BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8528
(240 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0MQI9|NDUV2_PANTR NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
OS=Pan troglodytes GN=NDUFV2 PE=2 SV=1
Length = 249
Score = 206 bits (523), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 147/241 (60%), Gaps = 52/241 (21%)
Query: 15 QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
++VR+L T + N ALFVHRDT ++N D F+FTP+N KR EAI+ YP GH+ AAV
Sbjct: 20 RHVRNLHKTAKQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79
Query: 73 IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
+P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G +YH
Sbjct: 80 LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 131
Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
+ CTTTPC LRNSD+ILE I+KK + +
Sbjct: 132 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191
Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
+DL KD+E+IID+LKAGK P PGP +SGRF + E +TSLT P G
Sbjct: 192 YYEDLTAKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240
Query: 222 P 222
P
Sbjct: 241 P 241
>sp|P04394|NDUV2_BOVIN NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
OS=Bos taurus GN=NDUFV2 PE=1 SV=3
Length = 249
Score = 205 bits (522), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/241 (47%), Positives = 147/241 (60%), Gaps = 52/241 (21%)
Query: 15 QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
+++R+L T N ALFVHRDT ++N + F+FTP+N KR EAI+ YP GH+ AAV
Sbjct: 20 KHIRNLHKTAVQNGAGGALFVHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAV 79
Query: 73 IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
+P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G +YH
Sbjct: 80 LPVLDLAQRQNGWLPISAMNKVAEILQVPPMRVYEVATFYTMYNRKPVG--------KYH 131
Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
+ CTTTPC LRNSD+ILE I+KK + +
Sbjct: 132 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191
Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
+DL PKD+E+IID+LKAGK P PGP +SGRF + E +TSLT P G
Sbjct: 192 YYEDLTPKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240
Query: 222 P 222
P
Sbjct: 241 P 241
>sp|Q9D6J6|NDUV2_MOUSE NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
OS=Mus musculus GN=Ndufv2 PE=1 SV=2
Length = 248
Score = 205 bits (521), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/224 (49%), Positives = 139/224 (62%), Gaps = 50/224 (22%)
Query: 30 ALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPIS 89
ALFVHRDT ++N D F+FTP+N KR EAI+ YP GH+ AAV+P+LDLAQRQ+GWLPIS
Sbjct: 36 ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPIS 95
Query: 90 AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
AM+ VA+ L +P MRVYEVATFYTM+ RKP+G +YH+ CTTTPC LR+SD+I
Sbjct: 96 AMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYHIQVCTTTPCMLRDSDSI 147
Query: 150 LEVIKKKCNMMLER-------------------------------QDLEPKDMEQIIDDL 178
LE +++K + + +DL PKD+E+IID+L
Sbjct: 148 LETLQRKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDEL 207
Query: 179 KAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
KAGK P PGP +SGRFC E +TSLT P GP
Sbjct: 208 KAGKVPKPGP---------RSGRFCC--EPAGGLTSLTEPPKGP 240
>sp|Q0MQI7|NDUV2_PONPY NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
OS=Pongo pygmaeus GN=NDUFV2 PE=2 SV=1
Length = 249
Score = 204 bits (520), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 146/241 (60%), Gaps = 52/241 (21%)
Query: 15 QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
++VR+L T N ALFVHRDT ++N D F+FTP+N KR EAI+ YP GH+ AAV
Sbjct: 20 RHVRNLHKTAMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79
Query: 73 IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
+P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G +YH
Sbjct: 80 LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 131
Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
+ CTTTPC LRNSD+ILE I+KK + +
Sbjct: 132 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191
Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
+DL KD+E+IID+LKAGK P PGP +SGRF + E +TSLT P G
