMIFKDSYEDLTPERLEEIIDGFD 173

Query: 180 AGK--KPAPGP 188
           AGK  +  PGP
Sbjct: 174 AGKGAEVEPGP 184


>gi|395493002|ref|ZP_10424581.1| NADH dehydrogenase I chain E [Sphingomonas sp. PAMC 26617]
          Length = 222

 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 70/118 (59%), Gaps = 15/118 (12%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADFL 98
           F +  +N+K+A  I+  YP G E++A IP LDLAQRQ        GWLP+  + +VA  +
Sbjct: 20  FAWNDENQKKANEILGRYPKGREQSASIPFLDLAQRQVGAETQTQGWLPVPVIEFVARQI 79

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
            +P MRVYEVATFYTMF   P+G        ++H+  C TTPC L  SD +L   K K
Sbjct: 80  GVPYMRVYEVATFYTMFNMAPVG--------RFHVQVCGTTPCLLGGSDDVLAACKNK 129


>gi|308814238|ref|XP_003084424.1| putative NADH-ubiquinone oxidoreductase (ISS) [Ostreococcus tauri]
 gi|116056309|emb|CAL56692.1| putative NADH-ubiquinone oxidoreductase (ISS) [Ostreococcus tauri]
          Length = 265

 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 116/254 (45%), Gaps = 62/254 (24%)

Query: 17  VRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLL 76
           V +  T  R       VHRD  +DN  + + F    + + +AI+  YP  ++R+A+IPLL
Sbjct: 10  VATARTRARAYSVGQMVHRDVPEDNSTMTWTFEASVRPKVDAILRRYPSNYKRSAMIPLL 69

Query: 77  DLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNW 135
           DLAQ+Q+ G L ++ M+++AD L +  +RVYEVATFY+MF R+ +G        + H+  
Sbjct: 70  DLAQQQNKGHLTLAMMNHIADVLEVAPIRVYEVATFYSMFNRQKMG--------KLHVMV 121

Query: 136 CTTTPCWLRNSDAILEVIKK----------KCNMML------------------------ 161
           C TTPC LR S  I + +++           C                            
Sbjct: 122 CGTTPCMLRGSREIEKALEEWMGVKKFETTACGTFTLGEMECMGCCVNAPMIAVADYRNG 181

Query: 162 -------ERQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTS 214
                    +DL P+   ++ + LKAGK P          +GSQ        E    +T+
Sbjct: 182 VEGYSYNYYEDLTPQTAVKVCEALKAGKSPR---------VGSQ---IRDKAEPIKGLTT 229

Query: 215 LTGEPHGPWDSKRD 228
           LTG+P GP+    D
Sbjct: 230 LTGDPSGPFSRDLD 243


>gi|402827196|ref|ZP_10876299.1| NADH dehydrogenase I subunit E [Sphingomonas sp. LH128]
 gi|402259296|gb|EJU09556.1| NADH dehydrogenase I subunit E [Sphingomonas sp. LH128]
          Length = 222

 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/119 (46%), Positives = 73/119 (61%), Gaps = 15/119 (12%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADF 97
            F +T  N  +A+ I++ YP G +R+AV+PLLDLAQRQ        GWLPI  M YVA  
Sbjct: 19  NFAWTEANAAKAKDIVARYPEGRQRSAVMPLLDLAQRQVGAEENTQGWLPIPVMEYVAAE 78

Query: 98  LNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           L++P +RV EVA+FYTM+   PIG        ++H+  C TTPC LR SD +L   K +
Sbjct: 79  LDMPIIRVVEVASFYTMYNIAPIG--------RFHVQVCGTTPCMLRGSDDLLATCKSR 129


>gi|153009747|ref|YP_001370962.1| NADH dehydrogenase subunit E [Ochrobactrum anthropi ATCC 49188]
 gi|404320276|ref|ZP_10968209.1| NADH dehydrogenase subunit E [Ochrobactrum anthropi CTS-325]
 gi|151561635|gb|ABS15133.1| NADH-quinone oxidoreductase, E subunit [Ochrobactrum anthropi ATCC
           49188]
          Length = 385

 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 105/217 (48%), Gaps = 47/217 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R   D      F F  +N+  A   I+ +P G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLADDAVQPAAFAFNAENQAWAHKTIAKFPEGRQQSAVIPLLMRAQEQDGWVTKAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + +VA  L +P +RV EVATFYT F  KP+G        + H+  C TTPC LR S+A++
Sbjct: 61  IEHVAGMLEMPLIRVLEVATFYTQFQLKPVG-------TRAHIQVCGTTPCMLRGSEALM 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
           +V + K N                            +M+ +   +DL P+ + +IID  +
Sbjct: 114 DVCRHKINHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFE 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLT 216
           AGK       G T   G Q GR     E  + +T+LT
Sbjct: 174 AGK-------GDTVKPGPQDGRVTS--EPINGLTALT 201


>gi|402819266|ref|ZP_10868835.1| hypothetical protein IMCC14465_00690 [alpha proteobacterium
           IMCC14465]
 gi|402511970|gb|EJW22230.1| hypothetical protein IMCC14465_00690 [alpha proteobacterium
           IMCC14465]
          Length = 202

 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 53/111 (47%), Positives = 72/111 (64%), Gaps = 9/111 (8%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMHYVADFLNLPKMR 104
           F F+ +N   A+  I+ YP G + +A+IPLL  AQ+Q  GWLP  A+ YVADFL++P MR
Sbjct: 14  FAFSKENTSWAKKQIAKYPEGRQASAIIPLLWQAQKQAGGWLPEPAIRYVADFLDMPHMR 73

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
             EVATFYTMF  +P+GE        + +  C TTPCWLR +D + +V +K
Sbjct: 74  AMEVATFYTMFNLEPVGE--------HFVQLCGTTPCWLRGADNLKDVCRK 116


>gi|341615280|ref|ZP_08702149.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit
           [Citromicrobium sp. JLT1363]
          Length = 222

 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 95/188 (50%), Gaps = 48/188 (25%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADFL 98
           F F+P+ + +A+  ++ YP G  ++AV+PLLDLAQRQ        GWLP+  + YVA++L
Sbjct: 20  FAFSPEYEAKAKKALARYPEGRSKSAVMPLLDLAQRQVGEETDTQGWLPLPVIEYVANYL 79

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN 158
           ++P +RV EVATFY M+   P+G        +YH+  C TTPC LR SD I+   K +  
Sbjct: 80  DMPVIRVLEVATFYFMYNLVPVG--------KYHVQVCGTTPCMLRGSDDIIAACKARGM 131

Query: 159 MMLE------------------------------RQDLEPKDMEQIIDDLKAGKKPAPG- 187
              E                               +DL P+ ++ ++D L  G++P  G 
Sbjct: 132 KKGEVSEDGLWTLTEVECMGNCATAPMVQINDDNYEDLTPERLDAVLDALAKGEQPKTGT 191

Query: 188 --PSGYTS 193
             P  +TS
Sbjct: 192 QEPGRHTS 199


>gi|121602159|ref|YP_989074.1| NADH dehydrogenase subunit E [Bartonella bacilliformis KC583]
 gi|421760880|ref|ZP_16197691.1| NADH dehydrogenase subunit E [Bartonella bacilliformis INS]
 gi|120614336|gb|ABM44937.1| NADH dehydrogenase (quinone), E subunit [Bartonella bacilliformis
           KC583]
 gi|411174111|gb|EKS44147.1| NADH dehydrogenase subunit E [Bartonella bacilliformis INS]
          Length = 225

 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 110/217 (50%), Gaps = 47/217 (21%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMH 92
           V R   D +   +F FT +N+  A+  I+ YP+G E++AVIPLL  AQ Q GW+  +A+ 
Sbjct: 3   VRRLADDIHQPEEFSFTKENQLWAQNTIAKYPIGREQSAVIPLLMRAQEQEGWVTRAAIE 62

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV 152
           ++A  L++  +RV EVATFYT F  KP+G        + H+  C TTPC LR S  ++++
Sbjct: 63  HIAQMLSMAYIRVLEVATFYTQFQLKPVG-------TRAHIQVCGTTPCMLRGSTELIKI 115

Query: 153 IKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLKAG 181
            +KK +                            +M+ +   +DL  + +E+IID  +A 
Sbjct: 116 CQKKIHPEPFVTNQEGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAN 175

Query: 182 KKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGE 218
           K       G+   +G Q+ R  ++ E  + +TSL  E
Sbjct: 176 K-------GFEVAVGPQNSR--KSSEPINGLTSLINE 203


>gi|357977049|ref|ZP_09141020.1| NADH dehydrogenase I chain E [Sphingomonas sp. KC8]
          Length = 222

 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 71/118 (60%), Gaps = 15/118 (12%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADFL 98
           F ++  N+  A+ II+ YP G + +A++PLLDLAQRQ        GWLP+  + YVA  +
Sbjct: 20  FAWSDVNEANAKGIIARYPPGRQHSAIMPLLDLAQRQVGAETQTQGWLPVPVIEYVAKQI 79

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           ++P MR YEVATFYTM+   P+G        +YH+  C TTPC LR SD +    K K
Sbjct: 80  SMPYMRAYEVATFYTMYNLAPVG--------RYHVQVCGTTPCMLRGSDDVFAACKAK 129


>gi|150396116|ref|YP_001326583.1| NADH dehydrogenase subunit E [Sinorhizobium medicae WSM419]
 gi|150027631|gb|ABR59748.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium medicae
           WSM419]
          Length = 273

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 102/203 (50%), Gaps = 43/203 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D      F F+ +N   AEA I  YP G E++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDTVQPATFAFSKENAAWAEATIKKYPEGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  +AD L +  +RV EVATFYT F  +P+G        + H+  C TTPC LR ++ ++
Sbjct: 61  IEKIADMLGMAYIRVLEVATFYTQFQLQPVG-------TRAHVQVCGTTPCMLRGAEDLI 113

Query: 151 EVIKKK--------------------CN--------MMLER---QDLEPKDMEQIIDDLK 179
           +V KKK                    C         +M+ +   +DL P+ +E+IID  +
Sbjct: 114 KVCKKKIAGDPFTLNEGGTLSWEEVECQGACVNAPMVMIFKDTFEDLTPERLEEIIDLFE 173

Query: 180 AGKKP--APGPS---GYTSGIGS 197
           AGK     PGP     Y++ IG 
Sbjct: 174 AGKGTDVVPGPQIDRIYSAPIGG 196


>gi|227821622|ref|YP_002825592.1| NADH dehydrogenase subunit E [Sinorhizobium fredii NGR234]
 gi|227340621|gb|ACP24839.1| NADH dehydrogenase I chain E [Sinorhizobium fredii NGR234]
          Length = 276

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 96/191 (50%), Gaps = 40/191 (20%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D      F F+ +N   AEA I+ YP G E++A+IPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDTVQPAAFAFSKENAAWAEATINKYPKGREQSAIIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  +AD L +  +R  EVATFYT F  KP+G        + H+  C TTPC LR ++ ++
Sbjct: 61  IESIADMLGMAYIRALEVATFYTQFQLKPVGS-------RAHVQVCGTTPCMLRGAEDLI 113

Query: 151 EVIKKK--------------------CN--------MMLER---QDLEPKDMEQIIDDLK 179
           +V KKK                    C         +M+ +   +DL P+ +E+IID   
Sbjct: 114 KVCKKKIAADPFTLNESGTLSWEEVECQGACVNAPMVMIFKDSYEDLTPERLEEIIDGFD 173

Query: 180 AGKKP--APGP 188
           AGK     PGP
Sbjct: 174 AGKGAEIEPGP 184


>gi|91761993|ref|ZP_01263958.1| NADH Dehydrogenase I Chain E [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91717795|gb|EAS84445.1| NADH Dehydrogenase I Chain E [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 202

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 96/175 (54%), Gaps = 40/175 (22%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKM 103
           KFEFT D+   A+ +IS YP G +++AV+ LL +AQ+Q+  W+P++AM Y+  FL++P +
Sbjct: 13  KFEFTADSLAAAKEMISKYPEGKQQSAVMALLYIAQKQNDNWIPLAAMKYIGKFLDMPYI 72

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK------- 156
           +VYEVATFYTM+   P+G        ++ +  CTTTPC +R +  ++E  K+K       
Sbjct: 73  KVYEVATFYTMYNLSPVG--------KHFIQVCTTTPCMIRGAYKLVEACKEKISENENE 124

Query: 157 ------CNMMLER------------------QDLEPKDMEQIIDDLKAGKKPAPG 187
                 C+ M                     +DL+ +   +I+D++  GK P PG
Sbjct: 125 LSTNKSCSWMEVECLGACVNAPMMQINDDYYEDLDKEKTLKILDEILDGKTPKPG 179


>gi|423715497|ref|ZP_17689721.1| NADH-quinone oxidoreductase subunit E 1 [Bartonella elizabethae
           F9251]
 gi|395429624|gb|EJF95685.1| NADH-quinone oxidoreductase subunit E 1 [Bartonella elizabethae
           F9251]
          Length = 224

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 108/216 (50%), Gaps = 47/216 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R   D     +F FT +N+   ++ I  YPVG E++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLADDVYQPTEFSFTKENQIWVKSTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + ++A  L++  +RV EVATFYT F  KP+G        + H+  C TTPC LR SD ++
Sbjct: 61  IEHIAQILSMAYIRVLEVATFYTQFQLKPVG-------TKAHIQVCGTTPCMLRGSDELI 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
           +V +KK +                            +M+ +   +DL  + +E+IID  +
Sbjct: 114 KVCQKKIHHEPFTTNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFE 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSL 215
           AGK       G    +G Q+ R  ++ E    +TSL
Sbjct: 174 AGK-------GSEITVGPQNSR--KSSEPISGLTSL 200


>gi|319404255|emb|CBI77848.1| NADH dehydrogenase I, E subunit [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 225

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 104/205 (50%), Gaps = 47/205 (22%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR 104
           +F FT +N+   +  I  YPVG E++AVIPLL  AQ Q GW+  +A+ ++A+ L++  +R
Sbjct: 15  EFSFTKENQVWVQNTIKKYPVGREQSAVIPLLMRAQEQEGWVTRAAIEHIAEILSMAYIR 74

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN------ 158
           V EVATFYT F  KP+G        + H+  C TTPC LR S  +++V +KK +      
Sbjct: 75  VLEVATFYTQFQLKPVG-------TKAHIQVCGTTPCMLRGSGELIKVCQKKIHDKPFVT 127

Query: 159 ----------------------MMLER---QDLEPKDMEQIIDDLKAGKKPAPGPSGYTS 193
                                 +M+ +   +DL  + +E+IID  +AGK       G   
Sbjct: 128 NQSGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGK-------GSNI 180

Query: 194 GIGSQSGRFCQAREAYHDMTSLTGE 218
            +G Q+ R  ++ E    +TSL  E
Sbjct: 181 AVGPQNNR--KSSEPISGLTSLVDE 203


>gi|393725296|ref|ZP_10345223.1| NADH dehydrogenase I chain E [Sphingomonas sp. PAMC 26605]
          Length = 226

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 70/118 (59%), Gaps = 15/118 (12%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADFL 98
           F +T +N+ +A  I+  YP G E++A +PLLDLAQRQ        GWLP+  + +VA  +
Sbjct: 20  FAWTEENQTKANEILGRYPKGREQSASLPLLDLAQRQVGAETQTQGWLPVPVIEFVARQI 79

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
            +P MRVYEV +FYTMF   P+G        +YH+  C TTPC L  SD +L   K K
Sbjct: 80  GVPYMRVYEVVSFYTMFNMAPVG--------RYHVQVCGTTPCLLGGSDDVLSACKNK 129


>gi|71083586|ref|YP_266305.1| NADH dehydrogenase I subunit E [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062699|gb|AAZ21702.1| NADH Dehydrogenase I Chain E [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 202

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 96/175 (54%), Gaps = 40/175 (22%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKM 103
           KFEFT D+   A+ +IS YP G +++AV+ LL +AQ+Q+  W+P++AM Y+  FL++P +
Sbjct: 13  KFEFTADSLAAAKEMISKYPEGKQQSAVMALLYIAQKQNDNWIPLAAMKYIGKFLDMPYI 72

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK------- 156
           +VYEVATFYTM+   P+G        ++ +  CTTTPC +R +  ++E  K+K       
Sbjct: 73  KVYEVATFYTMYNLSPVG--------KHFIQVCTTTPCMIRGAYKLVEACKEKISENENE 124

Query: 157 ------CNMMLER------------------QDLEPKDMEQIIDDLKAGKKPAPG 187
                 C+ M                     +DL+ +   +I+D++  GK P PG
Sbjct: 125 LSTDKSCSWMEVECLGACVNAPMMQINDDYYEDLDKEKTLKILDEILDGKTPKPG 179


>gi|114707372|ref|ZP_01440269.1| NADH dehydrogenase subunit E [Fulvimarina pelagi HTCC2506]
 gi|114537253|gb|EAU40380.1| NADH dehydrogenase subunit E [Fulvimarina pelagi HTCC2506]
          Length = 500

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 97/187 (51%), Gaps = 45/187 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FT +N   A+A +  YP G +++AVIPLL  AQ Q GW+  +A+ +VAD L +P +RV
Sbjct: 16  FAFTDENAAWADATVRKYPEGRQQSAVIPLLMRAQDQEGWVTKAAVEHVADRLKMPLIRV 75

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN------- 158
            EVATFYT F+ +PIG        + H+  C TTPC LR ++ +  V KKK +       
Sbjct: 76  LEVATFYTQFMLQPIG-------TRAHVQVCGTTPCMLRGAEDLKAVCKKKIHPVPFHRN 128

Query: 159 ---------------------MMLER---QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                                +M+ +   +DL P+ +E+IID+ +AG       +G    
Sbjct: 129 SSGTLSWEEVECQGACVNAPMVMIFKDAYEDLTPERLEEIIDEFEAG-------NGANVT 181

Query: 195 IGSQSGR 201
            G Q+GR
Sbjct: 182 TGPQNGR 188


>gi|395781507|ref|ZP_10461925.1| NADH-quinone oxidoreductase subunit E 1 [Bartonella
           rattimassiliensis 15908]
 gi|395420940|gb|EJF87198.1| NADH-quinone oxidoreductase subunit E 1 [Bartonella
           rattimassiliensis 15908]
          Length = 223

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 107/216 (49%), Gaps = 47/216 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R   D     +F FT +N+   +  I  YPVG E++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLADDVYQPAEFSFTKENQIWVKNTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + ++A  L++  +RV EVATFYT F  KP+G        + H+  C TTPC LR SD ++
Sbjct: 61  IEHIAQILSMAYIRVLEVATFYTQFQLKPVG-------TKAHIQVCGTTPCMLRGSDELI 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
           +V +KK +                            +M+ +   +DL  + +E+IID  +
Sbjct: 114 KVCQKKIHHEPFATNQAGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFE 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSL 215
           AGK       G    +G Q+ R  ++ E    +TSL
Sbjct: 174 AGK-------GSEIAVGPQNSR--KSSEPISGLTSL 200


>gi|319407263|emb|CBI80902.1| NADH dehydrogenase I, E subunit [Bartonella sp. 1-1C]
          Length = 223

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 104/205 (50%), Gaps = 47/205 (22%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR 104
           +F FT +N+   +  I  YPVG E++AVIPLL  AQ Q GW+  +A+ ++A+ L++  +R
Sbjct: 15  EFSFTKENQVWVQNTIKKYPVGREQSAVIPLLMRAQEQEGWVTRAAIEHIAEILSMAYIR 74

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN------ 158
           V EVATFYT F  KP+G        + H+  C TTPC LR S  +++V +KK +      
Sbjct: 75  VLEVATFYTQFQLKPVG-------TKAHIQVCGTTPCMLRGSGELIKVCQKKIHDKPFVT 127

Query: 159 ----------------------MMLER---QDLEPKDMEQIIDDLKAGKKPAPGPSGYTS 193
                                 +M+ +   +DL  + +E+IID  +AGK       G   
Sbjct: 128 NQSGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGK-------GSNI 180

Query: 194 GIGSQSGRFCQAREAYHDMTSLTGE 218
            +G Q+ R  ++ E    +TSL  E
Sbjct: 181 AVGPQNNR--KSSEPISGLTSLVDE 203


>gi|421850283|ref|ZP_16283246.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus NBRC
           101655]
 gi|371458875|dbj|GAB28449.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus NBRC
           101655]
          Length = 213

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 91/182 (50%), Gaps = 46/182 (25%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG------WLPISAMHYVADFLN 99
           F F  +++     ++  YP   + +AV+PLL +AQRQ G      W+P+ AM  +A  L 
Sbjct: 14  FAFDDESEAEIVNVLKKYPEERKASAVMPLLYIAQRQMGRVTGSAWIPLVAMDDIARRLE 73

Query: 100 LPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           +  +RVYEVA+FYTMF  KPIG        +YHL  CTTTPCWLR SD + E  +K   +
Sbjct: 74  MAPIRVYEVASFYTMFNTKPIG--------RYHLQVCTTTPCWLRGSDVVTEACRKATGI 125

Query: 160 ---------------------------MLERQDLEPKDM-----EQIIDDLKAGKKPAPG 187
                                      +L+  D   +DM     E +I DL+AG+KP  G
Sbjct: 126 HHFGETSADGVFTLTEVECLGACANAPILQVDDDYYEDMDGPRTEALIADLRAGRKPEAG 185

Query: 188 PS 189
           P+
Sbjct: 186 PA 187


>gi|323138149|ref|ZP_08073222.1| NADH-quinone oxidoreductase, E subunit [Methylocystis sp. ATCC
           49242]
 gi|322396611|gb|EFX99139.1| NADH-quinone oxidoreductase, E subunit [Methylocystis sp. ATCC
           49242]
          Length = 202

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 106/211 (50%), Gaps = 49/211 (23%)

Query: 40  DNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFL 98
           +N    FEFT +NK   E  I+ YP G + +AV+P L  AQ+Q+  WLP  A+  VA+ L
Sbjct: 8   ENQPGSFEFTAENKAWLEKQIAKYPDGRQASAVVPALWQAQKQNNYWLPQKAIEKVAETL 67

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK-- 156
            +PK+RV EVATFYTMF  +P+G        +Y++  C TTPC L  SD +++V++++  
Sbjct: 68  GMPKIRVLEVATFYTMFNLEPVG--------KYYIQLCGTTPCMLCGSDDLIKVLERRVG 119

Query: 157 ----------------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGP 188
                                 CN  + +      +DL  ++ E+++DDL AG+      
Sbjct: 120 PQRKVTADGMFSWLEVECLGACCNAPMVQINDDYYEDLTAENFEKLLDDLAAGR------ 173

Query: 189 SGYTSGIGSQSGRFCQARE-AYHDMTSLTGE 218
                  GSQ GR     E     +TSL G+
Sbjct: 174 ---PVKTGSQKGRVSSEPEGGLTSLTSLYGQ 201


>gi|421853772|ref|ZP_16286431.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus
           subsp. pasteurianus LMG 1262 = NBRC 106471]
 gi|371477990|dbj|GAB31634.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus
           subsp. pasteurianus LMG 1262 = NBRC 106471]
          Length = 213

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 91/182 (50%), Gaps = 46/182 (25%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG------WLPISAMHYVADFLN 99
           F F  +++     ++  YP   + +AV+PLL +AQRQ G      W+P+ AM  +A  L 
Sbjct: 14  FAFDDESEAEIVNVLKKYPEERKASAVMPLLYIAQRQMGRVTGSAWIPLVAMDDIARRLE 73

Query: 100 LPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           +  +RVYEVA+FYTMF  KPIG        +YHL  CTTTPCWLR SD + E  +K   +
Sbjct: 74  MAPIRVYEVASFYTMFNTKPIG--------RYHLQVCTTTPCWLRGSDVVTEACRKATGI 125

Query: 160 ---------------------------MLERQDLEPKDM-----EQIIDDLKAGKKPAPG 187
                                      +L+  D   +DM     E +I DL+AG+KP  G
Sbjct: 126 HHFGETSADGLFTLTEVECLGACANAPILQVDDDYYEDMDGPRTEALIADLRAGRKPEAG 185

Query: 188 PS 189
           P+
Sbjct: 186 PA 187


>gi|399059564|ref|ZP_10745180.1| NADH-quinone oxidoreductase, E subunit [Novosphingobium sp. AP12]
 gi|398039271|gb|EJL32410.1| NADH-quinone oxidoreductase, E subunit [Novosphingobium sp. AP12]
          Length = 222

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 98/210 (46%), Gaps = 48/210 (22%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADF 97
            F +T  N  +A+ I+S YP G +R+AV+P LDLAQRQ        GWLPI  M ++A  
Sbjct: 19  NFAWTEANAAKAKDILSRYPDGRQRSAVMPFLDLAQRQVGAELNTQGWLPIPVMEFIAAE 78

Query: 98  LNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIK--- 154
           L +P +RV EVA+FYTM+   PIG        ++H+  C TTPC LR SD I+E  K   
Sbjct: 79  LAMPVIRVVEVASFYTMYNIAPIG--------RFHVQVCGTTPCMLRGSDDIIETCKSRG 130

Query: 155 -KKCNMMLER--------------------------QDLEPKDMEQIIDDLKAGKKPAPG 187
            KK +   +                           +DL P+ M  ++D L  G+ P  G
Sbjct: 131 MKKGHTTADGMWSFTEVECMGNCASAPMVQINDDNFEDLTPERMNAVLDALARGESPKAG 190

Query: 188 ---PSGYTSGIGSQSGRFCQAREAYHDMTS 214
              P+ +T     +         A HD  S
Sbjct: 191 TQDPARHTVEPVGEPTNLAAMVSANHDYRS 220


>gi|254796983|ref|YP_003081820.1| NADH dehydrogenase subunit E [Neorickettsia risticii str. Illinois]
 gi|254590224|gb|ACT69586.1| NADH-quinone oxidoreductase chain e [Neorickettsia risticii str.
           Illinois]
          Length = 172

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 73/116 (62%), Gaps = 9/116 (7%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKM 103
           KF F+ +N +    I++ YP   +R+A++PLL L Q+QH  W+PI+AM +VA  L LP +
Sbjct: 14  KFWFSEENSQEVARILAKYPASRKRSAILPLLHLVQKQHENWIPIAAMDHVAQLLGLPAI 73

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           +VYEV +FY+MF   P+G+  I+         C TTPCWLR SD + +  K++  +
Sbjct: 74  KVYEVVSFYSMFNTAPVGKHTIRV--------CRTTPCWLRGSDCLTKAAKRELGI 121


>gi|145505141|ref|XP_001438537.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124405709|emb|CAK71140.1| unnamed protein product [Paramecium tetraurelia]
          Length = 263

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 108/206 (52%), Gaps = 51/206 (24%)

Query: 31  LFVHRDTKDDNLD-VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-HGWLPI 88
           +FV    +DDN D V F+FT +N K+ E I++ +P   +++  IPLL LAQ+Q + +L +
Sbjct: 20  VFVAHRNRDDNSDSVPFDFTDENYKKIEVILAKFPSNEKKSGTIPLLMLAQKQNNNFLSL 79

Query: 89  SAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDA 148
           +AM  +A  L +P+M V+E A+FY+MF R+ +G        ++HL  C TTPC L  S  
Sbjct: 80  TAMKKIAKILEIPEMDVFETASFYSMFNRERVG--------KFHLQVCGTTPCQLCGSRD 131

Query: 149 ILEVIKKKCNM--------------------------MLE------RQDLEPKDMEQIID 176
           I++ I++K N+                          M++       +DL P++  ++++
Sbjct: 132 IMKAIEQKLNIKNGETSADGLFTLQEVECLGACANAPMIQVNNEWVYEDLTPENTLKLLE 191

Query: 177 DLK---------AGKKPAPGPSGYTS 193
           DLK          G+K A GP G T+
Sbjct: 192 DLKNGTDKKGPQNGRKNAEGPQGRTT 217


>gi|347758128|ref|YP_004865690.1| NADH dehydrogenase flavoprotein 2 [Micavibrio aeruginosavorus
           ARL-13]
 gi|347590646|gb|AEP09688.1| NADH dehydrogenase flavoprotein 2 [Micavibrio aeruginosavorus
           ARL-13]
          Length = 217

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 103/216 (47%), Gaps = 65/216 (30%)

Query: 41  NLDVKFEFTPDN-----KKRAEAIISIYPVGHERAAVIPLLDLAQRQ------------H 83
           ++D+  ++ P+N       + E IIS YP G +R+A +PLLDLAQRQ             
Sbjct: 4   HVDLNADYQPENFTFRDTAQVEEIISRYPEGRQRSATMPLLDLAQRQMAEDGAKATPPFG 63

Query: 84  GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL 143
           GW+P +AM  +A  L+LPK++VYEVATFY+M+   P+G        +Y +  CTTTPCWL
Sbjct: 64  GWIPRAAMDEIARILDLPKIKVYEVATFYSMYNLAPVG--------KYLVQVCTTTPCWL 115

Query: 144 --------------------RNSDAILEVIKKKC------NMMLE-----RQDLEPKDME 172
                                  D +  V++ +C        M++      +DL P  M+
Sbjct: 116 CGAGDIKKACEDHLGIKTGENTKDGMFTVVEVECLGACVNAPMIQINDDFYEDLSPLRMK 175

Query: 173 QIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREA 208
            I+  LK GK            +GSQ+GR C    A
Sbjct: 176 DILSALKDGKDVP---------VGSQTGRKCSMSAA 202


>gi|255083723|ref|XP_002508436.1| predicted protein [Micromonas sp. RCC299]
 gi|226523713|gb|ACO69694.1| predicted protein [Micromonas sp. RCC299]
          Length = 249

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 107/232 (46%), Gaps = 62/232 (26%)

Query: 34  HRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQR-QHGWLPISAMH 92
           HRDT D+N  + ++F          I+  YP  ++R+A+IPLLD+AQ+   G+L + AM+
Sbjct: 7   HRDTPDNNDSLSWDFPEAAMPTVHKILERYPPNYKRSAMIPLLDVAQQANQGYLSVQAMN 66

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNS------ 146
            VA+ L +  +RVYEVATFY+MF R  +G        +YH+  C TTPC LR S      
Sbjct: 67  RVAEMLEVAPIRVYEVATFYSMFNRTKVG--------KYHVMVCGTTPCMLRGSRDIEKA 118

Query: 147 --------------DAILEVIKKKC-----NMML----------------ERQDLEPKDM 171
                         D +  + + +C     N  +                  +DL P D 
Sbjct: 119 LSDYMGVKKFESTPDGVFTLGEMECMGCCVNAPMIAVADYSNGVEGYSYNYYEDLTPADA 178

Query: 172 EQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPW 223
             ++  LKAG+KP          +GSQ        E     T+LTGEP GP+
Sbjct: 179 VAVVKALKAGQKPR---------VGSQHR---DKAEPMGGQTTLTGEPRGPY 218


>gi|329114682|ref|ZP_08243441.1| NADH-quinone oxidoreductase subunit E [Acetobacter pomorum DM001]
 gi|326696162|gb|EGE47844.1| NADH-quinone oxidoreductase subunit E [Acetobacter pomorum DM001]
          Length = 213

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 92/182 (50%), Gaps = 48/182 (26%)

Query: 48  FTPDNKKRAEAI--ISIYPVGHERAAVIPLLDLAQRQHG------WLPISAMHYVADFLN 99
           F  D++  AE +  +  YP   + +AV+PLL +AQRQ G      W+P+ AM  +A  L 
Sbjct: 14  FVFDDESEAEIVNVLKKYPEERKASAVMPLLYIAQRQMGRVTGSAWIPLVAMDDIAHRLE 73

Query: 100 LPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           +  +RVYEVA+FYTMF  KPIG        +YHL  CTTTPCWLR SDA+ E  +K   +
Sbjct: 74  MAPIRVYEVASFYTMFNTKPIG--------RYHLQVCTTTPCWLRGSDAVTEACRKATGI 125

Query: 160 ---------------------------MLERQDLEPKDM-----EQIIDDLKAGKKPAPG 187
                                      +L+  D   +DM     E +I DL+AG+ P  G
Sbjct: 126 HHFGETSDDGLFTLTEVECLGACANAPILQVDDDYYEDMDGPRTEALIADLRAGRHPEAG 185

Query: 188 PS 189
           P+
Sbjct: 186 PA 187


>gi|383644207|ref|ZP_09956613.1| NADH-quinone oxidoreductase subunit E [Sphingomonas elodea ATCC
           31461]
          Length = 222

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 15/119 (12%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-------HGWLPISAMHYVADF 97
            F +TP N ++A  I++ YP G + +  IP LDLAQRQ        GWLP+  + ++A  
Sbjct: 19  NFAWTPANAEKAREIMARYPAGRQMSCTIPFLDLAQRQVGAETNTQGWLPVPVIEFIARE 78

Query: 98  LNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           L++P +RV+EVATFYTMF   P+G        +YH+  C TTPC LR SD ++   K +
Sbjct: 79  LDMPYIRVFEVATFYTMFNLVPVG--------RYHVQVCGTTPCMLRGSDDVMAACKSR 129


>gi|218681069|ref|ZP_03528966.1| NADH dehydrogenase subunit E [Rhizobium etli CIAT 894]
          Length = 322

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 103/219 (47%), Gaps = 47/219 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D      F F+ +N   A+  I  YP G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  +AD L++  +RV EVATFYT F   P+G        + H+  C TTPC LR S+A++
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVG-------TRAHVQVCGTTPCMLRGSEALM 113

Query: 151 EVIKKKCNM-MLER------------------------------QDLEPKDMEQIIDDLK 179
            V K K +    ER                              +DL P+ +E+IID   
Sbjct: 114 SVCKSKIHAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPERLEEIIDTFA 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGE 218
           AG       +G +   G+Q  R   A E    +TSLT E
Sbjct: 174 AG-------NGASIKPGTQIDRIFSAPEG--GLTSLTTE 203


>gi|395778246|ref|ZP_10458758.1| NADH-quinone oxidoreductase subunit E 1 [Bartonella elizabethae
           Re6043vi]
 gi|395417454|gb|EJF83791.1| NADH-quinone oxidoreductase subunit E 1 [Bartonella elizabethae
           Re6043vi]
          Length = 224

 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 107/216 (49%), Gaps = 47/216 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R   D     +F FT +N+   +  I  YPVG E++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLADDVYQPAEFSFTKENQIWVKNTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + ++A  L++  +RV EVATFYT F  KP+G        + H+  C TTPC LR SD ++
Sbjct: 61  IEHIAQILSMAYIRVLEVATFYTQFQLKPVG-------TKAHIQVCGTTPCMLRGSDELI 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
           +V +KK +                            +M+ +   +DL  + +E+IID  +
Sbjct: 114 KVCQKKIHHEPFTTNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFE 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSL 215
           AGK       G    +G Q+ R  ++ E    +TSL
Sbjct: 174 AGK-------GSEITVGPQNSR--KSSEPISGLTSL 200


>gi|254420651|ref|ZP_05034375.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
           [Brevundimonas sp. BAL3]
 gi|196186828|gb|EDX81804.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
           [Brevundimonas sp. BAL3]
          Length = 225

 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 88/172 (51%), Gaps = 37/172 (21%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F F+ D   +AE  I  YP    ++AVIP+L L Q+Q GW+   A+  + + L +P +RV
Sbjct: 14  FAFSADTTAKAEWWIKKYPESRRQSAVIPILWLVQKQEGWVSEPAIRAIGELLGMPFIRV 73

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVATFYTMF+ +P+G+  +  +       C TTPC LR ++ +++V K+K         
Sbjct: 74  LEVATFYTMFMLEPVGKTALIQV-------CGTTPCMLRGANELMKVCKEKIGPKDHLSA 126

Query: 157 ---------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPG 187
                           N  + +      +DL P+ + QIIDD  AGK P PG
Sbjct: 127 DGRFTWQEVECLGACSNAPMAQINDYYFEDLTPESLAQIIDDFAAGKTPKPG 178


>gi|254500422|ref|ZP_05112573.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
           [Labrenzia alexandrii DFL-11]
 gi|222436493|gb|EEE43172.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
           [Labrenzia alexandrii DFL-11]
          Length = 418

 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 100/209 (47%), Gaps = 49/209 (23%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMR 104
           FEFT +N   A+ +I  YP G + +AVIPLL  AQ Q+ GW+   A+ Y+AD L++P +R
Sbjct: 14  FEFTEENLGWAKKLIDRYPAGRQASAVIPLLWRAQEQNDGWVSEPAIRYIADLLDMPNIR 73

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER- 163
           V EVATFYTMF  +P+G+       + H+  C TTPC LR S+ ++++ K +    +   
Sbjct: 74  VLEVATFYTMFQLQPVGK-------KAHIQVCGTTPCQLRGSEDLIKICKSRIAKHMHEI 126

Query: 164 ------------------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTS 193
                                         +DL  +   +++DD+ AG    PGP     
Sbjct: 127 SEDGMFSWEEVECLGACVNAPMVQIFKDTYEDLTEESFNKLLDDIDAGNDVTPGP----- 181

Query: 194 GIGSQSG-RFCQAREAYHDMTSLTGEPHG 221
               Q+G RF  A      +T +  +  G
Sbjct: 182 ----QNGRRFSMAEGGQTSLTEIEDDTKG 206


>gi|49475654|ref|YP_033695.1| NADH dehydrogenase subunit E [Bartonella henselae str. Houston-1]
 gi|49238461|emb|CAF27689.1| NADH dehydrogenase I, E subunit [Bartonella henselae str.
           Houston-1]
          Length = 222

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 108/219 (49%), Gaps = 47/219 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R   D     +F FT +N+   +  I  YPVG E++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLADDVYQPAEFSFTKENQIWVKNTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + ++A  L++  +RV E+ATFYT F  +P+G        + H+  C TTPC LR S+ ++
Sbjct: 61  IEHIAQILSMAYIRVLEIATFYTQFQLQPVG-------TKAHIQVCGTTPCMLRGSEELI 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
           +V +KK +                            +M+ +   +DL  K +E+IID  +
Sbjct: 114 KVCQKKIHHKPFVTNQDGSLSWEEVECLGACVNAPMVMIFKDTYEDLTAKRLEEIIDAFE 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGE 218
           AGK       G    +G Q+ R  ++ E    +TSL  E
Sbjct: 174 AGK-------GAEIAVGPQNSR--KSSEPISGLTSLIDE 203


>gi|240850587|ref|YP_002971987.1| NADH dehydrogenase I subunit E [Bartonella grahamii as4aup]
 gi|240267710|gb|ACS51298.1| NADH dehydrogenase I subunit E [Bartonella grahamii as4aup]
          Length = 217

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 105/214 (49%), Gaps = 47/214 (21%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMH 92
           V R   D     +F FT +N+   +  I  YPVG E++AVIPLL  AQ Q GW+  +A+ 
Sbjct: 3   VRRLADDVYQPAEFSFTKENQIWVKNTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAAIE 62

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV 152
           ++A  L++  +RV EVATFYT F  KP+G        + H+  C TTPC LR S  +++V
Sbjct: 63  HIAQILSMAYIRVLEVATFYTQFQLKPVG-------TKAHIQVCGTTPCMLRGSGELIKV 115

Query: 153 IKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLKAG 181
            +KK +                            +M+ +   +DL  + +E+IID  +AG
Sbjct: 116 CQKKIHHEPFVTNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAG 175

Query: 182 KKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSL 215
           K       G    +G QS R  ++ E    +TSL
Sbjct: 176 K-------GSEIAVGPQSSR--KSSEPISGLTSL 200


>gi|254294099|ref|YP_003060122.1| NADH-quinone oxidoreductase subunit E [Hirschia baltica ATCC 49814]
 gi|254042630|gb|ACT59425.1| NADH-quinone oxidoreductase, E subunit [Hirschia baltica ATCC
           49814]
          Length = 366

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 88/173 (50%), Gaps = 39/173 (22%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMR 104
           F F  + +++    +S YP   +R+AVIP+L +AQ+ + GWL   AM  VAD L +  +R
Sbjct: 16  FAFKAETEEKIAFWLSKYPEERKRSAVIPMLWMAQKDNKGWLSEPAMREVADRLGMAYIR 75

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK-------- 156
           VYEVATFYTMF  +P+GE        +H+  C TTPC LR SD +++V K K        
Sbjct: 76  VYEVATFYTMFRMQPVGE--------FHIQVCGTTPCMLRGSDDLMKVCKSKIGEKGHVG 127

Query: 157 CNMMLE----------------------RQDLEPKDMEQIIDDLKAGKKPAPG 187
            N  L                        +DL+   M  ++DD  AGK PAPG
Sbjct: 128 ANGKLSWEEVECLGACVNAPMAQINDYYYEDLDEASMTSLLDDFVAGKNPAPG 180


>gi|319898886|ref|YP_004158979.1| NADH dehydrogenase I subunit E [Bartonella clarridgeiae 73]
 gi|319402850|emb|CBI76401.1| NADH dehydrogenase I, E subunit [Bartonella clarridgeiae 73]
          Length = 225

 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 108/217 (49%), Gaps = 47/217 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R   D +   +F FT +N+   +  I  YP+G E++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLADDIHQPAEFSFTKENQVWVQNTIKKYPIGREQSAVIPLLMRAQEQEGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + ++A+ L++  +RV E+ATFYT F  KP+G        + H+  C TTPC LR S  ++
Sbjct: 61  IEHIAELLSMAYIRVLEIATFYTQFQLKPVG-------TKAHIQVCGTTPCMLRGSGELI 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
           +V +KK +                            +M+ +   +DL  + +E+IID  +
Sbjct: 114 KVCQKKIHYKPFITNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFE 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLT 216
           AGK       G    +G Q+ R  ++ E    +TSL 
Sbjct: 174 AGK-------GSDIAVGPQNNR--KSSEPISGLTSLV 201


>gi|359790560|ref|ZP_09293451.1| NADH dehydrogenase subunit E [Mesorhizobium alhagi CCNWXJ12-2]
 gi|359253478|gb|EHK56604.1| NADH dehydrogenase subunit E [Mesorhizobium alhagi CCNWXJ12-2]
          Length = 428

 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 94/191 (49%), Gaps = 45/191 (23%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F F   N    +  +  YP G E++AVIPLL +AQ Q GW+   A+ +VAD L++P +R 
Sbjct: 16  FAFNKANSAAVKQWLKKYPKGREQSAVIPLLMIAQEQEGWVTKPAIEHVADMLDMPYIRA 75

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN------- 158
            EVATFYT F  KP+G        + H+  C TTPC LR S+A++EV + K +       
Sbjct: 76  LEVATFYTQFQLKPVG-------TRAHVQVCGTTPCMLRGSEALMEVCRSKIHHEQFHTN 128

Query: 159 ---------------------MMLER---QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                                +M+ +   +DL P+ + +IID  +AGK       G +  
Sbjct: 129 QAGTLSWEEVECLGACVNAPMVMIFKDTFEDLTPERLGEIIDAFEAGK-------GASVT 181

Query: 195 IGSQSGRFCQA 205
            G Q+GR   A
Sbjct: 182 PGPQNGRIYSA 192


>gi|409436902|ref|ZP_11264061.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium
           mesoamericanum STM3625]
 gi|408751376|emb|CCM75215.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium
           mesoamericanum STM3625]
          Length = 376

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 94/191 (49%), Gaps = 40/191 (20%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D      F F  +N   AE  I  YP G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDQFQPAAFAFNDENAVWAEKTIKKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  VAD L++  +RV EVATFYT F   P+G        + H+  C TTPC LR S++++
Sbjct: 61  IEKVADMLDMAYIRVLEVATFYTQFQLNPVG-------TRAHIQVCGTTPCMLRGSESLM 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
            V K K +                            +M+ +   +DL P+ + +IID  +
Sbjct: 114 AVCKSKIHDHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPERLGEIIDTFE 173

Query: 180 AGKKP--APGP 188
           AGK    APGP
Sbjct: 174 AGKGASIAPGP 184


>gi|365855586|ref|ZP_09395631.1| NADH-quinone oxidoreductase, E subunit [Acetobacteraceae bacterium
           AT-5844]
 gi|363719013|gb|EHM02332.1| NADH-quinone oxidoreductase, E subunit [Acetobacteraceae bacterium
           AT-5844]
          Length = 215

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 72/116 (62%), Gaps = 14/116 (12%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG------WLPISAMHYVADFL 98
           +F F  +++ + E I++ YP G + +AVIPLL +AQ+Q G      W+P  AM  VA+ L
Sbjct: 10  EFAFDTESEAQIEKIVARYPAGKQASAVIPLLYVAQKQMGRQTGSAWVPRVAMDKVAERL 69

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIK 154
           ++  +RVYEVATFY MF  KPIG        ++HL  C TTPCWLR SD +L   K
Sbjct: 70  SMAPIRVYEVATFYFMFNTKPIG--------RFHLQVCGTTPCWLRGSDDVLRACK 117


>gi|406706134|ref|YP_006756487.1| NADH dehydrogenase subunit E [alpha proteobacterium HIMB5]
 gi|406651910|gb|AFS47310.1| NADH dehydrogenase subunit E [alpha proteobacterium HIMB5]
          Length = 202

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 92/174 (52%), Gaps = 40/174 (22%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMR 104
           FEFT ++      IIS YP G +++AV+ LL +AQ+QH  W+P+SAM Y+   L++P ++
Sbjct: 14  FEFTKESLDEVNKIISKYPNGKQQSAVMALLYIAQKQHDNWIPLSAMKYIGKLLDMPYVK 73

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK-------- 156
           VYEVATFYTM+   P+G        ++ +  CTTTPC +R +  I+E  K+K        
Sbjct: 74  VYEVATFYTMYNLSPVG--------KHFVQVCTTTPCMIRGAYKIVEACKEKISKNENEF 125

Query: 157 -----CNMMLER------------------QDLEPKDMEQIIDDLKAGKKPAPG 187
                C+ M                     +DL+ +   +I+DD+ AGK P  G
Sbjct: 126 VKDKNCSWMEVECLGACINAPMMQINENYYEDLDKEKALKILDDVIAGKTPKHG 179


>gi|110633380|ref|YP_673588.1| NADH-quinone oxidoreductase subunit E [Chelativorans sp. BNC1]
 gi|110284364|gb|ABG62423.1| NADH dehydrogenase subunit E [Chelativorans sp. BNC1]
          Length = 345

 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 100/204 (49%), Gaps = 47/204 (23%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FT +N+  A   I  YP G +++AVIPLL  AQ Q GW+  +A+ +VA  L++P +RV
Sbjct: 16  FAFTRENEAWAHHTIRKYPPGRQQSAVIPLLMRAQEQEGWVTRAAIEHVAKMLDMPLIRV 75

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN------- 158
            EVATFYT F   P+G        + H+  C TTPC LR +  ++EV K + +       
Sbjct: 76  LEVATFYTQFQLAPVG-------TRAHVQVCGTTPCMLRGAGDLIEVCKSRIHPEPFHTN 128

Query: 159 ---------------------MMLER---QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                                +M+ +   +DL P+ +E+IID  +AGK       G T  
Sbjct: 129 EGGTLSWEEVECQGACVNAPMIMISKDSYEDLTPERLEEIIDAFEAGK-------GDTIK 181

Query: 195 IGSQSGRFCQAREAYHDMTSLTGE 218
            G+Q  R   A      +TSLT E
Sbjct: 182 PGTQIDRLTSA--PASGLTSLTDE 203


>gi|344923489|ref|ZP_08776950.1| NADH dehydrogenase I subunit E [Candidatus Odyssella
           thessalonicensis L13]
          Length = 217

 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 49/193 (25%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKM 103
           +F F+P+N ++ +  I+ YP G + +AVIPLLDL QRQ+G W+  + +  VA  L +P M
Sbjct: 14  QFIFSPENMEKVKKYIAKYPEGRQASAVIPLLDLGQRQNGGWVSQAVIEEVARLLAMPPM 73

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLR------------------- 144
           RV+EVA FYTMF  KP+G        ++H+  C TTPCWLR                   
Sbjct: 74  RVHEVAAFYTMFNLKPVG--------KHHIQLCGTTPCWLRGAADLKTACMDHLKIAEGG 125

Query: 145 -NSDAILEVIKKKC-----NMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYT 192
            ++D    +++ +C     N  + +      +DL P    +++D+L  GK+         
Sbjct: 126 VSADGKFSLMEVECLGACVNAPVVQINDDYYEDLSPATFVKLLDELAQGKE--------- 176

Query: 193 SGIGSQSGRFCQA 205
              GSQ GR C +
Sbjct: 177 VKTGSQIGRQCSS 189


>gi|423712690|ref|ZP_17686990.1| NADH-quinone oxidoreductase subunit E 1 [Bartonella washoensis
           Sb944nv]
 gi|395411483|gb|EJF78005.1| NADH-quinone oxidoreductase subunit E 1 [Bartonella washoensis
           Sb944nv]
          Length = 222

 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 106/216 (49%), Gaps = 47/216 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R   D     +F FT +N+  A+  I  YP G E++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLADDVYQPAEFSFTKENQIWAKNTIKKYPAGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + ++A  L++  +RV EVATFYT F  KP+G        + H+  C TTPC LR S  ++
Sbjct: 61  IEHIAQILSMAYIRVLEVATFYTQFQLKPVG-------TKAHVQVCGTTPCMLRGSGELI 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
           +V +KK +                            +M+ +   +DL  + +E+IID  +
Sbjct: 114 KVCQKKIHHEPFVTNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFE 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSL 215
           AGK       G    +G QS R  ++ E    +TSL
Sbjct: 174 AGK-------GSEIAVGPQSSR--KSSEPISGLTSL 200


>gi|424881061|ref|ZP_18304693.1| NADH-quinone oxidoreductase, E subunit [Rhizobium leguminosarum bv.
           trifolii WU95]
 gi|392517424|gb|EIW42156.1| NADH-quinone oxidoreductase, E subunit [Rhizobium leguminosarum bv.
           trifolii WU95]
          Length = 388

 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 102/219 (46%), Gaps = 47/219 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D      F F+ DN   A+  I  YP G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDDNAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  +AD L++  +RV EVATFYT F   P+G        + H+  C TTPC LR S+A++
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVG-------TRAHVQVCGTTPCMLRGSEALM 113

Query: 151 EVIKKKCNM-MLER------------------------------QDLEPKDMEQIIDDLK 179
            V K K +    ER                              +DL P+ +E+IID   
Sbjct: 114 SVCKSKIHAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPQRLEEIIDVFA 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGE 218
           AG       +G +   G+Q  R   A E     TSLT E
Sbjct: 174 AG-------NGASIKPGTQIDRVFSAPEG--GPTSLTTE 203


>gi|330813986|ref|YP_004358225.1| NADH-ubiquinone oxidoreductase subunit E [Candidatus Pelagibacter
           sp. IMCC9063]
 gi|327487081|gb|AEA81486.1| NADH-ubiquinone oxidoreductase chain E [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 199

 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 49/111 (44%), Positives = 74/111 (66%), Gaps = 9/111 (8%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMR 104
           F F+ +N K  + I+  YP   +++AV+PLL+LAQ+Q+ GW+ ++A+ Y+AD L +P ++
Sbjct: 14  FIFSSENLKTKDIILKKYPEVRKKSAVMPLLNLAQKQNDGWISLAAVQYIADLLEVPYIK 73

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
           VYEVATFYTM+   P+G        +Y +  CTTTPC +R S  I+E  KK
Sbjct: 74  VYEVATFYTMYNLAPVG--------KYFVQVCTTTPCAIRGSGKIVEACKK 116


>gi|116251470|ref|YP_767308.1| NADH dehydrogenase subunit E [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256118|emb|CAK07199.1| putative NADH-quinone oxidoreductase subunit E [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 388

 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 102/219 (46%), Gaps = 47/219 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D      F F+ DN   A+  I  YP G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDDNAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  +AD L++  +RV EVATFYT F   P+G        + H+  C TTPC LR S+A++
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVG-------TRAHVQVCGTTPCMLRGSEALM 113

Query: 151 EVIKKKCNM-MLER------------------------------QDLEPKDMEQIIDDLK 179
            V K K +    ER                              +DL P+ +E+IID   
Sbjct: 114 SVCKSKIHAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPERLEEIIDVFA 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGE 218
           AG       +G +   G+Q  R   A E     TSLT E
Sbjct: 174 AG-------NGASIKPGTQIDRVFSAPEG--GPTSLTTE 203


>gi|241204091|ref|YP_002975187.1| NADH dehydrogenase subunit E [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857981|gb|ACS55648.1| NADH-quinone oxidoreductase, E subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 388

 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 102/219 (46%), Gaps = 47/219 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D      F F+ +N   A+  I  YP G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  +AD L++  +RV EVATFYT F   P+G        + H+  C TTPC LR S+A++
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVG-------TRAHVQVCGTTPCMLRGSEALM 113

Query: 151 EVIKKKCNM-MLER------------------------------QDLEPKDMEQIIDDLK 179
            V K K +    ER                              +DL P  +E+IID   
Sbjct: 114 SVCKSKIHAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDVFA 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGE 218
           AG       +G +   G+Q  R   A E    +TSLT E
Sbjct: 174 AG-------NGASIKPGTQIDRVFSAPEG--GLTSLTTE 203


>gi|424894568|ref|ZP_18318142.1| NADH-quinone oxidoreductase, E subunit [Rhizobium leguminosarum bv.
           trifolii WSM2297]
 gi|393178795|gb|EJC78834.1| NADH-quinone oxidoreductase, E subunit [Rhizobium leguminosarum bv.
           trifolii WSM2297]
          Length = 388

 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 99/219 (45%), Gaps = 47/219 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D      F F+ DN   A+  I  YP G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDDNAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  +AD L +  +RV EVATFYT F   P+G        + H+  C TTPC LR S+A++
Sbjct: 61  IEKIADMLEMAYIRVLEVATFYTQFQLHPVG-------TRAHVQVCGTTPCMLRGSEALM 113

Query: 151 EVIKKKCNM-MLER------------------------------QDLEPKDMEQIIDDLK 179
            V K K +    ER                              +DL P+ +E+IID   
Sbjct: 114 SVCKSKIHAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPERLEEIIDAFA 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGE 218
           AG      P       G+Q  R   A E     TSLT E
Sbjct: 174 AGNGAGIKP-------GTQIDRIFSAPEG--GPTSLTTE 203


>gi|421587050|ref|ZP_16032505.1| NADH dehydrogenase subunit E [Rhizobium sp. Pop5]
 gi|403708571|gb|EJZ23226.1| NADH dehydrogenase subunit E [Rhizobium sp. Pop5]
          Length = 388

 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 101/219 (46%), Gaps = 47/219 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D      F F+ DN   A+  I  YP G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDDNAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  +AD L++  +RV EVATFYT F   P+G        + H+  C TTPC LR S+A++
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVG-------TRAHVQVCGTTPCMLRGSEALM 113

Query: 151 EVIKKKCNM-MLER------------------------------QDLEPKDMEQIIDDLK 179
            V K K +    ER                              +DL P+ +E+IID   
Sbjct: 114 SVCKSKIHAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPERLEEIIDAFA 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGE 218
           AG       +G     G+Q  R   A E     TSLT E
Sbjct: 174 AG-------NGADIKPGTQIDRVFSAPEG--GPTSLTTE 203


>gi|395791021|ref|ZP_10470480.1| NADH-quinone oxidoreductase, E subunit [Bartonella alsatica IBS
           382]
 gi|395409317|gb|EJF75916.1| NADH-quinone oxidoreductase, E subunit [Bartonella alsatica IBS
           382]
          Length = 225

 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 108/216 (50%), Gaps = 47/216 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R   D    V+F FT +N+   +  I  YP G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLADDIYQPVEFSFTKENQIWVQNTIDKYPAGRKQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + ++A  L++  +RV E+ATFYT F  +P+G        + H+  C TTPC LR S  ++
Sbjct: 61  IEHIAQILSMAYIRVLEIATFYTQFQLQPVG-------TKAHIQVCGTTPCMLRGSGELI 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
           +V +KK +                            +M+ +   +DL  + +E+IID  +
Sbjct: 114 KVCQKKIHREPFITNRDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFE 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSL 215
           +GK       G    +GSQSGR  ++ E    +TSL
Sbjct: 174 SGK-------GSEIVVGSQSGR--KSSEPVSGLTSL 200


>gi|402772311|ref|YP_006591848.1| NADH-quinone oxidoreductase subunit E (NADH dehydrogenase I subunit
           E) [Methylocystis sp. SC2]
 gi|401774331|emb|CCJ07197.1| NADH-quinone oxidoreductase subunit E (NADH dehydrogenase I subunit
           E) [Methylocystis sp. SC2]
          Length = 204

 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 69/202 (34%), Positives = 102/202 (50%), Gaps = 50/202 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMR 104
           FEFTP+NK   E  I+ YP G + + V+P L  AQ+QH  WL  +A+  VAD L + K+R
Sbjct: 14  FEFTPENKAWLEKQIAKYPDGRQASMVVPALWQAQKQHDNWLSQAAIEKVADALGMAKIR 73

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK-------- 156
           V E+ATFY+MF  +P+G        +Y +  C TTPC L  SD I++V+ ++        
Sbjct: 74  VLEIATFYSMFNLEPVG--------KYFIQLCGTTPCLLAGSDEIIDVLHRRVGPQRRVT 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                           CN  + +      +DL  ++ E+++D+L AG+            
Sbjct: 126 DDGLFSWLEVECLGACCNAPMVQINDDYYEDLTAENFEKLLDNLAAGRPVK--------- 176

Query: 195 IGSQSGRFCQAREAYHDMTSLT 216
           IGSQ GR   + E    +TSLT
Sbjct: 177 IGSQIGRV--SSEPAGKLTSLT 196


>gi|182679349|ref|YP_001833495.1| NADH-quinone oxidoreductase subunit E [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635232|gb|ACB96006.1| NADH-quinone oxidoreductase, E subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 222

 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 69/202 (34%), Positives = 104/202 (51%), Gaps = 50/202 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F FTP+++   + I++ YP   + +AVI LL  AQ+QH  WLP  A+  VAD L++P +R
Sbjct: 14  FAFTPESEAICKVILAKYPEDRQASAVISLLWQAQKQHDYWLPRPAIEKVADMLHMPYIR 73

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK-------- 156
           V EVATFYTMF  +P+G        +Y++ +C TTPC +  SD I  V++K+        
Sbjct: 74  VLEVATFYTMFNLEPVG--------RYYIQFCGTTPCLIAGSDDIKAVLEKRVGPEGQVT 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                           CN  + +      +DL P++   ++DDL AG+            
Sbjct: 126 SDGLFSWKEVECLGACCNAPMVQINDDYYEDLTPENFATLLDDLAAGRP---------VR 176

Query: 195 IGSQSGRFCQAREAYHDMTSLT 216
           IGSQ GR   + E +  +T+LT
Sbjct: 177 IGSQIGR--TSSEMHGGLTALT 196


>gi|414166632|ref|ZP_11422864.1| NADH-quinone oxidoreductase, E subunit [Afipia clevelandensis ATCC
           49720]
 gi|410892476|gb|EKS40268.1| NADH-quinone oxidoreductase, E subunit [Afipia clevelandensis ATCC
           49720]
          Length = 212

 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 98/205 (47%), Gaps = 49/205 (23%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPIS 89
           + V R    +     F FT +N + A+A I+ YP G + +AVIP+L   Q QH GW+   
Sbjct: 1   MAVRRLAPKEVQPTSFAFTAENLEWAKAQIAKYPPGRQASAVIPILWRVQEQHEGWVSEV 60

Query: 90  AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           A+  VAD L++P +RV E+ATFYTMF  +P+G+       + H+  C TTPC LR S  +
Sbjct: 61  AIRAVADLLDMPYIRVLEIATFYTMFQLEPVGK-------KAHVQVCGTTPCMLRGSKDL 113

Query: 150 LEVIKKKC-----------NMMLER--------------------QDLEPKDMEQIIDDL 178
           +EV K +            N   E                     +DL P+ + +++D  
Sbjct: 114 IEVCKSRIHHDPFHVSADGNFSWEEVECLGACVNAPMVMIWKDTYEDLTPESLNKVLDGF 173

Query: 179 KAGKKPAPGP----------SGYTS 193
            +G  P PGP          SG+TS
Sbjct: 174 ASGNPPKPGPQIDRQFAAPASGFTS 198


>gi|395786217|ref|ZP_10465944.1| NADH-quinone oxidoreductase, E subunit [Bartonella tamiae Th239]
 gi|423716890|ref|ZP_17691080.1| NADH-quinone oxidoreductase, E subunit [Bartonella tamiae Th307]
 gi|395422515|gb|EJF88711.1| NADH-quinone oxidoreductase, E subunit [Bartonella tamiae Th239]
 gi|395428964|gb|EJF95039.1| NADH-quinone oxidoreductase, E subunit [Bartonella tamiae Th307]
          Length = 259

 Score =  102 bits (255), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 51/111 (45%), Positives = 71/111 (63%), Gaps = 7/111 (6%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F F  +N+  A+ II+ YP G +++AVIPLL  AQ Q GW+  +A+ YVAD L++  +RV
Sbjct: 16  FSFNKENQVWAKKIIAQYPEGRQQSAVIPLLMRAQEQDGWVTRAAIEYVADLLSMAYIRV 75

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
            EVATFYT F  KP+G        + H+  C TTPC LR +  ++EV +KK
Sbjct: 76  MEVATFYTQFQLKPVG-------TKAHIQVCGTTPCMLRGAGDLIEVCQKK 119


>gi|424874782|ref|ZP_18298444.1| NADH-quinone oxidoreductase, E subunit [Rhizobium leguminosarum bv.
           viciae WSM1455]
 gi|393170483|gb|EJC70530.1| NADH-quinone oxidoreductase, E subunit [Rhizobium leguminosarum bv.
           viciae WSM1455]
          Length = 388

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 102/219 (46%), Gaps = 47/219 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D      F F+ +N   A+  I  YP G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  +AD L++  +RV EVATFYT F   P+G        + H+  C TTPC LR S+A++
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVG-------TRAHVQVCGTTPCMLRGSEALM 113

Query: 151 EVIKKKCNM-MLER------------------------------QDLEPKDMEQIIDDLK 179
            V K K +    ER                              +DL P  +E+IID   
Sbjct: 114 SVCKSKIHAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDLFA 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGE 218
           AG       +G +   G+Q  R   A E    +TSLT E
Sbjct: 174 AG-------NGASIKPGTQIDRVFSAPEG--GLTSLTTE 203


>gi|254455445|ref|ZP_05068874.1| NADH dehydrogenase i chain e [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082447|gb|EDZ59873.1| NADH dehydrogenase i chain e [Candidatus Pelagibacter sp. HTCC7211]
          Length = 202

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 74/112 (66%), Gaps = 9/112 (8%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           FEF   + +  + I+S YP G +++AV+ LL +AQRQ+  W+P++AM Y+A FL +P ++
Sbjct: 14  FEFNSSSLEAVKNIVSKYPKGKQQSAVMALLYIAQRQNNNWIPLAAMKYIAKFLEMPYIK 73

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VYEVATFYTM+   P+G         + +  CTTTPC +R ++ ++E  K+K
Sbjct: 74  VYEVATFYTMYNLSPVG--------NFFVQVCTTTPCMIRGANKLVEACKEK 117


>gi|430003208|emb|CCF18993.1| NADH-quinone oxidoreductase subunit E 1 [Rhizobium sp.]
          Length = 315

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 94/191 (49%), Gaps = 40/191 (20%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D+     F F  +N   AEA I  YP G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDNVQPAAFAFNEENAAWAEATIRKYPEGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + YVA  L +  +RV EVATFYT F  KP+G        + H+  C TTPC LR ++ ++
Sbjct: 61  IEYVAQKLGMAYIRVLEVATFYTQFQLKPVG-------TRAHVQVCGTTPCMLRGAEDLI 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
           +V K K +                            +M+ +   +DL P  +E IID   
Sbjct: 114 KVCKSKIHAEPFELNEDGTLSWEEVECQGACVNAPMVMIFKDAYEDLTPTQLEHIIDRFH 173

Query: 180 AGK--KPAPGP 188
           AGK  +  PGP
Sbjct: 174 AGKPHEITPGP 184


>gi|402486152|ref|ZP_10832984.1| NADH dehydrogenase subunit E [Rhizobium sp. CCGE 510]
 gi|401814808|gb|EJT07138.1| NADH dehydrogenase subunit E [Rhizobium sp. CCGE 510]
          Length = 389

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 103/221 (46%), Gaps = 48/221 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D      F F+ +N   A+  I  YP G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  +AD L++  +RV EVATFYT F   P+G        + H+  C TTPC LR S+A++
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVG-------TRAHVQVCGTTPCMLRGSEALM 113

Query: 151 EVIKKKCNM-MLER------------------------------QDLEPKDMEQIIDDLK 179
            V K K +    ER                              +DL P  +E+IID   
Sbjct: 114 SVCKSKIHAHSFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFA 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSL-TGEP 219
           AG       +G +   G+Q  R   A E    +TSL T EP
Sbjct: 174 AG-------NGASIKPGTQIDRVFSAPEG--GLTSLTTAEP 205


>gi|395766611|ref|ZP_10447150.1| NADH-quinone oxidoreductase subunit E 1 [Bartonella doshiae NCTC
           12862]
 gi|395415735|gb|EJF82162.1| NADH-quinone oxidoreductase subunit E 1 [Bartonella doshiae NCTC
           12862]
          Length = 224

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 105/216 (48%), Gaps = 47/216 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R   D     +F FT +N+   +  I  YPVG E++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLADDVYQPAEFSFTKENQIWVKNTIKKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + ++A  L++  +RV EVATFYT F  KP+G        + H+  C TTPC LR S  ++
Sbjct: 61  IEHIAQILSMAYIRVLEVATFYTQFQLKPVG-------TKAHIQVCGTTPCMLRGSGELI 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
           +V +KK +                            +M+ +   +DL  + +E+IID  +
Sbjct: 114 KVCQKKIHHEPFVTNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFE 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSL 215
            GK       G    +G QS R  ++ E    +TSL
Sbjct: 174 VGK-------GSEIAVGPQSSR--KSSEPIGGLTSL 200


>gi|338974266|ref|ZP_08629628.1| NADH-ubiquinone oxidoreductase chain E [Bradyrhizobiaceae bacterium
           SG-6C]
 gi|338232993|gb|EGP08121.1| NADH-ubiquinone oxidoreductase chain E [Bradyrhizobiaceae bacterium
           SG-6C]
          Length = 212

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 97/205 (47%), Gaps = 49/205 (23%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPIS 89
           + V R    +     F FT +N + A+A I+ YP G + +AVIP+L   Q QH GW+   
Sbjct: 1   MAVRRLAPKEVQPTSFAFTAENLEWAKAQIAKYPPGRQASAVIPILWRVQEQHEGWVSEV 60

Query: 90  AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           A+  VAD L++P +RV E+ATFYTMF  +P+G+       + H+  C TTPC LR S  +
Sbjct: 61  AIRAVADLLDMPYIRVLEIATFYTMFQLEPVGK-------KAHVQVCGTTPCMLRGSKDL 113

Query: 150 LEVIKKKC-----------NMMLER--------------------QDLEPKDMEQIIDDL 178
           +EV K +            N   E                     +DL P+ +  ++D  
Sbjct: 114 IEVCKSRIHHDPFHVSADGNFSWEEVECLGACVNAPMVMIWKDTYEDLTPESLNNVLDGF 173

Query: 179 KAGKKPAPGP----------SGYTS 193
            +G  P PGP          SG+TS
Sbjct: 174 ASGNPPKPGPQIDRQFAAPASGFTS 198


>gi|406989827|gb|EKE09545.1| hypothetical protein ACD_16C00139G0013 [uncultured bacterium]
          Length = 191

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 40/174 (22%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMHYVADFLNLPKMR 104
           F+F+ +N  R + I++ YP   + +A++PL +LAQRQ  GWLP+ A+  + + L +  +R
Sbjct: 4   FKFSKENVARVKEILTHYPSDRKASAILPLFELAQRQCGGWLPMEAIKTITEMLGVSVIR 63

