BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8529
(436 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|91080831|ref|XP_970656.1| PREDICTED: similar to Histone deacetylase 11 (HD11) [Tribolium
castaneum]
gi|270005420|gb|EFA01868.1| hypothetical protein TcasGA2_TC007473 [Tribolium castaneum]
Length = 331
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/322 (55%), Positives = 224/322 (69%), Gaps = 16/322 (4%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
WPI+YRPEYNV F LEKLHPFD+ KW +I+ YL + + + P E +
Sbjct: 14 WPIIYRPEYNVRFLGLEKLHPFDAGKWGNIYKYLK--------SCGLVNDETLSVPNEAT 65
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
E LL HT+KYLKSLK SFNVA I+EV PL VPNY VQ+ YLRPMR+ GG++ AG L
Sbjct: 66 TEDLLTVHTKKYLKSLKCSFNVALIAEVLPLCLVPNYLVQRGYLRPMRFQTGGSVLAGKL 125
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQ--SKSISTAMIVDLDAHQGN 288
AL RGW+INIGGGFHH +KGGGFC YADI+LL+ +F +S+ MIVDLDAHQGN
Sbjct: 126 ALERGWAINIGGGFHHCCGSKGGGFCVYADITLLIHFVFNHHPRSVQNVMIVDLDAHQGN 185
Query: 289 GYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSL 342
GY++DF + ++I++ AKE I ++ELA +TED YL+K+ L +L
Sbjct: 186 GYQRDFKDNPNVYIIDVYNKGIYPFDKLAKEYITRKVELAHFTEDDEYLDKVAKNLTEAL 245
Query: 343 RSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402
FCP +IVYNAGTD+L D LG L++SPQGII RDELVF +AR R +PIVMLTSGGYLK
Sbjct: 246 AEFCPQLIVYNAGTDILKGDALGCLSVSPQGIIERDELVFREARSRNIPIVMLTSGGYLK 305
Query: 403 QTARIIADSILNLADLGLISRP 424
++A+IIA SI NL D GLI+ P
Sbjct: 306 KSAKIIATSIKNLHDSGLITGP 327
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQ--SKSISTAMIV 61
G++ AG LAL RGW+INIGGGFHH +KGGGFC YADI+LL+ +F +S+ MIV
Sbjct: 118 GSVLAGKLALERGWAINIGGGFHHCCGSKGGGFCVYADITLLIHFVFNHHPRSVQNVMIV 177
Query: 62 DLDAHQFSDY 71
DLDAHQ + Y
Sbjct: 178 DLDAHQGNGY 187
>gi|10438544|dbj|BAB15272.1| unnamed protein product [Homo sapiens]
Length = 347
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 178/331 (53%), Positives = 235/331 (70%), Gaps = 15/331 (4%)
Query: 99 TSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI 158
T++ + V PWPIVY P YN+ F LEKLHPFD+ KW + N+L E K +
Sbjct: 4 TTQLYQHVPETPWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLL 55
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
+ ++E +E SEE LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R
Sbjct: 56 SDSMLVEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLR 115
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTA 277
GGT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A
Sbjct: 116 TQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRA 175
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYL 331
I+DLDAHQGNG+E+DFM++ R++IM+ AK+AIR ++EL TED YL
Sbjct: 176 TIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYL 235
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
+K+E +++SL+ PD++VYNAGTD+L D LG L+ISP GI++RDELVF R RRVP
Sbjct: 236 DKVERNIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVP 295
Query: 392 IVMLTSGGYLKQTARIIADSILNLADLGLIS 422
I+M+TSGGY K+TARIIADSILNL LGLI
Sbjct: 296 ILMVTSGGYQKRTARIIADSILNLFGLGLIG 326
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 120 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 179
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 180 LDAHQ 184
>gi|449266313|gb|EMC77377.1| Histone deacetylase 11, partial [Columba livia]
Length = 334
Score = 367 bits (942), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 176/320 (55%), Positives = 229/320 (71%), Gaps = 15/320 (4%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
WPIVY P+YN+ F LEKLHPFD+ KW + N+L E K I D I++ +E +
Sbjct: 14 WPIVYSPDYNITFVGLEKLHPFDAGKWGKVINFL--------KEEKLIADDLIVQAREAT 65
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+E LL+ HT +YL LKWSF VA I+E+ P+ +PN+ VQ+ LRP+R GGT+ AG L
Sbjct: 66 DEDLLVVHTRRYLNKLKWSFVVATITEIPPVAFLPNFVVQRKVLRPLRTQTGGTIMAGKL 125
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNG 289
A+ RGW+IN+GGGFHH S KGGGFCAYADI+L +K LF+ + +S A I+DLDAHQGNG
Sbjct: 126 AVDRGWAINVGGGFHHCSSDKGGGFCAYADITLAIKFLFERVQGVSKATIIDLDAHQGNG 185
Query: 290 YEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+E+DFM++ R++IM+ AK AI+ ++EL TED YL+K+ +E +L
Sbjct: 186 HERDFMDDHRVYIMDVYNRYIYPGDGFAKRAIKRKVELEWGTEDTEYLQKVHTHVEGALN 245
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PDIIVYNAGTD+L DPLG LA+SPQGI++RDE+VF AR RR+PI+M+TSGGY K+
Sbjct: 246 ELKPDIIVYNAGTDILDGDPLGGLAVSPQGIVKRDEVVFKAARRRRIPILMVTSGGYQKR 305
Query: 404 TARIIADSILNLADLGLISR 423
TARIIADSILNL LGLI +
Sbjct: 306 TARIIADSILNLHSLGLIDK 325
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 64/106 (60%), Gaps = 22/106 (20%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S KGGGFCAYADI+L +K LF+ + +S A I+D
Sbjct: 118 GTIMAGKLAVDRGWAINVGGGFHHCSSDKGGGFCAYADITLAIKFLFERVQGVSKATIID 177
Query: 63 LDAHQ-------------------FSDYYFPSAHSIKR--KRKVEF 87
LDAHQ ++ Y +P KR KRKVE
Sbjct: 178 LDAHQGNGHERDFMDDHRVYIMDVYNRYIYPGDGFAKRAIKRKVEL 223
>gi|326927845|ref|XP_003210099.1| PREDICTED: histone deacetylase 11-like [Meleagris gallopavo]
Length = 425
Score = 367 bits (942), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 179/331 (54%), Positives = 234/331 (70%), Gaps = 15/331 (4%)
Query: 100 SEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFIT 159
+E E V + WPIVY P+YN+ F LEKLHPFD+ KW + N+L E K I
Sbjct: 74 TELYEGVPSTCWPIVYSPDYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLIG 125
Query: 160 QDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRY 219
D I++ +E ++E LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ L+P+R
Sbjct: 126 DDLIVQAREATDEDLLVVHTRRYLNKLKWSFVVATITEIPPVLFLPNFLVQRKVLKPLRT 185
Query: 220 HVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAM 278
GGT+ AG LA+ RGW+IN+GGGFHH S KGGGFCAYADI+L +K LF+ +S A
Sbjct: 186 QTGGTIMAGKLAVDRGWAINVGGGFHHCSSDKGGGFCAYADITLAIKFLFERVPGVSKAT 245
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLE 332
I+DLDAHQGNG+E+DFMN+ R++IM+ AK AI+ ++EL TED YL+
Sbjct: 246 IIDLDAHQGNGHERDFMNDHRVYIMDVYNRYIYPGDGFAKRAIKRKVELEWGTEDTEYLQ 305
Query: 333 KIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPI 392
K+ +E +L PDIIVYNAGTD+L DPLG LAISPQGI++RDE+VF AR R +PI
Sbjct: 306 KVHTHVEGALNELKPDIIVYNAGTDILDGDPLGGLAISPQGIVKRDEVVFKAARSRGIPI 365
Query: 393 VMLTSGGYLKQTARIIADSILNLADLGLISR 423
+M+TSGGY K+TARIIADSILNL +LGLI +
Sbjct: 366 LMVTSGGYQKRTARIIADSILNLHNLGLIDK 396
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 63/106 (59%), Gaps = 22/106 (20%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S KGGGFCAYADI+L +K LF+ +S A I+D
Sbjct: 189 GTIMAGKLAVDRGWAINVGGGFHHCSSDKGGGFCAYADITLAIKFLFERVPGVSKATIID 248
Query: 63 LDAHQ-------------------FSDYYFPSAHSIKR--KRKVEF 87
LDAHQ ++ Y +P KR KRKVE
Sbjct: 249 LDAHQGNGHERDFMNDHRVYIMDVYNRYIYPGDGFAKRAIKRKVEL 294
>gi|118096828|ref|XP_414321.2| PREDICTED: histone deacetylase 11 [Gallus gallus]
Length = 358
Score = 367 bits (941), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 179/331 (54%), Positives = 233/331 (70%), Gaps = 15/331 (4%)
Query: 100 SEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFIT 159
+E E V WPIVY P+YN+ F LEKLHPFD+ KW + N+L E K I
Sbjct: 5 TELYEGVPPTCWPIVYSPDYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLIG 56
Query: 160 QDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRY 219
D I++ +E ++E LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ L+P+R
Sbjct: 57 DDLIVQAREATDEDLLVVHTRRYLNKLKWSFVVATITEIPPVLFLPNFLVQRKVLKPLRT 116
Query: 220 HVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAM 278
GGT+ AG LA+ RGW+IN+GGGFHH S KGGGFCAYADI+L +K LF+ +S A
Sbjct: 117 QTGGTIMAGKLAVDRGWAINVGGGFHHCSSDKGGGFCAYADITLAIKFLFERVPGVSKAT 176
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLE 332
I+DLDAHQGNG+E+DFMN+ R++IM+ AK AI+ ++EL TED YL+
Sbjct: 177 IIDLDAHQGNGHERDFMNDHRVYIMDAYNRYIYPGDGFAKRAIKRKVELEWGTEDTEYLQ 236
Query: 333 KIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPI 392
K+ +E +L PDIIVYNAGTD+L DPLG LAISPQGI++RDE+VF AR R +PI
Sbjct: 237 KVHTHVEGALNELKPDIIVYNAGTDILDGDPLGGLAISPQGIVKRDEVVFKAARSRGIPI 296
Query: 393 VMLTSGGYLKQTARIIADSILNLADLGLISR 423
+M+TSGGY K+TARIIADSILNL +LGLI +
Sbjct: 297 LMVTSGGYQKRTARIIADSILNLHNLGLIDK 327
