RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8528
(240 letters)
>gnl|CDD|216393 pfam01257, Complex1_24kDa, Respiratory-chain NADH dehydrogenase 24
Kd subunit.
Length = 145
Score = 146 bits (372), Expect = 7e-45
Identities = 58/155 (37%), Positives = 84/155 (54%), Gaps = 41/155 (26%)
Query: 56 AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMF 115
+ II+ YP +R+A+IPLL LAQ Q+G+LP A+ Y+A+ L +P RVYEVATFY+MF
Sbjct: 1 IDEIIAKYP--RKRSALIPLLHLAQEQYGYLPDEAIEYIAELLGIPPARVYEVATFYSMF 58
Query: 116 IRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN----------------- 158
KP+G+ YH+ CTTTPC LR SD +LE +++K
Sbjct: 59 NLKPVGK--------YHIQVCTTTPCHLRGSDELLEALEEKLGIKPGETTPDGKFTLEEV 110
Query: 159 -----------MMLERQ---DLEPKDMEQIIDDLK 179
M + DL P+ +++I++ LK
Sbjct: 111 ECLGACGNAPVMQINDDYYGDLTPEKVDEILEALK 145
>gnl|CDD|181024 PRK07539, PRK07539, NADH dehydrogenase subunit E; Validated.
Length = 154
Score = 143 bits (364), Expect = 1e-43
Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 41/163 (25%)
Query: 48 FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
+ + E I+ YP R+AVIP L + Q Q GW+P A+ VAD+L +P + V E
Sbjct: 2 LSAEELAAIEREIAKYP--RPRSAVIPALKIVQEQRGWVPDEAIEAVADYLGMPAIDVEE 59
Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK----------- 156
VATFY+M R+P+G + + CT+TPCWLR +AIL +KKK
Sbjct: 60 VATFYSMIFRQPVGR--------HVIQVCTSTPCWLRGGEAILAALKKKLGIKPGETTAD 111
Query: 157 ---------CN--------MMLERQ---DLEPKDMEQIIDDLK 179
C +M+ DL P+ +++++D+LK
Sbjct: 112 GRFTLLEVECLGACDNAPVVMINDDTYEDLTPEKIDELLDELK 154
>gnl|CDD|224817 COG1905, NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit [Energy
production and conversion].
Length = 160
Score = 139 bits (353), Expect = 6e-42
Identities = 51/112 (45%), Positives = 72/112 (64%), Gaps = 10/112 (8%)
Query: 46 FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
F F+ +N + EAII+ YP +R+A+IPLL +AQ Q GWLP A+ +AD L +P+ RV
Sbjct: 3 FAFSAENLELIEAIIAKYP--DKRSALIPLLHIAQEQFGWLPPEAIEEIADMLGIPRARV 60
Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKC 157
Y VATFYT F KP+G +H+ CT T C L+ S+A+L+ ++KK
Sbjct: 61 YGVATFYTQFFLKPVGR--------HHIRVCTGTACHLKGSEALLKALEKKL 104
>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional.
Length = 400
Score = 135 bits (342), Expect = 8e-38
Identities = 75/204 (36%), Positives = 102/204 (50%), Gaps = 47/204 (23%)
Query: 46 FEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
F FTP+N AE I+ YP G + +AVIPLL AQ Q GW+ +A+ VAD L++ +RV
Sbjct: 13 FAFTPENAAWAEKQITKYPEGRQASAVIPLLMRAQEQEGWVTRAAIEKVADMLDMAYIRV 72
Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN------- 158
EVATFYT F +P+G + H+ C TTPC LR S+A++ V K K +
Sbjct: 73 LEVATFYTQFQLQPVGT-------RAHIQVCGTTPCMLRGSEALMAVCKSKIHAHPHELN 125
Query: 159 ---------------------MMLER---QDLEPKDMEQIIDDLKAGKKPAPGPSGYTSG 194
+ + + +DL P+ +E+IID AGK P P
Sbjct: 126 ADGTLSWEEVECLGACVNAPMVQIGKDYYEDLTPERLEEIIDAFAAGKGPVVKP------ 179
Query: 195 IGSQSGRFCQAREAYHDMTSLTGE 218
G Q GR+ A E +TSLT E
Sbjct: 180 -GPQIGRY--ASEPAGGLTSLTEE 200
>gnl|CDD|131013 TIGR01958, nuoE_fam, NADH-quinone oxidoreductase, E subunit. This
model describes the E chain of complexes that resemble
NADH-quinone oxidoreductases. The electron acceptor is a
quinone, ubiquinone, in mitochondria and most bacteria,
including Escherichia coli, where the recommended gene
symbol is nuoB. This model does not identify proteins
from chloroplast and cyanobacteria [Energy metabolism,
Electron transport].