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMM---- 160
            YEVATFYTMF  KP+G        +YHL  C T PC LR S+ +  V K+   +     
Sbjct: 64  GYEVATFYTMFNLKPVG--------KYHLQVCGTIPCMLRGSEQLKRVCKRHLGIENKET 115

Query: 161 ---------------------------LERQDLEPKDMEQIIDDLKAGKKPAPG 187
                                      +  +DL+ K   QI+ DL+AG++  PG
Sbjct: 116 TKDGLFTLSEVECLGACTNAPVVQINDVYYEDLDEKSFLQILKDLEAGREVKPG 169


>gi|398829513|ref|ZP_10587711.1| NADH-quinone oxidoreductase, E subunit [Phyllobacterium sp. YR531]
 gi|398216998|gb|EJN03538.1| NADH-quinone oxidoreductase, E subunit [Phyllobacterium sp. YR531]
          Length = 391

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 104/221 (47%), Gaps = 53/221 (23%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D+    +F F  +N   A+  I  YP G E++AVIPLL  AQ Q GW+  + 
Sbjct: 1   MSVRRLAEDNVQPAQFAFNRENSAWAKLAIKKYPKGREQSAVIPLLMRAQEQDGWVTKAC 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + +VA+ L++P +RV EVATFYT F  KP+G        + H+  C TTPC LR S+ + 
Sbjct: 61  IEHVAEMLDMPMIRVLEVATFYTQFQLKPVG-------TRAHIQVCGTTPCMLRGSEDLK 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
           +V + K +                            +M+ +   +DL P+ +E+IID  +
Sbjct: 114 KVCQHKIHHEQFHLNESGTLSWEEVECLGACVNAPMVMVFKDTYEDLTPERLEEIIDAFE 173

Query: 180 AG---------------KKPAPGPSGYTSGIGSQSGRFCQA 205
           AG                 P  GP+       S+SGR  ++
Sbjct: 174 AGNGASVPAGPQIDRHFSAPQGGPTSLNDNAASKSGRSAKS 214


>gi|209548867|ref|YP_002280784.1| NADH dehydrogenase subunit E [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534623|gb|ACI54558.1| NADH-quinone oxidoreductase, E subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 388

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 101/219 (46%), Gaps = 47/219 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D      F F+ +N   A+  I  YP G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  +AD L++  +RV EVATFYT F   P+G        + H+  C TTPC LR S+A++
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVG-------TRAHVQVCGTTPCMLRGSEALM 113

Query: 151 EVIKKKCNM-MLER------------------------------QDLEPKDMEQIIDDLK 179
            V K K +    ER                              +DL P  +E+IID   
Sbjct: 114 SVCKSKIHAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFA 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGE 218
           AG       +G +   G+Q  R   A E     TSLT E
Sbjct: 174 AG-------NGASIKPGTQIDRIFSAPEG--GPTSLTTE 203


>gi|110680465|ref|YP_683472.1| NADH dehydrogenase subunit E [Roseobacter denitrificans OCh 114]
 gi|109456581|gb|ABG32786.1| NADH-quinone oxidoreductase chain E [Roseobacter denitrificans OCh
           114]
          Length = 359

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 100/215 (46%), Gaps = 54/215 (25%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMH 92
           +H D  D      F FTP+N+  AE  I+ YP G + +A+IPLL  AQ Q GWL   A+ 
Sbjct: 5   LHPDQPD-----SFAFTPENQAWAEGQITKYPEGRQASAIIPLLWRAQEQEGWLSKPAIE 59

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV 152
           +V+D L L  +R  EVATFY MF  +P+G          H+  C TT C +  ++ ++ V
Sbjct: 60  HVSDMLGLSYIRGLEVATFYFMFQLQPVG-------AIAHIQVCGTTSCMICGAEDLVAV 112

Query: 153 IKKKC-----------NMMLER--------------------QDLEPKDMEQIIDDLKAG 181
            ++K            N   E                     +DL    M +IID+L AG
Sbjct: 113 CQEKIAREPHQLSEDGNFSWEEVECLGSCSNAPMAQIGKDYYEDLTAARMGEIIDELAAG 172

Query: 182 KKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLT 216
           K P PGP         Q+GR+  A E    +TSLT
Sbjct: 173 KVPVPGP---------QNGRY--AAEPLKGLTSLT 196


>gi|395779973|ref|ZP_10460441.1| NADH-quinone oxidoreductase subunit E 1 [Bartonella washoensis
           085-0475]
 gi|395419723|gb|EJF86019.1| NADH-quinone oxidoreductase subunit E 1 [Bartonella washoensis
           085-0475]
          Length = 222

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 105/216 (48%), Gaps = 47/216 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R   D     +F FT +N+   +  I  YP G E++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLADDVYQPAEFSFTKENQIWVKNTIKKYPAGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + ++A  L++  +RV EVATFYT F  KP+G        + H+  C TTPC LR S  ++
Sbjct: 61  IEHIAQILSMAYIRVLEVATFYTQFQLKPVG-------TKAHIQVCGTTPCMLRGSGELI 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
           +V +KK +                            +M+ +   +DL  + +E+IID  +
Sbjct: 114 KVCQKKIHHEPFVTNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFE 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSL 215
           AGK       G    +G QS R  ++ E    +TSL
Sbjct: 174 AGK-------GSEIAVGPQSSR--KSSEPISGLTSL 200


>gi|408379492|ref|ZP_11177086.1| NADH dehydrogenase subunit E [Agrobacterium albertimagni AOL15]
 gi|407746976|gb|EKF58498.1| NADH dehydrogenase subunit E [Agrobacterium albertimagni AOL15]
          Length = 374

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/111 (45%), Positives = 69/111 (62%), Gaps = 7/111 (6%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F F  +N   AEA I  YP G +++AVIPLL  AQ Q GW+  +A+ YVA+ L++P +RV
Sbjct: 16  FAFNAENATWAEATIRKYPAGRQQSAVIPLLMRAQEQEGWVTKAAIEYVAEKLDMPYIRV 75

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
            EVATFYT F  KP+G        + H+  C TTPC LR ++ ++ V K K
Sbjct: 76  LEVATFYTQFQLKPVG-------TRAHIQVCGTTPCMLRGAEDLIHVCKSK 119


>gi|339021754|ref|ZP_08645746.1| NADH-quinone oxidoreductase chain E [Acetobacter tropicalis NBRC
           101654]
 gi|338751250|dbj|GAA09050.1| NADH-quinone oxidoreductase chain E [Acetobacter tropicalis NBRC
           101654]
          Length = 213

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 95/195 (48%), Gaps = 46/195 (23%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG------WLPISAMHYVADFL 98
           KF F   ++     ++  YP   + +AV+P+L +AQRQ G      W+P++AM  +A  L
Sbjct: 13  KFSFDAASEAEIAKVLVKYPEARKASAVMPMLYIAQRQMGRETGSAWVPVAAMDEIAWRL 72

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN 158
           ++  +RVYEVA+FYTMF  +PIG        +YHL  CTTT CWLR SD ++   KK   
Sbjct: 73  DMAPIRVYEVASFYTMFNTRPIG--------RYHLQVCTTTSCWLRGSDDVVHACKKAAG 124

Query: 159 M---------------------------MLERQDLEPKDM-----EQIIDDLKAGKKPAP 186
           +                           +L+  D   +DM     E +I  L+AG++P  
Sbjct: 125 IASFGETSEDGLFTLTQVECLGACANAPILQVDDDFYEDMDGPRTEALIAALRAGERPPA 184

Query: 187 GPSGYTSGIGSQSGR 201
           GP+    G   + GR
Sbjct: 185 GPTVNRCGSAPEGGR 199


>gi|298291843|ref|YP_003693782.1| NADH-quinone oxidoreductase subunit E [Starkeya novella DSM 506]
 gi|296928354|gb|ADH89163.1| NADH-quinone oxidoreductase, E subunit [Starkeya novella DSM 506]
          Length = 290

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 88/175 (50%), Gaps = 39/175 (22%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMHYVADFLNLPKMR 104
           F FT +N   A+  I+ YP G + +AVIPLL  AQ Q  GW+   AM YV D L +  +R
Sbjct: 16  FAFTDENLDWAQKTIAKYPAGRQASAVIPLLMRAQEQAGGWVSEPAMRYVGDMLGMAPIR 75

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM----- 159
           VYE+ATFYT F   P+G+       + H+  C TTPC LR +  +++V K + +      
Sbjct: 76  VYEIATFYTQFQLNPVGK-------KAHIQVCGTTPCMLRGAGELMDVCKHRIHEEQFHL 128

Query: 160 ---------------------MLE-----RQDLEPKDMEQIIDDLKAGKKPAPGP 188
                                M++      +DL P D+E+I+D  + G+KP  GP
Sbjct: 129 SENGDFSWEEVECAGTCVNAPMIQVWKDVYEDLTPADLERILDAFERGEKPDAGP 183


>gi|424914553|ref|ZP_18337917.1| NADH-quinone oxidoreductase, E subunit [Rhizobium leguminosarum bv.
           trifolii WSM597]
 gi|392850729|gb|EJB03250.1| NADH-quinone oxidoreductase, E subunit [Rhizobium leguminosarum bv.
           trifolii WSM597]
          Length = 388

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 101/219 (46%), Gaps = 47/219 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D      F F+ +N   A+  I  YP G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  +AD L++  +RV EVATFYT F   P+G        + H+  C TTPC LR S+A++
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVG-------TRAHVQVCGTTPCMLRGSEALM 113

Query: 151 EVIKKKCNM-MLER------------------------------QDLEPKDMEQIIDDLK 179
            V K K +    ER                              +DL P  +E+IID   
Sbjct: 114 SVCKSKIHAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFA 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGE 218
           AG       +G +   G+Q  R   A E     TSLT E
Sbjct: 174 AG-------NGASIKPGTQIDRIFSAPEG--GPTSLTTE 203


>gi|49474181|ref|YP_032223.1| NADH dehydrogenase subunit E [Bartonella quintana str. Toulouse]
 gi|49239685|emb|CAF26060.1| NADH dehydrogenase I, E subunit [Bartonella quintana str. Toulouse]
          Length = 216

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 47/214 (21%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMH 92
           V R   D     +F FT +N+   +  I  YPVG E++AVIPLL  AQ Q GW+  +A+ 
Sbjct: 3   VRRLADDVYQPAEFSFTKENQIWVQNTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAAIE 62

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV 152
           ++A  L++  +RV EVATFYT F  +P+G        + H+  C TTPC LR S  +++V
Sbjct: 63  HIAQILSMAYIRVLEVATFYTQFQLQPVG-------TKAHIQICGTTPCMLRGSGELIKV 115

Query: 153 IKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLKAG 181
            +KK +                            +M+ +   +DL  + +E+IID  +AG
Sbjct: 116 CQKKIHNEPFVTNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAG 175

Query: 182 KKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSL 215
           K       G    +G Q+ R  ++ E    +TSL
Sbjct: 176 K-------GSEIAVGPQNSR--KSSEPISGLTSL 200


>gi|403530460|ref|YP_006664989.1| NADH dehydrogenase subunit E [Bartonella quintana RM-11]
 gi|403232532|gb|AFR26275.1| NADH dehydrogenase subunit E [Bartonella quintana RM-11]
          Length = 216

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 47/214 (21%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMH 92
           V R   D     +F FT +N+   +  I  YPVG E++AVIPLL  AQ Q GW+  +A+ 
Sbjct: 3   VRRLADDVYQPAEFSFTKENQIWVQNTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAAIE 62

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV 152
           ++A  L++  +RV EVATFYT F  +P+G        + H+  C TTPC LR S  +++V
Sbjct: 63  HIAQILSMAYIRVLEVATFYTQFQLQPVG-------TKAHIQICGTTPCMLRGSGELIKV 115

Query: 153 IKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLKAG 181
            +KK +                            +M+ +   +DL  + +E+IID  +AG
Sbjct: 116 CQKKIHNEPFVTNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAG 175

Query: 182 KKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSL 215
           K       G    +G Q+ R  ++ E    +TSL
Sbjct: 176 K-------GSEIAVGPQNSR--KSSEPISGLTSL 200


>gi|19070773|gb|AAL83989.1| NADH-ubiquinine oxido-reductase 24kD subunit [Oryza sativa]
          Length = 107

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/88 (57%), Positives = 66/88 (75%), Gaps = 2/88 (2%)

Query: 15  QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
           ++VR+L  T   N    ALFVHRDT ++N D  F+FTP+N KR EAI+  YP GH+ AAV
Sbjct: 20  RHVRNLHKTAMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79

Query: 73  IPLLDLAQRQHGWLPISAMHYVADFLNL 100
           +P+LDLAQRQ+GWLPISAM+ VA+ L +
Sbjct: 80  LPVLDLAQRQNGWLPISAMNKVAEVLQV 107


>gi|114327962|ref|YP_745119.1| NADH-quinone oxidoreductase chain E [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316136|gb|ABI62196.1| NADH-quinone oxidoreductase chain E [Granulibacter bethesdensis
           CGDNIH1]
          Length = 227

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 72/122 (59%), Gaps = 14/122 (11%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG------WLPISAMHYVADF 97
            +F F   +++R E I++ YP     +AV+PLLDLAQRQ G      W+P +AM  +A  
Sbjct: 18  AEFSFDVQSEQRIEIILAKYPPARRASAVMPLLDLAQRQMGRETGSAWIPRAAMDEIARR 77

Query: 98  LNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKC 157
           L +  +RVYEVATFY M+  +P+G        ++HL  CTTTPCWLR SD ++   +   
Sbjct: 78  LGMAPIRVYEVATFYFMYNTRPVG--------RHHLQLCTTTPCWLRGSDEVVAACRSAT 129

Query: 158 NM 159
            +
Sbjct: 130 GI 131


>gi|395765855|ref|ZP_10446446.1| NADH-quinone oxidoreductase subunit E 1 [Bartonella sp. DB5-6]
 gi|395410860|gb|EJF77407.1| NADH-quinone oxidoreductase subunit E 1 [Bartonella sp. DB5-6]
          Length = 216

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 105/214 (49%), Gaps = 47/214 (21%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMH 92
           V R   D     +F FT +N+   +  I  YPVG E++AVIPLL  AQ Q GW+  +A+ 
Sbjct: 3   VRRLADDIYQPAEFSFTKENQIWVKNTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAAIE 62

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV 152
           ++A  L++  +RV EVATFYT F  +P+G        + H+  C TTPC LR S  +++V
Sbjct: 63  HIAQILSMAYIRVLEVATFYTQFQLQPVG-------TRAHIQVCGTTPCMLRGSSELIKV 115

Query: 153 IKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLKAG 181
            +KK +                            +M+ +   +DL  + +E+IID  +AG
Sbjct: 116 CQKKIHHEPFVTNKDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAG 175

Query: 182 KKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSL 215
           K       G    +G QS R  ++ E    +TSL
Sbjct: 176 K-------GSEITVGPQSSR--KSSEPISGLTSL 200


>gi|222085580|ref|YP_002544110.1| NADH dehydrogenase subunit E [Agrobacterium radiobacter K84]
 gi|398376958|ref|ZP_10535138.1| NADH-quinone oxidoreductase, E subunit [Rhizobium sp. AP16]
 gi|221723028|gb|ACM26184.1| NADH-ubiquinone oxidoreductase chain E protein [Agrobacterium
           radiobacter K84]
 gi|397727285|gb|EJK87711.1| NADH-quinone oxidoreductase, E subunit [Rhizobium sp. AP16]
          Length = 381

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 99/219 (45%), Gaps = 47/219 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D      F F  +N   AE  I  YP G +++A+IPL+  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDQFQPAAFAFNKENAVWAEKTIKKYPEGRQQSAIIPLMMRAQEQEGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  +AD L++  +R  EVATFYT F   P+G        + H+  C TTPC LR ++ ++
Sbjct: 61  IETIADMLDMAHIRALEVATFYTQFQLNPVG-------TKAHIQVCGTTPCMLRGAEGLV 113

Query: 151 EVIKKKCNM-MLER------------------------------QDLEPKDMEQIIDDLK 179
           +V K K N    ER                              +DL P+ +E+IID   
Sbjct: 114 KVCKSKINGHAFERNADGTLSWEEVECQGACVNAPMVVIGKDTYEDLTPERLEEIIDAFS 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGE 218
           AG+       G     G Q  R   A E    +TSLT E
Sbjct: 174 AGE-------GSKVPTGPQIDRVFSAPEG--GLTSLTTE 203


>gi|126740380|ref|ZP_01756068.1| NADH dehydrogenase subunit E [Roseobacter sp. SK209-2-6]
 gi|126718516|gb|EBA15230.1| NADH dehydrogenase subunit E [Roseobacter sp. SK209-2-6]
          Length = 384

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 99/202 (49%), Gaps = 49/202 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FT DN+K AEA ++ YP G + +AVIPLL  AQ Q GW+   A+ YVAD L +  +RV
Sbjct: 13  FAFTADNQKWAEAQLTKYPEGRQASAVIPLLWRAQEQEGWVSKPALEYVADMLGMAYIRV 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVA+FY MF  +P G     S+   H+  C TT C +  ++ ++ + K+K         
Sbjct: 73  LEVASFYFMFQMQPTG-----SVA--HVQICGTTSCMICGAEDLVAICKEKIAEKPHTLS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  +    ++DDL AGKK  PGP      
Sbjct: 126 ADGKFSWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAHMLDDLAAGKKVVPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSLT 216
              Q+GR+  A E    +TSLT
Sbjct: 180 ---QNGRY--AAEPKSGLTSLT 196


>gi|239831690|ref|ZP_04680019.1| NADH-quinone oxidoreductase, E subunit [Ochrobactrum intermedium
           LMG 3301]
 gi|444310746|ref|ZP_21146365.1| NADH dehydrogenase subunit E [Ochrobactrum intermedium M86]
 gi|239823957|gb|EEQ95525.1| NADH-quinone oxidoreductase, E subunit [Ochrobactrum intermedium
           LMG 3301]
 gi|443485948|gb|ELT48731.1| NADH dehydrogenase subunit E [Ochrobactrum intermedium M86]
          Length = 377

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 105/219 (47%), Gaps = 47/219 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R   D      F F  +N+  A   I+ +P G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLADDAVQPAAFAFNAENQAWALKTIAKFPEGRQQSAVIPLLMRAQEQDGWVTKAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + +VA  L +P +RV EVATFYT F  KP+G        + H+  C TTPC LR S+A++
Sbjct: 61  IEHVAAMLEMPLIRVLEVATFYTQFQLKPVG-------TRAHIQVCGTTPCMLRGSEALM 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
           +V + K N                            +M+ +   +DL P+ + +IID  +
Sbjct: 114 DVCRHKINHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFE 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGE 218
           AGK       G T   G Q  R  +     + +TSLT E
Sbjct: 174 AGK-------GDTVKPGPQIDR--ETSNPLNGLTSLTEE 203


>gi|86357242|ref|YP_469134.1| NADH dehydrogenase subunit E [Rhizobium etli CFN 42]
 gi|86281344|gb|ABC90407.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli CFN
           42]
          Length = 385

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 103/219 (47%), Gaps = 47/219 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D      F F+ +N   A+  I  YP G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  +AD L++  +RV EVATFYT F   P+G        + H+  C TTPC LR S+A++
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVG-------TRAHVQVCGTTPCMLRGSEALM 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
            V K K +                            +M+ +   +DL P  +E+IID   
Sbjct: 114 SVCKSKIHSHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFA 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGE 218
           AG       +G +   G+Q  R   A E     TSLT E
Sbjct: 174 AG-------NGASIKPGTQIDRIFSAPEG--GPTSLTTE 203


>gi|330994058|ref|ZP_08317988.1| NADH dehydrogenase [ubiquinone] flavoprotein 2 [Gluconacetobacter
           sp. SXCC-1]
 gi|329759004|gb|EGG75518.1| NADH dehydrogenase [ubiquinone] flavoprotein 2 [Gluconacetobacter
           sp. SXCC-1]
          Length = 216

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 90/182 (49%), Gaps = 46/182 (25%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG------WLPISAMHYVADFLN 99
           FEF  D++++  A+++ YP   + + V+PLL + Q+Q G      W+P  AM  VA+ L 
Sbjct: 16  FEFDQDSERQIAAVLAKYPPERKASGVLPLLYVVQKQMGRQTGSAWIPRVAMDVVAERLE 75

Query: 100 LPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           +  +RVYEVATFY MF  KPIG        +YHL  CTTT CWLR SD +    K    +
Sbjct: 76  MAPIRVYEVATFYLMFNTKPIG--------RYHLQVCTTTSCWLRGSDDVTAACKAATGI 127

Query: 160 ---------------------------MLE-----RQDLEPKDMEQIIDDLKAGKKPAPG 187
                                      +L+      +DL+    E++I  LK G++P PG
Sbjct: 128 KAFGETSADGLFTLTEVECLGACANAPILQVDDDYYEDLDGPRTEELIAALKRGERPTPG 187

Query: 188 PS 189
           P+
Sbjct: 188 PT 189


>gi|255535799|ref|YP_003096170.1| NADH-ubiquinone oxidoreductase chain E [Flavobacteriaceae bacterium
           3519-10]
 gi|255341995|gb|ACU08108.1| NADH-ubiquinone oxidoreductase chain E [Flavobacteriaceae bacterium
           3519-10]
          Length = 169

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 71/113 (62%), Gaps = 9/113 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMRVY 106
           F P+  K+ + II  YP G +++A+IP+L LAQ++ G WL +  M YVAD L++  + VY
Sbjct: 7   FQPETLKQVQKIIGRYPEGKQKSALIPVLHLAQKEFGGWLDVPVMDYVADVLSIKPIEVY 66

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           EVATFYTMF  KP+G        +Y L  C T PC L  SD IL+ I++  N+
Sbjct: 67  EVATFYTMFNMKPVG--------KYVLEVCQTGPCMLSGSDGILQHIRETLNI 111


>gi|417110605|ref|ZP_11963775.1| NADH dehydrogenase subunit E [Rhizobium etli CNPAF512]
 gi|327188492|gb|EGE55706.1| NADH dehydrogenase subunit E [Rhizobium etli CNPAF512]
          Length = 385

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 101/219 (46%), Gaps = 47/219 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D      F F+ +N   A+  I  YP G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  +AD L++  +RV EVATFYT F   P+G        + H+  C TTPC LR S+A++
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVG-------TRAHVQVCGTTPCMLRGSEALM 113

Query: 151 EVIKKKCNMM-LER------------------------------QDLEPKDMEQIIDDLK 179
            V K K +    ER                              +DL P  +E+IID   
Sbjct: 114 SVCKSKIHAHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFA 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGE 218
           AG       +G +   G+Q  R   A E     TSLT E
Sbjct: 174 AG-------NGASIKPGTQIDRIFSAPEG--GPTSLTTE 203


>gi|395789881|ref|ZP_10469389.1| NADH-quinone oxidoreductase subunit E 1 [Bartonella taylorii 8TBB]
 gi|395428103|gb|EJF94185.1| NADH-quinone oxidoreductase subunit E 1 [Bartonella taylorii 8TBB]
          Length = 225

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 106/216 (49%), Gaps = 47/216 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R   D     +F FT +N+   +  I  YPVG E++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLADDIYQPAEFSFTKENQIWVKNTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + ++A  L++  +RV EVATFYT F  +P+G        + H+  C TTPC LR S  ++
Sbjct: 61  IEHIAQILSMAYIRVLEVATFYTQFQLQPVG-------TRAHIQVCGTTPCMLRGSGELI 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
           +V +KK +                            +M+ +   +DL  + +E+IID  +
Sbjct: 114 KVCQKKIHHEPFVTNRDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFE 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSL 215
           AGK       G    +G QS R  ++ E    +TSL
Sbjct: 174 AGK-------GSEIEVGPQSSR--KSSEPISGLTSL 200


>gi|418296081|ref|ZP_12907925.1| NADH dehydrogenase subunit E [Agrobacterium tumefaciens CCNWGS0286]
 gi|355539513|gb|EHH08751.1| NADH dehydrogenase subunit E [Agrobacterium tumefaciens CCNWGS0286]
          Length = 352

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 88/168 (52%), Gaps = 38/168 (22%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F F  +N   AE  I  YP G +++AVIPLL  AQ Q GW+  +A+  +AD L++  +RV
Sbjct: 3   FAFNAENTAWAEKTILKYPEGRQQSAVIPLLMRAQEQDGWVTRAAIEKIADMLDMAYIRV 62

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN------- 158
            EVATFYT F  KP+G        + H+  C TTPC LR S+A+++V +KK +       
Sbjct: 63  MEVATFYTQFQLKPVG-------TRAHVQVCGTTPCMLRGSEALMDVCRKKIHHDPLHTN 115

Query: 159 --------------------MML----ERQDLEPKDMEQIIDDLKAGK 182
                               M++      +DL P+ +E+IID  +AGK
Sbjct: 116 ESGTLSWEEVECQGACVNAPMVIIFKDAYEDLTPERLEEIIDTFEAGK 163


>gi|158423295|ref|YP_001524587.1| NADH dehydrogenase [Azorhizobium caulinodans ORS 571]
 gi|158330184|dbj|BAF87669.1| NADH dehydrogenase [Azorhizobium caulinodans ORS 571]
          Length = 224

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 101/204 (49%), Gaps = 50/204 (24%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPK 102
             F F+P+N+  A+  I+ YP G + +AVIPLL  AQ Q G WLP  A+  VAD L +  
Sbjct: 12  ASFAFSPENEAWADRQIAKYPEGRQASAVIPLLWKAQEQFGGWLPEPAIRVVADKLGMAY 71

Query: 103 MRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK------ 156
           +RV E+ATFYTMF  +P+G        ++ +  C TTPC LR +D + EV  +K      
Sbjct: 72  IRVLEIATFYTMFNLEPVG--------RHFVQLCGTTPCALRGADKLKEVCHRKIGPERH 123

Query: 157 ------------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYT 192
                              N  + +      +DL P+ +E+++DDL+AG+          
Sbjct: 124 VTEDGALSWLEVECLGACANAPMVQVNYDYFEDLTPESLEKLLDDLQAGRP--------- 174

Query: 193 SGIGSQSGRFCQAREAYHDMTSLT 216
              GSQ+GR   A E     TSLT
Sbjct: 175 VKTGSQTGRQASAPEG--GRTSLT 196


>gi|420239076|ref|ZP_14743427.1| NADH-quinone oxidoreductase, E subunit [Rhizobium sp. CF080]
 gi|398082874|gb|EJL73613.1| NADH-quinone oxidoreductase, E subunit [Rhizobium sp. CF080]
          Length = 403

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 96/191 (50%), Gaps = 42/191 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D      F F  +N   AEA I  YP G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDQVQPAIFAFNDENSVWAEATIRKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + +VA  L++P +RV EVATFYT F  KP+G        + H+  C TTPC LR ++ ++
Sbjct: 61  IEFVAGKLDMPYIRVLEVATFYTQFQLKPVG-------TRAHIQVCGTTPCMLRGAEDLM 113

Query: 151 EVIKKKCN---------------------------MML----ERQDLEPKDMEQIIDDLK 179
           +V + K +                           M++      +DL P+ +E+IID  +
Sbjct: 114 KVCQHKIHHDPFALNADGTLSWEEVECQGACVNAPMVIIFKDAYEDLTPERLEEIIDAFE 173

Query: 180 AGK----KPAP 186
           AGK    KP P
Sbjct: 174 AGKGHEVKPGP 184


>gi|302383050|ref|YP_003818873.1| NADH-quinone oxidoreductase subunit E [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193678|gb|ADL01250.1| NADH-quinone oxidoreductase, E subunit [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 222

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 90/190 (47%), Gaps = 45/190 (23%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  KD      F F+ +  K+ +  I+ YP    R+AVIP+L L Q+Q GW+   A
Sbjct: 1   MSVRRLAKDQP--ASFAFSKETMKKVDWWIAKYPADRARSAVIPMLWLVQKQEGWVSEPA 58

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  +AD L++  +RV EVATFYTMF+ +P+G   +  +       C TTPC LR S  ++
Sbjct: 59  IRAIADKLDMAYIRVLEVATFYTMFMLEPVGSAALIQV-------CGTTPCMLRGSGELM 111

Query: 151 EVIKKKCNMMLERQ---------------------------------DLEPKDMEQIIDD 177
           +V K +     E+Q                                 DL   D+ QIIDD
Sbjct: 112 KVCKSRIG---EKQTLSADGKFYWEEVECLGACVNAPMAMINDYYFEDLTAADLNQIIDD 168

Query: 178 LKAGKKPAPG 187
             AGK P PG
Sbjct: 169 FAAGKAPKPG 178


>gi|417860273|ref|ZP_12505329.1| NADH dehydrogenase subunit E [Agrobacterium tumefaciens F2]
 gi|338823337|gb|EGP57305.1| NADH dehydrogenase subunit E [Agrobacterium tumefaciens F2]
          Length = 352

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 88/168 (52%), Gaps = 38/168 (22%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F F  +N   AE  I  YP G +++AVIPLL  AQ Q GW+  +A+  +AD L++  +RV
Sbjct: 3   FAFNAENTAWAEKTILKYPEGRQQSAVIPLLMRAQEQDGWVTRAAIEKIADMLDMAYIRV 62

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN------- 158
            EVATFYT F  KP+G        + H+  C TTPC LR S+A+++V +KK +       
Sbjct: 63  MEVATFYTQFQLKPVG-------TRAHVQVCGTTPCMLRGSEALMDVCRKKIHHDPLHTN 115

Query: 159 --------------------MML----ERQDLEPKDMEQIIDDLKAGK 182
                               M++      +DL P+ +E+IID  +AGK
Sbjct: 116 ESGTLSWEEVECQGACVNAPMVIIFKDAYEDLTPERLEEIIDTFEAGK 163


>gi|90417839|ref|ZP_01225751.1| NADH dehydrogenase I, E subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337511|gb|EAS51162.1| NADH dehydrogenase I, E subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 488

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 100/211 (47%), Gaps = 55/211 (26%)

Query: 22  TTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQR 81
           + +RL  DA   H           F FT +N   A+A I  YP   +++AVIPLL  AQ 
Sbjct: 2   SVRRLADDAFQPH----------GFAFTDENAAWAQATIRKYPSERQQSAVIPLLMRAQD 51

Query: 82  QHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPC 141
           Q GW+  +A+ +VAD L +P +RV EVATFYT F  KP+G        + H+  C TTPC
Sbjct: 52  QEGWVTKAAIEHVADMLEMPLIRVLEVATFYTQFQLKPVG-------TRAHIQVCGTTPC 104

Query: 142 WLRNSDAILEVIKKKCN---------------------------MML----ERQDLEPKD 170
            LR ++ +  V + K +                           M++      +DL P+ 
Sbjct: 105 MLRGAEDLKAVCRSKIHAEPFHRNDAGTLSWEEVECLGACVNAPMVMIFHDAYEDLTPER 164

Query: 171 MEQIIDDLKAGKKPAPGPSGYTSGIGSQSGR 201
           +E+IID+ +AG+       G     G Q+GR
Sbjct: 165 LEEIIDEFEAGR-------GGDVKTGPQNGR 188


>gi|451942054|ref|YP_007462691.1| NADH dehydrogenase subunit E [Bartonella vinsonii subsp. berkhoffii
           str. Winnie]
 gi|451901441|gb|AGF75903.1| NADH dehydrogenase subunit E [Bartonella vinsonii subsp. berkhoffii
           str. Winnie]
          Length = 219

 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 102/202 (50%), Gaps = 47/202 (23%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR 104
           +F FT +N+   +  I  YPVG E++AVIPLL  AQ Q GW+  +A+ ++A  L++  +R
Sbjct: 15  EFSFTKENQIWVKNTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAAIEHIAQLLSMAYIR 74

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN------ 158
           V EVATFYT F  +P+G        + H+  C TTPC LR S  +++V +KK +      
Sbjct: 75  VLEVATFYTQFQLRPVG-------TKAHIQVCGTTPCMLRGSGELIKVCQKKIHHEPFVT 127

Query: 159 ----------------------MMLER---QDLEPKDMEQIIDDLKAGKKPAPGPSGYTS 193
                                 +M+ +   +DL  + +E+IID  +AGK       G   
Sbjct: 128 NKDGTLSWEEVECLGACVNAPMIMIFKDTYEDLTAERLEEIIDAFEAGK-------GSEI 180

Query: 194 GIGSQSGRFCQAREAYHDMTSL 215
            +G Q+ R  ++ E    +TSL
Sbjct: 181 AVGPQNSR--KSSEPVSGLTSL 200


>gi|339504015|ref|YP_004691435.1| NADH-quinone oxidoreductase subunit NuoE [Roseobacter litoralis Och
           149]
 gi|338758008|gb|AEI94472.1| NADH-quinone oxidoreductase subunit NuoE [Roseobacter litoralis Och
           149]
          Length = 359

 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 95/201 (47%), Gaps = 49/201 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTP+N+  AE  I+ YP G + +A+IPLL  AQ Q GWL   A+ +V+D L L  +R 
Sbjct: 13  FAFTPENQAWAEGQITKYPEGRQASAIIPLLWRAQEQEGWLSKPAIEHVSDMLGLSYIRG 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKC-------- 157
            EVATFY MF  +P+G          H+  C TT C +  ++ ++ V ++K         
Sbjct: 73  LEVATFYFMFQLQPVG-------AIAHIQVCGTTSCMICGAEDLISVCQEKIAREPHQLS 125

Query: 158 ---NMMLER--------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
              N   E                     +DL    M +IID+L AGK P PGP      
Sbjct: 126 EDGNFSWEEVECLGSCSNAPMAQIGKDYYEDLTAARMGEIIDELAAGKVPVPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSL 215
              Q+GR+  A E    +TSL
Sbjct: 180 ---QNGRY--AAEPLKGLTSL 195


>gi|395787837|ref|ZP_10467429.1| NADH-quinone oxidoreductase subunit E 1 [Bartonella birtlesii
           LL-WM9]
 gi|395410459|gb|EJF77014.1| NADH-quinone oxidoreductase subunit E 1 [Bartonella birtlesii
           LL-WM9]
          Length = 222

 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 105/216 (48%), Gaps = 47/216 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R   D      F FT +N+   +  I  YPVG E++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLADDIYQPADFSFTKENQVWVKNTIKKYPVGREQSAVIPLLMRAQEQDGWVSRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + ++A  L++  +RV EVATFYT F  KP+G        + H+  C TTPC LR S+ ++
Sbjct: 61  IEHIAQILSMAYIRVLEVATFYTQFQLKPVG-------TKAHIQVCGTTPCMLRGSEDLI 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
           +V +KK +                            +M+ +   +DL  + +E+IID   
Sbjct: 114 KVCQKKIHHEPFVTNSDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFA 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSL 215
           AGK       G    +G Q+ R  ++ E    +TSL
Sbjct: 174 AGK-------GSEITVGPQNNR--KSSEPISGLTSL 200


>gi|145356419|ref|XP_001422429.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582671|gb|ABP00746.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 217

 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 75/117 (64%), Gaps = 9/117 (7%)

Query: 34  HRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMH 92
           HRDT +DN  + + F    K R + I++ YP  ++R+A+IPLLDLAQRQ+ G L +S M+
Sbjct: 1   HRDTPEDNASLPWSFDEATKPRVDEILARYPTNYKRSAMIPLLDLAQRQNAGHLSLSLMN 60

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           +VA+   +  +RVYEVATFY+MF R+ +G        + H+  C TTPC LR +  I
Sbjct: 61  HVAEICEVAPIRVYEVATFYSMFNRQKMG--------KLHVMVCGTTPCMLRGARDI 109


>gi|424890845|ref|ZP_18314444.1| NADH-quinone oxidoreductase, E subunit [Rhizobium leguminosarum bv.
           trifolii WSM2012]
 gi|393173063|gb|EJC73108.1| NADH-quinone oxidoreductase, E subunit [Rhizobium leguminosarum bv.
           trifolii WSM2012]
          Length = 388

 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 98/219 (44%), Gaps = 47/219 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D      F F+ +N   A+  I  YP G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  +AD L +  +RV EVATFYT F   P+G        + H+  C TTPC LR S+A++
Sbjct: 61  IEKIADMLEMAYIRVLEVATFYTQFQLHPVG-------TRAHVQVCGTTPCMLRGSEALM 113

Query: 151 EVIKKKCNM-MLER------------------------------QDLEPKDMEQIIDDLK 179
            V K K +    ER                              +DL P  +E+IID   
Sbjct: 114 SVCKSKIHAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDAFA 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGE 218
           AG      P       G+Q  R   A E     TSLT E
Sbjct: 174 AGNGAGIKP-------GTQIDRIFSAPEG--GPTSLTTE 203


>gi|226466935|emb|CAX75948.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
           japonicum]
          Length = 157

 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 83/166 (50%), Gaps = 49/166 (29%)

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLR--NSDA 148
           M+ VA+ LN+P MRVYEVATFYTMF R+P+G        +YH+  CTTTPC L    S+A
Sbjct: 1   MNKVAEILNVPPMRVYEVATFYTMFNREPVG--------KYHIQICTTTPCMLGGVGSEA 52

Query: 149 ILEVIKKKCNM--------------------------MLE-----RQDLEPKDMEQIIDD 177
           IL  +KK   +                          ML+      +DL  +D  +II +
Sbjct: 53  ILNTLKKTLGIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYEDLTAEDTVRIIKE 112

Query: 178 LKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPW 223
           +KAGKKP PGP         Q GRF  A E    +TSL  EP GP 
Sbjct: 113 IKAGKKPKPGPQ------SGQGGRF--ASEPKGGLTSLNTEPKGPG 150


>gi|395792417|ref|ZP_10471851.1| NADH-quinone oxidoreductase subunit E 1 [Bartonella vinsonii subsp.
           arupensis Pm136co]
 gi|423713826|ref|ZP_17688086.1| NADH-quinone oxidoreductase subunit E 1 [Bartonella vinsonii subsp.
           arupensis OK-94-513]
 gi|395421632|gb|EJF87868.1| NADH-quinone oxidoreductase subunit E 1 [Bartonella vinsonii subsp.
           arupensis OK-94-513]
 gi|395432595|gb|EJF98574.1| NADH-quinone oxidoreductase subunit E 1 [Bartonella vinsonii subsp.
           arupensis Pm136co]
          Length = 219

 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 104/214 (48%), Gaps = 47/214 (21%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMH 92
           V R   D     +F FT +N+   +  I  YPVG E++AVIPLL  AQ Q GW+  +A+ 
Sbjct: 3   VRRLADDIYQPAEFSFTKENQIWVKNTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAAIE 62

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV 152
           ++A  L++  +RV EVATFYT F   P+G        + H+  C TTPC LR S  +++V
Sbjct: 63  HIAQLLSMAYIRVLEVATFYTQFQLHPVG-------TKAHIQVCGTTPCMLRGSAELIKV 115

Query: 153 IKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLKAG 181
            +KK +                            +M+ +   +DL  + +E+IID  +AG
Sbjct: 116 CQKKIHHEPFVTNQEGTLSWEEVECLGACVNAPMIMIFKDTYEDLTAERLEEIIDAFEAG 175

Query: 182 KKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSL 215
           K       G    +G Q+ R  ++ E    +TSL
Sbjct: 176 K-------GSEIAVGPQNSR--KSSEPISGLTSL 200


>gi|349699176|ref|ZP_08900805.1| NADH-quinone oxidoreductase chain E [Gluconacetobacter europaeus
           LMG 18494]
          Length = 216

 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 94/197 (47%), Gaps = 46/197 (23%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG------ 84
           + V  +  D      FEF  D++++   I++ YP   + + V+PLL + Q+Q G      
Sbjct: 1   MSVQSNAPDGVEPTHFEFDHDSEQQIAVILAKYPPERKASGVLPLLYVVQKQMGRQTGSA 60

Query: 85  WLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLR 144
           W+P  AM  VA+ L +  +RVYEVATFY MF  +PIG        +YHL  CTTT CWLR
Sbjct: 61  WIPRVAMDVVAERLEMAPIRVYEVATFYLMFNTRPIG--------RYHLQVCTTTSCWLR 112

Query: 145 NSDAILEVIKKKCNM---------------------------MLE-----RQDLEPKDME 172
            SD +    K    +                           +L+      +DL+    E
Sbjct: 113 GSDDVTAACKAATGIKAFGETSADGLFTLTEVECLGACANAPILQVDDDYYEDLDGPRTE 172

Query: 173 QIIDDLKAGKKPAPGPS 189
           ++I  L+ G++PAPGP+
Sbjct: 173 ELIAALRRGERPAPGPT 189


>gi|218516288|ref|ZP_03513128.1| NADH dehydrogenase subunit E [Rhizobium etli 8C-3]
          Length = 195

 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 94/207 (45%), Gaps = 45/207 (21%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMH 92
           V R  +D      F F+ +N   A+  I  YP G +++AVIPLL  AQ Q GW+  +A+ 
Sbjct: 3   VRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAAIE 62

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV 152
            +AD L++  +RV EVATFYT F   P+G        + H+  C TTPC LR S+A++ V
Sbjct: 63  KIADMLDMAYIRVLEVATFYTQFQLHPVG-------TRAHVQVCGTTPCMLRGSEALMSV 115

Query: 153 IKKKCNMM-LER------------------------------QDLEPKDMEQIIDDLKAG 181
            K K +    ER                              +DL P  +E+IID   AG
Sbjct: 116 CKSKIHAHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAG 175

Query: 182 KKPAPGPSGYTSGIGSQSGRFCQAREA 208
              +  P       G+Q  R   A E 
Sbjct: 176 NGASIKP-------GTQIDRIFSAPEG 195


>gi|349685711|ref|ZP_08896853.1| NADH-quinone oxidoreductase chain E [Gluconacetobacter oboediens
           174Bp2]
          Length = 219

 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 46/184 (25%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG------WLPISAMHYVADF 97
            +FEF  +++++   I++ YP   + + V+PLL + Q+Q G      W+P  AM  VA  
Sbjct: 17  TRFEFDSESEQQIATILAKYPPERKASGVLPLLYVVQKQMGRQTGSAWIPRVAMDVVAAR 76

Query: 98  LNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKC 157
           L +  +RVYEVATFY MF  KPIG        +YHL  CTTT CWLR SD +    K   
Sbjct: 77  LEMAPIRVYEVATFYLMFNTKPIG--------RYHLQVCTTTSCWLRGSDDVTAACKAAT 128

Query: 158 NM---------------------------MLE-----RQDLEPKDMEQIIDDLKAGKKPA 185
            +                           +L+      +DL+    E++I+ LK G++P 
Sbjct: 129 GIRAFGETSADGLFTLTEVECLGACANAPILQVDDDYYEDLDGPRTEELIEALKRGERPT 188

Query: 186 PGPS 189
           PGP+
Sbjct: 189 PGPT 192


>gi|254487093|ref|ZP_05100298.1| NADH dehydrogenase i, e subunit [Roseobacter sp. GAI101]
 gi|214043962|gb|EEB84600.1| NADH dehydrogenase i, e subunit [Roseobacter sp. GAI101]
          Length = 421

 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 96/204 (47%), Gaps = 49/204 (24%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
             F FTP N+  AEA I+ YP G + +A+IPLL  AQ Q GWL   A+ +V++ L L  +
Sbjct: 11  TSFAFTPANQAWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLSRPAIEHVSEMLGLAYI 70

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER 163
           R  EVATFY MF  +P+G     S+   H+  C TT C +  ++ ++ V K+K      +
Sbjct: 71  RGLEVATFYFMFQLQPVG-----SVA--HIQVCGTTSCMICGAEDLIAVCKEKIAAKAHQ 123

Query: 164 -------------------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYT 192
                                          +DL  +    +IDD+ AGK P PGP    
Sbjct: 124 ISDDGKFSWEEVECLGACSNAPMAQIGKDYYEDLTTEGFAAMIDDMAAGKVPVPGP---- 179

Query: 193 SGIGSQSGRFCQAREAYHDMTSLT 216
                Q+GR+  A E    +TSLT
Sbjct: 180 -----QNGRY--ASEPLSGLTSLT 196


>gi|313206212|ref|YP_004045389.1| NADH dehydrogenase subunit e [Riemerella anatipestifer ATCC 11845 =
           DSM 15868]
 gi|383485521|ref|YP_005394433.1| NADH dehydrogenase subunit e [Riemerella anatipestifer ATCC 11845 =
           DSM 15868]
 gi|386321798|ref|YP_006017960.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Riemerella
           anatipestifer RA-GD]
 gi|407451929|ref|YP_006723654.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Riemerella
           anatipestifer RA-CH-1]
 gi|416110689|ref|ZP_11592233.1| NADH-ubiquinone oxidoreductase chain E [Riemerella anatipestifer
           RA-YM]
 gi|442314594|ref|YP_007355897.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Riemerella
           anatipestifer RA-CH-2]
 gi|312445528|gb|ADQ81883.1| NADH dehydrogenase subunit E [Riemerella anatipestifer ATCC 11845 =
           DSM 15868]
 gi|315023103|gb|EFT36116.1| NADH-ubiquinone oxidoreductase chain E [Riemerella anatipestifer
           RA-YM]
 gi|325336341|gb|ADZ12615.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Riemerella
           anatipestifer RA-GD]
 gi|380460206|gb|AFD55890.1| NADH dehydrogenase subunit e [Riemerella anatipestifer ATCC 11845 =
           DSM 15868]
 gi|403312913|gb|AFR35754.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Riemerella
           anatipestifer RA-CH-1]
 gi|441483517|gb|AGC40203.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Riemerella
           anatipestifer RA-CH-2]
          Length = 170

 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 87/158 (55%), Gaps = 23/158 (14%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMRVY 106
           F P+  ++   II+ YP G +++A+IP+L +AQ++ G WL +  M YVA+ LN+  + VY
Sbjct: 8   FKPETLEKVHKIIARYPEGKQKSALIPVLHIAQKEFGGWLSVPVMDYVAEVLNILPIEVY 67

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLERQDL 166
           EVATFYTMF  KP+G        +Y L  C T PC L  SD IL+ I+K  N+       
Sbjct: 68  EVATFYTMFNMKPVG--------KYVLEVCRTGPCMLNGSDDILDHIRKTLNI------- 112

Query: 167 EPKDMEQIIDDLKAGKKPAP--GPSGYTSGIGSQSGRF 202
             KD E   D L    KPA   G  GY   +  Q G+F
Sbjct: 113 --KDGETTEDGLFT-LKPAECLGACGYAPMM--QLGKF 145


>gi|399090336|ref|ZP_10754037.1| NADH-quinone oxidoreductase, E subunit [Caulobacter sp. AP07]
 gi|398027965|gb|EJL21491.1| NADH-quinone oxidoreductase, E subunit [Caulobacter sp. AP07]
          Length = 228

 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 90/185 (48%), Gaps = 39/185 (21%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMH 92
           V R  KD      F F+ D++ +AE   + YP   +++AVIP+L LAQ+Q GW+   A+ 
Sbjct: 3   VRRLAKDQ--PASFAFSKDSQAKAEWWKAKYPAERKQSAVIPMLWLAQKQEGWVSEPAIQ 60

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV 152
            +A  L +P +RV EVATFY MF  +P+G+     +       C TTPC LR +  +  V
Sbjct: 61  EIAKQLQMPVIRVLEVATFYVMFQLQPVGKVAFVQL-------CGTTPCQLRGALDLKAV 113

Query: 153 IKKK------------------------CNMMLER------QDLEPKDMEQIIDDLKAGK 182
           +K K                        CN  +        +DL P+ + QI+DD  AGK
Sbjct: 114 LKAKIGEANDVSADGKFSWEEVECLGACCNAPMAAINDYYYEDLTPESLAQILDDFAAGK 173

Query: 183 KPAPG 187
            P PG
Sbjct: 174 SPKPG 178


>gi|254474816|ref|ZP_05088202.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e [Ruegeria sp.
           R11]
 gi|214029059|gb|EEB69894.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e [Ruegeria sp.
           R11]
          Length = 391

 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 99/202 (49%), Gaps = 49/202 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTP+N+  AEA I+ +P G + +A+IPLL  AQ Q GWL   A+ YVAD L +  +R 
Sbjct: 13  FAFTPENQTWAEAQITKFPEGRQASAIIPLLWRAQEQEGWLTKPAIEYVADMLGMAYIRA 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVA+FY MF  +P G     S+   H+  C TT C +  ++ ++ V K+K         
Sbjct: 73  LEVASFYFMFQLQPTG-----SVA--HVQICGTTSCMICGAEDLIAVCKEKIANKPFTLS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  +   +++DDL AG+ P PGP      
Sbjct: 126 ADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAKLLDDLAAGQVPLPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSLT 216
              Q+GR+  A E    +TSLT
Sbjct: 180 ---QNGRY--AAEPKSGLTSLT 196


>gi|296444798|ref|ZP_06886761.1| NADH-quinone oxidoreductase, E subunit [Methylosinus trichosporium
           OB3b]
 gi|296257746|gb|EFH04810.1| NADH-quinone oxidoreductase, E subunit [Methylosinus trichosporium
           OB3b]
          Length = 208

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 100/202 (49%), Gaps = 50/202 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           FEFTP+N    E  I+ YP G + + V+P L  AQ+Q+  WLP  A+  VA  L +P +R
Sbjct: 14  FEFTPENLAWLETQIAKYPDGRQASVVVPALWQAQKQNDYWLPQKAIEKVAQTLGMPYIR 73

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK-------- 156
           V E+ATFYTMF  +P+G        ++++  C TTPC L  SD ++ V++++        
Sbjct: 74  VLEIATFYTMFNLEPVG--------KFYVQLCGTTPCMLSGSDDLIAVLERRVGPQRHVS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                           CN  + +      +DL  +  E+++DDL AG+            
Sbjct: 126 ADGLFSWLEVECLGACCNAPMVQINDDYYEDLTAESFEKLLDDLAAGRP---------VK 176

Query: 195 IGSQSGRFCQAREAYHDMTSLT 216
            GSQ+GR   + E    +TSLT
Sbjct: 177 TGSQTGRI--SSEPAGGLTSLT 196


>gi|372281579|ref|ZP_09517615.1| NADH dehydrogenase subunit E [Oceanicola sp. S124]
          Length = 393

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 98/213 (46%), Gaps = 54/213 (25%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FT  N K AE  IS YP G + +AVIPLL  AQ Q GWL   A+ YVAD L++  +RV
Sbjct: 13  FAFTEANLKWAEGQISKYPEGRQASAVIPLLWRAQEQEGWLSKPAIEYVADMLDMASIRV 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER-- 163
            EVATFY MF  +P+G     S+   H+  C TT C +  ++ ++ V K K N       
Sbjct: 73  LEVATFYFMFQLQPVG-----SVA--HIQICGTTTCMICGAEDLISVCKDKINPKPHELS 125

Query: 164 -----------------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                                        +DL  + +  ++D L AG+ P PGP      
Sbjct: 126 ADGKFSWEEVECLGACANAPMAQIGKDYYEDLTAEKLGDLLDRLAAGEVPVPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSLTGEPHGPWDSKR 227
              Q+GRF  + E    + +LT      W+S R
Sbjct: 180 ---QNGRF--SSEPLAGLVALT-----EWESGR 202


>gi|296536152|ref|ZP_06898280.1| NADH-quinone oxidoreductase subunit E [Roseomonas cervicalis ATCC
           49957]
 gi|296263523|gb|EFH10020.1| NADH-quinone oxidoreductase subunit E [Roseomonas cervicalis ATCC
           49957]
          Length = 218

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 71/120 (59%), Gaps = 14/120 (11%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG------WLPISAMHYVADFLN 99
           F F  +++ + E I+  YP G + + VIPLL +AQ+Q G      W+P  AM  +A+ L 
Sbjct: 15  FAFDAESEAQIEKILKRYPEGKQASGVIPLLYVAQKQMGRATGSAWVPRVAMDTIAERLG 74

Query: 100 LPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           +  +RVYEVATFY MF  +PIG        ++HL  C TTPCWLR SD +L   K+  ++
Sbjct: 75  MAPIRVYEVATFYFMFNTRPIG--------RFHLQVCGTTPCWLRGSDEVLRACKEHGHL 126


>gi|354593932|ref|ZP_09011975.1| NADH-quinone oxidoreductase, E subunit [Commensalibacter intestini
           A911]
 gi|353673043|gb|EHD14739.1| NADH-quinone oxidoreductase, E subunit [Commensalibacter intestini
           A911]
          Length = 209

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 68/117 (58%), Gaps = 14/117 (11%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ------HGWLPISAMHYVADFL 98
           +F F  ++ ++ E I++ YP   + +AVIPLL + Q Q        W+P  AM  VA  L
Sbjct: 12  EFAFDQESNQQIEKILAKYPAARKASAVIPLLYVVQNQMKRLTKSAWVPKVAMSVVAKRL 71

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
            +  +RV+E+ATFYTMF  +PIGE        YHL  C TTPCWLR SD I+   KK
Sbjct: 72  EIAPVRVFEIATFYTMFNLEPIGE--------YHLQVCATTPCWLRGSDDIVAACKK 120


>gi|260434176|ref|ZP_05788147.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260418004|gb|EEX11263.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 382

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 98/201 (48%), Gaps = 49/201 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTP N   A+A I+ YP G + +AVIPLL  AQ Q GWL   A+ YVAD L +  +RV
Sbjct: 13  FAFTPANLDWAKAQITKYPEGRQASAVIPLLWRAQEQEGWLSRPAIEYVADMLGMAYIRV 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVA+FY MF  +P+G     S+   H+  C TT C +  ++ ++ V ++K         
Sbjct: 73  LEVASFYFMFQLQPVG-----SVA--HIQVCGTTSCMICGAEDLIAVCREKIAPKPHQLS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  +   +IIDDL +GK P PGP      
Sbjct: 126 ADGKLSWEEVECLGSCSNAPMAQIGKDYYEDLTAESFARIIDDLASGKVPVPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSL 215
              Q+GR+  A E    +TSL
Sbjct: 180 ---QNGRY--AAEPKGGLTSL 195


>gi|399036619|ref|ZP_10733625.1| NADH-quinone oxidoreductase, E subunit [Rhizobium sp. CF122]
 gi|398065788|gb|EJL57404.1| NADH-quinone oxidoreductase, E subunit [Rhizobium sp. CF122]
          Length = 378

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 103/220 (46%), Gaps = 46/220 (20%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D      F F  +N   AE  I  YP G +++AVIPLL  AQ Q GW+  +A
Sbjct: 1   MSVRRLAEDQFQPAAFAFNDENAAWAEKTIKKYPEGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  +AD L++  +RV EVATFYT F   P+G        + H+  C TTPC LR S++++
Sbjct: 61  IEQIADMLDMAYIRVLEVATFYTQFQLNPVG-------TRAHIQVCGTTPCMLRGSESLM 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
            V K K +                            +M+ +   +DL P+ +E+IID  +
Sbjct: 114 AVCKSKIHHHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPERLEEIIDAFE 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEP 219
            G       +G +  +G Q  R   + E     T L+ EP
Sbjct: 174 VG-------NGASIEVGPQIDRHFSSPEG-GPTTLLSEEP 205


>gi|170742515|ref|YP_001771170.1| NADH-quinone oxidoreductase subunit E [Methylobacterium sp. 4-46]
 gi|168196789|gb|ACA18736.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium sp. 4-46]
          Length = 394

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 98/209 (46%), Gaps = 60/209 (28%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F FTP+N + AEA I+ YP G + +AVIPLL  AQ Q+G WLP  A+  VAD L +P +R
Sbjct: 16  FAFTPENARWAEAQIAKYPEGRQASAVIPLLWRAQEQNGGWLPQKAIEAVADELGMPHIR 75

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPC----------------------- 141
           V EVATFYTMF  +P+G        +Y +  C T PC                       
Sbjct: 76  VLEVATFYTMFALEPVG--------RYWIQVCGTVPCDVCGAKELKHYLHDRLGPAGHVS 127

Query: 142 ------WLRNSDAILEVIKKKCNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPS 189
                 WL      +E +   CN  + +      +DL P+ + +++DDL AG+       
Sbjct: 128 PDGNFSWLE-----VECLGACCNAPMVQINQDYYEDLTPEILGRLMDDLAAGR------- 175

Query: 190 GYTSGIGSQSGRFCQAREAYHDMTSLTGE 218
                 GSQ+GR     E     T+LT E
Sbjct: 176 --PVKAGSQAGRTSS--EPKGAATTLTDE 200


>gi|407785306|ref|ZP_11132454.1| NADH dehydrogenase subunit E [Celeribacter baekdonensis B30]
 gi|407203338|gb|EKE73325.1| NADH dehydrogenase subunit E [Celeribacter baekdonensis B30]
          Length = 376

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 87/188 (46%), Gaps = 47/188 (25%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTP N   AE  I+ YP G + +AVIPLL  AQ Q GWL   A+  VAD L +P +RV
Sbjct: 13  FAFTPANLAWAEGQIAKYPEGRQASAVIPLLWRAQEQTGWLTKPALETVADMLGMPYIRV 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVATFY MF   P+G          H+  C TT C +  S  I+ V K+K         
Sbjct: 73  LEVATFYFMFQLAPVGSVA-------HIQVCGTTTCMICGSGDIISVCKEKISPTPHTVS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  ++  +++DD+ AG  P P        
Sbjct: 126 ADGKFSWEEVECLGACANAPMAQIGKDYYEDLTAENFSKLLDDMAAGNVPLP-------- 177

Query: 195 IGSQSGRF 202
            GSQ+GRF
Sbjct: 178 -GSQTGRF 184


>gi|346994691|ref|ZP_08862763.1| NADH dehydrogenase subunit E [Ruegeria sp. TW15]
          Length = 366

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/202 (34%), Positives = 97/202 (48%), Gaps = 49/202 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FT  N++ AEA I+ YP G + +AVIPLL  AQ Q GWL   A+  VAD L +  +RV
Sbjct: 13  FAFTAANQQWAEAQITKYPEGRQASAVIPLLWRAQEQEGWLSRPAIESVADMLGMAYIRV 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVA+FY MF  +P+G          H+  C TT C +  ++ ++ V K+K         
Sbjct: 73  LEVASFYFMFQLQPVGS-------VAHIQVCGTTSCMICGAEDLIAVCKEKIAAKPHELS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  +   +I+DDL +GK P PGP      
Sbjct: 126 DDGKLSWEEVECLGSCTNAPMAQIGKDYYEDLTTESFGKILDDLVSGKVPTPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSLT 216
              Q+GR+  A E    +TSLT
Sbjct: 180 ---QNGRY--AAEPLKGLTSLT 196


>gi|414173772|ref|ZP_11428399.1| NADH-quinone oxidoreductase, E subunit [Afipia broomeae ATCC 49717]
 gi|410890406|gb|EKS38205.1| NADH-quinone oxidoreductase, E subunit [Afipia broomeae ATCC 49717]
          Length = 212

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 91/190 (47%), Gaps = 39/190 (20%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPIS 89
           + V R    +     F F+ +N   A+A I  YP G +++AVIP+L   Q QH GW+   
Sbjct: 1   MAVRRLAPKEVQPASFAFSAENLAWAKAQIEKYPPGRQQSAVIPILWRVQEQHDGWVSEV 60

Query: 90  AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           A+  VAD L +P +RV E+ATFYTMF  +P+G+       + H+  C TTPC LR +  +
Sbjct: 61  AIRAVADLLEMPYIRVLEIATFYTMFQLEPVGK-------KAHVQVCGTTPCMLRGAKDL 113

Query: 150 LEVIKKKC-----------NMMLER--------------------QDLEPKDMEQIIDDL 178
           +EV K +            N   E                     +DL P+ + +++D  
Sbjct: 114 IEVCKHRIHHDPFHVSADGNFSWEEVECLGACVNAPMVMIWKDTYEDLTPESLNRVLDGF 173

Query: 179 KAGKKPAPGP 188
           + G  P PGP
Sbjct: 174 ETGNPPKPGP 183


>gi|254509903|ref|ZP_05121970.1| NADH-quinone oxidoreductase chain e [Rhodobacteraceae bacterium
           KLH11]
 gi|221533614|gb|EEE36602.1| NADH-quinone oxidoreductase chain e [Rhodobacteraceae bacterium
           KLH11]
          Length = 365

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 98/207 (47%), Gaps = 49/207 (23%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FT  N++ AEA I+ YP G + +AVIPLL  AQ Q GWL   A+  VAD L +  +RV
Sbjct: 13  FAFTAANQQWAEAQITKYPEGRQASAVIPLLWRAQEQEGWLTRPAIESVADMLGMAYIRV 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVA+FY MF  +P+G          H+  C TT C +  ++ ++ V K+K         
Sbjct: 73  LEVASFYFMFQLQPVGS-------VAHIQVCGTTSCMICGAEDLIAVCKEKIAAKPHVLS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  +   +++DDL AG+ P PGP      
Sbjct: 126 ADGKLSWEEVECLGSCTNAPMAQIGKDYYEDLTAESFGKLLDDLVAGRVPIPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSLTGEPHG 221
              Q+GR+  A E    +TSLT    G
Sbjct: 180 ---QNGRY--AAEPLKGLTSLTAHDSG 201


>gi|340779455|ref|ZP_08699398.1| NADH-quinone oxidoreductase chain E [Acetobacter aceti NBRC 14818]
          Length = 209

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 91/194 (46%), Gaps = 46/194 (23%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQ----RQHG--WLPISAMHYVADFLN 99
           FEF   ++     I++ YP   + +  +PLL +AQ    RQ G  W+P  AM  VA+ L 
Sbjct: 12  FEFDEISEGEIATILAKYPPERKASGALPLLYVAQNQMKRQTGSAWVPTVAMDAVAERLE 71

Query: 100 LPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           +  +R+YEVATFY MF  KPIG        +YHL  CTTT CWLR SD +L   KK   +
Sbjct: 72  VAPIRIYEVATFYFMFNTKPIG--------KYHLQVCTTTSCWLRGSDDVLSACKKAAGI 123

Query: 160 ---------------------------MLER-----QDLEPKDMEQIIDDLKAGKKPAPG 187
                                      +L+      +DL+    E +I+ LK G+ P PG
Sbjct: 124 HNVGETSEDGLFTLSEVECLGACSNAPILQVDNDFFEDLDGPRTEALIEALKRGEYPEPG 183

Query: 188 PSGYTSGIGSQSGR 201
           P+    G   + GR
Sbjct: 184 PTNGRHGAEPEGGR 197


>gi|149914582|ref|ZP_01903112.1| NADH-quinone oxidoreductase chain E [Roseobacter sp. AzwK-3b]
 gi|149811375|gb|EDM71210.1| NADH-quinone oxidoreductase chain E [Roseobacter sp. AzwK-3b]
          Length = 396

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 101/207 (48%), Gaps = 49/207 (23%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTP+N+  AEA I+ YP G + +A+IPLL  AQ Q GWL   A+ +VA  L++  +R 
Sbjct: 13  FAFTPENRAWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLSRPAIEHVAQMLDMDFIRG 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVATFY MF  +P+G     S+   H+  C TT C +  ++ ++ V ++K         
Sbjct: 73  LEVATFYFMFQLQPVG-----SVA--HVQVCGTTSCMICGAEDLIGVCREKISPNPHELS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  +   Q++DDL AGK PAPGP      
Sbjct: 126 ADGKLSWEEVECLGACANAPMAQIGKDYYEDLTAERFAQMLDDLVAGKVPAPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSLTGEPHG 221
              Q+GR+  A E    +TSL     G
Sbjct: 180 ---QNGRY--ASEPVSGLTSLLAHDKG 201


>gi|337268165|ref|YP_004612220.1| NADH-quinone oxidoreductase subunit E [Mesorhizobium opportunistum
           WSM2075]
 gi|336028475|gb|AEH88126.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 426

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 93/188 (49%), Gaps = 40/188 (21%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F F   N   A+  I  YP G E++A+IPLL +AQ Q GW+  +A+  ++D L +P++R 
Sbjct: 16  FAFNRANAAVAKQWIKKYPKGREQSAIIPLLMIAQEQEGWVTKAAIETISDMLGMPRIRG 75

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN------- 158
            EVATFYT +   P+G        + H+  C TTPC LR S+A+++V + K +       
Sbjct: 76  LEVATFYTQYQLNPVG-------TRAHIQVCGTTPCMLRGSEALMDVCRSKIHHDQFHTN 128

Query: 159 ---------------------MMLER---QDLEPKDMEQIIDDLKAGKKP--APGPSGYT 192
                                +M+ +   +DL P+ + +IID   AGK    APGP    
Sbjct: 129 DKGTLSWEEVECLGACVNAPMVMVFKDTFEDLTPERLAEIIDLYDAGKGASVAPGPQNGR 188

Query: 193 SGIGSQSG 200
           +G    +G
Sbjct: 189 TGSEPATG 196


>gi|260426293|ref|ZP_05780272.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit [Citreicella
           sp. SE45]
 gi|260420785|gb|EEX14036.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit [Citreicella
           sp. SE45]
          Length = 388

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 92/188 (48%), Gaps = 47/188 (25%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTPDN   AE  I+ YP G + +AVIPLL  AQ Q GWL   A+  VAD L +  +RV
Sbjct: 13  FAFTPDNLAWAEGQITKYPEGRQASAVIPLLWRAQEQEGWLTQKAIETVADMLGMAYIRV 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVATFY MF  +P+G     S+   H+  C TT C +  ++ ++ V K+K         
Sbjct: 73  LEVATFYFMFQLQPVG-----SVA--HVQVCGTTTCMICGAEDLIGVCKEKIAPKAHVVS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  + + +I+D+L AGK P PGP      
Sbjct: 126 PDGKFSWEEVECLGSCANAPMAQIGKDYYEDLTAERLGEILDELAAGKVPVPGP------ 179

Query: 195 IGSQSGRF 202
              Q+GR+
Sbjct: 180 ---QNGRY 184


>gi|418937589|ref|ZP_13491209.1| NADH-quinone oxidoreductase, E subunit, partial [Rhizobium sp.
           PDO1-076]
 gi|375055697|gb|EHS51937.1| NADH-quinone oxidoreductase, E subunit, partial [Rhizobium sp.
           PDO1-076]
          Length = 156

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 73/124 (58%), Gaps = 7/124 (5%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMH 92
           V R  ++      F F  +N   AE  I  YP G +++AVIPLL  AQ Q GW+  +A+ 
Sbjct: 3   VRRLAEEQFQPAGFSFNAENAAWAEVTIRKYPEGRQQSAVIPLLMRAQEQDGWVTKAAIE 62

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV 152
           +VA+ L++P +RV EVATFYT F  +PIG        + H+  C TTPC LR ++ +++V
Sbjct: 63  FVAEKLDMPYIRVLEVATFYTQFQLRPIG-------TRAHIQVCGTTPCMLRGAEDLIKV 115

Query: 153 IKKK 156
            K K
Sbjct: 116 CKSK 119


>gi|359407447|ref|ZP_09199924.1| NADH-quinone oxidoreductase, E subunit [SAR116 cluster alpha
           proteobacterium HIMB100]
 gi|356677486|gb|EHI49830.1| NADH-quinone oxidoreductase, E subunit [SAR116 cluster alpha
           proteobacterium HIMB100]
          Length = 208

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 72/115 (62%), Gaps = 9/115 (7%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMR 104
           F FT +++   +  ++ YP G + +AV  LL +AQRQH  W+P+ A+  +A+ L +P+MR
Sbjct: 15  FAFTAESEAEIQQQLAKYPDGRQASAVKSLLYIAQRQHDNWIPMKAIEAIAERLAMPEMR 74

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           V EVA+FYTMF  KP+G        +++L  C TTPC LR SD +   IK K N+
Sbjct: 75  VLEVASFYTMFNLKPVG--------KWYLQVCGTTPCMLRGSDDVSRCIKDKLNI 121


