Query psy8528
Match_columns 240
No_of_seqs 267 out of 1285
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 21:14:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8528.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8528hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i9v_2 NADH-quinone oxidoreduc 100.0 7.2E-42 2.5E-46 292.1 14.6 132 46-185 1-164 (181)
2 2auv_A Potential NAD-reducing 99.2 9.2E-12 3.1E-16 92.6 4.0 54 117-178 1-85 (85)
3 1m2d_A [2Fe-2S] ferredoxin; th 98.9 1.6E-09 5.5E-14 84.2 5.0 56 129-184 2-96 (110)
4 1akh_A Protein (mating-type pr 79.7 3 0.0001 28.0 4.7 35 72-106 16-50 (61)
5 2k9l_A RNA polymerase sigma fa 78.1 2.8 9.5E-05 30.2 4.4 68 42-111 4-71 (76)
6 1ig7_A Homeotic protein MSX-1; 77.9 4.2 0.00015 27.0 5.0 34 73-106 12-45 (58)
7 1jgg_A Segmentation protein EV 76.5 4.3 0.00015 27.2 4.7 34 73-106 13-46 (60)
8 3a03_A T-cell leukemia homeobo 75.8 4.7 0.00016 26.8 4.7 34 73-106 9-42 (56)
9 2da2_A Alpha-fetoprotein enhan 74.6 5.4 0.00019 27.5 5.0 32 75-106 21-52 (70)
10 2h1k_A IPF-1, pancreatic and d 74.3 5.2 0.00018 27.2 4.7 34 73-106 15-48 (63)
11 2hdd_A Protein (engrailed home 74.2 5.4 0.00018 26.9 4.7 34 73-106 15-48 (61)
12 2dmu_A Homeobox protein goosec 73.7 5.4 0.00018 27.6 4.7 26 81-106 27-52 (70)
13 2cra_A Homeobox protein HOX-B1 73.3 6.1 0.00021 27.4 5.0 31 76-106 22-52 (70)
14 3a02_A Homeobox protein arista 72.8 6 0.0002 26.5 4.7 33 74-106 12-44 (60)
15 2vi6_A Homeobox protein nanog; 72.8 6.2 0.00021 26.6 4.8 33 74-106 16-48 (62)
16 2e1o_A Homeobox protein PRH; D 72.7 6.3 0.00022 27.3 4.9 26 81-106 27-52 (70)
17 1bw5_A ISL-1HD, insulin gene e 71.9 6.4 0.00022 26.9 4.7 34 73-106 15-48 (66)
18 1ftt_A TTF-1 HD, thyroid trans 70.2 7 0.00024 27.0 4.7 34 73-106 14-47 (68)
19 2da3_A Alpha-fetoprotein enhan 69.6 7.1 0.00024 27.5 4.7 26 81-106 37-62 (80)
20 2dmq_A LIM/homeobox protein LH 68.9 8.3 0.00028 27.2 5.0 26 81-106 27-52 (80)
21 2djn_A Homeobox protein DLX-5; 68.5 6.1 0.00021 27.4 4.1 24 83-106 29-52 (70)
22 1puf_A HOX-1.7, homeobox prote 68.3 8 0.00027 27.3 4.7 31 76-106 28-58 (77)
23 2dmt_A Homeobox protein BARH-l 68.3 8 0.00027 27.5 4.8 25 82-106 38-62 (80)
24 2k40_A Homeobox expressed in E 68.0 6 0.0002 27.1 3.9 33 74-106 14-46 (67)
25 2da1_A Alpha-fetoprotein enhan 67.5 5.7 0.00019 27.4 3.7 25 82-106 28-52 (70)
26 3rkq_A Homeobox protein NKX-2. 67.2 6.7 0.00023 25.7 3.9 25 82-106 23-47 (58)
27 2dms_A Homeobox protein OTX2; 67.1 9.4 0.00032 27.1 4.9 31 76-106 22-52 (80)
28 1nk2_P Homeobox protein VND; h 66.4 10 0.00035 26.7 5.0 26 81-106 29-54 (77)
29 1du6_A PBX1, homeobox protein 66.1 7.1 0.00024 26.4 4.0 25 82-106 27-51 (64)
30 1wh5_A ZF-HD homeobox family p 65.9 14 0.00046 26.7 5.6 45 46-106 22-66 (80)
31 2kt0_A Nanog, homeobox protein 65.3 11 0.00036 26.9 4.9 25 82-106 43-67 (84)
32 2l7z_A Homeobox protein HOX-A1 64.7 10 0.00035 26.6 4.6 31 76-106 22-52 (73)
33 2m0c_A Homeobox protein arista 63.7 11 0.00039 26.0 4.7 25 82-106 30-54 (75)
34 1fjl_A Paired protein; DNA-bin 63.7 12 0.0004 26.6 4.9 33 74-106 31-63 (81)
35 2da5_A Zinc fingers and homeob 63.6 11 0.00039 26.5 4.8 33 75-107 21-53 (75)
36 1zq3_P PRD-4, homeotic bicoid 62.4 8.6 0.00029 26.5 3.9 26 81-106 22-47 (68)
37 2l9r_A Homeobox protein NKX-3. 62.2 14 0.00047 26.2 5.0 35 72-106 15-49 (69)
38 2cue_A Paired box protein PAX6 61.9 9.4 0.00032 27.1 4.1 24 83-106 29-52 (80)
39 2dn0_A Zinc fingers and homeob 61.6 9.6 0.00033 26.8 4.1 41 47-107 14-54 (76)
40 3k2a_A Homeobox protein MEIS2; 61.6 17 0.00057 25.2 5.3 25 82-106 22-46 (67)
41 2ecc_A Homeobox and leucine zi 61.6 14 0.00047 27.0 5.0 25 82-106 24-48 (76)
42 1k61_A Mating-type protein alp 61.4 15 0.00052 24.4 4.9 24 83-106 23-46 (60)
43 1ahd_P Antennapedia protein mu 60.8 8.9 0.0003 26.5 3.7 33 74-106 15-47 (68)
44 1b8i_A Ultrabithorax, protein 59.7 14 0.00048 26.4 4.7 32 75-106 34-65 (81)
45 1uhs_A HOP, homeodomain only p 59.2 13 0.00043 25.9 4.3 34 73-106 13-47 (72)
46 2ly9_A Zinc fingers and homeob 58.0 17 0.00057 25.2 4.8 25 82-106 27-51 (74)
47 2hi3_A Homeodomain-only protei 57.6 14 0.00049 25.7 4.4 33 74-106 15-48 (73)
48 3m6z_A Topoisomerase V; helix- 56.9 6.7 0.00023 35.2 3.1 68 45-119 159-233 (380)
49 2e19_A Transcription factor 8; 56.9 13 0.00043 25.8 3.9 34 73-106 15-48 (64)
50 2yqk_A Arginine-glutamic acid 56.8 12 0.00041 26.0 3.8 51 46-121 10-60 (63)
51 3nau_A Zinc fingers and homeob 55.2 16 0.00056 26.2 4.3 34 73-106 16-49 (66)
52 1b72_A Protein (homeobox prote 55.2 13 0.00043 27.5 3.9 26 81-106 54-79 (97)
53 2r5y_A Homeotic protein sex co 54.7 14 0.00049 26.6 4.1 25 82-106 49-73 (88)
54 3ccy_A Putative TETR-family tr 54.4 7.2 0.00025 30.2 2.6 44 68-118 15-58 (203)
55 1b72_B Protein (PBX1); homeodo 53.0 15 0.00052 26.3 4.0 26 82-107 25-50 (87)
56 3he0_A Transcriptional regulat 52.5 6.8 0.00023 29.7 2.1 46 67-119 11-56 (196)
57 2g7g_A RHA04620, putative tran 52.4 5.3 0.00018 32.3 1.5 42 68-118 12-53 (213)
58 1puf_B PRE-B-cell leukemia tra 52.3 16 0.00056 25.2 4.0 25 83-107 26-50 (73)
59 1zk8_A Transcriptional regulat 52.3 6.5 0.00022 29.7 2.0 46 67-119 8-53 (183)
60 2dmp_A Zinc fingers and homeob 51.5 22 0.00077 25.9 4.7 26 81-106 33-58 (89)
61 1x2n_A Homeobox protein pknox1 50.6 27 0.00091 24.1 4.8 24 83-106 32-55 (73)
62 3a01_A Homeodomain-containing 50.4 21 0.00072 26.2 4.5 41 46-106 22-62 (93)
63 2iu5_A DHAS, YCEG, HTH-type dh 50.3 7.6 0.00026 30.0 2.1 44 68-118 14-57 (195)
64 1yz8_P Pituitary homeobox 2; D 49.6 6.6 0.00022 27.1 1.5 24 83-106 25-48 (68)
65 2cuf_A FLJ21616 protein; homeo 49.4 20 0.00068 26.3 4.2 33 75-107 21-68 (95)
66 3nxc_A HTH-type protein SLMA; 49.2 6.8 0.00023 30.1 1.6 46 67-119 24-70 (212)
67 3kkc_A TETR family transcripti 49.1 6.2 0.00021 29.6 1.4 44 69-119 14-57 (177)
68 2cqx_A LAG1 longevity assuranc 48.9 17 0.00058 25.6 3.6 34 73-106 20-54 (72)
69 2ecb_A Zinc fingers and homeob 48.1 29 0.001 25.8 5.0 26 81-106 31-56 (89)
70 3vdj_A Circumsporozoite (CS) p 47.4 15 0.00051 27.3 3.1 47 167-213 7-54 (77)
71 2dg7_A Putative transcriptiona 47.3 6 0.0002 30.4 1.0 45 68-119 8-52 (195)
72 2iai_A Putative transcriptiona 46.7 13 0.00043 29.7 2.9 45 68-119 31-75 (230)
73 1le8_B Mating-type protein alp 46.7 32 0.0011 24.5 4.9 25 83-107 27-51 (83)
74 3oit_A OS07G0271500 protein; t 46.6 4 0.00014 37.2 -0.1 43 144-187 301-354 (387)
75 3nar_A ZHX1, zinc fingers and 45.2 32 0.0011 25.2 4.8 33 74-106 38-70 (96)
76 4dh4_A MIF; trimer, isomerase; 44.8 30 0.001 25.7 4.7 77 89-169 22-105 (114)
77 2pmy_A RAS and EF-hand domain- 44.7 12 0.0004 26.1 2.2 60 34-108 7-66 (91)
78 3qbm_A TETR transcriptional re 44.1 10 0.00034 28.7 1.8 44 69-119 9-52 (199)
79 3him_A Probable transcriptiona 43.9 11 0.00036 28.8 2.0 44 69-119 18-61 (211)
80 3gha_A Disulfide bond formatio 43.8 60 0.0021 26.3 6.7 81 71-182 99-194 (202)
81 1mnm_C Protein (MAT alpha-2 tr 43.7 38 0.0013 24.3 4.9 44 46-106 32-75 (87)
82 2csb_A Topoisomerase V, TOP61; 43.6 12 0.00041 34.7 2.5 69 45-120 159-234 (519)
83 2hxo_A Putative TETR-family tr 43.4 13 0.00046 30.6 2.7 44 68-118 17-60 (237)
84 1tc3_C Protein (TC3 transposas 43.3 17 0.0006 21.5 2.6 23 91-113 24-46 (51)
85 1c07_A Protein (epidermal grow 43.3 18 0.00062 25.7 3.0 48 46-108 2-49 (95)
86 2rae_A Transcriptional regulat 43.1 8.6 0.00029 29.6 1.3 45 68-119 18-62 (207)
87 3rd3_A Probable transcriptiona 43.0 11 0.00039 28.3 2.0 45 68-119 11-55 (197)
88 3h11_A CAsp8 and FADD-like apo 43.0 36 0.0012 29.9 5.5 57 110-181 34-91 (272)
89 2da4_A Hypothetical protein DK 42.2 11 0.00038 26.7 1.8 44 47-106 14-57 (80)
90 2qib_A TETR-family transcripti 42.2 6.6 0.00022 31.5 0.5 43 69-118 15-57 (231)
91 2g7l_A TETR-family transcripti 42.1 13 0.00045 30.9 2.4 44 68-118 20-63 (243)
92 4hku_A LMO2814 protein, TETR t 41.6 15 0.00051 28.1 2.5 45 68-119 8-52 (178)
93 2lk2_A Homeobox protein TGIF1; 41.6 46 0.0016 25.0 5.1 46 45-107 9-54 (89)
94 1x2m_A LAG1 longevity assuranc 41.5 40 0.0014 23.7 4.5 37 70-106 9-46 (64)
95 3b81_A Transcriptional regulat 41.5 11 0.00039 28.6 1.8 44 69-119 13-56 (203)
96 3on2_A Probable transcriptiona 41.4 8.1 0.00028 29.2 0.9 45 68-119 13-57 (199)
97 3col_A Putative transcription 41.2 9.4 0.00032 28.7 1.3 45 68-119 11-55 (196)
98 3dcf_A Transcriptional regulat 40.7 9 0.00031 29.4 1.1 44 69-119 33-76 (218)
99 2dmn_A Homeobox protein TGIF2L 40.5 45 0.0016 23.8 4.9 25 83-107 32-56 (83)
100 3hug_A RNA polymerase sigma fa 40.2 7.1 0.00024 27.9 0.4 49 50-108 25-73 (92)
101 2v57_A TETR family transcripti 40.1 8.5 0.00029 29.2 0.9 27 87-119 31-57 (190)
102 2qko_A Possible transcriptiona 39.9 8.8 0.0003 30.0 1.0 44 68-118 29-72 (215)
103 1wh7_A ZF-HD homeobox family p 38.8 42 0.0014 24.2 4.4 22 85-106 45-66 (80)
104 2lxl_A Vacuolar protein sortin 38.6 16 0.00055 30.7 2.4 26 163-188 131-166 (183)
105 4gfj_A Topoisomerase V; helix- 38.6 15 0.00051 35.9 2.5 97 45-158 159-262 (685)
106 3aqt_A Bacterial regulatory pr 38.3 14 0.00048 29.8 2.0 44 69-119 48-91 (245)
107 3anp_C Transcriptional repress 38.1 10 0.00036 29.3 1.1 44 69-119 11-54 (204)
108 1fi6_A EH domain protein REPS1 37.9 26 0.00089 24.6 3.2 19 47-65 2-20 (92)
109 3lsj_A DEST; transcriptional r 37.7 17 0.00058 28.2 2.3 44 69-119 13-57 (220)
110 3eup_A Transcriptional regulat 37.4 16 0.00056 27.6 2.1 44 69-119 13-56 (204)
111 3qqa_A CMER; alpha-helical, he 37.2 14 0.00048 28.4 1.7 44 69-119 21-64 (216)
112 1z0x_A Transcriptional regulat 36.9 15 0.00052 29.6 2.0 44 68-118 6-50 (220)
113 2w53_A Repressor, SMet; antibi 36.7 17 0.00057 28.4 2.1 44 68-118 12-55 (219)
114 2lhi_A Calmodulin, serine/thre 36.7 13 0.00046 29.2 1.5 59 47-121 4-62 (176)
115 2cyy_A Putative HTH-type trans 36.6 66 0.0023 24.6 5.6 91 74-180 11-126 (151)
116 3d1n_I POU domain, class 6, tr 36.4 45 0.0016 26.4 4.7 35 72-106 104-138 (151)
117 2f07_A YVDT; helix-turn-helix, 36.3 10 0.00035 29.5 0.8 45 68-119 11-55 (197)
118 1hfo_A Migration inhibitory fa 36.3 23 0.00078 26.1 2.7 76 88-169 20-104 (113)
119 1wi3_A DNA-binding protein SAT 36.1 67 0.0023 23.5 5.1 30 77-106 24-53 (71)
120 3nrg_A TETR family transcripti 36.1 16 0.00055 28.0 1.9 45 68-119 14-58 (217)
121 1ui5_A A-factor receptor homol 35.7 11 0.00038 29.8 0.9 44 68-118 10-53 (215)
122 2e1c_A Putative HTH-type trans 35.5 58 0.002 26.0 5.3 91 74-180 31-146 (171)
123 1au7_A Protein PIT-1, GHF-1; c 35.4 49 0.0017 26.2 4.7 35 72-106 98-132 (146)
124 2fd5_A Transcriptional regulat 35.3 20 0.0007 26.9 2.4 43 70-119 10-52 (180)
125 3geu_A Intercellular adhesion 35.0 20 0.00069 27.1 2.3 43 70-119 6-48 (189)
126 3e1h_A PKSIIINC, putative unch 34.9 10 0.00035 35.9 0.7 54 144-197 326-396 (465)
127 2crg_A Metastasis associated p 34.8 35 0.0012 24.1 3.4 51 46-121 9-59 (70)
128 2q24_A Putative TETR family tr 34.2 25 0.00087 26.8 2.8 43 68-118 16-58 (194)
129 2ras_A Transcriptional regulat 34.2 19 0.00065 27.8 2.0 43 70-119 14-56 (212)
130 3il6_A 3-oxoacyl-[acyl-carrier 34.0 15 0.00051 32.2 1.6 53 144-196 247-309 (321)
131 1rkt_A Protein YFIR; transcrip 34.0 17 0.00059 28.1 1.8 42 70-118 15-56 (205)
132 3euo_A Type III pentaketide sy 33.6 5.7 0.00019 36.0 -1.3 44 144-187 297-353 (379)
133 2y2z_A SIM16, SIMR, putative r 33.3 19 0.00063 30.6 2.0 43 69-118 29-71 (267)
134 3kkd_A Transcriptional regulat 33.3 10 0.00035 30.1 0.4 45 68-119 36-80 (237)
135 2k9m_A RNA polymerase sigma fa 33.3 16 0.00053 29.0 1.4 38 81-121 33-70 (130)
136 1sfx_A Conserved hypothetical 33.2 78 0.0027 21.7 5.1 53 52-111 5-57 (109)
137 3fiw_A Putative TETR-family tr 33.1 17 0.00059 29.3 1.7 45 67-118 25-69 (211)
138 3crj_A Transcription regulator 32.9 18 0.00062 28.1 1.8 43 69-118 16-58 (199)
139 1e3o_C Octamer-binding transcr 32.9 56 0.0019 26.2 4.7 35 72-106 112-146 (160)
140 1eh2_A EPS15; calcium binding, 32.8 61 0.0021 24.0 4.6 50 44-109 5-54 (106)
141 1y6u_A XIS, excisionase from t 32.8 29 0.00099 24.6 2.7 31 91-121 19-50 (70)
142 2np3_A Putative TETR-family re 32.5 12 0.0004 29.2 0.6 45 68-119 31-75 (212)
143 3p45_A Caspase-6; protease, hu 32.4 1.4E+02 0.0049 24.7 7.3 64 108-180 33-105 (179)
144 3gwa_A 3-oxoacyl-(acyl-carrier 32.3 17 0.0006 32.5 1.8 54 144-197 293-354 (365)
145 2ibd_A Possible transcriptiona 31.9 14 0.00048 28.6 0.9 43 70-119 17-59 (204)
146 2d5v_A Hepatocyte nuclear fact 31.7 60 0.0021 25.8 4.7 36 72-107 108-143 (164)
147 2xsd_C POU domain, class 3, tr 31.3 61 0.0021 26.2 4.7 35 72-106 110-144 (164)
148 3bni_A Putative TETR-family tr 31.0 14 0.00049 29.4 0.8 44 69-119 45-88 (229)
149 3cdl_A Transcriptional regulat 30.6 23 0.00079 27.4 2.0 42 70-118 12-53 (203)
150 2vpr_A Tetracycline resistance 30.6 23 0.0008 28.5 2.1 44 68-118 5-48 (207)
151 1v9x_A Poly (ADP-ribose) polym 30.3 62 0.0021 25.2 4.4 40 160-199 71-113 (114)
152 2heo_A Z-DNA binding protein 1 30.3 50 0.0017 22.5 3.5 33 75-110 15-47 (67)
153 1i1g_A Transcriptional regulat 29.9 1.7E+02 0.0058 21.6 6.9 93 74-179 8-123 (141)
154 3iuz_A Putative glyoxalase sup 29.6 1.1E+02 0.0039 28.2 6.7 67 30-99 128-202 (340)
155 2lv7_A Calcium-binding protein 29.6 54 0.0019 23.7 3.8 50 44-108 26-77 (100)
156 2os5_A Acemif; macrophage migr 29.6 45 0.0015 24.8 3.4 76 88-169 21-105 (119)
157 3mnl_A KSTR, transcriptional r 29.5 16 0.00055 27.7 0.9 43 69-118 22-64 (203)
158 1uiz_A MIF, macrophage migrati 29.4 34 0.0012 25.2 2.7 76 88-169 21-105 (115)
159 3c57_A Two component transcrip 29.4 43 0.0015 24.1 3.2 51 47-108 12-62 (95)
160 2kvc_A Putative uncharacterize 29.2 71 0.0024 24.8 4.5 50 58-110 14-67 (103)
161 3vib_A MTRR; helix-turn-helix 29.0 16 0.00054 28.4 0.8 42 70-118 13-54 (210)
162 2da7_A Zinc finger homeobox pr 28.8 90 0.0031 22.7 4.7 34 73-106 17-50 (71)
163 2xcz_A Possible ATLS1-like lig 28.5 50 0.0017 24.3 3.5 75 89-169 22-105 (115)
164 3o60_A LIN0861 protein; PSI, M 28.3 15 0.00053 28.9 0.6 44 69-119 21-65 (185)
165 2hyj_A Putative TETR-family tr 27.7 26 0.0009 27.2 1.9 41 71-118 16-56 (200)
166 3fia_A Intersectin-1; EH 1 dom 27.7 75 0.0026 24.8 4.5 24 41-64 20-43 (121)
167 3ov2_A Curcumin synthase; type 27.6 11 0.00039 34.2 -0.3 54 144-197 304-375 (393)
168 4dfe_A 3-oxoacyl-[acyl-carrier 27.6 25 0.00084 30.7 1.8 50 145-194 262-319 (333)
169 2jt1_A PEFI protein; solution 27.5 47 0.0016 23.9 3.0 34 73-108 7-44 (77)
170 4ac0_A Tetracycline repressor 27.2 26 0.00089 28.3 1.8 43 69-118 5-47 (202)
171 3i4p_A Transcriptional regulat 26.8 1.1E+02 0.0036 23.9 5.4 92 74-178 7-123 (162)
172 3il3_A 3-oxoacyl-[acyl-carrier 26.6 26 0.00088 30.8 1.8 52 144-195 251-310 (323)
173 3v7i_A Putative polyketide syn 26.5 15 0.00052 34.0 0.3 53 144-197 337-401 (413)
174 2oi8_A Putative regulatory pro 26.1 29 0.00098 27.7 1.9 43 70-119 19-61 (216)
175 1z67_A Hypothetical protein S4 25.8 66 0.0022 26.0 3.9 34 88-121 75-111 (135)
176 1rr7_A Middle operon regulator 25.6 77 0.0026 24.8 4.3 76 29-110 12-114 (129)
177 4ewp_A 3-oxoacyl-[acyl-carrier 25.3 20 0.00067 31.4 0.8 53 144-196 276-337 (350)
178 2dnw_A Acyl carrier protein; A 25.0 99 0.0034 22.1 4.5 73 90-188 20-96 (99)
179 2v79_A DNA replication protein 24.8 28 0.00095 27.4 1.5 51 59-110 21-73 (135)
180 1tq4_A IIGP1, interferon-induc 24.7 50 0.0017 30.6 3.4 44 72-116 309-352 (413)
181 2wkb_A Macrophage migration in 24.6 27 0.00092 26.5 1.4 75 88-168 21-104 (125)
182 2kgr_A Intersectin-1; structur 24.5 67 0.0023 23.6 3.5 22 44-65 4-25 (111)
183 2l5l_A Thioredoxin; structural 24.1 1.3E+02 0.0046 21.8 5.2 26 163-188 109-134 (136)
184 1ufm_A COP9 complex subunit 4; 23.8 51 0.0017 24.0 2.7 21 91-111 33-53 (84)
185 3mva_O Transcription terminati 23.8 92 0.0032 27.5 4.9 44 53-96 178-223 (343)
186 1lfb_A Liver transcription fac 23.5 84 0.0029 23.6 3.9 33 74-106 22-75 (99)
187 3s21_A 3-oxoacyl-[ACP] synthas 23.2 25 0.00085 30.9 1.0 52 145-196 274-333 (345)
188 1jko_C HIN recombinase, DNA-in 23.1 47 0.0016 20.0 2.1 21 91-111 24-44 (52)
189 1mh3_A Maltose binding-A1 home 22.9 1.9E+02 0.0064 25.1 6.7 37 70-106 374-410 (421)
190 1d0q_A DNA primase; zinc-bindi 22.8 65 0.0022 23.9 3.2 33 68-103 66-98 (103)
191 1z4h_A TORI, TOR inhibition pr 22.6 52 0.0018 22.2 2.4 20 91-110 13-32 (66)
192 3qq6_A HTH-type transcriptiona 22.5 98 0.0034 21.0 3.9 24 84-107 49-72 (78)
193 2zcm_A Biofilm operon icaabcd 22.5 48 0.0016 25.0 2.4 45 67-118 7-51 (192)
194 3s8q_A R-M controller protein; 22.4 94 0.0032 20.8 3.7 23 85-107 50-72 (82)
195 3p04_A Uncharacterized BCR; SE 22.3 52 0.0018 24.6 2.5 41 139-179 11-51 (87)
196 3b7h_A Prophage LP1 protein 11 22.3 52 0.0018 21.6 2.3 25 85-109 47-71 (78)
197 2ewt_A BLDD, putative DNA-bind 22.2 66 0.0023 20.7 2.8 21 85-105 49-69 (71)
198 1klp_A ACP, ACPM, meromycolate 22.1 2.4E+02 0.0081 20.7 6.8 75 89-187 11-89 (115)
199 2b5a_A C.BCLI; helix-turn-heli 22.0 72 0.0025 20.9 3.0 23 85-107 49-71 (77)
200 2kfs_A Conserved hypothetical 21.4 51 0.0018 27.0 2.5 25 84-111 30-54 (148)
201 2r1j_L Repressor protein C2; p 21.3 76 0.0026 20.0 3.0 22 85-106 44-65 (68)
202 1y7y_A C.AHDI; helix-turn-heli 21.2 76 0.0026 20.5 3.0 22 85-106 52-73 (74)
203 2qwt_A Transcriptional regulat 21.1 64 0.0022 24.7 2.9 43 69-119 15-57 (196)
204 3eeq_A Putative cobalamin bios 21.1 1.1E+02 0.0038 27.7 4.9 51 130-184 92-163 (336)
205 2vn2_A DNAD, chromosome replic 21.0 86 0.0029 23.8 3.6 22 90-111 53-74 (128)
206 1lvw_A Glucose-1-phosphate thy 20.9 33 0.0011 29.7 1.3 50 50-101 230-279 (295)
207 2x48_A CAG38821; archeal virus 20.8 53 0.0018 20.7 2.0 20 90-109 33-52 (55)
208 2hin_A GP39, repressor protein 20.8 83 0.0028 22.3 3.2 19 91-109 13-31 (71)
209 3fwb_A Cell division control p 20.8 1.3E+02 0.0044 21.7 4.4 24 42-65 11-34 (161)
210 1j7q_A CAVP, calcium vector pr 20.7 1.2E+02 0.0041 20.0 4.0 59 47-121 7-68 (86)
211 2rek_A Putative TETR-family tr 20.7 37 0.0013 25.9 1.4 43 69-119 18-60 (199)
212 3omt_A Uncharacterized protein 20.4 44 0.0015 22.1 1.6 22 85-106 47-68 (73)
213 2ofy_A Putative XRE-family tra 20.2 93 0.0032 21.0 3.4 23 85-107 54-76 (86)
214 2p7v_B Sigma-70, RNA polymeras 20.2 55 0.0019 21.7 2.1 23 87-109 24-46 (68)
215 3t72_q RNA polymerase sigma fa 20.2 81 0.0028 23.5 3.2 54 50-109 7-60 (99)
216 3ejb_A Acyl carrier protein; p 20.0 1.3E+02 0.0045 21.7 4.3 17 146-162 59-75 (97)
No 1
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=100.00 E-value=7.2e-42 Score=292.07 Aligned_cols=132 Identities=26% Similarity=0.525 Sum_probs=124.7
Q ss_pred ccCCHHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccccCCcccc
Q psy8528 46 FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERI 125 (240)
Q Consensus 46 f~ft~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP~G~~~~ 125 (240)
+.|++++.+++++||++||.++++++|||+||++|+++||||+++|++||+.|+||+++||||||||+||+++|+|
T Consensus 1 m~~~~~~~~~i~~ii~~y~~~~~~~~li~~L~~~Q~~~G~l~~~~~~~iA~~l~l~~~~V~~VatFY~~f~~~P~g---- 76 (181)
T 3i9v_2 1 MGFFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYYQFVPTG---- 76 (181)
T ss_dssp --CTTTCHHHHHHHHTTSCTTCCGGGHHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHHHHHTTCSSCCSSCCC----
T ss_pred CCCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHHHhCCCCHHHHHHHHHHhCcCHHHHHHHHhHHhhcCCCCCC----
Confidence 4699999999999999999777999999999999999999999999999999999999999999999999999999
Q ss_pred cccccEEEEecCChhhhhcCHHHHHHHHHHHcCc----------------------------eEe----ecCCCHHhHHH
Q psy8528 126 KSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM----------------------------MLE----RQDLEPKDMEQ 173 (240)
Q Consensus 126 ~~~~K~~I~VC~~t~C~lrGs~~Il~~l~~~LgI----------------------------mv~----y~~Ltpe~i~~ 173 (240)
||+|+||++++|+++||++|+++|+++||+ +|| |+++|||++++
T Consensus 77 ----k~~I~VC~gt~C~~~Ga~~i~~~l~~~L~i~~gett~Dg~~tl~~~~ClG~C~~gPvv~V~~~~~y~~vt~e~v~~ 152 (181)
T 3i9v_2 77 ----KYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQVNDEPYVECVTRARLEA 152 (181)
T ss_dssp ----SEEEEEECSHHHHTTTHHHHHHHHHHHHTCCTTCCCTTSCEEEEEESCCSCGGGCSCEECSSSCCBCCCCHHHHHH
T ss_pred ----CEEEEECCCchhhhcCHHHHHHHHHHHhCcCCCCcCCCCcEEEEEcCCCCccCCCCEEEECCEEEEcCCCHHHHHH
Confidence 999999999999999999999999999985 455 99999999999
Q ss_pred HHHHHhcCCCCC
Q psy8528 174 IIDDLKAGKKPA 185 (240)
Q Consensus 174 IL~~lk~g~~p~ 185 (240)
||++|++|+++.