Sbjct: 192 YYEDLTAKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240
Query: 222 P 222
P
Sbjct: 241 P 241
>sp|Q0MQI8|NDUV2_GORGO NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
OS=Gorilla gorilla gorilla GN=NDUFV2 PE=2 SV=1
Length = 249
Score = 204 bits (520), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 146/241 (60%), Gaps = 52/241 (21%)
Query: 15 QNVRSLSTTQRLNH--DALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
++VR+L T N ALFVHRDT ++N D F+FTP+N KR EAI+ YP GH+ AAV
Sbjct: 20 RHVRNLHKTAMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79
Query: 73 IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
+P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G +YH
Sbjct: 80 LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 131
Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
+ CTTTPC LRNSD+ILE I+KK + +
Sbjct: 132 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191
Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
+DL KD+E+IID+LKAGK P PGP +SGRF + E +TSLT P G
Sbjct: 192 YYEDLTAKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240
Query: 222 P 222
P
Sbjct: 241 P 241
>sp|Q20719|NDUV2_CAEEL Probable NADH dehydrogenase [ubiquinone] flavoprotein 2,
mitochondrial OS=Caenorhabditis elegans GN=F53F4.10 PE=1
SV=1
Length = 239
Score = 204 bits (518), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 147/247 (59%), Gaps = 51/247 (20%)
Query: 8 LASNVVRQNVR-SLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVG 66
LASNV+ Q R +R L VHRDTK++NL+VKF+FT +N++R +AI+ IYP G
Sbjct: 3 LASNVLLQASRLGEMVIKRGGATGLMVHRDTKENNLNVKFKFTSENQERIKAIMDIYPEG 62
Query: 67 HERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIK 126
H+ A+IPLLDLAQRQHGWLPISAMH VA L +P+MR YEVATFYTMF R+P+G
Sbjct: 63 HKAGALIPLLDLAQRQHGWLPISAMHEVAKILEVPRMRAYEVATFYTMFNRQPVG----- 117
Query: 127 SILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM--------------------------M 160
+Y L C TTPC LR ++ I E I+KK + M
Sbjct: 118 ---KYFLQVCATTPCMLRGAETITETIEKKLGIHAGETTKDGLFTLAEVECLGACVNAPM 174
Query: 161 LE-----RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSL 215
++ +DL PKD+ +I+DDLKAG+KPA GP +SGR A E + ++TSL
Sbjct: 175 IQINDDYFEDLTPKDVNEILDDLKAGRKPAAGP---------RSGRL--AAEPFGELTSL 223
Query: 216 TGEPHGP 222
P GP
Sbjct: 224 KETPPGP 230
>sp|P19404|NDUV2_HUMAN NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
OS=Homo sapiens GN=NDUFV2 PE=1 SV=2
Length = 249
Score = 204 bits (518), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 146/241 (60%), Gaps = 52/241 (21%)
Query: 15 QNVRSLSTT--QRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAV 72
++VR+L T Q ALFVHRDT ++N D F+FTP+N KR EAI+ YP GH+ AAV
Sbjct: 20 RHVRNLHKTVMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAV 79
Query: 73 IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYH 132
+P+LDLAQRQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G +YH
Sbjct: 80 LPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYH 131
Query: 133 LNWCTTTPCWLRNSDAILEVIKKKCNMMLER----------------------------- 163
+ CTTTPC LRNSD+ILE I+KK + +
Sbjct: 132 IQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDN 191
Query: 164 --QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHG 221
+DL KD+E+IID+LKAGK P PGP +SGRF + E +TSLT P G
Sbjct: 192 YYEDLTAKDIEEIIDELKAGKIPKPGP---------RSGRF--SCEPAGGLTSLTEPPKG 240
Query: 222 P 222
P
Sbjct: 241 P 241
>sp|P19234|NDUV2_RAT NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
OS=Rattus norvegicus GN=Ndufv2 PE=1 SV=2
Length = 248
Score = 202 bits (513), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/233 (46%), Positives = 140/233 (60%), Gaps = 50/233 (21%)
Query: 21 STTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQ 80
+ Q ALFVHRDT ++N D F+FTP+N +R EAI+ YP GH AAV+P+LDLAQ
Sbjct: 27 TAVQNGAGGALFVHRDTPENNPDTPFDFTPENYERIEAIVRNYPEGHRAAAVLPVLDLAQ 86
Query: 81 RQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTP 140
RQ+GWLPISAM+ VA+ L +P MRVYEVATFYTM+ RKP+G +YH+ CTTTP
Sbjct: 87 RQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVG--------KYHIQVCTTTP 138