>gi|89067788|ref|ZP_01155242.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Oceanicola
           granulosus HTCC2516]
 gi|89046758|gb|EAR52813.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Oceanicola
           granulosus HTCC2516]
          Length = 425

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 98/201 (48%), Gaps = 49/201 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FT +N+  AEA I+ YP G + +A+IPLL  AQ Q GWL   A+  VA+ L +  +R 
Sbjct: 13  FAFTAENQAWAEAQITKYPAGRQASAIIPLLWRAQEQEGWLSRPAIEAVAEMLGMAYIRA 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVATFY MF  +P+G     S+   H+  C TT C +  ++ ++E+ K K         
Sbjct: 73  LEVATFYFMFQLQPVG-----SVA--HVQVCGTTSCMICGAEELMELCKTKIAARPHELS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL P  +E ++D++ AG+ P PGP      
Sbjct: 126 ADGRFSWEEVECLGACANAPMAQIGKDYYEDLTPGKLEGLLDEMAAGRVPTPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSL 215
              Q+GR+  A E    +TSL
Sbjct: 180 ---QNGRY--ASEPASGLTSL 195


>gi|56697618|ref|YP_167987.1| NADH dehydrogenase subunit E [Ruegeria pomeroyi DSS-3]
 gi|56679355|gb|AAV96021.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Ruegeria
           pomeroyi DSS-3]
          Length = 414

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 96/202 (47%), Gaps = 49/202 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTP N   AEA ++ +P G + +AVIPLL  AQ Q GWL   A+  VAD L +  +RV
Sbjct: 13  FAFTPANLAWAEAQVTKFPEGRQASAVIPLLWRAQEQEGWLTRPAIEAVADMLGMAYIRV 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVA+FY MF  +P+G          H+  C TT C +  ++ ++ V K+K         
Sbjct: 73  LEVASFYFMFQLQPVG-------TVAHIQICGTTSCMICGAEDLIAVCKEKIADKPHTLS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  K   +++D+L AGK P PGP      
Sbjct: 126 ADGKFSWEEVECLGSCTNAPMAQIGKDYYEDLTAKRFGELLDELAAGKVPVPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSLT 216
              Q+GR+  A E    +TSLT
Sbjct: 180 ---QNGRY--ASEPLKGLTSLT 196


>gi|456354961|dbj|BAM89406.1| NADH-quinone oxidoreductase chain E [Agromonas oligotrophica S58]
          Length = 203

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 39/188 (20%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAM 91
           V R    +     F FT +N   A+A I+ YP G + +AVI +L  AQ QH GW+  +A+
Sbjct: 3   VRRLAPKEIQPASFTFTDENLAFAKAQIAKYPEGRQASAVIAILWRAQEQHEGWVSEAAI 62

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
             VAD L +P +RV EVATFYTMF  +P+G+       + H+  C TTPC LR ++ ++E
Sbjct: 63  RVVADMLGMPYIRVLEVATFYTMFQLQPVGK-------KAHVQVCGTTPCRLRGAEELIE 115

Query: 152 VIKKKCNM--------------------------MLE-----RQDLEPKDMEQIIDDLKA 180
           V K + +                           M++      +DL P+   +++D    
Sbjct: 116 VCKHRIHHDPFHLSKDGDFSWEEVECLGACVNAPMVQVWKDTYEDLTPESFGKVLDGFAT 175

Query: 181 GKKPAPGP 188
           G  P PGP
Sbjct: 176 GNLPTPGP 183


>gi|407776918|ref|ZP_11124189.1| NADH dehydrogenase subunit E [Nitratireductor pacificus pht-3B]
 gi|407301083|gb|EKF20204.1| NADH dehydrogenase subunit E [Nitratireductor pacificus pht-3B]
          Length = 362

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 88/168 (52%), Gaps = 38/168 (22%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F F+      A+  I  YP G E++AVIPLL LAQ Q GW+  +A+ +VAD L++P +RV
Sbjct: 16  FAFSRAMGTEAKRWIKKYPKGREQSAVIPLLMLAQEQDGWVTRAAIEHVADMLDMPLIRV 75

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN------- 158
            EVATFYT F   P+G        + H+  C TTPC LR +  ++E+ K K +       
Sbjct: 76  LEVATFYTQFQLAPVG-------TRAHIQVCGTTPCMLRGAGELIELCKSKIHPEPFHTN 128

Query: 159 ---------------------MMLER---QDLEPKDMEQIIDDLKAGK 182
                                +M+ +   +DL P+ +++IID+ +AG+
Sbjct: 129 EGGTLSWEEVECQGACVNAPMVMIFKDTYEDLTPERLDEIIDEFEAGR 176


>gi|365876354|ref|ZP_09415876.1| NADH dehydrogenase subunit e [Elizabethkingia anophelis Ag1]
 gi|442589661|ref|ZP_21008468.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Elizabethkingia
           anophelis R26]
 gi|365755966|gb|EHM97883.1| NADH dehydrogenase subunit e [Elizabethkingia anophelis Ag1]
 gi|442560549|gb|ELR77777.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Elizabethkingia
           anophelis R26]
          Length = 169

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 87/158 (55%), Gaps = 23/158 (14%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMRVY 106
           F P+  ++   II+ YP G +++A+IP+L +AQ++ G WL +  M YVA+ LN+  + VY
Sbjct: 7   FKPEVIEQVNKIIARYPEGRQKSALIPVLHIAQKEFGGWLDVPVMDYVAELLNIRPIEVY 66

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLERQDL 166
           EVATFYTMF  KP+G        +Y L  C T PC L+ SD IL+ I+   N+       
Sbjct: 67  EVATFYTMFNMKPVG--------KYVLEVCRTGPCMLKGSDDILDHIRTTLNI------- 111

Query: 167 EPKDMEQIIDDLKAGKKPAP--GPSGYTSGIGSQSGRF 202
             KD E   D L    KPA   G  GY   +  Q G+F
Sbjct: 112 --KDGETTEDGLFT-LKPAECLGACGYAPMM--QLGKF 144


>gi|405381789|ref|ZP_11035612.1| NADH-quinone oxidoreductase, E subunit [Rhizobium sp. CF142]
 gi|397321676|gb|EJJ26091.1| NADH-quinone oxidoreductase, E subunit [Rhizobium sp. CF142]
          Length = 381

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 95/209 (45%), Gaps = 45/209 (21%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  +D      F F+ +N   AE  I  YP G +++AVIPLL  AQ Q GW+   A
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDENAVWAEKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRPA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  +AD L++  +RV EVATFYT F   P+G        + H+  C TTPC LR S+ ++
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVG-------TRAHVQVCGTTPCMLRGSEKLM 113

Query: 151 EVIKKKCNMM-LER------------------------------QDLEPKDMEQIIDDLK 179
            V + K +    ER                              +DL P+ +E+IID   
Sbjct: 114 GVCRSKIHQHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPERLEEIIDTFA 173

Query: 180 AGKKPAPGPSGYTSGIGSQSGRFCQAREA 208
           AG       +G +  +G Q  R   + E 
Sbjct: 174 AG-------NGASVKVGPQIDRHLSSPEG 195


>gi|406673366|ref|ZP_11080589.1| NADH-quinone oxidoreductase, E subunit [Bergeyella zoohelcum CCUG
           30536]
 gi|423316483|ref|ZP_17294388.1| NADH-quinone oxidoreductase, E subunit [Bergeyella zoohelcum ATCC
           43767]
 gi|405583533|gb|EKB57473.1| NADH-quinone oxidoreductase, E subunit [Bergeyella zoohelcum ATCC
           43767]
 gi|405586552|gb|EKB60312.1| NADH-quinone oxidoreductase, E subunit [Bergeyella zoohelcum CCUG
           30536]
          Length = 169

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 86/158 (54%), Gaps = 23/158 (14%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMRVY 106
           F P+  ++   II+ YP G +++A+IP+L LAQ++ G WL +  M YVA  L++  + VY
Sbjct: 7   FKPEVLEQVHKIIARYPEGRQKSALIPVLHLAQKEFGGWLDVPVMDYVAQLLSIKPIEVY 66

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLERQDL 166
           EVATFYTMF  KP+G        +Y L  C T PC LR S+ IL+ I+   N+       
Sbjct: 67  EVATFYTMFNMKPVG--------KYVLEVCRTGPCMLRGSEKILDHIRTTLNI------- 111

Query: 167 EPKDMEQIIDDLKAGKKPAP--GPSGYTSGIGSQSGRF 202
             KD E   D L    KPA   G  GY   +  Q G+F
Sbjct: 112 --KDGETTADGLFT-LKPAECLGACGYAPML--QLGKF 144


>gi|114797708|ref|YP_760452.1| NADH-quinone oxidoreductase subunit E [Hyphomonas neptunium ATCC
           15444]
 gi|114737882|gb|ABI76007.1| NADH-quinone oxidoreductase, E subunit [Hyphomonas neptunium ATCC
           15444]
          Length = 257

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 85/174 (48%), Gaps = 39/174 (22%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQR-QHGWLPISAMHYVADFLNLPKMR 104
           F F  + +++     + YP   +R+AVIP+L LAQ+  +GWL   AM  VAD L +P MR
Sbjct: 15  FSFKSETEEKITFWRAKYPADKQRSAVIPMLWLAQKDNNGWLSEPAMREVADRLEMPYMR 74

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMML--- 161
           VYEVATFYTMF  +P+G        ++H+  C TTPC LR ++ + EV  ++    +   
Sbjct: 75  VYEVATFYTMFRLQPVG--------KFHVQLCGTTPCQLRGAENLKEVCTREIGKQMYVT 126

Query: 162 ---------------------------ERQDLEPKDMEQIIDDLKAGKKPAPGP 188
                                        +DL P  + QII  LK G +  PGP
Sbjct: 127 DDKRLSWEEVECLGACVNAPMVQINDDYYEDLTPDSLAQIIGRLKNGVEVTPGP 180


>gi|406708283|ref|YP_006758635.1| NADH dehydrogenase subunit E [alpha proteobacterium HIMB59]
 gi|406654059|gb|AFS49458.1| NADH dehydrogenase subunit E [alpha proteobacterium HIMB59]
          Length = 195

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/124 (41%), Positives = 79/124 (63%), Gaps = 11/124 (8%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKM 103
           KFE++ +N K  + IIS YP   +++AV+PLL LAQ Q+  W+ I  +  +A+ L +PK+
Sbjct: 18  KFEWSKENLKEIKKIISKYPKERKQSAVMPLLYLAQEQNKNWVSIECIEAIAETLQMPKI 77

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK--KCNMML 161
           RV EVA+FY+M+  +P+G    K+++Q     C T+PCWLR SD I + I K  KC +  
Sbjct: 78  RVTEVASFYSMYNSQPVG----KNLIQV----CRTSPCWLRGSDKITDTICKETKCGINE 129

Query: 162 ERQD 165
             +D
Sbjct: 130 TSED 133


>gi|117926905|ref|YP_867522.1| NADH-quinone oxidoreductase subunit E [Magnetococcus marinus MC-1]
 gi|117610661|gb|ABK46116.1| NADH dehydrogenase subunit E [Magnetococcus marinus MC-1]
          Length = 170

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 70/110 (63%), Gaps = 9/110 (8%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMRVY 106
           F+ +  K+ E I + YP    ++A++P+LDLAQR+ G WL  ++M YVA+ + L  +RVY
Sbjct: 12  FSQEALKKVETIYNRYPADKRQSALLPVLDLAQREFGGWLSRASMDYVAELMGLAPIRVY 71

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           EVATFYTM+  KP+G        ++H+  CT   CWL  SD I E +K++
Sbjct: 72  EVATFYTMYNLKPVG--------KHHVQVCTNISCWLCGSDGIGEAVKQR 113


>gi|340027662|ref|ZP_08663725.1| NADH dehydrogenase subunit E [Paracoccus sp. TRP]
          Length = 239

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 91/189 (48%), Gaps = 47/189 (24%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR 104
            FEFTP N + A A ++ YP G +++A+IP+L  AQ Q GWL   A+ Y AD L +P +R
Sbjct: 12  SFEFTPANLEWARAQMTKYPEGRQQSAIIPVLWRAQEQEGWLSRPAIEYCADLLGMPYIR 71

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK-------- 156
             EVATFY MF  +P+G          H+  C TT C +  ++ ++ V K+K        
Sbjct: 72  ALEVATFYFMFQLQPVGS-------VAHIQVCGTTTCMICGAEDLIRVCKEKIAAEPHTL 124

Query: 157 -----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTS 193
                             N  + +      +DL  + + ++ID + AG+ P PGP     
Sbjct: 125 SADGRFSWEEVECLGACTNAPMAQIGKDFYEDLTAEKLAELIDRIAAGEVPVPGP----- 179

Query: 194 GIGSQSGRF 202
               Q+GRF
Sbjct: 180 ----QNGRF 184


>gi|148255910|ref|YP_001240495.1| NADH dehydrogenase subunit E [Bradyrhizobium sp. BTAi1]
 gi|146408083|gb|ABQ36589.1| NADH dehydrogenase subunit E [Bradyrhizobium sp. BTAi1]
          Length = 203

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 90/188 (47%), Gaps = 39/188 (20%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAM 91
           V R    D     F FT +N   A+A I+ YP G + +AVI +L  AQ Q+ GW+  +A+
Sbjct: 3   VRRLAPKDLQPASFAFTEENLAFAKAQIAKYPEGRQASAVIAILWRAQEQNEGWVSEAAI 62

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
             VAD L +P +RV EVATFYTMF  +P+G+       + H+  C TTPC LR ++ ++E
Sbjct: 63  RVVADMLGMPYIRVLEVATFYTMFQLQPVGK-------KAHVQVCGTTPCRLRGAEELIE 115

Query: 152 VIK-----------KKCNMMLER--------------------QDLEPKDMEQIIDDLKA 180
           V K           K  +   E                     +DL P+   +++D    
Sbjct: 116 VCKHRIHHDPFHLSKDGDFSWEEVECLGACVNAPMVQVWKDTYEDLTPESFGKVLDGFAT 175

Query: 181 GKKPAPGP 188
           G  P PGP
Sbjct: 176 GNLPTPGP 183


>gi|68171754|ref|ZP_00545102.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88658623|ref|YP_507425.1| NADH dehydrogenase subunit E [Ehrlichia chaffeensis str. Arkansas]
 gi|67998822|gb|EAM85526.1| NADH dehydrogenase (ubiquinone),  24 kDa subunit [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88600080|gb|ABD45549.1| NADH dehydrogenase I, E subunit [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 181

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 72/115 (62%), Gaps = 9/115 (7%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMHYVADFLNLPKMR 104
           F+F  DN K+A   IS YP   + +AV+ LL +AQ+Q  G++P+SAM+Y+ADFL +  + 
Sbjct: 16  FKFNKDNLKQANDTISKYPHDRKSSAVMDLLHIAQKQCGGFIPLSAMNYIADFLGMRLIH 75

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           VYEVA FY+M+   P G        +Y +  C TTPCWL  SD IL+  K+  N+
Sbjct: 76  VYEVAKFYSMYNLSPTG--------KYLIQVCRTTPCWLCGSDDILKSCKELLNI 122


>gi|429768404|ref|ZP_19300562.1| NADH-quinone oxidoreductase chain 2 [Brevundimonas diminuta 470-4]
 gi|429189185|gb|EKY30030.1| NADH-quinone oxidoreductase chain 2 [Brevundimonas diminuta 470-4]
          Length = 224

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 84/172 (48%), Gaps = 37/172 (21%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           FEF+ +  ++A+  I  YP    ++AVIP+L L Q+Q GW+   A+  + D L +  +RV
Sbjct: 14  FEFSKETMEKAQWWIKKYPESRRQSAVIPILWLVQKQEGWVSEPALRAIGDLLGMAYIRV 73

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVATFYTMF   P+G   +  +       C TT C LR S+ ++ V ++K         
Sbjct: 74  LEVATFYTMFQLTPVGTAALIQV-------CGTTQCMLRGSNELMRVCREKIGPKDELSA 126

Query: 157 --------------CNMM-------LERQDLEPKDMEQIIDDLKAGKKPAPG 187
                         C+         L  +DL P++M QIIDD  AGK P  G
Sbjct: 127 DGRFTWQEVECLGACSNAPMAQINDLYYEDLTPENMAQIIDDFAAGKTPKAG 178


>gi|13471403|ref|NP_102969.1| NADH dehydrogenase subunit E [Mesorhizobium loti MAFF303099]
 gi|14022145|dbj|BAB48755.1| NADH-ubiquinone dehydrogenase chain E 1 [Mesorhizobium loti
           MAFF303099]
          Length = 424

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 88/174 (50%), Gaps = 40/174 (22%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           I  YP G E++A+IPLL LAQ Q GW+  +A+  ++D L +P++R  EVATFYT +   P
Sbjct: 30  IKKYPKGREQSAIIPLLMLAQEQEGWVTKAAIETISDMLGMPRIRGLEVATFYTQYQLNP 89

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN--------------------- 158
           +G        + H+  C TTPC LR S+A+++V + K +                     
Sbjct: 90  VG-------TRAHIQVCGTTPCMLRGSEALMDVCRSKIHHDQFHTNDKGTLSWEEVECLG 142

Query: 159 -------MMLER---QDLEPKDMEQIIDDLKAGKKP--APGPSGYTSGIGSQSG 200
                  +M+ +   +DL P+ + +IID   AGK    APGP    +G    SG
Sbjct: 143 ACVNAPMVMIFKDTFEDLTPERLAEIIDLYDAGKGASVAPGPQNGRTGSEPASG 196


>gi|119384978|ref|YP_916034.1| NADH dehydrogenase subunit E [Paracoccus denitrificans PD1222]
 gi|266652|sp|P29914.1|NQO2_PARDE RecName: Full=NADH-quinone oxidoreductase chain 2; AltName:
           Full=NADH dehydrogenase I, chain 2; AltName: Full=NDH-1,
           chain 2
 gi|150603|gb|AAA25588.1| NADH dehydrogenase [Paracoccus denitrificans]
 gi|119374745|gb|ABL70338.1| NADH dehydrogenase subunit E [Paracoccus denitrificans PD1222]
          Length = 239

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 98/211 (46%), Gaps = 53/211 (25%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR 104
            FEFTP N + A A ++ YP G +++A+IP+L  AQ Q GWL   A+ Y AD L +P +R
Sbjct: 12  SFEFTPANLEWARAQMTKYPEGRQQSAIIPVLWRAQEQEGWLSRPAIEYCADLLGMPYIR 71

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK-------- 156
             EVATFY MF  +P+G          H+  C TT C +  ++ ++ V K+K        
Sbjct: 72  ALEVATFYFMFQLQPVGS-------VAHIQICGTTTCMICGAEDLIRVCKEKIAPEPHAL 124

Query: 157 -----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTS 193
                             N  + +      +DL  + +  +ID   AG+ P PGP     
Sbjct: 125 SADGRFSWEEVECLGACTNAPMAQIGKDFYEDLTVEKLAALIDRFAAGEVPVPGP----- 179

Query: 194 GIGSQSGRFCQAREAYHDMTSLT----GEPH 220
               Q+GRF  + EA    T+L     GE H
Sbjct: 180 ----QNGRF--SAEALGGPTALADLKGGEAH 204


>gi|83942670|ref|ZP_00955131.1| ATP synthase subunit E [Sulfitobacter sp. EE-36]
 gi|83953909|ref|ZP_00962630.1| ATP synthase subunit E [Sulfitobacter sp. NAS-14.1]
 gi|83841854|gb|EAP81023.1| ATP synthase subunit E [Sulfitobacter sp. NAS-14.1]
 gi|83846763|gb|EAP84639.1| ATP synthase subunit E [Sulfitobacter sp. EE-36]
          Length = 436

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 96/204 (47%), Gaps = 49/204 (24%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
             F FTP N+  AEA I+ YP G + +A+IPLL  AQ Q GWL   A+ +V++ L +  +
Sbjct: 11  TSFAFTPANQAWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLSRPAIEHVSEMLGMAYI 70

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK------- 156
           R  EVATFY MF  +P+GE         H   C TT C +  ++ ++EV K++       
Sbjct: 71  RGLEVATFYFMFQLQPVGE-------VAHFQICGTTSCMICGAEDLIEVCKERIAPKAHQ 123

Query: 157 ------------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYT 192
                              N  + +      +DL       +ID++ AG+ P PGP    
Sbjct: 124 ISADGKFSWEEVECLGACSNAPMAQIGKDYYEDLTVDGFRAMIDEMAAGQVPVPGP---- 179

Query: 193 SGIGSQSGRFCQAREAYHDMTSLT 216
                Q+GR+  A E    +TSLT
Sbjct: 180 -----QNGRY--ASEPLSGLTSLT 196


>gi|431805608|ref|YP_007232509.1| NADH-ubiquinone oxidoreductase subunit E [Liberibacter crescens
           BT-1]
 gi|430799583|gb|AGA64254.1| NADH-ubiquinone oxidoreductase chain E [Liberibacter crescens BT-1]
          Length = 294

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 87/176 (49%), Gaps = 40/176 (22%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F F+ DN   A+  I  YP    ++AVIPLL  AQ Q GW+  +A+  +AD L +  +RV
Sbjct: 16  FVFSEDNVLWAQKTIKKYPPSRHQSAVIPLLMRAQEQEGWVSRAAIEVIADMLGMAYIRV 75

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN------- 158
            E+ATFYT F  KP+G        + H+  C TTPC LR S+A++EV + K +       
Sbjct: 76  LEIATFYTQFQLKPVGS-------RAHIQVCGTTPCMLRGSEALIEVCRNKIHPDPLRVN 128

Query: 159 ---------------------MMLER---QDLEPKDMEQIIDDLKAGKKP--APGP 188
                                +M+ +   +DL P+ +E I+D   AGK     PGP
Sbjct: 129 SDGTVSWEEVECLGACVNAPMVMIGKDTYEDLTPERLEVIVDAFVAGKGVMIPPGP 184


>gi|304391404|ref|ZP_07373346.1| NADH dehydrogenase subunit e [Ahrensia sp. R2A130]
 gi|303295633|gb|EFL89991.1| NADH dehydrogenase subunit e [Ahrensia sp. R2A130]
          Length = 422

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 87/176 (49%), Gaps = 40/176 (22%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F+F+  N   A+  I  YP G + +AVIPLL  AQ Q GW+  +A+ ++A+ L +P +RV
Sbjct: 16  FKFSKANGAWAKKKIKDYPKGRQASAVIPLLMRAQEQEGWVTKAAIEHIAEMLGMPLIRV 75

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKC-------- 157
            EVATFYT F   P+G+       + H+  C TTPC LR +  I++V KK+         
Sbjct: 76  LEVATFYTQFQLAPVGK-------RAHVQVCGTTPCMLRGAGEIMDVCKKRIAPKPFELS 128

Query: 158 ---NMMLER--------------------QDLEPKDMEQIIDDLKAGKKPA--PGP 188
              N+  E                     +DL  + ME+IID   AG   +  PGP
Sbjct: 129 EDGNLSWEEVECQGACVNAPMVMVFKDSYEDLTAERMEEIIDAFDAGNGDSIPPGP 184


>gi|86137596|ref|ZP_01056173.1| ATP synthase subunit E [Roseobacter sp. MED193]
 gi|85825931|gb|EAQ46129.1| ATP synthase subunit E [Roseobacter sp. MED193]
          Length = 383

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 98/202 (48%), Gaps = 49/202 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FT +N+K AEA ++ +P G + +AVIPLL  AQ Q GW+   A+ Y+AD L +  +RV
Sbjct: 13  FAFTAENQKWAEAQLTKFPEGRQASAVIPLLWRAQEQEGWVSKPAIEYIADMLGMAYIRV 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EV +FY MF  +P G     S+   H+  C TT C +  ++ ++ V + K         
Sbjct: 73  LEVCSFYFMFQMQPTG-----SVA--HVQICGTTSCMICGAEDLIAVCQDKIAPKPFTLS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  +   Q++DDL AGKK  PGP      
Sbjct: 126 ADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFGQMLDDLAAGKKVVPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSLT 216
              Q+GR+  A E    +TSLT
Sbjct: 180 ---QNGRY--AAEPKSGLTSLT 196


>gi|84686433|ref|ZP_01014327.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84665616|gb|EAQ12092.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit
           [Rhodobacterales bacterium HTCC2654]
          Length = 423

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 96/203 (47%), Gaps = 49/203 (24%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
             F FTPDN+  AEA ++ YP G + +A+IPLL  AQ Q GWL   A+  VAD L +  +
Sbjct: 11  ASFAFTPDNQAWAEAQMTKYPEGRQASAIIPLLWRAQEQEGWLTKPAIEGVADMLGMEYI 70

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK------- 156
           R  EVATFY MF  +P+G     S+  + +  C TT C +  ++ ++ V K+K       
Sbjct: 71  RALEVATFYFMFQLQPVG-----SVAHFQI--CGTTSCMIMGAEDLIAVCKEKIAPNPHE 123

Query: 157 ------------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYT 192
                              N  + +      +DL  +    +ID + AG+ P PGP    
Sbjct: 124 LSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTTESFGDLIDRMGAGEVPLPGP---- 179

Query: 193 SGIGSQSGRFCQAREAYHDMTSL 215
                Q+GR+  A E    +TSL
Sbjct: 180 -----QNGRY--ASEPAGGLTSL 195


>gi|146341110|ref|YP_001206158.1| NADH dehydrogenase subunit E [Bradyrhizobium sp. ORS 278]
 gi|146193916|emb|CAL77933.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           (NDH-1, chain E) [Bradyrhizobium sp. ORS 278]
          Length = 203

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 90/188 (47%), Gaps = 39/188 (20%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAM 91
           V R    +     F FT DN   A+A I+ YP G + +AVI +L  AQ Q+ GW+  +A+
Sbjct: 3   VRRLAPKEVQPASFAFTDDNLAFAKAQIAKYPEGRQASAVIAILWRAQEQNEGWVSEAAI 62

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
             VAD L +P +RV E+ATFYTMF  +P+G+       + H+  C TTPC LR ++ ++E
Sbjct: 63  RVVADMLGMPYIRVLEIATFYTMFQLQPVGK-------KAHVQVCGTTPCRLRGAEELIE 115

Query: 152 VIK-----------KKCNMMLER--------------------QDLEPKDMEQIIDDLKA 180
           V K           K  +   E                     +DL P+   +++D    
Sbjct: 116 VCKHRIHHDPFHLSKDGDFSWEEVECLGACVNAPMVQVWKDTYEDLTPESFGKVLDGFAT 175

Query: 181 GKKPAPGP 188
           G  P PGP
Sbjct: 176 GNLPTPGP 183


>gi|295689624|ref|YP_003593317.1| NADH-quinone oxidoreductase subunit E [Caulobacter segnis ATCC
           21756]
 gi|295431527|gb|ADG10699.1| NADH-quinone oxidoreductase, E subunit [Caulobacter segnis ATCC
           21756]
          Length = 229

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 37/172 (21%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F F+ +++ +A+   + YP   +++AVIP+L LAQ+Q GW+   A+  +A  L +P +RV
Sbjct: 14  FTFSKESQAKADWWKAKYPAARKQSAVIPMLWLAQKQEGWISEPAIQEIAKQLEMPVIRV 73

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVATFY MF  +P+G+          +  C TTPC LR +  +  V+K K         
Sbjct: 74  LEVATFYVMFQLQPVGKVAF-------VQLCGTTPCQLRGALDLKAVLKDKIGEANHVSA 126

Query: 157 ---------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPG 187
                          CN  +        +DL P+ + QI+DD  AGK P PG
Sbjct: 127 DGKFSWEEVECLGACCNAPMAAINDYYYEDLTPESLAQILDDFAAGKSPKPG 178


>gi|154248548|ref|YP_001419506.1| NADH-quinone oxidoreductase subunit E [Xanthobacter autotrophicus
           Py2]
 gi|154162633|gb|ABS69849.1| NADH-quinone oxidoreductase, E subunit [Xanthobacter autotrophicus
           Py2]
          Length = 229

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 39/186 (20%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMHYVADFLNLPKMR 104
           F+ TP+ +  A+ +I+ YP G + +AV+PLL   Q+   GWLP  A+  VA+ L +  +R
Sbjct: 14  FDITPELEAIAQKLIAKYPEGRQASAVVPLLWETQKAAGGWLPEPAIRAVAERLGMANIR 73

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN------ 158
           V E+ATFYTMF  +P+G        +Y +  C TTPC LR ++AI  V +KK        
Sbjct: 74  VLEIATFYTMFNLEPVG--------KYFVQLCGTTPCMLRGAEAIKHVCEKKIGHERHVS 125

Query: 159 -------MMLE-----------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                  + +E                  +DL P++ E+++DDL AG+    GP     G
Sbjct: 126 ADGTFSWLEVECLGACTNAPMVQINDDYYEDLTPENFEKLLDDLAAGRPVKVGPQNSRRG 185

Query: 195 IGSQSG 200
              + G
Sbjct: 186 SEPEGG 191


>gi|357026741|ref|ZP_09088834.1| NADH dehydrogenase subunit E [Mesorhizobium amorphae CCNWGS0123]
 gi|355541383|gb|EHH10566.1| NADH dehydrogenase subunit E [Mesorhizobium amorphae CCNWGS0123]
          Length = 430

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 94/190 (49%), Gaps = 47/190 (24%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           I  YP G E++A+IPLL LAQ Q GW+  +A+  ++D L +P++R  EVATFYT +   P
Sbjct: 30  IKKYPKGREQSAIIPLLMLAQEQEGWVTKAAIETISDMLGMPRIRGLEVATFYTQYQLNP 89

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN--------------------- 158
           +G        + H+  C TTPC LR S+A+++V + K +                     
Sbjct: 90  VG-------TRAHIQVCGTTPCMLRGSEALMDVCRSKIHHDQFHTNDKGTLSWEEVECLG 142

Query: 159 -------MMLER---QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREA 208
                  +M+ +   +DL P+ + +IID   AGK       G +   G Q+GR     E 
Sbjct: 143 ACVNAPMVMIFKDTFEDLTPERLAEIIDLYGAGK-------GASVTPGPQNGRTTS--EP 193

Query: 209 YHDMTSLTGE 218
              +T+LT E
Sbjct: 194 ITGLTTLTSE 203


>gi|149202667|ref|ZP_01879639.1| NADH dehydrogenase subunit E [Roseovarius sp. TM1035]
 gi|149143949|gb|EDM31983.1| NADH dehydrogenase subunit E [Roseovarius sp. TM1035]
          Length = 396

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 95/201 (47%), Gaps = 49/201 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F F+P N+  AE  IS YP G + +A+IPLL  AQ Q GWL   A+ +VAD L +  +R 
Sbjct: 13  FAFSPANQAWAEGQISKYPEGRQASAIIPLLWRAQEQEGWLSRPAIEHVADMLAMDYIRA 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVATFY MF  +P+G     S+  + +  C TT C +  ++ ++ V K K         
Sbjct: 73  LEVATFYFMFQLQPVG-----SVAHFQI--CGTTTCMICGAEDLIAVCKDKIAPKAFDLS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL      +IID+L AGK P PGP      
Sbjct: 126 ADGKFSWEEVECLGACANAPMAQIGKDYYEDLTAARFAEIIDELAAGKVPVPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSL 215
              Q+GR+  A E    +TSL
Sbjct: 180 ---QNGRY--AAEPKSGLTSL 195


>gi|332662317|ref|YP_004445105.1| NADH-quinone oxidoreductase subunit E [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332331131|gb|AEE48232.1| NADH-quinone oxidoreductase, E subunit [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 169

 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 88/168 (52%), Gaps = 26/168 (15%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
           F+P+     + ++  YP G +++A++P+L LAQ+  GW+ +  M YVA+ L++  + VYE
Sbjct: 9   FSPERLAEVQTLLKRYPEGKQKSAILPILHLAQKDFGWISVEVMDYVAELLDIQHIEVYE 68

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLERQDLE 167
           VATFYTMF  KP+G    K++L+     C T PC L  SD I++ +++K ++        
Sbjct: 69  VATFYTMFHLKPVG----KNVLEV----CRTGPCMLVGSDNIVKYLEQKLSI-------- 112

Query: 168 PKDMEQIIDDLKAGKK-PAPGPSGYTSGIGSQSGRFCQAREAYHDMTS 214
            +D E   D L   K     G  GY        G   Q  E YH+  S
Sbjct: 113 -QDGETTPDGLFTIKTVECLGACGY--------GPMMQVGEKYHEFLS 151


>gi|85703205|ref|ZP_01034309.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Roseovarius
           sp. 217]
 gi|85672133|gb|EAQ26990.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Roseovarius
           sp. 217]
          Length = 398

 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 96/201 (47%), Gaps = 49/201 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F F+P N+  AE  IS YP G + +A+IPLL  AQ Q GWL   A+ +VAD L +  +R 
Sbjct: 13  FAFSPANQAWAEGQISKYPEGRQASAIIPLLWRAQEQEGWLSRPAIEHVADLLRMDYIRA 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVATFY MF  +P+G     S+  + +  C TT C +  ++ ++ V ++K         
Sbjct: 73  LEVATFYFMFQLQPVG-----SVAHFQI--CGTTTCMICGAEDLIAVCQEKIAPKAFELS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL      +IID+L AGK P PGP      
Sbjct: 126 TDGKFSWEEVECLGACANAPMAQIGKDYYEDLTTARFAEIIDELAAGKVPVPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSL 215
              Q+GR+  A E    +TSL
Sbjct: 180 ---QNGRY--AAEPKSGLTSL 195


>gi|407974323|ref|ZP_11155232.1| NADH dehydrogenase subunit E [Nitratireductor indicus C115]
 gi|407430012|gb|EKF42687.1| NADH dehydrogenase subunit E [Nitratireductor indicus C115]
          Length = 384

 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 42/176 (23%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F F+       +  I  YP G E++AVIPLL LAQ Q GW+  +A+ +VA+ LN+P +RV
Sbjct: 16  FAFSRSMSGEVKRWIKKYPKGREQSAVIPLLMLAQEQEGWVTRAAIEHVANMLNMPLIRV 75

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN------- 158
            EVATFYT F   P+G        + H+  C TTPC LR +  ++++ K K +       
Sbjct: 76  LEVATFYTQFQLAPVG-------TRAHVQVCGTTPCMLRGAGELIDLCKSKIHPEPFHLN 128

Query: 159 ---------------------MMLER---QDLEPKDMEQIIDDLKAGK----KPAP 186
                                +M+ +   +DL P+ + +IID  +AGK    KP P
Sbjct: 129 EGGTLSWEEVECQGACVNAPMVMIFKDSYEDLTPERLSEIIDAFEAGKGDTVKPGP 184


>gi|347760094|ref|YP_004867655.1| NADH-quinone oxidoreductase subunit E [Gluconacetobacter xylinus
           NBRC 3288]
 gi|347579064|dbj|BAK83285.1| NADH-quinone oxidoreductase chain E [Gluconacetobacter xylinus NBRC
           3288]
          Length = 216

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 91/197 (46%), Gaps = 46/197 (23%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG------ 84
           + V  +  D      F F  +++++   I++ YP   + + V+PLL + Q+Q G      
Sbjct: 1   MSVQPNAPDGVEPTHFAFDDESEQQIATILAKYPPERKASGVLPLLYVVQKQMGRQTGSA 60

Query: 85  WLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLR 144
           W+P  AM  VA  L +  +RVYEVATFY MF  KPIG        +YHL  CTTT CWLR
Sbjct: 61  WIPRVAMDVVAARLEMAPIRVYEVATFYLMFNTKPIG--------RYHLQVCTTTSCWLR 112

Query: 145 NSDAILEVIKKKCNM---------------------------MLE-----RQDLEPKDME 172
            SD +    K    +                           +L+      +DL+    E
Sbjct: 113 GSDDVTAACKAATGIRAFGETSADGLFTLTEVECLGACANAPILQVDDDYYEDLDGPRTE 172

Query: 173 QIIDDLKAGKKPAPGPS 189
            +I  LK G++PAPGP+
Sbjct: 173 ALIAALKRGERPAPGPT 189


>gi|319782985|ref|YP_004142461.1| NADH-quinone oxidoreductase subunit E [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168873|gb|ADV12411.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 426

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 40/174 (22%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           I  YP G E++A+IPLL +AQ Q GW+  +A+  ++D L +P++R  EVATFYT +   P
Sbjct: 30  IKKYPKGREQSAIIPLLMIAQEQEGWVTKAAIETISDMLGMPRIRGLEVATFYTQYQLNP 89

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN--------------------- 158
           +G        + H+  C TTPC LR S+A+++V + K +                     
Sbjct: 90  VG-------TRAHIQVCGTTPCMLRGSEALMDVCRSKVHHDQFHTNDKGTLSWEEVECLG 142

Query: 159 -------MMLER---QDLEPKDMEQIIDDLKAGKKPA--PGPSGYTSGIGSQSG 200
                  +M+ +   +DL P+ + +IID   AGK  A  PGP    +G    SG
Sbjct: 143 ACVNAPMVMIFKDTFEDLTPERLAEIIDLYDAGKGAAVEPGPQNGRTGSEPASG 196


>gi|367473651|ref|ZP_09473199.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           (NDH-1, chain E) [Bradyrhizobium sp. ORS 285]
 gi|365274047|emb|CCD85667.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           (NDH-1, chain E) [Bradyrhizobium sp. ORS 285]
          Length = 203

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 90/188 (47%), Gaps = 39/188 (20%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAM 91
           V R    +     F FT +N   A+A I+ YP G + +AVI +L  AQ Q+ GW+  +A+
Sbjct: 3   VRRLAPKEVQPASFAFTEENLAFAKAQIAKYPEGRQASAVIAILWRAQEQNAGWVSEAAI 62

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
             VAD L +P +RV EVATFYTMF  +P+G+       + H+  C TTPC LR ++ ++E
Sbjct: 63  RVVADMLGMPYIRVLEVATFYTMFQLQPVGK-------KAHVQVCGTTPCRLRGAEELIE 115

Query: 152 VIK-----------KKCNMMLER--------------------QDLEPKDMEQIIDDLKA 180
           V K           K  +   E                     +DL P+   +++D    
Sbjct: 116 VCKHRIHHDPFHLSKDGDFSWEEVECLGACVNAPMVQVWKDTYEDLTPESFGKVLDGFAT 175

Query: 181 GKKPAPGP 188
           G  P PGP
Sbjct: 176 GNLPTPGP 183


>gi|259419184|ref|ZP_05743101.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit
           [Silicibacter sp. TrichCH4B]
 gi|259345406|gb|EEW57260.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit
           [Silicibacter sp. TrichCH4B]
          Length = 410

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 95/201 (47%), Gaps = 49/201 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTP N+  AEA ++ YP G + +AVIP+L  AQ Q GW+   A+ YVAD L +  +RV
Sbjct: 13  FAFTPANQAWAEAQMTKYPEGRQASAVIPILWRAQEQEGWVTKPALEYVADMLGMAYIRV 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVA+FY MF  +P G     S+   H+  C TT C +  ++ ++ V K K         
Sbjct: 73  LEVASFYFMFQLQPTG-----SVA--HIQVCGTTSCMICGAEDLIAVCKDKIAAKPHTLS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL      ++IDDL AGK   PGP      
Sbjct: 126 ADGKFSWEEVECLGSCTNAPMAQIGKDYYEDLTAASFTKLIDDLAAGKAVVPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSL 215
              Q+GR+  A E    +TSL
Sbjct: 180 ---QNGRY--AAEPKSGLTSL 195


>gi|365890992|ref|ZP_09429468.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           (NDH-1, chain E) [Bradyrhizobium sp. STM 3809]
 gi|365333108|emb|CCE01999.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           (NDH-1, chain E) [Bradyrhizobium sp. STM 3809]
          Length = 216

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 93/188 (49%), Gaps = 39/188 (20%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAM 91
           V   ++ D     F FT +N   A+A I+ YP G + +AVI +L  AQ Q+ GW+  +A+
Sbjct: 16  VRPPSRQDLQPASFAFTDENLAFAKAQIAKYPEGRQASAVIAILWRAQEQNAGWVSEAAI 75

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
             VAD L +P +RV E+ATFYTMF  +P+G+       + H+  C TTPC LR ++ ++E
Sbjct: 76  RVVADMLGMPYIRVLEIATFYTMFQLQPVGK-------KAHVQVCGTTPCRLRGAEELIE 128

Query: 152 VIKKKCNM--------------------------MLE-----RQDLEPKDMEQIIDDLKA 180
           V K + +                           M++      +DL P+   +++D    
Sbjct: 129 VCKHRIHHDPFHLSKDGDFSWEEVECLGACVNAPMVQIWKDTYEDLTPESFGKVLDGFAT 188

Query: 181 GKKPAPGP 188
           G  P PGP
Sbjct: 189 GNLPTPGP 196


>gi|99080587|ref|YP_612741.1| NADH dehydrogenase subunit E [Ruegeria sp. TM1040]
 gi|99036867|gb|ABF63479.1| NADH-quinone oxidoreductase E subunit [Ruegeria sp. TM1040]
          Length = 398

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 96/202 (47%), Gaps = 49/202 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTP N+  AEA ++ YP G + +AVIP+L  AQ Q GW+   A+ YVAD L +  +RV
Sbjct: 13  FAFTPANQAWAEAQMTKYPEGRQASAVIPILWRAQEQEGWISKPAIEYVADMLGMAYIRV 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVA+FY MF  +P G     S+   H+  C TT C +  ++ ++ + K K         
Sbjct: 73  LEVASFYFMFQLQPTG-----SVA--HIQICGTTSCMICGAEDLVAICKDKISAKPHTLS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL      +++DDL AGK   PGP      
Sbjct: 126 EDGKFSWEEVECLGSCANAPMAQIGKDYYEDLTAASFTKLLDDLAAGKPVVPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSLT 216
              Q+GR+  A E    +TSLT
Sbjct: 180 ---QNGRY--AAEPKAGLTSLT 196


>gi|126736065|ref|ZP_01751809.1| ATP synthase subunit E [Roseobacter sp. CCS2]
 gi|126714622|gb|EBA11489.1| ATP synthase subunit E [Roseobacter sp. CCS2]
          Length = 366

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 97/201 (48%), Gaps = 49/201 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTPDN+K AEA +  +P G + +A+IP+L  AQ Q GWL  +A+ +VA  L+L  +R 
Sbjct: 13  FAFTPDNQKWAEAQMKKFPEGRQASAIIPILWRAQEQEGWLSRAAIEHVAAMLDLAYIRA 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVA+FY MF  +P+G          H+  C T  C +  ++ ++ V K K         
Sbjct: 73  LEVASFYFMFQLQPVGS-------VAHIQVCGTLSCMICGAEDLIGVCKDKITDKPHELS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  + + +IID+L AG+ P PGP      
Sbjct: 126 ADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTTERLSEIIDELAAGRVPTPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSL 215
              Q+GR+  A E    +TSL
Sbjct: 180 ---QNGRY--AAEPLKGLTSL 195


>gi|220924009|ref|YP_002499311.1| NADH-quinone oxidoreductase subunit E [Methylobacterium nodulans
           ORS 2060]
 gi|219948616|gb|ACL59008.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium nodulans
           ORS 2060]
          Length = 385

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 98/209 (46%), Gaps = 44/209 (21%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F FTP+N + A   I+ YP G + +AVIPLL  AQ Q+G WLP  A+  VAD L +P +R
Sbjct: 16  FAFTPENAEWARQQIAKYPEGRQASAVIPLLWRAQEQNGGWLPQKAIEAVADQLGMPHIR 75

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK-------- 156
           V EVATFYTMF  +P+G        +Y +  C T PC +  +  +  +++++        
Sbjct: 76  VLEVATFYTMFALEPVG--------RYWIQVCGTVPCDVCGAKDLKRMLEERLGPSGHVS 127

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                           CN  + +      +DL P+ + +++DDL AG+     P    S 
Sbjct: 128 PDGTFSWIEVECLGACCNAPMVQINHDYYEDLTPESLSKLMDDLAAGR-----PVKTGSQ 182

Query: 195 IGSQSGRFCQAREAYHDMTSLTGEPHGPW 223
           IG  S     A     D T   G   G W
Sbjct: 183 IGRTSSEPLGAVTTLTDETLFDGSRIGAW 211


>gi|167646793|ref|YP_001684456.1| NADH dehydrogenase subunit E [Caulobacter sp. K31]
 gi|167349223|gb|ABZ71958.1| NADH-quinone oxidoreductase, E subunit [Caulobacter sp. K31]
          Length = 228

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 37/172 (21%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F F+ +++ +A+   + YP   +++AVIP+L LAQ+Q GW+   A+  +A  L +P +RV
Sbjct: 14  FAFSTESQAKADWWKAKYPAERKQSAVIPMLWLAQKQEGWVSEPAIQEIAKQLQMPVIRV 73

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVATFY MF  +P+G+          +  C TTPC LR +  +  V+K K         
Sbjct: 74  LEVATFYVMFQLQPVGKVAF-------VQLCGTTPCQLRGALDLKAVLKAKIGQANDVSA 126

Query: 157 ---------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPG 187
                          CN  +        +DL P+ + QI+DD  AGK P PG
Sbjct: 127 DGKFSWEEVECLGACCNAPMAAINDYYYEDLTPESLAQILDDFAAGKSPKPG 178


>gi|365879272|ref|ZP_09418704.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           (NDH-1, chain E) [Bradyrhizobium sp. ORS 375]
 gi|365292797|emb|CCD91235.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           (NDH-1, chain E) [Bradyrhizobium sp. ORS 375]
          Length = 203

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 89/188 (47%), Gaps = 39/188 (20%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAM 91
           V R    +     F FT +N   A A I+ YP G + +AVI +L  AQ Q+ GW+  +A+
Sbjct: 3   VRRLAPKEVQPASFAFTDENLAFARAQIAKYPEGRQASAVIAILWRAQEQNEGWVSEAAI 62

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
             VAD L +P +RV EVATFYTMF  +P+G+       + H+  C TTPC LR ++ ++E
Sbjct: 63  RVVADMLGMPYIRVLEVATFYTMFQLQPVGK-------KAHVQVCGTTPCRLRGAEELIE 115

Query: 152 VIK-----------KKCNMMLER--------------------QDLEPKDMEQIIDDLKA 180
           V K           K  +   E                     +DL P+   +++D    
Sbjct: 116 VCKHRIHHDPFHLSKDGDFSWEEVECLGACVNAPMVQIWKDTYEDLTPESFGKVLDGFAT 175

Query: 181 GKKPAPGP 188
           G  P PGP
Sbjct: 176 GNLPTPGP 183


>gi|221638930|ref|YP_002525192.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides KD131]
 gi|221159711|gb|ACM00691.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sphaeroides
           KD131]
          Length = 303

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 93/202 (46%), Gaps = 49/202 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTP N + A+  ++ YP G + +A+IPLL  AQ Q GWL   A+ YVAD L +  +R 
Sbjct: 13  FAFTPANLEWAKGQMTKYPEGRQASAIIPLLFRAQEQEGWLTKPAIEYVADLLGMAYIRA 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVATFY MF  +P+G          H+  C TT C +  ++ ++ V K+K         
Sbjct: 73  LEVATFYFMFQLQPVGS-------VAHIQICGTTSCLICGAEELIRVCKEKIAPQPHMLS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  + +  +ID   AG+ P PGP      
Sbjct: 126 ADGRFSWEEVECLGACANAPMAQIGKDYYEDLNAETLAALIDRFSAGEVPRPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSLT 216
              Q+GRF  + E     TSLT
Sbjct: 180 ---QAGRF--SSEPAGGATSLT 196


>gi|39936012|ref|NP_948288.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris CGA009]
 gi|192291667|ref|YP_001992272.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris TIE-1]
 gi|39649866|emb|CAE28388.1| NADH-ubiquinone dehydrogenase chain E [Rhodopseudomonas palustris
           CGA009]
 gi|192285416|gb|ACF01797.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris
           TIE-1]
          Length = 249

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 87/175 (49%), Gaps = 39/175 (22%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMHYVADFLNLPKMR 104
           F FT +N   A+  I+ YP G + +AVI ++  AQ Q  GWLP +A+  VAD L +P +R
Sbjct: 16  FAFTAENLAWAQKEITKYPPGRQFSAVIAIMWRAQEQCGGWLPEAAIRTVADMLQMPHIR 75

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM----- 159
             EVATFYTMF   P+G+       + H+  C TTPC LR +  ++EV K + +      
Sbjct: 76  ALEVATFYTMFQLNPVGK-------KAHVQVCGTTPCRLRGAGELIEVCKNRIHHDPFHL 128

Query: 160 ---------------------MLE-----RQDLEPKDMEQIIDDLKAGKKPAPGP 188
                                M++      +DL P+ + +++D   +G  P PGP
Sbjct: 129 SADGDFSWEEVECAGACVNAPMVQIWKDTYEDLTPETLNKVLDGFASGNPPTPGP 183


>gi|126461946|ref|YP_001043060.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides ATCC 17029]
 gi|126103610|gb|ABN76288.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 303

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 93/202 (46%), Gaps = 49/202 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTP N + A+  ++ YP G + +A+IPLL  AQ Q GWL   A+ YVAD L +  +R 
Sbjct: 13  FAFTPANLEWAKGQMTKYPEGRQASAIIPLLFRAQEQEGWLTKPAIEYVADLLGMAYIRA 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVATFY MF  +P+G          H+  C TT C +  ++ ++ V K+K         
Sbjct: 73  LEVATFYFMFQLQPVGS-------VAHIQICGTTSCLICGAEELIRVCKEKIAPQPHMLS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  + +  +ID   AG+ P PGP      
Sbjct: 126 ADGRFSWEEVECLGACANAPMAQIGKDYYEDLNAETLAALIDRFSAGEVPRPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSLT 216
              Q+GRF  + E     TSLT
Sbjct: 180 ---QAGRF--SSEPAGGATSLT 196


>gi|77463074|ref|YP_352578.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides 2.4.1]
 gi|77387492|gb|ABA78677.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain E [Rhodobacter
           sphaeroides 2.4.1]
          Length = 303

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 93/202 (46%), Gaps = 49/202 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTP N + A+  ++ YP G + +A+IPLL  AQ Q GWL   A+ YVAD L +  +R 
Sbjct: 13  FAFTPANLEWAKGQMTKYPEGRQASAIIPLLFRAQEQEGWLTKPAIEYVADLLGMAYIRA 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVATFY MF  +P+G          H+  C TT C +  ++ ++ V K+K         
Sbjct: 73  LEVATFYFMFQLQPVGS-------VAHIQICGTTSCLICGAEELIRVCKEKIAPQPHMLS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  + +  +ID   AG+ P PGP      
Sbjct: 126 ADGRFSWEEVECLGACANAPMAQIGKDYYEDLNAETLAALIDRFSAGEVPRPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSLT 216
              Q+GRF  + E     TSLT
Sbjct: 180 ---QAGRF--SSEPAGGATSLT 196


>gi|332557947|ref|ZP_08412269.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides WS8N]
 gi|332275659|gb|EGJ20974.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides WS8N]
          Length = 303

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 93/202 (46%), Gaps = 49/202 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTP N + A+  ++ YP G + +A+IPLL  AQ Q GWL   A+ YVAD L +  +R 
Sbjct: 13  FAFTPANLEWAKGQMTKYPEGRQASAIIPLLFRAQEQEGWLTKPAIEYVADLLGMAYIRA 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVATFY MF  +P+G          H+  C TT C +  ++ ++ V K+K         
Sbjct: 73  LEVATFYFMFQLQPVGS-------VAHIQICGTTSCLICGAEELIRVCKEKIAPQPHMLS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  + +  +ID   AG+ P PGP      
Sbjct: 126 ADGRFSWEEVECLGACANAPMAQIGKDYYEDLTAETLAALIDRFSAGEVPRPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSLT 216
              Q+GRF  + E     TSLT
Sbjct: 180 ---QAGRF--SSEPAGGATSLT 196


>gi|400753911|ref|YP_006562279.1| NADH-quinone oxidoreductase chain 2 [Phaeobacter gallaeciensis
           2.10]
 gi|398653064|gb|AFO87034.1| NADH-quinone oxidoreductase chain 2 [Phaeobacter gallaeciensis
           2.10]
          Length = 397

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 97/202 (48%), Gaps = 49/202 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FT +N+  AEA I+ +P G + +A+IPLL  AQ Q GWL   A+ YVAD L +  +R 
Sbjct: 13  FAFTSENQTWAEAQITKFPDGRQASAIIPLLWRAQEQEGWLTKPAIEYVADMLGMAYIRA 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVA+FY MF  +P G     S+   H+  C TT C +  ++ ++ V + K         
Sbjct: 73  LEVASFYFMFQLQPTG-----SVA--HVQICGTTSCMICGAEDLIAVCQDKIANKPFTLS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  +   +++DDL AG+ P PGP      
Sbjct: 126 ADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAKLLDDLAAGQVPLPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSLT 216
              Q+GR+  A E    +TSLT
Sbjct: 180 ---QNGRY--AAEPKSGLTSLT 196


>gi|358255838|dbj|GAA57473.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Clonorchis
           sinensis]
          Length = 157

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 81/166 (48%), Gaps = 49/166 (29%)

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLR--NSDA 148
           M+ VA+ L +P MR YEVATFYTMF R+P+G        ++H+  CTTTPC L    SD 
Sbjct: 1   MNKVAEILGVPPMRAYEVATFYTMFNRQPVG--------KFHVQLCTTTPCMLGGVGSDI 52

Query: 149 ILEVIKKKCNM--------------------------MLE-----RQDLEPKDMEQIIDD 177
           IL+ I+K   +                          M++      +DL   D  +I+D+
Sbjct: 53  ILDTIQKHLGIKAGQTTKDNLFTLTEVECLGACVNAPMMQINDDYYEDLTADDTIRILDE 112

Query: 178 LKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPW 223
           LKAGKKP  GP         Q GRF  A E    +TSLT EP GP 
Sbjct: 113 LKAGKKPQKGPQ------SGQGGRF--ASEPKGGLTSLTTEPRGPG 150


>gi|312131898|ref|YP_003999238.1| NADH dehydrogenase subunit e [Leadbetterella byssophila DSM 17132]
 gi|311908444|gb|ADQ18885.1| NADH dehydrogenase subunit E [Leadbetterella byssophila DSM 17132]
          Length = 161

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 71/112 (63%), Gaps = 8/112 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
           FT DN  +A+ II+ YP G +++A++PLL LAQ QHGW+  + M Y+A+ L +  + VYE
Sbjct: 6   FTEDNWAKAQEIIARYPEGRQKSALLPLLHLAQEQHGWVSPAVMDYIAEILKIQPVEVYE 65

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           VATFYTMF  +P+G    K +++Y    C T PC     + + + +K++  +
Sbjct: 66  VATFYTMFHLEPVG----KHVIEY----CRTGPCCTVGGEEVYDHLKERLGI 109


>gi|433774830|ref|YP_007305297.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium australicum
           WSM2073]
 gi|433666845|gb|AGB45921.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium australicum
           WSM2073]
          Length = 337

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 88/174 (50%), Gaps = 40/174 (22%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           I  YP G E++A+IPLL +AQ Q GW+  +A+  ++D L +P++R  EVATFYT +   P
Sbjct: 30  IKKYPKGREQSAIIPLLMIAQEQEGWVTKAAIETISDMLGMPRIRGLEVATFYTQYQLNP 89

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN--------------------- 158
           +G        + H+  C TTPC LR S+A+++V + K +                     
Sbjct: 90  VG-------TRAHIQVCGTTPCMLRGSEALMDVCRSKIHHDQFHTNDKGTLSWEEVECLG 142

Query: 159 -------MMLER---QDLEPKDMEQIIDDLKAGKKPA--PGPSGYTSGIGSQSG 200
                  +M+ +   +DL P+ + +IID   AGK  +  PGP    +G    SG
Sbjct: 143 ACVNAPMVMVFKDTFEDLTPERLAEIIDLYDAGKGASVTPGPQNGRTGSEPASG 196


>gi|357384367|ref|YP_004899091.1| NADH-ubiquinone oxidoreductase subunit E [Pelagibacterium
           halotolerans B2]
 gi|351593004|gb|AEQ51341.1| NADH-ubiquinone oxidoreductase chain E [Pelagibacterium
           halotolerans B2]
          Length = 408

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 7/125 (5%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  ++      F F+ +N   A   I++YP G +++AVIPLL  AQ Q GW+  + 
Sbjct: 1   MSVRRLAEETVQPASFSFSKENTAWARKRIAMYPAGRQQSAVIPLLMRAQEQDGWVSRAT 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  VA  L++P +RV EVATFYT F  +P+G        + H+  C TTPC LR ++ I 
Sbjct: 61  IESVAQMLDMPYIRVLEVATFYTQFQLQPVGS-------RAHIQVCGTTPCMLRGAEDIR 113

Query: 151 EVIKK 155
            V +K
Sbjct: 114 AVCQK 118


>gi|429208413|ref|ZP_19199665.1| NADH-ubiquinone oxidoreductase chain E [Rhodobacter sp. AKP1]
 gi|428188668|gb|EKX57228.1| NADH-ubiquinone oxidoreductase chain E [Rhodobacter sp. AKP1]
          Length = 303

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 93/202 (46%), Gaps = 49/202 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTP N + A+  ++ YP G + +A+IPLL  AQ Q GWL   A+ YVAD L +  +R 
Sbjct: 13  FAFTPANLEWAKGQMTKYPEGRQASAIIPLLFRAQEQEGWLTKPAIEYVADLLGMAYIRA 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVATFY MF  +P+G          H+  C TT C +  ++ ++ V ++K         
Sbjct: 73  LEVATFYFMFQLQPVGS-------VAHIQICGTTSCLICGAEELIRVCREKIAPQPHMLS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  + +  +ID   AG+ P PGP      
Sbjct: 126 ADGRFSWEEVECLGACANAPMAQIGKDYYEDLNAETLAALIDRFSAGEVPRPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSLT 216
              Q+GRF  + E     TSLT
Sbjct: 180 ---QAGRF--SSEPAGGATSLT 196


>gi|255263626|ref|ZP_05342968.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit
           [Thalassiobium sp. R2A62]
 gi|255105961|gb|EET48635.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit
           [Thalassiobium sp. R2A62]
          Length = 366

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 97/202 (48%), Gaps = 49/202 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTP N+K AEA I+ YP G + +A+IPLL  AQ Q GWL   A+ +V+  L+L  +R 
Sbjct: 13  FAFTPANQKWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLTRPAIEHVSTMLDLAFIRG 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVA+FY MF  +P+G          H+  C T  C +  ++ ++ V + K         
Sbjct: 73  LEVASFYFMFQLQPVGS-------VAHIQICGTLSCMICGAEDLIGVCQDKIAAKPHHLS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  + + +II++L AGK P PGP      
Sbjct: 126 ADGKFSWEEVECLGACANAPMAQIGKDYYEDLNTERLVEIIEELDAGKVPTPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSLT 216
              Q+GRF  A E    +TSLT
Sbjct: 180 ---QNGRF--AAEPLSGLTSLT 196


>gi|316933896|ref|YP_004108878.1| NADH-quinone oxidoreductase subunit E [Rhodopseudomonas palustris
           DX-1]
 gi|315601610|gb|ADU44145.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris
           DX-1]
          Length = 249

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 87/175 (49%), Gaps = 39/175 (22%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMHYVADFLNLPKMR 104
           F FT +N   A+  I+ YP G + +AVI ++  AQ Q  GWLP +A+  VAD L +P +R
Sbjct: 16  FAFTAENLAWAQKEITKYPPGRQFSAVIAIMWRAQEQCGGWLPEAAIRAVADMLQMPHIR 75

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM----- 159
             EVATFYTMF   P+G+       + H+  C TTPC LR +  ++EV K + +      
Sbjct: 76  ALEVATFYTMFQLNPVGK-------KAHVQVCGTTPCRLRGAGELIEVCKNRIHHDPFHL 128

Query: 160 ---------------------MLE-----RQDLEPKDMEQIIDDLKAGKKPAPGP 188
                                M++      +DL P+ + +++D   +G  P PGP
Sbjct: 129 SADGDFSWEEVECAGACVNAPMVQIFKDVYEDLTPETLNKVLDGFASGHPPQPGP 183


>gi|126727147|ref|ZP_01742984.1| ATP synthase subunit E [Rhodobacterales bacterium HTCC2150]
 gi|126703575|gb|EBA02671.1| ATP synthase subunit E [Rhodobacterales bacterium HTCC2150]
          Length = 379

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 49/201 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTP N+  A A ++ +P G + +A+IPLL  AQ Q GWL   A+ ++A  L++  +R 
Sbjct: 13  FAFTPANETWARAQMTKFPEGRQASAIIPLLWRAQEQEGWLTRPAIEHIAAMLDMAYIRA 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER-- 163
            EVATFY MF   P+G          H+  C TT C +  ++A++EV +++         
Sbjct: 73  LEVATFYFMFQLAPVGS-------VAHVQICGTTSCMICGAEALIEVCQQEIAAKAHNLS 125

Query: 164 -----------------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                                        +DL P+ + +I+ +L AG+ P PGP      
Sbjct: 126 DDGKFSWEEVECLGACSNAPMVQIGKDFYEDLTPEKLREILGELAAGRVPTPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSL 215
              Q+GR+  A E    +TSL
Sbjct: 180 ---QNGRY--AAEPLSGLTSL 195


>gi|163759538|ref|ZP_02166623.1| NADH dehydrogenase subunit E [Hoeflea phototrophica DFL-43]
 gi|162283135|gb|EDQ33421.1| NADH dehydrogenase subunit E [Hoeflea phototrophica DFL-43]
          Length = 395

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 70/126 (55%), Gaps = 7/126 (5%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + V R  ++     +F F  +   +A+  I  YP    ++AVIPLL LAQ Q GW+   A
Sbjct: 1   MSVRRLAEESVQPAEFAFNREFAAQAKTWIKKYPKERAQSAVIPLLMLAQEQDGWVTKPA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           +  +AD L +P +R  EVATFYT F  KP+G        + H+  C TTPC LR S+ ++
Sbjct: 61  IETIADMLGMPYIRALEVATFYTQFQLKPVG-------TRAHIQVCGTTPCMLRGSEELM 113

Query: 151 EVIKKK 156
           EV + K
Sbjct: 114 EVCRSK 119


>gi|340502079|gb|EGR28796.1| NADH-ubiquinone oxidoreductase subunit, putative [Ichthyophthirius
           multifiliis]
          Length = 273

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 83/150 (55%), Gaps = 10/150 (6%)

Query: 7   KLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLD-VKFEFTPDNKKRAEAIISIYPV 65
           K  S  + Q +  L+    L + +        D N D   FEFT +N ++ E I++ YP 
Sbjct: 4   KKLSKTLPQQIFKLNVNTPLFYSSGLPSHKINDFNTDSTPFEFTDENYQKIEKILAKYPK 63

Query: 66  GHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEER 124
             +R+AV+PLL LAQ Q+  ++ +S+M  +A  L +  M VYEVA+FYTM+ R+P+G   
Sbjct: 64  KQKRSAVMPLLYLAQEQNNNYVSLSSMKKIAKILEIADMEVYEVASFYTMYNREPVG--- 120

Query: 125 IKSILQYHLNWCTTTPCWLRNSDAILEVIK 154
                ++H+  C TTPC L  S  I + I+
Sbjct: 121 -----KFHIQICGTTPCQLCGSREITKAIE 145


>gi|254560049|ref|YP_003067144.1| NADH-quinone oxidoreductase subunit E [Methylobacterium extorquens
           DM4]
 gi|254267327|emb|CAX23159.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           [Methylobacterium extorquens DM4]
          Length = 412

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 96/205 (46%), Gaps = 59/205 (28%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F FTP+N   A   I+ YP G + +AVIPLL  AQ Q+G WLP  A+  VAD L +P +R
Sbjct: 16  FAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQKAIEAVADELGMPHIR 75

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPC----------------------- 141
           V EVATFYTMF  +P+G        ++ +  C T PC                       
Sbjct: 76  VLEVATFYTMFALEPVG--------RFWIQVCGTVPCDCCGAKELKASLHERLGPSGKVT 127

Query: 142 ------WLRNSDAILEVIKKKCNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPS 189
                 WL      +E +   CN  + +      +DL P+ + +++DDL AG+       
Sbjct: 128 ADGNFSWLE-----VECLGACCNAPMVQINQDYYEDLTPESLNKLMDDLAAGR------- 175

Query: 190 GYTSGIGSQSGRF-CQAREAYHDMT 213
                +GSQ GR   + ++A + +T
Sbjct: 176 --PVKVGSQIGRVSSEPKDAVNTLT 198


>gi|375150249|ref|YP_005012690.1| NADH dehydrogenase subunit E [Niastella koreensis GR20-10]
 gi|361064295|gb|AEW03287.1| NADH dehydrogenase subunit E [Niastella koreensis GR20-10]
          Length = 166

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 65/111 (58%), Gaps = 9/111 (8%)

Query: 47  EFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMRV 105
           +F+ +   +   II+ YP G +++A+IP+L +AQ + G WL    M YVA  LNL  + V
Sbjct: 3   QFSAEKLTKVNEIIARYPAGKQKSALIPILHIAQEEFGGWLSSETMDYVASLLNLEPIEV 62

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           YEVATFY+M+  KP+G        +Y    C T PC L  SD I+E IK K
Sbjct: 63  YEVATFYSMYNLKPVG--------KYVFEVCQTGPCMLNGSDDIIEYIKNK 105


>gi|91977352|ref|YP_570011.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisB5]
 gi|91683808|gb|ABE40110.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 249

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 87/175 (49%), Gaps = 39/175 (22%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMHYVADFLNLPKMR 104
           F FT +N   A+  I+ YP G + +AVI ++  AQ Q  GWLP +A+  + D L +P +R
Sbjct: 16  FAFTEENLAWAKREITKYPPGRQFSAVIAIMWRAQEQCGGWLPEAAIRVIGDMLGMPHIR 75

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM----- 159
             EVATFYTMF   P+G+       + H+  C TTPC LR +  ++EV K + +      
Sbjct: 76  ALEVATFYTMFQLNPVGK-------KAHVQVCGTTPCRLRGAGELIEVCKSRIHHDPLHL 128

Query: 160 ---------------------MLE-----RQDLEPKDMEQIIDDLKAGKKPAPGP 188
                                M++      +DL P+ + +++D   +G KP PGP
Sbjct: 129 SADGDFSWEEVECAGACVNAPMVQIWKDTYEDLTPESLNKVLDGFVSGNKPKPGP 183


>gi|163850513|ref|YP_001638556.1| NADH-quinone oxidoreductase subunit E [Methylobacterium extorquens
           PA1]
 gi|218529210|ref|YP_002420026.1| NADH-quinone oxidoreductase subunit E [Methylobacterium extorquens
           CM4]
 gi|163662118|gb|ABY29485.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium extorquens
           PA1]
 gi|218521513|gb|ACK82098.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium extorquens
           CM4]
          Length = 412

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 94/214 (43%), Gaps = 54/214 (25%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F FTP+N   A   I+ YP G + +AVIPLL  AQ Q+G WLP  A+  VAD L +P +R
Sbjct: 16  FAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQKAIEAVADELGMPHIR 75

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPC----------------------- 141
           V EVATFYTMF  +P+G        ++ +  C T PC                       
Sbjct: 76  VLEVATFYTMFALEPVG--------RFWIQVCGTVPCDCCGAKELKASLHERLGPSGKVT 127

Query: 142 ------WLRNSDAILEVIKKKCNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPS 189
                 WL      +E +   CN  + +      +DL P+ + +++DDL AG+     P 
Sbjct: 128 ADGNFSWLE-----VECLGACCNAPMVQINQDYYEDLTPESLNKLMDDLAAGR-----PV 177

Query: 190 GYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGPW 223
              S IG  S     A     D +   G   G W
Sbjct: 178 KVGSQIGRVSSEPKDAVNTLTDESLFDGSRVGAW 211