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 63/106 (59%), Gaps = 22/106 (20%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S KGGGFCAYADI+L +K LF+ +S A I+D
Sbjct: 120 GTIMAGKLAVDRGWAINVGGGFHHCSSDKGGGFCAYADITLAIKFLFERVPGVSKATIID 179
Query: 63 LDAHQ-------------------FSDYYFPSAHSIKR--KRKVEF 87
LDAHQ ++ Y +P KR KRKVE
Sbjct: 180 LDAHQGNGHERDFMNDHRVYIMDAYNRYIYPGDGFAKRAIKRKVEL 225
>gi|426339523|ref|XP_004033698.1| PREDICTED: histone deacetylase 11 isoform 1 [Gorilla gorilla
gorilla]
Length = 347
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 177/331 (53%), Positives = 234/331 (70%), Gaps = 15/331 (4%)
Query: 99 TSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI 158
T++ + V WPIVY P YN+ F LEKLHPFD+ KW + N+L E K +
Sbjct: 4 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLL 55
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
+ ++E +E SEE LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R
Sbjct: 56 SDSMLVEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLR 115
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTA 277
GGT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A
Sbjct: 116 TQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRA 175
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYL 331
I+DLDAHQGNG+E+DFM++ R++IM+ AK+AIR ++EL TED YL
Sbjct: 176 TIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYL 235
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
+K+E +++SL+ PD++VYNAGTD+L D LG L+ISP GI++RDELVF R RRVP
Sbjct: 236 DKVERNIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVP 295
Query: 392 IVMLTSGGYLKQTARIIADSILNLADLGLIS 422
I+M+TSGGY K+TARIIADSILNL LGLI
Sbjct: 296 ILMVTSGGYQKRTARIIADSILNLFGLGLIG 326
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 120 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 179
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 180 LDAHQ 184
>gi|217272877|ref|NP_079103.2| histone deacetylase 11 isoform 1 [Homo sapiens]
gi|26394832|sp|Q96DB2.1|HDA11_HUMAN RecName: Full=Histone deacetylase 11; Short=HD11
gi|16307174|gb|AAH09676.1| Histone deacetylase 11 [Homo sapiens]
gi|117644908|emb|CAL37920.1| hypothetical protein [synthetic construct]
gi|117646466|emb|CAL38700.1| hypothetical protein [synthetic construct]
gi|119584569|gb|EAW64165.1| histone deacetylase 11, isoform CRA_i [Homo sapiens]
gi|119584572|gb|EAW64168.1| histone deacetylase 11, isoform CRA_i [Homo sapiens]
gi|208966472|dbj|BAG73250.1| histone deacetylase 11 [synthetic construct]
gi|410220854|gb|JAA07646.1| histone deacetylase 11 [Pan troglodytes]
gi|410262586|gb|JAA19259.1| histone deacetylase 11 [Pan troglodytes]
gi|410287274|gb|JAA22237.1| histone deacetylase 11 [Pan troglodytes]
gi|410336795|gb|JAA37344.1| histone deacetylase 11 [Pan troglodytes]
Length = 347
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 177/331 (53%), Positives = 234/331 (70%), Gaps = 15/331 (4%)
Query: 99 TSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI 158
T++ + V WPIVY P YN+ F LEKLHPFD+ KW + N+L E K +
Sbjct: 4 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLL 55
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
+ ++E +E SEE LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R
Sbjct: 56 SDSMLVEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLR 115
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTA 277
GGT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A
Sbjct: 116 TQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRA 175
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYL 331
I+DLDAHQGNG+E+DFM++ R++IM+ AK+AIR ++EL TED YL
Sbjct: 176 TIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYL 235
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
+K+E +++SL+ PD++VYNAGTD+L D LG L+ISP GI++RDELVF R RRVP
Sbjct: 236 DKVERNIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVP 295
Query: 392 IVMLTSGGYLKQTARIIADSILNLADLGLIS 422
I+M+TSGGY K+TARIIADSILNL LGLI
Sbjct: 296 ILMVTSGGYQKRTARIIADSILNLFGLGLIG 326
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 120 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 179
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 180 LDAHQ 184
>gi|388454314|ref|NP_001252584.1| histone deacetylase 11 [Macaca mulatta]
gi|26394837|sp|Q9GKU5.2|HDA11_MACFA RecName: Full=Histone deacetylase 11; Short=HD11
gi|387542188|gb|AFJ71721.1| histone deacetylase 11 isoform 1 [Macaca mulatta]
Length = 347
Score = 364 bits (934), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 177/331 (53%), Positives = 233/331 (70%), Gaps = 15/331 (4%)
Query: 99 TSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI 158
T++ + V WPIVY P YN+ F LEKLHPFD+ KW + N+L E K +
Sbjct: 4 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLL 55
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
+ ++E +E SEE LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R
Sbjct: 56 SDSMLVEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLR 115
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTA 277
GGT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A
Sbjct: 116 TQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRA 175
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYL 331
I+DLDAHQGNG+E+DFM++ R++IM+ AK+AIR ++EL TED YL
Sbjct: 176 TIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYL 235
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
+K+E +E+SL+ PD++VYNAGTD+L D LG L+ISP GI++RDELVF R R VP
Sbjct: 236 DKVERNIEKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRHVP 295
Query: 392 IVMLTSGGYLKQTARIIADSILNLADLGLIS 422
I+M+TSGGY K+TARIIADSILNL LGLI
Sbjct: 296 ILMVTSGGYQKRTARIIADSILNLFGLGLIG 326
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 120 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 179
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 180 LDAHQ 184
>gi|380798593|gb|AFE71172.1| histone deacetylase 11 isoform 1, partial [Macaca mulatta]
Length = 338
Score = 364 bits (934), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 175/319 (54%), Positives = 228/319 (71%), Gaps = 15/319 (4%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
WPIVY P YN+ F LEKLHPFD+ KW + N+L E K ++ ++E +E S
Sbjct: 7 WPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLLSDSMLVEAREAS 58
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
EE LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R GGT+ AG L
Sbjct: 59 EEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIMAGKL 118
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNG 289
A+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+DLDAHQGNG
Sbjct: 119 AVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAHQGNG 178
Query: 290 YEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+E+DFM++ R++IM+ AK+AIR ++EL TED YL+K+E +E+SL+
Sbjct: 179 HERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIEKSLQ 238
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD++VYNAGTD+L D LG L+ISP GI++RDELVF R R VPI+M+TSGGY K+
Sbjct: 239 EHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRHVPILMVTSGGYQKR 298
Query: 404 TARIIADSILNLADLGLIS 422
TARIIADSILNL LGLI
Sbjct: 299 TARIIADSILNLFGLGLIG 317
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 111 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 170
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 171 LDAHQ 175
>gi|355559429|gb|EHH16157.1| hypothetical protein EGK_11401, partial [Macaca mulatta]
gi|355746507|gb|EHH51121.1| hypothetical protein EGM_10451, partial [Macaca fascicularis]
Length = 347
Score = 364 bits (934), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 177/331 (53%), Positives = 233/331 (70%), Gaps = 15/331 (4%)
Query: 99 TSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI 158
T++ + V WPIVY P YN+ F LEKLHPFD+ KW + N+L E K +
Sbjct: 4 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLL 55
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
+ ++E +E SEE LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R
Sbjct: 56 SDSMLVEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLR 115
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTA 277