Length = 148
Score = 124 bits (313), Expect = 5e-36
Identities = 44/101 (43%), Positives = 64/101 (63%), Gaps = 8/101 (7%)
Query: 56 AEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMF 115
E II+ YP +R+A++P L +AQ Q GW+ A+ VA+ L +P + VYEVATFY+MF
Sbjct: 2 IEEIIAKYPDDQKRSAIMPALMIAQEQKGWVTPEAIAAVAEMLGIPPVWVYEVATFYSMF 61
Query: 116 IRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
+P+G +YHL CT PC LR S+A+L+ ++ K
Sbjct: 62 DTEPVG--------RYHLQVCTNVPCALRGSEALLKYLENK 94
>gnl|CDD|236053 PRK07571, PRK07571, bidirectional hydrogenase complex protein HoxE;
Reviewed.
Length = 169
Score = 63.6 bits (155), Expect = 1e-12
Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 71 AVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQ 130
A+I +L AQ G+L + YVA L LP RVY VATFY +F KP GE
Sbjct: 37 ALIEVLHKAQELFGYLERDLLLYVARQLKLPLSRVYGVATFYHLFSLKPSGEHTCVV--- 93
Query: 131 YHLNWCTTTPCWLRNSDAILEVIKK 155
CT T C+++ S AILE ++
Sbjct: 94 -----CTGTACYVKGSAAILEDLEN 113
>gnl|CDD|239362 cd03064, TRX_Fd_NuoE, TRX-like [2Fe-2S] Ferredoxin (Fd) family,
NADH:ubiquinone oxidoreductase (Nuo) subunit E
subfamily; Nuo, also called respiratory chain Complex 1,
is the entry point for electrons into the respiratory
chains of bacteria and the mitochondria of eukaryotes.
It is a multisubunit complex with at least 14 core
subunits. It catalyzes the electron transfer of NADH to
quinone coupled with the transfer of protons across the
membrane, providing the proton motive force required for
energy-consuming processes. Electrons are transferred
from NADH to quinone through a chain of iron-sulfur
clusters in Nuo, including the [2Fe-2S] cluster present
in NuoE core subunit, also called the 24 kD subunit of
Complex 1. This subfamily also include formate
dehydrogenases, NiFe hydrogenases and NAD-reducing
hydrogenases, that contain a NuoE domain. A subset of
these proteins contain both NuoE and NuoF in a single
chain. NuoF, also called the 51 kD subunit of Complex 1,
contains one [4Fe-4S] cluster and also binds the NADH
substrate and FMN.
Length = 80
Score = 42.9 bits (102), Expect = 6e-06
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 31/79 (39%)
Query: 131 YHLNWCTTTPCWLRNSDAILEVIKKKCN----------------------------MMLE 162
+ + CT T C LR ++A+LE ++KK MM+
Sbjct: 2 HVIRVCTGTACHLRGAEALLEALEKKLGIKPGETTPDGRFTLEEVECLGACDLAPVMMIN 61
Query: 163 RQ---DLEPKDMEQIIDDL 178
L P+ ++ I++ L
Sbjct: 62 DDVYGRLTPEKVDAILEAL 80
>gnl|CDD|180339 PRK05988, PRK05988, formate dehydrogenase subunit gamma; Validated.