>gi|16126193|ref|NP_420757.1| NADH dehydrogenase subunit E [Caulobacter crescentus CB15]
 gi|221234964|ref|YP_002517400.1| NADH dehydrogenase subunit E [Caulobacter crescentus NA1000]
 gi|13423409|gb|AAK23925.1| NADH dehydrogenase I, E subunit [Caulobacter crescentus CB15]
 gi|220964136|gb|ACL95492.1| NADH-quinone oxidoreductase chain E [Caulobacter crescentus NA1000]
          Length = 228

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 37/172 (21%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F F+ D++ +A+   + YP   +++AVIP+L LAQ+Q GW+   A+  +A  L +P +RV
Sbjct: 14  FAFSKDSQAKADWWKAKYPAERKQSAVIPMLWLAQKQEGWISEPAIQEIAKQLEMPVIRV 73

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVATFY MF  +P+G+          +  C TTPC LR +  + +V++ K         
Sbjct: 74  LEVATFYVMFQLQPVGKVAF-------VQLCGTTPCQLRGALDLRKVLEDKIGPAHHVSA 126

Query: 157 ---------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPG 187
                          CN  +        +DL P+ + +I+DD  AGK P PG
Sbjct: 127 DGKFSWEEVECLGACCNAPMAAINDYYYEDLTPESLAKILDDFAAGKAPKPG 178


>gi|54299980|gb|AAV32681.1| hydrogenosomal NADH dehydrogenase 24 kDa subunit [Nyctotherus
           ovalis]
          Length = 259

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 76/123 (61%), Gaps = 9/123 (7%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPIS 89
           L  H +T ++N D  FEFTP+N K   +++  YP  ++++AV+ LL LAQ+Q+G +L ++
Sbjct: 26  LVTHHETPENNDDTYFEFTPENYKIINSLLKRYPDNYKKSAVLYLLHLAQKQNGNFLTLA 85

Query: 90  AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           AM+ VA  L +  + VYEVA FY+MF R+ +G+ R        L  C TTPC L  +  I
Sbjct: 86  AMNKVAKILEMTNLNVYEVAAFYSMFNREKVGKIR--------LQICGTTPCLLCGARDI 137

Query: 150 LEV 152
           ++ 
Sbjct: 138 MKA 140


>gi|240137578|ref|YP_002962049.1| NADH dehydrogenase I subunit E [Methylobacterium extorquens AM1]
 gi|418058652|ref|ZP_12696621.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium extorquens
           DSM 13060]
 gi|240007546|gb|ACS38772.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           [Methylobacterium extorquens AM1]
 gi|373567797|gb|EHP93757.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium extorquens
           DSM 13060]
          Length = 412

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 96/205 (46%), Gaps = 59/205 (28%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F FTP+N   A   I+ YP G + +AVIPLL  AQ Q+G WLP  A+  VAD L +P +R
Sbjct: 16  FAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQKAIEAVADELGMPHIR 75

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPC----------------------- 141
           V EVATFYTMF  +P+G        ++ +  C T PC                       
Sbjct: 76  VLEVATFYTMFALEPVG--------RFWIQVCGTVPCDCCGAKELKASLHERLGPSGKVT 127

Query: 142 ------WLRNSDAILEVIKKKCNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPS 189
                 WL      +E +   CN  + +      +DL P+ + +++DDL AG+       
Sbjct: 128 ADGNFSWLE-----VECLGACCNAPMVQINQDYYEDLTPESLNKLMDDLAAGR------- 175

Query: 190 GYTSGIGSQSGRF-CQAREAYHDMT 213
                +GSQ GR   + ++A + +T
Sbjct: 176 --PVKVGSQIGRVSSEPKDAVNTLT 198


>gi|399992238|ref|YP_006572478.1| NADH-quinone oxidoreductase chain 2 [Phaeobacter gallaeciensis DSM
           17395 = CIP 105210]
 gi|398656793|gb|AFO90759.1| NADH-quinone oxidoreductase chain 2 [Phaeobacter gallaeciensis DSM
           17395 = CIP 105210]
          Length = 397

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 97/202 (48%), Gaps = 49/202 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FT +N+  AEA I+ +P G + +A+IPLL  AQ Q GWL   A+ YVAD L +  +R 
Sbjct: 13  FAFTSENQTWAEAQITKFPDGRQASAIIPLLWRAQEQEGWLSKPAIEYVADMLGMAYIRA 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVA+FY MF  +P G     SI   H+  C TT C +  ++ ++ V + K         
Sbjct: 73  LEVASFYFMFQLQPTG-----SIA--HVQICGTTSCMICGAEDLIAVCQDKIANQPFTLS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  +   +++D+L AG+ P PGP      
Sbjct: 126 ADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAKLLDNLAAGQVPLPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSLT 216
              Q+GR+  A E    +TSLT
Sbjct: 180 ---QNGRY--AAEPKSGLTSLT 196


>gi|254453239|ref|ZP_05066676.1| NADH-quinone oxidoreductase chain e [Octadecabacter arcticus 238]
 gi|198267645|gb|EDY91915.1| NADH-quinone oxidoreductase chain e [Octadecabacter arcticus 238]
          Length = 354

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 91/204 (44%), Gaps = 49/204 (24%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
             F FTPDN   A A I+ YP G + +A+IPLL  AQ Q GWL   A+  VAD L L  M
Sbjct: 11  ASFAFTPDNLAWANAQITKYPEGRQASAIIPLLWRAQEQEGWLTRPAIESVADMLGLAFM 70

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK------- 156
           R  EVA+FY MF  KP+G          H+  C TT C +  ++ ++ V + K       
Sbjct: 71  RALEVASFYFMFQLKPVGS-------VAHIQVCGTTSCMICGAEDLVAVCQDKIAKNPHD 123

Query: 157 ------------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYT 192
                              N  + +      +DL    M  +ID L  G+ P PGP    
Sbjct: 124 VSADGKFSWEEVECLGSCSNAPMAQIGKDYYEDLTSAKMADLIDALARGEVPLPGP---- 179

Query: 193 SGIGSQSGRFCQAREAYHDMTSLT 216
                Q+GR+  A E    +T+LT
Sbjct: 180 -----QNGRY--AAEPLSGLTTLT 196


>gi|188580281|ref|YP_001923726.1| NADH-quinone oxidoreductase subunit E [Methylobacterium populi
           BJ001]
 gi|179343779|gb|ACB79191.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium populi
           BJ001]
          Length = 412

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 96/205 (46%), Gaps = 59/205 (28%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F FTP+N   A   I+ YP G + +AVIPLL  AQ Q+G WLP  A+  VAD L +P +R
Sbjct: 16  FAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQKAIEAVADQLGMPHIR 75

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPC----------------------- 141
           V EVATFYTMF  +P+G        ++ +  C T PC                       
Sbjct: 76  VLEVATFYTMFALEPVG--------RFWIQICGTVPCDCCGAKELKAALHDRLGPSGHVS 127

Query: 142 ------WLRNSDAILEVIKKKCNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPS 189
                 WL      +E +   CN  + +      +DL P+ + +++DDL AG+       
Sbjct: 128 ADGNFSWLE-----VECLGACCNAPMVQINQDYYEDLTPESLNKLMDDLAAGR------- 175

Query: 190 GYTSGIGSQSGRF-CQAREAYHDMT 213
                +GSQ GR   + ++A + +T
Sbjct: 176 --PVKVGSQIGRISSEPKDAVNTLT 198


>gi|254439091|ref|ZP_05052585.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
           [Octadecabacter antarcticus 307]
 gi|198254537|gb|EDY78851.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
           [Octadecabacter antarcticus 307]
          Length = 277

 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 92/204 (45%), Gaps = 49/204 (24%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
             F FTPDN   A A I+ YP G + +A+IPLL  AQ Q GWL   A+  VAD L L  M
Sbjct: 11  ASFAFTPDNLAWANAQITKYPEGRQASAIIPLLWRAQEQEGWLTRPAIEGVADMLGLAFM 70

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK------- 156
           R  EVA+FY MF  +P+G          H+  C TT C +  ++ ++ V + K       
Sbjct: 71  RALEVASFYFMFQLQPVGS-------VAHIQVCGTTSCMICGAEDLVAVCQDKIAKNPHE 123

Query: 157 ------------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYT 192
                              N  + +      +DL    M ++ID L  G+ P PGP    
Sbjct: 124 VSADGKFSWEEVECLGSCSNAPMAQIGKDYYEDLTAARMGELIDALARGEVPLPGP---- 179

Query: 193 SGIGSQSGRFCQAREAYHDMTSLT 216
                Q+GR+  A E    +T+LT
Sbjct: 180 -----QNGRY--AAEPLSGLTTLT 196


>gi|159043862|ref|YP_001532656.1| NADH dehydrogenase subunit E [Dinoroseobacter shibae DFL 12]
 gi|157911622|gb|ABV93055.1| NADH-quinone oxidoreductase, E subunit [Dinoroseobacter shibae DFL
           12]
          Length = 402

 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 95/202 (47%), Gaps = 49/202 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTP+N+  A   ++ +P G + +A+IP+L  AQ Q GWL   A+ YVAD L++P +R 
Sbjct: 13  FAFTPENEAWALTQMTKFPEGRQASAIIPILWRAQEQEGWLSKPAIEYVADMLDMPYIRA 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVATFY MF  +P+G          H+  C TT C +  ++ ++ V K+K         
Sbjct: 73  LEVATFYFMFQLQPVGS-------VAHIQICGTTSCMICGAEDLVAVCKEKIAPRAHQLS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  +    ++D + AG+ P PGP      
Sbjct: 126 ADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTVESFSALLDRMAAGEVPVPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSLT 216
              Q+GR+    E    +TSLT
Sbjct: 180 ---QNGRYTS--EPAGGLTSLT 196


>gi|222475163|ref|YP_002563579.1| NADH dehydrogenase subunit E [Anaplasma marginale str. Florida]
 gi|255003147|ref|ZP_05278111.1| NADH dehydrogenase subunit E [Anaplasma marginale str. Puerto Rico]
 gi|255004273|ref|ZP_05279074.1| NADH dehydrogenase subunit E [Anaplasma marginale str. Virginia]
 gi|222419300|gb|ACM49323.1| NADH dehydrogenase I chain E (nuoE) [Anaplasma marginale str.
           Florida]
          Length = 169

 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 66/117 (56%), Gaps = 9/117 (7%)

Query: 40  DNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMHYVADFL 98
           D    KFEFTP+N + A   IS YP   + +AV+PLL L Q Q  G++P SA+ Y+AD L
Sbjct: 2   DQSSEKFEFTPENLEEARKYISHYPDDRKSSAVMPLLHLVQSQAGGFIPQSAIGYIADLL 61

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
            +  + V EV  FY+M+   P+G        +Y +  C TTPCWLR    IL   KK
Sbjct: 62  GMRPVHVREVVEFYSMYNTAPVG--------KYLVQVCRTTPCWLRGGSDILNTCKK 110


>gi|162148807|ref|YP_001603268.1| NADH-quinone oxidoreductase subunit E [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787384|emb|CAP56979.1| NADH-quinone oxidoreductase chain E [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 219

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 85/194 (43%), Gaps = 46/194 (23%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG------WLPISAMHYVADFLN 99
           F F  +++     I+  YP   + +  +PLL +AQ+Q G      W+P  AM  +A  L 
Sbjct: 19  FAFDAESEAEIATILVKYPPERKASGTLPLLYVAQKQMGRVTGSAWVPRVAMDEIARRLE 78

Query: 100 LPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           +  +RVYEVATFY MF  KPIG        +YHL  CTTT CWLR SD ++   KK   +
Sbjct: 79  VAPIRVYEVATFYLMFNTKPIG--------RYHLQVCTTTSCWLRGSDDVVAACKKATGI 130

Query: 160 MLERQ--------------------------------DLEPKDMEQIIDDLKAGKKPAPG 187
               Q                                DL+     ++I+ L+ G +P PG
Sbjct: 131 SAFGQSSADGLFTLTEVECLGGCSNAPILQVDDDFYEDLDGPRTIELIEALRRGDRPKPG 190

Query: 188 PSGYTSGIGSQSGR 201
           P+    G     GR
Sbjct: 191 PTIDRMGAAPAGGR 204


>gi|114764723|ref|ZP_01443908.1| ATP synthase subunit E [Pelagibaca bermudensis HTCC2601]
 gi|114542923|gb|EAU45944.1| ATP synthase subunit E [Pelagibaca bermudensis HTCC2601]
          Length = 382

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 90/188 (47%), Gaps = 47/188 (25%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FT  N   AE  IS YP G + +AVIPLL  AQ Q GWL   A+  VA+ L++  +RV
Sbjct: 13  FAFTQANMAWAEGQISKYPAGRQASAVIPLLWRAQEQEGWLSRPAIEAVAEMLDMAYIRV 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVATFY MF  +P+G     S+   H+  C TT C +  ++ ++ V K K         
Sbjct: 73  LEVATFYFMFQLQPVG-----SVA--HVQICGTTTCMICGAEDLMAVCKDKIAPKAHEVS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  + + +I+D+L AGK P PGP      
Sbjct: 126 ADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTAERLSEILDELAAGKVPVPGP------ 179

Query: 195 IGSQSGRF 202
              Q+GR+
Sbjct: 180 ---QNGRY 184


>gi|209545445|ref|YP_002277674.1| NADH-quinone oxidoreductase subunit E [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533122|gb|ACI53059.1| NADH-quinone oxidoreductase, E subunit [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 216

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 85/194 (43%), Gaps = 46/194 (23%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG------WLPISAMHYVADFLN 99
           F F  +++     I+  YP   + +  +PLL +AQ+Q G      W+P  AM  +A  L 
Sbjct: 16  FAFDAESEAEIATILVKYPPERKASGTLPLLYVAQKQMGRVTGSAWVPRVAMDEIARRLE 75

Query: 100 LPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           +  +RVYEVATFY MF  KPIG        +YHL  CTTT CWLR SD ++   KK   +
Sbjct: 76  VAPIRVYEVATFYLMFNTKPIG--------RYHLQVCTTTSCWLRGSDDVVAACKKATGI 127

Query: 160 MLERQ--------------------------------DLEPKDMEQIIDDLKAGKKPAPG 187
               Q                                DL+     ++I+ L+ G +P PG
Sbjct: 128 SAFGQSSADGLFTLTEVECLGGCSNAPILQVDDDFYEDLDGPRTIELIEALRRGDRPKPG 187

Query: 188 PSGYTSGIGSQSGR 201
           P+    G     GR
Sbjct: 188 PTIDRMGAAPAGGR 201


>gi|83951743|ref|ZP_00960475.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Roseovarius
           nubinhibens ISM]
 gi|83836749|gb|EAP76046.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Roseovarius
           nubinhibens ISM]
          Length = 437

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 97/202 (48%), Gaps = 49/202 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F F+  N+  AE  I+ YP G + +A+IPLL  AQ Q GWL   A+ +VAD L +  +R 
Sbjct: 13  FAFSAANQAWAEGQIAKYPEGRQASAIIPLLWRAQEQEGWLTRPAIEHVADMLGMAYIRA 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKC-------- 157
            EVA+FY MF  +P+G     S+  + +  C TT C +  ++ ++ V ++K         
Sbjct: 73  LEVASFYFMFQMQPVG-----SVAHFQI--CGTTSCMICGAEDLVAVCREKVAPNPHELS 125

Query: 158 -----------------NMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  +   +IID++ AGK P PGP      
Sbjct: 126 PDGKFSWEEVECLGACTNAPMAQIGKDYYEDLTAERFAEIIDEMAAGKTPLPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSLT 216
              Q+GR+  A E    +TSLT
Sbjct: 180 ---QNGRY--AAEPKSGLTSLT 196


>gi|256425964|ref|YP_003126617.1| NADH-quinone oxidoreductase subunit E [Chitinophaga pinensis DSM
           2588]
 gi|256040872|gb|ACU64416.1| NADH-quinone oxidoreductase, E subunit [Chitinophaga pinensis DSM
           2588]
          Length = 161

 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 67/113 (59%), Gaps = 9/113 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQR-QHGWLPISAMHYVADFLNLPKMRVY 106
           F+ +   + + II+ YP G +++A+IP+L LAQ    GWL    M YVA  L +  + VY
Sbjct: 2   FSEEKLNKVKEIIARYPAGKQKSALIPVLHLAQEVSGGWLSSETMDYVASLLQITPIEVY 61

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           EVATFY+MF  +P+G        +Y    C T PC LR SD I++ IKKK ++
Sbjct: 62  EVATFYSMFNLQPVG--------RYVFEVCQTGPCMLRGSDNIIDYIKKKLDI 106


>gi|300775176|ref|ZP_07085038.1| NADH-quinone oxidoreductase subunit E [Chryseobacterium gleum ATCC
           35910]
 gi|300505916|gb|EFK37052.1| NADH-quinone oxidoreductase subunit E [Chryseobacterium gleum ATCC
           35910]
          Length = 169

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 86/158 (54%), Gaps = 23/158 (14%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMRVY 106
           F P++  +   II+ YP G +++A++P+L LAQ++ G WL +  M YVA  L++  + VY
Sbjct: 7   FKPESLAQVHKIIARYPEGRQKSALLPVLHLAQKEFGGWLDVPVMDYVAGLLSIKPIEVY 66

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLERQDL 166
           EVATFYTMF  KP+G        +Y L  C T PC +  S+ IL+ I+ K N+       
Sbjct: 67  EVATFYTMFNMKPVG--------KYVLEVCRTGPCMVCGSEKILDHIRTKLNI------- 111

Query: 167 EPKDMEQIIDDLKAGKKPAP--GPSGYTSGIGSQSGRF 202
             KD E   D +    KPA   G  GY   +  Q G+F
Sbjct: 112 --KDGETTEDGMFT-LKPAECLGACGYAPMM--QLGKF 144


>gi|399024987|ref|ZP_10727005.1| NADH-quinone oxidoreductase, E subunit [Chryseobacterium sp. CF314]
 gi|398079088|gb|EJL69960.1| NADH-quinone oxidoreductase, E subunit [Chryseobacterium sp. CF314]
          Length = 169

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 87/158 (55%), Gaps = 23/158 (14%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMRVY 106
           F P++ ++   II+ YP G +++A++P+L LAQ++ G WL +  M YVA+ L++  + VY
Sbjct: 7   FKPESLEQVHKIIARYPEGRQKSALLPVLHLAQKEFGGWLDVPVMDYVAELLSIKPIEVY 66

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLERQDL 166
           EVATFYTMF  KP+G        +Y L  C T PC +  S+ IL  I+ + N+       
Sbjct: 67  EVATFYTMFNMKPVG--------KYVLEVCRTGPCMVCGSEKILNHIRTRLNI------- 111

Query: 167 EPKDMEQIIDDLKAGKKPAP--GPSGYTSGIGSQSGRF 202
             KD E   D +    KPA   G  GY   +  Q G+F
Sbjct: 112 --KDGETTEDGMFT-LKPAECLGACGYAPMM--QLGKF 144


>gi|84502610|ref|ZP_01000729.1| ATP synthase subunit E [Oceanicola batsensis HTCC2597]
 gi|84389005|gb|EAQ01803.1| ATP synthase subunit E [Oceanicola batsensis HTCC2597]
          Length = 460

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 105/215 (48%), Gaps = 54/215 (25%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMH 92
           +H+D  +      F FTP+N+K AEA ++ YP G + +A+IPLL  AQ Q GWL   A+ 
Sbjct: 5   LHKDQPE-----SFAFTPENQKWAEAQMTKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV 152
           ++A  L++  +R  EVATFY MF   P+G     S+   H+  C TT C +  ++ ++ V
Sbjct: 60  HIAAMLDMAYIRALEVATFYFMFQLAPVG-----SVA--HVQICGTTSCMICGAEDLIAV 112

Query: 153 IKK--------------------KC-----NMMLER------QDLEPKDMEQIIDDLKAG 181
            ++                    +C     N  + +      +DL  + + +I+ +L  G
Sbjct: 113 CQEMIAPKAHEVSADGKFSWEEVECLGACANAPMAQIGKDYYEDLTAERLREILGELAEG 172

Query: 182 KKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLT 216
           K P PGP         Q+GR+  A E    +TSLT
Sbjct: 173 KVPVPGP---------QNGRY--AAEPLKGLTSLT 196


>gi|398822692|ref|ZP_10581069.1| NADH-quinone oxidoreductase, E subunit [Bradyrhizobium sp. YR681]
 gi|398226642|gb|EJN12887.1| NADH-quinone oxidoreductase, E subunit [Bradyrhizobium sp. YR681]
          Length = 203

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 88/188 (46%), Gaps = 39/188 (20%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAM 91
           V R    +     F FT +N   A+  I+ YP G + +AVI +L  AQ QH GW+  +A+
Sbjct: 3   VRRLAPKEVQPASFAFTQENLAFAKQQIAKYPAGRQASAVIAILWRAQEQHDGWVSEAAI 62

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
             +AD L++P +RV EVATFYTMF   P+G+       + H+  C TTPC LR ++ ++ 
Sbjct: 63  RVIADMLDMPYIRVLEVATFYTMFQLAPVGK-------KAHVQVCGTTPCRLRGAEDLIH 115

Query: 152 V-----------IKKKCNMMLER--------------------QDLEPKDMEQIIDDLKA 180
           V           + K  N   E                     +DL  +   +++D   +
Sbjct: 116 VCEHRIHHEPFHLSKDGNFSWEEVECLGACVNAPMVLIGKDTYEDLTKESFGKVLDGFAS 175

Query: 181 GKKPAPGP 188
           G  P PGP
Sbjct: 176 GNPPKPGP 183


>gi|408675024|ref|YP_006874772.1| NADH-quinone oxidoreductase, E subunit [Emticicia oligotrophica DSM
           17448]
 gi|387856648|gb|AFK04745.1| NADH-quinone oxidoreductase, E subunit [Emticicia oligotrophica DSM
           17448]
          Length = 164

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 68/112 (60%), Gaps = 8/112 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
           FTP+   + + II+ YP G +++A++P++ LAQ Q  W+    M YVA  LN+  + VYE
Sbjct: 9   FTPERLAKVQEIIARYPEGRQKSALLPIMHLAQEQFAWMSTEVMDYVASLLNIKPVEVYE 68

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           VATFYTMF  +P+G    K +++Y    C T PC L   + + + ++KK  +
Sbjct: 69  VATFYTMFHLEPVG----KHVIEY----CRTGPCVLMGGEEVFDHLQKKLGI 112


>gi|56416799|ref|YP_153873.1| NADH dehydrogenase subunit E [Anaplasma marginale str. St. Maries]
 gi|269958789|ref|YP_003328577.1| NADH dehydrogenase subunit E [Anaplasma centrale str. Israel]
 gi|56388031|gb|AAV86618.1| NADH dehydrogenase chain E [Anaplasma marginale str. St. Maries]
 gi|269848619|gb|ACZ49263.1| NADH dehydrogenase subunit E [Anaplasma centrale str. Israel]
          Length = 169

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 66/117 (56%), Gaps = 9/117 (7%)

Query: 40  DNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMHYVADFL 98
           D    KFEFTP+N + A   IS YP   + +AV+PLL L Q Q  G++P SA+ Y+AD L
Sbjct: 2   DQRSEKFEFTPENLEEARKHISHYPDDRKSSAVMPLLHLVQSQAGGFIPQSAIGYIADLL 61

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
            +  + V EV  FY+M+   P+G        +Y +  C TTPCWLR    IL   KK
Sbjct: 62  GMRPVHVREVVEFYSMYNTAPVG--------KYLVQVCRTTPCWLRGGSDILNTCKK 110


>gi|254995001|ref|ZP_05277191.1| NADH dehydrogenase subunit E [Anaplasma marginale str. Mississippi]
          Length = 169

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 66/117 (56%), Gaps = 9/117 (7%)

Query: 40  DNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMHYVADFL 98
           D    KFEFTP+N + A   IS YP   + +AV+PLL L Q Q  G++P SA+ Y+AD L
Sbjct: 2   DQRSEKFEFTPENLEEARKHISHYPDDRKSSAVMPLLHLVQSQTGGFIPQSAIGYIADLL 61

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
            +  + V EV  FY+M+   P+G        +Y +  C TTPCWLR    IL   KK
Sbjct: 62  GMRPVHVREVVEFYSMYNTAPVG--------KYLVQVCRTTPCWLRGGSDILNTCKK 110


>gi|163746201|ref|ZP_02153560.1| NADH dehydrogenase subunit E [Oceanibulbus indolifex HEL-45]
 gi|161380946|gb|EDQ05356.1| NADH dehydrogenase subunit E [Oceanibulbus indolifex HEL-45]
          Length = 389

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 104/220 (47%), Gaps = 54/220 (24%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMH 92
           +H D  D      F FTP N++ AEA I+ +P G + +A+IPLL  AQ Q GWL   A+ 
Sbjct: 5   LHPDQPD-----SFAFTPANQEWAEAQITKFPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV 152
           +V++ L +  +R  EVATFY MF  +P+G     S+   H+  C TT C +  ++ ++ V
Sbjct: 60  HVSEMLGMAYIRGLEVATFYFMFQLQPVG-----SVA--HIQVCGTTSCMICGAEDLVAV 112

Query: 153 IKKK-------------------------CNMMLER------QDLEPKDMEQIIDDLKAG 181
            K++                          N  + +      +DL    + +I+D+L  G
Sbjct: 113 CKERIANKPHELSADGRFSWEEVECLGACSNAPMAQIGKDYYEDLTTARLNEILDELSDG 172

Query: 182 KKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
           + P PGP         Q+GR+  A E    +TSLT    G
Sbjct: 173 RVPVPGP---------QNGRY--ASEPLGGLTSLTDHESG 201


>gi|71655425|ref|XP_816297.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma cruzi
           strain CL Brener]
 gi|70881414|gb|EAN94446.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma cruzi]
          Length = 261

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 79/130 (60%), Gaps = 10/130 (7%)

Query: 34  HRDTKDDNLDVKFEFT-PDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAM 91
           H++T  +N  + ++F+    ++   AI+  +P    R+AVIPLL LAQRQ G ++P++AM
Sbjct: 28  HQNTDTNNTRIPWDFSIASYEEINNAILPKFPRSRRRSAVIPLLHLAQRQQGGYIPVTAM 87

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
           + +A    +P M+V+E  TFY+MF R+P+G        +YH+ +C TTPC L   D +++
Sbjct: 88  YKIARICEVPPMQVFETVTFYSMFNRQPVG--------KYHIQFCVTTPCMLCGCDELVQ 139

Query: 152 VIKKKCNMML 161
             +   N+ +
Sbjct: 140 RTEAYLNVKM 149


>gi|27380025|ref|NP_771554.1| NADH dehydrogenase subunit E [Bradyrhizobium japonicum USDA 110]
 gi|27353179|dbj|BAC50179.1| NADH ubiquinone oxidoreductase chain E [Bradyrhizobium japonicum
           USDA 110]
          Length = 203

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 88/188 (46%), Gaps = 39/188 (20%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAM 91
           V R    +     F FT +N   A+  I+ YP G + +AVI +L  AQ QH GW+  +A+
Sbjct: 3   VRRLAPKEVQPASFAFTEENLAFAKQQIAKYPAGRQASAVIAILWRAQEQHDGWVSEAAI 62

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
             +AD L++P +RV EVATFYTMF   P+G+       + H+  C TTPC LR ++ ++ 
Sbjct: 63  RVIADMLDMPYIRVLEVATFYTMFQLAPVGK-------KAHVQVCGTTPCRLRGAEDLIH 115

Query: 152 V-----------IKKKCNMMLER--------------------QDLEPKDMEQIIDDLKA 180
           V           + K  N   E                     +DL  +   +++D   +
Sbjct: 116 VCEHRIHHEPFHLSKDGNFSWEEVECLGACVNAPMVLIGKDTYEDLTKESFGKVLDGFAS 175

Query: 181 GKKPAPGP 188
           G  P PGP
Sbjct: 176 GNPPKPGP 183


>gi|254463640|ref|ZP_05077051.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e
           [Rhodobacterales bacterium Y4I]
 gi|206684548|gb|EDZ45030.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e
           [Rhodobacterales bacterium Y4I]
          Length = 389

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 97/202 (48%), Gaps = 49/202 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FTP N   AEA I+ YP G + +AVIPLL  AQ Q GW+   A+  +AD L +  +RV
Sbjct: 13  FAFTPANLAWAEAQITKYPEGRQASAVIPLLWRAQEQEGWVTKPAIEAIADMLGMAYIRV 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVA+FY MF  +P G     S+   H+  C TT C +  ++ ++ V ++K         
Sbjct: 73  LEVASFYFMFQLQPTG-----SVA--HVQICGTTSCMICGAEDLIAVCREKIAPKPFTLS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  +   +++DDL AG+  APGP      
Sbjct: 126 ADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAKLLDDLAAGQLVAPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSLT 216
              Q+GR+  A E    +TSLT
Sbjct: 180 ---QNGRY--AAEPKSGLTSLT 196


>gi|383771515|ref|YP_005450580.1| NADH-ubiquinone oxidoreductase subunit E [Bradyrhizobium sp.
           S23321]
 gi|381359638|dbj|BAL76468.1| NADH-ubiquinone oxidoreductase chain E [Bradyrhizobium sp. S23321]
          Length = 203

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 88/188 (46%), Gaps = 39/188 (20%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAM 91
           V R    +     F FT +N   A+  I+ YP G + +AVI +L  AQ QH GW+  +A+
Sbjct: 3   VRRLAPKEVQPASFAFTDENLAFAKQQIAKYPAGRQASAVIAILWRAQEQHDGWVSEAAI 62

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
             +AD L++P +RV EVATFYTMF   P+G+       + H+  C TTPC LR ++ ++ 
Sbjct: 63  RVIADMLDMPYIRVLEVATFYTMFQLAPVGK-------KAHVQVCGTTPCRLRGAEDLIH 115

Query: 152 V-----------IKKKCNMMLER--------------------QDLEPKDMEQIIDDLKA 180
           V           + K  N   E                     +DL  +   +++D   +
Sbjct: 116 VCEHRIHHEPFHLSKDGNFSWEEVECLGACVNAPMVLIGKDTYEDLTKESFGKVLDGFAS 175

Query: 181 GKKPAPGP 188
           G  P PGP
Sbjct: 176 GNPPKPGP 183


>gi|92117739|ref|YP_577468.1| NADH dehydrogenase subunit E [Nitrobacter hamburgensis X14]
 gi|91800633|gb|ABE63008.1| NADH dehydrogenase subunit E [Nitrobacter hamburgensis X14]
          Length = 228

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 39/190 (20%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPIS 89
           + V R    +     F F+ +N   A+  I  YP G + +A I +L  AQ QH GW+  +
Sbjct: 1   MSVRRLAPKEQQPESFAFSEENLAWAKKQIGQYPAGRQASAAIAILWRAQEQHDGWVSEA 60

Query: 90  AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           A+  VAD L++P +R+ E+ATFYTMF  +P+G+       + H+  C TTPC LR ++ I
Sbjct: 61  AIRTVADMLDMPYIRMLEIATFYTMFQLQPVGK-------KAHIQVCGTTPCRLRGAEDI 113

Query: 150 LEVIKKKCN---------------------------MML----ERQDLEPKDMEQIIDDL 178
           L V K + +                           M+L      +DL  ++  +++D  
Sbjct: 114 LAVCKNRIHHEPFHLSKDGDFSWEEVECLGSCVNAPMVLIWKDTYEDLTKENFGKVLDGF 173

Query: 179 KAGKKPAPGP 188
            +G+ P PGP
Sbjct: 174 ASGQPPKPGP 183


>gi|296116531|ref|ZP_06835141.1| NADH-quinone oxidoreductase, E subunit [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976743|gb|EFG83511.1| NADH-quinone oxidoreductase, E subunit [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 219

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/126 (39%), Positives = 67/126 (53%), Gaps = 14/126 (11%)

Query: 40  DNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG------WLPISAMHY 93
           D     F F  +++++   I++ YP   + + VIPLL + Q+Q G      W+P  AM  
Sbjct: 10  DAEPAAFAFDAESERQIAQILAKYPPERKASGVIPLLYVVQKQMGRLTGSAWVPRVAMDA 69

Query: 94  VADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVI 153
           VA  L +  +RVYEVATFY MF  KPIG        +YHL  CTTT CWLR SD +    
Sbjct: 70  VAHRLEMAPIRVYEVATFYLMFNTKPIG--------KYHLQVCTTTSCWLRGSDDVTAAC 121

Query: 154 KKKCNM 159
           K    +
Sbjct: 122 KAATGI 127


>gi|338214869|ref|YP_004658932.1| NADH-quinone oxidoreductase subunit E [Runella slithyformis DSM
           19594]
 gi|336308698|gb|AEI51800.1| NADH-quinone oxidoreductase, E subunit [Runella slithyformis DSM
           19594]
          Length = 166

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 69/112 (61%), Gaps = 8/112 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
           FTP+   +A+ II+ YP G +++A++PLL LAQ Q+GW+    M YVA  L++  + VYE
Sbjct: 10  FTPERLAKAQEIIARYPDGKQKSALLPLLHLAQEQYGWVSEEVMDYVAGLLSILPIEVYE 69

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           VA+FYTMF   P+G    K +++Y    C T PC L   + +   +K+K  +
Sbjct: 70  VASFYTMFHLDPVG----KHVIEY----CRTGPCCLMGGEDVYGYLKQKLGI 113


>gi|414162405|ref|ZP_11418652.1| NADH-quinone oxidoreductase, E subunit [Afipia felis ATCC 53690]
 gi|410880185|gb|EKS28025.1| NADH-quinone oxidoreductase, E subunit [Afipia felis ATCC 53690]
          Length = 212

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 92/190 (48%), Gaps = 39/190 (20%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPIS 89
           + V R    +     F FT +N   A+  I+ YP G +++AVI +L  AQ Q+ GW+  +
Sbjct: 1   MSVRRLAPKEQQPESFVFTDENLAWAKQQIAKYPEGRQQSAVIAILWRAQEQNEGWISEA 60

Query: 90  AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           A+  VAD L +  +RV E+ATFYTMF   P+G+       + H+  C TTPC LR S  +
Sbjct: 61  AIRAVADMLGMMHIRVMEIATFYTMFQLSPVGK-------KAHVQVCGTTPCMLRGSKDL 113

Query: 150 LEVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDL 178
           +EV K + +                            +M+ +   +DL P+   +++D  
Sbjct: 114 IEVCKHRIHHDPFHVSADGDFSWEEVECLGACVNAPMVMIWKDTYEDLTPESFNKVLDGF 173

Query: 179 KAGKKPAPGP 188
            AG  P PGP
Sbjct: 174 AAGNPPKPGP 183


>gi|157867454|ref|XP_001682281.1| putative NADH-ubiquinone oxidoreductase,mitochondrial [Leishmania
           major strain Friedlin]
 gi|68125734|emb|CAJ03471.1| putative NADH-ubiquinone oxidoreductase,mitochondrial [Leishmania
           major strain Friedlin]
          Length = 273

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 73/120 (60%), Gaps = 10/120 (8%)

Query: 34  HRDTKDDNLDVKFEFTPDN-KKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAM 91
           H++T  DN  + ++FT  + +K    I+  +P G   +A IPLL LAQ+Q G ++P++AM
Sbjct: 40  HQNTDYDNTRIPWDFTTSSYEKIHNEILPKFPRGRRISATIPLLHLAQQQQGGYIPVTAM 99

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
           + +A    +P M V+E  TFY+MF R P+G        +YH+ +C TTPC L  +D ++E
Sbjct: 100 YKIAKICEVPPMHVFETVTFYSMFNRHPVG--------KYHIQFCRTTPCMLCGADELME 151


>gi|365895271|ref|ZP_09433392.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           (NDH-1, chain E) [Bradyrhizobium sp. STM 3843]
 gi|365423990|emb|CCE05934.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           (NDH-1, chain E) [Bradyrhizobium sp. STM 3843]
          Length = 203

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 39/188 (20%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAM 91
           V R    +     F FT +N   A+A I+ YP G + +A I +L  AQ Q+ GW+  +A+
Sbjct: 3   VRRLAPKELQPASFAFTDENLAFAKAQIAKYPEGRQASAAIAILWRAQEQNEGWVSEAAI 62

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
             VAD L +P +R+ E+ATFYTMF  +P+G+       + H+  C TTPC LR ++ ++E
Sbjct: 63  RAVADMLQMPYIRMLEIATFYTMFQLQPVGK-------KAHVQVCGTTPCRLRGAEELIE 115

Query: 152 VIK-----------KKCNMMLER--------------------QDLEPKDMEQIIDDLKA 180
           V K           K  +   E                     +DL P+   +++D    
Sbjct: 116 VCKHRIHHDPFHLSKDGDFSWEEVECLGACVNAPMVQVWKDTYEDLTPESFGKVLDGFAT 175

Query: 181 GKKPAPGP 188
           G  P PGP
Sbjct: 176 GNPPKPGP 183


>gi|170748474|ref|YP_001754734.1| NADH-quinone oxidoreductase subunit E [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654996|gb|ACB24051.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium
           radiotolerans JCM 2831]
          Length = 457

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 93/188 (49%), Gaps = 48/188 (25%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F F+P+N + A+  I+ YP G + +AVI LL  AQ Q+G WLP +A+  VA  L +P +R
Sbjct: 16  FAFSPENAEWAKTQIAKYPEGRQASAVISLLWRAQEQNGGWLPRAAIEAVAAELGMPNIR 75

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK-------- 156
           V EVATFYTMF  +P+G        ++ +  C T PC    +  + E+++ +        
Sbjct: 76  VLEVATFYTMFALEPVG--------RFWIQVCGTVPCDSCGARGLKEMLQARLGPAGHVS 127

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                           CN  + +      +DL P+ + Q++DDL AG+            
Sbjct: 128 ADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLGQLMDDLAAGR---------PVK 178

Query: 195 IGSQSGRF 202
           +GSQ+GR 
Sbjct: 179 VGSQTGRV 186


>gi|387792847|ref|YP_006257912.1| NADH-quinone oxidoreductase subunit E [Solitalea canadensis DSM
           3403]
 gi|379655680|gb|AFD08736.1| NADH-quinone oxidoreductase, E subunit [Solitalea canadensis DSM
           3403]
          Length = 168

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 69/112 (61%), Gaps = 8/112 (7%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR 104
           + +F+ +  K+ + II+ YP G +++A++PLL LAQ + GW     M YVA FL++  + 
Sbjct: 6   EIKFSAEALKKVDEIIARYPEGRQKSALLPLLHLAQEEFGWCSTETMDYVASFLDINPIE 65

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VYEVA+FYTMF  KP G        +Y L  C T PC L  ++ I++ ++KK
Sbjct: 66  VYEVASFYTMFHLKPSG--------KYVLEVCRTGPCCLVGAEKIIDHLEKK 109


>gi|340055001|emb|CCC49309.1| putative NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma
           vivax Y486]
          Length = 268

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 77/130 (59%), Gaps = 10/130 (7%)

Query: 34  HRDTKDDNLDVKFEFTPDNKKRAE-AIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAM 91
           H +T  DN  + ++FT  + +     I+  +P    R+A+IPLL LAQ+Q G ++P++AM
Sbjct: 37  HHNTDTDNTRIPWDFTVRSYEEINNVILPKFPRSRRRSAIIPLLHLAQQQQGGYIPVTAM 96

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
           + +A    +P M+V+E  TFY+MF R+P+G        +YH+ +C TTPC L  SD ++ 
Sbjct: 97  YKIARICEVPPMQVFETVTFYSMFNRQPVG--------KYHIQFCVTTPCMLCGSDDLVH 148

Query: 152 VIKKKCNMML 161
             +   N+ +
Sbjct: 149 RTEAYLNVKM 158


>gi|386402560|ref|ZP_10087338.1| NADH-quinone oxidoreductase, E subunit [Bradyrhizobium sp. WSM1253]
 gi|385743186|gb|EIG63382.1| NADH-quinone oxidoreductase, E subunit [Bradyrhizobium sp. WSM1253]
          Length = 203

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 87/188 (46%), Gaps = 39/188 (20%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAM 91
           V R    +     F FT +N   A+  I+ YP G + +AVI +L   Q QH GW+  +A+
Sbjct: 3   VRRLAPKEVQPASFAFTEENLAFAKQQIAKYPAGRQASAVIAILWRVQEQHEGWVSEAAI 62

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
             VAD L++P +RV EVATFYTMF   P+G+       + H+  C TTPC LR ++ ++ 
Sbjct: 63  RAVADLLDMPYIRVLEVATFYTMFQLAPVGK-------KAHVQVCGTTPCRLRGAEDLIH 115

Query: 152 V-----------IKKKCNMMLER--------------------QDLEPKDMEQIIDDLKA 180
           V           + K  N   E                     +DL  +   +++D   +
Sbjct: 116 VCEHRIHHEPFHLSKDGNFSWEEVECLGACVNAPMVLIGKDTYEDLTKESFGKVLDGFAS 175

Query: 181 GKKPAPGP 188
           G  P PGP
Sbjct: 176 GNPPKPGP 183


>gi|58617181|ref|YP_196380.1| NADH dehydrogenase subunit E [Ehrlichia ruminantium str. Gardel]
 gi|58416793|emb|CAI27906.1| NADH-quinone oxidoreductase chain E [Ehrlichia ruminantium str.
           Gardel]
          Length = 183

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 73/116 (62%), Gaps = 9/116 (7%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWL-PISAMHYVADFLNLPKM 103
           +F+F  ++ K+A   ++ YP   + +AV+PLL +AQ+Q G L PI+AM+Y+ADFL++  +
Sbjct: 17  EFKFNKESLKQANDALNRYPSDRKSSAVMPLLHIAQKQCGGLIPIAAMNYIADFLDMKPI 76

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
            VYEVA FY+M+     G        +Y +  C TTPCWL  SD +L+  K+  N+
Sbjct: 77  HVYEVAKFYSMYNLSVTG--------KYLVQVCRTTPCWLCGSDNVLKACKEFLNI 124


>gi|418055566|ref|ZP_12693620.1| NADH-quinone oxidoreductase, E subunit [Hyphomicrobium
           denitrificans 1NES1]
 gi|353209844|gb|EHB75246.1| NADH-quinone oxidoreductase, E subunit [Hyphomicrobium
           denitrificans 1NES1]
          Length = 400

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 89/201 (44%), Gaps = 53/201 (26%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAM 91
           VH D   D     F F+ +N   A   I+ YP G + +AVIPLL  AQ Q G WLP  A+
Sbjct: 6   VHPDQPAD-----FTFSAENLAWARETIAKYPPGKQASAVIPLLWRAQEQSGGWLPEPAI 60

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
             V D L +  +R  E+ATFYTMF   P+G        + H+  C TTPC LR S  ++ 
Sbjct: 61  RAVCDLLGMAYIRGMEIATFYTMFQLSPVG-------TKAHVQVCGTTPCMLRGSRDLIA 113

Query: 152 VIKKKCN-----------MMLER--------------------QDLEPKDMEQIIDDLKA 180
           V + + N           +  E                     +DL P+  E+I+D   A
Sbjct: 114 VCQHRINEHPHTPNEDGTLSWEEVECIGVCANAPVAQIGKDTFEDLTPEQFEKILDGFVA 173

Query: 181 GKKPAPGPSGYTSGIGSQSGR 201
           GK P           GSQ+GR
Sbjct: 174 GKPPK---------WGSQTGR 185


>gi|407838154|gb|EKF99966.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma cruzi]
          Length = 261

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 78/130 (60%), Gaps = 10/130 (7%)

Query: 34  HRDTKDDNLDVKFEFT-PDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAM 91
           H++T  +N  + ++F+    ++   AI+  +P    R+AVIPLL LAQRQ G ++P++AM
Sbjct: 28  HQNTDTNNTRIPWDFSIASYEEINNAILPKFPRSRRRSAVIPLLHLAQRQQGGYIPVTAM 87

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
           + +A    +P M+V+E  TFY+MF R+P+G        +YH+ +C TTPC L   D ++ 
Sbjct: 88  YKIARICEVPPMQVFETVTFYSMFNRQPVG--------KYHIQFCVTTPCMLCGCDELVH 139

Query: 152 VIKKKCNMML 161
             +   N+ +
Sbjct: 140 RTEAYLNVKM 149


>gi|71409466|ref|XP_807078.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma cruzi
           strain CL Brener]
 gi|70870995|gb|EAN85227.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma cruzi]
          Length = 261

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 78/130 (60%), Gaps = 10/130 (7%)

Query: 34  HRDTKDDNLDVKFEFT-PDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAM 91
           H++T  +N  + ++F+    ++   AI+  +P    R+AVIPLL LAQRQ G ++P++AM
Sbjct: 28  HQNTDTNNTRIPWDFSIASYEEINNAILPKFPRSRRRSAVIPLLHLAQRQQGGYIPVTAM 87

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
           + +A    +P M+V+E  TFY+MF R+P+G        +YH+ +C TTPC L   D ++ 
Sbjct: 88  YKIARICEVPPMQVFETVTFYSMFNRQPVG--------KYHIQFCVTTPCMLCGCDELVH 139

Query: 152 VIKKKCNMML 161
             +   N+ +
Sbjct: 140 RTEAYLNVKM 149


>gi|338739717|ref|YP_004676679.1| NADH-quinone oxidoreductase subunit E [Hyphomicrobium sp. MC1]
 gi|337760280|emb|CCB66111.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           [Hyphomicrobium sp. MC1]
          Length = 413

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 65/116 (56%), Gaps = 8/116 (6%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMHYVADFLNLPK 102
            +F FT +N   A   I+ YP G + +A+IPL+  AQ Q  GWLP  A+  V D L +  
Sbjct: 12  AQFAFTAENLAWARETIAKYPEGKQASAIIPLMWRAQEQAGGWLPEPAIRLVCDMLGMAH 71

Query: 103 MRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN 158
           +R  E+ATFYTMF   P+G        + H+  C TTPC LR S  ++ V KK+ N
Sbjct: 72  IRGMEIATFYTMFQLSPVGS-------KAHIQVCGTTPCMLRGSGDLVSVCKKRIN 120


>gi|374575845|ref|ZP_09648941.1| NADH-quinone oxidoreductase, E subunit [Bradyrhizobium sp. WSM471]
 gi|374424166|gb|EHR03699.1| NADH-quinone oxidoreductase, E subunit [Bradyrhizobium sp. WSM471]
          Length = 203

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 87/188 (46%), Gaps = 39/188 (20%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAM 91
           V R    +     F FT +N   A+  I+ YP G + +AVI +L   Q QH GW+  +A+
Sbjct: 3   VRRLAPKEVQPASFAFTEENLAFAKQQIAKYPAGRQASAVIAILWRVQEQHDGWVSEAAI 62

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
             VAD L++P +RV EVATFYTMF   P+G+       + H+  C TTPC LR ++ ++ 
Sbjct: 63  RAVADMLDMPYIRVLEVATFYTMFQLAPVGK-------KAHVQVCGTTPCRLRGAEDLIH 115

Query: 152 V-----------IKKKCNMMLER--------------------QDLEPKDMEQIIDDLKA 180
           V           + K  N   E                     +DL  +   +++D   +
Sbjct: 116 VCEHRIHHEPFHLSKDGNFSWEEVECLGACVNAPMVLIGKDTYEDLTKESFGKVLDGFAS 175

Query: 181 GKKPAPGP 188
           G  P PGP
Sbjct: 176 GNPPKPGP 183


>gi|154335106|ref|XP_001563793.1| putative NADH-ubiquinone oxidoreductase,mitochondrial [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134060822|emb|CAM37838.1| putative NADH-ubiquinone oxidoreductase,mitochondrial [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 274

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 72/120 (60%), Gaps = 10/120 (8%)

Query: 34  HRDTKDDNLDVKFEFTPDN-KKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAM 91
           H +T  DN  + ++FT  + +K    I+  +P G   +A IPLL LAQ+Q G ++P++AM
Sbjct: 40  HHNTDYDNTRIPWDFTTASYEKIHHEILPKFPRGRRMSATIPLLHLAQQQQGGYIPVTAM 99

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
           + +A    +P M V+E  TFY+MF R P+G        +YH+ +C TTPC L  +D ++E
Sbjct: 100 YKIAKICEVPPMHVFETVTFYSMFNRHPVG--------KYHIQFCRTTPCMLCGADELIE 151


>gi|407399999|gb|EKF28500.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma cruzi marinkellei]
          Length = 261

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 78/130 (60%), Gaps = 10/130 (7%)

Query: 34  HRDTKDDNLDVKFEFTPDNKKRAE-AIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAM 91
           H++T  +N  + ++FT  + +    +I+  +P    ++AVIPLL LAQRQ G ++P++AM
Sbjct: 28  HQNTDTNNTRIPWDFTTASYEEINNSILPKFPRSRRKSAVIPLLHLAQRQQGGYIPVTAM 87

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
           + +A    +P M+V+E  TFY+MF R+P+G        +YH+ +C TTPC L   D ++ 
Sbjct: 88  YKIARICEVPPMQVFETVTFYSMFNRQPVG--------KYHIQFCVTTPCMLCGCDELVH 139

Query: 152 VIKKKCNMML 161
             +   N+ +
Sbjct: 140 RTEAYLNVKM 149


>gi|86749695|ref|YP_486191.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris HaA2]
 gi|86572723|gb|ABD07280.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris
           HaA2]
          Length = 249

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 86/175 (49%), Gaps = 39/175 (22%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMHYVADFLNLPKMR 104
           F FT +N   A+  I+ YP   + +AVI ++  AQ Q  GWLP +A+  ++D L +P +R
Sbjct: 16  FAFTEENLAWAKREITKYPPARQFSAVIAIMWRAQEQCGGWLPEAAIRVISDMLEMPHIR 75

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM----- 159
             EVATFYTMF   P+G+       + H+  C TTPC LR +  ++EV K + +      
Sbjct: 76  ALEVATFYTMFQLNPVGK-------KAHVQVCGTTPCRLRGAGELIEVCKSRIHHDPFHL 128

Query: 160 ---------------------MLE-----RQDLEPKDMEQIIDDLKAGKKPAPGP 188
                                M++      +DL P+ + +++D   AG  P PGP
Sbjct: 129 SADGDFSWEEVECAGACVNAPMVQIWKDTYEDLTPESLNKVLDGFAAGNPPKPGP 183


>gi|115524532|ref|YP_781443.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisA53]
 gi|115518479|gb|ABJ06463.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 249

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 39/177 (22%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMHYVADFLNLPKMR 104
           F FT +N   A   ++ YP G + +AVI ++  AQ Q  GW+  +A+  VAD L++P +R
Sbjct: 16  FAFTDENLAWAHQQVAKYPPGRQASAVIAIMWRAQEQLGGWISEAAIRAVADLLDMPHIR 75

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN------ 158
             E+ATFYTMF   P+G        + H+  C TTPC LR ++ I++V + + +      
Sbjct: 76  ALEIATFYTMFQLHPVGR-------KAHVQVCGTTPCRLRGAEDIIKVCQNRIHHDPSHL 128

Query: 159 ----------------------MMLER---QDLEPKDMEQIIDDLKAGKKPAPGPSG 190
                                 +M+ +   +DL P++  +++D + +G  P PGP G
Sbjct: 129 SADGNFSWEEVECLGACVNAPMVMIGKDTYEDLTPENFGKVLDGIGSGHPPKPGPQG 185


>gi|384218458|ref|YP_005609624.1| NADH-ubiquinone oxidoreductase subunit E [Bradyrhizobium japonicum
           USDA 6]
 gi|354957357|dbj|BAL10036.1| NADH-ubiquinone oxidoreductase chain E [Bradyrhizobium japonicum
           USDA 6]
          Length = 203

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 39/188 (20%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAM 91
           V R    +     F FT +N   A   I+ YP G + +AVI +L   Q QH GW+  +A+
Sbjct: 3   VRRLAPKEVQPASFAFTEENLAFARQQIAKYPAGRQASAVIAILWRVQEQHDGWVSEAAI 62

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
             VAD L++P +RV EVATFYTMF   P+G+       + H+  C TTPC LR ++ ++ 
Sbjct: 63  RAVADLLDMPYIRVLEVATFYTMFQLAPVGK-------KAHVQVCGTTPCRLRGAEDLIH 115

Query: 152 V-----------IKKKCNMMLER--------------------QDLEPKDMEQIIDDLKA 180
           V           + K  N   E                     +DL  +   +++D   +
Sbjct: 116 VCEHRIHHEPFHLSKDGNFSWEEVECLGACVNAPMVLIGKDTYEDLTKETFGKVLDGFAS 175

Query: 181 GKKPAPGP 188
           G  P PGP
Sbjct: 176 GNPPKPGP 183


>gi|398013388|ref|XP_003859886.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative [Leishmania
           donovani]
 gi|322498104|emb|CBZ33179.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative [Leishmania
           donovani]
          Length = 273

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 73/120 (60%), Gaps = 10/120 (8%)

Query: 34  HRDTKDDNLDVKFEFTPDN-KKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAM 91
           H++T  DN  + ++FT  + +K    I+  +P G   +A IPLL LAQ+Q G ++P++AM
Sbjct: 40  HQNTDYDNTRIPWDFTTASYEKIHNEILPKFPRGRRISATIPLLHLAQQQQGGYIPVTAM 99

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
           + +A    +P M V+E  TFY+MF R P+G        +YH+ +C TTPC L  +D ++E
Sbjct: 100 YKIAKICEVPPMHVFETVTFYSMFNRHPVG--------KYHIQFCRTTPCMLCGADELME 151


>gi|440226239|ref|YP_007333330.1| NADH-quinone oxidoreductase subunit e [Rhizobium tropici CIAT 899]
 gi|440037750|gb|AGB70784.1| NADH-quinone oxidoreductase subunit e [Rhizobium tropici CIAT 899]
          Length = 373

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 87/191 (45%), Gaps = 47/191 (24%)

Query: 56  AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMF 115
           AE  I  YP G +++A+IPL+  AQ Q GW+  +A+  +AD L++  +R  EVATFYT F
Sbjct: 26  AEKTIQKYPEGRQQSAIIPLMMRAQEQEGWVTKAAIETIADMLDMAYIRALEVATFYTQF 85

Query: 116 IRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN-MMLER----------- 163
              P+G        + H+  C TTPC LR +  +++V K + N    ER           
Sbjct: 86  QLHPVG-------TRAHVQVCGTTPCMLRGAGGLIKVCKSRINDHAFERNADGTLSWEEV 138

Query: 164 -------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQ 204
                              +DL P  +E+IID   AGK       G+    G Q  R   
Sbjct: 139 ECQGACVNAPMVVIGKDTYEDLTPTRLEEIIDAFAAGK-------GHEIQTGPQIDRVFS 191

Query: 205 AREAYHDMTSL 215
           A E    +TSL
Sbjct: 192 APEG--GLTSL 200


>gi|299135028|ref|ZP_07028219.1| NADH-quinone oxidoreductase, E subunit [Afipia sp. 1NLS2]
 gi|298590005|gb|EFI50209.1| NADH-quinone oxidoreductase, E subunit [Afipia sp. 1NLS2]
          Length = 212

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 39/175 (22%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMR 104
           F FT +N   A+  I+ YP G +++AVI +L  AQ Q+ GW+  +A+  VAD L +  +R
Sbjct: 16  FVFTDENLAWAKQQIAKYPEGRQQSAVIAILWRAQEQNEGWVSEAAIRAVADLLGMAHIR 75

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN------ 158
           V E+ATFYTMF   P+G+       + H+  C TTPC LR +  ++EV K + +      
Sbjct: 76  VMEIATFYTMFQLSPVGK-------KAHVQVCGTTPCMLRGAKDLVEVCKHRIHHDPFHV 128

Query: 159 ----------------------MMLER---QDLEPKDMEQIIDDLKAGKKPAPGP 188
                                 +M+ +   +DL P+ + +++D   +G  P PGP
Sbjct: 129 SADGDFSWEEVECLGACVNAPMVMIWKDTYEDLTPETLNKVLDGFASGNPPKPGP 183


>gi|146083233|ref|XP_001464685.1| putative NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania
           infantum JPCM5]
 gi|134068779|emb|CAM59713.1| putative NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania
           infantum JPCM5]
          Length = 273

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 73/120 (60%), Gaps = 10/120 (8%)

Query: 34  HRDTKDDNLDVKFEFTPDN-KKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAM 91
           H++T  DN  + ++FT  + +K    I+  +P G   +A IPLL LAQ+Q G ++P++AM
Sbjct: 40  HQNTDYDNTRIPWDFTTASYEKIHNEILPKFPRGRRISATIPLLHLAQQQQGGYIPVTAM 99

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
           + +A    +P M V+E  TFY+MF R P+G        +YH+ +C TTPC L  +D ++E
Sbjct: 100 YKIAKICEVPPMHVFETVTFYSMFNRHPVG--------KYHIQFCRTTPCMLCGADELME 151


>gi|72391928|ref|XP_846258.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma brucei
           TREU927]
 gi|62359878|gb|AAX80305.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma brucei]
 gi|70802794|gb|AAZ12699.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
 gi|261329869|emb|CBH12852.1| NADH-ubiquinone oxidoreductase, mitochondrial,putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 273

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 76/130 (58%), Gaps = 10/130 (7%)

Query: 34  HRDTKDDNLDVKFEFT-PDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAM 91
           H +T  +N  + ++FT    ++    I+  +P    R+A+IPLL LAQRQ G ++P++AM
Sbjct: 38  HHNTDTNNTRIPWDFTMASYEEINNVILPKFPRSRRRSAIIPLLHLAQRQQGGYIPVTAM 97

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
           + +A    +P M+V+E  TFY+MF R+P+G        +YH+ +C TTPC L   D ++ 
Sbjct: 98  YKIARICEVPPMQVFETVTFYSMFNRQPVG--------KYHIQFCVTTPCMLCGCDELVH 149

Query: 152 VIKKKCNMML 161
             +   N+ +
Sbjct: 150 RTEAYLNVKM 159


>gi|401418797|ref|XP_003873889.1| NADH-ubiquinone oxidoreductase, mitochondrial,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
 gi|322490122|emb|CBZ25383.1| NADH-ubiquinone oxidoreductase, mitochondrial,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 269

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 79/139 (56%), Gaps = 15/139 (10%)

Query: 20  LSTTQRLNHDALFVHRDTKD-----DNLDVKFEFTPDN-KKRAEAIISIYPVGHERAAVI 73
           LST   L  +A  VH + +      DN  + ++FT  + +K    I+  +P G   +A I
Sbjct: 21  LSTNAALLTNACAVHGEARHLNTDYDNTRIPWDFTTASYEKIHNEILPKFPRGRRISATI 80

Query: 74  PLLDLAQRQHG-WLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
           PLL LAQ+Q G ++P++AM+ +A    +P M V+E  TFY+MF R P+G        +YH
Sbjct: 81  PLLHLAQQQQGGYIPVTAMYKIAKICEVPPMHVFETVTFYSMFNRHPVG--------KYH 132

Query: 133 LNWCTTTPCWLRNSDAILE 151
           + +C TTPC L  +D ++E
Sbjct: 133 IQFCRTTPCMLCGADELME 151


>gi|83858410|ref|ZP_00951932.1| ATP synthase subunit E [Oceanicaulis sp. HTCC2633]
 gi|83853233|gb|EAP91085.1| ATP synthase subunit E [Oceanicaulis sp. HTCC2633]
          Length = 346

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 89/194 (45%), Gaps = 53/194 (27%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F F   ++ + +  ++ YP   + +AVIPLL +AQ+Q  W+   AM  +A    +P +RV
Sbjct: 14  FAFNEKSEAKVKFWLAKYPEERKASAVIPLLWIAQKQDNWVSEPAMREIAARCGMPYIRV 73

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMM----- 160
           YEVATFYTMF  +  G    K ++Q     C TTPCWLR +D +  V +KK         
Sbjct: 74  YEVATFYTMFNLEQTG----KHLIQV----CGTTPCWLRGADDLKAVCEKKIGKKGREHV 125

Query: 161 -------------------------------LERQDLEPKDMEQIIDDLKAGKKPAPGPS 189
                                          L  +DL  + +EQ++DDL+AGK+   GP 
Sbjct: 126 SSDGMLAWEEVECLGACANAPMVQISNTEGDLYYEDLTAEALEQMLDDLRAGKEVKAGPI 185

Query: 190 GYTSGIGSQSGRFC 203
                    SGR C
Sbjct: 186 ---------SGRSC 190


>gi|85717025|ref|ZP_01047987.1| ATP synthase subunit E [Nitrobacter sp. Nb-311A]
 gi|85696149|gb|EAQ34045.1| ATP synthase subunit E [Nitrobacter sp. Nb-311A]
          Length = 251

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 39/190 (20%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPIS 89
           + V R    +     F F+ +N   A+  I+ YP G + +A I +L  AQ QHG W+  +
Sbjct: 1   MSVRRLAPKEQQPESFAFSEENLAWAKKQIAQYPEGRQASAAIAILWRAQEQHGGWISEA 60

Query: 90  AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           A+  VAD L++P +R+ E+ATFYTMF  +P+G+       + H+  C TTPC LR ++ I
Sbjct: 61  AIRAVADMLDMPYIRMLEIATFYTMFQLQPVGK-------KAHIQVCGTTPCRLRGAEDI 113

Query: 150 LEVIKKKCN---------------------------MML----ERQDLEPKDMEQIIDDL 178
           L V K + +                           M+L      +DL  +   +++D  
Sbjct: 114 LAVCKSRIHHEPFHLSKDGDFSWEEVECLGSCVNAPMVLIWKDTYEDLTKESFGKVLDGF 173

Query: 179 KAGKKPAPGP 188
            +G  P PGP
Sbjct: 174 ASGNPPKPGP 183


>gi|374374839|ref|ZP_09632497.1| NADH dehydrogenase subunit E [Niabella soli DSM 19437]
 gi|373231679|gb|EHP51474.1| NADH dehydrogenase subunit E [Niabella soli DSM 19437]
          Length = 165

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 66/114 (57%), Gaps = 8/114 (7%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
            +F+ +   +   II+ YP G +++A++P+L LAQ   GWL    M YVA  L +  + V
Sbjct: 2   IQFSEEQLNKVSEIIARYPEGKQKSALLPVLHLAQDVFGWLSTETMDYVASLLKIEPIEV 61

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           YEVATFYTM+  KP+G        +Y    C T PC ++ SD I+  I++K ++
Sbjct: 62  YEVATFYTMYNLKPVG--------KYVFEVCQTGPCMIQGSDDIIAYIEEKLSI 107


>gi|325954438|ref|YP_004238098.1| NADH-quinone oxidoreductase subunit E [Weeksella virosa DSM 16922]
 gi|323437056|gb|ADX67520.1| NADH-quinone oxidoreductase, E subunit [Weeksella virosa DSM 16922]
          Length = 163

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 72/117 (61%), Gaps = 9/117 (7%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPK 102
           ++ +F+   ++R   I++ YP G +++A+IP+L +AQ + G WL +  + YVA  L+L  
Sbjct: 1   MEIQFSEATQQRINQIVARYPEGKQKSALIPVLHIAQEEFGGWLDVPHLDYVAKVLDLLP 60

Query: 103 MRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           + VYEVA+FYTMF   P+G        +Y L  C T PC ++ +D I++ IK K N+
Sbjct: 61  VEVYEVASFYTMFQLNPVG--------KYVLQVCQTGPCMIKGADHIIQHIKNKLNI 109


>gi|390449280|ref|ZP_10234889.1| NADH-quinone oxidoreductase subunit E [Nitratireductor aquibiodomus
           RA22]
 gi|389664385|gb|EIM75880.1| NADH-quinone oxidoreductase subunit E [Nitratireductor aquibiodomus
           RA22]
          Length = 144

 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 7/113 (6%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F F+       +  +  YP   +++AVIPLL LAQ Q GW+  +A+ +VA+ L++P +RV
Sbjct: 16  FAFSRAMNGEVKRWLGKYPKDRKQSAVIPLLMLAQEQEGWVTRAAIEHVAEMLDMPLIRV 75

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN 158
            EVATFYT F   P+G        + H+  C TTPC LR S  ++++ KKK N
Sbjct: 76  LEVATFYTQFQLAPVG-------TRAHIQVCGTTPCMLRGSGELIDLCKKKIN 121


>gi|57239171|ref|YP_180307.1| NADH dehydrogenase subunit E [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579127|ref|YP_197339.1| NADH dehydrogenase subunit E [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161250|emb|CAH58169.1| NADH-quinone oxidoreductase chain E [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417753|emb|CAI26957.1| NADH-quinone oxidoreductase chain E [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 183

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 73/116 (62%), Gaps = 9/116 (7%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWL-PISAMHYVADFLNLPKM 103
           +F+F  ++ K+A   ++ YP   + +AV+PLL +AQ+Q G L PI+AM+Y+ADFL++  +
Sbjct: 17  EFKFNKESLKQANDALNRYPSDRKSSAVMPLLHIAQKQCGGLIPIAAMNYIADFLDMKPI 76

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
            VYEVA FY+M+     G        +Y +  C TTPCWL  S+ +L+  K+  N+
Sbjct: 77  HVYEVAKFYSMYNLSVTG--------KYLVQVCRTTPCWLCGSENVLKACKEFLNI 124


>gi|342182232|emb|CCC91711.1| putative NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma
           congolense IL3000]
          Length = 243

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 76/130 (58%), Gaps = 10/130 (7%)

Query: 34  HRDTKDDNLDVKFEFTPDNKKRAE-AIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAM 91
           H +T  +N  + ++FT  + +     I+  +P    ++A+IPLL LAQRQ G ++P++AM
Sbjct: 37  HHNTDTNNTRIPWDFTTASYEEINNVILPKFPRSRRKSAIIPLLHLAQRQQGGYIPVTAM 96

Query: 92  HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
           + +A    +P M+V+E  TFY+MF R+P+G        +YH+ +C TTPC L   D ++ 
Sbjct: 97  YKIARICEVPPMQVFETVTFYSMFNRQPVG--------KYHIQFCVTTPCMLCGCDDLVH 148

Query: 152 VIKKKCNMML 161
             +   N+ +
Sbjct: 149 RTEAYLNVKM 158


>gi|255037831|ref|YP_003088452.1| NADH-quinone oxidoreductase subunit E [Dyadobacter fermentans DSM
           18053]
 gi|254950587|gb|ACT95287.1| NADH-quinone oxidoreductase, E subunit [Dyadobacter fermentans DSM
           18053]
          Length = 165

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 8/112 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
           FTP+  +  + II+ YP G +++A++P+L +AQ Q GWL    M YVA  LN+  + VYE
Sbjct: 10  FTPERLETVKEIIARYPEGRQKSALLPVLHVAQEQWGWLSSEVMDYVAGILNIEPVEVYE 69

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           VATFYTM+   P+G    K +++Y    C T PC L   + +   +KKK  +
Sbjct: 70  VATFYTMYHLDPVG----KHVIEY----CRTGPCCLMGGEDVYGHLKKKLGI 113


>gi|75676074|ref|YP_318495.1| NADH dehydrogenase subunit E [Nitrobacter winogradskyi Nb-255]
 gi|74420944|gb|ABA05143.1| NADH dehydrogenase subunit E [Nitrobacter winogradskyi Nb-255]
          Length = 250

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 39/190 (20%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPIS 89
           + V R    +     F F+ +N   A+  I+ YP G + +A I +L  AQ Q+G W+  +
Sbjct: 1   MSVRRLAPKEQQPESFAFSEENLAWAKKQIAQYPAGRQASAAIAILWRAQEQNGGWISEA 60

Query: 90  AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           A+  VAD L++P +R+ E+ATFYTMF  +P+G        + H+  C TTPC LR ++ I
Sbjct: 61  AIRTVADMLDMPYIRMLEIATFYTMFQLQPVGR-------KAHIQVCGTTPCRLRGAEDI 113