Query: 141 CWLRNSDAILEVIKKKCNMMLER-------------------------------QDLEPK 169
C LR+SD+ILE +++K + + +DL PK
Sbjct: 139 CMLRDSDSILETLQRKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDDYYEDLTPK 198
Query: 170 DMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTGEPHGP 222
D+E+IID+L+AGK P PGP +SGRFC E +TSLT P GP
Sbjct: 199 DIEEIIDELRAGKVPKPGP---------RSGRFCC--EPAGGLTSLTEPPKGP 240
>sp|P40915|NDUV2_NEUCR NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-24 PE=2 SV=1
Length = 263
Score = 157 bits (397), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 138/265 (52%), Gaps = 57/265 (21%)
Query: 3 SNLAKLASNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISI 62
+ L+ S + + LS + R D L VHR+T D+N D+ F+F+ DN+K E II
Sbjct: 18 TRLSTKPSTIAPVSRACLSISARRPSDTLMVHRNTPDNNPDIPFKFSADNEKVIEEIIKR 77
Query: 63 YPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGE 122
YP +++AAV+PLLDL QRQHG+ IS M+ VA L +P MRVYEVA+FYTM+ R P+G
Sbjct: 78 YPPQYKKAAVMPLLDLGQRQHGFCSISVMNEVARLLEMPPMRVYEVASFYTMYNRTPVG- 136
Query: 123 ERIKSILQYHLNWCTTTPCWLR--NSDAILEVIKKKCNM--------------------- 159
++H+ CTTTPC L SD I++ IK+ +
Sbjct: 137 -------KFHVQACTTTPCQLGGCGSDVIVKAIKEHLGIKQGETTPDGLFTFIEVECLGA 189
Query: 160 -----MLE-----RQDLEPKDMEQIIDDLK-----AGKKPAPGPSGYTSGIGSQSGRFCQ 204
M++ +DL P+ ++Q++ LK K P PGP QSGR Q
Sbjct: 190 CANAPMVQINDDYFEDLTPETIKQVLSALKESVTDVSKAPQPGP---------QSGR--Q 238
Query: 205 AREAYHDMTSLTGEPHGPWDSKRDF 229
E +TSLT EP+GP ++ D
Sbjct: 239 TCENAAGLTSLTSEPYGPEVTRSDL 263
>sp|Q9ZDH5|NUOE_RICPR NADH-quinone oxidoreductase subunit E OS=Rickettsia prowazekii
(strain Madrid E) GN=nuoE PE=3 SV=1
Length = 177
Score = 124 bits (310), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 77/115 (66%), Gaps = 9/115 (7%)
Query: 43 DVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLP 101
+ F F N AE II YP +R+A++PLLDLAQRQ+G WL +SA+ YVA+ L +P
Sbjct: 7 NFTFAFDKKNLNLAETIIKKYPPEGKRSAILPLLDLAQRQNGGWLHVSAIEYVANMLEMP 66
Query: 102 KMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
MR YEVATFYTMF PIG +YH+ CTTTPCWLR SD I+++ +KK
Sbjct: 67 YMRAYEVATFYTMFNLNPIG--------KYHIQVCTTTPCWLRGSDNIMKICEKK 113
>sp|Q68X20|NUOE_RICTY NADH-quinone oxidoreductase subunit E OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=nuoE PE=3 SV=1
Length = 170
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/122 (51%), Positives = 80/122 (65%), Gaps = 11/122 (9%)
Query: 36 DTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYV 94
+TK N F F N AE II YP +R+A++PLLDLAQRQ+G WL ISA+ YV
Sbjct: 2 NTKTTNF--TFAFDKKNLNLAETIIKKYPPNGKRSAILPLLDLAQRQNGGWLHISAIEYV 59
Query: 95 ADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIK 154
A+ L +P MR YEVATFY+MF P+G +YH+ CTTTPCWLR SD I+++ +
Sbjct: 60 ANMLEMPYMRAYEVATFYSMFNLSPVG--------KYHIQVCTTTPCWLRGSDDIMKICE 111
Query: 155 KK 156
KK
Sbjct: 112 KK 113
>sp|Q1RJJ1|NUOE_RICBR NADH-quinone oxidoreductase subunit E OS=Rickettsia bellii (strain
RML369-C) GN=nuoE PE=3 SV=1
Length = 167
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 89/166 (53%), Gaps = 40/166 (24%)
Query: 46 FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
F F N AE II YP +R+A++PLLDLAQRQ+G WLP+ A+ YVA+ L +P MR
Sbjct: 8 FSFDKKNLSLAEDIIKKYPPEGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPYMR 67
Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER- 163
YEVATFYTMF KP+G+ H+ CTTTPCWLR SD I++ K+K + E
Sbjct: 68 AYEVATFYTMFNLKPVGKN--------HIQVCTTTPCWLRGSDDIMKTCKEKLGIKDEEV 119
Query: 164 ------------------------------QDLEPKDMEQIIDDLK 179
+DL P+ ME IID L+
Sbjct: 120 TKDQKFSLIEIECLGACVNAPVVQINDDYYEDLTPEKMEAIIDKLR 165
>sp|Q92ID9|NUOE_RICCN NADH-quinone oxidoreductase subunit E OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=nuoE PE=3 SV=1
Length = 167
Score = 120 bits (302), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/119 (50%), Positives = 79/119 (66%), Gaps = 9/119 (7%)
Query: 46 FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNLPKMR 104
F F N AE II YP +R+A++PLLDLAQRQ+G WLP+ A+ YVA+ L +P +R
Sbjct: 8 FTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPYIR 67
Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLER 163
YEVATFYTMF K +G +YH+ CTTTPCWLR SD I+++ +KK + L+
Sbjct: 68 AYEVATFYTMFNLKRVG--------KYHIQVCTTTPCWLRGSDDIMKICEKKLGVKLKE 118
>sp|Q4UM09|NUOE_RICFE NADH-quinone oxidoreductase subunit E OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=nuoE PE=3 SV=1
Length = 167
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 79/123 (64%), Gaps = 9/123 (7%)
Query: 42 LDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADFLNL 100
+ F F N AE II YP +R+A++PLLDLAQRQ+G WLP+ A+ YVA+ L +
Sbjct: 1 MSTNFTFDKKNLNLAEDIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEM 60
Query: 101 PKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMM 160
P MR YEVATFY+MF K +G +YH+ CTTTPCWL SD I+++ +KK +
Sbjct: 61 PYMRAYEVATFYSMFNLKRVG--------KYHIQVCTTTPCWLHGSDDIMKICEKKLGIK 112
Query: 161 LER 163
L+
Sbjct: 113 LKE 115
>sp|O22769|NDUV2_ARATH NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
OS=Arabidopsis thaliana GN=At4g02580 PE=1 SV=3
Length = 255
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 92/151 (60%), Gaps = 10/151 (6%)
Query: 1 MLSNLAKLASNVVRQNVRS-LSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAI 59
ML+ LA +RQ R S R AL H D+ D+ D+ +EF+ N+ + + I
Sbjct: 1 MLARLAAKRLLEIRQVFRQPTSQVTRSLSTALNYHLDSPDNKPDLPWEFSEANQSKVKEI 60
Query: 60 ISIYPVGHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118
+S YP ++++AVIPLLDLAQ+Q+ GWLP+SAM+ VA + + +RVYEVATFY+MF R
Sbjct: 61 LSYYPSNYKQSAVIPLLDLAQQQNGGWLPVSAMNAVAKVIEVAPIRVYEVATFYSMFNRA 120
Query: 119 PIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
+G +YHL C TTPC +R S I
Sbjct: 121 KVG--------KYHLLVCGTTPCMIRGSRDI 143
>sp|Q54F10|NDUV2_DICDI NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
OS=Dictyostelium discoideum GN=ndufv2 PE=3 SV=1
Length = 247
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 85/146 (58%), Gaps = 11/146 (7%)
Query: 10 SNVVRQNVRSLSTTQRLNHDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHER 69
SN +N ST R DAL H +T+D+N F+FT +N + E I++ YP + +
Sbjct: 18 SNGFNRNYFKQSTLTR--SDALSRHVETEDNNEHTPFDFTQENLVKVEKILAKYPKQYRQ 75
Query: 70 AAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSI 128
+A+IPLLDLAQRQ+ GW+ + AM VA + M YEVA+FYTMF R IGE ++
Sbjct: 76 SALIPLLDLAQRQNGGWISLRAMDKVAHICGIAPMTAYEVASFYTMFNRTKIGENFVQ-- 133
Query: 129 LQYHLNWCTTTPCWLRNSDAILEVIK 154
CTTTPC LR S I++ K
Sbjct: 134 ------VCTTTPCMLRGSGEIIKTCK 153
>sp|P56909|NUOE1_RHIME NADH-quinone oxidoreductase subunit E 1 OS=Rhizobium meliloti
(strain 1021) GN=nuoE1 PE=3 SV=1
Length = 275
Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 103/203 (50%), Gaps = 43/203 (21%)
Query: 31 LFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISA 90
+ V R +D F F+ +N AEA I YP G E++AVIPLL AQ Q GW+ +A
Sbjct: 1 MSVRRLAEDTVQPAAFAFSKENAAWAEATIKKYPEGREQSAVIPLLMRAQEQDGWVTRAA 60
Query: 91 MHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
+ VAD L + +RV EVATFYT F +P+G + H+ C TTPC LR ++ ++
Sbjct: 61 IESVADMLGMAYIRVLEVATFYTQFQLQPVG-------TRAHVQVCGTTPCMLRGAEDLI 113
Query: 151 EVIKKK--------------------CN--------MMLER---QDLEPKDMEQIIDDLK 179
++ KKK C +M+ + +DL P+ +E+IID +
Sbjct: 114 KICKKKIASEPFTLNEGGTLSWEEVECQGACVNAPMVMIFKDTFEDLTPERLEEIIDRFE 173
Query: 180 AGK--KPAPGPS---GYTSGIGS 197
AGK + PGP Y++ IG
Sbjct: 174 AGKGSEVVPGPQIDRVYSAPIGG 196
>sp|P29914|NQO2_PARDE NADH-quinone oxidoreductase chain 2 OS=Paracoccus denitrificans
GN=nqo2 PE=1 SV=1
Length = 239
Score = 97.4 bits (241), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 98/211 (46%), Gaps = 53/211 (25%)
Query: 45 KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR 104
FEFTP N + A A ++ YP G +++A+IP+L AQ Q GWL A+ Y AD L +P +R
Sbjct: 12 SFEFTPANLEWARAQMTKYPEGRQQSAIIPVLWRAQEQEGWLSRPAIEYCADLLGMPYIR 71
Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK-------- 156
EVATFY MF +P+G H+ C TT C + ++ ++ V K+K
Sbjct: 72 ALEVATFYFMFQLQPVGS-------VAHIQICGTTTCMICGAEDLIRVCKEKIAPEPHAL 124
Query: 157 -----------------CNMMLER------QDLEPKDMEQIIDDLKAGKKPAPGPSGYTS 193
N + + +DL + + +ID AG+ P PGP
Sbjct: 125 SADGRFSWEEVECLGACTNAPMAQIGKDFYEDLTVEKLAALIDRFAAGEVPVPGP----- 179