Length = 156
Score = 39.9 bits (94), Expect = 2e-04
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 14/111 (12%)
Query: 48 FTPDNKKRAEAIISIYPVGHER--AAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRV 105
P + R AII+ H+ A++P+L Q + G++P A+ +A+ LNL + V
Sbjct: 3 DEPWDAARIAAIIA----EHKHLEGALLPILHAIQDEFGYVPEDAVPVIAEALNLSRAEV 58
Query: 106 YEVATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKK 156
+ V TFY F P G +K C C DA+ K +
Sbjct: 59 HGVITFYHDFRTHPPGRHVLK--------LCRAEACQAMGGDALAAHAKAR 101
>gnl|CDD|239278 cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin
(Fd) family; composed of [2Fe-2S] Fds with a TRX fold
(TRX-like Fds) and proteins containing domains similar
to TRX-like Fd including formate dehydrogenases,
NAD-reducing hydrogenases and the subunit E of
NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are
soluble low-potential electron carriers containing a
single [2Fe-2S] cluster. The exact role of TRX-like Fd
is still unclear. It has been suggested that it may be
involved in nitrogen fixation. Its homologous domains in
large redox enzymes (such as Nuo and hydrogenases)
function as electron carriers.
Length = 77
Score = 36.5 bits (85), Expect = 0.001
Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 29/77 (37%)
Query: 131 YHLNWCTTTPCWLRNSDAILEVIKKK----------------C--------NMMLERQD- 165
+H+ CT T C LR ++ +LE ++K+ C +++
Sbjct: 1 HHILVCTGTACGLRGAEELLEALEKELGIRGGDGRVTVERVGCLGACGLAPVVVVYPDGV 60
Query: 166 ----LEPKDMEQIIDDL 178
+ P+D+E+I+++L
Sbjct: 61 WYGRVTPEDVEEIVEEL 77
>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 1.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 1, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK1 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK1 is
important in the regulation of many cellular processes
including cytoskeletal dynamics, cell motility, growth,
and proliferation. Although PAK1 has been regarded
mainly as a cytosolic protein, recent reports indicate
that PAK1 also exists in significant amounts in the
nucleus, where it is involved in transcription
modulation and in cell cycle regulatory events. PAK1 is
also involved in transformation and tumorigenesis. Its
overexpression, hyperactivation and increased nuclear
accumulation is correlated to breast cancer invasiveness
and progression. Nuclear accumulation is also linked to
tamoxifen resistance in breast cancer cells.
Length = 296
Score = 34.3 bits (78), Expect = 0.039
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 22/126 (17%)
Query: 28 HDALFVHRDTKDDNL-----------DVKF--EFTPDNKKRAEAIISIYPVGHE---RAA 71
H +HRD K DN+ D F + TP+ KR+ + + Y + E R A
Sbjct: 133 HSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKA 192
Query: 72 VIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR-VYEVATFYTMFIRKPIGEERIKSILQ 130
P +D+ G + I + +LN +R +Y +AT T ++ P E++ +I +
Sbjct: 193 YGPKVDIWSL--GIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNP---EKLSAIFR 247
Query: 131 YHLNWC 136
LN C
Sbjct: 248 DFLNRC 253
>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 3.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 3, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK3 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK3 is
highly expressed in the brain. It is implicated in
neuronal plasticity, synapse formation, dendritic spine
morphogenesis, cell cycle progression, neuronal
migration, and apoptosis. Inactivating mutations in the
PAK3 gene cause X-linked non-syndromic mental
retardation, the severity of which depends on the site
of the mutation.
Length = 297
Score = 32.4 bits (73), Expect = 0.17
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 22/126 (17%)
Query: 28 HDALFVHRDTKDDNL-----------DVKF--EFTPDNKKRAEAIISIYPVGHE---RAA 71
H +HRD K DN+ D F + TP+ KR+ + + Y + E R A
Sbjct: 132 HSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKA 191
Query: 72 VIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR-VYEVATFYTMFIRKPIGEERIKSILQ 130
P +D+ G + I + +LN +R +Y +AT T ++ P ER+ ++ +
Sbjct: 192 YGPKVDIWSL--GIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNP---ERLSAVFR 246
Query: 131 YHLNWC 136
LN C
Sbjct: 247 DFLNRC 252
>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 2.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 2, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK2 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK2 plays a
role in pro-apoptotic signaling. It is cleaved and
activated by caspases leading to morphological changes
during apoptosis. PAK2 is also activated in response to
a variety of stresses including DNA damage,
hyperosmolarity, serum starvation, and contact
inhibition, and may play a role in coordinating the
stress response. PAK2 also contributes to cancer cell
invasion through a mechanism distinct from that of PAK1.