Query: 150 LEVIKKKCN---------------------------MML----ERQDLEPKDMEQIIDDL 178
           L V K + +                           M+L      +DL  ++  +++D  
Sbjct: 114 LAVCKSRIHHEPFHLSKDGDFSWEEVECLGSCVNAPMVLIWKDTYEDLTKENFGKVLDGF 173

Query: 179 KAGKKPAPGP 188
            +G+ P PGP
Sbjct: 174 ASGQPPKPGP 183


>gi|88607823|ref|YP_505311.1| NADH dehydrogenase subunit E [Anaplasma phagocytophilum HZ]
 gi|88598886|gb|ABD44356.1| NADH dehydrogenase I, E subunit [Anaplasma phagocytophilum HZ]
          Length = 171

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 65/111 (58%), Gaps = 9/111 (8%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMR 104
           F FT  N + A   IS YP G + +AV+PLL L Q+Q  G++P SA+ Y+A  L++  + 
Sbjct: 9   FRFTDGNLEEAYKCISRYPEGRQASAVMPLLHLVQQQAGGFVPRSAIEYIAKLLSMRPVH 68

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
           V EV  FY+M+   P+G        +Y +  C TTPCWLR SD +L   K+
Sbjct: 69  VREVVEFYSMYNTAPVG--------KYLVQVCKTTPCWLRRSDDVLNACKR 111


>gi|209885056|ref|YP_002288913.1| NADH dehydrogenase subunit E [Oligotropha carboxidovorans OM5]
 gi|337741314|ref|YP_004633042.1| NADH-quinone oxidoreductase subunit E 1 [Oligotropha
           carboxidovorans OM5]
 gi|386030330|ref|YP_005951105.1| NADH-quinone oxidoreductase subunit E 1 [Oligotropha
           carboxidovorans OM4]
 gi|209873252|gb|ACI93048.1| NADH-quinone oxidoreductase subunit e 1 [Oligotropha
           carboxidovorans OM5]
 gi|336095398|gb|AEI03224.1| NADH-quinone oxidoreductase subunit E 1 [Oligotropha
           carboxidovorans OM4]
 gi|336098978|gb|AEI06801.1| NADH-quinone oxidoreductase subunit E 1 [Oligotropha
           carboxidovorans OM5]
          Length = 250

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 88/175 (50%), Gaps = 39/175 (22%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMR 104
           F FT +N   A+  I  +P G +++AVIP+L   Q Q+ GW+  +A+  VAD L +  +R
Sbjct: 16  FVFTDENLAWAKQQIEKFPPGRQQSAVIPILWRVQEQNEGWVSEAAIRAVADLLGMAHIR 75

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN------ 158
           V E+ATFYTMF   P+G+       + H+  C TTPC LR +  ++EV K + +      
Sbjct: 76  VLEIATFYTMFQLSPVGK-------KAHVQVCGTTPCMLRGAKDLVEVCKHRIHHDPGHV 128

Query: 159 ----------------------MMLER---QDLEPKDMEQIIDDLKAGKKPAPGP 188
                                 +M+ +   +DL P+ + +++D   +G  P PGP
Sbjct: 129 SEDGDFSWEEVECLGACVNAPMVMIWKDTYEDLTPETLNKVLDGFASGNPPKPGP 183


>gi|389691122|ref|ZP_10180015.1| NADH-quinone oxidoreductase, E subunit [Microvirga sp. WSM3557]
 gi|388589365|gb|EIM29654.1| NADH-quinone oxidoreductase, E subunit [Microvirga sp. WSM3557]
          Length = 351

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 96/209 (45%), Gaps = 44/209 (21%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMHYVADFLNLPKMR 104
           F  + + +  AE  I+ YP G + +AVI LL  AQ Q  GWLP  A+  VA  L++P +R
Sbjct: 16  FVLSAETEAFAEKEIAKYPPGRQASAVIALLTKAQDQAGGWLPRKAIEAVAARLDMPVIR 75

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN------ 158
           V EVATFYTMF  +P+G        +Y + +C TTPC LR +  I +V++++        
Sbjct: 76  VMEVATFYTMFNLEPVG--------KYFIQFCGTTPCVLRGAGDIRKVLERRVGDQNHVT 127

Query: 159 -------MMLE-----------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                  + +E                  +DL  ++ E+++DDL AG+     P    S 
Sbjct: 128 ADGTFSWLEVECLGACSNAPMVQINDDYYEDLTTENFEKLLDDLAAGR-----PVKVGSQ 182

Query: 195 IGSQSGRFCQAREAYHDMTSLTGEPHGPW 223
           IG       +A     D     G   G W
Sbjct: 183 IGRNRSEPFEAVNTLQDPALYDGSVVGAW 211


>gi|73667051|ref|YP_303067.1| NADH dehydrogenase subunit E [Ehrlichia canis str. Jake]
 gi|72394192|gb|AAZ68469.1| NADH dehydrogenase subunit E [Ehrlichia canis str. Jake]
          Length = 180

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 72/116 (62%), Gaps = 9/116 (7%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMHYVADFLNLPKM 103
           +F+F+ +N K A+  I+ YP   + +AV+ LL +AQ+Q  G++P SA++Y+ADFL +  +
Sbjct: 15  EFKFSKENLKHAKDTINKYPQDRKSSAVMALLHIAQKQCGGFIPSSAINYIADFLGMQLI 74

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
            VYEVA FY+M+     G        +Y +  C TTPCWL  SD +L+  K+  N+
Sbjct: 75  HVYEVAKFYSMYNLSVTG--------KYLVQVCRTTPCWLCGSDDVLKSCKELLNI 122


>gi|114569909|ref|YP_756589.1| NADH dehydrogenase subunit E [Maricaulis maris MCS10]
 gi|114340371|gb|ABI65651.1| NADH dehydrogenase subunit E [Maricaulis maris MCS10]
          Length = 221

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 84/177 (47%), Gaps = 42/177 (23%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F F   ++   +  ++ YP   + +AVIP+L +AQ+Q GW+   A+  +A  L +P +RV
Sbjct: 14  FAFNKKSEAEIKFWLAKYPEAKKASAVIPMLWIAQKQEGWVSEPAIRDIAGRLEMPYIRV 73

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLE--- 162
           YEVATFYTMF  +P+G   I+         C TTPC LR S  +++V KK+     E   
Sbjct: 74  YEVATFYTMFNLEPVGTHLIQV--------CGTTPCMLRGSGELIDVCKKRIGKQHEISA 125

Query: 163 -------------------------------RQDLEPKDMEQIIDDLKAGKKPAPGP 188
                                           +DL+   +E ++DDL AGK+   GP
Sbjct: 126 DGKFTWIEVECMGACANAPMIQLANPDGDHYVEDLDGAKLEALMDDLAAGKQIKYGP 182


>gi|90423907|ref|YP_532277.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisB18]
 gi|90105921|gb|ABD87958.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 265

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 48/206 (23%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMHYVADFLNLPKMR 104
           F FT +N   A+  I+ YP G + +AVI ++  A  Q  GW+  +A+  VAD L +P +R
Sbjct: 30  FAFTEENLAWAQREIAKYPPGRQASAVIAIMWRAHEQLGGWITEAAIRAVADLLQMPHIR 89

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN------ 158
             E+ATFYTMF  +P+G+       + H+  C TTPC LR ++ I++V K + +      
Sbjct: 90  ALEIATFYTMFQLQPVGK-------KAHVQVCGTTPCRLRGAEDIIKVCKNRIHHEPFHL 142

Query: 159 ----------------------MMLER---QDLEPKDMEQIIDDLKAGKKPAPGPSGYTS 193
                                 +M+ +   +DL P+   +++D   +G  P PGP     
Sbjct: 143 SADGNFSWEEVECLGSCVNAPMVMITKDTYEDLTPESFGKVLDGFASGNFPTPGP----- 197

Query: 194 GIGSQSGRFCQAREAYHDMTSLTGEP 219
               Q+GR   A E    +    G P
Sbjct: 198 ----QNGRQFAAPEGGPRVLKSVGAP 219


>gi|312796897|ref|YP_004029819.1| NADH-quinone oxidoreductase subunit E [Burkholderia rhizoxinica HKI
           454]
 gi|312168672|emb|CBW75675.1| NADH-quinone oxidoreductase chain E (EC 1.6.5.3) [Burkholderia
           rhizoxinica HKI 454]
          Length = 165

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 62/109 (56%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +  K  +  ++ YP GH+++AV+  L +AQR+ GWL    M +VAD+L +P + V E
Sbjct: 9   ISAEGLKEIDRAVAKYPAGHQQSAVMAALAIAQREQGWLSPELMQFVADYLKMPAIAVQE 68

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFYTM+   P+G        Q+ +  CT  PC L  +    E +K+K
Sbjct: 69  VATFYTMYETAPVG--------QHKITLCTNLPCQLSGAQQTAEYLKQK 109


>gi|393766077|ref|ZP_10354634.1| NADH-quinone oxidoreductase subunit E [Methylobacterium sp. GXF4]
 gi|392728450|gb|EIZ85758.1| NADH-quinone oxidoreductase subunit E [Methylobacterium sp. GXF4]
          Length = 453

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 48/187 (25%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
           F F+P+N + A+  I+ YP G + +AVI LL  AQ Q+G WLP +A+  VA  L +P +R
Sbjct: 16  FAFSPENAEWAKTQIAKYPEGRQASAVISLLWKAQEQNGGWLPRAAIEAVAAELGMPNIR 75

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK-------- 156
           V EVATFYTMF  +P+G        ++ +  C T PC    +  + E+++ +        
Sbjct: 76  VLEVATFYTMFALEPVG--------RFWIQVCGTVPCDSCGARGLKEMLEARLGPPGHVS 127

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                           CN  + +      +DL P+ +  ++DDL AG+            
Sbjct: 128 PDGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLGTLMDDLAAGRP---------VK 178

Query: 195 IGSQSGR 201
           +GSQ+GR
Sbjct: 179 VGSQTGR 185


>gi|315122722|ref|YP_004063211.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496124|gb|ADR52723.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 203

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 40/191 (20%)

Query: 31  LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
           + + R   ++     F F+ +N   A  ++S YP    ++AVIPLL   Q Q GW+  +A
Sbjct: 1   MSIRRLAAEEFQPSSFSFSEENIVWANEVMSKYPSSRYQSAVIPLLMRVQEQEGWVSRAA 60

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           + +VA  L++  +RV E+ TFYT F   P+G          H+  C TTPC LR  + ++
Sbjct: 61  IEFVAGMLDMAYIRVLEIVTFYTQFQLAPVG-------THAHVQVCGTTPCMLRGCEDLI 113

Query: 151 EVIKKKCN----------------------------MMLER---QDLEPKDMEQIIDDLK 179
           EV + K +                            +M+ +   +DL P+ +E+II+   
Sbjct: 114 EVCRNKIHQKPLHRNPEGKLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIEAFS 173

Query: 180 AGKKPA--PGP 188
           AG+  +  PGP
Sbjct: 174 AGRGDSIRPGP 184


>gi|146278040|ref|YP_001168199.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides ATCC 17025]
 gi|145556281|gb|ABP70894.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 303

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 92/202 (45%), Gaps = 49/202 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FT  N + A   IS YP G + +A+IPLL  AQ Q GWL   A+ +VAD L + ++R 
Sbjct: 13  FAFTSANLEWARGQISKYPEGRQASAIIPLLWRAQEQEGWLTKPAIEHVADMLGMARIRA 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVATFY MF  +P+G  R+      H+  C TT C +  ++ ++ V ++K         
Sbjct: 73  LEVATFYFMFQLQPVG--RVA-----HIQICGTTSCLICGAEELIRVCREKIAPQPHMLS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  + +  +ID   AG  P P        
Sbjct: 126 ADGRFSWEEVECLGACANAPMAQIGKDYYEDLNAETLAALIDRFSAGDVPRP-------- 177

Query: 195 IGSQSGRFCQAREAYHDMTSLT 216
            GSQ GRF  + E     TSLT
Sbjct: 178 -GSQIGRF--SSEPAGGATSLT 196


>gi|254459862|ref|ZP_05073278.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e
           [Rhodobacterales bacterium HTCC2083]
 gi|206676451|gb|EDZ40938.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 384

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 93/201 (46%), Gaps = 52/201 (25%)

Query: 33  VHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMH 92
           +H+D  D      F FT  N+  AEA I+ YP G + +A+IPLL  AQ Q GWL   A+ 
Sbjct: 5   LHKDQPDS-----FAFTLANQAWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59

Query: 93  YVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV 152
           +V+D L L  +R  EVA+FY MF  +P+G          H+  C T  C +  ++ ++ V
Sbjct: 60  HVSDMLGLAYIRGLEVASFYFMFQLQPVGS-------VAHIQICGTLSCMICGAEDLVAV 112

Query: 153 IKKK-------------------------CNMMLER------QDLEPKDMEQIIDDLKAG 181
            ++K                          N  + +      +DL  + + +++DD+ AG
Sbjct: 113 CREKISNKPHVISADGKFSWEEVECLGACTNAPMAQIGKDYYEDLTTEGLVKLLDDMAAG 172

Query: 182 KKPAPGPSGYTSGIGSQSGRF 202
             P PGP         Q+GR+
Sbjct: 173 SVPTPGP---------QNGRY 184


>gi|384918712|ref|ZP_10018781.1| NADH dehydrogenase subunit E [Citreicella sp. 357]
 gi|384467425|gb|EIE51901.1| NADH dehydrogenase subunit E [Citreicella sp. 357]
          Length = 285

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 83/188 (44%), Gaps = 47/188 (25%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FT  N   AE  IS YP G + +AVIPLL  AQ Q GWL   A+  V + L L  +RV
Sbjct: 13  FAFTDANLAWAEGQISKYPEGRQASAVIPLLWRAQEQEGWLSQRAIETVGEMLGLAYIRV 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVATFY MF   P+G          H+  C TT C +  ++ ++ V K K         
Sbjct: 73  LEVATFYFMFQLAPVGS-------VAHVQICGTTTCMICGAEDLMAVCKDKIAPNAHMVS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  + +  I+D+L AG  P P        
Sbjct: 126 ADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTAEKLAGILDELAAGTVPVP-------- 177

Query: 195 IGSQSGRF 202
            GSQ+GR+
Sbjct: 178 -GSQNGRY 184


>gi|300023449|ref|YP_003756060.1| NADH-quinone oxidoreductase subunit E [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525270|gb|ADJ23739.1| NADH-quinone oxidoreductase, E subunit [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 388

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 85/190 (44%), Gaps = 48/190 (25%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPK 102
            +F F+ +N   A+  I+ YP G + +A+IPLL  AQ Q G WLP  A+  V D L +  
Sbjct: 12  AEFAFSAENLAWAQETIAKYPSGKQASAIIPLLWRAQEQSGGWLPEPAIRAVCDLLGMAH 71

Query: 103 MRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLR------------------ 144
           +R  EVATFYTMF   P+G        + H+  C TTPC LR                  
Sbjct: 72  IRGMEVATFYTMFQLSPVG-------TKAHVQVCGTTPCMLRGSRDLISVCQHRIHEHPH 124

Query: 145 --NSDAILEVIKKKCNMMLER-----------QDLEPKDMEQIIDDLKAGKKPAPGPSGY 191
             NSD  L   + +C  +              +DL  +  E+++D   AGK   P     
Sbjct: 125 TPNSDGTLSWEEVECIGVCANAPVVQIGKDTYEDLTAEQFEKVLDGFIAGKPLKP----- 179

Query: 192 TSGIGSQSGR 201
               GSQ+GR
Sbjct: 180 ----GSQTGR 185


>gi|89053667|ref|YP_509118.1| NADH dehydrogenase subunit E [Jannaschia sp. CCS1]
 gi|88863216|gb|ABD54093.1| NADH dehydrogenase subunit E [Jannaschia sp. CCS1]
          Length = 395

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 90/202 (44%), Gaps = 49/202 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FT DN+  AEA I+ YP G   +A+IPLL  AQ Q GWL   A+  VAD L L  +R 
Sbjct: 13  FAFTSDNQAWAEAQITKYPEGRAASAIIPLLWRAQEQEGWLTRPAIEGVADMLGLAHIRA 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVATFY MF  +P+G          H+  C T  C +  ++ ++ V ++K         
Sbjct: 73  LEVATFYFMFQLQPVG-------AVAHIQICGTLSCMICGAEDLVAVAREKIAANPHQIS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  +    IID +  G+ P PGP      
Sbjct: 126 ADGKFSWEEVECLGACSNAPMAQIGKDYYEDLTAESFAGIIDAMARGEVPTPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSLT 216
              Q+ R+  A E    +TSLT
Sbjct: 180 ---QTERY--ASEPAGGLTSLT 196


>gi|395214927|ref|ZP_10400767.1| NADH dehydrogenase subunit e [Pontibacter sp. BAB1700]
 gi|394456045|gb|EJF10411.1| NADH dehydrogenase subunit e [Pontibacter sp. BAB1700]
          Length = 175

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 69/115 (60%), Gaps = 9/115 (7%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMR 104
           F+F+       +  IS YP G +++A++P L +AQ ++ GW+   AM  +A+ LN+  + 
Sbjct: 6   FKFSDKALAEIQRYISHYPEGRQKSALLPALHVAQAENNGWVSPEAMDAIAEILNIQPIE 65

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           VYEVATFYTMF  KP+G        ++ L  C T PC LR +D ++E  K+K N+
Sbjct: 66  VYEVATFYTMFNLKPVG--------KHVLEVCRTGPCCLRGADQMIETFKQKLNI 112


>gi|407798871|ref|ZP_11145774.1| NADH dehydrogenase subunit E [Oceaniovalibus guishaninsula JLT2003]
 gi|407059219|gb|EKE45152.1| NADH dehydrogenase subunit E [Oceaniovalibus guishaninsula JLT2003]
          Length = 343

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 91/204 (44%), Gaps = 49/204 (24%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
             F FTP N   A A ++ YP G + +AVIPLL  AQ Q GWL   A+  V   L++  +
Sbjct: 11  ASFAFTPANLDWARAQMTKYPDGRQASAVIPLLWRAQEQEGWLSRPAIEEVGRMLDMAYI 70

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK------- 156
           RV EVATFY MF  +P+G          H+  C TT C +  ++ ++ V ++K       
Sbjct: 71  RVLEVATFYFMFQLQPVGS-------VAHVQICGTTSCMICGAEDLIAVCREKIAPKAHQ 123

Query: 157 ------------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYT 192
                              N  + +      +DL    +  ++D L AG+ P PGP    
Sbjct: 124 LSADGRFSWEEVECLGACANAPMAQIGKDYYEDLTADSLGALLDRLAAGEVPRPGP---- 179

Query: 193 SGIGSQSGRFCQAREAYHDMTSLT 216
                Q+GRF  A E     TSLT
Sbjct: 180 -----QAGRF--ASEPAEGRTSLT 196


>gi|84516735|ref|ZP_01004093.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Loktanella
           vestfoldensis SKA53]
 gi|84509203|gb|EAQ05662.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Loktanella
           vestfoldensis SKA53]
          Length = 309

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 91/201 (45%), Gaps = 49/201 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F FT  N   AEA +  +P G + +A+IP+L  AQ Q GWL   A+ YVA  L++  MR 
Sbjct: 13  FAFTDANLAWAEAQMKKFPEGRQASAIIPILWRAQEQEGWLTRPAIEYVAKMLDMAYMRA 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVA+FY MF  +P+G          H+  C T  C +  ++ ++ V K K         
Sbjct: 73  LEVASFYFMFQLQPVGS-------VAHIQVCGTLSCMICGAEDLIGVCKDKIAPKAHSLS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL    + +IID+L AG+ P PGP      
Sbjct: 126 ADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTAARLTEIIDELAAGRVPTPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSL 215
              Q+GRF  A E    +T+L
Sbjct: 180 ---QNGRF--AAEPKGGLTTL 195


>gi|260574762|ref|ZP_05842765.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sp. SW2]
 gi|259023179|gb|EEW26472.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sp. SW2]
          Length = 254

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 93/203 (45%), Gaps = 49/203 (24%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
             F FTP N+  AE  +S YP G + +A+IPLL  AQ Q GWL   A+ +VAD L +  +
Sbjct: 11  ASFAFTPANQAWAEGQVSKYPAGRQASAIIPLLWRAQEQEGWLSRPAIEHVADMLGMAYI 70

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK-------- 155
           R  EVATFY MF  +P+G     S+    +  C TT C +  ++ ++ V ++        
Sbjct: 71  RALEVATFYFMFQLQPVG-----SVANIQI--CGTTSCLICGAEDLIAVCRELIADKPHT 123

Query: 156 ------------KC-----NMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYT 192
                       +C     N  + +      +DL  + +  +I     G+ P PGP    
Sbjct: 124 LSADGKFSWEEVECLGACTNAPMAQIGKDYYEDLNAERLRALIARFSNGEVPVPGP---- 179

Query: 193 SGIGSQSGRFCQAREAYHDMTSL 215
                Q+GR+  A E    +TSL
Sbjct: 180 -----QNGRY--ASEPLAGLTSL 195


>gi|161831261|ref|YP_001597289.1| NADH dehydrogenase (ubiquinone) subunit E [Coxiella burnetii RSA
           331]
 gi|161763128|gb|ABX78770.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA
           331]
          Length = 174

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 64/98 (65%), Gaps = 9/98 (9%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118
           ++ YP   +R+AV+P L   Q+Q+ GWL  +AM+ +AD+L LP++ VYEVATFY M+  K
Sbjct: 22  LAKYPADQKRSAVVPALLFVQKQNNGWLSKAAMNALADYLQLPRIWVYEVATFYDMYNLK 81

Query: 119 PIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           P+G+ +I        + C   PC+LR SD I+  +K++
Sbjct: 82  PMGKHKI--------SICQNVPCFLRGSDEIVACVKER 111


>gi|153207217|ref|ZP_01945981.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|154706802|ref|YP_001423960.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii Dugway
           5J108-111]
 gi|165918775|ref|ZP_02218861.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii Q321]
 gi|212212186|ref|YP_002303122.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii CbuG_Q212]
 gi|212218216|ref|YP_002305003.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii CbuK_Q154]
 gi|120576705|gb|EAX33329.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|154356088|gb|ABS77550.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii Dugway
           5J108-111]
 gi|165917499|gb|EDR36103.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii Q321]
 gi|212010596|gb|ACJ17977.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii CbuG_Q212]
 gi|212012478|gb|ACJ19858.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii CbuK_Q154]
          Length = 174

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 64/98 (65%), Gaps = 9/98 (9%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118
           ++ YP   +R+AV+P L   Q+Q+ GWL  +AM+ +AD+L LP++ VYEVATFY M+  K
Sbjct: 22  LAKYPTDQKRSAVVPALLFVQKQNNGWLSKAAMNALADYLQLPRIWVYEVATFYDMYNLK 81

Query: 119 PIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           P+G+ +I        + C   PC+LR SD I+  +K++
Sbjct: 82  PMGKHKI--------SICQNVPCFLRGSDEIVACVKER 111


>gi|29654735|ref|NP_820427.1| NADH dehydrogenase subunit E [Coxiella burnetii RSA 493]
 gi|29542003|gb|AAO90941.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii RSA 493]
          Length = 174

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 64/98 (65%), Gaps = 9/98 (9%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118
           ++ YP   +R+AV+P L   Q+Q+ GWL  +AM+ +AD+L LP++ VYEVATFY M+  K
Sbjct: 22  LAKYPTDQKRSAVVPALLFVQKQNNGWLSKAAMNALADYLQLPRIWVYEVATFYDMYNLK 81

Query: 119 PIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           P+G+ +I        + C   PC+LR SD I+  +K++
Sbjct: 82  PMGKHKI--------SICQNVPCFLRGSDEIVACVKER 111


>gi|409099760|ref|ZP_11219784.1| NADH dehydrogenase subunit E [Pedobacter agri PB92]
          Length = 170

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 67/113 (59%), Gaps = 8/113 (7%)

Query: 47  EFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106
           +F+ +   + + + S YP G  ++A++PLL L Q +  W+P SAM  VA++LN+  + VY
Sbjct: 11  QFSSELLAKFDEVKSRYPEGKHKSALLPLLHLVQAEFLWVPTSAMDQVAEYLNIQPIEVY 70

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           EVATFYTM+  KP G        +Y L  C T PC L  ++ IL+ ++ K  +
Sbjct: 71  EVATFYTMYFLKPQG--------KYALEVCRTGPCCLVGAEKILDHLENKLGV 115


>gi|406897321|gb|EKD41313.1| NADH-quinone oxidoreductase, E subunit [uncultured bacterium]
          Length = 157

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 68/110 (61%), Gaps = 10/110 (9%)

Query: 47  EFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106
           EF  +N+K+ E +++ YP   ++AA++P L LAQ Q G+L +  +  +A  L+L  + VY
Sbjct: 4   EFNTENQKKFEEVLTHYPT--KQAAILPTLWLAQEQFGYLSMETLEMIAAKLDLAPVHVY 61

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
            VA+FYTMF  KP+G        +YH+  C T  C L  S+++L+ +KKK
Sbjct: 62  SVASFYTMFNLKPVG--------KYHIQLCRTLSCALLGSESLLDHVKKK 103


>gi|86739255|ref|YP_479655.1| NADH dehydrogenase subunit E [Frankia sp. CcI3]
 gi|86566117|gb|ABD09926.1| NADH dehydrogenase subunit E [Frankia sp. CcI3]
          Length = 262

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 39/170 (22%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
           F+P+    A+ II+ YP G  R+A++PLL L Q + G +    + + AD L + +  V  
Sbjct: 3   FSPETHAAAQEIIARYPAGRSRSALLPLLHLVQAEQGCVTAQGVAFCADVLGITRAEVGA 62

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK-----------K 156
           VATFYTM+ R P+G+        Y ++ CT   C L   + + E + K            
Sbjct: 63  VATFYTMYKRHPVGD--------YLVSVCTNLSCALLGGEDVYERVSKLLGVGHDETTPD 114

Query: 157 CNMMLERQD--------------------LEPKDMEQIIDDLKAGKKPAP 186
            ++ LE  +                    ++P   + I++DL+AG++PAP
Sbjct: 115 GSITLEHAECLAACDYAPVMTVNYEFYDQVDPDSAQAIVEDLRAGRRPAP 164


>gi|126729554|ref|ZP_01745367.1| ATP synthase subunit E [Sagittula stellata E-37]
 gi|126709673|gb|EBA08726.1| ATP synthase subunit E [Sagittula stellata E-37]
          Length = 242

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 90/202 (44%), Gaps = 49/202 (24%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           FEFT  N   A+  I+ YP G + +A+IPLL  AQ Q GWL   A+ YV++ L +  +R 
Sbjct: 13  FEFTEANLAWAKEQITKYPAGRQASAIIPLLWRAQEQEGWLTRPAIEYVSEMLGMAYIRG 72

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK--------- 156
            EVATFY MF  +P G          H+  C TT C +  ++ ++ V + K         
Sbjct: 73  LEVATFYFMFQLQPTGS-------VAHIQICGTTSCMICGAEDLMAVCRDKISAKPHTLS 125

Query: 157 ----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                            N  + +      +DL  + +  ++D L  G+ P PGP      
Sbjct: 126 EDGRFSWEEVECLGACTNAPMAQIGKDYYEDLTAEKLGALLDALDKGEVPQPGP------ 179

Query: 195 IGSQSGRFCQAREAYHDMTSLT 216
              Q+GRF  A E     T+LT
Sbjct: 180 ---QNGRF--ASEPLGGATTLT 196


>gi|421598886|ref|ZP_16042213.1| NADH dehydrogenase subunit E, partial [Bradyrhizobium sp.
           CCGE-LA001]
 gi|404269006|gb|EJZ33359.1| NADH dehydrogenase subunit E, partial [Bradyrhizobium sp.
           CCGE-LA001]
          Length = 179

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 78/161 (48%), Gaps = 39/161 (24%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118
           I+ YP G + +AVI +L  AQ QH GW+  +A+  +AD L++P +RV EVATFYTMF   
Sbjct: 6   IAKYPAGRQASAVIAILWRAQEQHDGWVSEAAIRVIADMLDMPYIRVLEVATFYTMFQLA 65

Query: 119 PIGEERIKSILQYHLNWCTTTPCWLRNSDAILEV-----------IKKKCNMMLER---- 163
           P+G+       + H+  C TTPC LR ++ ++ V           + K  N   E     
Sbjct: 66  PVGK-------KAHVQVCGTTPCRLRGAEDLIHVCEHRIHHEPFHLSKDGNFSWEEVECL 118

Query: 164 ----------------QDLEPKDMEQIIDDLKAGKKPAPGP 188
                           +DL  +   +++D   +G  P PGP
Sbjct: 119 GACVNAPMVLIGKDTYEDLTKESFGKVLDGFASGNPPKPGP 159


>gi|114330929|ref|YP_747151.1| NADH dehydrogenase subunit E [Nitrosomonas eutropha C91]
 gi|114307943|gb|ABI59186.1| NADH dehydrogenase subunit E [Nitrosomonas eutropha C91]
          Length = 162

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 8/106 (7%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
           K+ +  I+ YP   +++AV+  L +AQ + GWL    M ++A++L +P + VYEVATFY 
Sbjct: 12  KKIDREIAKYPTDKKQSAVMSALAIAQDEKGWLATETMDFIANYLEMPAIAVYEVATFYN 71

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           M+  KPIG        +Y L  CT  PC L  S+  ++ +KKK ++
Sbjct: 72  MYNLKPIG--------KYKLTVCTNLPCALSGSNQTVDYLKKKLDI 109


>gi|254780856|ref|YP_003065269.1| NADH-quinone oxidoreductase subunit E [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040533|gb|ACT57329.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 218

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 40/163 (24%)

Query: 59  IISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118
           +IS YP    ++AVIPLL  AQ Q GW+  +A+  VA+ L++  +RV E+ATFYT F   
Sbjct: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88

Query: 119 PIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN-------------------- 158
           P+G        + H+  C TTPC LR  + ++EV + K +                    
Sbjct: 89  PVG-------TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141

Query: 159 --------MMLER---QDLEPKDMEQIIDDLKAGKKPA--PGP 188
                   +M+ +   +DL P+ +E+IID    G+     PGP
Sbjct: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184


>gi|430813936|emb|CCJ28764.1| unnamed protein product [Pneumocystis jirovecii]
          Length = 300

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/151 (41%), Positives = 79/151 (52%), Gaps = 39/151 (25%)

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           M YVA  LN+PKMRVYEVATFYTM+ R+P+G     +++Q     CTTTPC L  SD IL
Sbjct: 1   MDYVAKLLNIPKMRVYEVATFYTMYNREPVG-----TLVQV----CTTTPCQLCGSDEIL 51

Query: 151 EVIK--------------KKCNMMLE--RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
           + ++              K   M +E   +DL PK    I+  +K GK P  GP      
Sbjct: 52  KAVQDYLGVTPGHTTSDGKFTLMEIECAGEDLNPKTCIDILKMVKDGKIPKHGP------ 105

Query: 195 IGSQSGRFCQAREAYHDMTSLTGEPHGPWDS 225
              Q+GR  Q+ E    +TSLT E   PW S
Sbjct: 106 ---QTGR--QSCEPKSGLTSLTDE---PWTS 128


>gi|310816711|ref|YP_003964675.1| ATP synthase subunit E [Ketogulonicigenium vulgare Y25]
 gi|385234314|ref|YP_005795656.1| ATP synthase subunit E [Ketogulonicigenium vulgare WSH-001]
 gi|308755446|gb|ADO43375.1| ATP synthase subunit E [Ketogulonicigenium vulgare Y25]
 gi|343463225|gb|AEM41660.1| ATP synthase subunit E [Ketogulonicigenium vulgare WSH-001]
          Length = 238

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 81/174 (46%), Gaps = 47/174 (27%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           I+ YP G + +A+IPLL  AQ Q GWL  +A+ +VA+ L +P +R  EVATFY MF  +P
Sbjct: 27  IAKYPAGRQASAIIPLLWRAQEQEGWLTRAAIEHVANMLEMPFIRALEVATFYFMFQLQP 86

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK----------------------- 156
           +G          HL  C T  C L  ++ ++ V ++K                       
Sbjct: 87  VGAV-------AHLQICGTLSCMLCGAEDLVSVCRQKIAAQPHSLSDDGKLSWEEVECLG 139

Query: 157 --CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRF 202
              N  + +      +DL  + +  +ID L+AG  P PGP         Q+GRF
Sbjct: 140 ACTNAPMAQIGKDYYEDLTAEGLSDLIDALRAGDVPQPGP---------QNGRF 184


>gi|392969435|ref|ZP_10334850.1| NADH-quinone oxidoreductase, E subunit [Fibrisoma limi BUZ 3]
 gi|387841629|emb|CCH56908.1| NADH-quinone oxidoreductase, E subunit [Fibrisoma limi BUZ 3]
          Length = 166

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 8/110 (7%)

Query: 47  EFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106
           +FTPD   +A+ II+ YP G +++A++PLL L Q Q GW     M Y+A  LN+  + VY
Sbjct: 10  QFTPDRLAKAQEIIARYPEGKQKSALLPLLHLLQEQEGWTSTEGMDYIARMLNIQPIEVY 69

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           EVATFYTM+  KP+G    K +++Y    C T PC L   + +   +K++
Sbjct: 70  EVATFYTMYHIKPVG----KHVIEY----CRTGPCCLMGGEEVYAHLKQR 111


>gi|171058189|ref|YP_001790538.1| NADH-quinone oxidoreductase subunit E [Leptothrix cholodnii SP-6]
 gi|170775634|gb|ACB33773.1| NADH-quinone oxidoreductase, E subunit [Leptothrix cholodnii SP-6]
          Length = 175

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 63/109 (57%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
           F+    +R    ++ YP   +++AV+  L +AQ+ +GW+   A   +AD+L +P + V+E
Sbjct: 13  FSAATLERFAREVAKYPADQKQSAVMACLSIAQQVNGWVSAEAEKQIADYLGMPAIAVHE 72

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           V TFY M+ ++P+G        Q+ LN CT  PC LRN  A LE + +K
Sbjct: 73  VTTFYNMYNQQPVG--------QFKLNVCTNLPCLLRNGQAALEHLCQK 113


>gi|227535967|ref|ZP_03966016.1| NADH dehydrogenase (ubiquinone) subunit E [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227244210|gb|EEI94225.1| NADH dehydrogenase (ubiquinone) subunit E [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 171

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 68/113 (60%), Gaps = 8/113 (7%)

Query: 47  EFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106
           EF+ +  ++   ++S YP G +++A++P+L L Q + GWL + AM  VA +L++  + VY
Sbjct: 11  EFSAELLQKFGEVVSRYPEGKQKSALLPVLHLVQAEFGWLSVDAMDKVAHYLDIQPIEVY 70

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           EVATFYTM+  +P G        +Y L  C T PC L  ++ I++ I+ +  +
Sbjct: 71  EVATFYTMYFLEPKG--------KYVLEVCRTGPCCLVGAEKIMDHIENRLGV 115


>gi|186476760|ref|YP_001858230.1| NADH dehydrogenase subunit E [Burkholderia phymatum STM815]
 gi|184193219|gb|ACC71184.1| NADH-quinone oxidoreductase, E subunit [Burkholderia phymatum
           STM815]
          Length = 161

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 11/112 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +  K  +  I+ YP   +++AV+  L + Q +HGWL    M +VAD+L +P + V E
Sbjct: 2   ISAEGLKEIDRAIAKYPADQKQSAVMSALAVGQEEHGWLSPELMQFVADYLGMPAVAVQE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL---RNSDAILEVIKKK 156
           VATFYTM+  KP+G        +Y +  CT  PC L     SD+  E +K+K
Sbjct: 62  VATFYTMYETKPVG--------KYKITLCTNLPCQLGPDGGSDSAAEYLKQK 105


>gi|388455140|ref|ZP_10137435.1| NADH dehydrogenase I chain E [Fluoribacter dumoffii Tex-KL]
          Length = 167

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 60/102 (58%), Gaps = 8/102 (7%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           I+ YP   +++AV+  L + Q +HG L    M  VAD+L +P + VYEVA+FYTM+  KP
Sbjct: 25  IAKYPADQKQSAVMSALRIVQEEHGHLTTELMDAVADYLEMPPISVYEVASFYTMYEHKP 84

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMML 161
           +G   I        N CT   C LR+S A++E ++KK  + L
Sbjct: 85  VGRHSI--------NVCTNISCMLRDSAAVVEHLEKKLGIKL 118


>gi|325105663|ref|YP_004275317.1| NADH dehydrogenase subunit E [Pedobacter saltans DSM 12145]
 gi|324974511|gb|ADY53495.1| NADH dehydrogenase subunit E [Pedobacter saltans DSM 12145]
          Length = 174

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 71/125 (56%), Gaps = 10/125 (8%)

Query: 47  EFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106
           EF+ +   + + I+  YP G +++A++P+L   Q  +GWL  SAM  VA++L +  + VY
Sbjct: 11  EFSSELVSKFDEIVRRYPEGKQKSALLPVLHEVQAVYGWLSSSAMDRVAEYLKISPIEVY 70

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLERQDL 166
           EVATFYTM+  KP G        ++ L  C T PC L  ++ +L  I +K  + +E  ++
Sbjct: 71  EVATFYTMYFLKPQG--------KFTLEVCRTGPCCLVGAEKLLNYIGEK--LGVEEGEI 120

Query: 167 EPKDM 171
            P  +
Sbjct: 121 TPDGL 125


>gi|359728381|ref|ZP_09267077.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira weilii str.
           2006001855]
          Length = 159

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 73/115 (63%), Gaps = 12/115 (10%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP-- 101
           + ++F+ +++KR + ++ ++P   +R+ V+P L + QR++G++    M+Y+AD L  P  
Sbjct: 1   MSYKFSEESEKRFQKMLEVFP--DKRSLVLPCLYILQRENGFVDQDGMNYIADRLGDPIS 58

Query: 102 KMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
             +VY VATFYT++ +KP+G        +YH+  C T+ C+LR SD I E I K+
Sbjct: 59  LAQVYGVATFYTLYNKKPVG--------KYHIQICGTSSCYLRGSDEIEEHICKR 105


>gi|300771673|ref|ZP_07081548.1| NADH-quinone oxidoreductase subunit E [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761662|gb|EFK58483.1| NADH-quinone oxidoreductase subunit E [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 171

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 67/113 (59%), Gaps = 8/113 (7%)

Query: 47  EFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106
           EF+ +  ++   ++S YP G +++A++P+L L Q + GWL + AM  VA +L++  + VY
Sbjct: 11  EFSAELLQKFGEVVSRYPEGKQKSALLPVLHLVQAEFGWLSVDAMDKVAHYLDIQPIEVY 70

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           EVATFYTM+  +P G        +Y L  C T PC L  ++ I+  I+ +  +
Sbjct: 71  EVATFYTMYFLEPKG--------KYVLEVCRTGPCCLVGAEKIMTHIENRLGV 115


>gi|456864603|gb|EMF83002.1| NADH-quinone oxidoreductase, E subunit [Leptospira weilii serovar
           Topaz str. LT2116]
          Length = 159

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 73/115 (63%), Gaps = 12/115 (10%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP-- 101
           + ++F+ +++KR + ++ ++P   +R+ V+P L + QR++G++    M+Y+AD L  P  
Sbjct: 1   MSYKFSEESEKRFQKMLEVFP--DKRSLVLPCLYILQRENGFVDQEGMNYIADRLGDPIS 58

Query: 102 KMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
             +VY VATFYT++ +KP+G        +YH+  C T+ C+LR SD I E I K+
Sbjct: 59  LAQVYGVATFYTLYNKKPVG--------KYHIQICGTSSCYLRGSDEIEEHICKR 105


>gi|323525440|ref|YP_004227593.1| NADH-quinone oxidoreductase subunit E [Burkholderia sp. CCGE1001]
 gi|407712811|ref|YP_006833376.1| NADH-quinone oxidoreductase subunit E [Burkholderia phenoliruptrix
           BR3459a]
 gi|323382442|gb|ADX54533.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. CCGE1001]
 gi|407234995|gb|AFT85194.1| NADH-quinone oxidoreductase subunit E [Burkholderia phenoliruptrix
           BR3459a]
          Length = 161

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 11/112 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +  K  +  I+ YP   +++AV+  L  AQ +HGWL    M +VAD+L +P + V E
Sbjct: 2   ISAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL---RNSDAILEVIKKK 156
           VATFYTM+   P+G        +Y +  CT  PC L     SD+  E +K+K
Sbjct: 62  VATFYTMYETSPVG--------KYKITLCTNLPCQLGPDGGSDSAAEYLKQK 105


>gi|187923344|ref|YP_001894986.1| NADH dehydrogenase subunit E [Burkholderia phytofirmans PsJN]
 gi|187714538|gb|ACD15762.1| NADH-quinone oxidoreductase, E subunit [Burkholderia phytofirmans
           PsJN]
          Length = 161

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 11/112 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +  K  +  I+ YP   +++AV+  L  AQ +HGWL    M +VAD+L +P + V E
Sbjct: 2   ISAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLTPELMQFVADYLGMPAVAVQE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL---RNSDAILEVIKKK 156
           VATFYTM+   P+G        +Y +  CT  PC L     SD+  E +K+K
Sbjct: 62  VATFYTMYETSPVG--------KYKITLCTNLPCQLGPDGGSDSAAEYLKQK 105


>gi|91782616|ref|YP_557822.1| NADH dehydrogenase subunit E [Burkholderia xenovorans LB400]
 gi|385203219|ref|ZP_10030089.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. Ch1-1]
 gi|91686570|gb|ABE29770.1| NADH dehydrogenase subunit E [Burkholderia xenovorans LB400]
 gi|385183110|gb|EIF32384.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. Ch1-1]
          Length = 161

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 11/112 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +  K  +  I+ YP   +++AV+  L  AQ +HGWL    M +VAD+L +P + V E
Sbjct: 2   ISAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL---RNSDAILEVIKKK 156
           VATFYTM+   P+G        +Y +  CT  PC L     SD+  E +K+K
Sbjct: 62  VATFYTMYETSPVG--------KYKITLCTNLPCQLGPDGGSDSAAEYLKQK 105


>gi|114771820|ref|ZP_01449213.1| NADH dehydrogenase subunit E [Rhodobacterales bacterium HTCC2255]
 gi|114547636|gb|EAU50527.1| NADH dehydrogenase subunit E [alpha proteobacterium HTCC2255]
          Length = 245

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 49/211 (23%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F F+ +N K A+  +  YP G + +AVIP+L  AQ Q GWL   A+  V + L +P +RV
Sbjct: 14  FTFSDENLKWAQNQMKKYPSGRQASAVIPILWRAQEQEGWLSKPAIEAVGELLEMPFIRV 73

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL----EVIKKKCNMML 161
            EVA+FY MF   P+G          H+  C T  C +  ++ ++    E+I +K + + 
Sbjct: 74  LEVASFYFMFQLAPVGS-------VAHIQVCGTLSCMICGAEDLIGICKEIISEKPHELS 126

Query: 162 E---------------------------RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
           E                            +DL       I++ L  G+ P PGP      
Sbjct: 127 EDGKLSWEEVECLGACANAPMAQIGKDFYEDLTEASFRNILNQLLKGEVPTPGP------ 180

Query: 195 IGSQSGRFCQAREAYHDMTSLTGEPHGPWDS 225
              Q+GR+  A E    +T+L+    G +++
Sbjct: 181 ---QNGRY--ASEPLSGLTTLSDFNSGKYET 206


>gi|30249733|ref|NP_841803.1| NADH dehydrogenase subunit E [Nitrosomonas europaea ATCC 19718]
 gi|30180770|emb|CAD85684.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit [Nitrosomonas
           europaea ATCC 19718]
          Length = 162

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 8/97 (8%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           ++ YP   +++AV+  L +AQ + GWL    M ++AD+L +P + VYEVATFY M+  KP
Sbjct: 18  VAKYPADRKQSAVMSALAIAQDEKGWLATETMDFIADYLEMPAIAVYEVATFYNMYNLKP 77

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           +G        +Y L  CT  PC L   +   + +K+K
Sbjct: 78  VG--------KYKLTVCTNLPCALSGGNQTADYLKQK 106


>gi|325983285|ref|YP_004295687.1| NADH-quinone oxidoreductase subunit E [Nitrosomonas sp. AL212]
 gi|325532804|gb|ADZ27525.1| NADH-quinone oxidoreductase, E subunit [Nitrosomonas sp. AL212]
          Length = 158

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 64/109 (58%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ KR +  I+ YPV  +++AV+  L +AQ + GWL    M++VA++L +P + VYE
Sbjct: 2   LSAESLKRIDREIAKYPVDRKQSAVMSALAIAQEEKGWLANETMNFVAEYLGMPPIAVYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P G        +Y +  CT  PC L  S+   + IK+K
Sbjct: 62  VATFYNMYNLEPTG--------KYKITICTNLPCALSGSNDSAKYIKQK 102


>gi|350545164|ref|ZP_08914669.1| NADH-ubiquinone oxidoreductase chain E [Candidatus Burkholderia
           kirkii UZHbot1]
 gi|350527055|emb|CCD38996.1| NADH-ubiquinone oxidoreductase chain E [Candidatus Burkholderia
           kirkii UZHbot1]
          Length = 168

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 11/112 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +  K  +  ++ YP   +++AV+  L +AQ +HGWL    M +VAD+L++P + V E
Sbjct: 9   ISAEGLKEIDRAVAKYPAEQKQSAVMAALAVAQEEHGWLSPELMQFVADYLSMPPVAVQE 68

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL---RNSDAILEVIKKK 156
           VATFYTM+  KP+G+ +I          CT  PC L     SD+  E +K+K
Sbjct: 69  VATFYTMYELKPVGKHKI--------TLCTNLPCQLGPDGGSDSAAEYLKQK 112


>gi|413958288|ref|ZP_11397527.1| NADH dehydrogenase subunit E [Burkholderia sp. SJ98]
 gi|413940868|gb|EKS72828.1| NADH dehydrogenase subunit E [Burkholderia sp. SJ98]
          Length = 161

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 11/115 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +  K  +  ++ YP   +++AV+  L +AQ +HGWL    M +VAD+L++P + V E
Sbjct: 2   ISAEGLKEIDRAVAKYPAEQKQSAVMAALAVAQEEHGWLSPEIMQFVADYLSMPPVAVQE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL---RNSDAILEVIKKKCNM 159
           VATFYTM+  KP+G+ +I          CT  PC L     SD+  E +K+K  +
Sbjct: 62  VATFYTMYELKPVGKHKI--------TLCTNLPCQLGPDGGSDSAAEYLKQKLGI 108


>gi|373954733|ref|ZP_09614693.1| NADH-quinone oxidoreductase, E subunit [Mucilaginibacter paludis
           DSM 18603]
 gi|373891333|gb|EHQ27230.1| NADH-quinone oxidoreductase, E subunit [Mucilaginibacter paludis
           DSM 18603]
          Length = 174

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 69/120 (57%), Gaps = 8/120 (6%)

Query: 40  DNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLN 99
           ++     EF+ D   +   ++S YP G +++ ++P+L L Q + GW+   AM  VA++L 
Sbjct: 5   EDTQTSVEFSEDLIAKFNDVVSRYPEGKQKSGLLPILHLVQAEFGWVSPVAMDKVAEYLG 64

Query: 100 LPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           +  + VYEVA+FY+M++ +P G        +Y L  C T PC L  ++ I++ I++K  +
Sbjct: 65  IQHIEVYEVASFYSMYLLRPQG--------KYLLEVCRTGPCCLVGAEKIMDYIEQKLGV 116


>gi|377821141|ref|YP_004977512.1| NADH-quinone oxidoreductase subunit E [Burkholderia sp. YI23]
 gi|357935976|gb|AET89535.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. YI23]
          Length = 161

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 11/115 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +  K  +  ++ YP   +++AV+  L +AQ +HGWL    M +VAD+L++P + V E
Sbjct: 2   ISAEGLKEIDRAVAKYPAEQKQSAVMAALAVAQEEHGWLSPDIMQFVADYLSMPPVAVQE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL---RNSDAILEVIKKKCNM 159
           VATFYTM+  KP+G+ +I          CT  PC L     SD+  E +K+K  +
Sbjct: 62  VATFYTMYELKPVGKHKI--------TLCTNLPCQLGPDGGSDSAAEYLKQKLGI 108


>gi|255019911|ref|ZP_05291986.1| NADH-ubiquinone oxidoreductase chain E [Acidithiobacillus caldus
           ATCC 51756]
 gi|340783284|ref|YP_004749891.1| NADH-ubiquinone oxidoreductase subunit E [Acidithiobacillus caldus
           SM-1]
 gi|254970691|gb|EET28178.1| NADH-ubiquinone oxidoreductase chain E [Acidithiobacillus caldus
           ATCC 51756]
 gi|340557435|gb|AEK59189.1| NADH-ubiquinone oxidoreductase chain E [Acidithiobacillus caldus
           SM-1]
          Length = 163

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 8/97 (8%)

Query: 63  YPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGE 122
           YPV   R+A++  L +AQ +HGWLP   +  VA+ L +P ++ +EVATFYTM+  KP+G 
Sbjct: 17  YPVDQARSALLAALRIAQEEHGWLPTELIEEVAEVLGIPSIQAFEVATFYTMYDLKPVG- 75

Query: 123 ERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
                  ++ L  C +  C+L  SD IL  ++K+  +
Sbjct: 76  -------KHKLCVCGSVSCFLNGSDDILAHLQKRLGI 105


>gi|170696395|ref|ZP_02887524.1| NADH-quinone oxidoreductase, E subunit [Burkholderia graminis
           C4D1M]
 gi|170138723|gb|EDT06922.1| NADH-quinone oxidoreductase, E subunit [Burkholderia graminis
           C4D1M]
          Length = 161

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 11/112 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +  K  +  I+ YP   +++AV+  L  AQ +HGWL    M +VAD+L +P + V E
Sbjct: 2   ISAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL---RNSDAILEVIKKK 156
           VATFYTM+   P+G+ +I          CT  PC L     SD+  E +K+K
Sbjct: 62  VATFYTMYETSPVGKHKI--------TLCTNLPCQLGPDGGSDSAAEYLKQK 105


>gi|110637783|ref|YP_677990.1| NADH dehydrogenase I subunit E [Cytophaga hutchinsonii ATCC 33406]
 gi|110280464|gb|ABG58650.1| NADH dehydrogenase subunit E [Cytophaga hutchinsonii ATCC 33406]
          Length = 177

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 70/120 (58%), Gaps = 9/120 (7%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQ-HGWLPISAMHYVADFLNLPKM 103
           +F+F+  + K+ + + + YP G +++A++P+L +AQ +  GWLP   M YVA  L++  +
Sbjct: 7   QFQFSEASLKKIQEMKARYPEGRQKSALLPVLHMAQDELGGWLPAPLMDYVASLLDITPI 66

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER 163
            VYEVA+FY+M+  KP+G        +    +C T PC L   + ++E  + K  + L +
Sbjct: 67  EVYEVASFYSMYNLKPVG--------KCMFEFCQTGPCCLNGVEELIEYTEDKLGIKLNQ 118


>gi|392944859|ref|ZP_10310501.1| NADH-quinone oxidoreductase, E subunit [Frankia sp. QA3]
 gi|392288153|gb|EIV94177.1| NADH-quinone oxidoreductase, E subunit [Frankia sp. QA3]
          Length = 258

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 39/170 (22%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
           F P+    A  II+ YP G  R+A++PLL L Q + G++    + + AD L + +  V  
Sbjct: 3   FPPETHAAAAEIIARYPAGRSRSALLPLLHLVQAEQGFVTTEGVAFCADTLGITQAEVGA 62

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKC---------- 157
           VATFYTM+ R+P+G+        Y ++ CT   C L   D +   + ++           
Sbjct: 63  VATFYTMYKRRPVGD--------YLVSVCTNLSCALLGGDEVFARVAERLGIGHDETTPD 114

Query: 158 -NMMLERQD--------------------LEPKDMEQIIDDLKAGKKPAP 186
            ++ LE  +                    ++P   + I+  L+AG++PAP
Sbjct: 115 GSITLEHAECLAACDYAPVMTVNYEFYDQVDPDSAQAIVAGLQAGERPAP 164


>gi|238028139|ref|YP_002912370.1| NADH dehydrogenase subunit E [Burkholderia glumae BGR1]
 gi|237877333|gb|ACR29666.1| NADH dehydrogenase subunit E [Burkholderia glumae BGR1]
          Length = 161

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 11/115 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +  K  + +++ YP   +++AV+  L +AQ +HGWL    M +VAD+L +P + V E
Sbjct: 2   ISAEGLKEIDRVVAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL---RNSDAILEVIKKKCNM 159
           VATFYTM+  KP+G+ +I          CT  PC L     ++A  + +K+K  +
Sbjct: 62  VATFYTMYELKPVGKHKI--------TLCTNLPCQLGPHGGAEATADYLKQKLGI 108


>gi|148361098|ref|YP_001252305.1| NADH dehydrogenase I subunit E [Legionella pneumophila str. Corby]
 gi|296108428|ref|YP_003620129.1| NADH dehydrogenase I chain E [Legionella pneumophila 2300/99 Alcoy]
 gi|397668456|ref|YP_006509993.1| NADH:ubiquinone oxidoreductase subunit E [Legionella pneumophila
           subsp. pneumophila]
 gi|148282871|gb|ABQ56959.1| NADH dehydrogenase I, E subunit [Legionella pneumophila str. Corby]
 gi|295650330|gb|ADG26177.1| NADH dehydrogenase I chain E [Legionella pneumophila 2300/99 Alcoy]
 gi|395131867|emb|CCD10160.1| NADH:ubiquinone oxidoreductase, chain E [Legionella pneumophila
           subsp. pneumophila]
          Length = 167

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 9/116 (7%)

Query: 47  EFTPDNKKR-AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           +  P N+ R  +  IS YP   +++AV+  L + Q +HG L    M+ VA++L++P + V
Sbjct: 11  QLMPANRMRDIDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAV 70

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMML 161
           YEVA+FYTM+  KP+G   I        N CT   C LR+S  ++E ++KK  + L
Sbjct: 71  YEVASFYTMYEHKPVGRHLI--------NVCTNISCMLRDSAGVVEHLEKKLGVNL 118


>gi|374599422|ref|ZP_09672424.1| NADH dehydrogenase subunit E [Myroides odoratus DSM 2801]
 gi|423324569|ref|ZP_17302410.1| NADH-quinone oxidoreductase, E subunit [Myroides odoratimimus CIP
           103059]
 gi|373910892|gb|EHQ42741.1| NADH dehydrogenase subunit E [Myroides odoratus DSM 2801]
 gi|404608070|gb|EKB07556.1| NADH-quinone oxidoreductase, E subunit [Myroides odoratimimus CIP
           103059]
          Length = 176

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 40/167 (23%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVY 106
            TP+ ++R + ++S YP   +++A++P+L  AQ  H  WL +  M  VA+ L +  + VY
Sbjct: 12  ITPELQQRIDELLSHYPADKKKSALLPVLHAAQDAHDNWLSVELMDKVAEILGISSIEVY 71

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE--------------- 151
           EV TFYTM+ +KP+G         Y   +C T+ C +R +D ++E               
Sbjct: 72  EVVTFYTMYNQKPMG--------TYMFEFCLTSCCGIRGADDMMEYACEKLGIKPGETTP 123

Query: 152 -----VIKKKC-------NMM----LERQDLEPKDMEQIIDDLKAGK 182
                V+  +C        MM      ++ L  + ++QIIDD KAGK
Sbjct: 124 DGLFSVVGVQCLGACGYAPMMQLGDFYKEHLTREKIDQIIDDCKAGK 170


>gi|326799004|ref|YP_004316823.1| NADH-quinone oxidoreductase subunit E [Sphingobacterium sp. 21]
 gi|326549768|gb|ADZ78153.1| NADH-quinone oxidoreductase, E subunit [Sphingobacterium sp. 21]
          Length = 170

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 8/113 (7%)

Query: 47  EFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106
           E   D   + + I+  YP G +++A++P+L L Q + GWL + AM  VA +L +  + VY
Sbjct: 11  EIKDDLLAKFDEIVKRYPEGRQKSALLPILHLVQAEFGWLSVDAMDKVAAYLRIEPIEVY 70

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           EVATFYTMF  +P G        +Y L  C T PC L  ++ I++ I+ +  +
Sbjct: 71  EVATFYTMFFLQPQG--------KYVLEVCRTGPCCLVGAERIMKHIENRLGV 115


>gi|330817788|ref|YP_004361493.1| ATP synthase subunit E [Burkholderia gladioli BSR3]
 gi|327370181|gb|AEA61537.1| ATP synthase subunit E [Burkholderia gladioli BSR3]
          Length = 161

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 11/115 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +  K  + +I+ YP   +++AV+  L +AQ +HGWL    M +VAD+L +P + V E
Sbjct: 2   ISAEGLKEIDRVIAKYPADQKQSAVMSALAVAQDEHGWLSPELMQFVADYLGMPAVAVQE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL---RNSDAILEVIKKKCNM 159
           VATFYTM+  KP+G+ +        L  CT  PC L     ++A  + +K+K  +
Sbjct: 62  VATFYTMYELKPVGKHK--------LTLCTNLPCQLGPHGGAEATADYLKQKLGI 108


>gi|307730336|ref|YP_003907560.1| NADH-quinone oxidoreductase subunit E [Burkholderia sp. CCGE1003]
 gi|307584871|gb|ADN58269.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. CCGE1003]
          Length = 161

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 11/112 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +  K  +  I+ YP   +++AV+  L  AQ +HGWL    M +VAD+L +P + V E
Sbjct: 2   ISAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL---RNSDAILEVIKKK 156
           VATFYTM+   P+G        +Y +  CT  PC L     S++  E +K+K
Sbjct: 62  VATFYTMYETSPVG--------KYKITLCTNLPCQLGPDGGSESAAEYLKQK 105


>gi|254491915|ref|ZP_05105094.1| NADH-quinone oxidoreductase, E subunit subfamily [Methylophaga
           thiooxidans DMS010]
 gi|224463393|gb|EEF79663.1| NADH-quinone oxidoreductase, E subunit subfamily [Methylophaga
           thiooxydans DMS010]
          Length = 170

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 67/113 (59%), Gaps = 9/113 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVY 106
           FT   +++ +  I+ YP G  ++AVIP L + Q  + GWL  + M  +A +L++P + VY
Sbjct: 14  FTETLREQMDTWIAKYPAGQAQSAVIPCLHILQAANEGWLTTAIMDALASYLSIPAISVY 73

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           EVATFYTMF   P+G+ +I        + CT   C L  S+ +++ I++K N+
Sbjct: 74  EVATFYTMFELSPVGKHKI--------SVCTNISCMLCGSEKVMQHIEQKLNI 118


>gi|372489657|ref|YP_005029222.1| NADH-quinone oxidoreductase subunit E [Dechlorosoma suillum PS]
 gi|359356210|gb|AEV27381.1| NADH-quinone oxidoreductase, E subunit [Dechlorosoma suillum PS]
          Length = 157

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            TP++ K+ +  ++ YP   +++AV+  L +AQ + GWL    + +VA++L +P M   E
Sbjct: 2   LTPESLKKIDREVAKYPADQKQSAVMASLAIAQEEKGWLADETIEFVANYLGMPPMAALE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VA+FY M+ RKP+G        +Y L  CT  PC L   +   E +++K
Sbjct: 62  VASFYNMYDRKPVG--------KYKLTVCTNLPCALTGGEHAGEYLQQK 102


>gi|111220503|ref|YP_711297.1| NADH dehydrogenase subunit E [Frankia alni ACN14a]
 gi|111148035|emb|CAJ59701.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           (NDH-1, chain E) [Frankia alni ACN14a]
          Length = 257

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 39/170 (22%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
           F+P+    A  II+ YP G  R+A++PLL L Q + G +    + + AD L + +  V  
Sbjct: 4   FSPETHAAAAEIIARYPAGRSRSALLPLLHLVQAEQGSVTTEGVTFCADTLGITQAEVGA 63

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKC---------- 157
           VATFYTM+ R+P+G+        Y ++ CT   C L   D +   + ++           
Sbjct: 64  VATFYTMYKRRPVGD--------YLVSVCTNLSCALLGGDEVFARVAERLGVGHDETTPD 115

Query: 158 -NMMLERQD--------------------LEPKDMEQIIDDLKAGKKPAP 186
            ++ LE  +                    ++P     I++ L+AG++PAP
Sbjct: 116 GSITLEHAECLAACDYAPVMTVNYEFYDQVDPDSAVAIVEGLQAGERPAP 165


>gi|421556236|ref|ZP_16002153.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis 80179]
 gi|402338089|gb|EJU73328.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis 80179]
          Length = 157

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 8/97 (8%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           ++ YP    R+AV+  L +AQ + GWL    + +VAD++ +P  + YEVATFY M+   P
Sbjct: 14  LAKYPAEQRRSAVMSALRIAQNEKGWLAPETIEFVADYIGIPPAQAYEVATFYNMYNLAP 73

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           +G        +Y L  CT  PC LR   A  E +KKK
Sbjct: 74  VG--------KYKLTVCTNLPCALRGGMATGEYLKKK 102


>gi|209518511|ref|ZP_03267332.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. H160]
 gi|209501056|gb|EEA01091.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. H160]
          Length = 161

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 11/112 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +  K  +  I+ YP   +++AV+  L  AQ +HGWL    M +VAD+L +P + V E
Sbjct: 2   ISAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMEFVADYLGMPAIAVQE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL---RNSDAILEVIKKK 156
           VATFYTM+   P+G        +Y +  CT  PC L     S++  E +K+K
Sbjct: 62  VATFYTMYETSPVG--------KYKITLCTNLPCQLGPDGGSESAAEYLKQK 105


>gi|374855112|dbj|BAL57977.1| NADH dehydrogenase I subunit E [uncultured prokaryote]
          Length = 162

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 67/116 (57%), Gaps = 10/116 (8%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
           +K  F  +  + AE IIS+YP   + +A++P+L +AQR+ G++      YVA+ L +P +
Sbjct: 1   MKVSFRDEVLREAERIISLYP--RKESALLPILHIAQREFGYISDEVEMYVAELLQIPPI 58

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
            V EV +FYTMF +KP G        +YH+  C    C L  S+ +++ +K++  +
Sbjct: 59  HVREVVSFYTMFRKKPAG--------RYHIQVCRNISCSLLGSEVLIDYLKRQLKI 106


>gi|397665378|ref|YP_006506916.1| NADH:ubiquinone oxidoreductase subunit E [Legionella pneumophila
           subsp. pneumophila]
 gi|395128789|emb|CCD07009.1| NADH:ubiquinone oxidoreductase, chain E [Legionella pneumophila
           subsp. pneumophila]
          Length = 167

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 61/102 (59%), Gaps = 8/102 (7%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           IS YP   +++AV+  L + Q +HG L    M+ VA++L++P + VYEVA+FYTM+  KP
Sbjct: 25  ISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMYEHKP 84

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMML 161
           +G   I        N CT   C LR+S  ++E ++KK  + L
Sbjct: 85  VGRHLI--------NVCTNISCMLRDSAGVVEHLEKKLGVNL 118


>gi|307611654|emb|CBX01345.1| NADH dehydrogenase I chain E [Legionella pneumophila 130b]
          Length = 167

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 61/102 (59%), Gaps = 8/102 (7%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           IS YP   +++AV+  L + Q +HG L    M+ VA++L++P + VYEVA+FYTM+  KP
Sbjct: 25  ISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMYEHKP 84

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMML 161
           +G   I        N CT   C LR+S  ++E ++KK  + L
Sbjct: 85  VGRHLI--------NVCTNISCMLRDSAGVVEHLEKKLGVNL 118


>gi|167585975|ref|ZP_02378363.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ubonensis Bu]
          Length = 161

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 11/115 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +  K  +  I+ YP   +++AV+  L +AQ +HGWL    M +VAD+L +P + V E
Sbjct: 2   ISAEGLKEIDRAIAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL---RNSDAILEVIKKKCNM 159
           VATFYTM+  KP+G+ +I          CT  PC L     ++A  + +K+K  +
Sbjct: 62  VATFYTMYELKPVGKHKI--------TLCTNLPCQLGPHGGAEATADYLKQKLGI 108


>gi|52842983|ref|YP_096782.1| NADH dehydrogenase I subunit E [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|378778668|ref|YP_005187110.1| NADH dehydrogenase I subunit E [Legionella pneumophila subsp.
           pneumophila ATCC 43290]
 gi|52630094|gb|AAU28835.1| NADH dehydrogenase I, E subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|364509486|gb|AEW53010.1| NADH dehydrogenase I, E subunit [Legionella pneumophila subsp.
           pneumophila ATCC 43290]
          Length = 167

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 61/102 (59%), Gaps = 8/102 (7%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           IS YP   +++AV+  L + Q +HG L    M+ VA++L++P + VYEVA+FYTM+  KP
Sbjct: 25  ISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMYEHKP 84

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMML 161
           +G   I        N CT   C LR+S  ++E ++KK  + L
Sbjct: 85  VGRHLI--------NVCTNISCMLRDSAGVVEHLEKKLGVNL 118


>gi|74317164|ref|YP_314904.1| NADH dehydrogenase subunit E [Thiobacillus denitrificans ATCC
           25259]
 gi|74056659|gb|AAZ97099.1| NADH dehydrogenase I chain E [Thiobacillus denitrificans ATCC
           25259]
          Length = 168

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 8/118 (6%)

Query: 39  DDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFL 98
           D ++  K E + +     +A ++ YP   +++AV+  L +AQ + GWL    + YVAD+L
Sbjct: 4   DQDVKDKVELSAEALALIDAEVAKYPADQKQSAVMAALRIAQVEKGWLKPELIDYVADYL 63

Query: 99  NLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
            +P +  YEVATFY M+  +P+G  +I          CT  PC LR +  I   +K+K
Sbjct: 64  QMPPIAAYEVATFYNMYDTQPVGRHKI--------TVCTNLPCALRGAGEIAAHLKEK 113


>gi|394989149|ref|ZP_10381983.1| NADH dehydrogenase subunit E [Sulfuricella denitrificans skB26]
 gi|393791568|dbj|GAB71622.1| NADH dehydrogenase subunit E [Sulfuricella denitrificans skB26]
          Length = 157

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 65/109 (59%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            +P++ K+ +  I+ YP GH+++AV+  L +AQ + GWL    + +VA +L +P +   E
Sbjct: 2   LSPESLKKIDREIAKYPAGHKQSAVMAALRIAQDEKGWLAPETIEFVAVYLGMPPIAAQE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y +  CT  PC L  +++ +E +++K
Sbjct: 62  VATFYNMYNLQPVG--------KYKITVCTNLPCTLMGAESAVEHLQRK 102


>gi|54298768|ref|YP_125137.1| NADH dehydrogenase I chain E [Legionella pneumophila str. Paris]
 gi|53752553|emb|CAH13985.1| NADH dehydrogenase I chain E [Legionella pneumophila str. Paris]
          Length = 155

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 66/113 (58%), Gaps = 9/113 (7%)

Query: 50  PDNKKR-AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEV 108
           P N+ R  +  IS YP   +++AV+  L + Q +HG L    M+ VA++L++P + VYEV
Sbjct: 2   PANRMRDIDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEV 61

Query: 109 ATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMML 161
           A+FYTM+  KP+G   I        N CT   C LR+S  ++E ++KK  + L
Sbjct: 62  ASFYTMYEHKPVGRHLI--------NVCTNISCMLRDSAGVVEHLEKKLGVNL 106


>gi|317051067|ref|YP_004112183.1| NADH-quinone oxidoreductase subunit E [Desulfurispirillum indicum
           S5]
 gi|316946151|gb|ADU65627.1| NADH-quinone oxidoreductase, E subunit [Desulfurispirillum indicum
           S5]
          Length = 161

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 10/117 (8%)