GGT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A
Sbjct: 116 TQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRA 175
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYL 331
I+DLDAHQGNG+E+DFM++ R++IM+ AK+AIR ++EL TED YL
Sbjct: 176 TIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYL 235
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
+K+E +E+SL+ PD++VYNAGTD+L D LG L+ISP GI++RDELVF R R VP
Sbjct: 236 DKVERNIEKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRHVP 295
Query: 392 IVMLTSGGYLKQTARIIADSILNLADLGLIS 422
I+M+TSGGY K+TARIIADSILNL LGLI
Sbjct: 296 ILMVTSGGYQKRTARIIADSILNLFGLGLIG 326
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 120 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 179
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 180 LDAHQ 184
>gi|348605146|ref|NP_001100080.2| histone deacetylase 11 [Rattus norvegicus]
gi|149036741|gb|EDL91359.1| histone deacetylase 11 (predicted), isoform CRA_a [Rattus
norvegicus]
gi|183985828|gb|AAI66430.1| Hdac11 protein [Rattus norvegicus]
Length = 347
Score = 364 bits (934), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 177/326 (54%), Positives = 230/326 (70%), Gaps = 15/326 (4%)
Query: 104 ESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNI 163
+ V + WPIVY P YN+ F LEKLHPFD+ KW + N+L E K ++ +
Sbjct: 9 QHVPEKRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLLSDGML 60
Query: 164 IEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGG 223
+E +E SEE LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R GG
Sbjct: 61 VEAREASEEDLLVVHTRRYLNELKWSFVVATITEIPPVIFLPNFLVQRKVLRPLRTQTGG 120
Query: 224 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDL 282
T+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+DL
Sbjct: 121 TIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDL 180
Query: 283 DAHQGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEA 336
DAHQGNG+E+DFM + R++IM+ AKEAIR ++EL TED+ YLEK+E
Sbjct: 181 DAHQGNGHERDFMGDKRVYIMDVYNRHIYPGDRFAKEAIRRKVELEWGTEDEEYLEKVER 240
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
+ RSL+ PD++VYNAGTDVL D LG L+ISP GI++RDE+VF R +PI+M+T
Sbjct: 241 NVRRSLQEHLPDVVVYNAGTDVLEGDRLGGLSISPAGIVKRDEVVFRVVRAHDIPILMVT 300
Query: 397 SGGYLKQTARIIADSILNLADLGLIS 422
SGGY K+TARIIADSILNL DLGLI
Sbjct: 301 SGGYQKRTARIIADSILNLHDLGLIG 326
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 120 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 179
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 180 LDAHQ 184
>gi|297669993|ref|XP_002813164.1| PREDICTED: histone deacetylase 11 isoform 1 [Pongo abelii]
Length = 347
Score = 363 bits (933), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 176/331 (53%), Positives = 234/331 (70%), Gaps = 15/331 (4%)
Query: 99 TSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI 158
T++ + V WPIVY P YN+ F LEKLHPFD+ KW + N+L E K +
Sbjct: 4 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLL 55
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
+ ++E +E SEE LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R
Sbjct: 56 SDSMLVEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLR 115
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTA 277
GGT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L ++ LF+ + IS A
Sbjct: 116 TQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIQFLFERVEGISRA 175
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYL 331
I+DLDAHQGNG+E+DFM++ R++IM+ AK+AIR ++EL TED YL
Sbjct: 176 TIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYL 235
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
+K+E +++SL+ PD++VYNAGTD+L D LG L+ISP GI++RDELVF R RRVP
Sbjct: 236 DKVERNIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVP 295
Query: 392 IVMLTSGGYLKQTARIIADSILNLADLGLIS 422
I+M+TSGGY K+TARIIADSILNL LGLI
Sbjct: 296 ILMVTSGGYQKRTARIIADSILNLFGLGLIG 326
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L ++ LF+ + IS A I+D
Sbjct: 120 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIQFLFERVEGISRATIID 179
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 180 LDAHQ 184
>gi|21450317|ref|NP_659168.1| histone deacetylase 11 [Mus musculus]
gi|26394805|sp|Q91WA3.1|HDA11_MOUSE RecName: Full=Histone deacetylase 11; Short=HD11
gi|16740659|gb|AAH16208.1| Histone deacetylase 11 [Mus musculus]
gi|26337759|dbj|BAC32565.1| unnamed protein product [Mus musculus]
gi|148666877|gb|EDK99293.1| histone deacetylase 11 [Mus musculus]
Length = 347
Score = 363 bits (933), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 177/326 (54%), Positives = 230/326 (70%), Gaps = 15/326 (4%)
Query: 104 ESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNI 163
+ V + WPIVY P YN+ F LEKLHPFD+ KW + N+L E K ++ +
Sbjct: 9 QHVPEKRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLLSDGML 60
Query: 164 IEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGG 223
+E +E SEE LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R GG
Sbjct: 61 VEAREASEEDLLVVHTRRYLNELKWSFVVATITEIPPVIFLPNFLVQRKVLRPLRTQTGG 120
Query: 224 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDL 282
T+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+DL
Sbjct: 121 TIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDL 180
Query: 283 DAHQGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEA 336
DAHQGNG+E+DFM + R++IM+ AKEAIR ++EL TED+ YLEK+E
Sbjct: 181 DAHQGNGHERDFMGDKRVYIMDVYNRHIYPGDRFAKEAIRRKVELEWGTEDEEYLEKVER 240
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
+ RSL+ PD++VYNAGTDVL D LG L+ISP GI++RDE+VF R +PI+M+T
Sbjct: 241 NVRRSLQEHLPDVVVYNAGTDVLEGDRLGGLSISPAGIVKRDEVVFRVVRAHDIPILMVT 300
Query: 397 SGGYLKQTARIIADSILNLADLGLIS 422
SGGY K+TARIIADSILNL DLGLI
Sbjct: 301 SGGYQKRTARIIADSILNLHDLGLIG 326
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 120 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 179
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 180 LDAHQ 184
>gi|260804797|ref|XP_002597274.1| hypothetical protein BRAFLDRAFT_203636 [Branchiostoma floridae]
gi|229282537|gb|EEN53286.1| hypothetical protein BRAFLDRAFT_203636 [Branchiostoma floridae]
Length = 339
Score = 363 bits (933), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 179/331 (54%), Positives = 230/331 (69%), Gaps = 19/331 (5%)
Query: 103 QESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDN 162
E + WPIVY +YN+ F LEKLHPFDS KW +F YL E+ + D+
Sbjct: 7 HEDIPQSKWPIVYSSDYNIGFLGLEKLHPFDSGKWGKVFRYL--------KESGLLKDDD 58
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
++ P E +EE LL+ H+ YL SLKWS VA I+EV P+ +PN+ VQ+ L+P+R G
Sbjct: 59 VVTPVEATEEDLLMVHSSGYLNSLKWSMVVAGITEVPPVALLPNFIVQRKLLKPLRLQTG 118
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 281
GT+ AG LA RGW++NIGGGFHH S +GGGFCAYADI+L +K LF+ + IS AMIVD
Sbjct: 119 GTVMAGKLATERGWALNIGGGFHHCSAERGGGFCAYADITLSIKFLFERMEGISKAMIVD 178
Query: 282 LDAHQGNGYEKDFMNETRIFIMETCI------TSKAKEAIRCRIELAPYTEDQHYLEKIE 335
LDAHQGNG+E+DF+N++R++IM+ S AK AIR ++EL YTED YL +
Sbjct: 179 LDAHQGNGHERDFINDSRVYIMDVYNRYIYPHDSYAKGAIRRKVELQAYTEDDRYLSLVR 238
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFM----KARERRVP 391
LE++L F PDIIVYNAGTDVL DPLG L+ISP+GI++RD+LVF K R R++P
Sbjct: 239 KNLEKALEEFNPDIIVYNAGTDVLEGDPLGALSISPEGIVQRDQLVFELARGKGRPRQIP 298
Query: 392 IVMLTSGGYLKQTARIIADSILNLADLGLIS 422
I+M+TSGGY K+TA+IIADSI NL GLIS
Sbjct: 299 ILMVTSGGYQKRTAQIIADSIKNLIAKGLIS 329
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA RGW++NIGGGFHH S +GGGFCAYADI+L +K LF+ + IS AMIVD
Sbjct: 119 GTVMAGKLATERGWALNIGGGFHHCSAERGGGFCAYADITLSIKFLFERMEGISKAMIVD 178
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 179 LDAHQ 183
>gi|432097765|gb|ELK27813.1| Histone deacetylase 11 [Myotis davidii]
Length = 360
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 179/331 (54%), Positives = 235/331 (70%), Gaps = 15/331 (4%)
Query: 99 TSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI 158
T++ + V WPIVY P YN+ F LEKLHPFD+ KW + ++L E K +
Sbjct: 21 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVISFL--------KEEKLL 72
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