Length = 296
Score = 30.1 bits (67), Expect = 1.0
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 22/126 (17%)
Query: 28 HDALFVHRDTKDDNL-----------DVKF--EFTPDNKKRAEAIISIYPVGHE---RAA 71
H +HRD K DN+ D F + TP+ KR+ + + Y + E R A
Sbjct: 132 HANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKA 191
Query: 72 VIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR-VYEVATFYTMFIRKPIGEERIKSILQ 130
P +D+ G + I + +LN +R +Y +AT T ++ P E++ I +
Sbjct: 192 YGPKVDIWSL--GIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNP---EKLSPIFR 246
Query: 131 YHLNWC 136
LN C
Sbjct: 247 DFLNRC 252
>gnl|CDD|219059 pfam06491, Disulph_isomer, Disulphide isomerase. This family of
proteins has disulphide isomerase activity, EC:5.3.4.1.
It has a similar fold to thioredoxin, with an
alpha-beta-alpha-beta-alpha-beta-beta-alpha topology. It
has a conserved CGC motif in the loop immediately
downstream of the first beta strand. This motif is
essential for activity.
Length = 136
Score = 28.4 bits (64), Expect = 2.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 159 MMLERQDLEPKDMEQIIDDLKA 180
M+ER +E +D E I ++L
Sbjct: 109 HMIERHHIEGRDAEMIAENLVE 130
>gnl|CDD|182745 PRK10803, PRK10803, tol-pal system protein YbgF; Provisional.
Length = 263
Score = 27.8 bits (62), Expect = 4.5
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 158 NMMLERQDLEPKDMEQIIDDLKAGKKPAPGPSGYTSGIGSQSGRFCQAREAYHDMTSLTG 217
N ++ERQ K + ID L +G A S G QSG A A T+ G
Sbjct: 85 NQVVERQ----KQIYLQIDSLSSGGAAAQSTS------GDQSGAAASATPAADAGTANAG 134
Query: 218 EPHGPWDSKRDF 229
P D+ D+
Sbjct: 135 APVQSGDANTDY 146
>gnl|CDD|218721 pfam05731, TROVE, TROVE domain. This presumed domain is found in
TEP1 and Ro60 proteins, that are RNA-binding components
of Telomerase, Ro and Vault RNPs. This domain has been
named TROVE, (after Telomerase, Ro and Vault). This
domain is probably RNA-binding.
Length = 351
Score = 28.2 bits (63), Expect = 4.5
Identities = 9/34 (26%), Positives = 10/34 (29%)
Query: 1 MLSNLAKLASNVVRQNVRSLSTTQRLNHDALFVH 34
+L NL L V S QRL
Sbjct: 265 LLRNLGNLLRVGVSDPAHSALVAQRLTDPKAVKR 298
>gnl|CDD|203504 pfam06713, DUF1200, Domain of unknown function (DUF1200). This
family consists of several hypothetical proteins
specific to Oceanobacillus and Bacillus species. Members
of this family are typically around 130 residues in
length. The function of this family is unknown. Members
of this family have a PH domain like structure.
Length = 74
Score = 26.0 bits (58), Expect = 5.3
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 115 FIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLERQDLEPKDMEQI 174
F +K I E I I + ++P + LE+ K + +L + PKD E+
Sbjct: 16 FFKKKIPIEDITKIRKTKSPL--SSPALSLDR---LEIKYGKYDTIL----ISPKDKEEF 66
Query: 175 IDDLK 179
I LK
Sbjct: 67 IKLLK 71
>gnl|CDD|222169 pfam13485, Peptidase_MA_2, Peptidase MA superfamily.
Length = 128
Score = 26.7 bits (59), Expect = 6.2
Identities = 7/50 (14%), Positives = 20/50 (40%)
Query: 81 RQHGWLPISAMHYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIKSILQ 130
R P+ + + Y + ++ + GEE+++++L+
Sbjct: 77 RSGRLPPLDELSADFSANSEDGSLAYAQGAAFVRYLAERYGEEKLRALLR 126
>gnl|CDD|145834 pfam02885, Glycos_trans_3N, Glycosyl transferase family, helical
bundle domain. This family includes anthranilate
phosphoribosyltransferase (TrpD), thymidine
phosphorylase. All these proteins can transfer a
phosphorylated ribose substrate.