T Consensus 153 Il~~l~~g~~ve 164 (181)
T 3i9v_2 153 LLAGLRAGKRLE 164 (181)
T ss_dssp HHHHHHTTCCGG
T ss_pred HHHHHHcCCChh
Confidence 999999998753
No 2
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=99.19 E-value=9.2e-12 Score=92.63 Aligned_cols=54 Identities=20% Similarity=0.602 Sum_probs=49.0
Q ss_pred cccCCcccccccccEEEEecCChhhhhcCHHHHHHHHHHHcCc----------------------------eEe---ecC
Q psy8528 117 RKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNM----------------------------MLE---RQD 165 (240)
Q Consensus 117 ~kP~G~~~~~~~~K~~I~VC~~t~C~lrGs~~Il~~l~~~LgI----------------------------mv~---y~~ 165 (240)
++|+| ||+|.||++++|+.+||++|+++|+++|++ +|+ |++
T Consensus 1 ~~p~g--------~~~I~VC~g~~C~~~Ga~~v~~~l~~~l~~~~~~tt~d~~v~l~~~~ClG~C~~~P~v~V~~~~y~~ 72 (85)
T 2auv_A 1 MVPKG--------KYPISVCMGTACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCALAPIVMVGEKVYGN 72 (85)
T ss_dssp CCSCC--------SBCEECCCCHHHHTTTHHHHHHHHHHHHCCSSSSSSSSCCBCCBSSSSSSSCTTSCCCEEGGGCCCC
T ss_pred CCCCC--------CEEEEECCCchHHHcCHHHHHHHHHHHhCcccCCcCCCCeEEEEECCccCcCCCCCEEEECCEEECC
Confidence 47889 999999999999999999999999999864 555 999
Q ss_pred CCHHhHHHHHHHH
Q psy8528 166 LEPKDMEQIIDDL 178 (240)
Q Consensus 166 Ltpe~i~~IL~~l 178 (240)
+|||++++||+++
T Consensus 73 vt~e~v~~il~~~ 85 (85)
T 2auv_A 73 VTPGQVKKILAEY 85 (85)
T ss_dssp SSSSHHHHHHHHC
T ss_pred CCHHHHHHHHHhC
Confidence 9999999999863
No 3
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=98.87 E-value=1.6e-09 Score=84.24 Aligned_cols=56 Identities=21% Similarity=0.469 Sum_probs=48.3
Q ss_pred ccEEEEecCC--------hhhhhcCHHHHHHHHHHHcCc-------------------------eE--e---ecCCCHHh
Q psy8528 129 LQYHLNWCTT--------TPCWLRNSDAILEVIKKKCNM-------------------------ML--E---RQDLEPKD 170 (240)
Q Consensus 129 ~K~~I~VC~~--------t~C~lrGs~~Il~~l~~~LgI-------------------------mv--~---y~~Ltpe~ 170 (240)
+||+|.||++ ++|+.+||++|+++|+++|++ +| + |+++|+++
T Consensus 2 ~~~~I~VC~~~r~~~~~~~~C~~~Ga~~l~~~l~~~l~~~~g~~~~v~v~~~~ClG~C~~gP~v~V~P~~~~y~~vt~e~ 81 (110)
T 1m2d_A 2 EFKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVVVVYPDGVWYGQVKPED 81 (110)
T ss_dssp -CEEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCCSCGGGCSCEEEETTTEEECSCCGGG
T ss_pred CceEEEECCCCCCCCCCCCCchhcCHHHHHHHHHHHHHHhcCCCCeEEEEECCCCCccCCCCEEEEEeCCEEEecCCHHH
Confidence 4899999999 899999999999999997643 56 3 99999999
Q ss_pred HHHHHHH-HhcCCCC
Q psy8528 171 MEQIIDD-LKAGKKP 184 (240)
Q Consensus 171 i~~IL~~-lk~g~~p 184 (240)
+++||++ +.+|+++
T Consensus 82 v~~il~~~l~~g~~v 96 (110)
T 1m2d_A 82 VDEIVEKHLKGGEPV 96 (110)
T ss_dssp HHHHHHHTTTTSCCC
T ss_pred HHHHHHHHHHCCcCh
Confidence 9999998 6777654
No 4
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=79.71 E-value=3 Score=28.04 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 72 VIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 72 lIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
-+.+|...=..+.|.+.+....+|+.|||+..+|.
T Consensus 16 q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~ 50 (61)
T 1akh_A 16 ARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVR 50 (61)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 34555555556679999999999999999999885
No 5
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=78.10 E-value=2.8 Score=30.19 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=43.7
Q ss_pred CCccccCCHHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhh
Q psy8528 42 LDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATF 111 (240)
Q Consensus 42 ~~~~f~ft~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATF 111 (240)
....++.+++..+.+...+. .+-....-.+...|-..=+..||+..+ +..||+.|+++..+|..|..-
T Consensus 4 ~~~~~~~~~~e~ehL~~Ql~-~~~~~~~~~Ia~~iI~~LD~~GYL~~~-l~eia~~l~~~~~eve~vL~~ 71 (76)
T 2k9l_A 4 VPYQIPYTPSELEELQQNIK-LELEGKEQELALELLNYLNEKGFLSKS-VEEISDVLRCSVEELEKVRQK 71 (76)
T ss_dssp CCSSSSCCHHHHHHHHHHHH-HHCCTTSHHHHHHHHHHCTTSSTTCCC-HHHHHHHHTSCHHHHHHHHHH
T ss_pred hhhhhccCCchHHHHHHHHc-ccCCHHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHcCCCHHHHHHHHHH
Confidence 34445565555666666665 432222333444444445668999875 477999999999999988654
No 6
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=77.94 E-value=4.2 Score=26.97 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=26.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 73 IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 73 IplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
+.+|...=....|.+.+....+|..|||+..+|.
T Consensus 12 ~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 45 (58)
T 1ig7_A 12 LLALERKFRQKQYLSIAERAEFSSSLSLTETQVK 45 (58)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhh
Confidence 3444444455669999999999999999999885
No 7
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=76.47 E-value=4.3 Score=27.24 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 73 IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 73 IplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
+..|...=....|.+.+....+|+.|||+..+|.
T Consensus 13 ~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 46 (60)
T 1jgg_A 13 LGRLEKEFYKENYVSRPRRCELAAQLNLPESTIK 46 (60)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHH
Confidence 4445555555679999999999999999999885
No 8
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=75.83 E-value=4.7 Score=26.81 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 73 IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 73 IplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
+..|...=....|++.+....+|+.|||+..+|.
T Consensus 9 l~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 42 (56)
T 3a03_A 9 VLELERRFLRQKYLASAERAALAKALRMTDAQVK 42 (56)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhh
Confidence 3445555556679999999999999999999885
No 9
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=74.64 E-value=5.4 Score=27.52 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 75 LLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 75 lL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
+|..+=...-|.+.+....+|+.|||+..+|.
T Consensus 21 ~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2da2_A 21 VLQDFFDANAYPKDDEFEQLSNLLNLPTRVIV 52 (70)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhH
Confidence 33333344558899999999999999999885
No 10
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=74.28 E-value=5.2 Score=27.15 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=26.5
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 73 IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 73 IplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
+.+|...=....|++.+....+|..|||+..+|.
T Consensus 15 ~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 48 (63)
T 2h1k_A 15 LLELEKEFLFNKYISRPRRVELAVMLNLTERHIK 48 (63)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhh
Confidence 3444444445668999999999999999999885
No 11
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=74.16 E-value=5.4 Score=26.86 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 73 IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 73 IplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
+.+|...=+..-|.+......+|+.|||+..+|.
T Consensus 15 ~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 48 (61)
T 2hdd_A 15 LARLKREFNENRYLTERRRQQLSSELGLNEAQIK 48 (61)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHH
Confidence 3445444455669999999999999999999885
No 12
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.66 E-value=5.4 Score=27.61 Aligned_cols=26 Identities=12% Similarity=0.172 Sum_probs=22.2
Q ss_pred HHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 81 RQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 81 ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
...-|.+.+....+|+.|||+..+|.
T Consensus 27 ~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2dmu_A 27 QETKYPDVGTREQLARKVHLREEKVE 52 (70)
T ss_dssp HHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HccCCCCHHHHHHHHHHHCCCHHHee
Confidence 33558899999999999999999886
No 13
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=73.32 E-value=6.1 Score=27.39 Aligned_cols=31 Identities=6% Similarity=0.123 Sum_probs=23.9
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 76 LDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 76 L~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
|...=...-|++.+....+|..|||+..+|.
T Consensus 22 Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2cra_A 22 LEREYAANKFITKDKRRKISAATSLSERQIT 52 (70)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHCCCHHHhh
Confidence 3333334558888899999999999999885
No 14
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=72.79 E-value=6 Score=26.53 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 74 PLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 74 plL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
..|...=...-|.+.+....+|+.|||+..+|.
T Consensus 12 ~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 44 (60)
T 3a02_A 12 EELEKAFSRTHYPDVFTREELAMKIGLTEARIQ 44 (60)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 344444444568999999999999999999885
No 15
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=72.78 E-value=6.2 Score=26.63 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 74 PLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 74 plL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
..|...=...-|++......+|..|||+..+|.
T Consensus 16 ~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 48 (62)
T 2vi6_A 16 CALKDRFQKQKYLSLQQMQELSSILNLSYKQVK 48 (62)
T ss_dssp HHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhh
Confidence 344444445568999999999999999999885
No 16
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=72.74 E-value=6.3 Score=27.30 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=22.2
Q ss_pred HHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 81 RQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 81 ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
...-|.+.+....+|..|||+..+|.
T Consensus 27 ~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (70)
T 2e1o_A 27 ETQKYLSPPERKRLAKMLQLSERQVK 52 (70)
T ss_dssp HHCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred HcCCCcCHHHHHHHHHHHCCCHHHhh
Confidence 34558889999999999999999886
No 17
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=71.87 E-value=6.4 Score=26.89 Aligned_cols=34 Identities=6% Similarity=-0.035 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 73 IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 73 IplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
+.+|...=...-|.+.+....+|+.|||+..+|.
T Consensus 15 ~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 48 (66)
T 1bw5_A 15 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 48 (66)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 3344444444568999999999999999999886
No 18
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=70.25 E-value=7 Score=26.97 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 73 IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 73 IplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
+..|...=....|++......+|..|||+..+|.
T Consensus 14 ~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 47 (68)
T 1ftt_A 14 VYELERRFKQQKYLSAPEREHLASMIHLTPTQVK 47 (68)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhH
Confidence 3444444455669999999999999999999885
No 19
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=69.63 E-value=7.1 Score=27.48 Aligned_cols=26 Identities=15% Similarity=-0.023 Sum_probs=21.9
Q ss_pred HHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 81 RQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 81 ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
...-|.+.+....+|+.|||+..+|.
T Consensus 37 ~~~~yp~~~~r~~La~~l~l~~~qV~ 62 (80)
T 2da3_A 37 LLDSNPTRKMLDHIAHEVGLKKRVVQ 62 (80)
T ss_dssp HHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHCcCHHHhH
Confidence 33458888999999999999999875
No 20
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.93 E-value=8.3 Score=27.23 Aligned_cols=26 Identities=12% Similarity=-0.049 Sum_probs=22.2
Q ss_pred HHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 81 RQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 81 ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
...-|.+.+....+|..|||+..+|.
T Consensus 27 ~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (80)
T 2dmq_A 27 AINHNPDAKDLKQLAQKTGLTKRVLQ 52 (80)
T ss_dssp HHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred HHcCCCCHHHHHHHHHHhCCCHHHhh
Confidence 34458999999999999999999885
No 21
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.52 E-value=6.1 Score=27.38 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.1
Q ss_pred cCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 83 HGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 83 ~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
.-|.+.+....+|..|||+..+|.
T Consensus 29 ~~yp~~~~r~~La~~l~l~~~qV~ 52 (70)
T 2djn_A 29 TQYLALPERAELAASLGLTQTQVK 52 (70)
T ss_dssp CSSCCHHHHHHHHHHSSCCHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCHHHHH
Confidence 348888889999999999999985
No 22
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=68.31 E-value=8 Score=27.32 Aligned_cols=31 Identities=26% Similarity=0.171 Sum_probs=24.0
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 76 LDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 76 L~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
|...=....|++......+|..|||+..+|.
T Consensus 28 Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 58 (77)
T 1puf_A 28 LEKEFLFNMYLTRDRRYEVARLLNLTERQVK 58 (77)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHCcCHHHHH
Confidence 3333334568899999999999999999885
No 23
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.29 E-value=8 Score=27.52 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=21.6
Q ss_pred HcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 82 QHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 82 q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
..-|++......||+.|+|+..+|.
T Consensus 38 ~~~yp~~~~r~~LA~~l~L~~~qV~ 62 (80)
T 2dmt_A 38 KQKYLSTPDRIDLAESLGLSQLQVK 62 (80)
T ss_dssp HCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred hcCCCCHHHHHHHHHHhCCCHHHee
Confidence 3458889999999999999999885
No 24
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=68.04 E-value=6 Score=27.13 Aligned_cols=33 Identities=24% Similarity=0.237 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 74 PLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 74 plL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
.+|...=....|.+.+....+|+.|||+..+|.
T Consensus 14 ~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 46 (67)
T 2k40_A 14 EVLENVFRVNCYPGIDILEDLAQKLNLELDRIQ 46 (67)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhh
Confidence 334444344568999999999999999999886
No 25
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=67.48 E-value=5.7 Score=27.41 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=20.7
Q ss_pred HcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 82 QHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 82 q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
..-|.+.+....+|+.|||+..+|.
T Consensus 28 ~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2da1_A 28 INNSPSEEQIKEMADKSGLPQKVIK 52 (70)
T ss_dssp HCSSCCTTHHHHHHHHHCCCHHHHH
T ss_pred HCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 3457777788999999999999885
No 26
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=67.16 E-value=6.7 Score=25.67 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.8
Q ss_pred HcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 82 QHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 82 q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
...|++......+|..|||+..+|.
T Consensus 23 ~~~yp~~~~r~~La~~l~l~~~qV~ 47 (58)
T 3rkq_A 23 QQRYLSAPERDQLASVLKLTSTQVK 47 (58)
T ss_dssp TCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HcCCCCHHHHHHHHHHhCcCHHHHH
Confidence 4468999999999999999998874
No 27
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=67.10 E-value=9.4 Score=27.08 Aligned_cols=31 Identities=29% Similarity=0.236 Sum_probs=24.0
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 76 LDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 76 L~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
|..+=+..-|.+.+....+|+.|+|+..+|.
T Consensus 22 Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (80)
T 2dms_A 22 LEALFAKTRYPDIFMREEVALKINLPESRVQ 52 (80)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHccCCCCHHHHHHHHHHHCcCHHHhh
Confidence 3333334558888999999999999999885
No 28
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=66.41 E-value=10 Score=26.75 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=22.1
Q ss_pred HHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 81 RQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 81 ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
....|++......+|..|||+..+|.
T Consensus 29 ~~~~yp~~~~r~~La~~l~l~~~qV~ 54 (77)
T 1nk2_P 29 RQQRYLSAPEREHLASLIRLTPTQVK 54 (77)
T ss_dssp HHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred hhcCCCCHHHHHHHHHHhCCCHHHHH
Confidence 34458888999999999999999885
No 29
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=66.09 E-value=7.1 Score=26.41 Aligned_cols=25 Identities=12% Similarity=0.020 Sum_probs=22.3
Q ss_pred HcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 82 QHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 82 q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
.+.|.+.+....+|+.|||+..+|.
T Consensus 27 ~~~yp~~~~r~~La~~~~L~~~qV~ 51 (64)
T 1du6_A 27 SNPYPSEEAKEELAKKCGITVSQVS 51 (64)
T ss_dssp TSCCCCHHHHHHHHHHHTSCHHHHH
T ss_pred cCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 3569999999999999999999885
No 30
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=65.89 E-value=14 Score=26.67 Aligned_cols=45 Identities=13% Similarity=0.102 Sum_probs=31.8
Q ss_pred ccCCHHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 46 FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 46 f~ft~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
..||++.+..++....+..- ..-|++.....++|..|+|+..+|-
T Consensus 22 t~ft~~Ql~~Le~~f~~~~~----------------~~~yp~~~~r~~La~~lgL~~~~Vk 66 (80)
T 1wh5_A 22 TKFTAEQKERMLALAERIGW----------------RIQRQDDEVIQRFCQETGVPRQVLK 66 (80)
T ss_dssp CCCCHHHHHHHHHHHHHHTS----------------CCCTTTHHHHHHHHHHSCCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHhccC----------------cCCCcCHHHHHHHHHHhCCCccccc
Confidence 35777777777766555100 0237888888999999999998874
No 31
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=65.28 E-value=11 Score=26.92 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.7
Q ss_pred HcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 82 QHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 82 q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
...|++......||..|||+..+|.
T Consensus 43 ~~~yp~~~~r~~La~~l~l~~~qV~ 67 (84)
T 2kt0_A 43 RQKYLSLQQMQELSNILNLSYKQVK 67 (84)
T ss_dssp HSSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred hCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 4458888889999999999999885
No 32
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=64.71 E-value=10 Score=26.56 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=23.9
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 76 LDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 76 L~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
|...=....|++......+|..|||+..+|.
T Consensus 22 Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (73)
T 2l7z_A 22 LEREYATNKFITKDKRRRISATTNLSERQVT 52 (73)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHTSCSHHHH
T ss_pred HHHHHhhCCCcCHHHHHHHHHHHCCCHHHHH
Confidence 3333334558888889999999999999885
No 33
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=63.73 E-value=11 Score=25.97 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=21.5
Q ss_pred HcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 82 QHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 82 q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
...|++......+|..|||+..+|.
T Consensus 30 ~~~yp~~~~r~~La~~l~l~~~qV~ 54 (75)
T 2m0c_A 30 KTHYPDVYAREQLAMRTDLTEARVQ 54 (75)
T ss_dssp HCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred hcCCCCHHHHHHHHHHhCCCHHHHH
Confidence 3458899999999999999998875
No 34
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=63.69 E-value=12 Score=26.62 Aligned_cols=33 Identities=21% Similarity=0.167 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 74 PLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 74 plL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
.+|...=...-|.+......+|..|||+..+|.
T Consensus 31 ~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 63 (81)
T 1fjl_A 31 DELERAFERTQYPDIYTREELAQRTNLTEARIQ 63 (81)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHH
Confidence 344444444568999999999999999999986
No 35
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.61 E-value=11 Score=26.49 Aligned_cols=33 Identities=6% Similarity=-0.016 Sum_probs=25.4
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHH
Q psy8528 75 LLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107 (240)
Q Consensus 75 lL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vye 107 (240)
+|...-...-|++......+|..|||+..+|.-
T Consensus 21 ~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 53 (75)
T 2da5_A 21 ALESSFAQNPLPLDEELDRLRSETKMTRREIDS 53 (75)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhH
Confidence 333344445689999999999999999998863
No 36
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=62.43 E-value=8.6 Score=26.51 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=22.3
Q ss_pred HHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 81 RQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 81 ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
....|++......+|..|||+..+|.
T Consensus 22 ~~~~yp~~~~r~~La~~l~l~~~qV~ 47 (68)
T 1zq3_P 22 LQGRYLTAPRLADLSAKLALGTAQVK 47 (68)
T ss_dssp TTCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred hcCCCcCHHHHHHHHHHhCcCHHHhh
Confidence 33458999999999999999999885
No 37
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=62.21 E-value=14 Score=26.19 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 72 VIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 72 lIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
-+..|...=....|++......+|..|||+..+|.
T Consensus 15 ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVq 49 (69)
T 2l9r_A 15 QVIELERKFSHQKYLSAPERAHLAKNLKLTETQVK 49 (69)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhhee
Confidence 34555555556679999999999999999999885
No 38
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=61.87 E-value=9.4 Score=27.13 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.9
Q ss_pred cCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 83 HGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 83 ~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
.-|++......+|+.|+|+..+|.
T Consensus 29 ~~yp~~~~r~~LA~~l~l~~~qV~ 52 (80)
T 2cue_A 29 THYPDVFARERLAAKIDLPEARIQ 52 (80)
T ss_dssp CSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCHHHhh
Confidence 348888899999999999999885
No 39
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.58 E-value=9.6 Score=26.82 Aligned_cols=41 Identities=7% Similarity=0.040 Sum_probs=30.2
Q ss_pred cCCHHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHH
Q psy8528 47 EFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107 (240)
Q Consensus 47 ~ft~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vye 107 (240)
.||++.+..++..... .-|.+......+|+.|||+..+|.-
T Consensus 14 ~ft~~Ql~~Le~~F~~--------------------~~yp~~~~r~~La~~~~l~~~qV~~ 54 (76)
T 2dn0_A 14 KKSHEQLSALKGSFCR--------------------NQFPGQSEVEHLTKVTGLSTREVRK 54 (76)
T ss_dssp CCCHHHHHHHHHHHHH--------------------SSSCCSHHHHHHHHHHCCCHHHHHH
T ss_pred cCCHHHHHHHHHHHhc--------------------CCCcCHHHHHHHHHHhCCChHHhhH
Confidence 5666666666555433 4478888899999999999998853
No 40
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=61.57 E-value=17 Score=25.20 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=22.4
Q ss_pred HcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 82 QHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 82 q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
.+-|.+.+....+|..+||+..+|.
T Consensus 22 ~~pyp~~~~r~~La~~~~l~~~qV~ 46 (67)
T 3k2a_A 22 THPYPSEEQKKQLAQDTGLTILQVN 46 (67)
T ss_dssp TSCCCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCCCCCHHHHHHHHHHhCcCHHHhh
Confidence 3569999999999999999999875
No 41
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=61.56 E-value=14 Score=27.05 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=22.2
Q ss_pred HcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 82 QHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 82 q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
++-|++.+..+.||+.+||+..+|-
T Consensus 24 ~~~YPs~~er~~LA~~tgLte~qIk 48 (76)
T 2ecc_A 24 QCQWARREDYQKLEQITGLPRPEII 48 (76)
T ss_dssp HCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred HCCCCCHHHHHHHHHHHCcCHHHhh
Confidence 3459999999999999999999985
No 42
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=61.41 E-value=15 Score=24.40 Aligned_cols=24 Identities=8% Similarity=0.266 Sum_probs=21.6
Q ss_pred cCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 83 HGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 83 ~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
+-|.+.+....+|+.+||+..+|.
T Consensus 23 ~~yp~~~~r~~La~~~gl~~~qV~ 46 (60)
T 1k61_A 23 NPYLDTKGLENLMKNTSLSRIQIK 46 (60)
T ss_dssp SCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCcCHHHHHHHHHHHCcCHHHHH
Confidence 568999999999999999999885
No 43
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=60.82 E-value=8.9 Score=26.48 Aligned_cols=33 Identities=15% Similarity=0.084 Sum_probs=24.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 74 PLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 74 plL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
..|...=....|++......+|..|||+..+|.
T Consensus 15 ~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 47 (68)
T 1ahd_P 15 LELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 47 (68)
T ss_dssp HHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhh
Confidence 334444444568888888999999999999885
No 44
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=59.69 E-value=14 Score=26.36 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 75 LLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 75 lL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
.|...=....|++......+|..|||+..+|.
T Consensus 34 ~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 65 (81)
T 1b8i_A 34 ELEKEFHTNHYLTRRRRIEMAHALSLTERQIK 65 (81)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 34334444568999999999999999999885
No 45
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=59.19 E-value=13 Score=25.87 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=25.7
Q ss_pred HHHHHHHHH-HcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 73 IPLLDLAQR-QHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 73 IplL~~aQ~-q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
+.+|...=. +.-|.+......+|..|||+..+|.
