RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8528
         (240 letters)



>d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2,
           NQO2 {Thermus thermophilus [TaxId: 274]}
          Length = 178

 Score =  107 bits (269), Expect = 7e-30
 Identities = 32/173 (18%), Positives = 62/173 (35%), Gaps = 40/173 (23%)

Query: 48  FTPDNKKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMRVYE 107
           F  D +   E   + YP    RAA++PLL   Q++ GW+    +  +A  +      V  
Sbjct: 1   FFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMG 60

Query: 108 VATFYTMFIRKPIGEERIKSILQYHLNWCTTTPCWLRNSDAILEVIKKKCN--------- 158
           VA+FY+ +        +     +YHL  C T  C L  ++ + + + +            
Sbjct: 61  VASFYSYY--------QFVPTGKYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPD 112

Query: 159 -------------------MMLERQ----DLEPKDMEQIIDDLKAGKKPAPGP 188
                              + +  +     +    +E ++  L+AGK+     
Sbjct: 113 GLFSVQKVECLGSCHTAPVIQVNDEPYVECVTRARLEALLAGLRAGKRLEEIE 165


>d2g5ca1 a.100.1.12 (A:201-310) Prephenate dehydrogenase TyrA
           {Aquifex aeolicus [TaxId: 63363]}
          Length = 110

 Score = 28.8 bits (64), Expect = 0.21
 Identities = 7/53 (13%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 132 HLNWCTTTPCWLRNSDAILEVIKKKCNMMLE-RQDLEPKDMEQIIDDLKAGKK 183
             +       +L N + +++ I+     +   ++ +  +  E++++ LK  K 
Sbjct: 53  KSDPIMWRDIFLENKENVMKAIEGFEKSLNHLKELIVREAEEELVEYLKEVKI 105


>d3seba1 b.40.2.2 (A:1-121) Staphylococcal enterotoxin B, SEB
          {Staphylococcus aureus [TaxId: 1280]}
          Length = 121

 Score = 26.4 bits (58), Expect = 1.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 12 VVRQNVRSLSTTQRLNHDALFVHRDTKDDNL-DVKFEF 48
          V   NV+S    Q L  D ++  +DTK  N  +V+ EF
Sbjct: 33 VSAINVKS--IDQFLYFDLIYSIKDTKLGNYDNVRVEF 68


>d2f1ka1 a.100.1.12 (A:166-279) Prephenate dehydrogenase TyrA
           {Synechocystis sp. pcc 6803 [TaxId: 1148]}
          Length = 114

 Score = 26.1 bits (57), Expect = 2.2
 Identities = 6/53 (11%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 132 HLNWCTTTPCWLRNSDAILEVIKKKCNMMLE-RQDLEPKDMEQIIDDLKAGKK 183
             N    T     N  A+L+ ++     + +    +  +   ++   L+    
Sbjct: 55  GGNPELGTMMATYNQRALLKSLQDYRQHLDQLITLISNQQWPELHRLLQQTNG 107


>d1lnla1 a.86.1.1 (A:-3-304) Mollusc hemocyanin {Mollusca (Rapana
          thomasiana) [TaxId: 29165]}
          Length = 307

 Score = 25.9 bits (56), Expect = 4.7
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)

Query: 10 SNVVRQNVRSLSTTQRLN-HDAL 31
           N+VR++VR+LS  +R +   AL
Sbjct: 3  RNLVRKSVRNLSPAERASLVAAL 25


>d1dbfa_ d.79.1.2 (A:) Chorismate mutase {Bacillus subtilis [TaxId:
           1423]}
          Length = 127

 Score = 25.0 bits (55), Expect = 4.9
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 4/40 (10%)

Query: 145 NSDAILEVIKKKCNMMLERQDLEPKDMEQII----DDLKA 180
             + IL+  K+    ++E    +P+D+ Q++     DL A
Sbjct: 16  TEEEILQKTKQLLEKIIEENHTKPEDVVQMLLSATPDLHA 55


>d1xhoa_ d.79.1.2 (A:) Chorismate mutase {Clostridium thermocellum
           [TaxId: 1515]}
          Length = 112

 Score = 25.0 bits (55), Expect = 5.0
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 145 NSDAILEVIKKKCNMMLERQDLEPKDMEQII----DDLKA 180
            +D I+   +K    M E+  LE  D+  II     DL A
Sbjct: 14  TADEIVAETQKLLKEMAEKNGLEEDDIISIIFTVTKDLDA 53


>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase)
           {Azospirillum irakense [TaxId: 34011]}
          Length = 408

 Score = 25.7 bits (56), Expect = 6.6
 Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 9/69 (13%)

Query: 46  FEFTPDN-KKRAEAIISIYPVGHERAAVIPLLDLAQRQHGWLPISAMHYVADFLNLPKMR 104
           F F P   + RA             AA+  +++    Q G        + A  L     R
Sbjct: 232 FGFVPPAIRTRALEAT--------NAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSAR 283

Query: 105 VYEVATFYT 113
            +E A   +
Sbjct: 284 NFEPAALSS 292


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.418 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 915,107
Number of extensions: 43064
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 21
Length of query: 240
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,268,006
Effective search space: 199076942
Effective search space used: 199076942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)