Query: 194 GIGSQSGRFCQAREAYHDMTSLT----GEPH 220
Q+GRF + EA T+L GE H
Sbjct: 180 ----QNGRF--SAEALGGPTALADLKGGEAH 204
>sp|P56910|NUOE2_RHIME NADH-quinone oxidoreductase subunit E 2 OS=Rhizobium meliloti
(strain 1021) GN=nuoE2 PE=3 SV=2
Length = 168
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 10/98 (10%)
Query: 53 KKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFY 112
++ EA + YP R+A++P L +AQ++HG LP + VA L + ++ VYE+ATFY
Sbjct: 4 REEIEAAAARYP--DRRSAIMPALMIAQKEHGHLPGPVLEEVAQILGVERVWVYELATFY 61
Query: 113 TMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAIL 150
T+F +PIG ++HL C C L S+A+L
Sbjct: 62 TLFHTEPIG--------RFHLQLCDNVSCMLCGSEALL 91
>sp|P0AFD3|NUOE_SHIFL NADH-quinone oxidoreductase subunit E OS=Shigella flexneri GN=nuoE
PE=3 SV=1
Length = 166
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 69 RAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSI 128
RAA I L + Q+Q GW+P A+H +AD L +P V VATFY+ R+P+G I+
Sbjct: 33 RAASIEALKIVQKQRGWVPDGAIHAIADVLGIPASDVEGVATFYSQIFRQPVGRHVIR-- 90
Query: 129 LQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
+C + C + I ++KK N+
Sbjct: 91 ------YCDSVVCHINGYQGIQAALEKKLNI 115
>sp|P0AFD1|NUOE_ECOLI NADH-quinone oxidoreductase subunit E OS=Escherichia coli (strain
K12) GN=nuoE PE=1 SV=1
Length = 166
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 69 RAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSI 128
RAA I L + Q+Q GW+P A+H +AD L +P V VATFY+ R+P+G I+
Sbjct: 33 RAASIEALKIVQKQRGWVPDGAIHAIADVLGIPASDVEGVATFYSQIFRQPVGRHVIR-- 90
Query: 129 LQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
+C + C + I ++KK N+
Sbjct: 91 ------YCDSVVCHINGYQGIQAALEKKLNI 115
>sp|P0AFD2|NUOE_ECOL6 NADH-quinone oxidoreductase subunit E OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=nuoE PE=3 SV=1
Length = 166
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 69 RAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSI 128
RAA I L + Q+Q GW+P A+H +AD L +P V VATFY+ R+P+G I+
Sbjct: 33 RAASIEALKIVQKQRGWVPDGAIHAIADVLGIPASDVEGVATFYSQIFRQPVGRHVIR-- 90
Query: 129 LQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
+C + C + I ++KK N+
Sbjct: 91 ------YCDSVVCHINGYQGIQAALEKKLNI 115
>sp|P65573|NUOE_MYCTU NADH-quinone oxidoreductase subunit E OS=Mycobacterium tuberculosis
GN=nuoE PE=1 SV=1
Length = 252
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 58/112 (51%), Gaps = 14/112 (12%)
Query: 48 FTPDNKKR----AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
+ PD R A+ II YP R+A++PLL L Q + +L + + + AD L L
Sbjct: 32 YPPDVLARLEVDAKEIIGRYP--DRRSALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGA 89
Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
V VA+FYTM+ R+P GE Y + CT T C + DAI + +K+
Sbjct: 90 EVSAVASFYTMYRRRPTGE--------YLVGVCTNTLCAVMGGDAIFDRLKE 133
>sp|P65574|NUOE_MYCBO NADH-quinone oxidoreductase subunit E OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=nuoE PE=3 SV=1
Length = 252
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 58/112 (51%), Gaps = 14/112 (12%)
Query: 48 FTPDNKKR----AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103
+ PD R A+ II YP R+A++PLL L Q + +L + + + AD L L
Sbjct: 32 YPPDVLARLEVDAKEIIGRYP--DRRSALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGA 89
Query: 104 RVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKK 155
V VA+FYTM+ R+P GE Y + CT T C + DAI + +K+
Sbjct: 90 EVSAVASFYTMYRRRPTGE--------YLVGVCTNTLCAVMGGDAIFDRLKE 133
>sp|P0A1Y8|NUOE_SALTY NADH-quinone oxidoreductase subunit E OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=nuoE PE=3 SV=1
Length = 166
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 69 RAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSI 128
RAA I L + Q+Q GW+P A++ +AD L +P V VATFY+ R+P+G I+
Sbjct: 33 RAASIEALKIVQKQRGWVPDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVGRHVIR-- 90
Query: 129 LQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
+C + C + I ++K N+
Sbjct: 91 ------YCDSVVCHITGYQGIQAALEKNLNI 115
>sp|P0A1Y9|NUOE_SALTI NADH-quinone oxidoreductase subunit E OS=Salmonella typhi GN=nuoE