T Consensus 13 ~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~ 47 (72)
T 1uhs_A 13 VEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 47 (72)
T ss_dssp HHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhh
Confidence 334444444 3568999999999999999999885
No 46
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=58.01 E-value=17 Score=25.23 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=21.6
Q ss_pred HcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 82 QHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 82 q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
...|++......+|..|||+..+|.
T Consensus 27 ~~~yp~~~~r~~La~~l~l~~~qV~ 51 (74)
T 2ly9_A 27 KNQFPHDSEIIRLMKITGLTKGEIK 51 (74)
T ss_dssp HCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred HcCCCCHHHHHHHHHHhCcCHHHee
Confidence 3458999999999999999998874
No 47
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=57.58 E-value=14 Score=25.70 Aligned_cols=33 Identities=9% Similarity=0.061 Sum_probs=25.1
Q ss_pred HHHHHHHH-HcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 74 PLLDLAQR-QHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 74 plL~~aQ~-q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
.+|...=. +.-|.+......+|..|||+..+|.
T Consensus 15 ~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~ 48 (73)
T 2hi3_A 15 EILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 48 (73)
T ss_dssp HHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 33433333 3568889999999999999999886
No 48
>3m6z_A Topoisomerase V; helix-hairpin-helix, conformational changes I protein; HET: PO4; 1.40A {Methanopyrus kandleri} PDB: 3m6k_A* 3m7d_A 3m7g_A
Probab=56.89 E-value=6.7 Score=35.22 Aligned_cols=68 Identities=22% Similarity=0.366 Sum_probs=49.7
Q ss_pred cccCCHHhHHHHHHHHHhCCC--CCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHH-----HhhhccCCcc
Q psy8528 45 KFEFTPDNKKRAEAIISIYPV--GHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE-----VATFYTMFIR 117 (240)
Q Consensus 45 ~f~ft~e~~~~i~~il~~Yp~--~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vye-----VATFYtmF~~ 117 (240)
--+.+|+...+++.+|++|.. +.+...++.+|+ .+-|.|-+ +||..||++.++|.+ -...|+.+++
T Consensus 159 vdevppemageferlierydvpidekeerileilr----enpwtphd---eiarrlglsvsevegekdpessgiyslwsr 231 (380)
T 3m6z_A 159 VDEVPPEMAGEFERLIERYDVPIDEKEERILEILR----ENPWTPHD---EIARRLGLSVSEVEGEKDPESSGIYSLWSR 231 (380)
T ss_dssp GGGCCGGGTTTHHHHHHHTTCCCCHHHHHHHHHHH----HCTTCCHH---HHHHHHTCCHHHHHCCSSTTSCSHHHHHHH
T ss_pred cccCChhhhhHHHHHHHHcCCCCChHHHHHHHHHh----cCCCCChH---HHHHHhCCchhhhcCCCCcccccHHHhhhh
Confidence 346788888999999999964 334556666664 58899975 689999999999985 3445555554
Q ss_pred cc
Q psy8528 118 KP 119 (240)
Q Consensus 118 kP 119 (240)
.-
T Consensus 232 vv 233 (380)
T 3m6z_A 232 VV 233 (380)
T ss_dssp HH
T ss_pred he
Confidence 33
No 49
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.88 E-value=13 Score=25.79 Aligned_cols=34 Identities=24% Similarity=0.200 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 73 IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 73 IplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
+..|...=....|.+......+|+.|||+..+|.
T Consensus 15 l~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVq 48 (64)
T 2e19_A 15 LSLLKAYYALNAQPSAEELSKIADSVNLPLDVVK 48 (64)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcC
Confidence 3344443344569999999999999999999885
No 50
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.75 E-value=12 Score=25.99 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=38.5
Q ss_pred ccCCHHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccccCC
Q psy8528 46 FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIG 121 (240)
Q Consensus 46 f~ft~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP~G 121 (240)
-.+|+++.+..++-|..|+.+ ++.|++++ |+---|-+|+.||-+....+.|
T Consensus 10 ~~WT~eE~~~Fe~~l~~yGKd---------f~~I~~~~----------------v~~Kt~~~~v~fYY~wKkt~~~ 60 (63)
T 2yqk_A 10 KCWTEDEVKRFVKGLRQYGKN---------FFRIRKEL----------------LPNKETGELITFYYYWKKTSGP 60 (63)
T ss_dssp CSCCHHHHHHHHHHHHHTCSC---------HHHHHHHS----------------CTTSCHHHHHHHHHHHHCSSCC
T ss_pred CCcCHHHHHHHHHHHHHhCcc---------HHHHHHHH----------------cCCCcHHHHHHHHhcccCCCCC
Confidence 378999999999999999842 45555432 5566778889999887777665
No 51
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=55.20 E-value=16 Score=26.18 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 73 IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 73 IplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
+-.|...=.+.-|++.+....+|..+||+..+|-
T Consensus 16 l~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVk 49 (66)
T 3nau_A 16 IAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIK 49 (66)
T ss_dssp HHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhh
Confidence 3344444444569999999999999999999983
No 52
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=55.16 E-value=13 Score=27.49 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=22.4
Q ss_pred HHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 81 RQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 81 ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
....|++......+|..|||+..+|.
T Consensus 54 ~~~~yp~~~~r~~LA~~l~l~~~qV~ 79 (97)
T 1b72_A 54 HFNKYLSRARRVEIAATLELNETQVK 79 (97)
T ss_dssp TTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred hccCCCCHHHHHHHHHHhCCCHHHhH
Confidence 33568999999999999999999885
No 53
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=54.69 E-value=14 Score=26.62 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=21.6
Q ss_pred HcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 82 QHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 82 q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
...|++......+|+.|||+..+|.
T Consensus 49 ~~~yp~~~~r~~La~~l~l~~~qV~ 73 (88)
T 2r5y_A 49 FNRYLTRRRRIEIAHALSLTERQIK 73 (88)
T ss_dssp TCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred ccCCCCHHHHHHHHHHhCcCHHHhh
Confidence 3458889999999999999999885
No 54
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=54.42 E-value=7.2 Score=30.19 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=32.6
Q ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccc
Q psy8528 68 ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118 (240)
Q Consensus 68 ~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~k 118 (240)
.+..++..-..+=.+.|| ..-.|+.||+..||+. .|||.+|..|
T Consensus 15 ~r~~Il~aA~~lf~~~G~-~~~s~~~Ia~~agvs~------~t~Y~yF~sK 58 (203)
T 3ccy_A 15 IRDTIIERAAAMFARQGY-SETSIGDIARACECSK------SRLYHYFDSK 58 (203)
T ss_dssp HHHHHHHHHHHHHHHTCT-TTSCHHHHHHHTTCCG------GGGTTTCSCH
T ss_pred HHHHHHHHHHHHHHHcCc-ccCCHHHHHHHhCCCc------CeeeeeeCCH
Confidence 456666666555566786 4456788999999987 5999999754
No 55
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=52.98 E-value=15 Score=26.25 Aligned_cols=26 Identities=12% Similarity=0.031 Sum_probs=22.8
Q ss_pred HcCCCCHHHHHHHHHHcCCChhhHHH
Q psy8528 82 QHGWLPISAMHYVADFLNLPKMRVYE 107 (240)
Q Consensus 82 q~G~Lp~~am~~VA~~L~lp~~~Vye 107 (240)
.+-|.+.+....+|+.|||+..+|.-
T Consensus 25 ~~~yp~~~~r~~La~~~~l~~~qV~~ 50 (87)
T 1b72_B 25 SNPYPSEEAKEELAKKCGITVSQVSN 50 (87)
T ss_dssp TSCCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 35699999999999999999998864
No 56
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=52.54 E-value=6.8 Score=29.69 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=33.7
Q ss_pred CCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 67 HERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 67 ~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
..+..|+..-..+=.++|| ..-.++.||+..|++. .|||.+|..|.
T Consensus 11 ~~r~~il~aa~~lf~~~G~-~~~tv~~Ia~~agvs~------~t~Y~~F~sK~ 56 (196)
T 3he0_A 11 DKRDQILAAAEQLIAESGF-QGLSMQKLANEAGVAA------GTIYRYFSDKE 56 (196)
T ss_dssp CCHHHHHHHHHHHHHHHCT-TTCCHHHHHHHHTSCH------HHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHhCc-ccCCHHHHHHHhCCCc------chHHHhcCCHH
Confidence 4566777766666666785 4556788999999986 58888887554
No 57
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=52.38 E-value=5.3 Score=32.32 Aligned_cols=42 Identities=17% Similarity=0.115 Sum_probs=31.3
Q ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccc
Q psy8528 68 ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118 (240)
Q Consensus 68 ~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~k 118 (240)
.+..|+..-..+=.+.| .-.|+.||+.+|+++. |||.+|..|
T Consensus 12 ~r~~Il~aA~~l~~~~G---~~s~~~IA~~aGvs~~------tlY~hF~~K 53 (213)
T 2g7g_A 12 DRERIAEAALELVDRDG---DFRMPDLARHLNVQVS------SIYHHAKGR 53 (213)
T ss_dssp CHHHHHHHHHHHHHHHS---SCCHHHHHHHTTSCHH------HHHTTSCHH
T ss_pred CHHHHHHHHHHHHHHcC---CCCHHHHHHHhCCCHh------HHHHHcCCH
Confidence 45667776666666678 7789999999999875 677777643
No 58
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=52.33 E-value=16 Score=25.25 Aligned_cols=25 Identities=12% Similarity=0.029 Sum_probs=22.1
Q ss_pred cCCCCHHHHHHHHHHcCCChhhHHH
Q psy8528 83 HGWLPISAMHYVADFLNLPKMRVYE 107 (240)
Q Consensus 83 ~G~Lp~~am~~VA~~L~lp~~~Vye 107 (240)
+-|.+.+....+|..+||+..+|.-
T Consensus 26 ~~yP~~~~r~~La~~~~L~~~qV~~ 50 (73)
T 1puf_B 26 NPYPSEEAKEELAKKCGITVSQVSN 50 (73)
T ss_dssp SCCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 4699999999999999999998853
No 59
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=52.31 E-value=6.5 Score=29.74 Aligned_cols=46 Identities=9% Similarity=0.072 Sum_probs=33.6
Q ss_pred CCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 67 HERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 67 ~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
..+..++..-..+=.+.|| ..-.++.||+..|++. .|||.+|..|.
T Consensus 8 ~~r~~Il~aa~~l~~~~G~-~~~t~~~Ia~~agvs~------~t~Y~~F~sK~ 53 (183)
T 1zk8_A 8 LTLQKIVETAAEIADANGV-QEVTLASLAQTLGVRS------PSLYNHVKGLQ 53 (183)
T ss_dssp CCHHHHHHHHHHHHHHHCG-GGCCHHHHHHHHTSCH------HHHTTTCSSHH
T ss_pred HHHHHHHHHHHHHHHhcCc-cccCHHHHHHHcCCCc------hHHHHHcCCHH
Confidence 3566777766666666785 3445788999999986 58999997654
No 60
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.51 E-value=22 Score=25.89 Aligned_cols=26 Identities=4% Similarity=0.022 Sum_probs=22.3
Q ss_pred HHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 81 RQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 81 ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
...-|++......+|..|||+..+|.
T Consensus 33 ~~~~yp~~~~r~~La~~~~l~~~qV~ 58 (89)
T 2dmp_A 33 LKSSFPTQAELDRLRVETKLSRREID 58 (89)
T ss_dssp HHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred ccCCCCCHHHHHHHHHHhCCCHHhcc
Confidence 34558899999999999999999885
No 61
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=50.65 E-value=27 Score=24.13 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.5
Q ss_pred cCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 83 HGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 83 ~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
+-|.+.+....+|..+||+..+|.
T Consensus 32 ~~yp~~~~r~~La~~~~L~~~qV~ 55 (73)
T 1x2n_A 32 HPYPTEDEKKQIAAQTNLTLLQVN 55 (73)
T ss_dssp SCCCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHCcCHHHHH
Confidence 458999999999999999999885
No 62
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=50.42 E-value=21 Score=26.20 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=30.8
Q ss_pred ccCCHHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 46 FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 46 f~ft~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
..||++....++..... .-|++......+|..|||+..+|.
T Consensus 22 t~ft~~Ql~~Le~~F~~--------------------~~yp~~~~r~~LA~~l~L~~~qV~ 62 (93)
T 3a01_A 22 TSFTRIQVAELEKRFHK--------------------QKYLASAERAALARGLKMTDAQVK 62 (93)
T ss_dssp CCCCHHHHHHHHHHHHH--------------------CSCCCHHHHHHHHHTTTCCHHHHH
T ss_pred cCCCHHHHHHHHHHHHc--------------------CCCcCHHHHHHHHHHhCCChhhcc
Confidence 45677666655554443 358999999999999999999885
No 63
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=50.30 E-value=7.6 Score=29.96 Aligned_cols=44 Identities=9% Similarity=0.221 Sum_probs=31.4
Q ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccc
Q psy8528 68 ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118 (240)
Q Consensus 68 ~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~k 118 (240)
.+..++.....+=.+.|| ..-.|+.||+..||+. .|||.+|..|
T Consensus 14 ~r~~Il~aa~~lf~~~G~-~~~tv~~Ia~~agvs~------~t~Y~~F~sK 57 (195)
T 2iu5_A 14 TQKIIAKAFKDLMQSNAY-HQISVSDIMQTAKIRR------QTFYNYFQNQ 57 (195)
T ss_dssp HHHHHHHHHHHHHHHSCG-GGCCHHHHHHHHTSCG------GGGGGTCSSH
T ss_pred HHHHHHHHHHHHHHhCCC-CeeCHHHHHHHhCCCH------HHHHHHcCCH
Confidence 456666666666666785 3345788999999986 5888888654
No 64
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=49.63 E-value=6.6 Score=27.05 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=19.9
Q ss_pred cCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 83 HGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 83 ~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
..|.+.+....+|..|||+..+|.
T Consensus 25 ~~yp~~~~r~~La~~l~l~~~qV~ 48 (68)
T 1yz8_P 25 NRYPDMSTREEIAVWTNLTEARVR 48 (68)
T ss_dssp CSSCCTTTTTHHHHHTTSCHHHHH
T ss_pred cCCCCHHHHHHHHHHHCcCHHHHH
Confidence 457777778899999999999875
No 65
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=49.39 E-value=20 Score=26.26 Aligned_cols=33 Identities=12% Similarity=0.254 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHcC---------------CChhhHHH
Q psy8528 75 LLDLAQRQHGWLPISAMHYVADFLN---------------LPKMRVYE 107 (240)
Q Consensus 75 lL~~aQ~q~G~Lp~~am~~VA~~L~---------------lp~~~Vye 107 (240)
+|...=+..-|.+.+..+.||+.|+ |+..+|+-
T Consensus 21 ~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~ 68 (95)
T 2cuf_A 21 VMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 68 (95)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHH
Confidence 3433334456899999999999999 99988863
No 66
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=49.17 E-value=6.8 Score=30.11 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=29.0
Q ss_pred CCcccHHHH-HHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 67 HERAAVIPL-LDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 67 ~~rsalIpl-L~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
..+..++.. +..+-.++|| ..-.|+.||+..||+. .|||.+|..|-
T Consensus 24 ~~r~~Il~aA~~~lf~~~G~-~~~t~~~Ia~~agvs~------~t~Y~~F~sK~ 70 (212)
T 3nxc_A 24 NRREEILQSLALMLESSDGS-QRITTAKLAASVGVSE------AALYRHFPSKT 70 (212)
T ss_dssp TTHHHHHHHHHHHHHC-------CCHHHHHHHTTSCH------HHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHhcCCh-hhcCHHHHHHHhCCCh------hHHHHHCCCHH
Confidence 356667766 4445456675 3445788999999986 58899998654
No 67
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=49.13 E-value=6.2 Score=29.59 Aligned_cols=44 Identities=16% Similarity=0.291 Sum_probs=29.5
Q ss_pred cccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 69 RAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 69 rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
+..++.....+=.+.|| ..-.|+.||+..||+. .|||.+|..+-
T Consensus 14 r~~Il~aa~~l~~~~G~-~~~tv~~Ia~~agvs~------~t~Y~~F~sK~ 57 (177)
T 3kkc_A 14 KVAIYNAFISLLQENDY-SKITVQDVIGLANVGR------STFYSHYESKE 57 (177)
T ss_dssp HHHHHHHHHHHTTTSCT-TTCCHHHHHHHHCCCH------HHHTTTCSSTH
T ss_pred HHHHHHHHHHHHHhCCh-hHhhHHHHHHHhCCcH------hhHHHHcCCHH
Confidence 34455544444455674 3455788999999986 58899997653
No 68
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=48.87 E-value=17 Score=25.63 Aligned_cols=34 Identities=6% Similarity=-0.008 Sum_probs=27.6
Q ss_pred HHHHHHHH-HHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 73 IPLLDLAQ-RQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 73 IplL~~aQ-~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
+.+|...= ...-|.+......+|..|||+..+|.
T Consensus 20 l~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVq 54 (72)
T 2cqx_A 20 NDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQ 54 (72)
T ss_dssp TTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcc
Confidence 45555555 55679999999999999999999985
No 69
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=48.05 E-value=29 Score=25.77 Aligned_cols=26 Identities=8% Similarity=0.033 Sum_probs=23.0
Q ss_pred HHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 81 RQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 81 ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
.+.-|++.+....+|..|||+..+|-
T Consensus 31 ~~~~yp~~~~r~~LA~~lgLte~qVk 56 (89)
T 2ecb_A 31 LNSSVLTDEELNRLRAQTKLTRREID 56 (89)
T ss_dssp HHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred HhcCCCCHHHHHHHHHHhCcChHHCe
Confidence 34569999999999999999999985
No 70
>3vdj_A Circumsporozoite (CS) protein; TSR, ATSR, cell invasion; 1.70A {Plasmodium falciparum} PDB: 3vdk_A 3vdl_A
Probab=47.42 E-value=15 Score=27.35 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=38.5
Q ss_pred CHHhHHHHHHHHhcCCCCCCCCCCCCCCCcCcC-CCccccccCCCCCC
Q psy8528 167 EPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQS-GRFCQAREAYHDMT 213 (240)
Q Consensus 167 tpe~i~~IL~~lk~g~~p~~gp~g~~~~~~~~~-gr~~~~~e~~~g~t 213 (240)
+.+.|++-|++++.--.-.+++|-.+-|-|-|. -|.|..-.|..|.+
T Consensus 7 ~~~~i~~~l~ki~~~vtS~WS~CSvTCG~Gvq~R~R~C~nP~P~~~~~ 54 (77)
T 3vdj_A 7 SDKHIKEYLNKIQNSLSTEWSPCSVTCGNGIQVRIKPGSANKPKDELD 54 (77)
T ss_dssp CHHHHHHHHHHHTTTCSSSCCCCSCSSSEEEEEEECGGGTTSCGGGCC
T ss_pred cHHHHHHHHHHHhccccccCCCCCCcCCCCeEEeeecCCCCCCcccCc
Confidence 568888999999877777778888888989885 78998888888765
No 71
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=47.32 E-value=6 Score=30.38 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=31.5
Q ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 68 ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 68 ~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
.+..|+..-..+=.+.|| ..-.|+.||+..||+. .|||.+|..|-
T Consensus 8 ~r~~Il~aA~~l~~~~G~-~~~t~~~Ia~~agvs~------~t~Y~~F~sK~ 52 (195)
T 2dg7_A 8 AEQRLKRAALELYSEHGY-DNVTVTDIAERAGLTR------RSYFRYFPDKR 52 (195)
T ss_dssp HHHHHHHHHHHHHHHSCG-GGCCHHHHHHHTTCCH------HHHHHHCSSTT
T ss_pred HHHHHHHHHHHHHHhcCc-cccCHHHHHHHhCCCH------HHHHHHcCCHH
Confidence 455666666555566784 4445788999999986 57888887654
No 72
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=46.72 E-value=13 Score=29.66 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=33.7
Q ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 68 ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 68 ~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
.+..||..-..+=.+.|| ..-.|+.||+..||+. .|||.+|..|-
T Consensus 31 ~r~~Il~aA~~lf~~~G~-~~~t~~~IA~~Agvs~------~t~Y~~F~sKe 75 (230)
T 2iai_A 31 TPETLLSVAVQVFIERGY-DGTSMEHLSKAAGISK------SSIYHHVTGKE 75 (230)
T ss_dssp CCSCHHHHHHHHHHHHCT-TTCCHHHHHHHHTSCH------HHHTTTCSSHH
T ss_pred HHHHHHHHHHHHHHHcCc-cccCHHHHHHHHCCCh------hHHHHhCCCHH
Confidence 567777776666667786 3456788999999986 58899997654
No 73
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=46.70 E-value=32 Score=24.54 Aligned_cols=25 Identities=8% Similarity=0.267 Sum_probs=22.1
Q ss_pred cCCCCHHHHHHHHHHcCCChhhHHH
Q psy8528 83 HGWLPISAMHYVADFLNLPKMRVYE 107 (240)
Q Consensus 83 ~G~Lp~~am~~VA~~L~lp~~~Vye 107 (240)
+-|.+.+....+|..+||+..+|.-
T Consensus 27 ~~yP~~~~r~~La~~~gLt~~qV~~ 51 (83)
T 1le8_B 27 NPYLDTKGLENLMKNTSLSRIQIKN 51 (83)
T ss_dssp SCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCcCHHHHHHHHHHHCCCHHHccc
Confidence 4599999999999999999998863
No 74
>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa} PDB: 3ale_A
Probab=46.63 E-value=4 Score=37.18 Aligned_cols=43 Identities=12% Similarity=0.284 Sum_probs=33.0
Q ss_pred cCHHHHHHHHHHHcCc----e------Ee-ecCCCHHhHHHHHHHHhcCCCCCCC
Q psy8528 144 RNSDAILEVIKKKCNM----M------LE-RQDLEPKDMEQIIDDLKAGKKPAPG 187 (240)
Q Consensus 144 rGs~~Il~~l~~~LgI----m------v~-y~~Ltpe~i~~IL~~lk~g~~p~~g 187 (240)
.|...|++.+.++||+ + +. |+++...++--.|+++.++ ..++|
T Consensus 301 q~n~~il~~v~~~Lgl~~ek~~~s~~~l~~~GNtssAsip~~L~~~~~~-~~~~G 354 (387)
T 3oit_A 301 PGSSTIMDQVDAALGLEPGKLAASRRVLSDYGNMSGATVIFALDELRRQ-RKEAA 354 (387)
T ss_dssp CCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHCBCGGGHHHHHHHHHHHC------
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchHHhHHHHHHHHHHHh-hhccC
Confidence 6778999999999999 1 33 9999999999999988776 56666
No 75
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=45.24 E-value=32 Score=25.23 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=25.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 74 PLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 74 plL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
.+|...=...-|++......+|..|||+..+|.
T Consensus 38 ~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 70 (96)
T 3nar_A 38 HMLKSAFVRTQWPSPEEYDKLAKESGLARTDIV 70 (96)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHee
Confidence 334333344569999999999999999998875
No 76
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=44.83 E-value=30 Score=25.69 Aligned_cols=77 Identities=13% Similarity=0.029 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCCChhhHHHHhhhccCCccccCCcccccccccEEEEecCC--hhhhhcCHHHHHHHHHHHcCc-----eE
Q psy8528 89 SAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTT--TPCWLRNSDAILEVIKKKCNM-----ML 161 (240)
Q Consensus 89 ~am~~VA~~L~lp~~~VyeVATFYtmF~~kP~G~~~~~~~~K~~I~VC~~--t~C~lrGs~~Il~~l~~~LgI-----mv 161 (240)
++-+.+|+.||.|...| .++|-.--.+-.-|..+|-+ --+|..=.+ ..-.-+=+..|.+.|+++||| .|
T Consensus 22 ~ls~~~a~~lgKPe~~v--~V~~~~~~~m~fgGs~~p~a--~v~i~~ig~~~~e~~~~l~~~i~~~l~~~Lgi~~~riyI 97 (114)
T 4dh4_A 22 DAEKAVADALGKPLSYV--MVGYSQTGQMRFGGSSDPCA--FIRVASIGGITSSTNCKIAAALSAACERHLGVPKNRIYT 97 (114)
T ss_dssp HHHHHHHHHHTCCGGGC--EEEEEECSCCCBTTBCSCCE--EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEE
T ss_pred HHHHHHHHHHCCChHHE--EEEEeCCceEEECCcCCCeE--EEEEEEEcCCCHHHHHHHHHHHHHHHHHHhCcCcccEEE
Confidence 34567899999999966 45554333333334332221 113333222 222223357888889999999 55
Q ss_pred eecCCCHH
Q psy8528 162 ERQDLEPK 169 (240)
Q Consensus 162 ~y~~Ltpe 169 (240)
.|.++.++
T Consensus 98 ~f~d~~~~ 105 (114)
T 4dh4_A 98 TFTNKSPS 105 (114)
T ss_dssp EEEEECGG
T ss_pred EEEeCCHH
Confidence 56666554
No 77
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=44.71 E-value=12 Score=26.10 Aligned_cols=60 Identities=10% Similarity=0.089 Sum_probs=31.2
Q ss_pred ccCCCCCCCCccccCCHHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHH
Q psy8528 34 HRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEV 108 (240)
Q Consensus 34 h~~t~~~n~~~~f~ft~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeV 108 (240)
|..++.......-.++++..++++++...|..++ .|+|+.+-+..+-..+|++..+|..+
T Consensus 7 ~~~~~~~~~~~~~~l~~~~~~~l~~~F~~~D~d~---------------~G~I~~~El~~~l~~~g~~~~~~~~~ 66 (91)
T 2pmy_A 7 HSSGRENLYFQGADGDGEELARLRSVFAACDANR---------------SGRLEREEFRALCTELRVRPADAEAV 66 (91)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHCTTC---------------SSSEEHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCCCCccHHHHhccCCHHHHHHHHHHHHHHCCCC---------------CCCCcHHHHHHHHHHcCcCHHHHHHH
Confidence 4444444445556788899999999999886421 35555555555555555555444443
No 78
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=44.07 E-value=10 Score=28.71 Aligned_cols=44 Identities=20% Similarity=0.232 Sum_probs=30.1
Q ss_pred cccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 69 RAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 69 rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
+..++..-..+=.++|| ..-.|+.||+..|++. .|||.+|..|-
T Consensus 9 r~~Il~aa~~l~~~~G~-~~~t~~~IA~~agvs~------~t~Y~~F~sK~ 52 (199)
T 3qbm_A 9 RERVVAQAAALFNVSGY-AGTAISDIMAATGLEK------GGIYRHFESKE 52 (199)
T ss_dssp HHHHHHHHHHHHHHHCS-TTCCHHHHHHHHTCCH------HHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHhCc-CcCCHHHHHHHhCCCc------cHHHHhCCCHH
Confidence 44555555555556784 3445788999999986 58889997543
No 79
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=43.91 E-value=11 Score=28.76 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=31.4
Q ss_pred cccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 69 RAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 69 rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
+..|+.....+=.++|| ..-.|+.||+..|++. .|||.+|..|-
T Consensus 18 r~~Il~aa~~l~~~~G~-~~~t~~~Ia~~agvs~------~t~Y~~F~sK~ 61 (211)
T 3him_A 18 AARIRAAAIEVFAAKGY-GATTTREIAASLDMSP------GAVYPHYKTKE 61 (211)
T ss_dssp HHHHHHHHHHHHHHHCS-TTCCHHHHHHHTTCCT------TSSTTTCSSHH
T ss_pred HHHHHHHHHHHHHHcCC-CcCCHHHHHHHhCCCc------ChhhhcCCCHH
Confidence 45566655555566786 3456788999999976 68999997554
No 80
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=43.76 E-value=60 Score=26.32 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=53.5
Q ss_pred cHHHHHHHHHHHc--CCCCHHHHHHHHHH-cCCChhhHHHHhhhccCCccccCCcccccccccEEEEecCChhhhhcCHH
Q psy8528 71 AVIPLLDLAQRQH--GWLPISAMHYVADF-LNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSD 147 (240)
Q Consensus 71 alIplL~~aQ~q~--G~Lp~~am~~VA~~-L~lp~~~VyeVATFYtmF~~kP~G~~~~~~~~K~~I~VC~~t~C~lrGs~ 147 (240)
.+...|...|... .|.+.+.+..+|+. +|++..++.....= +.. .+
T Consensus 99 ~~~~aLf~~~~~~~~~~~~~~~L~~~a~~~~Gld~~~~~~~l~s-------~~~------------------------~~ 147 (202)
T 3gha_A 99 DFHEKLFEKQPDTEQEWVTPGLLGDLAKSTTKIKPETLKENLDK-------ETF------------------------AS 147 (202)
T ss_dssp HHHHHHHHHCCSSSSCCCCHHHHHHHHHHHSSSCHHHHHHHHHH-------TTT------------------------HH
T ss_pred HHHHHHHHhCccccccccCHHHHHHHHHHhcCCCHHHHHHHHhC-------hHH------------------------HH
Confidence 3444555554433 38999999999999 99999887765431 111 12
Q ss_pred HHHH--HHHHHcCc------eEe----ecCCCHHhHHHHHHHHhcCC
Q psy8528 148 AILE--VIKKKCNM------MLE----RQDLEPKDMEQIIDDLKAGK 182 (240)
Q Consensus 148 ~Il~--~l~~~LgI------mv~----y~~Ltpe~i~~IL~~lk~g~ 182 (240)
.|.+ .+-+.+|| +|| .+..+++.+.++|++..++|
T Consensus 148 ~v~~~~~~a~~~gV~gtPtfvvnG~~~~G~~~~e~l~~~i~~~~~~~ 194 (202)
T 3gha_A 148 QVEKDSDLNQKMNIQATPTIYVNDKVIKNFADYDEIKETIEKELKGK 194 (202)
T ss_dssp HHHHHHHHHHHTTCCSSCEEEETTEECSCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCcCCEEEECCEEecCCCCHHHHHHHHHHHHHhh
Confidence 2222 23346887 667 45688999999999887765
No 81
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=43.67 E-value=38 Score=24.26 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=33.2
Q ss_pred ccCCHHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 46 FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 46 f~ft~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
-.|+++....++..+...- .+-|.+.+....+|+.+||+..+|.