Query: 43  DVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPK 102
           D  F F  + +++ + ++  YP+  +++  +P L +AQRQ GW+   AM Y+A  L +P 
Sbjct: 4   DKPFAFNEETERQFQELLKRYPI--KKSLNLPCLWMAQRQEGWVSQEAMEYIAQRLEIPV 61

Query: 103 MRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
             VYEVATFYTM+   P+G        +YH+  C T  C LR  + IL  I  K  +
Sbjct: 62  TDVYEVATFYTMYNLHPVG--------KYHIQLCRTLSCDLRGKEEILRHIVGKIGI 110


>gi|339484293|ref|YP_004696079.1| NADH-quinone oxidoreductase subunit E [Nitrosomonas sp. Is79A3]
 gi|338806438|gb|AEJ02680.1| NADH-quinone oxidoreductase, E subunit [Nitrosomonas sp. Is79A3]
          Length = 158

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 63/109 (57%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ KR +  I+ YP   +++AV+  L +AQ + GWL    M++VA++L +P + VYE
Sbjct: 2   LSTESLKRIDREIAKYPAEQKQSAVMSALAIAQDEKGWLANETMNFVAEYLGMPPIAVYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y +  CT  PC L  S+     +KKK
Sbjct: 62  VATFYNMYNLEPVG--------KYKIMVCTNLPCALSGSNDSAAYLKKK 102


>gi|327403948|ref|YP_004344786.1| NADH dehydrogenase subunit E [Fluviicola taffensis DSM 16823]
 gi|327319456|gb|AEA43948.1| NADH dehydrogenase subunit E [Fluviicola taffensis DSM 16823]
          Length = 178

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 69/115 (60%), Gaps = 11/115 (9%)

Query: 47  EFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMRV 105
           +F+ +     +  I+++P G +++A++ +L LA+ + G WL +  M+YVA  LN+  + V
Sbjct: 16  QFSAEKMVEVQRFIAMFPEGKQKSALMRILHLAEEEFGGWLSVPTMNYVAGLLNIQPIEV 75

Query: 106 YEVATFYTMF-IRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           YEVATFYTMF I KP      K +L+     C T PC L  SD I+E I+ K ++
Sbjct: 76  YEVATFYTMFNIEKP-----GKVVLEV----CRTGPCMLVGSDQIIEHIENKLDI 121


>gi|225024121|ref|ZP_03713313.1| hypothetical protein EIKCOROL_00989 [Eikenella corrodens ATCC
           23834]
 gi|224943146|gb|EEG24355.1| hypothetical protein EIKCOROL_00989 [Eikenella corrodens ATCC
           23834]
          Length = 157

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 8/112 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VAD++ +P ++ YE
Sbjct: 2   LSAESLKQIDTELAKYPAERHRSAIMGALRIAQTEKGWLSPETIEFVADYIGIPPVQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           VATFY M+  KP+G        +Y L  CT  PC LR      E +KKK  +
Sbjct: 62  VATFYNMYDLKPVG--------KYKLTVCTNLPCALRGGVDAGEYLKKKLGI 105


>gi|54295614|ref|YP_128029.1| NADH dehydrogenase I chain E [Legionella pneumophila str. Lens]
 gi|53755446|emb|CAH16942.1| NADH dehydrogenase I chain E [Legionella pneumophila str. Lens]
          Length = 155

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 61/102 (59%), Gaps = 8/102 (7%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           IS YP   +++AV+  L + Q +HG L    M+ VA++L++P + VYEVA+FYTM+  KP
Sbjct: 13  ISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMYEHKP 72

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMML 161
           +G   I        N CT   C LR+S  ++E ++KK  + L
Sbjct: 73  VGRHLI--------NVCTNISCMLRDSAGVVEHLEKKLGVNL 106


>gi|398336137|ref|ZP_10520842.1| NADH dehydrogenase subunit I E [Leptospira kmetyi serovar Malaysia
           str. Bejo-Iso9]
          Length = 159

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 75/120 (62%), Gaps = 12/120 (10%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP-- 101
           + ++F+ +++KR + ++ ++P   +R+ ++P L + QR+HG++    M+Y+AD L  P  
Sbjct: 1   MSYKFSAESEKRFQKMLEVFP--DKRSLILPCLYILQREHGFVDQEGMNYIADRLGDPIS 58

Query: 102 KMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMML 161
             +VY VATFYT++ +KP+G        +YH+  C T+ C+L+ +D I + + +K  + L
Sbjct: 59  LAQVYGVATFYTLYNKKPVG--------KYHIQICGTSSCYLQGNDTIEKHLCEKLGIHL 110


>gi|294669096|ref|ZP_06734182.1| NADH dehydrogenase, E subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309088|gb|EFE50331.1| NADH dehydrogenase, E subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 157

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 8/112 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VAD++ +P ++ YE
Sbjct: 2   LSAESLKQIDTELAKYPAERHRSAIMGALRIAQTEKGWLAPETIEFVADYIGIPPVQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           VATFY M+  KP+G        +Y L  CT  PC LR      E +KKK  +
Sbjct: 62  VATFYNMYDLKPVG--------KYKLTVCTNLPCALRGGVDAGEYLKKKLGI 105


>gi|406942980|gb|EKD75079.1| hypothetical protein ACD_44C00233G0001 [uncultured bacterium]
          Length = 162

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 69/116 (59%), Gaps = 9/116 (7%)

Query: 45  KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKM 103
           +F  + + K++  + ++ YP    R+A++P L + Q  H G L  +A+  +AD+L LPK+
Sbjct: 4   QFVLSEEIKEKINSWLNKYPPEQVRSALLPALHIVQDAHKGSLTEAALEAIADYLQLPKV 63

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
            V+EVATFY+M+  KP+G        Q+ +N CT   C L +S+ I + +KKK  +
Sbjct: 64  AVFEVATFYSMYNLKPVG--------QHQINLCTNVSCMLNHSEKIYKHLKKKLGV 111


>gi|387128698|ref|YP_006297303.1| NADH-ubiquinone oxidoreductase subunit E [Methylophaga sp. JAM1]
 gi|386275760|gb|AFI85658.1| NADH-ubiquinone oxidoreductase chain E [Methylophaga sp. JAM1]
          Length = 170

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 62/113 (54%), Gaps = 9/113 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVY 106
           F    +++ +  IS YP G  ++AVIP L + Q  H GWL    M  +AD+L +P + V+
Sbjct: 15  FNETVRQQLDNWISKYPPGQPQSAVIPCLHILQNVHEGWLSEGLMRALADYLGIPAISVF 74

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           EVATFYTMF  KP+G+ +I        + CT   C L  S  I   I+KK  +
Sbjct: 75  EVATFYTMFELKPVGQHKI--------SLCTNISCQLCGSQDIARRIQKKLGI 119


>gi|406946614|gb|EKD77760.1| NADH dehydrogenase (ubiquinone), E subunit [uncultured bacterium]
          Length = 161

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 61/112 (54%), Gaps = 9/112 (8%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMR 104
           F  +   K+  +  +  YP    R+A+I  L  AQ Q+ G+L   AM+ VAD+L +P++ 
Sbjct: 3   FVLSEKTKQHIDHWLKKYPADQRRSAIIASLLTAQEQNNGYLSEKAMNAVADYLQIPRVE 62

Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
            YEVATFY M+  KPIG+ +I          CT   C LR SD IL   KKK
Sbjct: 63  AYEVATFYDMYHLKPIGKHKIAV--------CTNISCMLRGSDEILAHFKKK 106


>gi|329118902|ref|ZP_08247597.1| NADH-quinone oxidoreductase subunit E [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464930|gb|EGF11220.1| NADH-quinone oxidoreductase subunit E [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 157

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            TP++ K+ +  ++ YP    R+AV+  L +AQ + GWL    + +VAD++ +  +  YE
Sbjct: 2   LTPESLKQIDIELAKYPADRRRSAVMAALRIAQTEKGWLAPETIEFVADYIGIAPVAAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR      E +KKK
Sbjct: 62  VATFYNMYNLQPVG--------KYKLTVCTNLPCALRGGVDAGEYLKKK 102


>gi|416974643|ref|ZP_11937503.1| NADH dehydrogenase subunit E [Burkholderia sp. TJI49]
 gi|325520401|gb|EGC99519.1| NADH dehydrogenase subunit E [Burkholderia sp. TJI49]
          Length = 161

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 11/112 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +  K  +  ++ YP   +++AV+  L +AQ +HGWL    M +VAD+L +P + V E
Sbjct: 2   ISAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL---RNSDAILEVIKKK 156
           VATFYTM+  KP+G+ +I          CT  PC L     ++A  + +K+K
Sbjct: 62  VATFYTMYELKPVGKHKI--------TLCTNLPCQLGPHGGAEATADYLKQK 105


>gi|107023184|ref|YP_621511.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia AU 1054]
 gi|116690266|ref|YP_835889.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia HI2424]
 gi|134296429|ref|YP_001120164.1| NADH dehydrogenase subunit E [Burkholderia vietnamiensis G4]
 gi|170733605|ref|YP_001765552.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia MC0-3]
 gi|206560699|ref|YP_002231464.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia J2315]
 gi|254247661|ref|ZP_04940982.1| NADH dehydrogenase (ubiquinone) [Burkholderia cenocepacia PC184]
 gi|387902789|ref|YP_006333128.1| NADH-ubiquinone oxidoreductase subunit E [Burkholderia sp. KJ006]
 gi|421867931|ref|ZP_16299583.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia cenocepacia
           H111]
 gi|444359632|ref|ZP_21160929.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia BC7]
 gi|444369290|ref|ZP_21169051.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia
           K56-2Valvano]
 gi|105893373|gb|ABF76538.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia AU 1054]
 gi|116648355|gb|ABK08996.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia HI2424]
 gi|124872437|gb|EAY64153.1| NADH dehydrogenase (ubiquinone) [Burkholderia cenocepacia PC184]
 gi|134139586|gb|ABO55329.1| NADH dehydrogenase subunit E [Burkholderia vietnamiensis G4]
 gi|169816847|gb|ACA91430.1| NADH-quinone oxidoreductase, E subunit [Burkholderia cenocepacia
           MC0-3]
 gi|198036741|emb|CAR52641.1| putative NADH dehydrogenase I chain E [Burkholderia cenocepacia
           J2315]
 gi|358071862|emb|CCE50461.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia cenocepacia
           H111]
 gi|387577681|gb|AFJ86397.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. KJ006]
 gi|443599365|gb|ELT67654.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia
           K56-2Valvano]
 gi|443601589|gb|ELT69726.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia BC7]
          Length = 161

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 11/115 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +  K  +  ++ YP   +++AV+  L +AQ +HGWL    M +VAD+L +P + V E
Sbjct: 2   ISAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL---RNSDAILEVIKKKCNM 159
           VATFYTM+  KP+G+ +I          CT  PC L     ++A  + +K+K  +
Sbjct: 62  VATFYTMYELKPVGKHKI--------TLCTNLPCQLGPHGGAEATADYLKQKLGI 108


>gi|82702224|ref|YP_411790.1| NADH dehydrogenase subunit E [Nitrosospira multiformis ATCC 25196]
 gi|82410289|gb|ABB74398.1| NADH dehydrogenase subunit E [Nitrosospira multiformis ATCC 25196]
          Length = 158

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 63/109 (57%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP   +++AV+  L +AQ + GWL    M +VA++L +P + VYE
Sbjct: 2   LSAESLKKIDYELTKYPADQKQSAVMSALAIAQDEKGWLTTETMDFVAEYLGMPSIAVYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFYTM+  +PIG        +Y +  CT  PC L  ++  +   ++K
Sbjct: 62  VATFYTMYNLQPIG--------KYKITVCTNLPCALSGANEAVAHFREK 102


>gi|161524208|ref|YP_001579220.1| NADH dehydrogenase subunit E [Burkholderia multivorans ATCC 17616]
 gi|189351035|ref|YP_001946663.1| NADH dehydrogenase subunit E [Burkholderia multivorans ATCC 17616]
 gi|221199660|ref|ZP_03572704.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD2M]
 gi|221205440|ref|ZP_03578455.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD2]
 gi|221211739|ref|ZP_03584718.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD1]
 gi|254251865|ref|ZP_04945183.1| ATP synthase subunit E [Burkholderia dolosa AUO158]
 gi|421469602|ref|ZP_15918049.1| NADH dehydrogenase subunit E [Burkholderia multivorans ATCC
           BAA-247]
 gi|421478357|ref|ZP_15926120.1| NADH dehydrogenase subunit E [Burkholderia multivorans CF2]
 gi|124894474|gb|EAY68354.1| ATP synthase subunit E [Burkholderia dolosa AUO158]
 gi|160341637|gb|ABX14723.1| NADH-quinone oxidoreductase, E subunit [Burkholderia multivorans
           ATCC 17616]
 gi|189335057|dbj|BAG44127.1| NADH dehydrogenase I chain E [Burkholderia multivorans ATCC 17616]
 gi|221169100|gb|EEE01568.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD1]
 gi|221174278|gb|EEE06710.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD2]
 gi|221180945|gb|EEE13348.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD2M]
 gi|400224950|gb|EJO55145.1| NADH dehydrogenase subunit E [Burkholderia multivorans CF2]
 gi|400229453|gb|EJO59301.1| NADH dehydrogenase subunit E [Burkholderia multivorans ATCC
           BAA-247]
          Length = 161

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 11/115 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +  K  +  ++ YP   +++AV+  L +AQ +HGWL    M +VAD+L +P + V E
Sbjct: 2   ISAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL---RNSDAILEVIKKKCNM 159
           VATFYTM+  KP+G+ +I          CT  PC L     ++A  + +K+K  +
Sbjct: 62  VATFYTMYELKPVGKHKI--------TLCTNLPCQLGPHGGAEATADYLKQKLGI 108


>gi|167562181|ref|ZP_02355097.1| NADH dehydrogenase subunit E [Burkholderia oklahomensis EO147]
 gi|167569426|ref|ZP_02362300.1| NADH dehydrogenase subunit E [Burkholderia oklahomensis C6786]
          Length = 161

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 11/115 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +  K  +  I+ YP   +++AV+  L +AQ +HGWL    M +VAD+L +P + V E
Sbjct: 2   ISAEGLKEIDRAIAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAIAVQE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL---RNSDAILEVIKKKCNM 159
           VATFYTM+   P+G  +I          CT  PC L     ++A  E +K+K  +
Sbjct: 62  VATFYTMYELAPVGTHKI--------TLCTNLPCQLGPHGGAEATAEYLKQKLGI 108


>gi|417778796|ref|ZP_12426596.1| NADH-quinone oxidoreductase, E subunit [Leptospira weilii str.
           2006001853]
 gi|410781056|gb|EKR65635.1| NADH-quinone oxidoreductase, E subunit [Leptospira weilii str.
           2006001853]
          Length = 159

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 72/115 (62%), Gaps = 12/115 (10%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP-- 101
           + ++F+  ++KR + ++ ++P   +R+ V+P L + QR++G++    M+Y+AD L  P  
Sbjct: 1   MSYKFSDVSEKRFQKMLEVFP--DKRSLVLPCLYILQRENGFVDQDGMNYIADRLGDPIS 58

Query: 102 KMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
             +VY VATFYT++ +KP+G        +YH+  C T+ C+LR SD I + I K+
Sbjct: 59  LAQVYGVATFYTLYNKKPVG--------KYHIQICGTSSCYLRGSDEIEKHICKR 105


>gi|430762383|ref|YP_007218240.1| NADH-ubiquinone oxidoreductase chain E [Thioalkalivibrio
           nitratireducens DSM 14787]
 gi|430012007|gb|AGA34759.1| NADH-ubiquinone oxidoreductase chain E [Thioalkalivibrio
           nitratireducens DSM 14787]
          Length = 167

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 8/102 (7%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           ++ YP    R+A++  L  AQ +HG+L    M  VA++L +P M VYE ATFY+MF  +P
Sbjct: 23  LARYPDNQRRSALLGALRAAQHEHGYLSTELMDAVAEYLRIPAMDVYEAATFYSMFELEP 82

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMML 161
           +G   I          C+   C LR SDAI+E +++K  + L
Sbjct: 83  VGRHTIAV--------CSNVSCMLRGSDAIIEHLQRKLGIRL 116


>gi|350562010|ref|ZP_08930847.1| NADH-quinone oxidoreductase, E subunit [Thioalkalivibrio
           thiocyanoxidans ARh 4]
 gi|349780328|gb|EGZ34663.1| NADH-quinone oxidoreductase, E subunit [Thioalkalivibrio
           thiocyanoxidans ARh 4]
          Length = 167

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 8/102 (7%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           ++ YP    R+AV+  L  AQ +HG+L    M  VA +L +P+M VYE A+FY+MF  +P
Sbjct: 23  LARYPDDQRRSAVLGALRAAQHEHGYLSTEVMDAVAQYLRIPEMDVYEAASFYSMFELEP 82

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMML 161
           +G   I          C+   C LR SDAI+E +++K  + L
Sbjct: 83  VGRHTIAV--------CSNVSCMLRGSDAIVEHLERKLGIRL 116


>gi|397689159|ref|YP_006526413.1| NADH dehydrogenase subunit E [Melioribacter roseus P3M]
 gi|395810651|gb|AFN73400.1| NADH dehydrogenase subunit E [Melioribacter roseus P3M]
          Length = 157

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 10/111 (9%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F+FT +N KR E     YP     AAV+P + +AQ Q+G++    M  +AD L + K+ V
Sbjct: 3   FKFTEENLKRIEEERKKYP--ESLAAVMPAIYIAQEQNGYITNEVMAEIADVLGIDKVDV 60

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
             V TFYTMF  KP+G        +YH+  CT   C LR    I E +K K
Sbjct: 61  LGVVTFYTMFHTKPVG--------KYHIQVCTNVSCMLRGGYEIWEQVKNK 103


>gi|295676041|ref|YP_003604565.1| NADH-quinone oxidoreductase subunit E [Burkholderia sp. CCGE1002]
 gi|295435884|gb|ADG15054.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. CCGE1002]
          Length = 161

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 11/112 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +  K  +  ++ YP   +++AV+  L  AQ +HGWL    M +VAD+L +P + V E
Sbjct: 2   ISAEGLKEIDRAVAKYPADQKQSAVMSALATAQTEHGWLSPELMQFVADYLGMPAIAVQE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL---RNSDAILEVIKKK 156
           VATFYTM+   P+G        ++ +  CT  PC L     S++  E +K+K
Sbjct: 62  VATFYTMYETSPVG--------KFKITLCTNLPCQLGPDGGSESAAEYLKQK 105


>gi|149280566|ref|ZP_01886682.1| NADH dehydrogenase I chain E [Pedobacter sp. BAL39]
 gi|149228681|gb|EDM34084.1| NADH dehydrogenase I chain E [Pedobacter sp. BAL39]
          Length = 170

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 64/108 (59%), Gaps = 8/108 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
           F+    ++   I+S YP G  ++A++P+L   Q + GWL  +AM  VA++LN+  + VYE
Sbjct: 12  FSAALLEKCAEIVSRYPEGKHKSALLPILHEVQAELGWLSANAMDKVAEYLNIQPIEVYE 71

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
           VA+FYTM+  KP G        +Y L  C T PC L  ++ +++ +++
Sbjct: 72  VASFYTMYFLKPQG--------KYMLEICRTGPCCLVGAEKLMDHLEQ 111


>gi|373109076|ref|ZP_09523356.1| NADH-quinone oxidoreductase, E subunit [Myroides odoratimimus CCUG
           10230]
 gi|423129254|ref|ZP_17116929.1| NADH-quinone oxidoreductase, E subunit [Myroides odoratimimus CCUG
           12901]
 gi|423132917|ref|ZP_17120564.1| NADH-quinone oxidoreductase, E subunit [Myroides odoratimimus CIP
           101113]
 gi|423328528|ref|ZP_17306335.1| NADH-quinone oxidoreductase, E subunit [Myroides odoratimimus CCUG
           3837]
 gi|371645770|gb|EHO11292.1| NADH-quinone oxidoreductase, E subunit [Myroides odoratimimus CCUG
           10230]
 gi|371649017|gb|EHO14499.1| NADH-quinone oxidoreductase, E subunit [Myroides odoratimimus CCUG
           12901]
 gi|371649674|gb|EHO15151.1| NADH-quinone oxidoreductase, E subunit [Myroides odoratimimus CIP
           101113]
 gi|404604964|gb|EKB04580.1| NADH-quinone oxidoreductase, E subunit [Myroides odoratimimus CCUG
           3837]
          Length = 176

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 40/167 (23%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVY 106
            TP+ ++R + +IS YP    ++A++P+L   Q  H  WL    M  VA+ LN+  + VY
Sbjct: 12  ITPELQQRIDELISHYPADKRKSALLPVLHEVQDAHDNWLSAELMDKVAEMLNITPIEVY 71

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM------- 159
           EV TFYTM+ +KP+G        +Y   +C T+ C +R +D ++E   +K  +       
Sbjct: 72  EVVTFYTMYNQKPVG--------KYMFEFCLTSCCGIRGADDMMEYACEKLGIKPGETTP 123

Query: 160 -------------------MLE-----RQDLEPKDMEQIIDDLKAGK 182
                              M++     ++ L  + ++QII+D KAGK
Sbjct: 124 DGMFSIAGVQCLGACGYAPMMQLGDFYKEHLTKEKIDQIIEDCKAGK 170


>gi|145225064|ref|YP_001135742.1| NADH dehydrogenase subunit E [Mycobacterium gilvum PYR-GCK]
 gi|145217550|gb|ABP46954.1| NADH dehydrogenase subunit E [Mycobacterium gilvum PYR-GCK]
          Length = 287

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 81/193 (41%), Gaps = 51/193 (26%)

Query: 56  AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMF 115
           A  II+ YP    R+A++PLL L Q Q G L  + + + AD L L    V  VATFY+M+
Sbjct: 34  AATIIARYP--QTRSALLPLLHLVQAQDGCLTPAGIAFCADRLGLTDAEVTAVATFYSMY 91

Query: 116 IRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK-------------------- 155
            R P GE        Y +  CT T C +   DAILE +++                    
Sbjct: 92  RRTPTGE--------YLVGVCTNTLCAVMGGDAILESLEQHLDIAPGQTTADGRITLEHV 143

Query: 156 KCNMMLERQDL-----------EPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQ 204
           +CN   +   +            P    +++D L++G+ PAP          S+ G  C 
Sbjct: 144 ECNAACDFAPVVMVNWDFFDNQTPASARELVDGLRSGQTPAP----------SRGGSLCT 193

Query: 205 AREAYHDMTSLTG 217
            RE    +  L G
Sbjct: 194 FRETSRILAGLDG 206


>gi|386862390|ref|YP_006275339.1| NADH-ubiquinone oxidoreductase subunit E [Burkholderia pseudomallei
           1026b]
 gi|418389920|ref|ZP_12967736.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia pseudomallei
           354a]
 gi|418538027|ref|ZP_13103655.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia pseudomallei
           1026a]
 gi|418541523|ref|ZP_13107002.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia pseudomallei
           1258a]
 gi|418547767|ref|ZP_13112906.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia pseudomallei
           1258b]
 gi|418553949|ref|ZP_13118749.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia pseudomallei
           354e]
 gi|385348787|gb|EIF55383.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia pseudomallei
           1026a]
 gi|385357753|gb|EIF63790.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia pseudomallei
           1258a]
 gi|385359906|gb|EIF65853.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia pseudomallei
           1258b]
 gi|385370896|gb|EIF76118.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia pseudomallei
           354e]
 gi|385375874|gb|EIF80611.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia pseudomallei
           354a]
 gi|385659518|gb|AFI66941.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia pseudomallei
           1026b]
          Length = 168

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 11/112 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +  K  +  I+ YP   +++AV+  L +AQ +HGWL    M +VAD+L +P + V E
Sbjct: 9   ISAEGLKEIDRAIAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAIAVQE 68

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL---RNSDAILEVIKKK 156
           VATFYTM+   P+G+ +I          CT  PC L     ++A  + +K+K
Sbjct: 69  VATFYTMYELAPVGKHKI--------TLCTNLPCQLGPHGGAEATADYLKQK 112


>gi|406935034|gb|EKD69120.1| NADH-quinone oxidoreductase, E subunit [uncultured bacterium]
          Length = 156

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 66/113 (58%), Gaps = 10/113 (8%)

Query: 47  EFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106
           +F+ +N+KR + + S YP  ++ A+++ +L +A  + G L   A  Y+++   +PK RVY
Sbjct: 3   KFSEENEKRVQNLQSRYP--NKEASLLTVLHMANDEFGHLDDEAYSYISELTGVPKSRVY 60

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
            VATFY+M+ +KP+G        +YHL  C    C L  +D IL+ I  K N+
Sbjct: 61  SVATFYSMYDQKPVG--------RYHLQLCKNISCMLAGADDILKHICGKLNI 105


>gi|390572965|ref|ZP_10253157.1| NADH dehydrogenase subunit E [Burkholderia terrae BS001]
 gi|420253865|ref|ZP_14756899.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. BT03]
 gi|389935083|gb|EIM97019.1| NADH dehydrogenase subunit E [Burkholderia terrae BS001]
 gi|398050741|gb|EJL43091.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. BT03]
          Length = 161

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 11/112 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +  K  +  I+ YP   +++AV+  L + Q + GWL    M +VAD+L +P + V E
Sbjct: 2   ISAEGLKEIDRAIAKYPADQKQSAVMSALAVGQEELGWLSPELMQFVADYLGMPAVAVQE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL---RNSDAILEVIKKK 156
           VATFYTM+   P+G        +Y +  CT  PC L     SD+  E +K+K
Sbjct: 62  VATFYTMYETSPVG--------KYKITLCTNLPCQLGPDGGSDSAAEYLKQK 105


>gi|406998655|gb|EKE16567.1| hypothetical protein ACD_10C00911G0003 [uncultured bacterium]
          Length = 157

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
           F+P+  ++    ++ YP   +++AV+  L  AQ + GWLP   +  VA++L++P M  YE
Sbjct: 2   FSPETLQKFAREVAKYPAAQKQSAVMACLAHAQEERGWLPQDVIEAVANYLDMPPMAAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VA+FY M+  KP+G        +Y +  CT  PC L       E ++KK
Sbjct: 62  VASFYNMYDLKPVG--------KYKIMVCTNLPCALSGGYHAGEYVQKK 102


>gi|398341333|ref|ZP_10526036.1| NADH dehydrogenase subunit I E [Leptospira kirschneri serovar Bim
           str. 1051]
 gi|418678595|ref|ZP_13239869.1| NADH-quinone oxidoreductase, E subunit [Leptospira kirschneri
           serovar Grippotyphosa str. RM52]
 gi|418686467|ref|ZP_13247633.1| NADH-quinone oxidoreductase, E subunit [Leptospira kirschneri
           serovar Grippotyphosa str. Moskva]
 gi|418694060|ref|ZP_13255104.1| NADH-quinone oxidoreductase, E subunit [Leptospira kirschneri str.
           H1]
 gi|421088221|ref|ZP_15549049.1| NADH-quinone oxidoreductase, E subunit [Leptospira kirschneri str.
           200802841]
 gi|400321785|gb|EJO69645.1| NADH-quinone oxidoreductase, E subunit [Leptospira kirschneri
           serovar Grippotyphosa str. RM52]
 gi|409958071|gb|EKO16968.1| NADH-quinone oxidoreductase, E subunit [Leptospira kirschneri str.
           H1]
 gi|410003206|gb|EKO53652.1| NADH-quinone oxidoreductase, E subunit [Leptospira kirschneri str.
           200802841]
 gi|410738900|gb|EKQ83632.1| NADH-quinone oxidoreductase, E subunit [Leptospira kirschneri
           serovar Grippotyphosa str. Moskva]
          Length = 159

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 71/115 (61%), Gaps = 12/115 (10%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP-- 101
           + ++F+  ++KR + ++  +P   +R+ ++P L + QR++G++    M+Y+A+ L  P  
Sbjct: 1   MSYKFSETSEKRFQKMLEAFP--DKRSLILPCLYILQRENGFVDQEGMNYIAERLGDPIS 58

Query: 102 KMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
             +VY VATFYT++ +KP+G        +YH+  C T+ C+LR SD I E I K+
Sbjct: 59  LAQVYGVATFYTLYNKKPVG--------KYHIQICGTSSCYLRGSDEIEEHICKR 105


>gi|53718851|ref|YP_107837.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei K96243]
 gi|53725815|ref|YP_103430.1| NADH dehydrogenase subunit E [Burkholderia mallei ATCC 23344]
 gi|76812174|ref|YP_332848.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 1710b]
 gi|83720126|ref|YP_441618.1| NADH dehydrogenase subunit E [Burkholderia thailandensis E264]
 gi|121599466|ref|YP_992473.1| NADH dehydrogenase subunit E [Burkholderia mallei SAVP1]
 gi|124383870|ref|YP_001026724.1| NADH dehydrogenase subunit E [Burkholderia mallei NCTC 10229]
 gi|126439317|ref|YP_001058342.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 668]
 gi|126449336|ref|YP_001079991.1| NADH dehydrogenase subunit E [Burkholderia mallei NCTC 10247]
 gi|126454652|ref|YP_001065581.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 1106a]
 gi|134283919|ref|ZP_01770615.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 305]
 gi|167000364|ref|ZP_02266182.1| NADH dehydrogenase I, E subunit [Burkholderia mallei PRL-20]
 gi|167580426|ref|ZP_02373300.1| NADH dehydrogenase subunit E [Burkholderia thailandensis TXDOH]
 gi|167618535|ref|ZP_02387166.1| NADH dehydrogenase subunit E [Burkholderia thailandensis Bt4]
 gi|167718847|ref|ZP_02402083.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei DM98]
 gi|167737856|ref|ZP_02410630.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 14]
 gi|167815040|ref|ZP_02446720.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 91]
 gi|167823456|ref|ZP_02454927.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 9]
 gi|167845008|ref|ZP_02470516.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei B7210]
 gi|167893549|ref|ZP_02480951.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 7894]
 gi|167901995|ref|ZP_02489200.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei NCTC 13177]
 gi|167910231|ref|ZP_02497322.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 112]
 gi|167918264|ref|ZP_02505355.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei BCC215]
 gi|217419497|ref|ZP_03451003.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 576]
 gi|226195406|ref|ZP_03790995.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|237811586|ref|YP_002896037.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei MSHR346]
 gi|238562075|ref|ZP_00440948.2| NADH-ubiquinone oxidoreductase 24 kda subunit [Burkholderia mallei
           GB8 horse 4]
 gi|242314477|ref|ZP_04813493.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 1106b]
 gi|254175344|ref|ZP_04882004.1| NADH dehydrogenase I, E subunit [Burkholderia mallei ATCC 10399]
 gi|254181183|ref|ZP_04887780.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           1655]
 gi|254190546|ref|ZP_04897053.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254195089|ref|ZP_04901518.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           S13]
 gi|254202106|ref|ZP_04908469.1| NADH dehydrogenase I, E subunit [Burkholderia mallei FMH]
 gi|254207436|ref|ZP_04913786.1| NADH dehydrogenase I, E subunit [Burkholderia mallei JHU]
 gi|254260117|ref|ZP_04951171.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           1710a]
 gi|254298537|ref|ZP_04965989.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           406e]
 gi|254359858|ref|ZP_04976128.1| NADH dehydrogenase I, E subunit [Burkholderia mallei 2002721280]
 gi|257139686|ref|ZP_05587948.1| NADH dehydrogenase subunit E [Burkholderia thailandensis E264]
 gi|403518008|ref|YP_006652141.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei BPC006]
 gi|52209265|emb|CAH35210.1| putative NADH dehydrogenase I chain E [Burkholderia pseudomallei
           K96243]
 gi|52429238|gb|AAU49831.1| NADH dehydrogenase I, E subunit [Burkholderia mallei ATCC 23344]
 gi|76581627|gb|ABA51102.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit [Burkholderia
           pseudomallei 1710b]
 gi|83653951|gb|ABC38014.1| NADH dehydrogenase I, E subunit [Burkholderia thailandensis E264]
 gi|121228276|gb|ABM50794.1| NADH dehydrogenase I, E subunit [Burkholderia mallei SAVP1]
 gi|124291890|gb|ABN01159.1| NADH dehydrogenase I, E subunit [Burkholderia mallei NCTC 10229]
 gi|126218810|gb|ABN82316.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           668]
 gi|126228294|gb|ABN91834.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 1106a]
 gi|126242206|gb|ABO05299.1| NADH dehydrogenase I, E subunit [Burkholderia mallei NCTC 10247]
 gi|134244708|gb|EBA44806.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 305]
 gi|147746353|gb|EDK53430.1| NADH dehydrogenase I, E subunit [Burkholderia mallei FMH]
 gi|147751330|gb|EDK58397.1| NADH dehydrogenase I, E subunit [Burkholderia mallei JHU]
 gi|148029098|gb|EDK87003.1| NADH dehydrogenase I, E subunit [Burkholderia mallei 2002721280]
 gi|157808346|gb|EDO85516.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           406e]
 gi|157938221|gb|EDO93891.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160696388|gb|EDP86358.1| NADH dehydrogenase I, E subunit [Burkholderia mallei ATCC 10399]
 gi|169651837|gb|EDS84530.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           S13]
 gi|184211721|gb|EDU08764.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           1655]
 gi|217396801|gb|EEC36817.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 576]
 gi|225932608|gb|EEH28606.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|237505219|gb|ACQ97537.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Burkholderia
           pseudomallei MSHR346]
 gi|238523284|gb|EEP86723.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Burkholderia mallei
           GB8 horse 4]
 gi|242137716|gb|EES24118.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 1106b]
 gi|243063698|gb|EES45884.1| NADH dehydrogenase I, E subunit [Burkholderia mallei PRL-20]
 gi|254218806|gb|EET08190.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           1710a]
 gi|403073651|gb|AFR15231.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei BPC006]
          Length = 161

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 11/115 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +  K  +  I+ YP   +++AV+  L +AQ +HGWL    M +VAD+L +P + V E
Sbjct: 2   ISAEGLKEIDRAIAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAIAVQE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL---RNSDAILEVIKKKCNM 159
           VATFYTM+   P+G+ +I          CT  PC L     ++A  + +K+K  +
Sbjct: 62  VATFYTMYELAPVGKHKI--------TLCTNLPCQLGPHGGAEATADYLKQKLGI 108


>gi|344200638|ref|YP_004784964.1| NADH-quinone oxidoreductase subunit E [Acidithiobacillus
           ferrivorans SS3]
 gi|343776082|gb|AEM48638.1| NADH-quinone oxidoreductase, E subunit [Acidithiobacillus
           ferrivorans SS3]
          Length = 163

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 8/99 (8%)

Query: 63  YPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGE 122
           YP    R+A++  L +AQ + G+L  + M YVAD L LP +  YEVATFYTM+  +P+G 
Sbjct: 17  YPAEQARSALLAALRIAQEEQGYLSEALMAYVADLLGLPAIHAYEVATFYTMYDLRPVGR 76

Query: 123 ERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMML 161
            +        L  C +  C+L  SDA+++ + ++  + L
Sbjct: 77  HK--------LCVCGSVSCFLNGSDAVIKHLSERLGIGL 107


>gi|418740958|ref|ZP_13297334.1| NADH-quinone oxidoreductase, E subunit [Leptospira kirschneri
           serovar Valbuzzi str. 200702274]
 gi|421109056|ref|ZP_15569583.1| NADH-quinone oxidoreductase, E subunit [Leptospira kirschneri str.
           H2]
 gi|410005823|gb|EKO59607.1| NADH-quinone oxidoreductase, E subunit [Leptospira kirschneri str.
           H2]
 gi|410751553|gb|EKR08530.1| NADH-quinone oxidoreductase, E subunit [Leptospira kirschneri
           serovar Valbuzzi str. 200702274]
          Length = 161

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 71/115 (61%), Gaps = 12/115 (10%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP-- 101
           + ++F+  ++KR + ++  +P   +R+ ++P L + QR++G++    M+Y+A+ L  P  
Sbjct: 3   MSYKFSETSEKRFQKMLEAFP--DKRSLILPCLYILQRENGFVDQEGMNYIAERLGDPIS 60

Query: 102 KMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
             +VY VATFYT++ +KP+G        +YH+  C T+ C+LR SD I E I K+
Sbjct: 61  LAQVYGVATFYTLYNKKPVG--------KYHIQICGTSSCYLRGSDEIEEHICKR 107


>gi|410694432|ref|YP_003625054.1| putative NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thiomonas
           sp. 3As]
 gi|294340857|emb|CAZ89252.1| putative NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thiomonas
           sp. 3As]
          Length = 170

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 8/114 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            +   ++R +  ++ YP   +++AVI  L + Q++ GW+   A   VAD+L +P + V+E
Sbjct: 6   LSESTRQRIDLEVAKYPPEQKQSAVIAALSIVQQEQGWVSPEAEKAVADYLGMPPIAVHE 65

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMML 161
           V TFY MF  +P+G        ++ LN CT  PC L   +A  + + +K  + L
Sbjct: 66  VVTFYNMFNTRPVG--------RFKLNVCTNLPCALSGGEAAAQYLSEKLGVAL 111


>gi|296136702|ref|YP_003643944.1| hypothetical protein Tint_2264 [Thiomonas intermedia K12]
 gi|295796824|gb|ADG31614.1| hypothetical protein Tint_2264 [Thiomonas intermedia K12]
          Length = 179

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 8/114 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            +   ++R +  ++ YP   +++AVI  L + Q++ GW+   A   VAD+L +P + V+E
Sbjct: 15  LSESTRQRIDLEVAKYPPEQKQSAVIAALSIVQQEQGWVSPEAEKAVADYLGMPPIAVHE 74

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMML 161
           V TFY MF  +P+G        ++ LN CT  PC L   +A  + + +K  + L
Sbjct: 75  VVTFYNMFNTRPVG--------RFKLNVCTNLPCALSGGEAAAQYLSEKLGVAL 120


>gi|384171270|ref|YP_005552647.1| NADH-quinone oxidoreductase E subunit [Arcobacter sp. L]
 gi|345470880|dbj|BAK72330.1| NADH-quinone oxidoreductase E subunit [Arcobacter sp. L]
          Length = 161

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 10/110 (9%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           FE+TP+N+ + +  +S YP     + ++P L L Q Q GW+   AM Y+A  L    ++V
Sbjct: 4   FEYTPENEIKFQEYVSRYP--KIDSCMLPALWLVQEQIGWVSPEAMIYIAQKLGKTPIQV 61

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
           YEVATFYTMF  KPIG        +YH+  C T  C L  S  + + IK+
Sbjct: 62  YEVATFYTMFNLKPIG--------KYHIELCKTVSCMLCGSRELKKHIKE 103


>gi|255533959|ref|YP_003094331.1| NADH-quinone oxidoreductase subunit E [Pedobacter heparinus DSM
           2366]
 gi|255346943|gb|ACU06269.1| NADH-quinone oxidoreductase, E subunit [Pedobacter heparinus DSM
           2366]
          Length = 170

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 64/113 (56%), Gaps = 8/113 (7%)

Query: 47  EFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106
           EF+P    + + I+  YP G  ++A++P+L   Q + GWL  +AM  VA +L++  + VY
Sbjct: 11  EFSPALLTKFDEIVKRYPEGKHKSALLPILHEVQAELGWLSAAAMDKVAAYLDIQDIEVY 70

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           EVA+FY+M+  KP G        +Y L  C T PC L  ++ ++  I+ K  +
Sbjct: 71  EVASFYSMYFLKPQG--------KYVLEVCRTGPCCLVGAEKLMGHIENKLGV 115


>gi|238062215|ref|ZP_04606924.1| NADH-quinone oxidoreductase, E subunit [Micromonospora sp. ATCC
           39149]
 gi|237884026|gb|EEP72854.1| NADH-quinone oxidoreductase, E subunit [Micromonospora sp. ATCC
           39149]
          Length = 295

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 8/108 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
           FT   ++RA  II+ YP    R+A++PLL L Q + G++  S + + A+ L L K +V  
Sbjct: 4   FTEQTRERAREIIARYPADRSRSALLPLLHLVQSEEGYVSPSGVEFCAEVLGLNKAQVGA 63

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
           VATFYTM+ RKP G+        Y ++ CT T C +     + + + +
Sbjct: 64  VATFYTMYKRKPTGD--------YLVSVCTNTMCNVLGGQEVYDTLAE 103


>gi|167836053|ref|ZP_02462936.1| NADH dehydrogenase subunit E [Burkholderia thailandensis MSMB43]
 gi|424902725|ref|ZP_18326241.1| NADH dehydrogenase subunit E [Burkholderia thailandensis MSMB43]
 gi|390933100|gb|EIP90500.1| NADH dehydrogenase subunit E [Burkholderia thailandensis MSMB43]
          Length = 161

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 62/115 (53%), Gaps = 11/115 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +  K  +  I+ YP   +++AV+  L +AQ +HGWL    M +VAD+L +P + V E
Sbjct: 2   ISAEGLKEIDRAIAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAIAVQE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL---RNSDAILEVIKKKCNM 159
           VATFYTM+   P+G+ +I          CT  PC L     ++A    +K+K  +
Sbjct: 62  VATFYTMYELAPVGKHKI--------TLCTNLPCQLGPHGGAEATAAYLKQKLGI 108


>gi|421131343|ref|ZP_15591525.1| NADH-quinone oxidoreductase, E subunit [Leptospira kirschneri str.
           2008720114]
 gi|410357126|gb|EKP04393.1| NADH-quinone oxidoreductase, E subunit [Leptospira kirschneri str.
           2008720114]
          Length = 161

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 70/115 (60%), Gaps = 12/115 (10%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP-- 101
           + ++F+  ++KR + ++  +P   +R+ ++P L + QR++G++    M Y+A+ L  P  
Sbjct: 3   MSYKFSETSEKRFQKMLEAFP--DKRSLILPCLYILQRENGFVDQEGMSYIAERLGDPIS 60

Query: 102 KMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
             +VY VATFYT++ +KP+G        +YH+  C T+ C+LR SD I E I K+
Sbjct: 61  LAQVYGVATFYTLYNKKPVG--------KYHIQICGTSSCYLRGSDEIEEHICKR 107


>gi|78067042|ref|YP_369811.1| NADH dehydrogenase subunit E [Burkholderia sp. 383]
 gi|170698113|ref|ZP_02889193.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria
           IOP40-10]
 gi|77967787|gb|ABB09167.1| NADH dehydrogenase subunit E [Burkholderia sp. 383]
 gi|170136971|gb|EDT05219.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria
           IOP40-10]
          Length = 161

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 11/112 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +  K  +  ++ YP   +++AV+  L +AQ +HGWL    M +VAD+L +P + V E
Sbjct: 2   ISAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL---RNSDAILEVIKKK 156
           VATFYTM+   P+G+ +I          CT  PC L     ++A  + +K+K
Sbjct: 62  VATFYTMYELNPVGKHKI--------TLCTNLPCQLGPDGGAEATADYLKQK 105


>gi|115352334|ref|YP_774173.1| NADH dehydrogenase subunit E [Burkholderia ambifaria AMMD]
 gi|171316307|ref|ZP_02905528.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria
           MEX-5]
 gi|172061205|ref|YP_001808857.1| NADH dehydrogenase subunit E [Burkholderia ambifaria MC40-6]
 gi|402565959|ref|YP_006615304.1| NADH dehydrogenase subunit E [Burkholderia cepacia GG4]
 gi|115282322|gb|ABI87839.1| NADH dehydrogenase subunit E [Burkholderia ambifaria AMMD]
 gi|171098533|gb|EDT43334.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria
           MEX-5]
 gi|171993722|gb|ACB64641.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria
           MC40-6]
 gi|402247156|gb|AFQ47610.1| NADH dehydrogenase subunit E [Burkholderia cepacia GG4]
          Length = 161

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 11/112 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + +  K  +  ++ YP   +++AV+  L +AQ +HGWL    M +VAD+L +P + V E
Sbjct: 2   ISAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL---RNSDAILEVIKKK 156
           VATFYTM+   P+G+ +I          CT  PC L     ++A  + +K+K
Sbjct: 62  VATFYTMYELNPVGKHKI--------TLCTNLPCQLGPHGGAEATADYLKQK 105


>gi|319638818|ref|ZP_07993576.1| NADH dehydrogenase subunit I E [Neisseria mucosa C102]
 gi|317399722|gb|EFV80385.1| NADH dehydrogenase subunit I E [Neisseria mucosa C102]
          Length = 157

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VAD++ +   + YE
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR   A  E +KKK
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGMATGEYLKKK 102


>gi|315445433|ref|YP_004078312.1| NADH dehydrogenase subunit E [Mycobacterium gilvum Spyr1]
 gi|315263736|gb|ADU00478.1| NADH dehydrogenase subunit E [Mycobacterium gilvum Spyr1]
          Length = 286

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 81/193 (41%), Gaps = 51/193 (26%)

Query: 56  AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMF 115
           AE II+ YP    R+A++PLL L Q Q G L  + + + A  L L    V  VATFY+M+
Sbjct: 34  AETIIARYP--QTRSALLPLLHLVQAQDGCLTPAGIAFCAHRLGLTDAEVTAVATFYSMY 91

Query: 116 IRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK-------------------- 155
            R P GE        Y +  CT T C +   DAILE +++                    
Sbjct: 92  RRTPTGE--------YLVGVCTNTLCAVMGGDAILESLEQHLDIAPGQTTADGRITLEHV 143

Query: 156 KCNMMLERQDL-----------EPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQ 204
           +CN   +   +            P    +++D L++G+ PAP          S+ G  C 
Sbjct: 144 ECNAACDFAPVVMVNWDFFDNQTPASARELVDGLRSGQTPAP----------SRGGSLCT 193

Query: 205 AREAYHDMTSLTG 217
            RE    +  L G
Sbjct: 194 FRETSRILAGLDG 206


>gi|72163090|ref|YP_290747.1| NADH dehydrogenase subunit E [Thermobifida fusca YX]
 gi|71916822|gb|AAZ56724.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermobifida fusca
           YX]
          Length = 239

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 47/179 (26%)

Query: 48  FTPDNKKR----AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
           F+ +N+ R    A+ IIS YP    R+A++PLL L Q + G++    + + A+ L L   
Sbjct: 11  FSGENRARLELDAKEIISRYP--KARSALLPLLHLVQSEEGYVSNDGIAFCAEQLGLTTA 68

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK-------- 155
            V  VATFYTM+ R+P+GE        YH+  CT   C +   D I   +K+        
Sbjct: 69  EVTAVATFYTMYKRRPVGE--------YHVGVCTNPLCAVMGGDEIYSALKEHLGVENDG 120

Query: 156 ------------KCN--------MMLERQDLE---PKDMEQIIDDLKAGK--KPAPGPS 189
                       +CN        +M+  +  +   P+ M++I+DDL+ GK  KP  GP+
Sbjct: 121 VTEDGKISLEHVECNAACDFAPVVMINWEFFDNQTPESMKKIVDDLRLGKDVKPTRGPN 179


>gi|330465206|ref|YP_004402949.1| NADH dehydrogenase subunit E [Verrucosispora maris AB-18-032]
 gi|328808177|gb|AEB42349.1| NADH dehydrogenase subunit E [Verrucosispora maris AB-18-032]
          Length = 345

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 49/205 (23%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
           FT + + RA  II+ YP    R+A++PLL L Q + G++  + + + A+ L L K +V  
Sbjct: 5   FTDETRARAREIIARYPADRSRSALLPLLHLVQSEEGYVSPAGVAFCAEVLGLNKAQVGA 64

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN--------- 158
           VA+FYTM+ R+P G+        Y ++ CT T C +     + + + +            
Sbjct: 65  VASFYTMYKRRPTGD--------YLVSVCTNTMCNVLGGQEVYDTLAEHLGVGHDETTED 116

Query: 159 --MMLERQD--------------------LEPKDMEQIIDDLKAGKKPAPGPSGYTSGIG 196
             + LE  +                    ++P+    ++D+L+AG +P P          
Sbjct: 117 GKITLEHAECLAACDYGPVMTVNYDFFDGVDPQGAVGLVDELRAGNRPTP---------- 166

Query: 197 SQSGRFCQAREAYHDMTSLTGEPHG 221
           S+  R C  +E    +     E  G
Sbjct: 167 SRGARLCTLKEMSVQLAGFADEREG 191


>gi|417760649|ref|ZP_12408666.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans str.
           2002000624]
 gi|417766058|ref|ZP_12414012.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Bulgarica str. Mallika]
 gi|417772032|ref|ZP_12419922.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Pomona str. Pomona]
 gi|417773175|ref|ZP_12421059.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans str.
           2002000621]
 gi|417784628|ref|ZP_12432334.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans str.
           C10069]
 gi|418670579|ref|ZP_13231950.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Pyrogenes str. 2006006960]
 gi|418673852|ref|ZP_13235163.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans str.
           2002000623]
 gi|418680568|ref|ZP_13241817.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Pomona str. Kennewicki LC82-25]
 gi|418690365|ref|ZP_13251481.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans str.
           FPW2026]
 gi|418710480|ref|ZP_13271251.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Grippotyphosa str. UI 08368]
 gi|418713537|ref|ZP_13274263.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans str.
           UI 08452]
 gi|418729557|ref|ZP_13288104.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans str.
           UI 12758]
 gi|421085382|ref|ZP_15546235.1| NADH-quinone oxidoreductase, E subunit [Leptospira santarosai str.
           HAI1594]
 gi|421103582|ref|ZP_15564179.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Icterohaemorrhagiae str. Verdun LP]
 gi|421121353|ref|ZP_15581650.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans str.
           Brem 329]
 gi|421128016|ref|ZP_15588234.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Grippotyphosa str. 2006006986]
 gi|421133352|ref|ZP_15593500.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Grippotyphosa str. Andaman]
 gi|400327926|gb|EJO80166.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Pomona str. Kennewicki LC82-25]
 gi|400351512|gb|EJP03731.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Bulgarica str. Mallika]
 gi|400360550|gb|EJP16522.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans str.
           FPW2026]
 gi|409943569|gb|EKN89169.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans str.
           2002000624]
 gi|409945989|gb|EKN96003.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Pomona str. Pomona]
 gi|409952445|gb|EKO06958.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans str.
           C10069]
 gi|410022360|gb|EKO89137.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Grippotyphosa str. Andaman]
 gi|410345787|gb|EKO96857.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans str.
           Brem 329]
 gi|410366545|gb|EKP21936.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Icterohaemorrhagiae str. Verdun LP]
 gi|410432018|gb|EKP76376.1| NADH-quinone oxidoreductase, E subunit [Leptospira santarosai str.
           HAI1594]
 gi|410434483|gb|EKP83621.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Grippotyphosa str. 2006006986]
 gi|410577016|gb|EKQ40014.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans str.
           2002000621]
 gi|410579130|gb|EKQ46980.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans str.
           2002000623]
 gi|410753961|gb|EKR15619.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Pyrogenes str. 2006006960]
 gi|410769416|gb|EKR44658.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Grippotyphosa str. UI 08368]
 gi|410775735|gb|EKR55726.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans str.
           UI 12758]
 gi|410790012|gb|EKR83707.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans str.
           UI 08452]
 gi|455667639|gb|EMF32935.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Pomona str. Fox 32256]
 gi|455790910|gb|EMF42752.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Lora str. TE 1992]
 gi|456824687|gb|EMF73113.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Canicola str. LT1962]
 gi|456968300|gb|EMG09525.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Grippotyphosa str. LT2186]
 gi|456986277|gb|EMG21877.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Copenhageni str. LT2050]
          Length = 159

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 70/113 (61%), Gaps = 12/113 (10%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP--KM 103
           ++F+  ++KR + ++  +P   +R+ ++P L + QR++G++    M+Y+A+ +  P    
Sbjct: 3   YKFSETSEKRFQKMLEAFP--DKRSLILPCLYILQRENGFVDQEGMNYIAERIGDPISLA 60

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           +VY VATFYT++ +KP+G        +YH+  C T+ C+LR SD I E I K+
Sbjct: 61  QVYGVATFYTLYNKKPVG--------KYHIQICGTSSCYLRGSDEIEEHICKR 105


>gi|374584325|ref|ZP_09657417.1| NADH dehydrogenase subunit E [Leptonema illini DSM 21528]
 gi|373873186|gb|EHQ05180.1| NADH dehydrogenase subunit E [Leptonema illini DSM 21528]
          Length = 160

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 10/106 (9%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
           K  E I + YP    RA ++P L LA R+ GW+    M Y+A  + +P  RVYEVATFYT
Sbjct: 11  KEFEEIATHYP--DRRATLLPALWLASREFGWVSEETMEYLAGLVGVPFARVYEVATFYT 68

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           M+ R   G        ++HL  C T  C LR +D I + I++K  +
Sbjct: 69  MYQRTKPG--------KFHLQVCQTLSCHLRGADEIKQFIEEKLGL 106


>gi|416167968|ref|ZP_11607798.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           OX99.30304]
 gi|325130974|gb|EGC53701.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           OX99.30304]
          Length = 157

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VAD++ +   + YE
Sbjct: 2   LSTESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR   A  E +KKK
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGMATGEYLKKK 102


>gi|421568427|ref|ZP_16014150.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis NM3001]
 gi|402341369|gb|EJU76548.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis NM3001]
          Length = 157

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VAD++ +  ++ YE
Sbjct: 2   LSAESLKQIDTELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPVQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR   A  E +K+K
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGMATGEYLKQK 102


>gi|320160243|ref|YP_004173467.1| NADH-quinone oxidoreductase subunit E [Anaerolinea thermophila
           UNI-1]
 gi|319994096|dbj|BAJ62867.1| NADH-quinone oxidoreductase chain E [Anaerolinea thermophila UNI-1]
          Length = 173

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 63/113 (55%), Gaps = 8/113 (7%)

Query: 47  EFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106
           E   +  +  + I++ YP  ++R+AV+PLL LAQR+ G++P  A+  +A+ L +    V 
Sbjct: 3   ELLQNYPEEVKQILAKYPAEYKRSAVMPLLYLAQRKEGYVPRQALEDIAEILEMSPTEVA 62

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
            +  FYT++  +P G        +YH+  CT  PC LR +D  LE + ++  +
Sbjct: 63  SIVGFYTLYYDQPAG--------RYHIQVCTDLPCALRGADKFLEELCQRLGI 107


>gi|45658579|ref|YP_002665.1| NADH dehydrogenase subunit I E [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601823|gb|AAS71302.1| NADH dehydrogenase I E subunit [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 161

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 70/113 (61%), Gaps = 12/113 (10%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP--KM 103
           ++F+  ++KR + ++  +P   +R+ ++P L + QR++G++    M+Y+A+ +  P    
Sbjct: 5   YKFSETSEKRFQKMLEAFP--DKRSLILPCLYILQRENGFVDQEGMNYIAERIGDPISLA 62

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           +VY VATFYT++ +KP+G        +YH+  C T+ C+LR SD I E I K+
Sbjct: 63  QVYGVATFYTLYNKKPVG--------KYHIQICGTSSCYLRGSDEIEEHICKR 107


>gi|270158110|ref|ZP_06186767.1| NADH-quinone oxidoreductase E subunit [Legionella longbeachae
           D-4968]
 gi|289163625|ref|YP_003453763.1| NADH dehydrogenase I chain E [Legionella longbeachae NSW150]
 gi|269990135|gb|EEZ96389.1| NADH-quinone oxidoreductase E subunit [Legionella longbeachae
           D-4968]
 gi|288856798|emb|CBJ10609.1| NADH dehydrogenase I chain E [Legionella longbeachae NSW150]
          Length = 167

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 63/102 (61%), Gaps = 8/102 (7%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           I+ YP+  +++AV+  L +AQ +HG+L    M  +AD+L++P + VYEVA+FYTM+  K 
Sbjct: 25  IAKYPMEQKQSAVMSALRIAQEEHGYLTNELMDAIADYLDMPPIAVYEVASFYTMYEHKQ 84

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMML 161
           +G   I        N CT   C L +S A+++ ++KK ++ L
Sbjct: 85  VGRHLI--------NVCTNISCMLCDSAAVVKHLEKKLDIKL 118


>gi|294827752|ref|NP_711072.2| NADH dehydrogenase (ubiquinone) chain E [Leptospira interrogans
           serovar Lai str. 56601]
 gi|386073201|ref|YP_005987518.1| NADH dehydrogenase (ubiquinone) chain E [Leptospira interrogans
           serovar Lai str. IPAV]
 gi|293385595|gb|AAN48090.2| NADH dehydrogenase (ubiquinone) chain E [Leptospira interrogans
           serovar Lai str. 56601]
 gi|353456990|gb|AER01535.1| NADH dehydrogenase (ubiquinone) chain E [Leptospira interrogans
           serovar Lai str. IPAV]
          Length = 159

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 70/113 (61%), Gaps = 12/113 (10%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP--KM 103
           ++F+  ++KR + ++  +P   +R+ ++P L + QR++G++    M+Y+A+ +  P    
Sbjct: 3   YKFSETSEKRFQKMLKAFP--DKRSLILPCLYILQRENGFVDQEGMNYIAERIGDPISLA 60

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           +VY VATFYT++ +KP+G        +YH+  C T+ C+LR SD I E I K+
Sbjct: 61  QVYGVATFYTLYNKKPVG--------KYHIQICGTSSCYLRGSDEIEEHICKR 105


>gi|374263778|ref|ZP_09622325.1| NADH dehydrogenase I, E subunit [Legionella drancourtii LLAP12]
 gi|363535900|gb|EHL29347.1| NADH dehydrogenase I, E subunit [Legionella drancourtii LLAP12]
          Length = 167

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 8/102 (7%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           I+ YP   +++AV+  L + Q +H  L +  M  +AD+L +P + VYEVA+FYTM+  KP
Sbjct: 25  IAKYPADQKQSAVMSALRIVQEEHNHLTMELMDAIADYLEMPPIAVYEVASFYTMYEHKP 84

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMML 161
           +G   +        N CT   C LR+S  +++ ++KK  + L
Sbjct: 85  VGTHLV--------NVCTNISCMLRDSAGVVDHLQKKLGIKL 118


>gi|386384084|ref|ZP_10069500.1| NADH dehydrogenase subunit E [Streptomyces tsukubaensis NRRL18488]
 gi|385668444|gb|EIF91771.1| NADH dehydrogenase subunit E [Streptomyces tsukubaensis NRRL18488]
          Length = 266

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 41/157 (26%)

Query: 56  AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMF 115
           A+ II+ YP    R+A++PLL L Q + G++  + M + AD L+L    V  VATFY+M+
Sbjct: 34  AQEIIARYP--DSRSALLPLLHLVQSEEGYVSRTGMRFCADILDLTTAEVTAVATFYSMY 91

Query: 116 IRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK-------------------- 155
            R+P G+        Y +  CT T C +   DAI E +K+                    
Sbjct: 92  RRRPSGD--------YQVGVCTNTLCAVMGGDAIFETLKEHLGVGNNETTDDGAVTLEHI 143

Query: 156 KCNMMLERQDL-----------EPKDMEQIIDDLKAG 181
           +CN   +   +            P+  +Q++DDL+AG
Sbjct: 144 ECNAACDFAPVVMVNWEFFDNQTPESAKQLVDDLRAG 180


>gi|159039971|ref|YP_001539224.1| NADH dehydrogenase subunit E [Salinispora arenicola CNS-205]
 gi|157918806|gb|ABW00234.1| NADH-quinone oxidoreductase, E subunit [Salinispora arenicola
           CNS-205]
          Length = 305

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 49/205 (23%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
           F+ + + RA  II+ YP    R+A++PLL L Q + G++  + + + A+ L L K +V  
Sbjct: 4   FSEETRARAREIIARYPADRSRSALLPLLHLVQSEEGYVSPAGIAFCAEVLGLNKAQVGA 63

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER---- 163
           VA+FYTM+ R+P G+        + ++ CT T C +     + + + +   +  E     
Sbjct: 64  VASFYTMYKRRPTGD--------WLVSVCTNTMCNVLGGQEVYDTLAEHLGVGHEETTAD 115

Query: 164 ---------------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIG 196
                                       +++P+    ++D+L+AG +P P          
Sbjct: 116 GTITLEHAECLAACDYGPVMTVNYDFFDNVDPQSAVGVVDELRAGNQPTP---------- 165

Query: 197 SQSGRFCQAREAYHDMTSLTGEPHG 221
           S+  R C+ +E    +     E  G
Sbjct: 166 SRGARLCRLKEMSVQLAGFADEREG 190


>gi|254805713|ref|YP_003083934.1| NADH dehydrogenase subunit E [Neisseria meningitidis alpha14]
 gi|254669255|emb|CBA08145.1| NADH dehydrogenase I chain E [Neisseria meningitidis alpha14]
          Length = 157

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL   A+ +VAD++ +   + YE
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPEAIAFVADYIGISPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR   A  E +K++
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGMATGEYLKQR 102


>gi|418701534|ref|ZP_13262459.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Bataviae str. L1111]
 gi|418702983|ref|ZP_13263875.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Hebdomadis str. R499]
 gi|418725108|ref|ZP_13283784.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans str.
           UI 12621]
 gi|421115705|ref|ZP_15576105.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Canicola str. Fiocruz LV133]
 gi|409961490|gb|EKO25235.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans str.
           UI 12621]
 gi|410012777|gb|EKO70868.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Canicola str. Fiocruz LV133]
 gi|410759616|gb|EKR25828.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Bataviae str. L1111]
 gi|410767527|gb|EKR38202.1| NADH-quinone oxidoreductase, E subunit [Leptospira interrogans
           serovar Hebdomadis str. R499]
          Length = 159

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 69/113 (61%), Gaps = 12/113 (10%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP--KM 103
           ++F+  ++KR + ++  +P   +R+ ++P L + QR++G++    M Y+A+ +  P    
Sbjct: 3   YKFSETSEKRFQKMLEAFP--DKRSLILPCLYILQRENGFVDQEGMSYIAERIGDPISLA 60

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           +VY VATFYT++ +KP+G        +YH+  C T+ C+LR SD I E I K+
Sbjct: 61  QVYGVATFYTLYNKKPVG--------KYHIQICGTSSCYLRGSDEIEEHICKR 105


>gi|157736573|ref|YP_001489256.1| NADH-quinone oxidoreductase subunit E [Arcobacter butzleri RM4018]
 gi|315635736|ref|ZP_07890999.1| NADH-quinone oxidoreductase subunit E [Arcobacter butzleri JV22]
 gi|157698427|gb|ABV66587.1| NADH-quinone oxidoreductase, E subunit [Arcobacter butzleri RM4018]
 gi|315480033|gb|EFU70703.1| NADH-quinone oxidoreductase subunit E [Arcobacter butzleri JV22]
          Length = 161

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 61/109 (55%), Gaps = 10/109 (9%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F++T +N+ + +  +S YP     + ++P L L Q Q GW+   AM YVAD L    ++V
Sbjct: 4   FKYTSENEIKFQEYVSRYP--KIDSCMLPALWLVQEQEGWVSPEAMVYVADRLGKTPIQV 61

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIK 154
           YEVATFYTMF  KPIG        +YH+  C T  C +  +  + + IK
Sbjct: 62  YEVATFYTMFNLKPIG--------KYHIELCKTVSCMVCGAKELKQYIK 102


>gi|385323390|ref|YP_005877829.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E;
           NDH-1, chain E) [Neisseria meningitidis 8013]
 gi|385339287|ref|YP_005893159.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           G2136]
 gi|416179747|ref|ZP_11611183.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M6190]
 gi|416190078|ref|ZP_11615558.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           ES14902]
 gi|416200263|ref|ZP_11619578.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           961-5945]
 gi|416200338|ref|ZP_11619604.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           961-5945]
 gi|418287477|ref|ZP_12900075.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis NM233]
 gi|418289723|ref|ZP_12901975.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis NM220]
 gi|421537284|ref|ZP_15983472.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis 93003]
 gi|421541584|ref|ZP_15987701.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis NM255]
 gi|421543647|ref|ZP_15989738.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis NM140]
 gi|421545708|ref|ZP_15991768.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis NM183]
 gi|421547775|ref|ZP_15993807.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis NM2781]
 gi|421549804|ref|ZP_15995814.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis 69166]
 gi|421551987|ref|ZP_15997968.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis NM576]
 gi|421558322|ref|ZP_16004205.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis 92045]
 gi|433466361|ref|ZP_20423824.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           87255]
 gi|433470461|ref|ZP_20427861.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           68094]
 gi|433476823|ref|ZP_20434151.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           70012]
 gi|433491734|ref|ZP_20448836.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           NM586]
 gi|433495957|ref|ZP_20453006.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           M7089]
 gi|433498126|ref|ZP_20455142.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           M7124]
 gi|433500033|ref|ZP_20457024.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           NM174]
 gi|433502144|ref|ZP_20459115.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           NM126]
 gi|433521033|ref|ZP_20477734.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           61103]
 gi|433525279|ref|ZP_20481925.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           69096]
 gi|433538007|ref|ZP_20494494.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           70030]
 gi|254674108|emb|CBA09892.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Neisseria
           meningitidis alpha275]
 gi|261391777|emb|CAX49232.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E;
           NDH-1, chain E) [Neisseria meningitidis 8013]
 gi|325131609|gb|EGC54316.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M6190]
 gi|325139136|gb|EGC61682.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           ES14902]
 gi|325143086|gb|EGC65433.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           961-5945]
 gi|325143156|gb|EGC65502.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           961-5945]
 gi|325197531|gb|ADY92987.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           G2136]
 gi|372203085|gb|EHP16817.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis NM220]
 gi|372203744|gb|EHP17356.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis NM233]
 gi|402319761|gb|EJU55266.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis 93003]
 gi|402319953|gb|EJU55457.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis NM255]
 gi|402325936|gb|EJU61343.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis NM183]
 gi|402326489|gb|EJU61891.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis NM140]
 gi|402327795|gb|EJU63182.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis NM2781]
 gi|402331755|gb|EJU67087.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis 69166]
 gi|402332903|gb|EJU68221.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis NM576]
 gi|402338504|gb|EJU73737.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis 92045]
 gi|432205149|gb|ELK61180.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           87255]
 gi|432211894|gb|ELK67838.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           68094]
 gi|432217976|gb|ELK73841.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           70012]
 gi|432230754|gb|ELK86426.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           NM586]
 gi|432236893|gb|ELK92497.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           M7124]
 gi|432237599|gb|ELK93192.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           M7089]
 gi|432237745|gb|ELK93336.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           NM174]
 gi|432243356|gb|ELK98868.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           NM126]
 gi|432262499|gb|ELL17737.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           61103]
 gi|432263427|gb|ELL18647.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           69096]
 gi|432276147|gb|ELL31209.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           70030]
          Length = 157

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VAD++ +   + YE
Sbjct: 2   LSAESLKQIDTELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR   A  E +K+K
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGMATGEYLKQK 102


>gi|335044177|ref|ZP_08537202.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Methylophaga
           aminisulfidivorans MP]
 gi|333787423|gb|EGL53307.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Methylophaga
           aminisulfidivorans MP]
          Length = 170

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 67/113 (59%), Gaps = 9/113 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMRVY 106
           FT   +   +  I+ YP+G  ++AVIP L + Q  +G WL  + M  +A++L++  + VY
Sbjct: 14  FTEQLRAELDKWIAKYPIGRAQSAVIPCLHILQEANGGWLSRAIMDALAEYLSMSNISVY 73

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           EVATFY+MF  +P+G+ +I        + CT   C L  S+ ILE ++++ ++
Sbjct: 74  EVATFYSMFELEPVGKHKI--------SLCTNISCMLCGSEEILEHLQQRLSI 118


>gi|284039946|ref|YP_003389876.1| NADH-quinone oxidoreductase subunit E [Spirosoma linguale DSM 74]
 gi|283819239|gb|ADB41077.1| NADH-quinone oxidoreductase, E subunit [Spirosoma linguale DSM 74]
          Length = 166