PE=3 SV=1
Length = 166
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 69 RAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSI 128
RAA I L + Q+Q GW+P A++ +AD L +P V VATFY+ R+P+G I+
Sbjct: 33 RAASIEALKIVQKQRGWVPDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVGRHVIR-- 90
Query: 129 LQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
+C + C + I ++K N+
Sbjct: 91 ------YCDSVVCHITGYQGIQAALEKNLNI 115
>sp|Q9I0J8|NUOE_PSEAE NADH-quinone oxidoreductase subunit E OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=nuoE PE=3 SV=1
Length = 166
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 69 RAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSI 128
RAA I L + Q+Q GW+P A+ + + L +P V VATFY+ R+P+G I+
Sbjct: 33 RAASIEALKIVQKQRGWVPDGAIPAIGEVLGIPASDVEGVATFYSQIFRQPVGRHIIR-- 90
Query: 129 LQYHLNWCTTTPCWLRNSDAILEVIKKKCNMML 161
C + C++ ++++ I+K+ + L
Sbjct: 91 ------VCDSMVCYIGGHESVVGEIQKQLGIGL 117
>sp|O13691|NDUV2_SCHPO NADH-ubiquinone oxidoreductase 24 kDa subunit homolog C11E3.12,
mitochondrial OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=SPAC11E3.12 PE=3 SV=1
Length = 162
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
Query: 48 FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHG-WLPISAMHYVADF 97
F P+N + A+AI++ YP+ + AA++PLLDLAQRQHG W+P +AM+ +A
Sbjct: 7 FKPENLQLAKAILARYPLRFQSAALVPLLDLAQRQHGTWIPPTAMYEIASL 57
>sp|Q46505|HNDA_DESFR NADP-reducing hydrogenase subunit HndA OS=Desulfovibrio
fructosovorans GN=hndA PE=1 SV=1
Length = 171
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 11/108 (10%)
Query: 72 VIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQY 131
++ +L AQ G+LPI +VAD + +P +VY V +FYT F P G +Y
Sbjct: 42 LVTVLHKAQSVFGYLPIEVQQFVADHMEVPLAQVYGVVSFYTFFTMVPKG--------KY 93
Query: 132 HLNWCTTTPCWLRNSDAILEVIKKKCNMMLERQDLEPKDMEQIIDDLK 179
++ C T C+++ +D ++ K++ + ++ D+ P D ID L+
Sbjct: 94 PISVCMGTACFVKGADKVVHAFKEQ--LKIDIGDVTP-DGRFSIDTLR 138
>sp|Q89AU3|NUOE_BUCBP NADH-quinone oxidoreductase subunit E OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=nuoE PE=3 SV=1
Length = 171
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 42 LDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP 101
+D+KF+ T K II Y R+++I +L Q+ +GW+ + +A L +
Sbjct: 13 IDIKFKLTIQEKIEIFNIIKNYRTV--RSSLIEILKFVQKSYGWISNELITELACILKIS 70
Query: 102 KMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM 159
K + E+ATFY+ R+PIG IK +C + C++ + I ++K N+
Sbjct: 71 KCDIEEIATFYSQIFRQPIGRNIIK--------YCDSVVCYVNGCEKIRCSLEKNLNV 120
>sp|Q56221|NQO2_THET8 NADH-quinone oxidoreductase subunit 2 OS=Thermus thermophilus
(strain HB8 / ATCC 27634 / DSM 579) GN=nqo2 PE=1 SV=3
Length = 181
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 48 FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
F D + E + YP RAA++PLL Q++ GW+ + +A + V
Sbjct: 3 FFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMG 62
Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAI 149
VA+FY+ + P G +YHL C T C L ++ +
Sbjct: 63 VASFYSYYQFVPTG--------KYHLQVCATLSCKLAGAEEL 96
>sp|Q8K9Y4|NUOE_BUCAP NADH-quinone oxidoreductase subunit E OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=nuoE PE=3 SV=1
Length = 168
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 67 HERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIK 126
+ R+ I L + Q++ GW+ A+ +A+ LNL V VATFY+ R+P+G I+
Sbjct: 33 NSRSVSIEALKIVQKKRGWVCDQAIIEIANILNLNPSEVESVATFYSQIYRQPVGRNVIR 92
Query: 127 SILQYHLNWCTTTPCWLRNSDAI 149
+C + C+L + I
Sbjct: 93 --------YCDSVVCYLTGYEKI 107
>sp|P57255|NUOE_BUCAI NADH-quinone oxidoreductase subunit E OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=nuoE PE=3 SV=1
Length = 162
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 69 RAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSI 128
RA I L + Q++ GW+ A++ +A+ L++ V VATFY+ RKP+G I+
Sbjct: 29 RAISIEALKIVQKKRGWVSDQAIYAIAEILHINPSDVEGVATFYSQIFRKPVGRNIIR-- 86
Query: 129 LQYHLNWCTTTPCWL 143
+C + C+L
Sbjct: 87 ------YCDSVVCFL 95
>sp|O66842|NUOE_AQUAE NADH-quinone oxidoreductase subunit E OS=Aquifex aeolicus (strain