+ ++E +E SEE LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ L+P+R
Sbjct: 73 SDGMLVEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLKPLR 132
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTA 277
GGT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A
Sbjct: 133 IQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRA 192
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYL 331
IVDLDAHQGNG+E+DFM + R++IM+ AK+AIR ++EL TED YL
Sbjct: 193 TIVDLDAHQGNGHERDFMGDQRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYL 252
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
+K+E L+R+L+ PDI+VYNAGTD+L D LG L+ISPQGI++RDELVF AR +VP
Sbjct: 253 DKVERNLKRALQEHPPDIMVYNAGTDILEGDRLGGLSISPQGIVKRDELVFRVARRCQVP 312
Query: 392 IVMLTSGGYLKQTARIIADSILNLADLGLIS 422
I+M+TSGGY K+TARIIADSILNL DLGLI
Sbjct: 313 ILMVTSGGYQKRTARIIADSILNLYDLGLIG 343
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A IVD
Sbjct: 137 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIVD 196
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 197 LDAHQ 201
>gi|390475353|ref|XP_002758694.2| PREDICTED: histone deacetylase 11 [Callithrix jacchus]
Length = 347
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 176/331 (53%), Positives = 233/331 (70%), Gaps = 15/331 (4%)
Query: 99 TSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI 158
T++ + V WPIVY P YN+ F LEKLHPFD+ KW + N+L E K +
Sbjct: 4 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLL 55
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
+ ++E +E SEE LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R
Sbjct: 56 SDSMLVEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLR 115
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTA 277
GGT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A
Sbjct: 116 TQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRA 175
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYL 331
I+DLDAHQGNG+E+DFM++ R++IM+ AK+AIR ++EL TED YL
Sbjct: 176 TIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYL 235
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
K+E +E++L+ PD++VYNAGTD+L D LG L+ISP GI++RDELVF R R+VP
Sbjct: 236 VKVERNIEKALQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRQVP 295
Query: 392 IVMLTSGGYLKQTARIIADSILNLADLGLIS 422
I+M+TSGGY K+TARIIADSILNL LGLI
Sbjct: 296 ILMVTSGGYQKRTARIIADSILNLFGLGLIG 326
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 120 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 179
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 180 LDAHQ 184
>gi|402859321|ref|XP_003894111.1| PREDICTED: histone deacetylase 11 isoform 1 [Papio anubis]
Length = 347
Score = 362 bits (928), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 176/331 (53%), Positives = 232/331 (70%), Gaps = 15/331 (4%)
Query: 99 TSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI 158
T++ + V WPIVY P YN+ F LEKLHPFD+ KW + N+L E K +
Sbjct: 4 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLL 55
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
+ ++E +E SEE LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R
Sbjct: 56 SDSMLVEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLR 115
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTA 277
GGT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A
Sbjct: 116 TQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRA 175
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYL 331
I+DLDAHQGNG+E+DFM++ R++IM+ AK+AIR ++EL TED YL
Sbjct: 176 TIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYL 235
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
+K+ +E+SL+ PD++VYNAGTD+L D LG L+ISP GI++RDELVF R R VP
Sbjct: 236 DKVGRNIEKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRHVP 295
Query: 392 IVMLTSGGYLKQTARIIADSILNLADLGLIS 422
I+M+TSGGY K+TARIIADSILNL LGLI
Sbjct: 296 ILMVTSGGYQKRTARIIADSILNLFGLGLIG 326
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 120 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 179
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 180 LDAHQ 184
>gi|301770641|ref|XP_002920740.1| PREDICTED: histone deacetylase 11-like [Ailuropoda melanoleuca]
Length = 411
Score = 361 bits (926), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 173/319 (54%), Positives = 229/319 (71%), Gaps = 15/319 (4%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
WPIVY P YN+ F LEKLHPFD+ KW + ++L E K ++ ++E +E S
Sbjct: 80 WPIVYSPRYNITFMGLEKLHPFDAGKWGKVISFL--------KEEKLLSDGMLVEAREAS 131
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+E LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ L+P+R GGT+ AG L
Sbjct: 132 DEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLKPLRTQTGGTIMAGKL 191
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNG 289
A+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A IVDLDAHQGNG
Sbjct: 192 AMERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIVDLDAHQGNG 251
Query: 290 YEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+E+DFM + R++IM+ AK+AIR ++EL TED YL+K+E L+++L+
Sbjct: 252 HERDFMGDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNLQKALQ 311
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD++VYNAGTD+L D LG L+ISPQGI++RDELVF R R+VPI+M+TSGGY K+
Sbjct: 312 EHLPDVLVYNAGTDILEGDRLGGLSISPQGIVKRDELVFRVVRGRQVPILMVTSGGYQKR 371
Query: 404 TARIIADSILNLADLGLIS 422
TARIIADSILNL LGLI
Sbjct: 372 TARIIADSILNLYSLGLIG 390
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A IVD
Sbjct: 184 GTIMAGKLAMERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIVD 243
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 244 LDAHQ 248
>gi|417399348|gb|JAA46694.1| Putative histone deacetylase [Desmodus rotundus]
Length = 347
Score = 360 bits (925), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 178/331 (53%), Positives = 232/331 (70%), Gaps = 15/331 (4%)
Query: 99 TSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI 158
TS+ + V WPIVY P YN+ F LEKLHPFD+ KW + ++L E K +
Sbjct: 4 TSQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVISFL--------KEEKLL 55
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
+ ++E +E S+E LL+ HT +YL LKWSF VA I+E+ PL+ +PN+ VQ+ L+P+R
Sbjct: 56 SDGMLVEAREASDEDLLVVHTRRYLNELKWSFAVATITEIPPLIFLPNFLVQRKVLKPLR 115
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTA 277
GGT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A
Sbjct: 116 TQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLTIKFLFERVEGISRA 175
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYL 331
IVDLDAHQGNG+E+DFM + R++IM+ AK+AIR ++EL TED YL
Sbjct: 176 TIVDLDAHQGNGHERDFMGDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYL 235
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
K+E LE++L+ PD++VYNAGTDVL D LG L+ISPQGI++RDELVF R +VP
Sbjct: 236 GKVERNLEKALQEHPPDVVVYNAGTDVLEGDRLGGLSISPQGIVKRDELVFRVVRGHQVP 295
Query: 392 IVMLTSGGYLKQTARIIADSILNLADLGLIS 422
I+M+TSGGY K+TARIIADSILNL LGLI
Sbjct: 296 ILMVTSGGYQKRTARIIADSILNLYGLGLIG 326
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A IVD
Sbjct: 120 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLTIKFLFERVEGISRATIVD 179
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 180 LDAHQ 184
>gi|432859825|ref|XP_004069255.1| PREDICTED: histone deacetylase 11-like [Oryzias latipes]
Length = 664
Score = 360 bits (924), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 179/330 (54%), Positives = 233/330 (70%), Gaps = 20/330 (6%)
Query: 99 TSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI 158
TS PQ + PIVY P+YN+ F LEKLHPFD+ KW + ++L E F+
Sbjct: 317 TSLPQTCL-----PIVYHPDYNITFMGLEKLHPFDAGKWGKVIHFLK--------EECFL 363
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
T +I+E +E +EE LL+ HT+ YLK LKWS VA I+E+ PL+ +PN+ VQ+ LRP+R
Sbjct: 364 TDADIVEAREATEEDLLVVHTKHYLKRLKWSVVVATITEIPPLLFLPNFLVQRKVLRPLR 423
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTA 277
GGT+ AG LA+ RGW+IN+GGGFHH S KGGGFCAYADI+L +K LF+ + IS A
Sbjct: 424 TQTGGTIMAGKLAVDRGWAINVGGGFHHCSSNKGGGFCAYADITLAIKFLFERVEGISKA 483
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCIT------SKAKEAIRCRIELAPYTEDQHYL 331