T Consensus 32 ~~ft~~q~~~Le~~f~~~~-----------------~~~yP~~~~r~~La~~~gL~~~qV~ 75 (87)
T 1mnm_C 32 HRFTKENVRILESWFAKNI-----------------ENPYLDTKGLENLMKNTSLSRIQIK 75 (87)
T ss_dssp CCCCHHHHHHHHHHHHHTT-----------------SSCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhC-----------------CCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 3577777777776665521 0348999999999999999999885
No 82
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=43.57 E-value=12 Score=34.71 Aligned_cols=69 Identities=22% Similarity=0.375 Sum_probs=50.1
Q ss_pred cccCCHHhHHHHHHHHHhCCC--CCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHH-----HhhhccCCcc
Q psy8528 45 KFEFTPDNKKRAEAIISIYPV--GHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE-----VATFYTMFIR 117 (240)
Q Consensus 45 ~f~ft~e~~~~i~~il~~Yp~--~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vye-----VATFYtmF~~ 117 (240)
.-+.+|+...+++.+|.+|.. +.+...++.+|+ .+-|.|-+ +||..||++.++|.+ -...|+.+++
T Consensus 159 vdevppemageferlierydvpidekeerileilr----enpwtphd---eiarrlglsvsevegekdpessgiyslwsr 231 (519)
T 2csb_A 159 VDEVPPEMAGEFERLIERYDVPIDEKEERILEILR----ENPWTPHD---EIARRLGLSVSEVEGEKDPESSGIYSLWSR 231 (519)
T ss_dssp GGGCCGGGTTTTHHHHHHTTCCCCHHHHHHHHHHH----HCTTCCHH---HHHHHHTCCHHHHHCCSSSSSCSHHHHHHH
T ss_pred cccCChhhhhHHHHHHHHcCCCCChHHHHHHHHHh----cCCCCChH---HHHHHhCCchhhhcCCCCcccccHHHHhhh
Confidence 346778888899999999964 334556666664 58899975 689999999999985 3445665554
Q ss_pred ccC
Q psy8528 118 KPI 120 (240)
Q Consensus 118 kP~ 120 (240)
.-+
T Consensus 232 vvv 234 (519)
T 2csb_A 232 VVV 234 (519)
T ss_dssp HHT
T ss_pred heE
Confidence 443
No 83
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=43.42 E-value=13 Score=30.59 Aligned_cols=44 Identities=14% Similarity=-0.007 Sum_probs=32.5
Q ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccc
Q psy8528 68 ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118 (240)
Q Consensus 68 ~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~k 118 (240)
.+..||..-..+=.+.|| ..-.|+.||+.+|++++ |||.+|..|
T Consensus 17 ~r~~Il~aA~~l~~~~G~-~~~s~~~IA~~aGvs~~------tlY~hF~~K 60 (237)
T 2hxo_A 17 SRERIVGAAVELLDTVGE-RGLTFRALAERLATGPG------AIYWHITGK 60 (237)
T ss_dssp CHHHHHHHHHHHHHHTTT-TTCCHHHHHHHHTSCGG------GGGGTCCCH
T ss_pred CHHHHHHHHHHHHHhcCc-ccCCHHHHHHHHCCChH------HHHHhcCCH
Confidence 456677766666677885 44568889999999875 778888654
No 84
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=43.34 E-value=17 Score=21.51 Aligned_cols=23 Identities=4% Similarity=-0.057 Sum_probs=19.3
Q ss_pred HHHHHHHcCCChhhHHHHhhhcc
Q psy8528 91 MHYVADFLNLPKMRVYEVATFYT 113 (240)
Q Consensus 91 m~~VA~~L~lp~~~VyeVATFYt 113 (240)
..+||+.||++..-|+-...-|.
T Consensus 24 ~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 24 LHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCST
T ss_pred HHHHHHHHCcCHHHHHHHHhhHH
Confidence 67899999999999998776553
No 85
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=43.28 E-value=18 Score=25.74 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=29.7
Q ss_pred ccCCHHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHH
Q psy8528 46 FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEV 108 (240)
Q Consensus 46 f~ft~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeV 108 (240)
+.++++..++++++...|..+ ..|+|+.+-+..+-..++++..++.++
T Consensus 2 w~ls~~~~~~~~~~F~~~D~d---------------~dG~I~~~el~~~l~~~g~~~~~~~~i 49 (95)
T 1c07_A 2 WVVSPAEKAKYDEIFLKTDKD---------------MDGFVSGLEVREIFLKTGLPSTLLAHI 49 (95)
T ss_dssp CSSCSHHHHHHHHHHHHHCTT---------------CSSEECHHHHHHHHHTTTCCHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCC---------------CCCcEeHHHHHHHHHHcCCCHHHHHHH
Confidence 457888888899988888632 135555555555555555555444443
No 86
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=43.05 E-value=8.6 Score=29.58 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=30.6
Q ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 68 ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 68 ~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
.+..|+.....+=.+.|| ..-.|+.||+..||+. .|||.+|..|-
T Consensus 18 ~r~~Il~aa~~l~~~~G~-~~~ti~~Ia~~agvs~------~t~Y~~F~sK~ 62 (207)
T 2rae_A 18 TQDRISTVGIELFTEQGF-DATSVDEVAEASGIAR------RTLFRYFPSKN 62 (207)
T ss_dssp HHHHHHHHHHHHHHHHCT-TTSCHHHHHHHTTSCH------HHHHHHCSSTT
T ss_pred HHHHHHHHHHHHHHHcCc-ccCCHHHHHHHhCCCc------chHhhhCCCHH
Confidence 344555555555556786 4455788999999986 57788886654
No 87
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=43.03 E-value=11 Score=28.31 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=31.9
Q ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 68 ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 68 ~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
.+..++..-..+=.++|| ..-.|+.||+..|++. .|||.+|..|-
T Consensus 11 ~r~~Il~aa~~lf~~~G~-~~~t~~~IA~~agvs~------~tlY~~F~sK~ 55 (197)
T 3rd3_A 11 TRQHLLDTGYRIMAVKGF-SGVGLNEILQSAGVPK------GSFYHYFKSKE 55 (197)
T ss_dssp HHHHHHHHHHHHHHHHCS-TTCCHHHHHHHHTCCH------HHHTTTCSCHH
T ss_pred HHHHHHHHHHHHHHHCCc-ccCCHHHHHHHhCCCh------hhHHHHcCCHH
Confidence 455666666556666785 3345778999999976 68999998654
No 88
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=43.00 E-value=36 Score=29.93 Aligned_cols=57 Identities=16% Similarity=0.270 Sum_probs=41.6
Q ss_pred hhccCCccccCCcccccccccEEEEecCChhhhhcCHHHHHHHHHHHcCceEe-ecCCCHHhHHHHHHHHhcC
Q psy8528 110 TFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLE-RQDLEPKDMEQIIDDLKAG 181 (240)
Q Consensus 110 TFYtmF~~kP~G~~~~~~~~K~~I~VC~~t~C~lrGs~~Il~~l~~~LgImv~-y~~Ltpe~i~~IL~~lk~g 181 (240)
..|.| +.+|+| .-.|--+.+ ..++.|.+.++ .||--|. |.|||.++|.+.|.++.+.
T Consensus 34 ~~Y~m-~~~~rG--------~~LIinn~~-----~D~~~L~~~f~-~LgF~V~~~~dlt~~em~~~l~~~~~~ 91 (272)
T 3h11_A 34 ERYKM-KSKPLG--------ICLIIDCIG-----NETELLRDTFT-SLGYEVQKFLHLSMHGISQILGQFACM 91 (272)
T ss_dssp CBCCC-CCSSSE--------EEEEEESSC-----CCCSHHHHHHH-HHTEEEEEEESCBHHHHHHHHHHHHTC
T ss_pred ccCCC-CCCcce--------EEEEECCch-----HHHHHHHHHHH-HCCCEEEEeeCCCHHHHHHHHHHHHhc
Confidence 46888 557999 545544443 56777666665 5787555 9999999999999998753
No 89
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.23 E-value=11 Score=26.66 Aligned_cols=44 Identities=16% Similarity=0.008 Sum_probs=31.3
Q ss_pred cCCHHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 47 EFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 47 ~ft~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
.|+++.+..++........ .+.|.+.+....+|..|||+..+|.
T Consensus 14 ~ft~~Q~~~Le~~F~~~~~----------------~~~yp~~~~r~~La~~lgL~~~qV~ 57 (80)
T 2da4_A 14 QFSDRDLATLKKYWDNGMT----------------SLGSVCREKIEAVATELNVDCEIVR 57 (80)
T ss_dssp CCCHHHHHHHHHHHTTTTT----------------CCSHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCC----------------CCCCcCHHHHHHHHHHhCCCHHHhh
Confidence 4677777666666544310 0147788888999999999999885
No 90
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=42.17 E-value=6.6 Score=31.47 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=29.1
Q ss_pred cccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccc
Q psy8528 69 RAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118 (240)
Q Consensus 69 rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~k 118 (240)
+..|+.....+=.++|| ..-.++.||+..|++.. |||.+|..|
T Consensus 15 r~~Il~AA~~l~~~~G~-~~~tv~~IA~~agvs~~------t~Y~~F~sK 57 (231)
T 2qib_A 15 RQQLIGVALDLFSRRSP-DEVSIDEIASAAGISRP------LVYHYFPGK 57 (231)
T ss_dssp HHHHHHHHHHHHHHSCG-GGCCHHHHHHHHTSCHH------HHHHHCSSH
T ss_pred HHHHHHHHHHHHHHcCc-hhcCHHHHHHHhCCCHH------HHHHHCCCH
Confidence 34556555555566786 45567889999999875 666667643
No 91
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=42.09 E-value=13 Score=30.91 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=32.0
Q ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccc
Q psy8528 68 ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118 (240)
Q Consensus 68 ~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~k 118 (240)
.+..||..-..+=.+.|| ..-.|+.||+.+|++.. |||.+|..|
T Consensus 20 tr~~Il~AA~~l~~e~G~-~~~S~~~IA~~aGvs~~------tlY~hF~sK 63 (243)
T 2g7l_A 20 SRRWIVDTAVALMRAEGL-EKVTMRRLAQELDTGPA------SLYVYVANT 63 (243)
T ss_dssp CHHHHHHHHHHHHHHHCS-SSCCHHHHHHHTTSCHH------HHTTTCCSH
T ss_pred CHHHHHHHHHHHHHhcCc-hhcCHHHHHHHHCCChh------HHHHHcCCH
Confidence 456677766666667786 44568889999999875 677777654
No 92
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=41.62 E-value=15 Score=28.14 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=31.0
Q ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 68 ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 68 ~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
.|..||..=..+=.++|| ..-.|+.||+..||+. .|||.+|..|-
T Consensus 8 tRe~Il~aA~~lf~~~G~-~~~s~~~IA~~aGvs~------~tlY~~F~sKe 52 (178)
T 4hku_A 8 SQEIILNMAEKIIYEKGM-EKTTLYDIASNLNVTH------AALYKHYRNKE 52 (178)
T ss_dssp CHHHHHHHHHHHHHHHCG-GGCCHHHHHHHTTSCG------GGGGGTCSSHH
T ss_pred HHHHHHHHHHHHHHHhCc-ccccHHHHHHHhCcCH------hHHHHHCCCHH
Confidence 345555544444455686 4455788999999987 58999997653
No 93
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=41.62 E-value=46 Score=25.01 Aligned_cols=46 Identities=4% Similarity=0.031 Sum_probs=34.7
Q ss_pred cccCCHHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHH
Q psy8528 45 KFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107 (240)
Q Consensus 45 ~f~ft~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vye 107 (240)
+.+|+++..+.+++.+...- .+-|.+.+.-..+|+.+||+..+|--
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~-----------------~npYPs~~ek~~LA~~tgLt~~QV~~ 54 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHR-----------------YNAYPSEQEKALLSQQTHLSTLQVCN 54 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTS-----------------GGGSCCHHHHHHHHHHSSSCHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhc-----------------cCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 34677777776666665432 24699999999999999999999864
No 94
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=41.52 E-value=40 Score=23.69 Aligned_cols=37 Identities=8% Similarity=-0.047 Sum_probs=28.4
Q ss_pred ccHHHHHHHHH-HHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 70 AAVIPLLDLAQ-RQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 70 salIplL~~aQ-~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
..=++.|...= ...-|++......+|..|||+..+|.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVk 46 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQ 46 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHH
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHH
Confidence 33455555544 34569999999999999999999986
No 95
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=41.47 E-value=11 Score=28.56 Aligned_cols=44 Identities=16% Similarity=0.278 Sum_probs=29.7
Q ss_pred cccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 69 RAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 69 rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
+..+|..-..+=.++||= .-.|+.||+..|++. .|||.+|..|.
T Consensus 13 r~~Il~aA~~lf~~~G~~-~~s~~~Ia~~agvs~------~t~Y~~F~sK~ 56 (203)
T 3b81_A 13 RTELANKIWDIFIANGYE-NTTLAFIINKLGISK------GALYHYFSSKE 56 (203)
T ss_dssp HHHHHHHHHHHHHHHCST-TCCHHHHHHHHTCCH------HHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHcCcc-cCcHHHHHHHhCCCc------hhHHHHcCCHH
Confidence 445555555555567863 345788999999986 47778886543
No 96
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=41.40 E-value=8.1 Score=29.15 Aligned_cols=45 Identities=11% Similarity=0.070 Sum_probs=27.3
Q ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 68 ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 68 ~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
.+..|+..-..+=.++|| ..-.|+.||+..|++. .|||.+|..|-
T Consensus 13 ~r~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~------~t~Y~~F~sK~ 57 (199)
T 3on2_A 13 LRRVLLARAESTLEKDGV-DGLSLRQLAREAGVSH------AAPSKHFRDRQ 57 (199)
T ss_dssp HHHHHHHHHHHHHHHHCG-GGCCHHHHHHHTC-----------CCCSSSSHH
T ss_pred HHHHHHHHHHHHHHhcCh-hhhhHHHHHHHhCCCh------HHHHHHhCCHH
Confidence 345566555555556685 3345778999999975 68999997654
No 97
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=41.15 E-value=9.4 Score=28.68 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=30.9
Q ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 68 ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 68 ~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
.+..|+.....+=.++|| ..-.++.||+..|++. .|||.+|..+.
T Consensus 11 ~r~~Il~aa~~l~~~~G~-~~~ti~~Ia~~agvs~------~t~Y~~F~sK~ 55 (196)
T 3col_A 11 KQVKIQDAVAAIILAEGP-AGVSTTKVAKRVGIAQ------SNVYLYFKNKQ 55 (196)
T ss_dssp HHHHHHHHHHHHHHHHCG-GGCCHHHHHHHHTSCH------HHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHhcCc-ccCCHHHHHHHhCCcH------HHHHHHhCCHH
Confidence 455566655555556685 3344678999999986 58888887654
No 98
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=40.71 E-value=9 Score=29.45 Aligned_cols=44 Identities=23% Similarity=0.402 Sum_probs=32.1
Q ss_pred cccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 69 RAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 69 rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
+..|+.....+=.++|| ..-.++.||+..||+. .|||.+|..|.
T Consensus 33 r~~Il~aa~~l~~~~G~-~~~tv~~Ia~~agvs~------~t~Y~~F~sK~ 76 (218)
T 3dcf_A 33 RTQIIKVATELFREKGY-YATSLDDIADRIGFTK------PAIYYYFKSKE 76 (218)
T ss_dssp HHHHHHHHHHHHHHTCT-TTCCHHHHHHHHTCCH------HHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHcCc-ccCcHHHHHHHhCCCH------HHHHHHcCCHH
Confidence 56666666666666786 3445788999999986 58888998654
No 99
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=40.53 E-value=45 Score=23.83 Aligned_cols=25 Identities=8% Similarity=0.187 Sum_probs=22.2
Q ss_pred cCCCCHHHHHHHHHHcCCChhhHHH
Q psy8528 83 HGWLPISAMHYVADFLNLPKMRVYE 107 (240)
Q Consensus 83 ~G~Lp~~am~~VA~~L~lp~~~Vye 107 (240)
+-|.+.+....+|+.+||+..+|.-
T Consensus 32 ~pYPs~~~r~~LA~~~gLs~~qV~~ 56 (83)
T 2dmn_A 32 KAYPSEEEKQMLSEKTNLSLLQISN 56 (83)
T ss_dssp TCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCcCHHHhhH
Confidence 3599999999999999999999863
No 100
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=40.16 E-value=7.1 Score=27.93 Aligned_cols=49 Identities=10% Similarity=0.118 Sum_probs=32.3
Q ss_pred HHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHH
Q psy8528 50 PDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEV 108 (240)
Q Consensus 50 ~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeV 108 (240)
.+....+.+.|...|. +..-+=.|+. ..|+ ...+||+.||++...|+.-
T Consensus 25 ~~~~~~l~~~l~~L~~---~~r~vl~l~~---~~g~----s~~eIA~~lgis~~tV~~~ 73 (92)
T 3hug_A 25 ALDRLLIADALAQLSA---EHRAVIQRSY---YRGW----STAQIATDLGIAEGTVKSR 73 (92)
T ss_dssp HHHHHHHHHHHHTSCH---HHHHHHHHHH---TSCC----CHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCH---HHHHHHHHHH---HcCC----CHHHHHHHHCcCHHHHHHH
Confidence 3456678888888884 2222223332 2354 5788999999999998754
No 101
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=40.07 E-value=8.5 Score=29.17 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 87 PISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 87 p~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
..-.|+.||+..|++. .|||.+|..|-
T Consensus 31 ~~~t~~~Ia~~agvs~------~t~Y~~F~sK~ 57 (190)
T 2v57_A 31 PTAALGDIAAAAGVGR------STVHRYYPERT 57 (190)
T ss_dssp TTCCHHHHHHHHTCCH------HHHHHHCSSHH
T ss_pred CCCCHHHHHHHhCCCH------HHHHHHcCCHH
Confidence 6678999999999986 58899997643
No 102
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=39.90 E-value=8.8 Score=29.98 Aligned_cols=44 Identities=23% Similarity=0.110 Sum_probs=30.8
Q ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccc
Q psy8528 68 ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118 (240)
Q Consensus 68 ~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~k 118 (240)
.+..||.....+=.+.|| ..-.|+.||+..||+.. |||.+|..|
T Consensus 29 ~r~~Il~aa~~lf~~~G~-~~~tv~~IA~~agvs~~------t~Y~~F~sK 72 (215)
T 2qko_A 29 RRAALVNAAIEVLAREGA-RGLTFRAVDVEANVPKG------TASNYFPSR 72 (215)
T ss_dssp HHHHHHHHHHHHHHHTCT-TTCCHHHHHHHSSSTTT------CHHHHCSCH
T ss_pred HHHHHHHHHHHHHHHhCh-hhccHHHHHHHcCCCcc------hHHHhCCCH
Confidence 345666666666667886 44567889999999874 677777654
No 103
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=38.78 E-value=42 Score=24.17 Aligned_cols=22 Identities=5% Similarity=-0.185 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHHcCCChhhHH
Q psy8528 85 WLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 85 ~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
|++.+...++|+.|+|+..+|-
T Consensus 45 yp~~~~r~~La~~lgL~e~qVk 66 (80)
T 1wh7_A 45 KHDDVAVEQFCAETGVRRQVLK 66 (80)
T ss_dssp SSTTHHHHHHHHHSCCCHHHHH
T ss_pred CCCHHHHHHHHHHhCcCcCccc
Confidence 7778888999999999998874
No 104
>2lxl_A Vacuolar protein sorting-associated protein VTA1; MIT, protein transport; NMR {Homo sapiens} PDB: 2lxm_A
Probab=38.60 E-value=16 Score=30.71 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=17.9
Q ss_pred ecCCCHH----------hHHHHHHHHhcCCCCCCCC
Q psy8528 163 RQDLEPK----------DMEQIIDDLKAGKKPAPGP 188 (240)
Q Consensus 163 y~~Ltpe----------~i~~IL~~lk~g~~p~~gp 188 (240)
++.++++ +...|...|++|+.|.|||
T Consensus 131 fg~l~~e~~~k~KYAKwkA~~I~kalk~G~~P~pgp 166 (183)
T 2lxl_A 131 FGELTDENVKHRKYARWKATYIHNCLKNGETPQAGP 166 (183)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC---
T ss_pred HCCCCHHHHHhHHHHHHhHHHHHHHHHCCCCCCCCC
Confidence 5666654 3457889999999999999
No 105
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=38.57 E-value=15 Score=35.94 Aligned_cols=97 Identities=21% Similarity=0.327 Sum_probs=62.4
Q ss_pred cccCCHHhHHHHHHHHHhCCC--CCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHH-----HhhhccCCcc
Q psy8528 45 KFEFTPDNKKRAEAIISIYPV--GHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE-----VATFYTMFIR 117 (240)
Q Consensus 45 ~f~ft~e~~~~i~~il~~Yp~--~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vye-----VATFYtmF~~ 117 (240)
--+.+|++..+++.+|++|.. +.+...++.+|+ .+-|-|-+ +||..||++.++|.+ -...|+.+++
T Consensus 159 vdevppemageferlierydvpidekeerileilr----enpwtphd---eiarrlglsvsevegekdpessgiyslwsr 231 (685)
T 4gfj_A 159 VDEVPPEMAGEFERLIERYDVPIDEKEERILEILR----ENPWTPHD---EIARRLGLSVSEVEGEKDPESSGIYSLWSR 231 (685)
T ss_dssp TTTCCGGGTTTTHHHHHTTTCCCCHHHHHHHHHHH----HCTTCCHH---HHHHHHTCCHHHHHCCSSSSSCSHHHHHHH
T ss_pred cccCChhhhhHHHHHHHHcCCCCChHHHHHHHHHh----cCCCCChH---HHHHHhCCchhhhcCCCCcccccHHHhhhh
Confidence 346778888999999999954 344556776664 58899975 689999999999985 3445655554
Q ss_pred ccCCcccccccccEEEEecCChhhhhcCHHHHHHHHHHHcC
Q psy8528 118 KPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN 158 (240)
Q Consensus 118 kP~G~~~~~~~~K~~I~VC~~t~C~lrGs~~Il~~l~~~Lg 158 (240)
.-+.- .| -=.+.--|++--+.+++.|-++|.
T Consensus 232 vvvni-------ey---dertakrhvkrrdrlleelyehle 262 (685)
T 4gfj_A 232 VVVNI-------EY---DERTAKRHVKRRDRLLEELYEHLE 262 (685)
T ss_dssp HHHTS-------CC---CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred heEee-------ee---chhHHHHHHHHHHHHHHHHHHHHH
Confidence 43320 00 011222345555666666655554
No 106
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=38.31 E-value=14 Score=29.84 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=29.8
Q ss_pred cccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 69 RAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 69 rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
+..|+.....+=.+.|| ..-.|+.||+..||+. .|||.+|..|-
T Consensus 48 r~~Il~aA~~lf~~~G~-~~~t~~~IA~~aGvs~------~t~Y~~F~sKe 91 (245)
T 3aqt_A 48 RARLITSARTLMAERGV-DNVGIAEITEGANIGT------GTFYNYFPDRE 91 (245)
T ss_dssp HHHHHHHHHHHHHHHCG-GGCCHHHHHHHTTSCG------GGGGGTCSSHH
T ss_pred HHHHHHHHHHHHHhcCc-ccCcHHHHHHHhCCCh------HHHHHHcCCHH
Confidence 44555555555555685 2345778999999986 58888887653
No 107
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=38.09 E-value=10 Score=29.29 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=29.0
Q ss_pred cccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 69 RAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 69 rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
+..++..-..+=.++|| ..-.|+.||+..||+. .|||.+|..|-
T Consensus 11 r~~Il~aA~~lf~~~G~-~~~t~~~Ia~~Agvs~------gt~Y~yF~sKe 54 (204)
T 3anp_C 11 RERIFRAAMELFRNRGF-QETTATEIAKAAHVSR------GTFFNYYPYKE 54 (204)
T ss_dssp HHHHHHHHHHHHHHHCT-TTCCHHHHHHHHTSCH------HHHHHHCSSTH
T ss_pred HHHHHHHHHHHHHHcCc-ccccHHHHHHHcCCch------HHHHHHcCCHH
Confidence 34455544444455686 3445788999999987 47888886543
No 108
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=37.90 E-value=26 Score=24.63 Aligned_cols=19 Identities=5% Similarity=0.025 Sum_probs=15.6
Q ss_pred cCCHHhHHHHHHHHHhCCC
Q psy8528 47 EFTPDNKKRAEAIISIYPV 65 (240)
Q Consensus 47 ~ft~e~~~~i~~il~~Yp~ 65 (240)
.++++..++++++...|..