VF5) GN=nuoE PE=3 SV=1
Length = 160
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 45 KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR 104
+FEF + K + + I+ +P +R A++ L Q +G++P ++ +AD L LP
Sbjct: 5 EFEFPEELKTKLQEHINYFP--KKRQAILLCLHEIQNYYGYIPPESLKPLADMLELPLNH 62
Query: 105 VYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIK 154
V V FY MF R E++ K Y + C + C L ++ +L+ ++
Sbjct: 63 VEGVVAFYDMFDR----EDKAK----YRIRVCVSIVCHLMGTNKLLKALE 104
>sp|P22317|HOXF_CUPNH NAD-reducing hydrogenase HoxS subunit alpha OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=hoxF PE=1 SV=1
Length = 602
Score = 38.5 bits (88), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 68 ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKS 127
+R +I +L Q ++G +P + + + L L + + E A+FY F+ KP G
Sbjct: 15 DRTRLIDILWDVQHEYGHIPDAVLPQLGAGLKLSPLDIRETASFYHFFLDKPSG------ 68
Query: 128 ILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLERQDLEPKDMEQIID 176
+Y + C + + A+ E ++++ + D P M + D
Sbjct: 69 --KYRIYLCNSVIAKINGYQAVREALERETGIRFGETD--PNGMFGLFD 113
>sp|Q7YQL3|PAK3_PONPY Serine/threonine-protein kinase PAK 3 OS=Pongo pygmaeus GN=PAK3
PE=2 SV=1
Length = 559
Score = 33.9 bits (76), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 22/126 (17%)
Query: 28 HDALFVHRDTKDDNL-----------DVKF--EFTPDNKKRAEAIISIYPVGHE---RAA 71
H +HRD K DN+ D F + TP+ KR+ + + Y + E R A
Sbjct: 394 HSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKA 453
Query: 72 VIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR-VYEVATFYTMFIRKPIGEERIKSILQ 130
P +D+ G + I + +LN +R +Y +AT T ++ P ER+ ++ +
Sbjct: 454 YGPKVDIWSL--GIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNP---ERLSAVFR 508
Query: 131 YHLNWC 136
LN C
Sbjct: 509 DFLNRC 514
>sp|Q7YQL4|PAK3_PANTR Serine/threonine-protein kinase PAK 3 OS=Pan troglodytes GN=PAK3
PE=2 SV=1
Length = 559
Score = 33.9 bits (76), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 22/126 (17%)
Query: 28 HDALFVHRDTKDDNL-----------DVKF--EFTPDNKKRAEAIISIYPVGHE---RAA 71
H +HRD K DN+ D F + TP+ KR+ + + Y + E R A
Sbjct: 394 HSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKA 453
Query: 72 VIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR-VYEVATFYTMFIRKPIGEERIKSILQ 130
P +D+ G + I + +LN +R +Y +AT T ++ P ER+ ++ +
Sbjct: 454 YGPKVDIWSL--GIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNP---ERLSAVFR 508
Query: 131 YHLNWC 136
LN C
Sbjct: 509 DFLNRC 514
>sp|O75914|PAK3_HUMAN Serine/threonine-protein kinase PAK 3 OS=Homo sapiens GN=PAK3 PE=1
SV=2
Length = 559
Score = 33.9 bits (76), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 22/126 (17%)
Query: 28 HDALFVHRDTKDDNL-----------DVKF--EFTPDNKKRAEAIISIYPVGHE---RAA 71
H +HRD K DN+ D F + TP+ KR+ + + Y + E R A
Sbjct: 394 HSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKA 453
Query: 72 VIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR-VYEVATFYTMFIRKPIGEERIKSILQ 130
P +D+ G + I + +LN +R +Y +AT T ++ P ER+ ++ +
Sbjct: 454 YGPKVDIWSL--GIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNP---ERLSAVFR 508
Query: 131 YHLNWC 136
LN C
Sbjct: 509 DFLNRC 514
>sp|Q61036|PAK3_MOUSE Serine/threonine-protein kinase PAK 3 OS=Mus musculus GN=Pak3 PE=1
SV=2
Length = 559
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 22/126 (17%)
Query: 28 HDALFVHRDTKDDNL-----------DVKF--EFTPDNKKRAEAIISIYPVGHE---RAA 71
H +HRD K DN+ D F + TP+ KR+ + + Y + E R A
Sbjct: 394 HSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKA 453
Query: 72 VIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR-VYEVATFYTMFIRKPIGEERIKSILQ 130
P +D+ G + I + +LN +R +Y +AT T ++ P ER+ ++ +
Sbjct: 454 YGPKVDIWSL--GIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNP---ERLSAVFR 508
Query: 131 YHLNWC 136
LN C
Sbjct: 509 DFLNRC 514
>sp|Q62829|PAK3_RAT Serine/threonine-protein kinase PAK 3 OS=Rattus norvegicus GN=Pak3
PE=1 SV=1
Length = 544
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 22/126 (17%)
Query: 28 HDALFVHRDTKDDNL-----------DVKF--EFTPDNKKRAEAIISIYPVGHE---RAA 71
H +HRD K DN+ D F + TP+ KR+ + + Y + E R A