I+DLDAHQGNG+E+DF+ + R++IM+ + AK AIR ++EL TED YL
Sbjct: 484 TIIDLDAHQGNGHERDFLEDRRVYIMDVYNSHIYPGDGHAKRAIRRKVELDWGTEDSEYL 543
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
+K+E E +L PDIIVYNAGTD+L DPLG L+ISPQGI++RDE+VF A++R +P
Sbjct: 544 QKVELHCEGALNELRPDIIVYNAGTDILDGDPLGGLSISPQGIVKRDEIVFRAAKQRGIP 603
Query: 392 IVMLTSGGYLKQTARIIADSILNLADLGLI 421
I+M+TSGGY K+TARIIADSILNL GLI
Sbjct: 604 ILMVTSGGYQKRTARIIADSILNLRQQGLI 633
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S KGGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 428 GTIMAGKLAVDRGWAINVGGGFHHCSSNKGGGFCAYADITLAIKFLFERVEGISKATIID 487
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 488 LDAHQ 492
>gi|156120759|ref|NP_001095526.1| histone deacetylase 11 [Bos taurus]
gi|154757388|gb|AAI51742.1| HDAC11 protein [Bos taurus]
gi|296474662|tpg|DAA16777.1| TPA: histone deacetylase 11 [Bos taurus]
Length = 386
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 175/319 (54%), Positives = 228/319 (71%), Gaps = 15/319 (4%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
WPIVY P YN+ F LEKLHPFD+ KW + + L E K ++ ++E +E S
Sbjct: 16 WPIVYSPRYNITFLGLEKLHPFDAGKWGKVISLL--------KEEKLLSDSMLVEAREAS 67
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+E LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R GGT+ AG L
Sbjct: 68 DEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIMAGKL 127
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF-QSKSISTAMIVDLDAHQGNG 289
A+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF + + IS A IVDLDAHQGNG
Sbjct: 128 AVDRGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFDRVEGISKATIVDLDAHQGNG 187
Query: 290 YEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+E+DFM + R++IM+ AK+AIR ++EL TED YL+K+E LE++L+
Sbjct: 188 HERDFMGDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLQKVERNLEKALQ 247
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PDI+VYNAGTD+L D LG LAISPQG+++RDELVF R R++PI+M+TSGGY K+
Sbjct: 248 EHRPDIVVYNAGTDILEGDRLGGLAISPQGVVKRDELVFRIVRGRQLPILMVTSGGYQKR 307
Query: 404 TARIIADSILNLADLGLIS 422
TARIIADSILNL LGLI
Sbjct: 308 TARIIADSILNLYSLGLIG 326
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF-QSKSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF + + IS A IVD
Sbjct: 120 GTIMAGKLAVDRGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFDRVEGISKATIVD 179
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 180 LDAHQ 184
>gi|397511877|ref|XP_003826289.1| PREDICTED: histone deacetylase 11 isoform 1 [Pan paniscus]
Length = 348
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 177/332 (53%), Positives = 234/332 (70%), Gaps = 16/332 (4%)
Query: 99 TSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI 158
T++ + V WPIVY P YN+ F LEKLHPFD+ KW + N+L E K +
Sbjct: 4 TTQLYQHVPEARWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLL 55
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
+ ++E +E SEE LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R
Sbjct: 56 SDSMLVEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLR 115
Query: 219 YHVGGTLE-AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSIST 276
GGT + AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS
Sbjct: 116 TQTGGTHKLAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISR 175
Query: 277 AMIVDLDAHQGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHY 330
A I+DLDAHQGNG+E+DFM++ R++IM+ AK+AIR ++EL TED Y
Sbjct: 176 ATIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEY 235
Query: 331 LEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRV 390
L+K+E +++SL+ PD++VYNAGTD+L D LG L+ISP GI++RDELVF R RRV
Sbjct: 236 LDKVERNIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRV 295
Query: 391 PIVMLTSGGYLKQTARIIADSILNLADLGLIS 422
PI+M+TSGGY K+TARIIADSILNL LGLI
Sbjct: 296 PILMVTSGGYQKRTARIIADSILNLFGLGLIG 327
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
Query: 8 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAH 66
AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+DLDAH
Sbjct: 125 AGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAH 184
Query: 67 Q 67
Q
Sbjct: 185 Q 185
>gi|440903563|gb|ELR54202.1| Histone deacetylase 11, partial [Bos grunniens mutus]
Length = 386
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 175/319 (54%), Positives = 228/319 (71%), Gaps = 15/319 (4%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
WPIVY P YN+ F LEKLHPFD+ KW + + L E K ++ ++E +E S
Sbjct: 15 WPIVYSPRYNITFLGLEKLHPFDAGKWGKVISLL--------KEEKLLSDSMLVEAREAS 66
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+E LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R GGT+ AG L
Sbjct: 67 DEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIMAGKL 126
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF-QSKSISTAMIVDLDAHQGNG 289
A+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF + + IS A IVDLDAHQGNG
Sbjct: 127 AVDRGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFDRVEGISKATIVDLDAHQGNG 186
Query: 290 YEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+E+DFM + R++IM+ AK+AIR ++EL TED YL+K+E LE++L+
Sbjct: 187 HERDFMGDRRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLQKVERNLEKALQ 246
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PDI+VYNAGTD+L D LG LAISPQG+++RDELVF R R++PI+M+TSGGY K+
Sbjct: 247 EHRPDIVVYNAGTDILEGDRLGGLAISPQGVVKRDELVFRIVRGRQLPILMVTSGGYQKR 306
Query: 404 TARIIADSILNLADLGLIS 422
TARIIADSILNL LGLI
Sbjct: 307 TARIIADSILNLYSLGLIG 325
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF-QSKSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF + + IS A IVD
Sbjct: 119 GTIMAGKLAVDRGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFDRVEGISKATIVD 178
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 179 LDAHQ 183
>gi|431899765|gb|ELK07712.1| Histone deacetylase 11 [Pteropus alecto]
Length = 417
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 173/319 (54%), Positives = 229/319 (71%), Gaps = 15/319 (4%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
WPIVY P YN+ F LEKLHPFD+ KW + ++L E K ++ ++E +E S
Sbjct: 86 WPIVYSPRYNITFMGLEKLHPFDAGKWGKVISFL--------KEEKLLSDGMLVEAREAS 137
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+E LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ L+P+R GGT+ AG L
Sbjct: 138 DEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLKPLRTQTGGTIMAGKL 197
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNG 289
A+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A IVDLDAHQGNG
Sbjct: 198 AVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIVDLDAHQGNG 257
Query: 290 YEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+E+DFM + R++IM+ AK+AI+ ++EL TED YL+K+E LE++L+
Sbjct: 258 HERDFMGDKRVYIMDVYNRHIYPGDRFAKQAIKRKVELEWGTEDDEYLDKVERNLEKALQ 317
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD++VYNAGTD+L D LG L+ISPQGI++RDELVF R R+VPI+M+TSGGY K+
Sbjct: 318 EHPPDVVVYNAGTDILEGDRLGGLSISPQGIMKRDELVFRVVRGRQVPILMVTSGGYQKR 377
Query: 404 TARIIADSILNLADLGLIS 422
TARIIADSILNL LGLI
Sbjct: 378 TARIIADSILNLYGLGLIG 396
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 78/135 (57%), Gaps = 24/135 (17%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A IVD
Sbjct: 190 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIVD 249
Query: 63 LDAHQ-------------------FSDYYFP----SAHSIKRKRKVEFLKERKALEDEIT 99
LDAHQ ++ + +P + +IKRK ++E+ E D++
Sbjct: 250 LDAHQGNGHERDFMGDKRVYIMDVYNRHIYPGDRFAKQAIKRKVELEWGTEDDEYLDKVE 309
Query: 100 SEPQESVVTRPWPIV 114
++++ P +V
Sbjct: 310 RNLEKALQEHPPDVV 324
>gi|348556215|ref|XP_003463918.1| PREDICTED: histone deacetylase 11-like [Cavia porcellus]
Length = 488
Score = 358 bits (918), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 170/319 (53%), Positives = 228/319 (71%), Gaps = 15/319 (4%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
WPIVY P YN+ F LEKLHPFD+ KW + ++L E K ++ ++E +E S
Sbjct: 157 WPIVYSPRYNITFMGLEKLHPFDAGKWGKVISFL--------KEEKLLSDGMLVEAREAS 208
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
++ LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R GGT+ AG L
Sbjct: 209 DDDLLVVHTRRYLNELKWSFVVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIMAGKL 268