T Consensus 2 ~ls~~~~~~~~~~F~~~D~ 20 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQP 20 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHHCC
Confidence 4678888999999999864
No 109
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=37.69 E-value=17 Score=28.22 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=28.8
Q ss_pred cccHHHHHHHHHH-HcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 69 RAAVIPLLDLAQR-QHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 69 rsalIplL~~aQ~-q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
+..|+.....+=. ++|| ..-.++.||+..|++. .|||.+|..|-
T Consensus 13 r~~Il~aa~~l~~~~~G~-~~~ti~~Ia~~Agvs~------~t~Y~~F~sK~ 57 (220)
T 3lsj_A 13 RHALMSAARHLMESGRGF-GSLSLREVTRAAGIVP------AGFYRHFSDMD 57 (220)
T ss_dssp HHHHHHHHHHHTTTSCCG-GGCCHHHHHHHHTSCG------GGGTTTCSSHH
T ss_pred HHHHHHHHHHHHHhCCCc-ccCCHHHHHHHhCCCh------hHHHHHcCCHH
Confidence 3444544444444 6675 3345778999999986 58999998643
No 110
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=37.35 E-value=16 Score=27.59 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=29.9
Q ss_pred cccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 69 RAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 69 rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
+..+|..-..+=.++|| ..-.|+.||+..|++. .|||.+|..|-
T Consensus 13 r~~Il~aA~~lf~~~G~-~~~ti~~IA~~agvs~------~t~Y~~F~sK~ 56 (204)
T 3eup_A 13 RQFIIESTAPVFNVKGL-AGTSLTDLTEATNLTK------GSIYGNFENKE 56 (204)
T ss_dssp HHHHHHHHHHHHHHHHH-HHCCHHHHHHHHTCCH------HHHTTTSSSHH
T ss_pred HHHHHHHHHHHHHHcCc-ccCCHHHHHHHhCCCc------HHHHHhCCCHH
Confidence 44555555555555674 3345788999999986 58899997554
No 111
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=37.22 E-value=14 Score=28.36 Aligned_cols=44 Identities=9% Similarity=0.095 Sum_probs=30.2
Q ss_pred cccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 69 RAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 69 rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
+..||..-..+=.++|| ..-.|+.||+..||+. .|||.+|..|-
T Consensus 21 r~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~------~tlY~~F~sK~ 64 (216)
T 3qqa_A 21 QEKIKAVALELFLTKGY-QETSLSDIIKLSGGSY------SNIYDGFKSKE 64 (216)
T ss_dssp HHHHHHHHHHHHHHTCT-TTCCHHHHHHHHTTSC------CSSSCSCCSHH
T ss_pred HHHHHHHHHHHHHHcCh-hhCCHHHHHHHhCCCH------HHHHHhcCCHH
Confidence 34555555555556785 3445788999999986 68999997554
No 112
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=36.87 E-value=15 Score=29.59 Aligned_cols=44 Identities=18% Similarity=0.147 Sum_probs=31.6
Q ss_pred CcccHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccc
Q psy8528 68 ERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118 (240)
Q Consensus 68 ~rsalIplL~~aQ~q~-G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~k 118 (240)
.+..++..-..+=.+. || ..-.|+.||+.+|++.. |||.+|..|
T Consensus 6 tr~~Il~aA~~l~~~~~G~-~~~s~~~IA~~aGvs~~------tlY~~F~sK 50 (220)
T 1z0x_A 6 SKDTIIAAAFSLLEKSPTL-EQLSMRKVAKQLGVQAP------AIYWYFKNK 50 (220)
T ss_dssp SHHHHHHHHHHHHHHSCCG-GGCCHHHHHHHHTSCHH------HHHTTCSSH
T ss_pred hHHHHHHHHHHHHHhcCCc-ccCCHHHHHHHcCCCHH------HHHHhcCCH
Confidence 4566776666666677 85 34457889999999875 678888654
No 113
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=36.75 E-value=17 Score=28.45 Aligned_cols=44 Identities=14% Similarity=0.254 Sum_probs=30.1
Q ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccc
Q psy8528 68 ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118 (240)
Q Consensus 68 ~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~k 118 (240)
.+..||..-..+=.++|| ..-.|+.||+..||+.. |||.+|..|
T Consensus 12 ~r~~Il~aA~~lf~~~G~-~~~s~~~IA~~aGvskg------tlY~~F~sK 55 (219)
T 2w53_A 12 TREGILDAAEACFHEHGV-ARTTLEMIGARAGYTRG------AVYWHFKNK 55 (219)
T ss_dssp CHHHHHHHHHHHHHHHCT-TTCCHHHHHHHHTSCHH------HHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHhCc-ccCCHHHHHHHhCCCch------HHhhcCCCH
Confidence 455566655555556786 34567889999999864 677777654
No 114
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=36.67 E-value=13 Score=29.24 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=37.5
Q ss_pred cCCHHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccccCC
Q psy8528 47 EFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIG 121 (240)
Q Consensus 47 ~ft~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP~G 121 (240)
.||++.+++++++...|..+ ..|+|+.+-+..+-..||..+.+- ++......+.....|
T Consensus 4 ~Lt~eqi~elk~~F~~~D~d---------------~dG~I~~~El~~~l~~lg~~~~~~-~~~~~~~~~d~d~~~ 62 (176)
T 2lhi_A 4 NLTEEQIAEFKEAFALFDKD---------------NNGSISSSELATVMRSLGLSPSEA-EVNDLMNEIDVDGNH 62 (176)
T ss_dssp CCCTTGGGHHHHHHHTTCSS---------------CSSCBCHHHHHHHHHHHTCCCCHH-HHHHHHTTTCSSCSS
T ss_pred cCCHHHHHHHHHHHHHHCCC---------------CCCCCCHHHHHHHHHHcCCChhHH-HHHHHHHHhCcCCCc
Confidence 57888899999999999632 247777777777777777665442 233333344443333
No 115
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=36.56 E-value=66 Score=24.62 Aligned_cols=91 Identities=11% Similarity=0.231 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHH---------Hh-hhccCCccccCCcccccccccE---EEEecCChh
Q psy8528 74 PLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE---------VA-TFYTMFIRKPIGEERIKSILQY---HLNWCTTTP 140 (240)
Q Consensus 74 plL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vye---------VA-TFYtmF~~kP~G~~~~~~~~K~---~I~VC~~t~ 140 (240)
.+|..+|+. |-+| ...+|+.||++++.|.. ++ .|....+.+..| .. .+.+-..
T Consensus 11 ~il~~L~~~-~~~s---~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~G--------~~~~a~v~v~~~-- 76 (151)
T 2cyy_A 11 KIIKILQND-GKAP---LREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALG--------YSMLAFILVKVK-- 76 (151)
T ss_dssp HHHHHHHHC-TTCC---HHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCGGGGT--------CCEEEEEEEEEC--
T ss_pred HHHHHHHHc-CCCC---HHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECHHHCC--------ccEEEEEEEEEC--
Confidence 567777653 5454 45789999999998875 33 355556777778 32 2222111
Q ss_pred hhhcCHHHHHHHHHHHcCc------------eEeecCCCHHhHHHHHHHHhc
Q psy8528 141 CWLRNSDAILEVIKKKCNM------------MLERQDLEPKDMEQIIDDLKA 180 (240)
Q Consensus 141 C~lrGs~~Il~~l~~~LgI------------mv~y~~Ltpe~i~~IL~~lk~ 180 (240)
-..-+++.+.+.+.=++ ++...--+.+++.++++.+.+
T Consensus 77 --~~~~~~~~~~l~~~p~V~~~~~~tG~~d~~~~v~~~d~~~l~~~~~~l~~ 126 (151)
T 2cyy_A 77 --AGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGS 126 (151)
T ss_dssp --TTCHHHHHHHHHTCTTEEEEEECSSSSSEEEEEEESSHHHHHHHHHHHHT
T ss_pred --cccHHHHHHHHhcCCCeeEeeEecCCCCEEEEEEECCHHHHHHHHHHHhC
Confidence 23457788888775555 222223366888888877765
No 116
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=36.37 E-value=45 Score=26.36 Aligned_cols=35 Identities=17% Similarity=0.044 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 72 VIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 72 lIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
-+.+|...=...-|.+.+....+|+.|||+..+|.
T Consensus 104 q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 138 (151)
T 3d1n_I 104 AIEALNAYFEKNPLPTGQEITEMAKELNYDREVVR 138 (151)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhH
Confidence 45667666667789999999999999999999885
No 117
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=36.34 E-value=10 Score=29.45 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=30.3
Q ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 68 ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 68 ~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
.+..++..-..+=.++|| ..-.|+.||+..||+. .|||.+|..|-
T Consensus 11 ~r~~Il~aA~~lf~~~G~-~~~s~~~Ia~~Agvsk------gt~Y~yF~sKe 55 (197)
T 2f07_A 11 KYEKILQAAIEVISEKGL-DKASISDIVKKAGTAQ------GTFYLYFSSKN 55 (197)
T ss_dssp HHHHHHHHHHHHHHHHCT-TTCCHHHHHHHHTSCH------HHHHHHCSSST
T ss_pred HHHHHHHHHHHHHHHhCc-ccCCHHHHHHHhCCCc------hHHHHhCCCHH
Confidence 345555555555556785 3445788999999986 47888887653
No 118
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=36.28 E-value=23 Score=26.09 Aligned_cols=76 Identities=13% Similarity=0.064 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcCCChhhHHHHhhhccCCccccCCcccccccccEEEEec--C--ChhhhhcCHHHHHHHHHHHcCc----
Q psy8528 88 ISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWC--T--TTPCWLRNSDAILEVIKKKCNM---- 159 (240)
Q Consensus 88 ~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP~G~~~~~~~~K~~I~VC--~--~t~C~lrGs~~Il~~l~~~LgI---- 159 (240)
.++-+.+|+.||.|.. |=+++|..--.+-.-|.++ | -..|+|- . +..-.-+=+.+|.+.+++.||+
T Consensus 20 ~~l~~~l~~~l~kPe~--~~~v~~~~~~~~~~~g~~~-~---~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~ 93 (113)
T 1hfo_A 20 SSTSALVGNILSKPGS--YVAVHINTDQQLSFGGSTN-P---AAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNR 93 (113)
T ss_dssp HHHHHHHHHHHTCCGG--GCEEEEECSCEEEETTBCS-S---CEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHHCCChH--HEEEEEeCCccEEecCCCC-C---eEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcCe
Confidence 4455679999999999 4456665443333334222 2 2333332 1 1111112256677788889998
Q ss_pred -eEeecCCCHH
Q psy8528 160 -MLERQDLEPK 169 (240)
Q Consensus 160 -mv~y~~Ltpe 169 (240)
+|.+.++.++
T Consensus 94 v~I~~~e~~~~ 104 (113)
T 1hfo_A 94 MYIHFVNLNGD 104 (113)
T ss_dssp EEEEEEECCGG
T ss_pred EEEEEEECCHH
Confidence 5556555554
No 119
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=36.09 E-value=67 Score=23.52 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=23.4
Q ss_pred HHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 77 DLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 77 ~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
...|+..-|.+.++.+.+|..||||...|-
T Consensus 24 s~f~~~~~yPd~~~r~~La~~tGL~~~~Iq 53 (71)
T 1wi3_A 24 SFIHDVGLYPDQEAIHTLSAQLDLPKHTII 53 (71)
T ss_dssp HHHHHHCSCCCHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 333444558999999999999999987763
No 120
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=36.06 E-value=16 Score=28.02 Aligned_cols=45 Identities=20% Similarity=0.353 Sum_probs=32.1
Q ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 68 ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 68 ~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
.+..++..-..+=.++|| ..-.|+.||+..|++. .|||.+|..|-
T Consensus 14 ~r~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~------~tlY~~F~sK~ 58 (217)
T 3nrg_A 14 KRSRLIDVLLDEFAQNDY-DSVSINRITERAGIAK------GSFYQYFADKK 58 (217)
T ss_dssp HHHHHHHHHHHHHHHSCG-GGCCHHHHHHHHTCCT------TGGGGTCSSHH
T ss_pred HHHHHHHHHHHHHHhcCc-ccCCHHHHHHHhCCcH------HHHHHHcCCHH
Confidence 345566655555566786 3456788999999986 58999997654
No 121
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=35.67 E-value=11 Score=29.82 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=30.1
Q ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccc
Q psy8528 68 ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118 (240)
Q Consensus 68 ~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~k 118 (240)
.+..|+..-..+=.++|| ..-.|+.||+..||+. .|||.+|..|
T Consensus 10 ~r~~Il~aA~~lf~~~Gy-~~ts~~~IA~~AGvsk------gtlY~~F~sK 53 (215)
T 1ui5_A 10 TRATIIGAAADLFDRRGY-ESTTLSEIVAHAGVTK------GALYFHFAAK 53 (215)
T ss_dssp HHHHHHHHHHHHHHHHCT-TTCCHHHHHHHHTCCH------HHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHhCc-ccCCHHHHHHHhCCCc------hhhHhhCCCH
Confidence 345566555555566787 4556788999999986 5677777644
No 122
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=35.54 E-value=58 Score=26.04 Aligned_cols=91 Identities=11% Similarity=0.231 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHH---------Hh-hhccCCccccCCcccccccccE---EEEecCChh
Q psy8528 74 PLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE---------VA-TFYTMFIRKPIGEERIKSILQY---HLNWCTTTP 140 (240)
Q Consensus 74 plL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vye---------VA-TFYtmF~~kP~G~~~~~~~~K~---~I~VC~~t~ 140 (240)
.+|..+|+. |-+| ..++|+.+|++++.|.. ++ .|...++.+..| .. .+.|-..
T Consensus 31 ~IL~~L~~~-~~~s---~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~~~~G--------~~~~a~v~v~~~-- 96 (171)
T 2e1c_A 31 KIIKILQND-GKAP---LREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALG--------YSMLAFILVKVK-- 96 (171)
T ss_dssp HHHHHHHHC-TTCC---HHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGGGGT--------CCEEEEEEEEEC--
T ss_pred HHHHHHHHc-CCCC---HHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECHHHcC--------CCEEEEEEEEEC--
Confidence 466666653 4344 45688899999888765 34 356667777788 32 2222111
Q ss_pred hhhcCHHHHHHHHHHHcCc------------eEeecCCCHHhHHHHHHHHhc
Q psy8528 141 CWLRNSDAILEVIKKKCNM------------MLERQDLEPKDMEQIIDDLKA 180 (240)
Q Consensus 141 C~lrGs~~Il~~l~~~LgI------------mv~y~~Ltpe~i~~IL~~lk~ 180 (240)
-..-+++.+.+.+.=++ ++...--+.+++.++++.+.+
T Consensus 97 --~~~~~~v~~~l~~~peV~~~~~vtG~~d~l~~v~~~d~~~l~~~l~~l~~ 146 (171)
T 2e1c_A 97 --AGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGS 146 (171)
T ss_dssp --TTCHHHHHHHHHTSTTEEEEEECSSSSSEEEEEEESSHHHHHHHHHHHHH
T ss_pred --cchHHHHHHHHhcCcCeEEEEEeeCCCCEEEEEEECCHHHHHHHHHHHhc
Confidence 23457788887765554 222223456788888877764
No 123
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=35.41 E-value=49 Score=26.22 Aligned_cols=35 Identities=23% Similarity=0.113 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 72 VIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 72 lIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
-+..|...=....|.+......+|+.|||+..+|.
T Consensus 98 Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 132 (146)
T 1au7_A 98 AKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVR 132 (146)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhch
Confidence 45666666666789999999999999999999885
No 124
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=35.30 E-value=20 Score=26.89 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=29.3
Q ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 70 AAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 70 salIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
..++..-..+=.+.||= .-.++.||+..|++. .|||.+|..|-
T Consensus 10 ~~Il~aA~~l~~~~G~~-~~s~~~IA~~agvs~------~tly~~F~sK~ 52 (180)
T 2fd5_A 10 ARILGAATQALLERGAV-EPSVGEVMGAAGLTV------GGFYAHFQSKD 52 (180)
T ss_dssp HHHHHHHHHHHHHHTTT-SCCHHHHHHHTTCCG------GGGGGTCSCHH
T ss_pred HHHHHHHHHHHHHhCcc-cCCHHHHHHHhCCCc------cHHHHHCCCHH
Confidence 34454444444557863 346788999999987 68999997543
No 125
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=34.97 E-value=20 Score=27.07 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=28.2
Q ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 70 AAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 70 salIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
..++..-..+=.++|| ..-.|+.||+..|++. .|||.+|..+-
T Consensus 6 ~~Il~aa~~l~~~~G~-~~~ti~~IA~~agvs~------~t~Y~~F~sK~ 48 (189)
T 3geu_A 6 DKIIDNAITLFSEKGY-DGTTLDDIAKSVNIKK------ASLYYHFDSKK 48 (189)
T ss_dssp HHHHHHHHHHHHHHHH-HHCCHHHHHHHTTCCH------HHHTTTCSSHH
T ss_pred HHHHHHHHHHHHHcCc-ccCCHHHHHHHhCCCH------HHHHHHhCCHH
Confidence 3444444444444563 3445788999999986 58999997653
No 126
>3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid synthase, type III PKS, acyltransferase, transferase; 2.58A {Neurospora crassa}
Probab=34.91 E-value=10 Score=35.85 Aligned_cols=54 Identities=15% Similarity=0.259 Sum_probs=39.7
Q ss_pred cCHHHHHHHHHHHcCc----e---Ee----ecCCCHHhHHHHHHHHhcC--CCCCCC----CCCCCCCCcC
Q psy8528 144 RNSDAILEVIKKKCNM----M---LE----RQDLEPKDMEQIIDDLKAG--KKPAPG----PSGYTSGIGS 197 (240)
Q Consensus 144 rGs~~Il~~l~~~LgI----m---v~----y~~Ltpe~i~~IL~~lk~g--~~p~~g----p~g~~~~~~~ 197 (240)
.|...|++.+.++||+ + ++ |+++....+--.|+++.+. ...++| -++.+.|+|+
T Consensus 326 qan~rIl~~v~~~Lgl~~ek~~~s~~~l~~yGNtsSASip~aL~~~~~~~~g~l~~Gg~~~d~vll~gfG~ 396 (465)
T 3e1h_A 326 PGGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDALAPGGKVKEYVVGCAFGP 396 (465)
T ss_dssp CSSHHHHHHHHHHHTCCGGGGHHHHHHHHHHCBCGGGHHHHHHHHHTSTTTTSCSSSSCCCSEEEEEEEET
T ss_pred CCChHHHHHHHHHhCcCHHHhHHHHHHHhcceechHhHHHHHHHHHHHhcccccCCCCCCCCEEEEEEEhH
Confidence 4678999999999999 2 22 8999999999999988764 345555 3444455554
No 127
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=34.81 E-value=35 Score=24.13 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=38.4
Q ss_pred ccCCHHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccccCC
Q psy8528 46 FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIG 121 (240)
Q Consensus 46 f~ft~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP~G 121 (240)
-.+|++..+..++-|..|+.+ ++.|++.+ |+---|-+|+.||-++...+.+
T Consensus 9 ~~WT~eE~~~Fe~~l~~yGKd---------f~~I~~~~----------------v~~Kt~~~~v~fYY~wKkt~~y 59 (70)
T 2crg_A 9 EEWSASEACLFEEALEKYGKD---------FNDIRQDF----------------LPWKSLTSIIEYYYMWKTTDRY 59 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCSC---------HHHHHHTT----------------CSSSCHHHHHHHHHHHHTCCSS
T ss_pred CCCCHHHHHHHHHHHHHhCcc---------HHHHHHHH----------------cCCCCHHHHHHHHHhhcCCchH
Confidence 368999999999999999842 45555421 4455688999999888777766
No 128
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=34.16 E-value=25 Score=26.78 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=32.4
Q ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccc
Q psy8528 68 ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118 (240)
Q Consensus 68 ~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~k 118 (240)
.+..||..-..+=.++|| . -.|+.||+..||+.. |||.+|..|
T Consensus 16 ~r~~Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~------tlY~~F~sK 58 (194)
T 2q24_A 16 NRDKILAAAVRVFSEEGL-D-AHLERIAREAGVGSG------TLYRNFPTR 58 (194)
T ss_dssp CHHHHHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHH------HHHHHCCSH
T ss_pred HHHHHHHHHHHHHHhcCc-C-CCHHHHHHHhCCChH------HHHHHcCCH
Confidence 356666666666667898 6 899999999999975 677777654
No 129
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=34.15 E-value=19 Score=27.78 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=28.3
Q ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 70 AAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 70 salIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
..|+..-..+=.++||= .-.|+.||+..|++. .|||.+|..|-
T Consensus 14 ~~Il~aA~~lf~~~G~~-~~s~~~IA~~agvs~------~t~Y~~F~sK~ 56 (212)
T 2ras_A 14 ARLVDVAQAIVEERGGA-GLTLSELAARAGISQ------ANLSRYFETRE 56 (212)
T ss_dssp HHHHHHHHHHHHHHTSS-CCCHHHHHHHHTSCH------HHHTTTCSSHH
T ss_pred HHHHHHHHHHHHHhCcc-cCcHHHHHHHhCCCH------HHHHHHcCCHH
Confidence 44444444444456753 345778999999986 58889997653
No 130
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A*
Probab=34.05 E-value=15 Score=32.16 Aligned_cols=53 Identities=13% Similarity=0.247 Sum_probs=39.2
Q ss_pred cCHHHHHHHHHHHcCc----e-Ee---ecCCCHHhHHHHHHHHhcCCCCCCC--CCCCCCCCc
Q psy8528 144 RNSDAILEVIKKKCNM----M-LE---RQDLEPKDMEQIIDDLKAGKKPAPG--PSGYTSGIG 196 (240)
Q Consensus 144 rGs~~Il~~l~~~LgI----m-v~---y~~Ltpe~i~~IL~~lk~g~~p~~g--p~g~~~~~~ 196 (240)
.++..+++.+.++||+ + .+ |+++...++--.|+++.+....++| -...+.|+|
T Consensus 247 q~~~~i~~~~~~~lgl~~ek~~~~l~~~GNt~sasi~~~L~~~~~~g~~~~G~~d~vll~~fG 309 (321)
T 3il6_A 247 QANVRIIDKIARKTKISREKFLTNMDKYGNTSAASIPILLDEAVENGTLILGSQQRVVLTGFG 309 (321)
T ss_dssp CSCHHHHHHHHHHHTCCGGGBCCCGGGTCBCGGGHHHHHHHHHHHTTSSCTTSCCEEEEEEEE
T ss_pred CCCHHHHHHHHHHcCcCHHHhhhhHhhcccHHHHHHHHHHHHHHHhCCCCCCCCCEEEEEEEe
Confidence 5678899999999999 2 22 9999999999999887655567777 433343433
No 131
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=33.98 E-value=17 Score=28.09 Aligned_cols=42 Identities=14% Similarity=0.289 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccc
Q psy8528 70 AAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118 (240)
Q Consensus 70 salIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~k 118 (240)
..+|..-..+=.++|| ..-.|+.||+..||+.. |||.+|..|
T Consensus 15 ~~Il~aA~~lf~~~Gy-~~ts~~~IA~~agvs~g------tlY~yF~sK 56 (205)
T 1rkt_A 15 AEILEAAKTVFKRKGF-ELTTMKDVVEESGFSRG------GVYLYFSST 56 (205)
T ss_dssp HHHHHHHHHHHHHHCS-TTCCHHHHHHHHTSCHH------HHHTTCSCH
T ss_pred HHHHHHHHHHHHHcCc-ccCCHHHHHHHHCCCcc------hhhhhCCCH
Confidence 3444433333344686 34557889999999875 777888644
No 132
>3euo_A Type III pentaketide synthase; alpha helix, acyltransferase, transferase; 1.75A {Neurospora crassa} PDB: 3eut_A* 3euq_A*
Probab=33.57 E-value=5.7 Score=36.01 Aligned_cols=44 Identities=16% Similarity=0.312 Sum_probs=34.6
Q ss_pred cCHHHHHHHHHHHcCc----e---Ee----ecCCCHHhHHHHHHHHhcCC--CCCCC
Q psy8528 144 RNSDAILEVIKKKCNM----M---LE----RQDLEPKDMEQIIDDLKAGK--KPAPG 187 (240)
Q Consensus 144 rGs~~Il~~l~~~LgI----m---v~----y~~Ltpe~i~~IL~~lk~g~--~p~~g 187 (240)
.|+..|++.+.++||+ + ++ |+++....+--.|+++.+.. ..++|
T Consensus 297 q~n~~il~~v~~~Lgl~~ek~~~s~~~l~~~GNtssAsi~~~L~~~~~~g~~~l~~G 353 (379)
T 3euo_A 297 PGGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDALAPG 353 (379)
T ss_dssp CSSHHHHHHHHHHHTCCGGGGHHHHHHHHHHCBCGGGHHHHHHHHHTSHHHHTTCGG
T ss_pred CCChHHHHHHHHHhCCCHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhhcccccCCC
Confidence 4678999999999999 2 22 89999999999998886532 45555
No 133
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=33.35 E-value=19 Score=30.65 Aligned_cols=43 Identities=21% Similarity=0.214 Sum_probs=28.3
Q ss_pred cccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccc
Q psy8528 69 RAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118 (240)
Q Consensus 69 rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~k 118 (240)
+..|+..--.+=++.|| ..-.|+.||+.+|++.+ |||.+|..|
T Consensus 29 r~~Il~AA~~L~~e~G~-~~~Smr~IA~~aGVs~~------tlY~hF~~K 71 (267)
T 2y2z_A 29 RDQIVRAAVKVADTEGV-EAASMRRVAAELGAGTM------SLYYYVPTK 71 (267)
T ss_dssp HHHHHHHHHHHHHHHCT-TTCCHHHHHHHHTCCHH------HHHTTCCSH
T ss_pred HHHHHHHHHHHHHhcCc-ccCCHHHHHHHhCCCHH------HHHHHcCCH
Confidence 44455544444556675 44458889999999875 667777543
No 134
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=33.33 E-value=10 Score=30.14 Aligned_cols=45 Identities=16% Similarity=0.041 Sum_probs=27.3
Q ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 68 ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 68 ~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
.+..||..-..+=.++|| ..-.|+.||+..|++. .|||.+|..|-
T Consensus 36 ~r~~Il~AA~~lf~~~G~-~~~s~~~IA~~AGvs~------~tlY~~F~sKe 80 (237)
T 3kkd_A 36 RRQAILDAAMRLIVRDGV-RAVRHRAVAAEAQVPL------SATTYYFKDID 80 (237)
T ss_dssp HHHHHHHHHHHHHHHHCG-GGCCHHHHHHHHTSCT------TTC-----CHH
T ss_pred HHHHHHHHHHHHHHhcCh-hhcCHHHHHHHhCCCh------hHHHHHcCCHH
Confidence 455666655555566787 3445788999999986 58999997553
No 135
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=33.27 E-value=16 Score=28.97 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=31.6
Q ss_pred HHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccccCC
Q psy8528 81 RQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIG 121 (240)
Q Consensus 81 ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP~G 121 (240)
+..||+..+ ++.||+.|+++..+|..|...-..| .|.|
T Consensus 33 D~~GYL~~~-l~eia~~l~~~~~eve~vL~~iQ~~--dP~G 70 (130)
T 2k9m_A 33 NEKGFLSKS-VEEISDVLRCSVEELEKVRQKVLRL--EPLG 70 (130)
T ss_dssp CTTSSBSSC-HHHHHHHTTCCHHHHHHHHHHHHTS--SSCC
T ss_pred CCCCCCCCC-HHHHHHHcCCCHHHHHHHHHHHhcC--CCCc
Confidence 457999865 5779999999999999999987765 6776
No 136
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=33.21 E-value=78 Score=21.74 Aligned_cols=53 Identities=11% Similarity=0.068 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhh
Q psy8528 52 NKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATF 111 (240)
Q Consensus 52 ~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATF 111 (240)
....+.+.+..+.-. ..-..+|..+.+. |-++ +..||+.++++.+.|+....-
T Consensus 5 ~~~~~~~~l~~~~l~---~~~~~il~~l~~~-~~~s---~~ela~~l~is~~tv~~~l~~ 57 (109)
T 1sfx_A 5 PLGELVKALEKLSFK---PSDVRIYSLLLER-GGMR---VSEIARELDLSARFVRDRLKV 57 (109)
T ss_dssp HHHHHHHHHHHTCCC---HHHHHHHHHHHHH-CCBC---HHHHHHHHTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCC---HHHHHHHHHHHHc-CCCC---HHHHHHHHCCCHHHHHHHHHH
Confidence 356677888888632 2334455555543 4454 577999999999999987754
No 137
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=33.11 E-value=17 Score=29.28 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=33.0
Q ss_pred CCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccc
Q psy8528 67 HERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118 (240)
Q Consensus 67 ~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~k 118 (240)
..+..||..-..+=.+.|| ..-.|+.||+.+|++. .|||.+|..|
T Consensus 25 ~tr~~Il~aA~~l~~~~G~-~~~s~~~IA~~aGvs~------~tlY~~F~~K 69 (211)
T 3fiw_A 25 MNRETVITEALDLLDEVGL-DGVSTRRLAKRLGVEQ------PSLYWYFRTK 69 (211)
T ss_dssp CCHHHHHHHHHHHHHHHCG-GGCCHHHHHHHHTSCT------HHHHTTCSSH
T ss_pred cCHHHHHHHHHHHHHhcCc-ccCCHHHHHHHhCCCh------hHHHHHcCCH
Confidence 4567777777666677785 3345788999999987 5788888643
No 138
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=32.94 E-value=18 Score=28.08 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=28.1
Q ss_pred cccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccc
Q psy8528 69 RAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118 (240)
Q Consensus 69 rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~k 118 (240)
+..+|..-..+=.++||= .-.|+.||+..||+.. |||.+|..|
T Consensus 16 r~~Il~aA~~lf~~~G~~-~~s~~~IA~~agvsk~------tlY~yF~sK 58 (199)
T 3crj_A 16 TEEIMQATYRALREHGYA-DLTIQRIADEYGKSTA------AVHYYYDTK 58 (199)
T ss_dssp HHHHHHHHHHHHHHHTTT-TCCHHHHHHHHTSCHH------HHHTTCSSH
T ss_pred HHHHHHHHHHHHHHcCcc-cCCHHHHHHHhCCChh------HHhhhcCCH
Confidence 344554444444556863 4457789999999864 778888654
No 139
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=32.88 E-value=56 Score=26.17 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 72 VIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 72 lIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
-+..|...=....|.+......+|+.|||+..+|.