Length = 66
Score = 25.6 bits (57), Expect = 6.6
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 149 ILEVIKKKCNMMLERQDLEPKDMEQIIDDLKAGK 182
I E+IKK L +DL ++ E ++D + +G+
Sbjct: 2 IKELIKKL----LRGEDLSREEAEALMDAILSGE 31
>gnl|CDD|212525 cd10001, HDAC_classII_APAH, Histone deacetylase class IIa. This
subfamily includes bacterial acetylpolyamine
amidohydrolase (APAH) as well as other Class II histone
deacetylase (HDAC) and related proteins. Deacetylases
of class II are Zn-dependent enzymes that catalyze
hydrolysis of N(6)-acetyl-lysine residues of histones
(EC 3.5.1.98) and possibly other proteins to yield
deacetylated histones/other proteins. Mycoplana ramosa
APAH exhibits broad substrate specificity and catalyzes
the deacetylation of polyamines such as putrescine,
spermidine, and spermine by cleavage of a non-peptide
amide bond.
Length = 298
Score = 27.5 bits (62), Expect = 7.0
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 28 HDALFVHRDTKDDNLDVKFEFTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLP 87
+ + K + K P+N +RAEAI+ +RA + + L R G P
Sbjct: 4 YSEDHLLHHPKTELSRGKLVPHPENPERAEAILD----ALKRAGLGEV--LPPRDFGLEP 57
Query: 88 ISAMH---YVADFL 98
I A+H YV DFL
Sbjct: 58 ILAVHDPDYV-DFL 70
>gnl|CDD|182791 PRK10865, PRK10865, protein disaggregation chaperone; Provisional.
Length = 857
Score = 27.5 bits (61), Expect = 7.1
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 20/67 (29%)
Query: 77 DLAQRQHGWLPISAM----------HYVADFLNLPKMRVYEVATFYTMFIRKPIGEERIK 126
DL Q + G L + M ++ +F+N R+ EV F+ P+GE+ I
Sbjct: 723 DLIQERFGELDYAHMKELVLGVVSHNFRPEFIN----RIDEVVVFH------PLGEQHIA 772
Query: 127 SILQYHL 133
SI Q L
Sbjct: 773 SIAQIQL 779
>gnl|CDD|184358 PRK13874, PRK13874, conjugal transfer protein TrbJ; Provisional.
Length = 230
Score = 27.2 bits (61), Expect = 7.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 4 NLAKLASNVVRQNVRSLSTTQRL 26
NLA L + ++Q +SL+ TQ+L
Sbjct: 69 NLASLPYSSLQQLQQSLARTQQL 91
>gnl|CDD|234494 TIGR04191, YphP_YqiW, bacillithiol system oxidoreductase, YphP/YqiW
family. This protein family is one of several observed
in species that express bacillithiol, an analog of
glutathione and mycothiol. Rather than being involved in
bacillithiol biosynthesis, members are likely to act in
bacillithiol-dependent processes.
Length = 136
Score = 26.4 bits (59), Expect = 8.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 160 MLERQDLEPKDMEQIIDDLKA 180
+ER +E + E+I DL+A
Sbjct: 110 FIERHHIEGRSAEEIAADLQA 130
>gnl|CDD|227128 COG4790, EscR, Type III secretory pathway, component EscR
[Intracellular trafficking and secretion].
Length = 214
Score = 26.9 bits (60), Expect = 9.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 101 PKMRVYEVATFYTMFIRKPIGEE 123
P M +Y VA +MF+ P+G +
Sbjct: 48 PNMALYGVALILSMFVMAPVGLQ 70
>gnl|CDD|237764 PRK14607, PRK14607, bifunctional glutamine
amidotransferase/anthranilate phosphoribosyltransferase;
Provisional.
Length = 534
Score = 27.0 bits (60), Expect = 9.7
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 15/62 (24%)
Query: 121 GEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCNMMLERQDLEPKDMEQIIDDLKA 180
G+ +K+ L Y R I +KK ++E +DL ++ E +++D+
Sbjct: 178 GKRILKNFLNYQ-----------REEIDIKSYLKK----LVEGEDLSFEEAEDVMEDITD 222
Query: 181 GK 182
G
Sbjct: 223 GN 224
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.418
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,169,232
Number of extensions: 1150578
Number of successful extensions: 1174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1165
Number of HSP's successfully gapped: 33
Length of query: 240
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 146
Effective length of database: 6,768,326
Effective search space: 988175596
Effective search space used: 988175596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)