Sbjct: 379 HSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKA 438
Query: 72 VIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR-VYEVATFYTMFIRKPIGEERIKSILQ 130
P +D+ G + I + +LN +R +Y +AT T ++ P ER+ ++ +
Sbjct: 439 YGPKVDIWSL--GIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNP---ERLSAVFR 493
Query: 131 YHLNWC 136
LN C
Sbjct: 494 DFLNRC 499
>sp|Q08E52|PAK1_BOVIN Serine/threonine-protein kinase PAK 1 OS=Bos taurus GN=PAK1 PE=1
SV=1
Length = 544
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 22/126 (17%)
Query: 28 HDALFVHRDTKDDNL-----------DVKF--EFTPDNKKRAEAIISIYPVGHE---RAA 71
H +HRD K DN+ D F + TP+ KR+ + + Y + E R A
Sbjct: 380 HSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKA 439
Query: 72 VIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR-VYEVATFYTMFIRKPIGEERIKSILQ 130
P +D+ G + I + +LN +R +Y +AT T ++ P E++ +I +
Sbjct: 440 YGPKVDIWSL--GIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNP---EKLSAIFR 494
Query: 131 YHLNWC 136
LN C
Sbjct: 495 DFLNRC 500
>sp|P35465|PAK1_RAT Serine/threonine-protein kinase PAK 1 OS=Rattus norvegicus GN=Pak1
PE=1 SV=3
Length = 544
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 22/126 (17%)
Query: 28 HDALFVHRDTKDDNL-----------DVKF--EFTPDNKKRAEAIISIYPVGHE---RAA 71
H +HRD K DN+ D F + TP+ KR+ + + Y + E R A
Sbjct: 380 HSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKA 439
Query: 72 VIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR-VYEVATFYTMFIRKPIGEERIKSILQ 130
P +D+ G + I + +LN +R +Y +AT T ++ P E++ +I +
Sbjct: 440 YGPKVDIWSL--GIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNP---EKLSAIFR 494
Query: 131 YHLNWC 136
LN C
Sbjct: 495 DFLNRC 500
>sp|Q13153|PAK1_HUMAN Serine/threonine-protein kinase PAK 1 OS=Homo sapiens GN=PAK1 PE=1
SV=2
Length = 545
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 22/126 (17%)
Query: 28 HDALFVHRDTKDDNL-----------DVKF--EFTPDNKKRAEAIISIYPVGHE---RAA 71
H +HRD K DN+ D F + TP+ KR+ + + Y + E R A
Sbjct: 381 HSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKA 440
Query: 72 VIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR-VYEVATFYTMFIRKPIGEERIKSILQ 130
P +D+ G + I + +LN +R +Y +AT T ++ P E++ +I +
Sbjct: 441 YGPKVDIWSL--GIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNP---EKLSAIFR 495
Query: 131 YHLNWC 136
LN C
Sbjct: 496 DFLNRC 501
>sp|Q3TLS3|GDPP1_MOUSE GDP-D-glucose phosphorylase 1 OS=Mus musculus GN=Gdpgp1 PE=2 SV=2
Length = 386
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 15/81 (18%)
Query: 166 LEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQS----GRFCQA------REAYHDMTSL 215
L+PK ++ L PAPG YTSG G R C+A RE H++
Sbjct: 239 LDPKGCIHLLQAL-----PAPGFLFYTSGPGPDLEVLISRVCRATDYLSDREIAHNLFVT 293
Query: 216 TGEPHGPWDSKRDFCIITMII 236
G P GP S D I +I+
Sbjct: 294 RGAPPGPTSSTSDLSGIRVIL 314
>sp|A6VU64|TRPD_MARMS Anthranilate phosphoribosyltransferase OS=Marinomonas sp. (strain
MWYL1) GN=trpD PE=3 SV=1
Length = 346
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 153 IKKKCNMMLERQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDM 212
IKK ++ERQDL +M+ ++ D+ GK G+ G+ + + A M
Sbjct: 3 IKKAIAAVVERQDLSGGEMQVVMHDIMTGKATPAQIGGFLIGLRMKGETVEEITAAAQVM 62
Query: 213 TSLTGEPH 220
SL+ + H
Sbjct: 63 RSLSSKVH 70
>sp|P05444|CLPA_RHOBL ClpA homolog protein OS=Rhodopseudomonas blastica PE=3 SV=1
Length = 793
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 34 HRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHE 68
R T +D V+ FTP+ + R +A+IS P+G E
Sbjct: 652 ERRTGEDTAAVERTFTPEFRNRLDAVISFAPLGRE 686
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,625,535
Number of Sequences: 539616
Number of extensions: 3603942
Number of successful extensions: 9397
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 9316
Number of HSP's gapped (non-prelim): 64
length of query: 240
length of database: 191,569,459
effective HSP length: 114
effective length of query: 126
effective length of database: 130,053,235
effective search space: 16386707610
effective search space used: 16386707610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)