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNG 289
A+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+DLDAHQGNG
Sbjct: 269 AVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERMEGISRATIIDLDAHQGNG 328
Query: 290 YEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+E+DFM + R++IM+ AK+AIR ++EL TED+ YL K+E +ER+L+
Sbjct: 329 HERDFMGDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDEEYLSKVERNVERALQ 388
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD++VYNAGTD+L D LG L+ISP GI++RDE+VF R ++PI+M+TSGGY K+
Sbjct: 389 EHLPDVVVYNAGTDILEGDRLGGLSISPGGIVKRDEVVFRLVRAHQIPILMVTSGGYQKR 448
Query: 404 TARIIADSILNLADLGLIS 422
TARIIADSILNL DLGLI
Sbjct: 449 TARIIADSILNLHDLGLIG 467
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 261 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERMEGISRATIID 320
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 321 LDAHQ 325
>gi|291230574|ref|XP_002735241.1| PREDICTED: histone deacetylase 11-like [Saccoglossus kowalevskii]
Length = 376
Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 177/327 (54%), Positives = 221/327 (67%), Gaps = 15/327 (4%)
Query: 105 SVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNII 164
V R WPIVY +YN+ F LEKLHPFD+ KW ++ +L E + D II
Sbjct: 30 DVSDRQWPIVYSQDYNIGFLGLEKLHPFDAGKWGKVYAFL--------KEDGMLRDDTII 81
Query: 165 EPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGT 224
P+E E+ L + HT++YL SLKWS NVA I+EV P+ +PN+ VQ+ L+P R GGT
Sbjct: 82 APREAGEKDLSVIHTKRYLDSLKWSVNVATITEVPPVAFLPNFIVQRKVLKPFRIQTGGT 141
Query: 225 LEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF-QSKSISTAMIVDLD 283
+ A LA+ RGW+INIGGGFHH S +GGGFCAYADISL +K LF + AMIVDLD
Sbjct: 142 ILAAKLAIERGWAINIGGGFHHCSGDRGGGFCAYADISLAIKFLFDRDPKTKKAMIVDLD 201
Query: 284 AHQGNGYEKDFMNETRIFIMETCI------TSKAKEAIRCRIELAPYTEDQHYLEKIEAG 337
AHQGNG+E+DFM + R++ M+ AK I ++EL +TED YLEK++
Sbjct: 202 AHQGNGHERDFMEDDRVYTMDVYNRHIYPHDGFAKRGINRKVELMSWTEDAEYLEKVKMN 261
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
LE SL F PDIIVYNAGTD+L DPLG L+ISPQGII RD++VF AR R++PI+M+TS
Sbjct: 262 LELSLGEFVPDIIVYNAGTDILDGDPLGALSISPQGIIERDQIVFEAARSRKIPILMVTS 321
Query: 398 GGYLKQTARIIADSILNLADLGLISRP 424
GGY K+TARIIADSILNL LI P
Sbjct: 322 GGYQKRTARIIADSILNLKTHELIGCP 348
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF-QSKSISTAMIVD 62
GT+ A LA+ RGW+INIGGGFHH S +GGGFCAYADISL +K LF + AMIVD
Sbjct: 140 GTILAAKLAIERGWAINIGGGFHHCSGDRGGGFCAYADISLAIKFLFDRDPKTKKAMIVD 199
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 200 LDAHQ 204
>gi|156393770|ref|XP_001636500.1| predicted protein [Nematostella vectensis]
gi|156223604|gb|EDO44437.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 178/325 (54%), Positives = 223/325 (68%), Gaps = 19/325 (5%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
WPIVY YN+ F LE+LHPFDS KW +FN L EAK I ++EP+EVS
Sbjct: 33 WPIVYSSGYNIGFMGLERLHPFDSGKWGRVFNML--------KEAKLIDDSTVVEPREVS 84
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
E LLI HT+KYL SLKWS VA I EV P+ +PN+ VQ LRP+R GGT+ A L
Sbjct: 85 REDLLIVHTKKYLDSLKWSVVVAQICEVPPVAFLPNFIVQHKLLRPLRLQTGGTILAAKL 144
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNG 289
A+ RGW+INIGGGFHH S T GGGFCAYADISL V LF S+ MI+DLDAHQGNG
Sbjct: 145 AMERGWAINIGGGFHHCSGTSGGGFCAYADISLAVMFLFNHFDSVKKVMIIDLDAHQGNG 204
Query: 290 YEKDFMNETRIFIMET--------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERS 341
+E DF+ E R++IM+ C+ K K AI+ ++L +T D YL I+ + +
Sbjct: 205 HEADFIKEERVYIMDAYNSHIYPGCM--KVKSAIKRDVQLENFTTDSEYLPLIKWHVPEA 262
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYL 401
L FCPD I+YNAGTD+L DPLG L+I+P+GII+RD++VF +AR R +PI+M+TSGGY
Sbjct: 263 LDEFCPDAIIYNAGTDILEGDPLGSLSITPKGIIQRDQIVFQEARSRSIPIMMVTSGGYQ 322
Query: 402 KQTARIIADSILNLADLGLISRPYN 426
++TARIIADSILNL + GLIS Y+
Sbjct: 323 RRTARIIADSILNLHEQGLISCNYS 347
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ A LA+ RGW+INIGGGFHH S T GGGFCAYADISL V LF S+ MI+D
Sbjct: 137 GTILAAKLAMERGWAINIGGGFHHCSGTSGGGFCAYADISLAVMFLFNHFDSVKKVMIID 196
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 197 LDAHQ 201
>gi|149728400|ref|XP_001489672.1| PREDICTED: histone deacetylase 11-like [Equus caballus]
Length = 347
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 173/319 (54%), Positives = 227/319 (71%), Gaps = 15/319 (4%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
WPIVY P YN+ F LEKLHPFD+ KW + ++L E ++ ++E +E S
Sbjct: 16 WPIVYSPRYNITFMGLEKLHPFDAGKWGKVISFL--------KEENLLSDSMLVEAREAS 67
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+E LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ L+P+R GGT+ AG L
Sbjct: 68 DEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLKPLRTQTGGTIMAGKL 127
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNG 289
A+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A IVDLDAHQGNG
Sbjct: 128 AVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIVDLDAHQGNG 187
Query: 290 YEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+E+DFMN+ R++IM+ AK+AIR ++EL TED YL K+E L+++L+
Sbjct: 188 HERDFMNDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLGKVERNLKKALQ 247
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD++VYNAGTDVL D LG L+ISPQGI++RDELVF R +VPI+M+TSGGY K+
Sbjct: 248 EHPPDVVVYNAGTDVLEGDRLGGLSISPQGIVKRDELVFRIVRGLQVPILMVTSGGYQKR 307
Query: 404 TARIIADSILNLADLGLIS 422
TARIIADSILNL LGLI
Sbjct: 308 TARIIADSILNLCGLGLIG 326
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A IVD
Sbjct: 120 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIVD 179
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 180 LDAHQ 184
>gi|348518091|ref|XP_003446565.1| PREDICTED: histone deacetylase 11-like [Oreochromis niloticus]
Length = 367
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 173/317 (54%), Positives = 226/317 (71%), Gaps = 15/317 (4%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY P+YN+ F LEKLHPFD+ KW + +L E +FI N++E +E +E
Sbjct: 28 PIVYHPDYNITFMGLEKLHPFDAGKWGKVIRFL--------KEEQFINDGNLVEAREAAE 79
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E LL+ HT++YL LKWS VA I+E+ PL+ +PN+ VQ+ LRP+R GGT+ AG LA
Sbjct: 80 EDLLVVHTKRYLNRLKWSLVVATITEIPPLLFLPNFLVQRKVLRPLRTQTGGTIMAGKLA 139
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNGY 290
+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS I+DLDAHQGNG+
Sbjct: 140 VERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRVTIIDLDAHQGNGH 199
Query: 291 EKDFMNETRIFIMETCI------TSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRS 344
E+DF+++ R+FIM+ AK AI+ ++EL TED YL+K+E +E +L
Sbjct: 200 ERDFLDDRRVFIMDMYNRYIYPGDEYAKRAIKRKVELDWGTEDSEYLQKVELHMEGTLNE 259
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT 404
PDIIVYNAGTD+L DPLG L+ISPQGII+RDELVF A+ R +P++M+TSGGY K+T
Sbjct: 260 VLPDIIVYNAGTDILDGDPLGGLSISPQGIIKRDELVFRAAKRRGIPVLMVTSGGYQKKT 319
Query: 405 ARIIADSILNLADLGLI 421
ARIIADSILNL GLI
Sbjct: 320 ARIIADSILNLHRQGLI 336
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 63/106 (59%), Gaps = 22/106 (20%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS I+D
Sbjct: 131 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRVTIID 190
Query: 63 LDAHQ-------------------FSDYYFPSAHSIKR--KRKVEF 87
LDAHQ ++ Y +P KR KRKVE
Sbjct: 191 LDAHQGNGHERDFLDDRRVFIMDMYNRYIYPGDEYAKRAIKRKVEL 236
>gi|281344338|gb|EFB19922.1| hypothetical protein PANDA_009507 [Ailuropoda melanoleuca]
Length = 345
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 173/331 (52%), Positives = 232/331 (70%), Gaps = 15/331 (4%)
Query: 99 TSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI 158
T++ + V WPIVY P YN+ F LEKLHPFD+ KW + ++L E K +
Sbjct: 2 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVISFL--------KEEKLL 53
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
+ ++E +E S+E LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ L+P+R
Sbjct: 54 SDGMLVEAREASDEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLKPLR 113
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTA 277
GGT+ LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A
Sbjct: 114 TQTGGTIMVRKLAMERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRA 173