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 65/109 (59%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
           FTP+   +A+ II+ YP G +++A++PLL L Q Q GW     M YVA  L++  + VYE
Sbjct: 11  FTPERLTKAQEIIARYPEGKQKSALLPLLHLLQEQEGWTSPEGMDYVARMLDIQPIEVYE 70

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VA+FYTM+   P+G    K +++Y    C T PC L   + +   +K++
Sbjct: 71  VASFYTMYHLNPVG----KHVIEY----CRTGPCCLMGGEDVYAHLKQR 111


>gi|387130155|ref|YP_006293045.1| NADH-ubiquinone oxidoreductase subunit E [Methylophaga sp. JAM7]
 gi|386271444|gb|AFJ02358.1| NADH-ubiquinone oxidoreductase chain E [Methylophaga sp. JAM7]
          Length = 169

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 9/110 (8%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVY 106
           F    +++ +  I+ YP G  ++A+IP L + Q  H GWL    M  +A +L++P++ VY
Sbjct: 14  FNEAVRQQLDEWIAQYPAGQSQSALIPCLHVLQSHHDGWLSKPLMQALALYLDVPEISVY 73

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           EVATFYTMF   P+G  +I          CT   C L  S+ + E I+KK
Sbjct: 74  EVATFYTMFDLSPVGRHKI--------CLCTNISCQLCGSEKMAEHIQKK 115


>gi|384155007|ref|YP_005537822.1| NADH-quinone oxidoreductase subunit E [Arcobacter butzleri ED-1]
 gi|345468561|dbj|BAK70012.1| NADH-quinone oxidoreductase E subunit [Arcobacter butzleri ED-1]
          Length = 161

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 61/109 (55%), Gaps = 10/109 (9%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           F++T +N+ + +  +S YP     + ++P L L Q Q GW+   AM YVAD L    ++V
Sbjct: 4   FKYTSENEIKFQEYVSRYP--KIDSCMLPALWLVQEQEGWVSPEAMVYVADRLGKTPIQV 61

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIK 154
           YEVATFYTMF  KPIG        +YH+  C T  C +  +  + + IK
Sbjct: 62  YEVATFYTMFNLKPIG--------KYHIELCKTVSCMVCGAKELKQYIK 102


>gi|406925514|gb|EKD61968.1| NADH-quinone oxidoreductase, E subunit, partial [uncultured
           bacterium]
          Length = 84

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 45/70 (64%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
           FEFTP N   A+  IS YP G + +AVIPLL  AQ Q GWL   A+ +VAD L L  +R 
Sbjct: 13  FEFTPANLAWAKGQISKYPAGRQASAVIPLLWRAQEQEGWLSRPAIEHVADMLGLAYIRA 72

Query: 106 YEVATFYTMF 115
            EVATFY MF
Sbjct: 73  LEVATFYFMF 82


>gi|399526594|ref|ZP_10766357.1| NADH-quinone oxidoreductase, E subunit [Actinomyces sp. ICM39]
 gi|398362864|gb|EJN46530.1| NADH-quinone oxidoreductase, E subunit [Actinomyces sp. ICM39]
          Length = 236

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 12/116 (10%)

Query: 48  FTPDNKKRAEA----IISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
           +TPD   R +A    II+ YP GH R+A++P+L L Q   G++    + ++A  L+LP+ 
Sbjct: 3   YTPDTLARLQADAAQIIARYPDGHSRSALLPMLHLIQSVDGYVSPDGIDFIAATLDLPRA 62

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
            +  VATFYT + R P GE        Y +  CT   C +   D I E + +K  +
Sbjct: 63  EISAVATFYTQYKRHPTGE--------YLVGVCTNALCAVMGGDEIWEKVSEKVGV 110


>gi|407327638|dbj|BAM45348.1| NADH-quinone oxidoreductase subunit E [uncultured bacterium]
          Length = 176

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 10/107 (9%)

Query: 53  KKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFY 112
           +K  + I+S YPV  +R+A+IPLL LAQ+  G++  +AM  +A  L+L   +VYE ATFY
Sbjct: 7   QKEIDEILSRYPV--KRSALIPLLYLAQQDAGFVSETAMKEIAGLLHLTPPQVYETATFY 64

Query: 113 TMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           TM   KP+G        ++HL  C +  C L  SD +L  +K K  +
Sbjct: 65  TMINLKPVG--------KFHLQVCKSLMCALAGSDTVLGWVKTKLGI 103


>gi|120402879|ref|YP_952708.1| NADH dehydrogenase subunit E [Mycobacterium vanbaalenii PYR-1]
 gi|119955697|gb|ABM12702.1| NADH dehydrogenase subunit E [Mycobacterium vanbaalenii PYR-1]
          Length = 253

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 85/203 (41%), Gaps = 52/203 (25%)

Query: 56  AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMF 115
           A  II  YP    R+A++PLL L Q + G+L  + + + A  L L    V  VATFY+M+
Sbjct: 36  AATIIGRYP--QSRSALLPLLHLVQAEDGYLTPAGIAFCAGQLGLTHAEVTAVATFYSMY 93

Query: 116 IRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK-------------------- 155
            R+P GE        Y +  CT T C +   DAILE ++                     
Sbjct: 94  RREPTGE--------YLVGVCTNTLCAVMGGDAILESLESHLDIAPGQTTADGTITLEHV 145

Query: 156 KCNMMLERQDL-----------EPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQ 204
           +CN   +   +            P  +  ++D L++G+KP P          S+SG  C 
Sbjct: 146 ECNAACDYAPVVMVNWDFFDNQTPSSVRDLVDSLRSGEKPTP----------SRSGALCT 195

Query: 205 AREAYHDMTSLTGEPHGPWDSKR 227
            RE    +  L+     P D+ R
Sbjct: 196 FRETARILAGLSNPGDAP-DAGR 217


>gi|313669282|ref|YP_004049566.1| NADH dehydrogenase I subunit E [Neisseria lactamica 020-06]
 gi|421862675|ref|ZP_16294380.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|309379799|emb|CBX21575.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313006744|emb|CBN88214.1| NADH dehydrogenase I chain E [Neisseria lactamica 020-06]
          Length = 157

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VAD++ +   + YE
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR   A  E +K+K
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGMATGEYLKQK 102


>gi|421560400|ref|ZP_16006259.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           NM2657]
 gi|254670957|emb|CBA07627.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Neisseria
           meningitidis alpha153]
 gi|402340573|gb|EJU75773.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           NM2657]
          Length = 157

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VAD++ +   + YE
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR   A  E +K+K
Sbjct: 62  VATFYNMYNLEPVG--------KYKLTVCTNLPCALRGGMATGEYLKQK 102


>gi|433535901|ref|ZP_20492420.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           77221]
 gi|432276322|gb|ELL31380.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           77221]
          Length = 157

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VAD++ +   + YE
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR   A  E +K+K
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGMATGEYLKQK 102


>gi|261378536|ref|ZP_05983109.1| NADH dehydrogenase, E subunit [Neisseria cinerea ATCC 14685]
 gi|269145086|gb|EEZ71504.1| NADH dehydrogenase, E subunit [Neisseria cinerea ATCC 14685]
          Length = 157

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VAD++ +   + YE
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR   A  E +K+K
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGMATGEYLKQK 102


>gi|302864905|ref|YP_003833542.1| NADH-quinone oxidoreductase subunit E [Micromonospora aurantiaca
           ATCC 27029]
 gi|315501190|ref|YP_004080077.1| NADH-quinone oxidoreductase, e subunit [Micromonospora sp. L5]
 gi|302567764|gb|ADL43966.1| NADH-quinone oxidoreductase, E subunit [Micromonospora aurantiaca
           ATCC 27029]
 gi|315407809|gb|ADU05926.1| NADH-quinone oxidoreductase, E subunit [Micromonospora sp. L5]
          Length = 364

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 49/193 (25%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
             F+   + RA  II+ YP    R+A++PLL L Q + G++  + + + A+ L L K +V
Sbjct: 1   MSFSETTRTRAREIIARYPADRSRSALLPLLHLVQSEEGYVSPAGVEFCAEVLGLNKAQV 60

Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER-- 163
             VATFYTM+ RKP G+        Y ++ CT T C +     + + + +   +  E   
Sbjct: 61  GAVATFYTMYKRKPTGD--------YLVSVCTNTMCDVLGGQKVYDTLAEHLGVGHEETT 112

Query: 164 -----------------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
                                         ++EP+    ++++L+AG +P P        
Sbjct: 113 ADGKITLEHAECLAACDYGPVMTVNYDFFDNVEPQAALDVVEELRAGGRPMP-------- 164

Query: 195 IGSQSGRFCQARE 207
             ++  R C  +E
Sbjct: 165 --TRGARLCTLKE 175


>gi|261379576|ref|ZP_05984149.1| NADH dehydrogenase, E subunit [Neisseria subflava NJ9703]
 gi|284798050|gb|EFC53397.1| NADH dehydrogenase, E subunit [Neisseria subflava NJ9703]
          Length = 157

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VAD++ +   + YE
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR   A  E +K+K
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGMATGEYLKQK 102


>gi|436834161|ref|YP_007319377.1| NADH-quinone oxidoreductase, E subunit [Fibrella aestuarina BUZ 2]
 gi|384065574|emb|CCG98784.1| NADH-quinone oxidoreductase, E subunit [Fibrella aestuarina BUZ 2]
          Length = 166

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 8/112 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
           FTP+   +A  II+ YP G +++A++PLL L Q Q GW     M YVA  L +  + VYE
Sbjct: 11  FTPERLAKANEIIARYPAGKQKSALLPLLHLLQEQEGWTSPEGMDYVAGLLQIQPIEVYE 70

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           VA+FYTM+   P+G    K +++Y    C T PC L   + +   +K++  +
Sbjct: 71  VASFYTMYHLDPVG----KHVIEY----CRTGPCCLMGGEDVYAHLKQRLGI 114


>gi|218767065|ref|YP_002341577.1| NADH dehydrogenase subunit E [Neisseria meningitidis Z2491]
 gi|385342720|ref|YP_005896591.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M01-240149]
 gi|385856387|ref|YP_005902899.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           NZ-05/33]
 gi|416186273|ref|ZP_11613634.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M0579]
 gi|421539441|ref|ZP_15985602.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis 93004]
 gi|433478843|ref|ZP_20436142.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           63041]
 gi|433512607|ref|ZP_20469409.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           63049]
 gi|433519024|ref|ZP_20475750.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           65014]
 gi|433540179|ref|ZP_20496636.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           63006]
 gi|121051073|emb|CAM07343.1| NADH dehydrogenase I chain E [Neisseria meningitidis Z2491]
 gi|325137072|gb|EGC59668.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M0579]
 gi|325202926|gb|ADY98380.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M01-240149]
 gi|325207276|gb|ADZ02728.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           NZ-05/33]
 gi|402321426|gb|EJU56900.1| ubiquinone dehydrogenase, E subunit [Neisseria meningitidis 93004]
 gi|432218817|gb|ELK74669.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           63041]
 gi|432250362|gb|ELL05757.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           63049]
 gi|432256765|gb|ELL12079.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           65014]
 gi|432278160|gb|ELL33204.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           63006]
          Length = 157

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VAD++ +   + YE
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR   A  E +K+K
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGMATGEYLKQK 102


>gi|385338858|ref|YP_005892731.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E;
           NDH-1, chain E) [Neisseria meningitidis WUE 2594]
 gi|433474723|ref|ZP_20432071.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           88050]
 gi|433514753|ref|ZP_20471529.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           2004090]
 gi|433516834|ref|ZP_20473587.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           96023]
 gi|433523211|ref|ZP_20479883.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           97020]
 gi|433527413|ref|ZP_20484026.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           NM3652]
 gi|433529506|ref|ZP_20486105.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           NM3642]
 gi|433531624|ref|ZP_20488193.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           2007056]
 gi|433533767|ref|ZP_20490316.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           2001212]
 gi|319411272|emb|CBY91679.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E;
           NDH-1, chain E) [Neisseria meningitidis WUE 2594]
 gi|432212783|gb|ELK68718.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           88050]
 gi|432256048|gb|ELL11373.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           96023]
 gi|432256417|gb|ELL11740.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           2004090]
 gi|432262667|gb|ELL17903.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           97020]
 gi|432267482|gb|ELL22660.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           NM3652]
 gi|432269644|gb|ELL24801.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           2007056]
 gi|432269757|gb|ELL24910.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           NM3642]
 gi|432274320|gb|ELL29413.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           2001212]
          Length = 157

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VAD++ +   + YE
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR   A  E +K+K
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGMATGEYLKQK 102


>gi|15676169|ref|NP_273301.1| NADH dehydrogenase subunit E [Neisseria meningitidis MC58]
 gi|385852444|ref|YP_005898958.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           H44/76]
 gi|416194956|ref|ZP_11617537.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           CU385]
 gi|427826972|ref|ZP_18994017.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           H44/76]
 gi|433464229|ref|ZP_20421723.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           NM422]
 gi|433487434|ref|ZP_20444613.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           M13255]
 gi|433489608|ref|ZP_20446747.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           NM418]
 gi|433504181|ref|ZP_20461126.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           9506]
 gi|433506289|ref|ZP_20463208.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           9757]
 gi|433508368|ref|ZP_20465254.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           12888]
 gi|433510506|ref|ZP_20467349.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           4119]
 gi|7225467|gb|AAF40699.1| NADH dehydrogenase I, E subunit [Neisseria meningitidis MC58]
 gi|316985173|gb|EFV64125.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           H44/76]
 gi|325141081|gb|EGC63584.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           CU385]
 gi|325199448|gb|ADY94903.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           H44/76]
 gi|432206039|gb|ELK62054.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           NM422]
 gi|432226199|gb|ELK81932.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           M13255]
 gi|432230604|gb|ELK86279.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           NM418]
 gi|432243564|gb|ELK99075.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           9506]
 gi|432244305|gb|ELK99800.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           9757]
 gi|432250019|gb|ELL05417.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           12888]
 gi|432250574|gb|ELL05967.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           4119]
          Length = 157

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VAD++ +   + YE
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR   A  E +K+K
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGMATGEYLKQK 102


>gi|399523501|ref|ZP_10764134.1| NADH-quinone oxidoreductase, E subunit [Atopobium sp. ICM58]
 gi|398375539|gb|EJN52893.1| NADH-quinone oxidoreductase, E subunit [Atopobium sp. ICM58]
          Length = 240

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 12/118 (10%)

Query: 46  FEFTPDNKKRAEA----IISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP 101
             +TPDN  R +A    II+ YP GH R+A++P+L L Q   G++    + ++A  L+LP
Sbjct: 1   MSYTPDNLARLQADAAQIIARYPDGHSRSALLPMLHLIQSVDGYVSPDGIDFIAATLDLP 60

Query: 102 KMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           +  +  VATFYT + R P G+        Y +  CT   C +   D I + + +K  +
Sbjct: 61  RAEISAVATFYTQYKRHPTGD--------YLVGVCTNALCAVMGGDEIWDKVSEKVGV 110


>gi|359146179|ref|ZP_09179810.1| NADH dehydrogenase subunit E [Streptomyces sp. S4]
          Length = 291

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 58/103 (56%), Gaps = 10/103 (9%)

Query: 53  KKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFY 112
           K  AEAII+ YP    R+A++P+L L Q + G++  + M + A+ L L    V  VATFY
Sbjct: 31  KADAEAIIARYP--DSRSALLPMLHLVQSEEGYVTRTGMAFCAELLGLTTAEVTAVATFY 88

Query: 113 TMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
           TM+ RKP G+        Y +  CT T C +   DAI + +K+
Sbjct: 89  TMYRRKPSGD--------YQVGVCTNTLCAVMGGDAIFDELKE 123


>gi|302035988|ref|YP_003796310.1| NADH-quinone oxidoreductase subunit E [Candidatus Nitrospira
           defluvii]
 gi|300604052|emb|CBK40384.1| NADH-quinone oxidoreductase, subunit E [Candidatus Nitrospira
           defluvii]
          Length = 178

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 62/108 (57%), Gaps = 10/108 (9%)

Query: 52  NKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATF 111
           +K   + I+S YPV  +R+A++PLL LAQR+ G++  +AM  +A  L L   +VYE ATF
Sbjct: 6   HKAEIDDILSRYPV--KRSALLPLLYLAQREQGYITEAAMQEIAGLLKLTPPQVYETATF 63

Query: 112 YTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           YTM   KP+G        ++HL  C +  C L  SD ++  I  K  +
Sbjct: 64  YTMLNLKPVG--------KFHLQVCKSLMCALVGSDTVIGWISAKLGI 103


>gi|291452003|ref|ZP_06591393.1| ATP synthase subunit E [Streptomyces albus J1074]
 gi|291354952|gb|EFE81854.1| ATP synthase subunit E [Streptomyces albus J1074]
          Length = 291

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 58/103 (56%), Gaps = 10/103 (9%)

Query: 53  KKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFY 112
           K  AEAII+ YP    R+A++P+L L Q + G++  + M + A+ L L    V  VATFY
Sbjct: 31  KADAEAIIARYP--DSRSALLPMLHLVQSEEGYVTRTGMAFCAELLGLTTAEVTAVATFY 88

Query: 113 TMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
           TM+ RKP G+        Y +  CT T C +   DAI + +K+
Sbjct: 89  TMYRRKPSGD--------YQVGVCTNTLCAVMGGDAIFDELKE 123


>gi|134095027|ref|YP_001100102.1| NADH dehydrogenase subunit E [Herminiimonas arsenicoxydans]
 gi|133738930|emb|CAL61977.1| NADH-quinone oxidoreductase subunit E (NADH dehydrogenase I subunit
           E) (NDH-1 subunit E) [Herminiimonas arsenicoxydans]
          Length = 159

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 8/103 (7%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
           K+ +  I+ +P   +++AV+  L +AQ + GWLP   M  VAD+L +P + V EVATFY 
Sbjct: 9   KKIDREIAKFPADQKQSAVMAALAIAQDETGWLPPEVMQEVADYLGMPAIAVQEVATFYN 68

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           M+  KP+G+ +I        + CT  PC L   +     +K K
Sbjct: 69  MYDTKPVGKHKI--------SVCTNLPCLLSGGERAAHYLKHK 103


>gi|421740947|ref|ZP_16179175.1| NADH-quinone oxidoreductase, E subunit [Streptomyces sp. SM8]
 gi|406690634|gb|EKC94427.1| NADH-quinone oxidoreductase, E subunit [Streptomyces sp. SM8]
          Length = 291

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 58/103 (56%), Gaps = 10/103 (9%)

Query: 53  KKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFY 112
           K  AEAII+ YP    R+A++P+L L Q + G++  + M + A+ L L    V  VATFY
Sbjct: 31  KTDAEAIIARYP--DSRSALLPMLHLVQSEEGYVTRTGMAFCAELLGLTTAEVTAVATFY 88

Query: 113 TMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
           TM+ RKP G+        Y +  CT T C +   DAI + +K+
Sbjct: 89  TMYRRKPSGD--------YQVGVCTNTLCAVMGGDAIFDELKE 123


>gi|398331579|ref|ZP_10516284.1| NADH dehydrogenase (ubiquinone) subunit E [Leptospira alexanderi
           serovar Manhao 3 str. L 60]
          Length = 159

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 70/115 (60%), Gaps = 12/115 (10%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP-- 101
           + ++F+  ++KR + ++ ++P   +R+ V+P L + QR++G++    M YVA+ L  P  
Sbjct: 1   MSYKFSDVSEKRFQKMLEVFP--DKRSLVLPCLFILQRENGFVDQDGMAYVAERLGDPIS 58

Query: 102 KMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
             +VY VATFYT++ +KP+G        +YH+  C T+ C+L  SD I E + K+
Sbjct: 59  LAQVYGVATFYTLYNKKPVG--------KYHIQICGTSSCYLSGSDEIEEHLCKR 105


>gi|198284342|ref|YP_002220663.1| NADH-quinone oxidoreductase subunit E [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666126|ref|YP_002427004.1| NADH-quinone oxidoreductase subunit E [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|415987906|ref|ZP_11559811.1| NADH-quinone oxidoreductase, E subunit [Acidithiobacillus sp.
           GGI-221]
 gi|198248863|gb|ACH84456.1| NADH-quinone oxidoreductase, E subunit [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518339|gb|ACK78925.1| NADH-quinone oxidoreductase, E subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|339834993|gb|EGQ62712.1| NADH-quinone oxidoreductase, E subunit [Acidithiobacillus sp.
           GGI-221]
          Length = 163

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 56/94 (59%), Gaps = 8/94 (8%)

Query: 63  YPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGE 122
           YP    R+ ++  L +AQ +HG+L  + M ++A  L +P ++VYE ATFY+M+  +P+G 
Sbjct: 17  YPADQARSVLLAALRIAQEEHGYLSDAVMEHIAGLLGIPAIQVYEAATFYSMYDLQPVG- 75

Query: 123 ERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
                  ++ L  C +  C+L  SDAIL+ + ++
Sbjct: 76  -------RHKLCVCGSVSCFLNGSDAILQHLSER 102


>gi|257095315|ref|YP_003168956.1| NADH dehydrogenase subunit E [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047839|gb|ACV37027.1| NADH-quinone oxidoreductase, E subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 157

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            T ++ KR +  I+ YP   +++AV+  L +AQ + GWL   A+ +VA +L +  +  YE
Sbjct: 2   LTSESLKRIDREIAKYPADQKQSAVMASLAIAQEEQGWLSSEAIEFVAGYLGMAPIAAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VA+FY M+  KP+G        +Y ++ CT  PC L       E +K+K
Sbjct: 62  VASFYNMYDLKPVG--------KYKVSVCTNLPCMLTGGVDAGEYLKQK 102


>gi|121593381|ref|YP_985277.1| NADH-quinone oxidoreductase subunit E [Acidovorax sp. JS42]
 gi|222110090|ref|YP_002552354.1| NADH-quinone oxidoreductase subunit E [Acidovorax ebreus TPSY]
 gi|120605461|gb|ABM41201.1| NADH dehydrogenase subunit E [Acidovorax sp. JS42]
 gi|221729534|gb|ACM32354.1| NADH-quinone oxidoreductase, E subunit [Acidovorax ebreus TPSY]
          Length = 163

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            T   K+R    ++ YP   +++AV+  L + Q++ GW+   +   +A++L +P++ V+E
Sbjct: 2   ITEATKQRFAREVAKYPADQKQSAVMACLSIVQQEQGWVSAESEAVIAEYLGMPQIAVHE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           V TFY M+ ++P+G        +Y L  CT  PC LR     L  ++KK
Sbjct: 62  VTTFYNMYNQQPVG--------KYKLAVCTNLPCQLRRGQDALHHLEKK 102


>gi|256396788|ref|YP_003118352.1| NADH-quinone oxidoreductase subunit E [Catenulispora acidiphila DSM
           44928]
 gi|256363014|gb|ACU76511.1| NADH-quinone oxidoreductase, E subunit [Catenulispora acidiphila
           DSM 44928]
          Length = 228

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 41/159 (25%)

Query: 56  AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMF 115
           A+AI++ YP     +A++PLL L Q + G++  + + Y A  L L    V  V+TFYTM+
Sbjct: 17  ADAIVARYP--QSGSALLPLLHLVQSEEGYVSPAGIEYCAAKLGLSTAEVSAVSTFYTMY 74

Query: 116 IRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK-------------------- 155
            R+P+G+        YH+  CT T C +   DAI   +K+                    
Sbjct: 75  KRRPVGD--------YHVGVCTNTLCAVMGGDAIFATLKEHLGVGNDETTEDGKVTLEHI 126

Query: 156 KCNMMLE-----------RQDLEPKDMEQIIDDLKAGKK 183
           +CN   +             D+ P    +++D+L+AGK+
Sbjct: 127 ECNAACDFAPVMTVNWEFLDDMNPDKAVRVVDELRAGKE 165


>gi|88812972|ref|ZP_01128215.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Nitrococcus
           mobilis Nb-231]
 gi|88789750|gb|EAR20874.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Nitrococcus
           mobilis Nb-231]
          Length = 167

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 9/101 (8%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118
           ++ +P   +R+AVIP L +AQ  +G WL    M  VA++L LP + VYEV TFY+MF  K
Sbjct: 23  LAKFPGEGKRSAVIPALHIAQEGNGGWLSRELMEAVAEYLELPPVAVYEVGTFYSMFDLK 82

Query: 119 PIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           P G  ++        N CT   C LR ++ I+E ++ K  +
Sbjct: 83  PTGRHKV--------NICTNISCLLRGAERIVEHVENKLGI 115


>gi|121634117|ref|YP_974362.1| NADH dehydrogenase subunit E [Neisseria meningitidis FAM18]
 gi|385327613|ref|YP_005881916.1| NADH dehydrogenase I subunit E [Neisseria meningitidis alpha710]
 gi|421564387|ref|ZP_16010186.1| NADH dehydrogenase I chain E [Neisseria meningitidis NM3081]
 gi|433493841|ref|ZP_20450917.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           NM762]
 gi|120865823|emb|CAM09555.1| NADH dehydrogenase I chain E [Neisseria meningitidis FAM18]
 gi|308388465|gb|ADO30785.1| NADH dehydrogenase I chain E [Neisseria meningitidis alpha710]
 gi|402345984|gb|EJU81088.1| NADH dehydrogenase I chain E [Neisseria meningitidis NM3081]
 gi|432232019|gb|ELK87674.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           NM762]
          Length = 157

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VAD++ +   + YE
Sbjct: 2   LSAESLKQIDTELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR   A  E +K++
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGMATGEYLKQR 102


>gi|116329150|ref|YP_798870.1| NADH dehydrogenase (ubiquinone) subunit E [Leptospira
           borgpetersenii serovar Hardjo-bovis str. L550]
 gi|116330242|ref|YP_799960.1| NADH dehydrogenase (ubiquinone) subunit E [Leptospira
           borgpetersenii serovar Hardjo-bovis str. JB197]
 gi|116121894|gb|ABJ79937.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira borgpetersenii
           serovar Hardjo-bovis str. L550]
 gi|116123931|gb|ABJ75202.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira borgpetersenii
           serovar Hardjo-bovis str. JB197]
          Length = 159

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 69/115 (60%), Gaps = 12/115 (10%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP-- 101
           + ++F+  ++KR   ++ ++P   +R+ V+P L + QR++G++    M Y+A+ L  P  
Sbjct: 1   MSYKFSEASEKRFRKMLEVFP--DKRSLVLPCLYILQRENGFVDQDGMAYIAERLGDPIS 58

Query: 102 KMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
             +VY VATFYT++ +KP+G        +YH+  C T+ C+L  SD I E I K+
Sbjct: 59  LAQVYGVATFYTLYNKKPVG--------KYHIQICGTSSCYLLGSDEIEEHICKR 105


>gi|195400737|ref|XP_002058972.1| GJ15321 [Drosophila virilis]
 gi|194141624|gb|EDW58041.1| GJ15321 [Drosophila virilis]
          Length = 71

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 48/70 (68%)

Query: 1  MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAII 60
          MLSN A      VR ++R+++T+     D LFVHRDT +DN  + FEF+ +NKKR +AI+
Sbjct: 1  MLSNCAARTLATVRGSLRAIATSSAQRSDNLFVHRDTPEDNPSIPFEFSAENKKRVDAIL 60

Query: 61 SIYPVGHERA 70
          SIYP GH+R 
Sbjct: 61 SIYPEGHKRG 70


>gi|399926539|ref|ZP_10783897.1| NADH-quinone oxidoreductase [Myroides injenensis M09-0166]
          Length = 180

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 40/167 (23%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVY 106
            T + ++R   ++S YP   +++A++P+L   Q  H  WL    M  VA+ L +  + VY
Sbjct: 16  ITAELEQRINELLSHYPADKKKSALLPVLHAVQDAHDNWLSAELMDKVAEILGITPIEVY 75

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE--------------- 151
           EVATFYTM+  KP+G        +Y   +C T+ C +R +D ILE               
Sbjct: 76  EVATFYTMYNLKPVG--------KYMFEFCLTSCCGIRGADDILEYTCEKLGIKPGETTE 127

Query: 152 -----VIKKKC-------NMM----LERQDLEPKDMEQIIDDLKAGK 182
                V+  +C        MM      ++ L  + ++QII+D +AGK
Sbjct: 128 DGMFSVVGVQCLGACGYAPMMQVGDFYKEHLTEEKIDQIIEDCRAGK 174


>gi|300691029|ref|YP_003752024.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum
           PSI07]
 gi|299078089|emb|CBJ50732.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum
           PSI07]
 gi|344169640|emb|CCA81999.1| NADH-quinone oxidoreductase subunit E [blood disease bacterium
           R229]
          Length = 167

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 8/103 (7%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
           K  +  ++ YP   +++AV+  L +AQ + GW+    M +VA++L +P + V EVATFY 
Sbjct: 8   KEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEEVATFYN 67

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           M+  KP+G        ++ L+ CT  PC L   D   + +K+K
Sbjct: 68  MYDTKPVG--------RFKLSVCTNLPCALSGGDRAADYLKQK 102


>gi|297192784|ref|ZP_06910182.1| NADH-quinone oxidoreductase subunit E [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197721029|gb|EDY64937.1| NADH-quinone oxidoreductase subunit E [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 276

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 41/162 (25%)

Query: 56  AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMF 115
           A+ II+ YP    R+A++PLL L Q + G +  + M + A+ L+L    V  VATFY+M+
Sbjct: 28  AKEIIARYP--GSRSALLPLLHLVQSEEGHVSRTGMRFCAEMLDLTTAEVTAVATFYSMY 85

Query: 116 IRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK-------------------- 155
            RKP GE        Y +  CT T C +   DAI E +K+                    
Sbjct: 86  RRKPSGE--------YQVGVCTNTLCAVMGGDAIFEELKEHLGVGNNETTHDGKITLEHI 137

Query: 156 KCNMMLERQDL-----------EPKDMEQIIDDLKAGKKPAP 186
           +CN   +   +            P+  +Q++DDL+AG++  P
Sbjct: 138 ECNAACDFAPVVMVNWEFFDNQTPQSAKQLVDDLRAGEQVVP 179


>gi|418720314|ref|ZP_13279512.1| NADH-quinone oxidoreductase, E subunit [Leptospira borgpetersenii
           str. UI 09149]
 gi|418735326|ref|ZP_13291737.1| NADH-quinone oxidoreductase, E subunit [Leptospira borgpetersenii
           serovar Castellonis str. 200801910]
 gi|421094129|ref|ZP_15554850.1| NADH-quinone oxidoreductase, E subunit [Leptospira borgpetersenii
           str. 200801926]
 gi|410363270|gb|EKP14302.1| NADH-quinone oxidoreductase, E subunit [Leptospira borgpetersenii
           str. 200801926]
 gi|410743292|gb|EKQ92035.1| NADH-quinone oxidoreductase, E subunit [Leptospira borgpetersenii
           str. UI 09149]
 gi|410748947|gb|EKR01840.1| NADH-quinone oxidoreductase, E subunit [Leptospira borgpetersenii
           serovar Castellonis str. 200801910]
 gi|456889037|gb|EMF99959.1| NADH-quinone oxidoreductase, E subunit [Leptospira borgpetersenii
           str. 200701203]
          Length = 159

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 69/115 (60%), Gaps = 12/115 (10%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP-- 101
           + ++F+  ++KR   ++ ++P   +R+ V+P L + QR++G++    M Y+A+ L  P  
Sbjct: 1   MSYKFSEASEKRFRKMLEVFP--DKRSLVLPCLYILQRENGFVDQDGMAYIAERLGDPIS 58

Query: 102 KMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
             +VY VATFYT++ +KP+G        +YH+  C T+ C+L  SD I E I K+
Sbjct: 59  LAQVYGVATFYTLYNKKPVG--------KYHIQICGTSSCYLLGSDEIEEHICKR 105


>gi|59802068|ref|YP_208780.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA 1090]
 gi|194099643|ref|YP_002002774.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae NCCP11945]
 gi|240014999|ref|ZP_04721912.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae DGI18]
 gi|240017447|ref|ZP_04723987.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA6140]
 gi|240122068|ref|ZP_04735030.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae PID24-1]
 gi|254494623|ref|ZP_05107794.1| NADH dehydrogenase I [Neisseria gonorrhoeae 1291]
 gi|268595650|ref|ZP_06129817.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae 35/02]
 gi|268597682|ref|ZP_06131849.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA19]
 gi|268599934|ref|ZP_06134101.1| NADH dehydrogenase I [Neisseria gonorrhoeae MS11]
 gi|268602268|ref|ZP_06136435.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID18]
 gi|268604534|ref|ZP_06138701.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID1]
 gi|268682989|ref|ZP_06149851.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID332]
 gi|268685154|ref|ZP_06152016.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-92-679]
 gi|268687417|ref|ZP_06154279.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291042881|ref|ZP_06568622.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae DGI2]
 gi|293398108|ref|ZP_06642313.1| NADH dehydrogenase I subunit E [Neisseria gonorrhoeae F62]
 gi|59718963|gb|AAW90368.1| putative NADH dehydrogenase I chain E [Neisseria gonorrhoeae FA
           1090]
 gi|193934933|gb|ACF30757.1| ATP synthase subunit E [Neisseria gonorrhoeae NCCP11945]
 gi|226513663|gb|EEH63008.1| NADH dehydrogenase I [Neisseria gonorrhoeae 1291]
 gi|268549039|gb|EEZ44457.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae 35/02]
 gi|268551470|gb|EEZ46489.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA19]
 gi|268584065|gb|EEZ48741.1| NADH dehydrogenase I [Neisseria gonorrhoeae MS11]
 gi|268586399|gb|EEZ51075.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID18]
 gi|268588665|gb|EEZ53341.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID1]
 gi|268623273|gb|EEZ55673.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID332]
 gi|268625438|gb|EEZ57838.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-92-679]
 gi|268627701|gb|EEZ60101.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291013315|gb|EFE05281.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae DGI2]
 gi|291611371|gb|EFF40441.1| NADH dehydrogenase I subunit E [Neisseria gonorrhoeae F62]
          Length = 157

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 8/97 (8%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           ++ YP    R+A++  L +AQ + GWL    + +VAD++ +   + YEVATFY M+  +P
Sbjct: 14  LAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYEVATFYNMYDLEP 73

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           +G        +Y L  CT  PC LR   A  E +K+K
Sbjct: 74  VG--------KYKLTVCTNLPCALRGGMATGEYLKQK 102


>gi|396584711|ref|ZP_10485162.1| NADH-quinone oxidoreductase, E subunit [Actinomyces sp. ICM47]
 gi|395547621|gb|EJG15044.1| NADH-quinone oxidoreductase, E subunit [Actinomyces sp. ICM47]
          Length = 247

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 12/118 (10%)

Query: 46  FEFTPDNKKRAEA----IISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP 101
             +TPD   R +A    II+ YP GH R+A++P+L L Q   G++  + + ++A  L+LP
Sbjct: 1   MSYTPDTLARLQADAAQIIARYPDGHSRSALLPMLHLIQSVDGYVSPNGIDFIAATLDLP 60

Query: 102 KMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           +  +  VATFYT + R P G+        Y +  CT   C +   D I E + +K  +
Sbjct: 61  RAEISAVATFYTQYKRHPTGD--------YLVGVCTNALCAVMGGDEIWEKVSEKVGV 110


>gi|385336585|ref|YP_005890532.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae TCDC-NG08107]
 gi|317165128|gb|ADV08669.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 157

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 8/97 (8%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           ++ YP    R+A++  L +AQ + GWL    + +VAD++ +   + YEVATFY M+  +P
Sbjct: 14  LAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYEVATFYNMYDLEP 73

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           +G        +Y L  CT  PC LR   A  E +K+K
Sbjct: 74  VG--------KYKLTVCTNLPCALRGGMATGEYLKQK 102


>gi|340786785|ref|YP_004752250.1| NADH-ubiquinone oxidoreductase subunit E [Collimonas fungivorans
           Ter331]
 gi|340552052|gb|AEK61427.1| NADH-ubiquinone oxidoreductase chain E [Collimonas fungivorans
           Ter331]
          Length = 167

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + D  K+ +  ++ +P   +++AV+  L +AQ + GWL    M  VAD+L +P + V E
Sbjct: 7   LSQDTYKKIDREVAKFPADQKQSAVMAALAIAQDEKGWLAPETMQDVADYLGMPAIAVQE 66

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  KP+G+ +I        + CT  PC L   +   E +K K
Sbjct: 67  VATFYNMYNTKPVGKHKI--------SICTNLPCQLSGGERAAEHLKHK 107


>gi|293191720|ref|ZP_06609277.1| NADH dehydrogenase I, E subunit [Actinomyces odontolyticus F0309]
 gi|292820492|gb|EFF79474.1| NADH dehydrogenase I, E subunit [Actinomyces odontolyticus F0309]
          Length = 236

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 12/116 (10%)

Query: 48  FTPDNKKRAEA----IISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
           +TPD   R +A    II+ YP GH R+A++P+L L Q   G++    + +++  L+LP+ 
Sbjct: 3   YTPDTLARLQADAAQIIARYPDGHSRSALLPMLHLIQSVDGYVSPDGIDFISATLDLPRA 62

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
            +  VATFYT + R P GE        Y +  CT   C +   D I E + +K  +
Sbjct: 63  EISAVATFYTQYKRHPTGE--------YLVGVCTNALCAVMGGDEIWEKVSEKVGV 110


>gi|291334207|gb|ADD93874.1| NADH quinone oxidoreductase E subunit [uncultured marine bacterium
           MedDCM-OCT-S08-C1340]
          Length = 165

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 9/116 (7%)

Query: 42  LDVKFEFTPDNKKRAEAIISIYPVGHERAAVI-PLLDLAQRQHGWLPISAMHYVADFLNL 100
           +D K  F+ +  +  + I S +PV   ++A+I  LL +     G+L    +  +A++L++
Sbjct: 1   MDTKSLFSENITREIDLIRSKFPVDKSKSAIIESLLIIQHDNSGFLSDELIASLANYLDI 60

Query: 101 PKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
            K+ VYEVATFY+MF  KP+G+  I        + CT   C LRNSD I+  I+K+
Sbjct: 61  QKIDVYEVATFYSMFNLKPVGKNTI--------SVCTNVSCMLRNSDGIVNHIEKR 108


>gi|404551123|gb|AFR78158.1| NADH dehydrogenase subunit E [Streptomyces sp. WAC4685]
          Length = 247

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 41/162 (25%)

Query: 56  AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMF 115
           AE II+ YP    R+A++PLL L Q + G +  + M + A+ L L    V  VATFYTM+
Sbjct: 30  AEEIIARYP--GSRSALLPLLHLVQSEEGHVTRTGMKFCAEILGLTTAEVTAVATFYTMY 87

Query: 116 IRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK-------------------- 155
            RKP G+        Y +  CT T C +   DAI E +K+                    
Sbjct: 88  RRKPSGD--------YQVGVCTNTLCAVMGGDAIFEELKEHLGVGNNETTEDGKVTLEHI 139

Query: 156 KCNMMLERQDL-----------EPKDMEQIIDDLKAGKKPAP 186
           +CN   +   +            P   ++I+DDL+AG+   P
Sbjct: 140 ECNAACDFAPVVMVNWEFFDNQTPDSAKKIVDDLRAGRPVEP 181


>gi|154508641|ref|ZP_02044283.1| hypothetical protein ACTODO_01142 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798275|gb|EDN80695.1| NADH dehydrogenase subunit E [Actinomyces odontolyticus ATCC 17982]
          Length = 236

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 12/116 (10%)

Query: 48  FTPDNKKRAEA----IISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
           +TPD   R +A    II+ YP GH R+A++P+L L Q   G++    + +++  L+LP+ 
Sbjct: 3   YTPDTLARLQADATQIIARYPDGHSRSALLPMLHLIQSVDGYVSPDGIDFISATLDLPRA 62

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
            +  VATFYT + R P GE        Y +  CT   C +   D I E + +K  +
Sbjct: 63  EISAVATFYTQYKRHPTGE--------YLVGVCTNALCAVMGGDEIWEKVSEKVGV 110


>gi|261400473|ref|ZP_05986598.1| NADH dehydrogenase, E subunit [Neisseria lactamica ATCC 23970]
 gi|269209732|gb|EEZ76187.1| NADH dehydrogenase, E subunit [Neisseria lactamica ATCC 23970]
          Length = 157

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VAD++ +   + YE
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR   A  E +K++
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGMATGEYLKQR 102


>gi|413000578|emb|CCO25578.1| NADH dehydrogenase subunit E [uncultured bacterium]
          Length = 210

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 8/106 (7%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
           K+ E  ++ +P    ++AV+ +L +AQ + GWLP   +  VAD+L +P + V EVATFY 
Sbjct: 50  KKFEREVAKFPAEQRQSAVMAVLAIAQDETGWLPPEVLQEVADYLRMPAVAVQEVATFYN 109

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           M+  KP+G  +I        + CT  PC L   +     +K+K  +
Sbjct: 110 MYNTKPVGRHKI--------SVCTNLPCALSGGEKAAHHLKQKLGL 147


>gi|395802794|ref|ZP_10482046.1| NADH-quinone oxidoreductase [Flavobacterium sp. F52]
 gi|395435235|gb|EJG01177.1| NADH-quinone oxidoreductase [Flavobacterium sp. F52]
          Length = 176

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 9/103 (8%)

Query: 55  RAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMRVYEVATFYT 113
           R   +IS YP G +++A++P+L   Q  H  WL I     VA+ L +  + VYEV TFYT
Sbjct: 19  RINELISHYPEGKQKSALLPVLHEVQDAHNNWLSIELQDKVAEILQIKPIEVYEVVTFYT 78

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           MF +KPIG        +Y   +C T+ C LR ++ +++   +K
Sbjct: 79  MFNQKPIG--------KYMFEFCQTSCCCLRGAEDLMDYTSEK 113


>gi|296313743|ref|ZP_06863684.1| NADH dehydrogenase, E subunit [Neisseria polysaccharea ATCC 43768]
 gi|296839666|gb|EFH23604.1| NADH dehydrogenase, E subunit [Neisseria polysaccharea ATCC 43768]
          Length = 157

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VAD++ +   + YE
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR      E +KKK
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGMDTGEYLKKK 102


>gi|405982057|ref|ZP_11040381.1| NADH-quinone oxidoreductase, E subunit [Actinomyces neuii BVS029A5]
 gi|404390848|gb|EJZ85914.1| NADH-quinone oxidoreductase, E subunit [Actinomyces neuii BVS029A5]
          Length = 243

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 8/107 (7%)

Query: 53  KKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFY 112
           ++ A+ I+  YP GH+++A+IP+L L Q + G++    + + A  L L +  V  VATFY
Sbjct: 13  RREAQQIMDRYPKGHQQSALIPMLHLVQSEDGFVSADGIAFCAQMLELSRSEVSAVATFY 72

Query: 113 TMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           T F R P G        +Y++  CT   C +   DAI E +  +  +
Sbjct: 73  TQFKRHPAG--------KYNVGICTNALCAVLGGDAIYEAVSSQLGI 111


>gi|146299002|ref|YP_001193593.1| NADH-quinone oxidoreductase [Flavobacterium johnsoniae UW101]
 gi|146153420|gb|ABQ04274.1| NADH dehydrogenase subunit E [Flavobacterium johnsoniae UW101]
          Length = 176

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 9/103 (8%)

Query: 55  RAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMRVYEVATFYT 113
           R   +IS YP G +++A++P+L   Q  H  WL I     VA+ L +  + VYEV TFYT
Sbjct: 19  RINELISHYPEGKQKSALLPVLHEVQDAHNNWLSIELQDKVAEILQIKPIEVYEVVTFYT 78

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           MF +KPIG        +Y   +C T+ C LR ++ +++   +K
Sbjct: 79  MFNQKPIG--------KYMFEFCQTSCCCLRGAEDLMDYTSEK 113


>gi|407938235|ref|YP_006853876.1| NADH-quinone oxidoreductase subunit E [Acidovorax sp. KKS102]
 gi|407896029|gb|AFU45238.1| NADH-quinone oxidoreductase subunit E [Acidovorax sp. KKS102]
          Length = 162

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            T   K R    ++ YP   +++AV+  L + Q++ G++   +   +AD+L + ++ V+E
Sbjct: 2   ITEATKARFAREVAKYPADQKQSAVMACLSIVQQEQGYVSTESEAVIADYLGMAQIAVHE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           V TFY M+ ++P+G        +Y LN CT  PC LR+    L  ++KK
Sbjct: 62  VTTFYNMYNQQPVG--------KYKLNVCTNLPCQLRDGQKALHHLEKK 102


>gi|410940579|ref|ZP_11372383.1| NADH-quinone oxidoreductase, E subunit [Leptospira noguchii str.
           2006001870]
 gi|410784323|gb|EKR73310.1| NADH-quinone oxidoreductase, E subunit [Leptospira noguchii str.
           2006001870]
          Length = 159

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 70/115 (60%), Gaps = 12/115 (10%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP-- 101
           + ++F+  ++KR + ++  +P   +R+ ++P L + QR++G++    M Y+A+ L  P  
Sbjct: 1   MSYKFSETSEKRFQKMLEAFP--DKRSLILPCLYILQRENGFVDQDGMAYIAERLGDPIS 58

Query: 102 KMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
             +VY VATFYT++ +KP+G        +YH+  C T+ C+LR +D I + I K+
Sbjct: 59  LAQVYGVATFYTLYNKKPVG--------KYHIQICGTSSCYLRGNDGIEKHICKR 105


>gi|120609954|ref|YP_969632.1| NADH-quinone oxidoreductase subunit E [Acidovorax citrulli AAC00-1]
 gi|120588418|gb|ABM31858.1| NADH dehydrogenase subunit E [Acidovorax citrulli AAC00-1]
          Length = 175

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 57/97 (58%), Gaps = 8/97 (8%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           ++ YP   +++AV+  L + Q++ GW+   +   +A +L +P++ V+EV TFY M+ ++P
Sbjct: 26  VAKYPPEQKQSAVMACLSIVQQEQGWVSTESEAVIASYLGMPEIAVHEVTTFYNMYNQQP 85

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           +G        +Y LN CT  PC LR+    L  ++KK
Sbjct: 86  LG--------KYKLNVCTNLPCQLRDGQKALHHLEKK 114


>gi|227494507|ref|ZP_03924823.1| possible NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM
           15436]
 gi|226832241|gb|EEH64624.1| possible NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM
           15436]
          Length = 224

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 43/174 (24%)

Query: 51  DNKKRAEA--IISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEV 108
           +N+ RAEA  I++ YP GHER+A++P+L L Q + G++    +   AD L L +  V  V
Sbjct: 7   ENRLRAEAAQIVARYPQGHERSALLPMLHLVQSEDGYVSADGIALCADVLGLTRPEVSAV 66

Query: 109 ATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN---------- 158
           ATFY+ + R P G+        Y++  CT + C +   D I E ++              
Sbjct: 67  ATFYSQYKRHPNGD--------YNVGVCTNSLCAVMGGDQIWETVEGHLGIGHDETTADG 118

Query: 159 -MMLERQDLE--------------------PKDMEQIIDDLKAGKKPAP--GPS 189
            + LER +                      P+    ++DDL AG+  AP  GP+
Sbjct: 119 KITLERLECNAACDYAPVVMVNWEFFDNQTPESTIALVDDLVAGRPVAPTRGPN 172


>gi|419796913|ref|ZP_14322425.1| NADH-quinone oxidoreductase, E subunit [Neisseria sicca VK64]
 gi|385698974|gb|EIG29299.1| NADH-quinone oxidoreductase, E subunit [Neisseria sicca VK64]
          Length = 157

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VAD++ +   + YE
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQAEKGWLAPETIAFVADYIGITPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR      E +KKK
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGMDTGEYLKKK 102


>gi|261364351|ref|ZP_05977234.1| NADH dehydrogenase, E subunit [Neisseria mucosa ATCC 25996]
 gi|340361177|ref|ZP_08683613.1| NADH-quinone oxidoreductase subunit E [Neisseria macacae ATCC
           33926]
 gi|288567615|gb|EFC89175.1| NADH dehydrogenase, E subunit [Neisseria mucosa ATCC 25996]
 gi|339888919|gb|EGQ78336.1| NADH-quinone oxidoreductase subunit E [Neisseria macacae ATCC
           33926]
          Length = 157

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VAD++ +   + YE
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR      E +KKK
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGMDTGEYLKKK 102


>gi|241663480|ref|YP_002981840.1| NADH dehydrogenase subunit E [Ralstonia pickettii 12D]
 gi|309781856|ref|ZP_07676589.1| NADH dehydrogenase (ubiquinone), E subunit [Ralstonia sp.
           5_7_47FAA]
 gi|404396483|ref|ZP_10988277.1| NADH-quinone oxidoreductase, E subunit [Ralstonia sp. 5_2_56FAA]
 gi|240865507|gb|ACS63168.1| NADH-quinone oxidoreductase, E subunit [Ralstonia pickettii 12D]
 gi|308919497|gb|EFP65161.1| NADH dehydrogenase (ubiquinone), E subunit [Ralstonia sp.
           5_7_47FAA]
 gi|348613573|gb|EGY63152.1| NADH-quinone oxidoreductase, E subunit [Ralstonia sp. 5_2_56FAA]
          Length = 167

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 8/103 (7%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
           K  +  ++ YP   +++AV+  L +AQ + GW+    M +VA++L +P + V EVATFY 
Sbjct: 8   KEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEEVATFYN 67

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           M+  KP+G        ++ L+ CT  PC L   +   + +KKK
Sbjct: 68  MYDTKPVG--------RFKLSVCTNLPCALSGGERAADYLKKK 102


>gi|187929289|ref|YP_001899776.1| NADH dehydrogenase subunit E [Ralstonia pickettii 12J]
 gi|187726179|gb|ACD27344.1| NADH-quinone oxidoreductase, E subunit [Ralstonia pickettii 12J]
          Length = 167

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 8/103 (7%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
           K  +  ++ YP   +++AV+  L +AQ + GW+    M +VA++L +P + V EVATFY 
Sbjct: 8   KEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEEVATFYN 67

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           M+  KP+G        ++ L+ CT  PC L   +   + +KKK
Sbjct: 68  MYDTKPVG--------RFKLSVCTNLPCALSGGERAADYLKKK 102


>gi|429744983|ref|ZP_19278438.1| NADH-quinone oxidoreductase, E subunit [Neisseria sp. oral taxon
           020 str. F0370]
 gi|429161642|gb|EKY04024.1| NADH-quinone oxidoreductase, E subunit [Neisseria sp. oral taxon
           020 str. F0370]
          Length = 157

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VA+++ +   + YE
Sbjct: 2   LSAESLKQIDTELAKYPADRRRSAIMGALRIAQTEKGWLAPETIEFVAEYVGISPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  KP+G        +Y L  CT  PC LR      E +KKK
Sbjct: 62  VATFYNMYDIKPVG--------KYKLTVCTNLPCALRGGVDAGEYLKKK 102


>gi|300703646|ref|YP_003745248.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum
           CFBP2957]
 gi|386333043|ref|YP_006029212.1| NADH-quinone oxidoreductase subunit e [Ralstonia solanacearum Po82]
 gi|421891465|ref|ZP_16322265.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum
           K60-1]
 gi|299071309|emb|CBJ42627.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum
           CFBP2957]
 gi|334195491|gb|AEG68676.1| NADH-quinone oxidoreductase subunit e [Ralstonia solanacearum Po82]
 gi|378963138|emb|CCF99013.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum
           K60-1]
          Length = 167

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 8/103 (7%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
           K  +  ++ YP   +++AV+  L +AQ + GW+    M +VA++L +P + V EVATFY 
Sbjct: 8   KEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEEVATFYN 67

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           M+  KP+G        ++ L+ CT  PC L   +   + +KKK
Sbjct: 68  MYDTKPVG--------RFKLSVCTNLPCALSGGERAADYLKKK 102


>gi|241760700|ref|ZP_04758792.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, precursor
           [Neisseria flavescens SK114]
 gi|241318881|gb|EER55407.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, precursor
           [Neisseria flavescens SK114]
          Length = 157

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VAD++ +   + YE
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR      E +KKK
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGMDTGEYLKKK 102


>gi|114321115|ref|YP_742798.1| NADH-quinone oxidoreductase, E subunit [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227509|gb|ABI57308.1| NADH dehydrogenase subunit E [Alkalilimnicola ehrlichii MLHE-1]
          Length = 166

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQ-RQHGWLPISAMHYVADFLNLPKMRVY 106
            TP+ +   +  ++ YP   +++AVIP L + Q    GWL    M  VA++L +  + VY
Sbjct: 10  LTPEMRAEIDHWLTKYPEDQKQSAVIPALHVVQDNSGGWLRREQMDAVAEYLGMDPVAVY 69

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMML 161
           EVATFY+MF  +P+G  ++        N CT   CWL+ ++ I+   +KK  + L
Sbjct: 70  EVATFYSMFDLEPVGRHKV--------NICTNICCWLKGAEDIVAYTEKKLGIKL 116


>gi|161870819|ref|YP_001599992.1| NADH dehydrogenase subunit E [Neisseria meningitidis 053442]
 gi|421553993|ref|ZP_15999944.1| NADH dehydrogenase I chain E [Neisseria meningitidis 98008]
 gi|161596372|gb|ABX74032.1| NADH dehydrogenase I chain E [Neisseria meningitidis 053442]
 gi|402334029|gb|EJU69324.1| NADH dehydrogenase I chain E [Neisseria meningitidis 98008]
          Length = 157

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VAD++ +   + YE
Sbjct: 2   LSTESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR   A  E +K++
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGMATGEYLKQR 102


>gi|194289163|ref|YP_002005070.1| NADH dehydrogenase subunit e [Cupriavidus taiwanensis LMG 19424]
 gi|193222998|emb|CAQ69003.1| NADH:ubiquinone oxidoreductase complex I, chain E [Cupriavidus
           taiwanensis LMG 19424]
          Length = 167

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 8/103 (7%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
           K  +  I+ YP   +++AV+  L +AQ + GW+    M +VA++L +P + V EVATFY 
Sbjct: 10  KEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMQFVANYLEMPPVWVEEVATFYN 69

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           M+  KP+G        +Y L  CT  PC L   +   E +K+K
Sbjct: 70  MYDTKPVG--------KYKLTVCTNLPCALSGGERAGEYLKRK 104


>gi|386845401|ref|YP_006263414.1| NADH dehydrogenase I subunit E [Actinoplanes sp. SE50/110]
 gi|359832905|gb|AEV81346.1| NADH dehydrogenase I subunit E [Actinoplanes sp. SE50/110]
          Length = 372

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 87/210 (41%), Gaps = 57/210 (27%)

Query: 45  KFEFTPDNKKRAE-------AIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADF 97
           + EFTP     AE        I++ YP G ER+A++PLL L Q + G +  + + + A+ 
Sbjct: 18  QVEFTPAAAPLAEKLLGSAQEILARYPAGRERSALLPLLHLVQTEEGHVSPAGVAFCAEV 77

Query: 98  LNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKC 157
           L + K +V  VATFYTM+ R+P GE        Y ++ CT T C +    A+ + + +  
Sbjct: 78  LGINKAQVGAVATFYTMYKRRPTGE--------YLVSVCTNTLCNVLGGQAVYDRLTEHL 129

Query: 158 N-----------MMLERQD---------------------LEPKDMEQIIDDLKAGKKPA 185
                       + LE  +                       P    +++D L+ G++P 
Sbjct: 130 GVGHDETTADGRITLEHAECLAACDYAPVVTVNYDFTVDQATPDSAVELVDSLRNGERPT 189

Query: 186 PGPSGYTSGIGSQSGRFCQAREAYHDMTSL 215
           P          S+  R C  RE  + +   
Sbjct: 190 P----------SRGARICSLREMQYQLAGF 209


>gi|349608696|ref|ZP_08888119.1| hypothetical protein HMPREF1028_00094 [Neisseria sp. GT4A_CT1]
 gi|348611553|gb|EGY61197.1| hypothetical protein HMPREF1028_00094 [Neisseria sp. GT4A_CT1]
          Length = 157

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VAD++ +   + YE
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQAEKGWLSPETIAFVADYIGITPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR      E +KKK
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGMDTGEYLKKK 102


>gi|298370380|ref|ZP_06981696.1| NADH dehydrogenase (ubiquinone), E subunit [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298281840|gb|EFI23329.1| NADH dehydrogenase (ubiquinone), E subunit [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 157

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VAD++ +   + YE
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR      E +KKK
Sbjct: 62  VATFYNMYNLEPVG--------KYKLTVCTNLPCALRGGMDTGEYLKKK 102


>gi|333922082|ref|YP_004495663.1| putative NADH dehydrogenase subunit E [Amycolicicoccus subflavus
           DQS3-9A1]
 gi|333484303|gb|AEF42863.1| putative NADH dehydrogenase subunit E [Amycolicicoccus subflavus
           DQS3-9A1]
          Length = 301

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 41/162 (25%)

Query: 56  AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMF 115
           AE II+ YP    R+A++PLL L Q + G +  + + + A  L L    V  VATFY+M+
Sbjct: 42  AEQIIARYP--ESRSALLPLLHLVQSEDGCITPAGIDFCARHLGLSGAEVAAVATFYSMY 99

Query: 116 IRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK-------------------- 155
            R P G+        YH+  CT T C +   D I   +KK                    
Sbjct: 100 RRTPTGD--------YHVGVCTNTLCAVMGGDMIFAELKKHLGIGHGETTADGKVTLEHI 151

Query: 156 KCN--------MMLERQ---DLEPKDMEQIIDDLKAGKKPAP 186
           +CN        MM+  +   D  P+  +QI+DDL++GK   P
Sbjct: 152 ECNAACDYAPVMMINWEFFDDQTPQSAKQIVDDLRSGKTVTP 193


>gi|389604877|emb|CCA43803.1| NADH dehydrogenase subunit E [Neisseria meningitidis alpha522]
          Length = 157

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + ++AD++ +   + YE
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFIADYIGISPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR   A  E +K++
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGMATGEYLKQR 102


>gi|304389070|ref|ZP_07371114.1| NADH-quinone oxidoreductase subunit E [Neisseria meningitidis ATCC
           13091]
 gi|304336943|gb|EFM03133.1| NADH-quinone oxidoreductase subunit E [Neisseria meningitidis ATCC
           13091]
          Length = 157

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VA+++ +   + YE
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVAEYIGISPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR   A  E +K+K
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGMATGEYLKQK 102


>gi|408530017|emb|CCK28191.1| NADH-quinone oxidoreductase subunit E [Streptomyces davawensis JCM
           4913]
          Length = 274

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 10/103 (9%)

Query: 53  KKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFY 112
           ++ A  +I+ YP    R+A++PLL L Q + G +  + M + AD LNL    V  VATFY
Sbjct: 31  ERDAREVIARYP--DSRSALLPLLHLVQSEEGHVTRTGMQFCADVLNLTTAEVTAVATFY 88

Query: 113 TMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
           TM+ R+P G+        Y +  CT T C +   DAI E +++
Sbjct: 89  TMYRRRPSGD--------YQVGVCTNTLCAVMGGDAIFEALQE 123


>gi|326316103|ref|YP_004233775.1| NADH-quinone oxidoreductase subunit E [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372939|gb|ADX45208.1| NADH-quinone oxidoreductase, E subunit [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 174

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 57/97 (58%), Gaps = 8/97 (8%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           ++ YP   +++AV+  L + Q++ GW+   +   +A+ L +P++ V+EV TFY M+ ++P
Sbjct: 25  VAKYPPEQKQSAVMACLSIVQQEQGWVSAESEAVIAEVLGMPQIAVHEVTTFYNMYNQQP 84

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           +G        +Y LN CT  PC LR+    L  ++KK
Sbjct: 85  LG--------KYKLNVCTNLPCQLRDGQKALHHLEKK 113


>gi|395004004|ref|ZP_10388093.1| NADH-quinone oxidoreductase, E subunit [Acidovorax sp. CF316]
 gi|394318104|gb|EJE54574.1| NADH-quinone oxidoreductase, E subunit [Acidovorax sp. CF316]
          Length = 175

 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 57/97 (58%), Gaps = 8/97 (8%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           ++ YP   +++AV+  L + Q++ GW+  ++   +AD+L + ++ V+EV TFY M+ ++P
Sbjct: 26  VAKYPPEQKQSAVMACLSIVQQEQGWVSTASEAVIADYLGMAQIAVHEVTTFYNMYNQQP 85

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
            G        +Y LN CT  PC LR+    L  ++KK
Sbjct: 86  TG--------KYKLNVCTNLPCQLRDGQKALHHLEKK 114


>gi|365093687|ref|ZP_09330748.1| NADH-quinone oxidoreductase, E subunit [Acidovorax sp. NO-1]
 gi|363414171|gb|EHL21325.1| NADH-quinone oxidoreductase, E subunit [Acidovorax sp. NO-1]
          Length = 162

 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            T   + R    ++ YP   +++AV+  L + Q++ G++   +   +A++L +P++ V+E
Sbjct: 2   ITEATRARFAREVAKYPAEQKQSAVMACLSIVQQEQGFVSAESEAVIAEYLGMPQIAVHE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           V TFY M+ ++P+G        +Y LN CT  PC LR+    L  ++KK
Sbjct: 62  VTTFYNMYNQQPVG--------KYKLNVCTNLPCQLRDGQKALHHLEKK 102


>gi|332528755|ref|ZP_08404732.1| NADH-quinone oxidoreductase, E subunit [Hylemonella gracilis ATCC
           19624]
 gi|332041821|gb|EGI78170.1| NADH-quinone oxidoreductase, E subunit [Hylemonella gracilis ATCC
           19624]
          Length = 181

 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 8/97 (8%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           ++ YP   +++AV+  L + Q++ GW+   A   +A +L +P M V+EV TFY M+ ++P
Sbjct: 25  VAKYPAEQKQSAVMACLSIVQQEQGWVSSEAEAEIAAYLGMPAMAVHEVTTFYNMYNQRP 84

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           +G        ++ LN CT  PC LR+    L  +  K
Sbjct: 85  VG--------KFKLNVCTNLPCQLRDGQKALNHLAAK 113


>gi|118469125|ref|YP_886420.1| NADH dehydrogenase subunit E [Mycobacterium smegmatis str. MC2 155]
 gi|118170412|gb|ABK71308.1| NADH-quinone oxidoreductase chain e [Mycobacterium smegmatis str.
           MC2 155]
          Length = 245

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 83/204 (40%), Gaps = 53/204 (25%)

Query: 53  KKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFY 112
           +  AE II+ YP    R+A++PLL L Q Q G+L  + + + A  L L +  V  VATFY
Sbjct: 34  RADAEQIIARYP--DARSALLPLLHLVQAQDGYLTPAGIGFCAAQLGLTEAEVTAVATFY 91

Query: 113 TMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK----------------- 155
           +M+ R P G+        Y +  CT T C +   DAILE ++                  
Sbjct: 92  SMYRRTPTGD--------YLVGVCTNTLCAIMGGDAILEALEDHLGVHPGQTTPDGRVTL 143

Query: 156 ---KCNMMLERQDL-----------EPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGR 201
              +CN   +   +            P     ++D L++G  P P             G 
Sbjct: 144 EHVECNAACDYAPVVMVNWEFYDNQTPSSARDLVDGLRSGSPPPP-----------TRGS 192

Query: 202 FCQAREAYHDMTSLTGEPHGPWDS 225
            C  RE    +  LT +P+ P  +
Sbjct: 193 LCTFRETARTLAGLT-DPNAPGGA 215


>gi|421100910|ref|ZP_15561529.1| NADH-quinone oxidoreductase, E subunit [Leptospira borgpetersenii
           str. 200901122]
 gi|410796095|gb|EKR98235.1| NADH-quinone oxidoreductase, E subunit [Leptospira borgpetersenii
           str. 200901122]
          Length = 159

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 71/118 (60%), Gaps = 12/118 (10%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP-- 101
           + ++F+  ++KR + ++ ++P   +R+ V+P L + QR++G++    M Y+A+ L  P  
Sbjct: 1   MSYKFSEVSEKRFQKMLEVFP--DKRSLVLPCLYILQRENGFVDQDGMAYIAERLGDPIS 58

Query: 102 KMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
             +VY VATFYT++ +KP+G        +YH+  C T+ C+L  SD I E + K+  +
Sbjct: 59  LAQVYGVATFYTLYNKKPVG--------KYHIQICGTSSCYLLGSDRIEEHLCKRLGI 108


>gi|443288286|ref|ZP_21027380.1| NADH-quinone oxidoreductase, E subunit [Micromonospora lupini str.
           Lupac 08]
 gi|385888616|emb|CCH15454.1| NADH-quinone oxidoreductase, E subunit [Micromonospora lupini str.
           Lupac 08]
          Length = 388

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 8/106 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
           FT + ++RA  II+ YP    R+A++PLL L Q + G++  + + + A+ L L K +V  
Sbjct: 5   FTDETRERAREIIARYPADRSRSALLPLLHLVQAEEGYVSPAGVTFCAEVLGLNKAQVGA 64

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVI 153
           VATFYTM+ RKP G+        + ++ CT T C +     + + +
Sbjct: 65  VATFYTMYKRKPTGD--------FLVSVCTNTMCNVLGGQEVYDTL 102


>gi|365825391|ref|ZP_09367348.1| hypothetical protein HMPREF0045_00984 [Actinomyces graevenitzii
           C83]
 gi|365258279|gb|EHM88289.1| hypothetical protein HMPREF0045_00984 [Actinomyces graevenitzii
           C83]
          Length = 223

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 8/103 (7%)

Query: 53  KKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFY 112
           ++ +  I+  YP GHER+A+IP+L L Q   G++    + + A+ LNL    V  VATFY
Sbjct: 12  REESAQIMGRYPSGHERSALIPMLHLIQSYDGFVSPDGIRFCAETLNLTTSEVSAVATFY 71

Query: 113 TMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
           + F R P G        QYH+  CT   C +   DA+ + + +
Sbjct: 72  SQFRRHPGG--------QYHVGVCTNALCAVMGGDAVWDAVSE 106


>gi|158317832|ref|YP_001510340.1| NADH dehydrogenase subunit E [Frankia sp. EAN1pec]
 gi|158113237|gb|ABW15434.1| NADH-quinone oxidoreductase, E subunit [Frankia sp. EAN1pec]
          Length = 273

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 39/183 (21%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            T   +  A  II+ YP G  R+A++P+L L Q + G +    + + A+ L +    V  
Sbjct: 3   LTEQTRAAAREIIARYPEGRSRSALLPMLHLVQSEQGAVTAEGVEFCAEELGITHAEVSA 62

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN--------- 158
           VATFYTM+ R+P+G+        + ++ CT   C LR  + + E + K            
Sbjct: 63  VATFYTMYKRRPVGD--------WLVSVCTNLSCLLRGGEEVYERLSKNLGVGHDQTTED 114

Query: 159 --MMLERQD--------------------LEPKDMEQIIDDLKAGKKPAPGPSGYTSGIG 196
             + LE  +                    + P   E+I++ L+ G++PAP   G     G
Sbjct: 115 GTITLEHAECLAACDYAPVMTVNYEFYDQVNPDSAEEIVEALRRGERPAPTRGGPLCTFG 174

Query: 197 SQS 199
             S
Sbjct: 175 ESS 177


>gi|220934166|ref|YP_002513065.1| NADH-quinone oxidoreductase subunit E [Thioalkalivibrio
           sulfidophilus HL-EbGr7]
 gi|219995476|gb|ACL72078.1| NADH-quinone oxidoreductase, E subunit [Thioalkalivibrio
           sulfidophilus HL-EbGr7]
          Length = 168

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 8/97 (8%)

Query: 63  YPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGE 122
           YP    ++AV+  L   Q +HG+L    M  VA+++ +P + VYEVA+FY+MF  KP+G 
Sbjct: 28  YPQDQRQSAVLGALRAVQHEHGYLSTEMMDAVAEYIGMPDIAVYEVASFYSMFELKPVGR 87