T Consensus 112 Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 146 (160)
T 1e3o_C 112 IRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIR 146 (160)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhh
Confidence 45556666666789999999999999999999885
No 140
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=32.83 E-value=61 Score=24.01 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=34.0
Q ss_pred ccccCCHHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHh
Q psy8528 44 VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVA 109 (240)
Q Consensus 44 ~~f~ft~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVA 109 (240)
.++.++++..++++++...+.. . .|+|+.+-+..+-..+|++..++.++.
T Consensus 5 ~~w~ls~~e~~~~~~~F~~~D~-~---------------dG~Is~~el~~~l~~~gl~~~el~~i~ 54 (106)
T 1eh2_A 5 SPWAVKPEDKAKYDAIFDSLSP-V---------------NGFLSGDKVKPVLLNSKLPVDILGRVW 54 (106)
T ss_dssp -CCSSCHHHHHHHHHHHTTSCC-S---------------SSCCBHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCC-C---------------CCeEcHHHHHHHHHHcCCCHHHHHHHH
Confidence 4577899999999999998863 1 266666666666666666655555543
No 141
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=32.78 E-value=29 Score=24.64 Aligned_cols=31 Identities=6% Similarity=0.039 Sum_probs=24.4
Q ss_pred HHHHHHHcCCChhhHHHHhhhc-cCCccccCC
Q psy8528 91 MHYVADFLNLPKMRVYEVATFY-TMFIRKPIG 121 (240)
Q Consensus 91 m~~VA~~L~lp~~~VyeVATFY-tmF~~kP~G 121 (240)
++++|++|||+...||..+.=- ......++|
T Consensus 19 i~EaAeylgIg~~~l~~L~~~~~~~~~~~~iG 50 (70)
T 1y6u_A 19 IEEASKYFRIGENKLRRLAEENKNANWLIMNG 50 (70)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHCTTCSSEEEET
T ss_pred HHHHHHHHCcCHHHHHHHHHcCCCCCcEEEeC
Confidence 6789999999999999999654 234456677
No 142
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=32.47 E-value=12 Score=29.19 Aligned_cols=45 Identities=11% Similarity=0.257 Sum_probs=7.8
Q ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 68 ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 68 ~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
.+..|+.....+=.+.|| ..-.++.||+..|++. .|||.+|..|-
T Consensus 31 ~r~~Il~aa~~l~~~~G~-~~~ti~~IA~~agvs~------~t~Y~~F~sK~ 75 (212)
T 2np3_A 31 TREAILTAARVCFAERGF-DATSLRRIAETAGVDQ------SLVHHFYGTKE 75 (212)
T ss_dssp ----CHHHHHHHC----------------------------------CCC-C
T ss_pred HHHHHHHHHHHHHHHcCc-ccccHHHHHHHcCCCH------HHHHHHhCCHH
Confidence 455566655555555774 4556788999999976 58899997654
No 143
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=32.35 E-value=1.4e+02 Score=24.73 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=41.0
Q ss_pred HhhhccCCccccCCcccccccccEEEEecCC-----hhhhhcCHHHHHHHHHH---HcCceEe-ecCCCHHhHHHHHHHH
Q psy8528 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTT-----TPCWLRNSDAILEVIKK---KCNMMLE-RQDLEPKDMEQIIDDL 178 (240)
Q Consensus 108 VATFYtmF~~kP~G~~~~~~~~K~~I~VC~~-----t~C~lrGs~~Il~~l~~---~LgImv~-y~~Ltpe~i~~IL~~l 178 (240)
-+..|.| +.+|+| .-.|--+.. ..-.-.|++.=.+.|++ .||--|. |.|||.++|.+.|.++
T Consensus 33 ~~~~Y~m-~~~~rG--------~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~~dlt~~em~~~l~~~ 103 (179)
T 3p45_A 33 PAEKYKM-DHRRRG--------IALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEV 103 (179)
T ss_dssp TTCBCCC-CSSBCC--------EEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHH
T ss_pred ccccCCC-CCCccC--------EEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH
Confidence 3578999 557998 444433322 11223566544444443 4676555 9999999999999998
Q ss_pred hc
Q psy8528 179 KA 180 (240)
Q Consensus 179 k~ 180 (240)
..
T Consensus 104 ~~ 105 (179)
T 3p45_A 104 ST 105 (179)
T ss_dssp HT
T ss_pred hh
Confidence 64
No 144
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A
Probab=32.35 E-value=17 Score=32.47 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=40.2
Q ss_pred cCHHHHHHHHHHHcCc----e-Ee---ecCCCHHhHHHHHHHHhcCCCCCCCCCCCCCCCcC
Q psy8528 144 RNSDAILEVIKKKCNM----M-LE---RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGS 197 (240)
Q Consensus 144 rGs~~Il~~l~~~LgI----m-v~---y~~Ltpe~i~~IL~~lk~g~~p~~gp~g~~~~~~~ 197 (240)
.++..+++.+.++||+ + .+ |+++...++--.|+++.+....++|-...+.|+|+
T Consensus 293 q~n~~i~~~~~~~Lgl~~ek~~~~l~~~GNtssAsipl~L~~~~~~g~~~~Gd~vll~~fG~ 354 (365)
T 3gwa_A 293 QANRFMLDALRKKMKIPEHKFPVLMEHCGNTVSSTLPLALETMRANGTLARGMRLMLLGFGV 354 (365)
T ss_dssp CCCHHHHHHHHHHHTCCGGGSCCCCTTTCBCGGGHHHHHHHHHHHTTCCCTTCEEEEEEEET
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHhcccchHHHHHHHHHHHHHHcCCCCCCCEEEEEEEeh
Confidence 3667899999999998 2 22 99999999998888876555677776555544443
No 145
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=31.94 E-value=14 Score=28.62 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=28.4
Q ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 70 AAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 70 salIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
..||..-..+=.++|| ..-.|+.||+..||+. .|||.+|..|.
T Consensus 17 ~~Il~aA~~lf~~~G~-~~~s~~~IA~~agvs~------~tlY~~F~sKe 59 (204)
T 2ibd_A 17 TELLDIAATLFAERGL-RATTVRDIADAAGILS------GSLYHHFDSKE 59 (204)
T ss_dssp HHHHHHHHHHHHHHCS-TTCCHHHHHHHTTSCH------HHHHHHCSCHH
T ss_pred HHHHHHHHHHHHHcCc-hhcCHHHHHHHhCCCc------hhHHHhcCCHH
Confidence 3444443333345675 3456888999999987 57888887654
No 146
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=31.74 E-value=60 Score=25.82 Aligned_cols=36 Identities=11% Similarity=-0.038 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHH
Q psy8528 72 VIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107 (240)
Q Consensus 72 lIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vye 107 (240)
-+.+|...=+.+-|.+.+....+|..|||+..+|.-
T Consensus 108 q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~ 143 (164)
T 2d5v_A 108 QRRTLHAIFKENKRPSKELQITISQQLGLELSTVSN 143 (164)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhh
Confidence 345565555666899999999999999999999863
No 147
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=31.26 E-value=61 Score=26.25 Aligned_cols=35 Identities=23% Similarity=0.031 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 72 VIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 72 lIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
-+..|...=....|.+......+|+.|||+..+|.
T Consensus 110 Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 144 (164)
T 2xsd_C 110 VKGALESHFLKCPKPSAHEITGLADSLQLEKEVVR 144 (164)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhh
Confidence 45566666666789999999999999999999885
No 148
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=31.04 E-value=14 Score=29.41 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=30.5
Q ss_pred cccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 69 RAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 69 rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
+..|+.....+=.+.|| ..-.|+.||+..||+. .|||.+|..|-
T Consensus 45 r~~Il~aA~~l~~~~G~-~~~tv~~IA~~AGvs~------~t~Y~~F~sKe 88 (229)
T 3bni_A 45 LTRILDACADLLDEVGY-DALSTRAVALRADVPI------GSVYRFFGNKR 88 (229)
T ss_dssp HHHHHHHHHHHHHHHCT-TTCCHHHHHHHHTCCH------HHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHhcCh-hhccHHHHHHHHCCCc------hhHHHHcCCHH
Confidence 34566655555556785 3445788999999986 58888897543
No 149
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=30.65 E-value=23 Score=27.39 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=26.5
Q ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccc
Q psy8528 70 AAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118 (240)
Q Consensus 70 salIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~k 118 (240)
..||..-..+=.++|| ..-.|+.||+..||+.. |||.+|..|
T Consensus 12 ~~Il~aA~~lf~~~G~-~~~s~~~IA~~aGvsk~------tlY~~F~sK 53 (203)
T 3cdl_A 12 ESIVQAAIAEFGDRGF-EITSMDRIAARAEVSKR------TVYNHFPSK 53 (203)
T ss_dssp HHHHHHHHHHHHHHCT-TTCCHHHHHHHTTSCHH------HHHTTSSSH
T ss_pred HHHHHHHHHHHHHcCc-hhcCHHHHHHHhCCCHH------HHHHHCCCH
Confidence 3444433333344685 34457889999999975 667777643
No 150
>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcr regulator; HET: TDC; 2.49A {Pasteurella multocida}
Probab=30.59 E-value=23 Score=28.55 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=29.9
Q ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccc
Q psy8528 68 ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118 (240)
Q Consensus 68 ~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~k 118 (240)
.+..|+..-..+=.+.|| ..-.|+.||+.+|++++ |||.+|..|
T Consensus 5 tr~~Il~aA~~l~~~~G~-~~~s~~~IA~~agvs~~------tlY~~f~~K 48 (207)
T 2vpr_A 5 DKEQVIDNALILLNEVGI-EGLTTRKLAQKIGVEQP------TLYWHVKNK 48 (207)
T ss_dssp CHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHTCCHH------HHTTTCCSH
T ss_pred cHHHHHHHHHHHHHhcCc-ccCCHHHHHHHhCCChh------HHHHHcCCH
Confidence 455666655555556674 34568899999999875 677777654
No 151
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=30.30 E-value=62 Score=25.15 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=27.5
Q ss_pred eEe-ecCCCHHhHHHHHHHHhcCCC--CCCCCCCCCCCCcCcC
Q psy8528 160 MLE-RQDLEPKDMEQIIDDLKAGKK--PAPGPSGYTSGIGSQS 199 (240)
Q Consensus 160 mv~-y~~Ltpe~i~~IL~~lk~g~~--p~~gp~g~~~~~~~~~ 199 (240)
.|. |+.|.+|+-+.|.+.++.+.. +..+|--++|.-||-+
T Consensus 71 ~I~G~~~L~~eDQ~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~ 113 (114)
T 1v9x_A 71 DVEGIESLRWEDQQKIRKYVESGAGSNTSTSTGTSTSSSGPSS 113 (114)
T ss_dssp GEETTTTSCHHHHHHHHHHHSSCSSSTTCCCSSCCCCSCSSCC
T ss_pred HCCChHHCCHHHHHHHHHHHHHcCCCCCccCCCccccCCCCCC
Confidence 344 999999999999999988764 4445544444444433
No 152
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=30.29 E-value=50 Score=22.53 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=23.4
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhh
Q psy8528 75 LLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVAT 110 (240)
Q Consensus 75 lL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVAT 110 (240)
||..+.+..++++. .+||+.||++...|+....
T Consensus 15 IL~~L~~~~~~~s~---~eLA~~lglsr~tv~~~l~ 47 (67)
T 2heo_A 15 ILQVLSDDGGPVAI---FQLVKKCQVPKKTLNQVLY 47 (67)
T ss_dssp HHHHHHHHCSCEEH---HHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHcCCCcCH---HHHHHHHCcCHHHHHHHHH
Confidence 45555444356654 5699999999999987764
No 153
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=29.93 E-value=1.7e+02 Score=21.65 Aligned_cols=93 Identities=18% Similarity=0.209 Sum_probs=50.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHH---------Hhhhc-cCCccccCCcccccccccEEEEecCChhhhh
Q psy8528 74 PLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE---------VATFY-TMFIRKPIGEERIKSILQYHLNWCTTTPCWL 143 (240)
Q Consensus 74 plL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vye---------VATFY-tmF~~kP~G~~~~~~~~K~~I~VC~~t~C~l 143 (240)
.+|..+|+ .|-+| ..++|+.+|++++.|.. ++.-| ...+....| |.+..=-...|.-
T Consensus 8 ~il~~L~~-~~~~~---~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g---------~~~~~~v~~~~~~ 74 (141)
T 1i1g_A 8 IILEILEK-DARTP---FTEIAKKLGISETAVRKRVKALEEKGIIEGYTIKINPKKLG---------YSLVTITGVDTKP 74 (141)
T ss_dssp HHHHHHHH-CTTCC---HHHHHHHHTSCHHHHHHHHHHHHHHTSSCCCCCCCCSGGGT---------CCEEEEEEEEECG
T ss_pred HHHHHHHH-cCCCC---HHHHHHHHCcCHHHHHHHHHHHHHCCCEeccccccChHHhC---------ccEEEEEEEEECc
Confidence 46666664 45565 56789999999998865 33322 223444445 2111100111112
Q ss_pred cCHHHHHHHHHHHcCc------------eEeecCCCHHhHHHHH-HHHh
Q psy8528 144 RNSDAILEVIKKKCNM------------MLERQDLEPKDMEQII-DDLK 179 (240)
Q Consensus 144 rGs~~Il~~l~~~LgI------------mv~y~~Ltpe~i~~IL-~~lk 179 (240)
..-+++.+.+.+.-.+ ++...--+.+++.+++ +.+.
T Consensus 75 ~~~~~~~~~l~~~~~v~~~~~~~G~~d~~~~v~~~d~~~l~~~~~~~l~ 123 (141)
T 1i1g_A 75 EKLFEVAEKLKEYDFVKELYLSSGDHMIMAVIWAKDGEDLAEIISNKIG 123 (141)
T ss_dssp GGHHHHHHHHHHSTTEEEECCCSSSSSEEEEEEESSHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHhcCCCeEEEEEecCCCCEEEEEEECCHHHHHHHHHHHhh
Confidence 3457788888876665 1112223567777777 4444
No 154
>3iuz_A Putative glyoxalase superfamily protein; struct genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: MLY P6G PGE; 1.90A {Ralstonia eutropha}
Probab=29.63 E-value=1.1e+02 Score=28.17 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=43.9
Q ss_pred ceeeccCCCCCCCCccc-------cCCHHhHHHHHHHHHhC-CCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcC
Q psy8528 30 ALFVHRDTKDDNLDVKF-------EFTPDNKKRAEAIISIY-PVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLN 99 (240)
Q Consensus 30 ~~~~h~~t~~~n~~~~f-------~ft~e~~~~i~~il~~Y-p~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~ 99 (240)
.-|.|.|.+ .|+.--| .|+++.++.+++++++- . --....+.+|+.++++-|.-..++.+.|++.++
T Consensus 128 ~afrp~d~~-~~~pRVF~SeL~~e~ls~~lq~~i~~~l~~~~~--~~~~~~~~ll~~~e~~g~l~~~~a~~~l~~~l~ 202 (340)
T 3iuz_A 128 RSYAHADAP-EGIAQFFVSEFHPERFSDAFREAVGRVTGNSAD--PLTPRAQTLLWQLDRDGVLTVADGAELIGLLVP 202 (340)
T ss_dssp EEEEETTCT-TTSCEEEEEEECCTTSCHHHHHHHHHHHTTCCC--CCCHHHHHHHHHHHHHSEECHHHHHHHHHHHGG
T ss_pred EEecCCCCC-CCCCeEEEeecchhhCCHHHHHHHHHHHhhccC--CCCHhHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 456787754 3443333 67888888899999875 3 134567889999987766444556566666543
No 155
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=29.58 E-value=54 Score=23.72 Aligned_cols=50 Identities=6% Similarity=0.150 Sum_probs=36.6
Q ss_pred ccccCCHHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCCh--hhHHHH
Q psy8528 44 VKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPK--MRVYEV 108 (240)
Q Consensus 44 ~~f~ft~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~--~~VyeV 108 (240)
.+..++++..++++++...|.. +..|+|+.+-+..+-..+|... .+|.++
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~---------------d~~G~I~~~El~~~l~~lg~~~~~~ei~~l 77 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDR---------------DGNGFISKQELGTAMRSLGYMPNEVELEVI 77 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCS---------------SCSSCBCHHHHHHHHHHHTCCCCTTTHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcC---------------CCCCcCCHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4567899999999999999963 2367888888887777776543 444444
No 156
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=29.58 E-value=45 Score=24.84 Aligned_cols=76 Identities=12% Similarity=0.070 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCCChhhHHHHhhhccCCccccCCcccccccccEEEEec-CC-h--hhhhcCHHHHHHHHHHHcCc----
Q psy8528 88 ISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWC-TT-T--PCWLRNSDAILEVIKKKCNM---- 159 (240)
Q Consensus 88 ~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP~G~~~~~~~~K~~I~VC-~~-t--~C~lrGs~~Il~~l~~~LgI---- 159 (240)
.++-+.+|+.||.|+.. =+++|..--..-.-|..+ | -..|+|- .+ . .-.-+=+.+|.+.+.+.||+
T Consensus 21 ~~~~~~l~~~lgkP~~~--~~v~~~~~~~~~~~g~~~-~---~~~i~I~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~ 94 (119)
T 2os5_A 21 ERLTDLLAESMNKPRNR--IAIEVLAGQRITHGASRN-P---VAVIKVESIGALSADDNIRHTQKITQFCQDTLKLPKDK 94 (119)
T ss_dssp HHHHHHHHHHHTCCGGG--CEEEEECSCCCCBTTBCS-S---CEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHHCcChHH--EEEEEECCccEEEcCCCC-C---eEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCccc
Confidence 34556789999999993 345555433333334222 2 2333332 21 1 11112256677888889998
Q ss_pred -eEeecCCCHH
Q psy8528 160 -MLERQDLEPK 169 (240)
Q Consensus 160 -mv~y~~Ltpe 169 (240)
+|.+.++.++
T Consensus 95 v~I~~~e~~~~ 105 (119)
T 2os5_A 95 VIITYFDLQPI 105 (119)
T ss_dssp EEEEEEECCGG
T ss_pred EEEEEEECCHH
Confidence 4555555443
No 157
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=29.47 E-value=16 Score=27.73 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=27.9
Q ss_pred cccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccc
Q psy8528 69 RAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118 (240)
Q Consensus 69 rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~k 118 (240)
+..|+.....+=.++|| ..-.++.||+..|++. .|||.+|..|
T Consensus 22 r~~Il~aA~~l~~~~G~-~~~t~~~Ia~~agvs~------~t~Y~~F~~K 64 (203)
T 3mnl_A 22 RKRILDATMAIASKGGY-EAVQMRAVADRADVAV------GTLYRYFPSK 64 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-HHCCHHHHHHHHTCCH------HHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHcCC-ccCCHHHHHHHcCCCh------hHHHHHcCCH
Confidence 34455544444455674 3345788999999986 4778888654
No 158
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=29.41 E-value=34 Score=25.22 Aligned_cols=76 Identities=13% Similarity=0.091 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCChhhHHHHhhhccCCccccCCcccccccccEEEEec--C--ChhhhhcCHHHHHHHHHHHcCc----
Q psy8528 88 ISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWC--T--TTPCWLRNSDAILEVIKKKCNM---- 159 (240)
Q Consensus 88 ~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP~G~~~~~~~~K~~I~VC--~--~t~C~lrGs~~Il~~l~~~LgI---- 159 (240)
.++-+.+|+.||.|+. |=+++|..--..-.-|.++ | -..|+|- . +..-.-+=+.+|.+.+.+.||+
T Consensus 21 ~~~~~~l~~~lgkP~~--~~~v~~~~~~~~~~~g~~~-~---~~~v~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~ 94 (115)
T 1uiz_A 21 SDLTKQLAKATGKPAE--YIAIHIVPDQIMSFGDSTD-P---CAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANR 94 (115)
T ss_dssp HHHHHHHHHHHTCCGG--GCEEEEECSCEEEETTBCS-S---CEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHHCcChh--HEEEEEECCcceEECCCCC-C---eEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcce
Confidence 3455678999999999 3345554433333333222 1 1333332 1 1111112256677788888998
Q ss_pred -eEeecCCCHH
Q psy8528 160 -MLERQDLEPK 169 (240)
Q Consensus 160 -mv~y~~Ltpe 169 (240)
+|.+.++.++
T Consensus 95 v~I~~~e~~~~ 105 (115)
T 1uiz_A 95 VYINYYDLNAA 105 (115)
T ss_dssp EEEEEEECCGG
T ss_pred EEEEEEECCHH
Confidence 5556555554
No 159
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=29.41 E-value=43 Score=24.11 Aligned_cols=51 Identities=18% Similarity=0.100 Sum_probs=22.7
Q ss_pred cCCHHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHH
Q psy8528 47 EFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEV 108 (240)
Q Consensus 47 ~ft~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeV 108 (240)
...++....+.+.+...+. +.- .+|.++ ..|+ ...+||+.||++...|+.-
T Consensus 12 ~~~~~~~~~l~~~l~~Lt~--~e~---~vl~l~--~~g~----s~~eIA~~l~is~~tV~~~ 62 (95)
T 3c57_A 12 SGLVPRGSHMQDPLSGLTD--QER---TLLGLL--SEGL----TNKQIADRMFLAEKTVKNY 62 (95)
T ss_dssp ---------------CCCH--HHH---HHHHHH--HTTC----CHHHHHHHHTCCHHHHHHH
T ss_pred CccHHHHHHHHHHHhcCCH--HHH---HHHHHH--HcCC----CHHHHHHHHCcCHHHHHHH
Confidence 3455666777777877763 222 233333 4564 3478999999999988753
No 160
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=29.23 E-value=71 Score=24.81 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=40.0
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHc----CCChhhHHHHhh
Q psy8528 58 AIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFL----NLPKMRVYEVAT 110 (240)
Q Consensus 58 ~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L----~lp~~~VyeVAT 110 (240)
-+=+-||.|-.+.--+|+|-++.++ |+++-+.+||..| .+...+|...+|
T Consensus 14 WLRaGYP~GVP~~Dy~PLlALL~r~---Ltdeev~~Va~~L~~~~~i~~~dI~~~I~ 67 (103)
T 2kvc_A 14 WLRAGYPEGIPPTDSFAVLALLCRR---LSHDEVKAVANELMRLGDFDQIDIGVVIT 67 (103)
T ss_dssp HHHHHCTTCCCHHHHHHHHHHHTTT---SCHHHHHHHHHHHHHHTSSCSSCHHHHHH
T ss_pred HHHccCCCCCCCcchHHHHHHHhcc---CCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3447899988888889999888764 9999999999998 567777766665
No 161
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=28.96 E-value=16 Score=28.36 Aligned_cols=42 Identities=12% Similarity=0.149 Sum_probs=26.9
Q ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccc
Q psy8528 70 AAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118 (240)
Q Consensus 70 salIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~k 118 (240)
..||..-..+=.++|| ..-.|+.||+..||+. .|||.+|..|
T Consensus 13 ~~Il~aA~~lf~~~G~-~~~s~~~IA~~aGvs~------~t~Y~~F~sK 54 (210)
T 3vib_A 13 EHLMLAALETFYRKGI-ARTSLNEIAQAAGVTR------DALYWHFKNK 54 (210)
T ss_dssp HHHHHHHHHHHHHHCT-TTCCHHHHHHHHTSCH------HHHHHHCSSH
T ss_pred HHHHHHHHHHHHHhCc-ccCCHHHHHHHHCcCH------HHHHHHCCCH
Confidence 3444433333444686 3445788999999986 5777777654
No 162
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.77 E-value=90 Score=22.74 Aligned_cols=34 Identities=12% Similarity=-0.000 Sum_probs=26.5
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 73 IPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 73 IplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
+.+|...=..+-+-+.+.+..||+.+||+...|-
T Consensus 17 l~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVr 50 (71)
T 2da7_A 17 MSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVK 50 (71)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 4555555556678899999999999999987664
No 163
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=28.55 E-value=50 Score=24.33 Aligned_cols=75 Identities=9% Similarity=0.053 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCChhhHHHHhhhccCCccccCCcccccccccEEEEec-CC---hhhhhcCHHHHHHHHHHHcCc-----
Q psy8528 89 SAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWC-TT---TPCWLRNSDAILEVIKKKCNM----- 159 (240)
Q Consensus 89 ~am~~VA~~L~lp~~~VyeVATFYtmF~~kP~G~~~~~~~~K~~I~VC-~~---t~C~lrGs~~Il~~l~~~LgI----- 159 (240)
++-+.+|+.||.|+.. =++++..--+.-.-|.++ | -..|+|- .+ ..-.-+=+.+|.+.|.+.||+
T Consensus 22 ~~~~~l~~~lgkp~~~--~~v~~~~~~~~~~~g~~~-~---~~~v~i~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~v 95 (115)
T 2xcz_A 22 ELSSKLAELLGKPEKY--VMTSLQCGVPMTFSGNTE-P---TCYVEVKSIGALDGSRTQEVSELVCGHIEQNLGIPADRI 95 (115)
T ss_dssp HHHHHHHHHHTCCGGG--CEEEEECSCCCCBTTBCS-S---CEEEEEEESSCCCTTHHHHHHHHHHHHHHHHHCCCGGGE
T ss_pred HHHHHHHHHHCCChHH--EEEEEECCCceEECCCCC-c---EEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccE
Confidence 3445688999999983 335554443333444322 2 2333332 21 111112256777888889998
Q ss_pred eEeecCCCHH
Q psy8528 160 MLERQDLEPK 169 (240)
Q Consensus 160 mv~y~~Ltpe 169 (240)
+|.+.++.++
T Consensus 96 ~I~~~e~~~~ 105 (115)
T 2xcz_A 96 YIGFEDVPAR 105 (115)
T ss_dssp EEEEEECCGG
T ss_pred EEEEEECCHH
Confidence 5556555554
No 164
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=28.27 E-value=15 Score=28.87 Aligned_cols=44 Identities=11% Similarity=0.193 Sum_probs=29.4
Q ss_pred cccHHHHHHHH-HHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 69 RAAVIPLLDLA-QRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 69 rsalIplL~~a-Q~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
+..|+..+..+ -.+.|| ..-.++.||+..||+. .|||.+|..+-
T Consensus 21 r~~I~~Aa~~lF~~~~g~-~~~tv~~Ia~~Agvs~------~t~Y~~F~~K~ 65 (185)
T 3o60_A 21 QTKLYTVLERFYVEDRTF-ESISIKDLCEQARVSR------ATFYRHHKEII 65 (185)
T ss_dssp HHHHHHHHHHHHHTTCCT-TTCCHHHHHHHHTCCH------HHHHHHCSSTH
T ss_pred HHHHHHHHHHHHHhcCCc-ccCCHHHHHHHhCCCH------HHHHHHcCCHH
Confidence 34455555555 455674 4445788999999986 57888887553
No 165
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=27.70 E-value=26 Score=27.17 Aligned_cols=41 Identities=15% Similarity=0.091 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccc
Q psy8528 71 AVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118 (240)
Q Consensus 71 alIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~k 118 (240)
.+|..-..+=.+.|| ..-.|+.||+..||+.. |||.+|..|
T Consensus 16 ~Il~aA~~lf~~~G~-~~~s~~~IA~~aGvsk~------tlY~hF~sK 56 (200)
T 2hyj_A 16 RILGRAAEIASEEGL-DGITIGRLAEELEMSKS------GVHKHFGTK 56 (200)
T ss_dssp HHHHHHHHHHHHHCG-GGCCHHHHHHHHTCCHH------HHHTTCSSH
T ss_pred HHHHHHHHHHHHcCc-ccCCHHHHHHHhCCChH------HHHHHcCCH
Confidence 344433333344675 34567889999999975 677788543
No 166
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=27.66 E-value=75 Score=24.81 Aligned_cols=24 Identities=4% Similarity=0.052 Sum_probs=19.8
Q ss_pred CCCccccCCHHhHHHHHHHHHhCC
Q psy8528 41 NLDVKFEFTPDNKKRAEAIISIYP 64 (240)
Q Consensus 41 n~~~~f~ft~e~~~~i~~il~~Yp 64 (240)
.....+.++++.+++++++...+.