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYL 331
IVDLDAHQGNG+E+DFM + R++IM+ AK+AIR ++EL TED YL
Sbjct: 174 TIVDLDAHQGNGHERDFMGDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYL 233
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
+K+E L+++L+ PD++VYNAGTD+L D LG L+ISPQGI++RDELVF R R+VP
Sbjct: 234 DKVERNLQKALQEHLPDVLVYNAGTDILEGDRLGGLSISPQGIVKRDELVFRVVRGRQVP 293
Query: 392 IVMLTSGGYLKQTARIIADSILNLADLGLIS 422
I+M+TSGGY K+TARIIADSILNL LGLI
Sbjct: 294 ILMVTSGGYQKRTARIIADSILNLYSLGLIG 324
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A IVD
Sbjct: 118 GTIMVRKLAMERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIVD 177
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 178 LDAHQ 182
>gi|395516785|ref|XP_003762566.1| PREDICTED: histone deacetylase 11 [Sarcophilus harrisii]
Length = 331
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 169/319 (52%), Positives = 230/319 (72%), Gaps = 15/319 (4%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
WPI+Y P YN+ F LEKLHPFD+ KW + ++L E F+T I+E +E +
Sbjct: 16 WPIIYSPRYNITFMGLEKLHPFDAGKWGKVVHFL--------KEENFLTDVMIVEAREAT 67
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
EE L + HT++YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R GGT+ AG L
Sbjct: 68 EEDLRVVHTQRYLNKLKWSFVVATITEIPPVICLPNFLVQRHVLRPLRTQTGGTIMAGKL 127
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNG 289
A+ RGW+INIGGGFHH S +GGGFCAYADISL +K LF+ + +S A I+DLDAHQGNG
Sbjct: 128 AIERGWAINIGGGFHHCSSDRGGGFCAYADISLSIKFLFERVEGVSKATIIDLDAHQGNG 187
Query: 290 YEKDFMNETRIFIMETCI------TSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+E+DFM+++R++IM+ S AK AI+ +IEL T D+ YL+K+ +E +L+
Sbjct: 188 HERDFMDDSRVYIMDIYNRNIYPGDSFAKRAIKRKIELEWGTGDREYLQKVTQHVEEALK 247
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD+++YNAGTDVL DPLG L++S +GI++RDELVF AR+ +PI+M+TSGGY K+
Sbjct: 248 EHKPDVVIYNAGTDVLEGDPLGGLSVSARGIVKRDELVFQAARKHNIPILMVTSGGYQKE 307
Query: 404 TARIIADSILNLADLGLIS 422
+ARIIADSILNL +LGLI
Sbjct: 308 SARIIADSILNLFNLGLID 326
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+INIGGGFHH S +GGGFCAYADISL +K LF+ + +S A I+D
Sbjct: 120 GTIMAGKLAIERGWAINIGGGFHHCSSDRGGGFCAYADISLSIKFLFERVEGVSKATIID 179
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 180 LDAHQ 184
>gi|395847170|ref|XP_003796256.1| PREDICTED: histone deacetylase 11 [Otolemur garnettii]
Length = 347
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 173/319 (54%), Positives = 225/319 (70%), Gaps = 15/319 (4%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
WPIVY P YN+ F LEKLHPFD+ KW + N+L E K ++ ++E +E S
Sbjct: 16 WPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLLSDCMLVEAKEAS 67
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
EE LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R GGT+ AG L
Sbjct: 68 EEDLLVVHTRRYLNELKWSFVVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIMAGKL 127
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF-QSKSISTAMIVDLDAHQGNG 289
A+ RGW+IN+GGGFHH S +GGGFCAYADISL +K LF + + IS A I+DLDAHQGNG
Sbjct: 128 AVERGWAINVGGGFHHCSSDRGGGFCAYADISLAIKFLFDRVEGISRATIIDLDAHQGNG 187
Query: 290 YEKDFMNETRIFIMETCITSK------AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+E+DFM++ R++IM+ AK+AIR ++EL ED YL K+E + ++L
Sbjct: 188 HERDFMDDQRVYIMDVYNRHIYPGDRFAKQAIRRKVELDWGVEDAEYLNKVETNIRKALM 247
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD++VYNAGTD+L D LG L+ISP GI++RDELVF R +VPI+M+TSGGY K+
Sbjct: 248 EHLPDVVVYNAGTDILEGDRLGGLSISPGGIVKRDELVFQIVRGCQVPILMVTSGGYQKR 307
Query: 404 TARIIADSILNLADLGLIS 422
TARIIADSILNL DLGLI
Sbjct: 308 TARIIADSILNLYDLGLIG 326
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF-QSKSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADISL +K LF + + IS A I+D
Sbjct: 120 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADISLAIKFLFDRVEGISRATIID 179
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 180 LDAHQ 184
>gi|50344998|ref|NP_001002171.1| histone deacetylase 11 [Danio rerio]
gi|49256677|gb|AAH74052.1| Zgc:91942 [Danio rerio]
gi|182892122|gb|AAI65866.1| Zgc:91942 protein [Danio rerio]
Length = 366
Score = 351 bits (900), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 172/318 (54%), Positives = 224/318 (70%), Gaps = 15/318 (4%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY PEYN+ F LEKLHPFD+ KW + +L E +FIT + I+ +E SE
Sbjct: 28 PIVYSPEYNITFMGLEKLHPFDAGKWGKVIRFL--------KEEQFITDEIIVLAREASE 79
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
LL+ HT +YL LKWS VA I+E+ PL+ +PN+ VQ+ LRP+R GGT+ AG LA
Sbjct: 80 ADLLVVHTARYLNRLKWSLVVATITEIPPLLFLPNFLVQRKVLRPLRTQTGGTIMAGKLA 139
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNGY 290
+ RGW+IN+GGGFHH S KGGGFCAYADI+L +K LF+ + +++A I+DLDAHQGNG+
Sbjct: 140 IDRGWAINVGGGFHHCSSDKGGGFCAYADITLAIKFLFERVEGVASATIIDLDAHQGNGH 199
Query: 291 EKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRS 344
E+DF+ + R++IM+ AK AI+ ++EL TED YL+K++ E +L
Sbjct: 200 ERDFLEDRRVYIMDVYNRHIYPGDGYAKRAIKRKVELDWGTEDSEYLQKVDLHSEGALNE 259
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT 404
PDII+YNAGTD+L DPLG LAISPQGII+RDE++F AR R +PI+M+TSGGY K+T
Sbjct: 260 ARPDIIIYNAGTDILDGDPLGGLAISPQGIIKRDEIIFRAARRRGIPILMVTSGGYQKKT 319
Query: 405 ARIIADSILNLADLGLIS 422
ARIIADSILNL GLI
Sbjct: 320 ARIIADSILNLHRQGLIG 337
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 53/65 (81%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S KGGGFCAYADI+L +K LF+ + +++A I+D
Sbjct: 131 GTIMAGKLAIDRGWAINVGGGFHHCSSDKGGGFCAYADITLAIKFLFERVEGVASATIID 190
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 191 LDAHQ 195
>gi|332231745|ref|XP_003265055.1| PREDICTED: histone deacetylase 11 isoform 1 [Nomascus leucogenys]
Length = 319
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 167/304 (54%), Positives = 221/304 (72%), Gaps = 15/304 (4%)
Query: 126 LEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKS 185
LEKLHPFD+ KW + N+L E K ++ + ++E +E SEE LL+ HT +YL
Sbjct: 3 LEKLHPFDAGKWGKVINFL--------KEEKLLSDNMLVEAREASEEDLLVVHTRRYLNE 54
Query: 186 LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFH 245
LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R GGT+ AG LA+ RGW+IN+GGGFH
Sbjct: 55 LKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIMAGKLAVERGWAINVGGGFH 114
Query: 246 HASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNGYEKDFMNETRIFIME 304
H S +GGGFCAYADI+L +K LF+ + IS A I+DLDAHQGNG+E+DFM++ R++IM+
Sbjct: 115 HCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAHQGNGHERDFMDDKRVYIMD 174
Query: 305 T------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDV 358
AK+AIR ++EL TED YL+K+E +++SL+ PD++VYNAGTD+
Sbjct: 175 VYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIKKSLQEHLPDVVVYNAGTDI 234
Query: 359 LLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADL 418
L D LG L+ISP GI++RDELVF R RRVPI+M+TSGGY K+TARIIADSILNL DL
Sbjct: 235 LEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVTSGGYQKRTARIIADSILNLFDL 294
Query: 419 GLIS 422
GLI
Sbjct: 295 GLIG 298
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 92 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 151
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 152 LDAHQ 156
>gi|443694557|gb|ELT95657.1| hypothetical protein CAPTEDRAFT_197333 [Capitella teleta]
Length = 377
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 177/352 (50%), Positives = 224/352 (63%), Gaps = 51/352 (14%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
WPIVY PEYN+ F LEKLHPFDS KW ++ +L EAK I I++P+E
Sbjct: 27 WPIVYSPEYNIAFLGLEKLHPFDSGKWGRVYEFLK--------EAKMIYDYTIVKPKEAQ 78
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGT------ 224
LL+ H+ +Y+ +L+WS NVA+I+EV P+ VPN+ VQK LRP RY GGT
Sbjct: 79 TIDLLVVHSMRYISTLRWSMNVASITEVPPVALVPNFIVQKKVLRPFRYQTGGTILIPDP 138
Query: 225 --------------------------LEAGFLALRRGWSINIGGGFHHASETKGGGFCAY 258
L A LA+ RGWSINIGGGFHH KGGGFCAY
Sbjct: 139 TCSIVKYVIGFFVYTLVSMEIDQEVELTAAKLAVERGWSINIGGGFHHCCAEKGGGFCAY 198
Query: 259 ADISLLVKLLFQ-SKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK------- 310
ADI+L ++ L Q + +IS MIVDLDAHQGNG+ +DFM+E ++I++ I ++