Query: 123 ERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
             I          CT   C LR SD I+E I+ K  +
Sbjct: 88  HTIAV--------CTNISCMLRGSDRIVEHIENKLGI 116


>gi|455648932|gb|EMF27766.1| NADH dehydrogenase subunit E [Streptomyces gancidicus BKS 13-15]
          Length = 286

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 41/162 (25%)

Query: 56  AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMF 115
           A AI++ YP    R+A++P+L L Q + G +  + M + AD L L    V  VATFYTM+
Sbjct: 34  ARAIVARYP--DSRSALLPMLHLVQSEEGHVTRTGMQFCADMLGLTTAEVTAVATFYTMY 91

Query: 116 IRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK-------------------- 155
            R+P G+        Y +  CT T C +   DAI E +++                    
Sbjct: 92  RRRPSGD--------YQVGVCTNTLCAVMGGDAIFEELQEHLGVGNGETTADGKVTLEHI 143

Query: 156 KCNMMLERQDL-----------EPKDMEQIIDDLKAGKKPAP 186
           +CN   +   +            P+   +++DDL+AG+  AP
Sbjct: 144 ECNAACDFAPVVMVNWEFFDNQTPESARRMVDDLRAGRPVAP 185


>gi|333376389|ref|ZP_08468172.1| NADH-quinone oxidoreductase subunit E [Kingella kingae ATCC 23330]
 gi|381402244|ref|ZP_09927118.1| NADH dehydrogenase subunit E [Kingella kingae PYKK081]
 gi|332968231|gb|EGK07308.1| NADH-quinone oxidoreductase subunit E [Kingella kingae ATCC 23330]
 gi|380832774|gb|EIC12668.1| NADH dehydrogenase subunit E [Kingella kingae PYKK081]
          Length = 157

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + D+ K+ +  ++ YP    R+AV+  L +AQ + G+L    + +VA ++ +P +  +E
Sbjct: 2   LSADSLKQIDTELAKYPADQRRSAVMGALRIAQVEKGYLAPETIEFVAQYIGIPAIAAHE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  KP+G        +Y L  CT  PC LR      E +K+K
Sbjct: 62  VATFYNMYDLKPVG--------KYKLTVCTNLPCALRGGVDAGEYLKQK 102


>gi|300311099|ref|YP_003775191.1| NADH dehydrogenase I subunit E [Herbaspirillum seropedicae SmR1]
 gi|300073884|gb|ADJ63283.1| NADH dehydrogenase I (Chain E) oxidoreductase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 159

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 8/103 (7%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
           K+ +  ++ YP    ++AV+  L +AQ +HGWLP      +AD++ +P + V EVATFY 
Sbjct: 9   KKIDRELAKYPADQRQSAVMSALRIAQVEHGWLPAELQQEIADYIGMPAVAVQEVATFYN 68

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           MF   P+G+ +I          CT  PC L   +     +K+K
Sbjct: 69  MFNTSPVGKHKI--------TVCTNLPCLLSGGERAAHHLKQK 103


>gi|296274179|ref|YP_003656810.1| NADH-quinone oxidoreductase subunit E [Arcobacter nitrofigilis DSM
           7299]
 gi|296098353|gb|ADG94303.1| NADH-quinone oxidoreductase, E subunit [Arcobacter nitrofigilis DSM
           7299]
          Length = 158

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 10/111 (9%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
            KF++T +N+++ +     YP     A ++P L L Q Q GW+   AM +VAD +    +
Sbjct: 2   AKFQYTKENEEKFQITAKKYP--KIDAMLLPALWLVQEQEGWVSPEAMIFVADKIGKQPI 59

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIK 154
            VYE ATFYTMF  KPIG         YH+  C T  C L  ++ + + IK
Sbjct: 60  EVYEFATFYTMFNLKPIG--------TYHIELCKTLSCMLMGANNLKKFIK 102


>gi|237746747|ref|ZP_04577227.1| NADH-quinone oxidoreductase subunit E [Oxalobacter formigenes
           HOxBLS]
 gi|229378098|gb|EEO28189.1| NADH-quinone oxidoreductase subunit E [Oxalobacter formigenes
           HOxBLS]
          Length = 158

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ ++ E  ++ +P   +R+A I  L +AQ + GWL    M  +AD+L +P + + E
Sbjct: 3   LSEESYRKIEKELAKFPATKKRSAAIAALTIAQDEKGWLSPEVMREIADYLGVPAVAIEE 62

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VA+FY+MF  +P+G        +Y +  C   PC +  SD   + +K+K
Sbjct: 63  VASFYSMFNTRPVG--------KYKIAVCCNLPCEMTGSDVTAQYLKEK 103


>gi|399986431|ref|YP_006566780.1| NuoE, NADH dehydrogenase subunit [Mycobacterium smegmatis str. MC2
           155]
 gi|399230992|gb|AFP38485.1| NuoE, NADH dehydrogenase subunit [Mycobacterium smegmatis str. MC2
           155]
          Length = 252

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 83/204 (40%), Gaps = 53/204 (25%)

Query: 53  KKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFY 112
           +  AE II+ YP    R+A++PLL L Q Q G+L  + + + A  L L +  V  VATFY
Sbjct: 41  RADAEQIIARYP--DARSALLPLLHLVQAQDGYLTPAGIGFCAAQLGLTEAEVTAVATFY 98

Query: 113 TMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK----------------- 155
           +M+ R P G+        Y +  CT T C +   DAILE ++                  
Sbjct: 99  SMYRRTPTGD--------YLVGVCTNTLCAIMGGDAILEALEDHLGVHPGQTTPDGRVTL 150

Query: 156 ---KCNMMLERQDL-----------EPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGR 201
              +CN   +   +            P     ++D L++G  P P             G 
Sbjct: 151 EHVECNAACDYAPVVMVNWEFYDNQTPSSARDLVDGLRSGSPPPP-----------TRGS 199

Query: 202 FCQAREAYHDMTSLTGEPHGPWDS 225
            C  RE    +  LT +P+ P  +
Sbjct: 200 LCTFRETARTLAGLT-DPNAPGGA 222


>gi|121609758|ref|YP_997565.1| NADH-quinone oxidoreductase subunit E [Verminephrobacter eiseniae
           EF01-2]
 gi|121554398|gb|ABM58547.1| NADH-quinone oxidoreductase, E subunit [Verminephrobacter eiseniae
           EF01-2]
          Length = 165

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 8/97 (8%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           ++ YP   +++AV+  L + Q++ G +   +   VAD+L +  + V+EVATFY M+ R+P
Sbjct: 14  VAKYPADQKQSAVMACLAIVQQEQGHVSADSQALVADYLGMAPIAVHEVATFYNMYNRQP 73

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           +G        QY +N CT  PC LR     L+ +++K
Sbjct: 74  VG--------QYKINVCTNLPCQLRGGRQALQHLERK 102


>gi|386828044|ref|ZP_10115151.1| NADH-quinone oxidoreductase, E subunit [Beggiatoa alba B18LD]
 gi|386428928|gb|EIJ42756.1| NADH-quinone oxidoreductase, E subunit [Beggiatoa alba B18LD]
          Length = 181

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 9/110 (8%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMRVY 106
            + D K + +  I+ YP   +R+AV+P L L Q  +G WL    M  +AD+L +  + VY
Sbjct: 26  LSADIKAQIDRWIAKYPSDWKRSAVMPALTLVQDANGGWLTTELMDAIADYLGMEPIAVY 85

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           EVATFY+M+  KP+G        +Y +  CT   C L  SD I+E ++ K
Sbjct: 86  EVATFYSMYEHKPVG--------RYKICVCTNVSCMLCGSDEIVEHLQHK 127


>gi|416159333|ref|ZP_11605797.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           N1568]
 gi|433472628|ref|ZP_20429998.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           97021]
 gi|433481052|ref|ZP_20438324.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           2006087]
 gi|433483174|ref|ZP_20440412.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           2002038]
 gi|433485275|ref|ZP_20442481.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           97014]
 gi|325129043|gb|EGC51893.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           N1568]
 gi|432212512|gb|ELK68450.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           97021]
 gi|432219405|gb|ELK75252.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           2006087]
 gi|432223620|gb|ELK79400.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           2002038]
 gi|432224735|gb|ELK80498.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           97014]
          Length = 157

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VA+++ +   + YE
Sbjct: 2   LSAESLKQIDTELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVAEYIGISPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR      E +KKK
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGMDTGEYLKKK 102


>gi|190891290|ref|YP_001977832.1| NADH dehydrogenase subunit E [Rhizobium etli CIAT 652]
 gi|190696569|gb|ACE90654.1| NADH-ubiquinone oxidoreductase protein, chain E [Rhizobium etli
           CIAT 652]
          Length = 339

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 75/169 (44%), Gaps = 47/169 (27%)

Query: 79  AQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTT 138
           AQ Q GW+  +A+  +AD L++  +RV EVATFYT F   P+G        + H+  C T
Sbjct: 3   AQEQDGWVTRAAIEKIADMLDMAYIRVLEVATFYTQFQLHPVG-------TRAHVQVCGT 55

Query: 139 TPCWLRNSDAILEVIKKKCNMM-LER------------------------------QDLE 167
           TPC LR S+A++ V K K +    ER                              +DL 
Sbjct: 56  TPCMLRGSEALMSVCKSKIHAHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLT 115

Query: 168 PKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLT 216
           P  +E+IID   AG       +G +   G+Q  R   A E     TSLT
Sbjct: 116 PARLEEIIDTFAAG-------NGASIKPGTQIDRIFSAPEG--GPTSLT 155


>gi|255067285|ref|ZP_05319140.1| NADH dehydrogenase, E subunit [Neisseria sicca ATCC 29256]
 gi|255048436|gb|EET43900.1| NADH dehydrogenase, E subunit [Neisseria sicca ATCC 29256]
          Length = 157

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 8/94 (8%)

Query: 63  YPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGE 122
           YP    R+A++  L +AQ + GWL    + +VAD++ +   + YEVATFY M+  +P+G 
Sbjct: 17  YPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYEVATFYNMYDLEPVG- 75

Query: 123 ERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
                  +Y L  CT  PC LR      E +KKK
Sbjct: 76  -------KYKLTVCTNLPCALRGGMDTGEYLKKK 102


>gi|441206114|ref|ZP_20972905.1| NADH-quinone oxidoreductase subunit E [Mycobacterium smegmatis
           MKD8]
 gi|440628662|gb|ELQ90458.1| NADH-quinone oxidoreductase subunit E [Mycobacterium smegmatis
           MKD8]
          Length = 242

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 83/204 (40%), Gaps = 53/204 (25%)

Query: 53  KKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFY 112
           +  AE I++ YP    R+A++PLL L Q Q G+L  + + + A  L L +  V  VATFY
Sbjct: 31  RADAEQIVARYP--DARSALLPLLHLVQAQDGYLTPAGIGFCATQLGLTEAEVTAVATFY 88

Query: 113 TMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK----------------- 155
           +M+ R P G+        Y +  CT T C +   DAILE ++                  
Sbjct: 89  SMYRRTPTGD--------YLVGVCTNTLCAIMGGDAILEALEDHLGVHPGQTTPDGRVTL 140

Query: 156 ---KCNMMLERQDL-----------EPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGR 201
              +CN   +   +            P     ++D L++G  P P             G 
Sbjct: 141 EHVECNAACDYAPVVMVNWEFYDNQTPSSARDLVDGLRSGSPPPP-----------TRGS 189

Query: 202 FCQAREAYHDMTSLTGEPHGPWDS 225
            C  RE    +  LT +P+ P  +
Sbjct: 190 LCTFRETARTLAGLT-DPNAPGGA 212


>gi|293603923|ref|ZP_06686338.1| NADH-quinone oxidoreductase subunit E [Achromobacter piechaudii
           ATCC 43553]
 gi|421482734|ref|ZP_15930314.1| NADH dehydrogenase subunit E [Achromobacter piechaudii HLE]
 gi|292817760|gb|EFF76826.1| NADH-quinone oxidoreductase subunit E [Achromobacter piechaudii
           ATCC 43553]
 gi|400199045|gb|EJO32001.1| NADH dehydrogenase subunit E [Achromobacter piechaudii HLE]
          Length = 164

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 8/97 (8%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           ++ +P    ++A++  L +AQ + GWL    +  VA+++ +P + V EVATFY MF  KP
Sbjct: 15  LAKFPADQRQSAIMASLAIAQEEKGWLATETIEDVANYIGVPPIAVQEVATFYNMFDVKP 74

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           +G+ +I          CT  PC LR+ D   E +K+K
Sbjct: 75  VGKNKIAV--------CTNLPCALRDGDRAGEYLKRK 103


>gi|334129594|ref|ZP_08503398.1| NADH-quinone oxidoreductase subunit E [Methyloversatilis
           universalis FAM5]
 gi|333445279|gb|EGK73221.1| NADH-quinone oxidoreductase subunit E [Methyloversatilis
           universalis FAM5]
          Length = 171

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 8/97 (8%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           ++ YP G   +AV+  L +AQ Q+GWL   A+  VA  LN+P M   EVATFY M+  KP
Sbjct: 28  VAKYPEGQAISAVMAGLRIAQEQNGWLTPEAIEAVATHLNIPPMAAMEVATFYNMYDVKP 87

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           +G        ++ +  CT  PC L   +   E +K+K
Sbjct: 88  VG--------RWKITVCTNLPCALSGGEQAAEYVKEK 116


>gi|227497898|ref|ZP_03928078.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434]
 gi|226832690|gb|EEH65073.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434]
          Length = 240

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 12/116 (10%)

Query: 48  FTPDNKKR----AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
           ++P+ + R     E I S YP GHER+A+IP+L L Q + G++    +   A+ L L   
Sbjct: 20  YSPETEARLRADIEQIKSRYPSGHERSALIPMLHLVQSEDGYVAPRGIALCAETLGLTLA 79

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
            V  VATFY+ F R P GE        YH+  CT   C +   D I + + +   +
Sbjct: 80  EVSAVATFYSQFRRHPAGE--------YHVGVCTNALCAVMGGDEIWQAVAEHTGL 127


>gi|225164243|ref|ZP_03726516.1| NADH-quinone oxidoreductase, E subunit [Diplosphaera colitermitum
           TAV2]
 gi|224801148|gb|EEG19471.1| NADH-quinone oxidoreductase, E subunit [Diplosphaera colitermitum
           TAV2]
          Length = 163

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 10/109 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
             P+  +R + +I+ YPV  +R+A +PLL L Q   G++   AM ++AD L + ++ V E
Sbjct: 3   LKPETLQRIDEVITHYPV--KRSATLPLLHLIQEDAGYISDEAMEWIADKLGIERIHVLE 60

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           V TFY MF RKPIG        + H+  C T  C L     + E ++K+
Sbjct: 61  VVTFYPMFRRKPIG--------RRHIKVCRTLSCALMGGYKVCETMQKE 101


>gi|359684850|ref|ZP_09254851.1| NADH dehydrogenase subunit I E [Leptospira santarosai str.
           2000030832]
 gi|422002658|ref|ZP_16349894.1| NADH dehydrogenase I E subunit [Leptospira santarosai serovar
           Shermani str. LT 821]
 gi|417258749|gb|EKT88135.1| NADH dehydrogenase I E subunit [Leptospira santarosai serovar
           Shermani str. LT 821]
          Length = 159

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 66/106 (62%), Gaps = 12/106 (11%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP--KM 103
           + F+ +++KR + ++ ++P   +R+ ++P L + QR++G++  + M Y+A  L  P    
Sbjct: 3   YRFSEESEKRFQKMLEVFP--EKRSLILPCLYILQRENGFVDQAGMDYIATRLGDPISLA 60

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           +VY VATFYT++ +KP+G        +YH+  C T+ C+L+ +D I
Sbjct: 61  QVYGVATFYTLYNKKPVG--------KYHIQICGTSSCYLQGNDRI 98


>gi|33597907|ref|NP_885550.1| NADH dehydrogenase subunit E [Bordetella parapertussis 12822]
 gi|33574336|emb|CAE38672.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
           parapertussis]
          Length = 164

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 8/103 (7%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
           K+ +  ++ +P    ++A++  L +AQ + GWLP   +  VA+++ +P + V EVATFY 
Sbjct: 9   KKIDRELAKFPADQRQSAIMASLAIAQEEKGWLPAEILEDVANYIGVPPIAVQEVATFYN 68

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           MF  KP+G  +I          CT  PC LR+ +   + +K+K
Sbjct: 69  MFDVKPVGTHKIAV--------CTNLPCALRDGEKAADYLKRK 103


>gi|241763292|ref|ZP_04761349.1| NADH-quinone oxidoreductase, E subunit [Acidovorax delafieldii 2AN]
 gi|241367567|gb|EER61854.1| NADH-quinone oxidoreductase, E subunit [Acidovorax delafieldii 2AN]
          Length = 163

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 63/109 (57%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            T   K R    ++ YP   +++AV+  L + Q++ G++  ++   +A++L +P++ V+E
Sbjct: 2   ITEATKARFAREVAKYPPEQKQSAVMACLSIVQQELGYVSEASEAAIAEYLGMPQIAVHE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           V TFY M+ ++P+G        +Y LN CT  PC LR+    LE +++K
Sbjct: 62  VTTFYNMYNQQPVG--------KYKLNVCTNLPCLLRDGGKALEHLEQK 102


>gi|374609170|ref|ZP_09681967.1| NADH-quinone oxidoreductase, E subunit [Mycobacterium tusciae
           JS617]
 gi|373552910|gb|EHP79513.1| NADH-quinone oxidoreductase, E subunit [Mycobacterium tusciae
           JS617]
          Length = 248

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 41/162 (25%)

Query: 56  AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMF 115
           AE II+ YP    R+A++PLL L Q Q G+L  + + + A  L+L    V  VATFYTM+
Sbjct: 36  AEQIIAKYP--KARSALLPLLHLVQAQDGYLTAAGIKFCARRLDLTDAEVTAVATFYTMY 93

Query: 116 IRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK-------------------- 155
            R P GE        + +  CT T C +   DAIL+ ++                     
Sbjct: 94  RRSPTGE--------FLVGVCTNTLCAVMGGDAILDTLQDHLGVDVGQTTDDGRVTLEHV 145

Query: 156 KCNMMLERQDL-----------EPKDMEQIIDDLKAGKKPAP 186
           +CN   +   +            P+   +++D L+AG+ P P
Sbjct: 146 ECNAACDYAPVVMVNWEFFDNQTPRSARELVDALRAGQPPVP 187


>gi|89900290|ref|YP_522761.1| NADH-quinone oxidoreductase subunit E [Rhodoferax ferrireducens
           T118]
 gi|89345027|gb|ABD69230.1| NADH-quinone oxidoreductase, E subunit [Rhodoferax ferrireducens
           T118]
          Length = 162

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++K R    ++ YPV  +++AV+  L + Q++ G++   +   VA+FL +  M V+E
Sbjct: 2   ISEESKVRFAQEVAKYPVDQKQSAVMACLAIVQQESGYVSAESEVLVAEFLGMAPMAVHE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           V TFY M+ ++P+G        +Y LN CT  PC LR+    L+ ++ K
Sbjct: 62  VTTFYNMYNQQPVG--------KYKLNVCTNLPCQLRDGGKALKHLEHK 102


>gi|33592011|ref|NP_879655.1| NADH dehydrogenase subunit E [Bordetella pertussis Tohama I]
 gi|33602812|ref|NP_890372.1| NADH dehydrogenase subunit E [Bordetella bronchiseptica RB50]
 gi|384203313|ref|YP_005589052.1| NADH dehydrogenase subunit E [Bordetella pertussis CS]
 gi|408416222|ref|YP_006626929.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
           pertussis 18323]
 gi|410421287|ref|YP_006901736.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
           bronchiseptica MO149]
 gi|410473876|ref|YP_006897157.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
           parapertussis Bpp5]
 gi|412341854|ref|YP_006970609.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
           bronchiseptica 253]
 gi|427815828|ref|ZP_18982892.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
           bronchiseptica 1289]
 gi|427818376|ref|ZP_18985439.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
           bronchiseptica D445]
 gi|427825761|ref|ZP_18992823.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
           bronchiseptica Bbr77]
 gi|33571655|emb|CAE41148.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
           pertussis Tohama I]
 gi|33577254|emb|CAE35811.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
           bronchiseptica RB50]
 gi|332381427|gb|AEE66274.1| NADH dehydrogenase subunit E [Bordetella pertussis CS]
 gi|401778392|emb|CCJ63804.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
           pertussis 18323]
 gi|408443986|emb|CCJ50683.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
           parapertussis Bpp5]
 gi|408448582|emb|CCJ60265.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
           bronchiseptica MO149]
 gi|408771688|emb|CCJ56492.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
           bronchiseptica 253]
 gi|410566828|emb|CCN24397.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
           bronchiseptica 1289]
 gi|410569376|emb|CCN17477.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
           bronchiseptica D445]
 gi|410591026|emb|CCN06121.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
           bronchiseptica Bbr77]
          Length = 164

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 8/103 (7%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
           K+ +  ++ +P    ++A++  L +AQ + GWLP   +  VA+++ +P + V EVATFY 
Sbjct: 9   KKIDRELAKFPADQRQSAIMASLAIAQEEKGWLPAEILEDVANYIGVPPIAVQEVATFYN 68

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           MF  KP+G  +I          CT  PC LR+ +   + +K+K
Sbjct: 69  MFDVKPVGTHKIAV--------CTNLPCALRDGEKAADYLKRK 103


>gi|406973533|gb|EKD96933.1| hypothetical protein ACD_23C01179G0002 [uncultured bacterium]
          Length = 163

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 62/109 (56%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++K R    ++ YP   +++AV+  L + Q++ G++   +  +VAD+L +  + V+E
Sbjct: 2   ISEESKARFAKEVAKYPADQKQSAVMACLTIVQQELGYVSAESEQFVADYLGMAPIAVHE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           V +FY M+ ++P+G        +Y LN CT  PC LR+    +  +K+K
Sbjct: 62  VTSFYNMYNQQPVG--------KYKLNVCTNLPCQLRDGGKAMAHLKEK 102


>gi|418399840|ref|ZP_12973386.1| NADH-quinone oxidoreductase subunit E [Sinorhizobium meliloti
           CCNWSX0020]
 gi|359506168|gb|EHK78684.1| NADH-quinone oxidoreductase subunit E [Sinorhizobium meliloti
           CCNWSX0020]
          Length = 169

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 59/99 (59%), Gaps = 10/99 (10%)

Query: 53  KKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFY 112
           ++  EA  + YP    R+A++P L +AQ++HG LP   +  VA+ L + ++ VYE+ATFY
Sbjct: 4   REEIEAAAARYP--DRRSAIMPALMIAQKEHGHLPGPVLEDVAEILGVERVWVYELATFY 61

Query: 113 TMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
           T+F  +PIG        ++HL  C    C L  S+A+LE
Sbjct: 62  TLFHTEPIG--------RFHLQLCDNVSCMLCGSEALLE 92


>gi|399040083|ref|ZP_10735537.1| NADH-quinone oxidoreductase, E subunit [Rhizobium sp. CF122]
 gi|398061968|gb|EJL53754.1| NADH-quinone oxidoreductase, E subunit [Rhizobium sp. CF122]
          Length = 170

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 61/99 (61%), Gaps = 10/99 (10%)

Query: 53  KKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFY 112
           +++ +A  + YP  ++R+A++P L +AQ++HG+LP   +  VAD L + +M VYE+ATFY
Sbjct: 4   REKIKAAAARYP--NQRSAIMPALLIAQKEHGYLPGPVLEEVADILGVERMWVYELATFY 61

Query: 113 TMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
           T+F  +P+G         +HL  C    C L  S+ +L+
Sbjct: 62  TLFHTEPVG--------LFHLQLCDNVSCMLCGSEDLLK 92


>gi|253998387|ref|YP_003050450.1| NADH-quinone oxidoreductase subunit E [Methylovorus glucosetrophus
           SIP3-4]
 gi|313200463|ref|YP_004039121.1| NADH-quinone oxidoreductase subunit E [Methylovorus sp. MP688]
 gi|253985066|gb|ACT49923.1| NADH-quinone oxidoreductase, E subunit [Methylovorus glucosetrophus
           SIP3-4]
 gi|312439779|gb|ADQ83885.1| NADH-quinone oxidoreductase, E subunit [Methylovorus sp. MP688]
          Length = 157

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 57/97 (58%), Gaps = 8/97 (8%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           ++ YP    +AAV+  L +AQ + GWL    + +VA++L +P +   EVA+FY M+  +P
Sbjct: 14  LTKYPADRRQAAVMSALRIAQDEKGWLSKDTVAFVAEYLGIPPIAALEVASFYNMYELEP 73

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           +G        QY +  CT   C LR+SD I++ ++++
Sbjct: 74  VG--------QYKITVCTNISCMLRDSDVIVDHLQER 102


>gi|381208270|ref|ZP_09915341.1| NADH-ubiquinone oxidoreductase chain E [SAR324 cluster bacterium
           JCVI-SC AAA005]
          Length = 160

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 64/110 (58%), Gaps = 11/110 (10%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVY 106
           F+P+ +++ + ++S YP+   R A++PLL +AQ+++ GWL    +++VAD   +    V 
Sbjct: 2   FSPEMQQQVDRLLSRYPI--RRNALLPLLHMAQKENQGWLDSKWVNHVADLCEVSPTHVE 59

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
            VATFYTMF  +P G        +YHL  CT  PC L     ILE ++ K
Sbjct: 60  GVATFYTMFRFRPPG--------KYHLQVCTCVPCCLVGGPEILEHLEHK 101


>gi|325267319|ref|ZP_08133981.1| NADH-quinone oxidoreductase subunit E [Kingella denitrificans ATCC
           33394]
 gi|324981256|gb|EGC16906.1| NADH-quinone oxidoreductase subunit E [Kingella denitrificans ATCC
           33394]
          Length = 157

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 8/97 (8%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           ++ YP    R+A++  L +AQ + G+L    + YVA ++ +P +  YEVATFY M+  KP
Sbjct: 14  LAKYPADQRRSAIMGALRIAQTELGYLAPETIEYVAQYVGIPAIAAYEVATFYNMYDLKP 73

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           +G        +Y L  CT  PC LR      E +K+K
Sbjct: 74  VG--------KYKLTVCTNLPCALRGGVDAGEYLKQK 102


>gi|83746301|ref|ZP_00943354.1| NADH-quinone oxidoreductase chain E [Ralstonia solanacearum UW551]
 gi|83727051|gb|EAP74176.1| NADH-quinone oxidoreductase chain E [Ralstonia solanacearum UW551]
          Length = 167

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 8/103 (7%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
           K  +  ++ YP   +++AV+  L +AQ + GW+    M +VA++L +P + V EVATFY 
Sbjct: 8   KEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEEVATFYN 67

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           M+  KP+G        ++ L+ CT  PC L   +   + +K+K
Sbjct: 68  MYDTKPVG--------RFKLSVCTNLPCALSGGERAADYLKQK 102


>gi|452124074|ref|ZP_21936658.1| NADH dehydrogenase subunit E [Bordetella holmesii F627]
 gi|452127459|ref|ZP_21940040.1| NADH dehydrogenase subunit E [Bordetella holmesii H558]
 gi|451923304|gb|EMD73445.1| NADH dehydrogenase subunit E [Bordetella holmesii F627]
 gi|451926739|gb|EMD76869.1| NADH dehydrogenase subunit E [Bordetella holmesii H558]
          Length = 164

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 8/97 (8%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           ++ +P    ++A++  L +AQ + GWLP   +  VA+++ +P + V EVATFY MF  KP
Sbjct: 15  LAKFPADQRQSAIMASLAIAQEEKGWLPAEIIEDVANYIGVPPIAVQEVATFYNMFDVKP 74

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           +G  +I        + CT  PC LR+ +   + +K+K
Sbjct: 75  VGTHKI--------SVCTNLPCVLRDGEKAADYLKRK 103


>gi|409405593|ref|ZP_11254055.1| NADH dehydrogenase I subunit E [Herbaspirillum sp. GW103]
 gi|386434142|gb|EIJ46967.1| NADH dehydrogenase I subunit E [Herbaspirillum sp. GW103]
          Length = 163

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 8/103 (7%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
           K+ +  ++ YP    ++AV+  L +AQ +HGWLP      +AD++ +P + V EVATFY 
Sbjct: 13  KKIDRELAKYPADQRQSAVMSALRIAQVEHGWLPAELQQEIADYIGMPAVAVQEVATFYN 72

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           MF   P+G+ +I          CT  PC L   +     +K K
Sbjct: 73  MFNTSPVGKHKITV--------CTNLPCLLSGGERAAHHLKHK 107


>gi|398346423|ref|ZP_10531126.1| NADH dehydrogenase subunit I E [Leptospira broomii str. 5399]
          Length = 159

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 70/118 (59%), Gaps = 12/118 (10%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP--KM 103
           ++F+ +++KR   ++ ++P   +R+ ++P L L Q++ G++    M Y+A  +  P    
Sbjct: 3   YQFSQESEKRFGKLLEMFP--DKRSVILPGLYLLQKEKGYVDREGMEYLAGKIGAPISLA 60

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMML 161
           +VY VATFYT++ +KP+G        ++H+  C T+ C++R +DAI + I  K  + L
Sbjct: 61  QVYGVATFYTLYNKKPVG--------KFHIQICGTSSCYIRGNDAIEKHICSKLGVKL 110


>gi|374365453|ref|ZP_09623543.1| NADH dehydrogenase subunit E [Cupriavidus basilensis OR16]
 gi|373103026|gb|EHP44057.1| NADH dehydrogenase subunit E [Cupriavidus basilensis OR16]
          Length = 168

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 8/103 (7%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
           K  +  I+ YP   +++AV+  L +AQ + GW+    M +VA +L++P + V EVATFY 
Sbjct: 8   KEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMQFVASYLDMPPVWVEEVATFYN 67

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           M+  KP+G        +Y L  CT  PC L   +   + +K+K
Sbjct: 68  MYDTKPVG--------KYKLTVCTNLPCALSGGERAGDYLKQK 102


>gi|291437934|ref|ZP_06577324.1| NADH dehydrogenase subunit E [Streptomyces ghanaensis ATCC 14672]
 gi|291340829|gb|EFE67785.1| NADH dehydrogenase subunit E [Streptomyces ghanaensis ATCC 14672]
          Length = 286

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 41/162 (25%)

Query: 56  AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMF 115
           A  +I+ YP    R+A++PLL L Q + G +  + M + AD L L    V  VATFYTM+
Sbjct: 34  AREVIARYP--DSRSALLPLLHLVQSEEGHVTRTGMQFCADVLGLTTAEVTAVATFYTMY 91

Query: 116 IRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK-------------------- 155
            R+P G+        Y +  CT T C +   DAI E +++                    
Sbjct: 92  RRRPSGD--------YQVGVCTNTLCAVMGGDAIFEELQEHLGVGNGETTDDGKVTLEHI 143

Query: 156 KCNMMLERQDL-----------EPKDMEQIIDDLKAGKKPAP 186
           +CN   +   +            P+  ++++DDL+AG+  AP
Sbjct: 144 ECNAACDYAPVVMVNWEFFDNQTPESAKRMVDDLRAGRPVAP 185


>gi|225077020|ref|ZP_03720219.1| hypothetical protein NEIFLAOT_02072 [Neisseria flavescens
           NRL30031/H210]
 gi|224951577|gb|EEG32786.1| hypothetical protein NEIFLAOT_02072 [Neisseria flavescens
           NRL30031/H210]
          Length = 157

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VA+++ +   + YE
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVAEYIGISPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR      E +KKK
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGMDTGEYLKKK 102


>gi|429196917|ref|ZP_19188851.1| NADH dehydrogenase subunit E [Streptomyces ipomoeae 91-03]
 gi|428667397|gb|EKX66486.1| NADH dehydrogenase subunit E [Streptomyces ipomoeae 91-03]
          Length = 304

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 45/167 (26%)

Query: 53  KKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFY 112
           ++ A  +I+ YP    R+A++PLL L Q + G +  + M + AD L L    V  VATFY
Sbjct: 29  ERDAADVIARYP--DSRSALLPLLHLVQSEEGHVTRTGMQFCADVLGLTTAEVTAVATFY 86

Query: 113 TMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK----------------- 155
           TM+ RKP G+        Y +  CT T C +   DAI E ++                  
Sbjct: 87  TMYRRKPSGD--------YQVGVCTNTLCAVMGGDAIFEALQDHLGVGNGETTDDGKVTL 138

Query: 156 ---KCNM-------------MLERQDLEPKDMEQIIDDLKAGKKPAP 186
              +CN                + Q +E    +Q++DDL+AG +  P
Sbjct: 139 EHIECNAACDFAPVVMVNWEFFDNQTVE--SAKQLVDDLRAGVQAEP 183


>gi|297538952|ref|YP_003674721.1| NADH-quinone oxidoreductase subunit E [Methylotenera versatilis
           301]
 gi|297258299|gb|ADI30144.1| NADH-quinone oxidoreductase, E subunit [Methylotenera versatilis
           301]
          Length = 157

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            +P   ++ +  ++ YPV   +AAV+  L + Q + GWL   ++  VA +L +P++   E
Sbjct: 2   LSPQATEKIDYELTKYPVDQRQAAVMSALRIVQTERGWLSKESITEVAQYLGMPEIAAME 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VA+FY M+   P+G        +Y +  CT   C LR+SD I+  +K K
Sbjct: 62  VASFYNMYDLSPVG--------KYKITICTNISCMLRDSDEIVNHLKTK 102


>gi|415950780|ref|ZP_11557000.1| NADH-quinone oxidoreductase subunit E [Herbaspirillum frisingense
           GSF30]
 gi|407757586|gb|EKF67541.1| NADH-quinone oxidoreductase subunit E [Herbaspirillum frisingense
           GSF30]
          Length = 159

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 8/103 (7%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
           K+ +  ++ YP    ++AV+  L +AQ +HGWLP      +AD++ +P + V EVATFY 
Sbjct: 9   KKIDRELAKYPADQRQSAVMSALRIAQVEHGWLPAELQQEIADYIGMPAVAVQEVATFYN 68

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           MF   P+G+ +I          CT  PC L   +     +K K
Sbjct: 69  MFNTSPVGKHKI--------TVCTNLPCLLSGGERAAHHLKHK 103


>gi|347754828|ref|YP_004862392.1| NADH dehydrogenase subunit E [Candidatus Chloracidobacterium
           thermophilum B]
 gi|347587346|gb|AEP11876.1| NADH dehydrogenase subunit E [Candidatus Chloracidobacterium
           thermophilum B]
          Length = 160

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 10/109 (9%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            TP+  ++A+AII+ YP   +R+A++PLL L Q    ++P   M ++A  L L    VYE
Sbjct: 8   LTPEFDRQADAIIARYP--QKRSAILPLLHLVQNACNYVPEDGMRFIAKKLGLNMNDVYE 65

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
             TFY+M   +PIG         YH+  C T  C+L  +  I E ++K+
Sbjct: 66  TLTFYSMLFTEPIG--------TYHIQLCRTISCYLCGAPQIREHLEKR 106


>gi|421746422|ref|ZP_16184217.1| NADH dehydrogenase subunit E [Cupriavidus necator HPC(L)]
 gi|409775035|gb|EKN56577.1| NADH dehydrogenase subunit E [Cupriavidus necator HPC(L)]
          Length = 166

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 8/103 (7%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
           K  +  I+ YP   +++AV+  L +AQ + GW+    M +VA +L++P + V EVATFY 
Sbjct: 8   KEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMEFVARYLDMPPVWVEEVATFYN 67

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           M+  KP+G        +Y L  CT  PC L   +   E +K+K
Sbjct: 68  MYDTKPVG--------RYKLAVCTNLPCALSGGERAGEYLKRK 102


>gi|145596572|ref|YP_001160869.1| NADH dehydrogenase subunit E [Salinispora tropica CNB-440]
 gi|145305909|gb|ABP56491.1| NADH-quinone oxidoreductase, E subunit [Salinispora tropica
           CNB-440]
          Length = 317

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 49/205 (23%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
           F+ + + RA  II+ YP    R+A++PLL L Q + G++  + + + A+ L L K +V  
Sbjct: 16  FSEETRARAREIIARYPADRSRSALLPLLHLVQSEEGYVSPAGIAFCAEVLGLNKAQVGA 75

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER---- 163
           VA+FYTM+ R+P G+        + ++ CT T C +     + + + +   +  E     
Sbjct: 76  VASFYTMYKRRPTGD--------WLVSVCTNTMCNVLGGQEVYDALVEHLGVGHEETTAD 127

Query: 164 ---------------------------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIG 196
                                       +++P+    ++D+L+AG +P            
Sbjct: 128 GTVTLEHAECLAACDYGPVMTVNYDFFDNVDPQTAVGVVDELRAGSRP----------TS 177

Query: 197 SQSGRFCQAREAYHDMTSLTGEPHG 221
           S+  R C+ +E    +     E  G
Sbjct: 178 SRGARLCRLKEMSVQLAGFADEREG 202


>gi|385850507|ref|YP_005897022.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M04-240196]
 gi|416181442|ref|ZP_11611636.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M13399]
 gi|416211696|ref|ZP_11621502.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M01-240013]
 gi|416211761|ref|ZP_11621515.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M01-240013]
 gi|433468479|ref|ZP_20425916.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           98080]
 gi|325135048|gb|EGC57676.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M13399]
 gi|325145238|gb|EGC67517.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M01-240013]
 gi|325145309|gb|EGC67587.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M01-240013]
 gi|325205330|gb|ADZ00783.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M04-240196]
 gi|432206565|gb|ELK62572.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           98080]
          Length = 157

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VA+++ +   + YE
Sbjct: 2   LSTESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVAEYIGISPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR      E +KKK
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGMDTGEYLKKK 102


>gi|91776409|ref|YP_546165.1| NADH-quinone oxidoreductase, E subunit [Methylobacillus flagellatus
           KT]
 gi|91710396|gb|ABE50324.1| NADH dehydrogenase subunit E [Methylobacillus flagellatus KT]
          Length = 159

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++  R +  ++ YP  H +AAV+  L +AQ + GWL    +  VAD+L +P +   E
Sbjct: 3   LSAESLARIDRELTKYPPEHRQAAVMSALRIAQTEKGWLSKETISEVADYLGIPAIAALE 62

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y +  CT   C LR+S  I+  ++K+
Sbjct: 63  VATFYNMYELEPVG--------KYKITVCTNISCMLRDSAEIVAHLQKR 103


>gi|320095552|ref|ZP_08027216.1| NADH-quinone oxidoreductase subunit E [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319977530|gb|EFW09209.1| NADH-quinone oxidoreductase subunit E [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 233

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 12/118 (10%)

Query: 46  FEFTPDNKKRAEA----IISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP 101
             +TPD + R  A    II+ YP GH R+A++P+L L Q   G++    +  ++  L+LP
Sbjct: 1   MSYTPDVEARLRADSAQIIARYPEGHSRSALLPMLHLVQSVDGYVSADGIDLISRILDLP 60

Query: 102 KMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           +  +  VATFYT + R P G+        Y +  CT   C +   D I E +  K  +
Sbjct: 61  RAEISAVATFYTQYKRHPTGD--------YLVGVCTNALCAVMGGDEIWERVSAKVGV 110


>gi|17546777|ref|NP_520179.1| NADH dehydrogenase subunit E [Ralstonia solanacearum GMI1000]
 gi|17429077|emb|CAD15765.1| probable nadh dehydrogenaseI(chain e) oxidoreductase protein
           [Ralstonia solanacearum GMI1000]
 gi|299066337|emb|CBJ37521.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum
           CMR15]
          Length = 167

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 8/103 (7%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
           K  +  ++ YP   +++AV+  L +AQ + GW+    M +VA++L +P + V EVATFY 
Sbjct: 8   KEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEEVATFYN 67

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           M+  KP+G        ++ L  CT  PC L   +   + +K+K
Sbjct: 68  MYDTKPVG--------RFKLTVCTNLPCALSGGERAADYLKQK 102


>gi|152980127|ref|YP_001353156.1| NADH dehydrogenase subunit E [Janthinobacterium sp. Marseille]
 gi|151280204|gb|ABR88614.1| NADH dehydrogenase I chain E [Janthinobacterium sp. Marseille]
          Length = 159

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 8/103 (7%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
           KR +  ++ +P   +++AV+  L +AQ +  WLP   M  VAD+L +P + V EVATFY 
Sbjct: 9   KRIDREVAKFPPDQKQSAVMAALQIAQDETRWLPPEVMQDVADYLGMPAIAVQEVATFYN 68

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           M+  KP+G        ++ ++ CT  PC L   +     +K+K
Sbjct: 69  MYNTKPVG--------KFKISVCTNLPCQLSGGEKAAHYLKQK 103


>gi|284034165|ref|YP_003384096.1| NADH-quinone oxidoreductase subunit E [Kribbella flavida DSM 17836]
 gi|283813458|gb|ADB35297.1| NADH-quinone oxidoreductase, E subunit [Kribbella flavida DSM
           17836]
          Length = 275

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 82/193 (42%), Gaps = 54/193 (27%)

Query: 63  YPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGE 122
           YPVG  R+A++P+L L Q   G +    +   AD L L    V  VATFYTM+ R+P+G+
Sbjct: 37  YPVG--RSALLPMLHLVQSVEGRVTPEGIEACADVLGLTGAEVSAVATFYTMYKRRPVGD 94

Query: 123 ERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK--------------------KCN---- 158
                   YH+  CT T C +   D I E +K+                    +CN    
Sbjct: 95  --------YHVGVCTNTLCAVMGGDLIFERLKQHLDVGNDETTEDGKITLEHIECNAACD 146

Query: 159 ----MMLERQ---DLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHD 211
               MM+  +   D+ P+   Q++DDL+ G +    P G T          C  REA   
Sbjct: 147 YAPVMMVNWEFFDDMTPESATQLVDDLRDGTE-VKSPRGAT---------ICTWREAER- 195

Query: 212 MTSLTGEPHGPWD 224
              L G P G  D
Sbjct: 196 --VLAGFPDGRAD 206


>gi|386841790|ref|YP_006246848.1| NADH dehydrogenase subunit E [Streptomyces hygroscopicus subsp.
           jinggangensis 5008]
 gi|374102091|gb|AEY90975.1| NADH dehydrogenase subunit E [Streptomyces hygroscopicus subsp.
           jinggangensis 5008]
 gi|451795083|gb|AGF65132.1| NADH dehydrogenase subunit E [Streptomyces hygroscopicus subsp.
           jinggangensis TL01]
          Length = 288

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 45/171 (26%)

Query: 51  DNKKRAEA----IISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106
           D + R EA    +I+ YP    R+A++PLL L Q + G +  + M + AD L L    V 
Sbjct: 25  DVRARLEADAREVIARYP--DSRSALLPLLHLVQSEEGHVTRTGMRFCADMLGLTTAEVT 82

Query: 107 EVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK----------- 155
            VATFYTM+ RKP G+        Y +  CT T C +   DAI E +++           
Sbjct: 83  AVATFYTMYRRKPSGD--------YQVGVCTNTLCAVMGGDAIFETLQEHLGVGNGETTD 134

Query: 156 ---------KCNMMLERQDL-----------EPKDMEQIIDDLKAGKKPAP 186
                    +CN   +   +            P   + ++DDL+AG+   P
Sbjct: 135 DGKVTLEHIECNAACDYAPVVMVNWEFFDNQTPASAKHLVDDLRAGRPVQP 185


>gi|298346122|ref|YP_003718809.1| NADH dehydrogenase [Mobiluncus curtisii ATCC 43063]
 gi|304390118|ref|ZP_07372072.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315657375|ref|ZP_07910257.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298236183|gb|ADI67315.1| NADH dehydrogenase (quinone) [Mobiluncus curtisii ATCC 43063]
 gi|304326600|gb|EFL93844.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315491847|gb|EFU81456.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 233

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 8/100 (8%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
           +  + IIS YP GH R+A++PLL L Q + G++  + +   ++ L +    V  VATFYT
Sbjct: 14  REGQEIISRYPEGHSRSALLPLLHLVQSEDGFVSANGIELCSELLGISPAEVSAVATFYT 73

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVI 153
            + R+P GE        Y++  CTT+ C +   D I E +
Sbjct: 74  QYKRRPNGE--------YNVGVCTTSLCAVMGGDEIWETV 105


>gi|379709446|ref|YP_005264651.1| NADH dehydrogenase subunit E [Nocardia cyriacigeorgica GUH-2]
 gi|374846945|emb|CCF64015.1| NADH dehydrogenase subunit E [Nocardia cyriacigeorgica GUH-2]
          Length = 239

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 10/104 (9%)

Query: 56  AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMF 115
           A  II+ YP  H R+A++PLL L Q + G++  + + + A+ L L    V  VATFY+M+
Sbjct: 27  AARIIARYP--HPRSALLPLLHLVQSEEGFVSGTGIEFCAEQLGLTAAEVTAVATFYSMY 84

Query: 116 IRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
            R P GE        YH+  CT T C +   DAIL  +++   +
Sbjct: 85  RRTPTGE--------YHVGVCTNTLCAVMGGDAILAALREHLGI 120


>gi|421562465|ref|ZP_16008292.1| NADH dehydrogenase I chain E [Neisseria meningitidis NM2795]
 gi|421907556|ref|ZP_16337431.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Neisseria
           meningitidis alpha704]
 gi|393291225|emb|CCI73425.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Neisseria
           meningitidis alpha704]
 gi|402343121|gb|EJU78276.1| NADH dehydrogenase I chain E [Neisseria meningitidis NM2795]
          Length = 157

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 8/100 (8%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           ++ YP    R+A++  L +AQ + GWL    + +VAD++ +   + YEVATFY M+  +P
Sbjct: 14  LAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYEVATFYNMYDLEP 73

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           +G        +Y L  CT  PC LR      E +K+K  +
Sbjct: 74  VG--------KYKLTVCTNLPCALRGGVDAGEYLKQKLGI 105


>gi|339325141|ref|YP_004684834.1| NADH-quinone oxidoreductase subunit E [Cupriavidus necator N-1]
 gi|338165298|gb|AEI76353.1| NADH-quinone oxidoreductase subunit E [Cupriavidus necator N-1]
          Length = 167

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 8/103 (7%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
           K  +  I+ YP   +++AV+  L +AQ + GW+    M +VA++L +P + V EVATFY 
Sbjct: 10  KEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMQFVANYLEMPPVWVEEVATFYN 69

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           M+  KP+G        ++ L  CT  PC L   +   E +K+K
Sbjct: 70  MYDTKPVG--------KFKLAVCTNLPCALSGGERAGEYLKRK 104


>gi|359797069|ref|ZP_09299657.1| NADH dehydrogenase subunit E [Achromobacter arsenitoxydans SY8]
 gi|359364967|gb|EHK66676.1| NADH dehydrogenase subunit E [Achromobacter arsenitoxydans SY8]
          Length = 164

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 8/97 (8%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           ++ +P    ++A++  L +AQ + GWL    +  VA+++ +P + V EVATFY MF  KP
Sbjct: 15  LAKFPGDQRQSAIMASLAIAQEEKGWLATEVIEDVANYIGVPPIAVQEVATFYNMFDVKP 74

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           +G+ +I          CT  PC LR+ D   E +K+K
Sbjct: 75  VGKNKIAV--------CTNLPCALRDGDRAGEYLKRK 103


>gi|383775457|ref|YP_005460023.1| putative NADH dehydrogenase I chain E [Actinoplanes missouriensis
           431]
 gi|381368689|dbj|BAL85507.1| putative NADH dehydrogenase I chain E [Actinoplanes missouriensis
           431]
          Length = 383

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 15/108 (13%)

Query: 41  NLDVKFEFTPDNKKRAE-------AIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHY 93
           + +   EF+P     AE        I++ YP G ER+A++PLL L Q + G++  + + +
Sbjct: 2   SAETTVEFSPAAAPLAEKLLEPALEILARYPAGRERSALLPLLHLVQTEEGYVSPTGVSF 61

Query: 94  VADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPC 141
            A+ L + K +V  VATFYTM+ R+P GE        Y ++ CT T C
Sbjct: 62  CAEILGINKAQVGAVATFYTMYKRRPTGE--------YLVSVCTNTLC 101


>gi|444918116|ref|ZP_21238195.1| NADH-ubiquinone oxidoreductase chain E [Cystobacter fuscus DSM
           2262]
 gi|444710230|gb|ELW51217.1| NADH-ubiquinone oxidoreductase chain E [Cystobacter fuscus DSM
           2262]
          Length = 162

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 12/116 (10%)

Query: 48  FTPDNKKRAEA----IISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
           FTP+ +K+ +     I+S YP   + AA++P L L Q   GWLP   +  VA  L +   
Sbjct: 6   FTPEEQKKFDTEIAEILSHYPADRKSAAMLPALRLMQDIKGWLPPEGIKLVAQVLGVTPE 65

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
           R YEVA+FY M+  K  G        +Y ++ CT  PC LR ++ +L  ++ K  +
Sbjct: 66  RAYEVASFYVMYHLKKPG--------KYVIDVCTNLPCALRGAEKMLAHLENKLGL 113


>gi|385854421|ref|YP_005900934.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M01-240355]
 gi|325203362|gb|ADY98815.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M01-240355]
          Length = 157

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            + ++ K+ +  ++ YP    R+A++  L +AQ + GWL    + +VAD++ +   + YE
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           VATFY M+  +P+G        +Y L  CT  PC LR      + +K+K
Sbjct: 62  VATFYNMYDLEPVG--------KYKLTVCTNLPCALRGGVNAADYLKQK 102


>gi|443625240|ref|ZP_21109688.1| putative NADH dehydrogenase subunit E [Streptomyces
           viridochromogenes Tue57]
 gi|443341157|gb|ELS55351.1| putative NADH dehydrogenase subunit E [Streptomyces
           viridochromogenes Tue57]
          Length = 290

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 41/165 (24%)

Query: 53  KKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFY 112
           ++ A  +I+ YP    R+A++PLL L Q + G +  + M + AD L L    V  VATFY
Sbjct: 31  ERDAREVIARYP--DSRSALLPLLHLVQSEEGHVTRTGMQFCADVLGLTTAEVTAVATFY 88

Query: 113 TMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK----------------- 155
           TM+ RKP G+        Y +  CT T C +   DAI E +++                 
Sbjct: 89  TMYRRKPSGD--------YQVGVCTNTLCAVMGGDAIFEELQEHLGVGNGETTDDGKVTL 140

Query: 156 ---KCNMMLERQDL-----------EPKDMEQIIDDLKAGKKPAP 186
              +CN   +   +            P   ++++DDL+AG+   P
Sbjct: 141 EHIECNAACDFAPVVMVNWEFFDNQTPASAKRLVDDLRAGRDVEP 185


>gi|271962159|ref|YP_003336355.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270505334|gb|ACZ83612.1| NADH:ubiquinone oxidoreductase 24 kD subunit- like protein
           [Streptosporangium roseum DSM 43021]
          Length = 219

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 61/211 (28%)

Query: 48  FTPDNKKR----AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
           +TP+ ++R    A+ II  YP    R+A++PLL L Q + G++      + A+ L L K 
Sbjct: 3   YTPEVRERLEQDAKEIIGRYP--KTRSALLPLLHLVQSEDGYVSDDGQEFCAEMLGLSKA 60

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK-------- 155
            V  V+TFYTM+ RKP+G+        YH+  C  T C +   D I + + +        
Sbjct: 61  EVVGVSTFYTMYKRKPMGD--------YHVGVCINTLCAVMGGDQIWDELSEHAGVGHDE 112

Query: 156 ------------KCN--------MMLERQDLE---PKDMEQIIDDLKAGKKPAP--GPSG 190
                       +CN        MM+  +  +   P   +Q++DDL+ GK+ +P  GP  
Sbjct: 113 TTPDGKVSLERLECNAACDFAPVMMVNWEFFDNQTPASAKQLVDDLRDGKEISPTRGPK- 171

Query: 191 YTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
                     + C  +EA      L+G P G
Sbjct: 172 ----------KLCTFKEASR---VLSGLPDG 189


>gi|319761766|ref|YP_004125703.1| NADH-quinone oxidoreductase, e subunit [Alicycliphilus
           denitrificans BC]
 gi|330826546|ref|YP_004389849.1| NADH-quinone oxidoreductase subunit E [Alicycliphilus denitrificans
           K601]
 gi|317116327|gb|ADU98815.1| NADH-quinone oxidoreductase, E subunit [Alicycliphilus
           denitrificans BC]
 gi|329311918|gb|AEB86333.1| NADH-quinone oxidoreductase, E subunit [Alicycliphilus
           denitrificans K601]
          Length = 163

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
            T   K+R    ++ YP   +++AV+  L + Q++ GW+   +   +A++L +P++ V+E
Sbjct: 2   ITEATKERFAREVAKYPPEQKQSAVMACLSIVQQEQGWISQESEAAIAEYLGMPQIAVHE 61

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           V TFY M+ ++P+G        +Y L  CT  PC LR  +  L  ++ K
Sbjct: 62  VTTFYNMYNQQPVG--------KYKLAVCTNLPCQLRGGNQALHHLEAK 102


>gi|315605126|ref|ZP_07880177.1| NADH-quinone oxidoreductase subunit E [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315313162|gb|EFU61228.1| NADH-quinone oxidoreductase subunit E [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 235

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 12/116 (10%)

Query: 48  FTPDNKKRAEA----IISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
           +TPD   R +A    II+ YP GH R+A++P+L L Q   G++    + +++  L LP+ 
Sbjct: 3   YTPDTLARLQADAAQIIARYPQGHARSALLPMLHLIQSVDGYVSPDGIDFISATLELPRA 62

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
            +  VATFYT + R P G+        Y +  CT   C +   D I E +  K  +
Sbjct: 63  EISAVATFYTQYKRHPTGD--------YLVGVCTNALCAVMGGDEIWEKVSDKVGV 110


>gi|410451196|ref|ZP_11305214.1| NADH-quinone oxidoreductase, E subunit [Leptospira sp. Fiocruz
           LV3954]
 gi|410014973|gb|EKO77087.1| NADH-quinone oxidoreductase, E subunit [Leptospira sp. Fiocruz
           LV3954]
          Length = 159

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 67/108 (62%), Gaps = 12/108 (11%)

Query: 44  VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP-- 101
           + ++F+  ++KR + ++ ++P   +R+ ++P L + QR++G++  + M Y+A  L  P  
Sbjct: 1   MSYKFSEASEKRFQKMLEVFP--EKRSLILPCLYILQRENGFVDQAGMDYIATRLGDPIS 58

Query: 102 KMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
             +VY VATFYT++ +KP+G        +YH+  C T+ C+L+ +D I
Sbjct: 59  LAQVYGVATFYTLYNKKPVG--------KYHIQICGTSSCYLQGNDRI 98


>gi|351731272|ref|ZP_08948963.1| NADH-quinone oxidoreductase, E subunit [Acidovorax radicis N35]
          Length = 169

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 8/97 (8%)

Query: 60  ISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119
           ++ YP    ++AV+  L + Q++ GW+ + +   +A++L + ++ V+EV TFY M+ ++P
Sbjct: 20  VAKYPPEQAQSAVMACLSIVQQEQGWVSVESEAVIAEYLGMAQIAVHEVTTFYNMYNQQP 79

Query: 120 IGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
            G        +Y LN CT  PC LR+    L  ++KK
Sbjct: 80  TG--------KYKLNVCTNLPCQLRDGQKALHHLEKK 108


>gi|113867074|ref|YP_725563.1| NADH dehydrogenase subunit E [Ralstonia eutropha H16]
 gi|113525850|emb|CAJ92195.1| NADH dehydrogenase chain E [Ralstonia eutropha H16]
          Length = 167

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 8/103 (7%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
           K  +  I+ YP   +++AV+  L +AQ + GW+    M +VA +L +P + V EVATFY 
Sbjct: 10  KEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMQFVASYLEMPPVWVEEVATFYN 69

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           M+  KP+G        ++ L  CT  PC L   +   E +K+K
Sbjct: 70  MYDTKPVG--------KFKLAVCTNLPCALSGGERAGEYLKRK 104


>gi|391229899|ref|ZP_10266105.1| NADH-quinone oxidoreductase, E subunit [Opitutaceae bacterium TAV1]
 gi|391219560|gb|EIP97980.1| NADH-quinone oxidoreductase, E subunit [Opitutaceae bacterium TAV1]
          Length = 163

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 10/114 (8%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
             P+  +R + +I+ YPV   R+A +PLL L Q   G++   A+ +VAD L + ++ V E
Sbjct: 3   LKPETLQRIDEVITHYPV--RRSATLPLLHLIQEDAGYISDEALEWVADKLGIERIHVLE 60

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMML 161
           V TFY MF RKPIG        + H+  C T  C L     + E ++K+ +  L
Sbjct: 61  VVTFYPMFRRKPIG--------RRHIKVCRTLSCALMGGYKVCETMQKEFDTHL 106


>gi|407691072|ref|YP_006814656.1| NADH-quinone oxidoreductase subunit E 2 [Sinorhizobium meliloti
           Rm41]
 gi|433616070|ref|YP_007192865.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti GR4]
 gi|5650748|emb|CAB51633.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium
           meliloti]
 gi|407322247|emb|CCM70849.1| NADH-quinone oxidoreductase subunit E 2 [Sinorhizobium meliloti
           Rm41]
 gi|429554317|gb|AGA09266.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti GR4]
          Length = 168

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 10/103 (9%)

Query: 53  KKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFY 112
           ++  EA  + YP    R+A++P L +AQ++HG LP   +  VA  L + ++ VYE+ATFY
Sbjct: 4   REEIEAAAARYP--DRRSAIMPALMIAQKEHGHLPGPVLEEVAQILGVERVWVYELATFY 61

Query: 113 TMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
           T+F  +PIG        ++HL  C    C L  S+A+L  ++K
Sbjct: 62  TLFHTEPIG--------RFHLQLCDNVSCMLCGSEALLTHLEK 96


>gi|398836855|ref|ZP_10594181.1| NADH-quinone oxidoreductase, E subunit [Herbaspirillum sp. YR522]
 gi|398210642|gb|EJM97284.1| NADH-quinone oxidoreductase, E subunit [Herbaspirillum sp. YR522]
          Length = 163

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 8/103 (7%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
           K+ +  ++ YP    ++AV+  L +AQ +HGWLP      +AD++ +P + V EVATFY 
Sbjct: 13  KKIDRELAKYPGDQRQSAVMSALRIAQVEHGWLPAELQQEIADYIGMPAVAVQEVATFYN 72

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           MF   P+G+ +I          CT  PC L   +     +K K
Sbjct: 73  MFNTSPVGKHKITV--------CTNLPCLLSGGERAAHHLKHK 107


>gi|422011470|ref|ZP_16358287.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Actinomyces
           georgiae F0490]
 gi|394765216|gb|EJF46767.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Actinomyces
           georgiae F0490]
          Length = 233

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 45/181 (24%)

Query: 46  FEFTPDNKKRAEA----IISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP 101
             +TPD + R  A    II+ YP GH R+A++P+L L Q   G++    +  ++  L+LP
Sbjct: 1   MSYTPDVEARLRADSAQIIARYPEGHSRSALLPMLHLVQSVDGYVSADGIDLISRILDLP 60

Query: 102 KMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN--- 158
           +  +  VATFYT + R P G+        Y +  CT   C +   D I E +  K     
Sbjct: 61  RAEISAVATFYTQYKRHPTGD--------YLVGVCTNALCAVMGGDEIWERVCAKVGVGS 112

Query: 159 --------MMLER--------------------QDLEPKDMEQIIDDLKAGKK--PAPGP 188
                   + LER                     +  P+    IIDD++AG+   P  GP
Sbjct: 113 DETSESGRITLERIECNAACDYAPVVMVNWEFFDNQTPESALAIIDDIEAGRDIHPTRGP 172

Query: 189 S 189
           +
Sbjct: 173 A 173


>gi|227822749|ref|YP_002826721.1| NADH dehydrogenase I subunit E1 [Sinorhizobium fredii NGR234]
 gi|227341750|gb|ACP25968.1| NADH dehydrogenase I chain E1 [Sinorhizobium fredii NGR234]
          Length = 170

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 10/99 (10%)

Query: 53  KKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFY 112
           +++ E   + YP   +R+A++P L +AQ++HG LP   +  VAD L + ++ VYE+ATFY
Sbjct: 4   REKIEEAAARYP--DQRSAIMPALLIAQQEHGHLPGPVLEEVADILGVERIWVYELATFY 61

Query: 113 TMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILE 151
           T+F  +P+G         +HL  C    C L  S+A+L+
Sbjct: 62  TLFHTEPVG--------MFHLQLCDNVSCMLCGSEALLK 92


>gi|73540668|ref|YP_295188.1| NADH dehydrogenase subunit E [Ralstonia eutropha JMP134]
 gi|72118081|gb|AAZ60344.1| NADH dehydrogenase subunit E [Ralstonia eutropha JMP134]
          Length = 168

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 8/103 (7%)

Query: 54  KRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYT 113
           K  +  I+ YP   +++AV+  L +AQ + GW+    M +VA +L++P + V EVATFY 
Sbjct: 10  KEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMQFVASYLDMPPVWVEEVATFYN 69

Query: 114 MFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
           M+  KP+G        ++ L  CT  PC L   +   E +K+K
Sbjct: 70  MYDTKPVG--------RFKLAVCTNLPCALSGGERAGEYLKRK 104


>gi|433646351|ref|YP_007291353.1| NADH dehydrogenase subunit E [Mycobacterium smegmatis JS623]
 gi|433296128|gb|AGB21948.1| NADH dehydrogenase subunit E [Mycobacterium smegmatis JS623]
          Length = 289

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 82/194 (42%), Gaps = 46/194 (23%)

Query: 24  QRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQH 83
           QR +     +H   K  + DV+     D    AE +I+ YP G  R+A++PLL L Q + 
Sbjct: 9   QRPDEPGPPIH-GAKTYSADVEARLAAD----AEKVIAKYPQG--RSALLPLLHLVQSED 61

Query: 84  GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL 143
           G L  + + + A  L L    V  VATFY+M+ R P GE        Y +  CT T C +
Sbjct: 62  GCLTSAGIAFCAAQLGLTDAEVTAVATFYSMYRRTPTGE--------YLVGVCTNTLCAI 113

Query: 144 RNSDAILEVIKK--------------------KCNMMLERQDL-----------EPKDME 172
              DAILE ++                     +CN   +   +            P    
Sbjct: 114 MGGDAILEALQDHLGIHAGETTDDGRVTLEHVECNAACDYAPVVMVNWEFFDNQTPSSAR 173

Query: 173 QIIDDLKAGKKPAP 186
            ++D+L+AG+ P P
Sbjct: 174 GLVDELRAGQPPTP 187


>gi|384086274|ref|ZP_09997449.1| NADH-quinone oxidoreductase subunit E [Acidithiobacillus
           thiooxidans ATCC 19377]
          Length = 163

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 8/101 (7%)

Query: 61  SIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPI 120
           S YP    R+A++  L +AQ + G+L    + YVA+ L LP ++ +EVATFYTM+  KP+
Sbjct: 15  SKYPQEESRSALLAALRIAQEEQGYLRDELIEYVAEILGLPAIQAFEVATFYTMYDLKPV 74

Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMML 161
           G        ++ L  C +  C+L  SD I+  + K   + L
Sbjct: 75  G--------RHKLCVCGSVSCFLNGSDRIIAHLSKTLGIGL 107


>gi|99034475|ref|ZP_01314468.1| hypothetical protein Wendoof_01000731 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 114

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 8/66 (12%)

Query: 91  MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
           M YVAD L++P +RVYEVA FYTM+  KP+G        +Y +  C TTPCWL NS+ +L
Sbjct: 1   MRYVADMLHIPHIRVYEVANFYTMYNLKPVG--------KYLIQICRTTPCWLCNSEEVL 52

Query: 151 EVIKKK 156
              KKK
Sbjct: 53  NTFKKK 58


>gi|302536172|ref|ZP_07288514.1| NADH dehydrogenase subunit E [Streptomyces sp. C]
 gi|302445067|gb|EFL16883.1| NADH dehydrogenase subunit E [Streptomyces sp. C]
          Length = 245

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 14/113 (12%)

Query: 47  EFTPDNKKRAEA----IISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPK 102
           +F  D ++R EA    II  YP    R+A++PLL L Q + G++  + + + A+ L L  
Sbjct: 15  DFPADVRERLEADAKEIIGRYP--DSRSALLPLLHLTQSEEGFVSRTGIRFCAEVLGLTT 72

Query: 103 MRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
             V  VATFYTM+ RKP G+        Y +  CT T C +   DAI + +K+
Sbjct: 73  AEVTAVATFYTMYRRKPSGD--------YQVGVCTNTLCAVMGGDAIFDELKQ 117


>gi|421111522|ref|ZP_15571998.1| NADH-quinone oxidoreductase, E subunit [Leptospira santarosai str.
           JET]
 gi|410803132|gb|EKS09274.1| NADH-quinone oxidoreductase, E subunit [Leptospira santarosai str.
           JET]
          Length = 159

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 65/106 (61%), Gaps = 12/106 (11%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP--KM 103
           + F+  ++KR + ++ ++P   +R+ ++P L + QR++G++  + M Y+A  L  P    
Sbjct: 3   YRFSEASEKRFQKMLEVFP--EKRSLILPCLYILQRENGFVDQAGMDYIATRLGDPISLA 60

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
           +VY VATFYT++ +KP+G        +YH+  C T+ C+L+ +D I
Sbjct: 61  QVYGVATFYTLYNKKPVG--------KYHIQICGTSSCYLQGNDRI 98


>gi|183220690|ref|YP_001838686.1| NADH-quinone oxidoreductase subunit E [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|167779112|gb|ABZ97410.1| NADH-quinone oxidoreductase, chain E [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 164

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 15/145 (10%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPK--M 103
           ++F+ +++ R + +I  +P   +R+ ++P L L Q   G++    M Y+AD +  P    
Sbjct: 5   YQFSQESETRFQRLIPQFP--SKRSLILPCLFLLQADKGFVDTEGMQYIADRIGEPVSLA 62

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER 163
            V+ VATFYTM+ +KP+G        ++H+  C    C+L  SD+I E +  K  M   +
Sbjct: 63  HVHGVATFYTMYNKKPVG--------KFHIQICANISCYLAGSDSITEHVCSKLGM---K 111

Query: 164 QDLEPKDMEQIIDDLKAGKKPAPGP 188
           +    KD +  +D+++       GP
Sbjct: 112 KGETTKDKKYTVDEVQCLGACGFGP 136


>gi|189910791|ref|YP_001962346.1| NADH dehydrogenase subunit E [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775467|gb|ABZ93768.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
          Length = 162

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 15/145 (10%)

Query: 46  FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPK--M 103
           ++F+ +++ R + +I  +P   +R+ ++P L L Q   G++    M Y+AD +  P    
Sbjct: 3   YQFSQESETRFQRLIPQFP--SKRSLILPCLFLLQADKGFVDTEGMQYIADRIGEPVSLA 60

Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER 163
            V+ VATFYTM+ +KP+G        ++H+  C    C+L  SD+I E +  K  M   +
Sbjct: 61  HVHGVATFYTMYNKKPVG--------KFHIQICANISCYLAGSDSITEHVCSKLGM---K 109

Query: 164 QDLEPKDMEQIIDDLKAGKKPAPGP 188
           +    KD +  +D+++       GP
Sbjct: 110 KGETTKDKKYTVDEVQCLGACGFGP 134


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.135    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,676,289,981
Number of Sequences: 23463169
Number of extensions: 149666336
Number of successful extensions: 387286
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2532
Number of HSP's successfully gapped in prelim test: 220
Number of HSP's that attempted gapping in prelim test: 382109
Number of HSP's gapped (non-prelim): 3406
length of query: 240
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 102
effective length of database: 9,121,278,045
effective search space: 930370360590
effective search space used: 930370360590
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)