T Consensus 20 g~~~~W~it~ee~~~y~~iF~~lD 43 (121)
T 3fia_A 20 GSLDTWAITVEERAKHDQQFHSLK 43 (121)
T ss_dssp CCTTTSCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhC
Confidence 333467799999999999999996
No 167
>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A {Curcuma longa} PDB: 3ov3_A
Probab=27.61 E-value=11 Score=34.24 Aligned_cols=54 Identities=19% Similarity=0.390 Sum_probs=38.3
Q ss_pred cCHHHHHHHHHHHcCc----e------Ee-ecCCCHHhHHHHHHHHhcC----CCCCCC---CCCCCCCCcC
Q psy8528 144 RNSDAILEVIKKKCNM----M------LE-RQDLEPKDMEQIIDDLKAG----KKPAPG---PSGYTSGIGS 197 (240)
Q Consensus 144 rGs~~Il~~l~~~LgI----m------v~-y~~Ltpe~i~~IL~~lk~g----~~p~~g---p~g~~~~~~~ 197 (240)
.|...|++.+.++||+ + +. |+++...++--.|+++.+. ...++| -++.+.|+|+
T Consensus 304 q~n~~i~~~v~~~Lgl~~ek~~~s~~~l~~~GNtssAsip~~L~~~~~~~~~~g~~~~G~~~d~vll~~fG~ 375 (393)
T 3ov2_A 304 PGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRSTTGDGLQWGVLLGFGP 375 (393)
T ss_dssp CCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHCBCGGGHHHHHHHHHHHHHHHTTCSBTTTTCSEEEEEEEET
T ss_pred CCChHHHHHHHHHcCCCHHHHHHHHHHHHHhCChHHhHHHHHHHHHHHhhhhcCCcCCCCCCCeEEEEEECc
Confidence 4678899999999998 2 33 9999999998888776542 345666 3344444443
No 168
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans}
Probab=27.60 E-value=25 Score=30.74 Aligned_cols=50 Identities=10% Similarity=0.148 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHcCc-----eEe---ecCCCHHhHHHHHHHHhcCCCCCCCCCCCCCC
Q psy8528 145 NSDAILEVIKKKCNM-----MLE---RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194 (240)
Q Consensus 145 Gs~~Il~~l~~~LgI-----mv~---y~~Ltpe~i~~IL~~lk~g~~p~~gp~g~~~~ 194 (240)
++..+++.+.++||+ ..+ |+++...++--.|+++.+....++|-...+.|
T Consensus 262 ~~~~i~~~~~~~lgl~~~~~~~~l~~~GNt~sasi~~~L~~~~~~g~~~~Gd~vll~~ 319 (333)
T 4dfe_A 262 ANIRIMQSTCRKLGLPQERMIVTVGEHGNTSAASIPLALDVAVRDGRIKRGQNVLIEG 319 (333)
T ss_dssp SCHHHHHHHHHHTTCCGGGBCCCHHHHCBCGGGHHHHHHHHHHHTTCSCTTCEEEEEE
T ss_pred CCHHHHHHHHHHhCCCHHHhhhhHHhcCchHHHHHHHHHHHHHHcCCCCCCCEEEEEE
Confidence 446789999999998 223 99999999998898876555677775333333
No 169
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=27.47 E-value=47 Score=23.92 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=23.1
Q ss_pred HHHHHHHHHH----cCCCCHHHHHHHHHHcCCChhhHHHH
Q psy8528 73 IPLLDLAQRQ----HGWLPISAMHYVADFLNLPKMRVYEV 108 (240)
Q Consensus 73 IplL~~aQ~q----~G~Lp~~am~~VA~~L~lp~~~VyeV 108 (240)
-.||..+++. +|+- ..+++||+.||++.+-|..=
T Consensus 7 ~~IL~~I~~~i~~~~g~~--psv~EIa~~lgvS~~TVrr~ 44 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAP--VKTRDIADAAGLSIYQVRLY 44 (77)
T ss_dssp HHHHHHHHHHHHHHTTSC--EEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCC--cCHHHHHHHHCCCHHHHHHH
Confidence 3455555554 4764 46889999999998776543
No 170
>4ac0_A Tetracycline repressor protein class B from trans TN1 0; transcription; HET: MIY; 2.45A {Escherichia coli}
Probab=27.24 E-value=26 Score=28.35 Aligned_cols=43 Identities=19% Similarity=0.070 Sum_probs=28.9
Q ss_pred cccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccc
Q psy8528 69 RAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118 (240)
Q Consensus 69 rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~k 118 (240)
+..|+..-..+=.+.|| ..-.|+.||+.+|+++. |||.+|..|
T Consensus 5 r~~Il~aA~~l~~~~G~-~~~s~~~IA~~aGvs~~------tlY~~F~~K 47 (202)
T 4ac0_A 5 KSKVINSALELLNEVGI-EGLTTRKLAQKLGVEQP------TLYWHVKNK 47 (202)
T ss_dssp HHHHHHHHHHHHHHHHH-HHCCHHHHHHHHTSCHH------HHHTTCSSH
T ss_pred HHHHHHHHHHHHHhcCc-ccCCHHHHHHHhCCCch------hHHhhcCCH
Confidence 45555555555555674 33357889999999864 788888643
No 171
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=26.80 E-value=1.1e+02 Score=23.94 Aligned_cols=92 Identities=10% Similarity=0.058 Sum_probs=55.4
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH---------HHhh-hccCCccccCCcccccccccEEEEecCChhhhh
Q psy8528 74 PLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY---------EVAT-FYTMFIRKPIGEERIKSILQYHLNWCTTTPCWL 143 (240)
Q Consensus 74 plL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy---------eVAT-FYtmF~~kP~G~~~~~~~~K~~I~VC~~t~C~l 143 (240)
.||+.+|+ .|.+| ...+|+.||++++.|. |++. |...++.+..| .. +.+=-...|.-
T Consensus 7 ~il~~L~~-~~~~s---~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~~lG--------~~-~~a~v~v~v~~ 73 (162)
T 3i4p_A 7 KILRILQE-DSTLA---VADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPVKVN--------TK-VTVFVSIRTAS 73 (162)
T ss_dssp HHHHHHTT-CSCSC---HHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTTTTT--------CC-EEEEEEEECCS
T ss_pred HHHHHHHH-CCCCC---HHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHHHhc--------Cc-EEEEEEEEEcC
Confidence 46777775 46664 5679999999999887 4555 77778888888 22 11111111111
Q ss_pred c---CHHHHHHHHHHHcCc------------eEeecCCCHHhHHHHHHHH
Q psy8528 144 R---NSDAILEVIKKKCNM------------MLERQDLEPKDMEQIIDDL 178 (240)
Q Consensus 144 r---Gs~~Il~~l~~~LgI------------mv~y~~Ltpe~i~~IL~~l 178 (240)
. .-+++.+.+.+.=++ ++...--+.+++.++++++
T Consensus 74 ~~~~~~~~~~~~l~~~peV~~~~~vtG~~D~~l~v~~~d~~~l~~~l~~~ 123 (162)
T 3i4p_A 74 HSIEWLKRFSEVVSEFPEVVEFYRMSGDVDYLLRVVVPDIAAYDAFYKRM 123 (162)
T ss_dssp CCHHHHHHHHHHHHHCTTEEEEEECCSSCSEEEEEEESSHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHhcCCCEEEeeecCCCCCEEEEEEECCHHHHHHHHHHH
Confidence 1 135666666665555 2222224567888888765
No 172
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae}
Probab=26.62 E-value=26 Score=30.80 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=38.1
Q ss_pred cCHHHHHHHHHHHcCc----e-Ee---ecCCCHHhHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy8528 144 RNSDAILEVIKKKCNM----M-LE---RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGI 195 (240)
Q Consensus 144 rGs~~Il~~l~~~LgI----m-v~---y~~Ltpe~i~~IL~~lk~g~~p~~gp~g~~~~~ 195 (240)
.++..+++.+.++||+ + .+ |+++...++--.|+++.+....++|-...+.|+
T Consensus 251 q~~~~i~~~~~~~lgl~~ek~~~~l~~~GNt~sasi~~~L~~~~~~g~~~~Gd~vll~~~ 310 (323)
T 3il3_A 251 QANLRIITATAKKLEMDMSQVVVTLDKYANNSAATVPVALDEAIRDGRIQRGQLLLLEAF 310 (323)
T ss_dssp CSCHHHHHHHHHHTTCCGGGBCCCHHHHCBCGGGHHHHHHHHHHHTTSSCTTCEEEEEEE
T ss_pred CCCHHHHHHHHHHcCcCHHHhhccHhhcCchHHHHHHHHHHHHHHcCCCCCCCEEEEEEE
Confidence 3457899999999998 2 23 999999999999988765556777753333333
No 173
>3v7i_A Putative polyketide synthase; type III polyketide synthase, acyltransferase, transferase,; 2.90A {Streptomyces coelicolor}
Probab=26.51 E-value=15 Score=33.98 Aligned_cols=53 Identities=8% Similarity=0.092 Sum_probs=42.7
Q ss_pred cCHHHHHHHHHHHcC--c----e---E-e--ecCCCHHhHHHHHHHHhcCCCCCCCCCCCCCCCcC
Q psy8528 144 RNSDAILEVIKKKCN--M----M---L-E--RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGS 197 (240)
Q Consensus 144 rGs~~Il~~l~~~Lg--I----m---v-~--y~~Ltpe~i~~IL~~lk~g~~p~~gp~g~~~~~~~ 197 (240)
.|+..|++.++++|| + + . + |+++...++--.|+++.+| ..++|-++.+.|+|+
T Consensus 337 q~~~~il~~v~~~Lg~~l~~ek~~~s~~~l~~GNtssAsi~~~L~~~~~~-~~~~Gd~vll~~fG~ 401 (413)
T 3v7i_A 337 PGGTRVLEYMEQTMPDEWPSGLLSYSRDSYTSGNRGGAAVFDILRRAHDA-GQKTGSRAVLYAAAP 401 (413)
T ss_dssp CSSHHHHHHHHHHSCSSCCSCSTHHHHHHHTTCBCGGGHHHHHHHHHHHH-CCCTTCEEEEEEEET
T ss_pred CCChHHHHHHHHHhCCCCCHHHhhccceEeceeChHHHHHHHHHHHHHhC-CCCCCCEEEEEEECH
Confidence 577899999999999 7 2 1 1 9999999999999998744 567887777777665
No 174
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=26.08 E-value=29 Score=27.68 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=28.5
Q ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 70 AAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 70 salIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
..||..-..+=.+.|| ..-.|+.||+..|++.. |||.+|..|-
T Consensus 19 ~~il~aA~~l~~~~G~-~~~s~~~IA~~agvs~~------t~Y~~F~~K~ 61 (216)
T 2oi8_A 19 AEIKDHAWEQIATAGA-SALSLNAIAKRMGMSGP------ALYRYFDGRD 61 (216)
T ss_dssp HHHHHHHHHHHHHHCT-TSCCHHHHHHHTTCCHH------HHHTTCSSHH
T ss_pred HHHHHHHHHHHHhcCc-ccCCHHHHHHHhCCCHH------HHHHHcCCHH
Confidence 3444444444455675 33457889999999875 7888887554
No 175
>1z67_A Hypothetical protein S4005; structural genomics, shigella flexneri protein structure initiative, midwest center for structural genomics; 1.45A {Shigella flexneri 2A} SCOP: a.259.1.1
Probab=25.81 E-value=66 Score=26.00 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCChhhHHHHhhhc-cC-C-ccccCC
Q psy8528 88 ISAMHYVADFLNLPKMRVYEVATFY-TM-F-IRKPIG 121 (240)
Q Consensus 88 ~~am~~VA~~L~lp~~~VyeVATFY-tm-F-~~kP~G 121 (240)
.+.++.+|+.+|+++.+++...+-| +. . +..|-|
T Consensus 75 ~~~l~~lA~q~Gl~~~~~~~~LA~~LP~~VD~lTP~G 111 (135)
T 1z67_A 75 TNAVSDLGQKLGVDTSTASSLLAEQLPKIIDALSPQG 111 (135)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred hHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhccCcCC
Confidence 7789999999999999999887665 22 2 346777
No 176
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=25.65 E-value=77 Score=24.80 Aligned_cols=76 Identities=14% Similarity=0.205 Sum_probs=39.4
Q ss_pred cceeeccCCCCCCCCccccCCHHhHHHHHHH----HHhCCCCCCcccHHHHHHHHHHHcC----CCCHH-----------
Q psy8528 29 DALFVHRDTKDDNLDVKFEFTPDNKKRAEAI----ISIYPVGHERAAVIPLLDLAQRQHG----WLPIS----------- 89 (240)
Q Consensus 29 ~~~~~h~~t~~~n~~~~f~ft~e~~~~i~~i----l~~Yp~~~~rsalIplL~~aQ~q~G----~Lp~~----------- 89 (240)
+.++=|-|+ ++.... .=|+.+..+-++ |.++.- ....++.++..+|+.+| |||..
T Consensus 12 ~~~~~~l~~-~~~~~~---~~Pe~L~el~~~ig~~L~~~Gi--~~~~~ie~~~~L~~~~gG~~iYIPk~~~~~~~~Rn~~ 85 (129)
T 1rr7_A 12 DTILAHLDN-PAEDTS---RFPALLAELNDLLRGELSRLGV--DPAHSLEIVVAICKHLGGGQVYIPRGQALDSLIRDLR 85 (129)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHTSS--CTTSHHHHHHHHHHHHCSSCCCCCCSHHHHHHHHHHH
T ss_pred hHHHHHhcC-hHHHHH---HhHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHCCeeEEeeCCchHHHHHHHHH
Confidence 456667776 222211 224555444443 334432 22444499999999985 88872
Q ss_pred --------HHHHHHHHcCCChhhHHHHhh
Q psy8528 90 --------AMHYVADFLNLPKMRVYEVAT 110 (240)
Q Consensus 90 --------am~~VA~~L~lp~~~VyeVAT 110 (240)
.+.++|+..+++.-.||.+..
T Consensus 86 I~~~f~G~n~~eLArkYgLSer~I~~Ii~ 114 (129)
T 1rr7_A 86 IWNDFNGRNVSELTTRYGVTFNTVYKAIR 114 (129)
T ss_dssp HHHHCCSSCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 356788888888888888764
No 177
>4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665}
Probab=25.32 E-value=20 Score=31.42 Aligned_cols=53 Identities=11% Similarity=0.238 Sum_probs=38.7
Q ss_pred cCHHHHHHHHHHHcCc----eE--e---ecCCCHHhHHHHHHHHhcCCCCCCCCCCCCCCCc
Q psy8528 144 RNSDAILEVIKKKCNM----ML--E---RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIG 196 (240)
Q Consensus 144 rGs~~Il~~l~~~LgI----mv--~---y~~Ltpe~i~~IL~~lk~g~~p~~gp~g~~~~~~ 196 (240)
.++..+++.+.++||+ ++ + |+++...++--.|+++.+....++|-...+.|+|
T Consensus 276 q~~~~i~~~~~~~Lgl~~~~~~~~~l~~~GNtssasi~~~L~~~~~~g~~~~Gd~vll~~fG 337 (350)
T 4ewp_A 276 QANMRIIDEFAKQLKLPESVVVARDIADAGNTSAASIPLAMHRLLEENPELSGGLALQIGFG 337 (350)
T ss_dssp CSCHHHHHHHHHHTTCCTTSEECCTHHHHCBCGGGHHHHHHHHHHHHCGGGTTSEEEEEEEE
T ss_pred CCCHHHHHHHHHHcCcChHhEEecccccccchHHHHHHHHHHHHHHhCCCCCcCEEEEEEEc
Confidence 5678899999999998 22 2 9999999999888876544456677544444444
No 178
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.03 E-value=99 Score=22.10 Aligned_cols=73 Identities=11% Similarity=0.149 Sum_probs=45.5
Q ss_pred HHHHHHHHcCCChhhHHHHhhhccCCccccCCcccccccccEEEEecCChhhhhcCHHHHHHHHHHHcCceEe----ecC
Q psy8528 90 AMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLE----RQD 165 (240)
Q Consensus 90 am~~VA~~L~lp~~~VyeVATFYtmF~~kP~G~~~~~~~~K~~I~VC~~t~C~lrGs~~Il~~l~~~LgImv~----y~~ 165 (240)
..+.+++.+++++.+|..=.+|+.-+-.. .-..-+|+..|++++|+.|. +..
T Consensus 20 l~~~l~~~l~~~~~~i~~d~~l~~dlG~D------------------------SL~~vel~~~le~~fgi~i~~~~l~~~ 75 (99)
T 2dnw_A 20 VLYVLKLYDKIDPEKLSVNSHFMKDLGLD------------------------SLDQVEIIMAMEDEFGFEIPDIDAEKL 75 (99)
T ss_dssp HHHHHHHCTTSCTTTCCTTCCCCCCCCCC------------------------HHHHHHHHHHHHHHTTCCCCHHHHTTC
T ss_pred HHHHHHHHhCCCHhhCCCCCchhhhcCCC------------------------HHHHHHHHHHHHHHHCCCCCHHHHHhC
Confidence 44567777777776665555544222111 13457889999999999655 556
Q ss_pred CCHHhHHHHHHHHhcCCCCCCCC
Q psy8528 166 LEPKDMEQIIDDLKAGKKPAPGP 188 (240)
Q Consensus 166 Ltpe~i~~IL~~lk~g~~p~~gp 188 (240)
-|..++.+.|.+..+. ...||
T Consensus 76 ~Tv~~l~~~i~~~~~~--~~~~p 96 (99)
T 2dnw_A 76 MCPQEIVDYIADKKDV--YESGP 96 (99)
T ss_dssp CSHHHHHHHHHHHCCS--CSCSC
T ss_pred CCHHHHHHHHHHHhcc--cccCC
Confidence 6778887777765432 33466
No 179
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=24.81 E-value=28 Score=27.44 Aligned_cols=51 Identities=12% Similarity=0.190 Sum_probs=31.2
Q ss_pred HHHhCCC-CCCcccHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCChhhHHHHhh
Q psy8528 59 IISIYPV-GHERAAVIPLLDLAQRQH-GWLPISAMHYVADFLNLPKMRVYEVAT 110 (240)
Q Consensus 59 il~~Yp~-~~~rsalIplL~~aQ~q~-G~Lp~~am~~VA~~L~lp~~~VyeVAT 110 (240)
+|..|.. +=...-++-+|++..-.. | .+....+.||+.+++++.+|..+..
T Consensus 21 LL~~y~~LgLs~~E~~lLl~L~~~~~~g-~~~ps~~~LA~~~~~s~~~v~~~L~ 73 (135)
T 2v79_A 21 LLTHYKQLGLNETELILLLKIKMHLEKG-SYFPTPNQLQEGMSISVEECTNRLR 73 (135)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTTT-CCSCCHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4455532 223444555555554332 3 2444456899999999999998764
No 180
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=24.68 E-value=50 Score=30.63 Aligned_cols=44 Identities=9% Similarity=0.086 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCc
Q psy8528 72 VIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFI 116 (240)
Q Consensus 72 lIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~ 116 (240)
+.-.|...+..|| |+++.++.||+.+|+|..++..+..--.++.
T Consensus 309 ~~~~l~~~~~~FG-ld~~sl~~~a~~~~~~~~~~~~~~~s~~~~~ 352 (413)
T 1tq4_A 309 LKKSMKFYRTVFG-VDETSLQRLARDWEIEVDQVEAMIKSPAVFK 352 (413)
T ss_dssp HHHHHHHHHHHTT-CSHHHHHHHHSSSSSCHHHHHHTCSHHHHTS
T ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHhCCCHHHHHHHHhChhhcc
Confidence 4456677778888 9999999999999999999999987654444
No 181
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=24.62 E-value=27 Score=26.47 Aligned_cols=75 Identities=11% Similarity=0.095 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCChhhHHHHhhhccCCccccCCcccccccccEEEEec-CC-hh--hhhcCHHHHHHHHHHHcCc----
Q psy8528 88 ISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWC-TT-TP--CWLRNSDAILEVIKKKCNM---- 159 (240)
Q Consensus 88 ~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP~G~~~~~~~~K~~I~VC-~~-t~--C~lrGs~~Il~~l~~~LgI---- 159 (240)
.++-+.+|+.||.|.. |=+++|..--.+-.-|.++ | -..|.|- .+ .. =.-+=+.+|.+.|.+.||+
T Consensus 21 ~~l~~ala~~lgkPe~--~~~V~~~~~~~~~~gg~~d-p---~~~v~I~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~ 94 (125)
T 2wkb_A 21 SEIEDAISNILGKPVA--YIMSNYDYQKNLRFSGSNE-G---YCFVRLTSIGGINRSNNSLLADKITKILSNHLSVKPRR 94 (125)
T ss_dssp HHHHHHHHHHHCSCCT--TCEEEEEECTTCEETTBCS-S---CEEEEEECC-----CTHHHHHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHhCCCHH--HEEEEEEcCCceEeCCCCC-C---cEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcce
Confidence 4455678999999999 5567776443333334222 2 2334443 11 11 0111256777888889998
Q ss_pred -eEeecCCCH
Q psy8528 160 -MLERQDLEP 168 (240)
Q Consensus 160 -mv~y~~Ltp 168 (240)
+|.+.++.+
T Consensus 95 v~I~~~e~~~ 104 (125)
T 2wkb_A 95 VYIEFRDCSA 104 (125)
T ss_dssp EEEEEEC---
T ss_pred EEEEEEECCH
Confidence 555555444
No 182
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=24.51 E-value=67 Score=23.55 Aligned_cols=22 Identities=0% Similarity=0.092 Sum_probs=18.8
Q ss_pred ccccCCHHhHHHHHHHHHhCCC
Q psy8528 44 VKFEFTPDNKKRAEAIISIYPV 65 (240)
Q Consensus 44 ~~f~ft~e~~~~i~~il~~Yp~ 65 (240)
..+.++++..++++++...|..
T Consensus 4 ~~w~ls~~~~~~l~~~F~~~D~ 25 (111)
T 2kgr_A 4 AEWAVPQSSRLKYRQLFNSHDK 25 (111)
T ss_dssp CCSSSCHHHHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHHHHCC
Confidence 4678899999999999999964
No 183
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=24.09 E-value=1.3e+02 Score=21.81 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=22.8
Q ss_pred ecCCCHHhHHHHHHHHhcCCCCCCCC
Q psy8528 163 RQDLEPKDMEQIIDDLKAGKKPAPGP 188 (240)
Q Consensus 163 y~~Ltpe~i~~IL~~lk~g~~p~~gp 188 (240)
.+.++.+++.+.|+++.....+.+||
T Consensus 109 ~G~~~~~~l~~~l~~~~~~~~~~~~~ 134 (136)
T 2l5l_A 109 QGAMPKASFKKAIDEFLLKKEGHHHH 134 (136)
T ss_dssp ESCCCHHHHHHHHHHHHTSCTTSSCS
T ss_pred eCCCCHHHHHHHHHHHhhccCCCCCC
Confidence 67789999999999998888888887
No 184
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=23.84 E-value=51 Score=24.04 Aligned_cols=21 Identities=14% Similarity=0.370 Sum_probs=17.4
Q ss_pred HHHHHHHcCCChhhHHHHhhh
Q psy8528 91 MHYVADFLNLPKMRVYEVATF 111 (240)
Q Consensus 91 m~~VA~~L~lp~~~VyeVATF 111 (240)
+..+|+.|+++..+|+.+++.
T Consensus 33 l~~La~ll~ls~~~vE~~ls~ 53 (84)
T 1ufm_A 33 FEELGALLEIPAAKAEKIASQ 53 (84)
T ss_dssp HHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 567889999999999888764
No 185
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=23.76 E-value=92 Score=27.48 Aligned_cols=44 Identities=9% Similarity=0.049 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCC--CCCcccHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy8528 53 KKRAEAIISIYPV--GHERAAVIPLLDLAQRQHGWLPISAMHYVAD 96 (240)
Q Consensus 53 ~~~i~~il~~Yp~--~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~ 96 (240)
.+.|.+++.++|. +.....+-|-+..+|+..|+=+.+++..|+.
T Consensus 178 ~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~~ 223 (343)
T 3mva_O 178 ADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICG 223 (343)
T ss_dssp HHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHHHHT
T ss_pred HHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 3467888899986 3446788899999999999888788777764
No 186
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=23.54 E-value=84 Score=23.56 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=24.4
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHH------------------cC---CChhhHH
Q psy8528 74 PLLDLAQRQHGWLPISAMHYVADF------------------LN---LPKMRVY 106 (240)
Q Consensus 74 plL~~aQ~q~G~Lp~~am~~VA~~------------------L~---lp~~~Vy 106 (240)
.+|...=+..-|.+...-+.||+. || |+..+|+
T Consensus 22 ~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~ 75 (99)
T 1lfb_A 22 QILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVY 75 (99)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceee
Confidence 334333334558999999999999 88 9999985
No 187
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A
Probab=23.25 E-value=25 Score=30.95 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHcCc----e-Ee---ecCCCHHhHHHHHHHHhcCCCCCCCCCCCCCCCc
Q psy8528 145 NSDAILEVIKKKCNM----M-LE---RQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIG 196 (240)
Q Consensus 145 Gs~~Il~~l~~~LgI----m-v~---y~~Ltpe~i~~IL~~lk~g~~p~~gp~g~~~~~~ 196 (240)
++..+++.+.++||+ + .+ |+++...++--.|+++.+....++|-...+.|+|
T Consensus 274 ~~~~i~~~~~~~lgl~~ek~~~~l~~~GNt~sasi~~~L~~~~~~g~~~~Gd~vll~~~G 333 (345)
T 3s21_A 274 VSRPHTAAFVKSFGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIG 333 (345)
T ss_dssp SCHHHHHHHHHHHTCCGGGBCCCHHHHCBCGGGHHHHHHHHHHHHTCCCTTCEEEEEEEE
T ss_pred CCHHHHHHHHHHcCcCHHHceeeHhhcCchHHHHHHHHHHHHHHcCCCCCCCEEEEEEEC
Confidence 557789999999998 2 22 9999999999888876544457777644444444
No 188
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=23.11 E-value=47 Score=19.95 Aligned_cols=21 Identities=10% Similarity=0.064 Sum_probs=17.0
Q ss_pred HHHHHHHcCCChhhHHHHhhh
Q psy8528 91 MHYVADFLNLPKMRVYEVATF 111 (240)
Q Consensus 91 m~~VA~~L~lp~~~VyeVATF 111 (240)
+.+||+.||++..-||....-
T Consensus 24 ~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 24 RQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHHHTTSCCHHHHHHHSCT
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 578999999999988876543
No 189
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=22.89 E-value=1.9e+02 Score=25.07 Aligned_cols=37 Identities=16% Similarity=0.119 Sum_probs=29.3
Q ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHH
Q psy8528 70 AAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 70 salIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
...+..|...=+.+.|++......+|..+||+..+|.
T Consensus 374 ~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~ 410 (421)
T 1mh3_A 374 PQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVR 410 (421)
T ss_dssp HHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred chHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhh
Confidence 3445555555566789999999999999999999985
No 190
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=22.79 E-value=65 Score=23.94 Aligned_cols=33 Identities=12% Similarity=0.038 Sum_probs=24.5
Q ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChh
Q psy8528 68 ERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKM 103 (240)
Q Consensus 68 ~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~ 103 (240)
..+.+|.++ ++.+|.=-.+|++++|+.+|++..
T Consensus 66 ~gGd~i~fv---~~~~~~sf~eA~~~La~~~gi~~~ 98 (103)
T 1d0q_A 66 AGGNAFTFL---MDIEGIPFVEAAKRLAAKAGVDLS 98 (103)
T ss_dssp CEECHHHHH---HHHHTCCHHHHHHHHHHHHTCCCG
T ss_pred CCCCHHHHH---HHHhCCCHHHHHHHHHHHhCCCCC
Confidence 455565554 555676679999999999999864
No 191
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=22.58 E-value=52 Score=22.23 Aligned_cols=20 Identities=10% Similarity=0.267 Sum_probs=17.3
Q ss_pred HHHHHHHcCCChhhHHHHhh
Q psy8528 91 MHYVADFLNLPKMRVYEVAT 110 (240)
Q Consensus 91 m~~VA~~L~lp~~~VyeVAT 110 (240)
+.+||+.||++.+.||..+.
T Consensus 13 ~~eva~~lgvsrstiy~~~~ 32 (66)
T 1z4h_A 13 LKFIMADTGFGKTFIYDRIK 32 (66)
T ss_dssp HHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 46799999999999998875
No 192
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=22.50 E-value=98 Score=20.99 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHcCCChhhHHH
Q psy8528 84 GWLPISAMHYVADFLNLPKMRVYE 107 (240)
Q Consensus 84 G~Lp~~am~~VA~~L~lp~~~Vye 107 (240)
..++.+.+..||+.||+++..+.+
T Consensus 49 ~~p~~~~l~~ia~~l~v~~~~l~~ 72 (78)
T 3qq6_A 49 TNPSIQFLEKVSAVLDVSVHTLLD 72 (78)
T ss_dssp CCCBHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHCcCHHHHhC
Confidence 478999999999999999887754
No 193
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=22.45 E-value=48 Score=25.04 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=31.0
Q ss_pred CCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCccc
Q psy8528 67 HERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRK 118 (240)
Q Consensus 67 ~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~k 118 (240)
+.+..+|..-..+=.++|| ..-.|+.||+..|++.. |||.+|..|
T Consensus 7 ~~~~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~------tlY~~F~sK 51 (192)
T 2zcm_A 7 HMKDKIIDNAITLFSEKGY-DGTTLDDISKSVNIKKA------SLYYHYDNK 51 (192)
T ss_dssp -CHHHHHHHHHHHHHHHCT-TTCCHHHHHHHTTCCHH------HHHHHTCCH
T ss_pred hhHHHHHHHHHHHHHHcCc-ccCCHHHHHHHhCCChH------HHHHHCCCH
Confidence 4566666666666667786 44567889999999875 666666543
No 194
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=22.36 E-value=94 Score=20.80 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHcCCChhhHHH
Q psy8528 85 WLPISAMHYVADFLNLPKMRVYE 107 (240)
Q Consensus 85 ~Lp~~am~~VA~~L~lp~~~Vye 107 (240)
-++.+.+..||+.|++++..+++
T Consensus 50 ~~~~~~l~~ia~~l~v~~~~l~~ 72 (82)
T 3s8q_A 50 NLTIKSLELIMKGLEVSDVVFFE 72 (82)
T ss_dssp CCBHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHCcCHHHHhc
Confidence 78999999999999999988764
No 195
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=22.30 E-value=52 Score=24.57 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=35.3
Q ss_pred hhhhhcCHHHHHHHHHHHcCceEeecCCCHHhHHHHHHHHh
Q psy8528 139 TPCWLRNSDAILEVIKKKCNMMLERQDLEPKDMEQIIDDLK 179 (240)
Q Consensus 139 t~C~lrGs~~Il~~l~~~LgImv~y~~Ltpe~i~~IL~~lk 179 (240)
.|-...-+.+|.+.|++.--++||.++|+.+....|+|=+.
T Consensus 11 ~P~sy~Da~~I~d~Lr~~~~VvvNL~~ld~~~AqRivDF~s 51 (87)
T 3p04_A 11 ELHSFEDAQVIGGAFRDGDAVVFDMSLLSREEARRIVDFAA 51 (87)
T ss_dssp ECSSGGGHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred ecCcHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHhc
Confidence 45566788999999999888899999999999999998654
No 196
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=22.25 E-value=52 Score=21.63 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHcCCChhhHHHHh
Q psy8528 85 WLPISAMHYVADFLNLPKMRVYEVA 109 (240)
Q Consensus 85 ~Lp~~am~~VA~~L~lp~~~VyeVA 109 (240)
-++.+.+..||+.||+++..+++-.
T Consensus 47 ~~~~~~l~~ia~~l~~~~~~l~~~~ 71 (78)
T 3b7h_A 47 RPTITTIRKVCGTLGISVHDFFDFP 71 (78)
T ss_dssp CCCHHHHHHHHHHHTCCHHHHTCST
T ss_pred CCCHHHHHHHHHHcCCCHHHHhcCC
Confidence 5789999999999999998876543
No 197
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=22.21 E-value=66 Score=20.74 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHcCCChhhH
Q psy8528 85 WLPISAMHYVADFLNLPKMRV 105 (240)
Q Consensus 85 ~Lp~~am~~VA~~L~lp~~~V 105 (240)
-++.+.+..+|+.||+++..+
T Consensus 49 ~~~~~~l~~la~~l~v~~~~l 69 (71)
T 2ewt_A 49 AVTVQRLAELADFYGVPVQEL 69 (71)
T ss_dssp CCCHHHHHHHHHHHTSCGGGG
T ss_pred CCCHHHHHHHHHHHCcCHHHH
Confidence 577888888888888887654
No 198
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=22.15 E-value=2.4e+02 Score=20.70 Aligned_cols=75 Identities=9% Similarity=0.028 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCChhhHHHHhhhccCCccccCCcccccccccEEEEecCChhhhhcCHHHHHHHHHHHcCceEe----ec
Q psy8528 89 SAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLE----RQ 164 (240)
Q Consensus 89 ~am~~VA~~L~lp~~~VyeVATFYtmF~~kP~G~~~~~~~~K~~I~VC~~t~C~lrGs~~Il~~l~~~LgImv~----y~ 164 (240)
...+.+++.|++++.+|-.=.+|+.-+-.. .-..-+|+..|++++|+-|. +.
T Consensus 11 ~l~~il~~~l~~~~~~i~~d~~l~~dlG~D------------------------SL~~vel~~~lE~~fgi~i~~~~l~~ 66 (115)
T 1klp_A 11 GIAEIIEEVTGIEPSEITPEKSFVDDLDID------------------------SLSMVEIAVQTEDKYGVKIPDEDLAG 66 (115)
T ss_dssp HHHHHHHHHTCCCTTTCCTTCCTTTTTCSH------------------------HHHHHHHHHHHHHHTCCCCCHHHHTT
T ss_pred HHHHHHHHHhCcCHHhCCCCCchhhccCCC------------------------HHHHHHHHHHHHHHHCCCCCHHHHHc
Confidence 345677888888876665555554322211 13456888899999999655 66
Q ss_pred CCCHHhHHHHHHHHhcCCCCCCC
Q psy8528 165 DLEPKDMEQIIDDLKAGKKPAPG 187 (240)
Q Consensus 165 ~Ltpe~i~~IL~~lk~g~~p~~g 187 (240)
.-|..++.+.|....++...++.
T Consensus 67 ~~Tv~~l~~~i~~~~~~~~~~~~ 89 (115)
T 1klp_A 67 LRTVGDVVAYIQKLEEENPEAAQ 89 (115)
T ss_dssp CCSHHHHHHHHHHHHSSCTTSCS
T ss_pred CCCHHHHHHHHHHHHccccCchH
Confidence 67888888888877765433333
No 199
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=21.99 E-value=72 Score=20.85 Aligned_cols=23 Identities=13% Similarity=0.406 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHcCCChhhHHH
Q psy8528 85 WLPISAMHYVADFLNLPKMRVYE 107 (240)
Q Consensus 85 ~Lp~~am~~VA~~L~lp~~~Vye 107 (240)
-++.+.+..+|+.||+++..+.+
T Consensus 49 ~~~~~~l~~la~~l~~~~~~l~~ 71 (77)
T 2b5a_A 49 NISLINIHKICAALDIPASTFFR 71 (77)
T ss_dssp CCBHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCHHHHHHHHHHhCcCHHHHhc
Confidence 67889999999999999988765
No 200
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=21.39 E-value=51 Score=27.05 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHcCCChhhHHHHhhh
Q psy8528 84 GWLPISAMHYVADFLNLPKMRVYEVATF 111 (240)
Q Consensus 84 G~Lp~~am~~VA~~L~lp~~~VyeVATF 111 (240)
.||+ +.+||+.||++.++||..+.=
T Consensus 30 ~~LT---v~EVAe~LgVs~srV~~LIr~ 54 (148)
T 2kfs_A 30 PTYD---LPRVAELLGVPVSKVAQQLRE 54 (148)
T ss_dssp CEEE---HHHHHHHHTCCHHHHHHHHHT
T ss_pred ceEc---HHHHHHHhCCCHHHHHHHHHC
Confidence 4555 467999999999999987654
No 201
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=21.31 E-value=76 Score=20.02 Aligned_cols=22 Identities=5% Similarity=-0.183 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHHHcCCChhhHH
Q psy8528 85 WLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 85 ~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
-.+.+.+..+|+.||+++..+.
T Consensus 44 ~~~~~~l~~i~~~l~~~~~~l~ 65 (68)
T 2r1j_L 44 EPNGENLLALSKALQCSPDYLL 65 (68)
T ss_dssp CCBHHHHHHHHHHTTSCHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHh
Confidence 5678899999999999988764
No 202
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=21.20 E-value=76 Score=20.49 Aligned_cols=22 Identities=9% Similarity=0.214 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHcCCChhhHH
Q psy8528 85 WLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 85 ~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
.++.+.+..+|+.||+++..++
T Consensus 52 ~~~~~~l~~l~~~l~~~~~~l~ 73 (74)
T 1y7y_A 52 NVSLVNILKLATALDIEPRELF 73 (74)
T ss_dssp CCBHHHHHHHHHHTTSCGGGGC
T ss_pred CCCHHHHHHHHHHhCcCHHHHc
Confidence 5778888888888888877653
No 203
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=21.07 E-value=64 Score=24.73 Aligned_cols=43 Identities=23% Similarity=0.179 Sum_probs=30.9
Q ss_pred cccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 69 RAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 69 rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
+..||..-..+=.++|| . -.|+.||+..|++.. |||.+|..|-
T Consensus 15 r~~Il~aA~~lf~~~G~-~-~t~~~IA~~agvs~~------tlY~~F~sK~ 57 (196)
T 2qwt_A 15 RARVLEVAYDTFAAEGL-G-VPMDEIARRAGVGAG------TVYRHFPTKQ 57 (196)
T ss_dssp HHHHHHHHHHHHHHTCT-T-SCHHHHHHHTTSCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHHhcCC-C-CCHHHHHHHhCCCHH------HHHHHCCCHH
Confidence 34555555555566797 4 799999999999874 6777776543
No 204
>3eeq_A Putative cobalamin biosynthesis protein G homolog; structural genomics, unknown function, PSI-2, protein structure initiative; 2.30A {Sulfolobus solfataricus} SCOP: c.151.1.1 c.152.1.1
Probab=21.07 E-value=1.1e+02 Score=27.72 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=43.3
Q ss_pred cEEEEecCChhhhhcCHHHHHHHHHHHcCc--------------eEe-------ecCCCHHhHHHHHHHHhcCCCC
Q psy8528 130 QYHLNWCTTTPCWLRNSDAILEVIKKKCNM--------------MLE-------RQDLEPKDMEQIIDDLKAGKKP 184 (240)
Q Consensus 130 K~~I~VC~~t~C~lrGs~~Il~~l~~~LgI--------------mv~-------y~~Ltpe~i~~IL~~lk~g~~p 184 (240)
+|.|-+..| |+ |+.+|-..+-+.||. -++ +.-.+++++.++...+-+|+++
T Consensus 92 ~~vIpLLsG---H~-GAN~LA~~IA~~lga~pVITTAtD~~g~~avD~la~~~g~~i~~~~~~k~v~a~ll~g~~v 163 (336)
T 3eeq_A 92 NYVIPLLGG---HW-GANDIARELSVILNSTPIITTAAEIKGKLSIERIANILIAKIINPENIVKINAALLRDESI 163 (336)
T ss_dssp CEEEEEECT---TT-THHHHHHHHHHHTTCEECCC-------CCCHHHHHHHTTEEESCGGGHHHHHHHHHTTCCE
T ss_pred CEEEEeccC---ch-hHHHHHHHHHHHhCCEEEEeCchhhcCCcchhhhhHhcCCEEcCHHHHHHHHHHHHCCCee
Confidence 999999999 67 999999999999997 111 4445689999999999999875
No 205
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=21.01 E-value=86 Score=23.85 Aligned_cols=22 Identities=9% Similarity=0.076 Sum_probs=19.0
Q ss_pred HHHHHHHHcCCChhhHHHHhhh
Q psy8528 90 AMHYVADFLNLPKMRVYEVATF 111 (240)
Q Consensus 90 am~~VA~~L~lp~~~VyeVATF 111 (240)
....||+.++++...|..+...
T Consensus 53 s~~~LA~~l~~s~~~V~~~l~~ 74 (128)
T 2vn2_A 53 TPAELAERMTVSAAECMEMVRR 74 (128)
T ss_dssp CHHHHHHTSSSCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 5677999999999999988764
No 206
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=20.94 E-value=33 Score=29.74 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=33.2
Q ss_pred HHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCC
Q psy8528 50 PDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLP 101 (240)
Q Consensus 50 ~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp 101 (240)
++.+.+++.++..-. .+++.-|..+.++-=..|||+.+.+..+|+.|.=+
T Consensus 230 ~edl~~a~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (295)
T 1lvw_A 230 HDGLLEASSFIETIQ--KRQGFYIACLEEIAYNNGWITREDVLEMAEKLEKT 279 (295)
T ss_dssp HHHHHHHHHHHHHHH--HHHCCCSSCHHHHHHHTTSSCHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHH--HhCCceecchhHHHHHcCCCCHHHHHHHHHHhcCC
Confidence 555555555554432 13344455566666668999999999999998654
No 207
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=20.83 E-value=53 Score=20.70 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=16.4
Q ss_pred HHHHHHHHcCCChhhHHHHh
Q psy8528 90 AMHYVADFLNLPKMRVYEVA 109 (240)
Q Consensus 90 am~~VA~~L~lp~~~VyeVA 109 (240)
...+||+.||+++..|+...
T Consensus 33 s~~eIA~~lgis~~TV~~~l 52 (55)
T 2x48_A 33 TVQQIANALGVSERKVRRYL 52 (55)
T ss_dssp CHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHH
Confidence 46689999999999988653
No 208
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=20.78 E-value=83 Score=22.30 Aligned_cols=19 Identities=16% Similarity=0.051 Sum_probs=15.4
Q ss_pred HHHHHHHcCCChhhHHHHh
Q psy8528 91 MHYVADFLNLPKMRVYEVA 109 (240)
Q Consensus 91 m~~VA~~L~lp~~~VyeVA 109 (240)
+.++|+.||+++.-|+--.
T Consensus 13 ~~~lA~~lGVs~~aVs~W~ 31 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWL 31 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHH
Confidence 7788888888888887664
No 209
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=20.77 E-value=1.3e+02 Score=21.70 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=19.0
Q ss_pred CCccccCCHHhHHHHHHHHHhCCC
Q psy8528 42 LDVKFEFTPDNKKRAEAIISIYPV 65 (240)
Q Consensus 42 ~~~~f~ft~e~~~~i~~il~~Yp~ 65 (240)
......++++..+++.++...+..
T Consensus 11 ~~~~~~l~~~~~~~l~~~F~~~D~ 34 (161)
T 3fwb_A 11 GPLNSELLEEQKQEIYEAFSLFDM 34 (161)
T ss_dssp TTTTTTSCHHHHHHHHHHHHHHCT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC
Confidence 344557899999999999999864
No 210
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=20.72 E-value=1.2e+02 Score=20.02 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=37.8
Q ss_pred cCCHHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHH---HhhhccCCccccCC
Q psy8528 47 EFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE---VATFYTMFIRKPIG 121 (240)
Q Consensus 47 ~ft~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~Vye---VATFYtmF~~kP~G 121 (240)
.++++..++++++...|..+ ..|+|+.+-+..+-..+|..+..- + +...+..+.....|
T Consensus 7 ~l~~~~~~~l~~~F~~~D~d---------------~~G~I~~~el~~~l~~~g~~~~~~-~~~~~~~~~~~~d~~~~g 68 (86)
T 1j7q_A 7 ALGPEEKDECMKIFDIFDRN---------------AENIAPVSDTMDMLTKLGQTYTKR-ETEAIMKEARGPKGDKKN 68 (86)
T ss_dssp CCSSTHHHHHHHHHHHHSTT---------------TTSCBCHHHHHHHHHHTSCCCSHH-HHHHHHHHHHCSSCSSCC
T ss_pred cCCHHHHHHHHHHHHHhCCC---------------CCCcCcHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhCCCCCC
Confidence 46778888888888888632 247788887777777777654432 2 44444455444444
No 211
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=20.68 E-value=37 Score=25.89 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=30.7
Q ss_pred cccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHhhhccCCcccc
Q psy8528 69 RAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKP 119 (240)
Q Consensus 69 rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVATFYtmF~~kP 119 (240)
+..|+..-..+=.++|| . -.|+.||+..||+.. |||.+|..|-
T Consensus 18 r~~Il~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~------t~Y~~F~sK~ 60 (199)
T 2rek_A 18 YDRIIEAAAAEVARHGA-D-ASLEEIARRAGVGSA------TLHRHFPSRW 60 (199)
T ss_dssp HHHHHHHHHHHHHHHGG-G-CCHHHHHHHHTCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHHhcCC-C-CCHHHHHHHhCCchH------HHHHHCCCHH
Confidence 34555555555556799 5 699999999999874 7777786543
No 212
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=20.36 E-value=44 Score=22.05 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHcCCChhhHH
Q psy8528 85 WLPISAMHYVADFLNLPKMRVY 106 (240)
Q Consensus 85 ~Lp~~am~~VA~~L~lp~~~Vy 106 (240)
-++.+.+..||+.||+++.+++
T Consensus 47 ~~~~~~l~~ia~~l~v~~~~l~ 68 (73)
T 3omt_A 47 QPSLETLFDIAEALNVDVRELI 68 (73)
T ss_dssp CCCHHHHHHHHHHHTSCGGGGB
T ss_pred CCCHHHHHHHHHHHCcCHHHHh
Confidence 6899999999999999987653
No 213
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=20.25 E-value=93 Score=21.03 Aligned_cols=23 Identities=22% Similarity=0.072 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHcCCChhhHHH
Q psy8528 85 WLPISAMHYVADFLNLPKMRVYE 107 (240)
Q Consensus 85 ~Lp~~am~~VA~~L~lp~~~Vye 107 (240)
.++.+.+..||+.||+++..+.+
T Consensus 54 ~p~~~~l~~ia~~l~v~~~~l~~ 76 (86)
T 2ofy_A 54 TPAFFTIAAVARVLDLSLDDVAA 76 (86)
T ss_dssp SCBHHHHHHHHHHTTCCHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCHHHHhc
Confidence 57889999999999999888754
No 214
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=20.21 E-value=55 Score=21.71 Aligned_cols=23 Identities=9% Similarity=0.218 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHcCCChhhHHHHh
Q psy8528 87 PISAMHYVADFLNLPKMRVYEVA 109 (240)
Q Consensus 87 p~~am~~VA~~L~lp~~~VyeVA 109 (240)
..-...+||+.||++...|....
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~ 46 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIE 46 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHH
Confidence 44456889999999999987643
No 215
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=20.18 E-value=81 Score=23.47 Aligned_cols=54 Identities=7% Similarity=0.150 Sum_probs=34.6
Q ss_pred HHhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChhhHHHHh
Q psy8528 50 PDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVA 109 (240)
Q Consensus 50 ~e~~~~i~~il~~Yp~~~~rsalIplL~~aQ~q~G~Lp~~am~~VA~~L~lp~~~VyeVA 109 (240)
.+..+.+.+.|+.-|+ +..-|=.|+...+.. ..-..++||+.||++...|....
T Consensus 7 ~el~~~l~~aL~~Lp~---reR~Vi~Lry~l~~~---e~~s~~EIA~~lgiS~~tVr~~~ 60 (99)
T 3t72_q 7 ESLRAATHDVLAGLTA---REAKVLRMRFGIDMN---TDYTLEEVGKQFDVTRERIRQIE 60 (99)
T ss_pred HHHHHHHHHHHHcCCH---HHHHHHHHHHhcCCC---CCCCHHHHHHHHCcCHHHHHHHH
Confidence 4567788999999984 222222333322110 22357889999999999997654
No 216
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=20.04 E-value=1.3e+02 Score=21.66 Aligned_cols=17 Identities=0% Similarity=0.175 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHcCceEe
Q psy8528 146 SDAILEVIKKKCNMMLE 162 (240)
Q Consensus 146 s~~Il~~l~~~LgImv~ 162 (240)
.-+|+..|++++||-+.
T Consensus 59 ~vel~~~lE~~fgi~i~ 75 (97)
T 3ejb_A 59 TVELVMALEEEFDTEIP 75 (97)
T ss_dssp HHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHCCCCC
Confidence 45666667777776444
Done!