Sbjct: 199 ADITLAIRFLLQRTSTISKVMIVDLDAHQGNGHARDFMDEDGVYILD--IYNRQIYPRDG 256
Query: 311 -AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAI 369
AK IR ++EL +TED+ YL K+ +E +L F PD++VYNAGTDVL DPLGLL+I
Sbjct: 257 FAKRGIRRKVELEAFTEDEEYLRKVRNNVEGALNEFEPDLVVYNAGTDVLEGDPLGLLSI 316
Query: 370 SPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLI 421
+PQGII RD++VF K R R +PIVM+TSGGY TARIIADSILNL L LI
Sbjct: 317 TPQGIIERDQIVFQKVRTRGIPIVMVTSGGYQPTTARIIADSILNLRALSLI 368
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 6 LEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQ-SKSISTAMIVDLD 64
L A LA+ RGWSINIGGGFHH KGGGFCAYADI+L ++ L Q + +IS MIVDLD
Sbjct: 165 LTAAKLAVERGWSINIGGGFHHCCAEKGGGFCAYADITLAIRFLLQRTSTISKVMIVDLD 224
Query: 65 AHQ 67
AHQ
Sbjct: 225 AHQ 227
>gi|334338492|ref|XP_003341796.1| PREDICTED: histone deacetylase 11-like [Monodelphis domestica]
Length = 476
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 169/318 (53%), Positives = 226/318 (71%), Gaps = 15/318 (4%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
WPIVY P+YN+ F LEKLHPFD +KW + + L E F++ I+E QEVS
Sbjct: 163 WPIVYSPKYNIKFLGLEKLHPFDVEKWGRVVHLL--------KEGNFLSDVMIVEAQEVS 214
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
EE L +AHTE+YL+ LK SF+VA I E+ P+ +PN+ VQ+ LRP+R+ GGT+ AG L
Sbjct: 215 EEDLKVAHTEQYLRKLKCSFSVAKIIEMLPIAFIPNFLVQRTVLRPLRFQTGGTIMAGKL 274
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNG 289
A+ GW+INIGGGFHH S ++GG FC YADI+L +K LF+ IS I+DLDAHQGNG
Sbjct: 275 AVDYGWAINIGGGFHHCSGSRGGRFCIYADITLCIKFLFERVAGISRVTIIDLDAHQGNG 334
Query: 290 YEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+E DF++++R++IM+ S AK AIR +EL TED+ YLEK++ LE +L
Sbjct: 335 HETDFLDDSRVYIMDVYNYHIYPYDSIAKRAIRQMVELDWNTEDEEYLEKVKEHLEMALD 394
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ P +++YNAGTD+++ DPLG L++SP+GI+ RDELVF R+ VPI+M+TSGGY KQ
Sbjct: 395 EWLPHLVIYNAGTDIMVGDPLGGLSVSPEGIVMRDELVFRTVRKYGVPILMVTSGGYQKQ 454
Query: 404 TARIIADSILNLADLGLI 421
TAR+IADSILNL +GLI
Sbjct: 455 TARVIADSILNLYSMGLI 472
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ GW+INIGGGFHH S ++GG FC YADI+L +K LF+ IS I+D
Sbjct: 267 GTIMAGKLAVDYGWAINIGGGFHHCSGSRGGRFCIYADITLCIKFLFERVAGISRVTIID 326
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 327 LDAHQ 331
>gi|11611547|dbj|BAB18987.1| hypothetical protein [Macaca fascicularis]
Length = 319
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 166/304 (54%), Positives = 218/304 (71%), Gaps = 15/304 (4%)
Query: 126 LEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKS 185
LEKLHPFD+ KW + N+L E K ++ ++E +E SEE LL+ HT +YL
Sbjct: 3 LEKLHPFDAGKWGKVINFL--------KEEKLLSDSMLVEAREASEEDLLVVHTRRYLNE 54
Query: 186 LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFH 245
LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R GGT+ AG LA+ RGW+IN+GGGFH
Sbjct: 55 LKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIMAGKLAVERGWAINVGGGFH 114
Query: 246 HASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNGYEKDFMNETRIFIME 304
H S +GGGFCAYADI+L +K LF+ + IS A I+DLDAHQGNG+E+DFM++ R++IM+
Sbjct: 115 HCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAHQGNGHERDFMDDKRVYIMD 174
Query: 305 T------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDV 358
AK+AIR ++EL TED YL+K+E +E+SL+ PD++VYNAGTD+
Sbjct: 175 VYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIEKSLQEHLPDVVVYNAGTDI 234
Query: 359 LLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADL 418
L D LG L+ISP GI++RDELVF R R VPI+M+TSGGY K+TARIIADSILNL L
Sbjct: 235 LEGDRLGGLSISPAGIVKRDELVFRMVRGRHVPILMVTSGGYQKRTARIIADSILNLFGL 294
Query: 419 GLIS 422
GLI
Sbjct: 295 GLIG 298
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 92 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 151
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 152 LDAHQ 156
>gi|449473359|ref|XP_002192262.2| PREDICTED: histone deacetylase 11 [Taeniopygia guttata]
Length = 371
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 167/313 (53%), Positives = 219/313 (69%), Gaps = 19/313 (6%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
WPIVY P+YN+ F LEKLHPFD+ KW + N+L E K I D I++ +E +
Sbjct: 27 WPIVYSPDYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLIADDLIVQAREAT 78
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+E LL+ HT +YL LKWSF VA I+E+ P+ +PN+ VQ+ L+P+R GGT+ AG L
Sbjct: 79 DEDLLVVHTRRYLNKLKWSFVVATITEIPPVAFLPNFIVQRKVLKPLRTQTGGTIMAGKL 138
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNG 289
A+ RGW+IN+GGGFHH S KGGGFCAYADI+L +K LF+ + +S A I+DLDAHQGNG
Sbjct: 139 AVDRGWAINVGGGFHHCSSDKGGGFCAYADITLAIKFLFERVQGVSRATIIDLDAHQGNG 198
Query: 290 YEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+E+DFM++ R++IM+ AK AI+ ++EL TED YL+K+ +E +L
Sbjct: 199 HERDFMDDPRVYIMDAYNRYIYPGDGFAKRAIKRKVELEWGTEDTEYLQKVHTHVEGALN 258
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQ-GIIRRDELV---FMKARERRVPIVMLTSGG 399
F PDI+VYNAGTDVL DPLG LAISPQ GI++RDE+V F R VP++M+TSGG
Sbjct: 259 EFKPDIVVYNAGTDVLDGDPLGGLAISPQVGIVKRDEVVFRWFQGHRSPGVPVLMVTSGG 318
Query: 400 YLKQTARIIADSI 412
Y K+TARIIADSI
Sbjct: 319 YQKRTARIIADSI 331
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 64/106 (60%), Gaps = 22/106 (20%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S KGGGFCAYADI+L +K LF+ + +S A I+D
Sbjct: 131 GTIMAGKLAVDRGWAINVGGGFHHCSSDKGGGFCAYADITLAIKFLFERVQGVSRATIID 190
Query: 63 LDAHQ-------------------FSDYYFPSAHSIKR--KRKVEF 87
LDAHQ ++ Y +P KR KRKVE
Sbjct: 191 LDAHQGNGHERDFMDDPRVYIMDAYNRYIYPGDGFAKRAIKRKVEL 236
>gi|347966468|ref|XP_321350.5| AGAP001736-PA [Anopheles gambiae str. PEST]
gi|333470046|gb|EAA00854.5| AGAP001736-PA [Anopheles gambiae str. PEST]
Length = 361
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 168/319 (52%), Positives = 221/319 (69%), Gaps = 16/319 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVYRPEY V F L+KLHPFD+ K +I+ L N L++ T ++ P E++
Sbjct: 46 PIVYRPEYGVRFLGLQKLHPFDAAKGGNIYRLLKT---NGLIQ----TDGDVYAPNEITL 98
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E+LL HT++Y+ SLKWS NVA I+E+ PL+ VPN FVQ+ YLRPMRY GG+L A A
Sbjct: 99 EELLAVHTQRYIDSLKWSLNVAKIAEIPPLLFVPNCFVQRSYLRPMRYQTGGSLLAARAA 158
Query: 232 LRRG--WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGN 288
L G W+IN+GGGFHH S +GGGFC YADI+L VK+L S K I +IVDLDAHQGN
Sbjct: 159 LESGLGWAINLGGGFHHCSADRGGGFCPYADITLAVKMLQSSGKGIERILIVDLDAHQGN 218
Query: 289 GYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSL 342
GYE+D M + R+FI++ AK AIR +EL P+T+D+ YL K++ L +S+
Sbjct: 219 GYERDLMEDRRVFILDMYNYRIYPRDQHAKLAIRRAVELKPHTDDEEYLRKLKHCLSQSI 278
Query: 343 RSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402
F P+ I+YNAGTD+L DPLGLL I+P+G++ RDE VF A ER +P+VML SGGYL+
Sbjct: 279 AEFEPNFIIYNAGTDILKGDPLGLLDITPEGVVERDEFVFRSALERSIPLVMLLSGGYLR 338
Query: 403 QTARIIADSILNLADLGLI 421
+AR+IA+SI+NL D L+
Sbjct: 339 SSARVIANSIVNLRDKALL 357
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 4 GTLEAGFLALRRG--WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMI 60
G+L A AL G W+IN+GGGFHH S +GGGFC YADI+L VK+L S K I +I
Sbjct: 150 GSLLAARAALESGLGWAINLGGGFHHCSADRGGGFCPYADITLAVKMLQSSGKGIERILI 209
Query: 61 VDLDAHQFSDY 71
VDLDAHQ + Y
Sbjct: 210 VDLDAHQGNGY 220
>gi|289742065|gb|ADD19780.1| putative histone deacetylase [Glossina morsitans morsitans]
Length = 359
Score = 337 bits (863), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 169/319 (52%), Positives = 220/319 (68%), Gaps = 15/319 (4%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
+PIVY +Y VHF KLEKLHPFD++K KHI L EAK I EP E+S
Sbjct: 47 FPIVYSKQYGVHFGKLEKLHPFDAQKGKHIAKLL--------NEAKLIENWKFYEPLEIS 98
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+E+LL HT +YL+SL WS N A ISE+ L VPN FVQ YL+PMR+ G++ AG L
Sbjct: 99 KEELLKVHTPEYLRSLNWSINAAKISEIPLLAFVPNCFVQCGYLKPMRFQTAGSILAGKL 158
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKS-ISTAMIVDLDAHQGNG 289
AL GW+IN+GGGFHH +GGGFCAYADI+LL++ F +S I MI+DLDAHQGNG
Sbjct: 159 ALDHGWAINLGGGFHHCCSYRGGGFCAYADITLLIQRTFAEESYIKKIMIIDLDAHQGNG 218
Query: 290 YEKDFMNETRIFIME---TCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+E+DF+N + ++IM+ CI K AK AI C +EL P TED YL ++ GL+ +L
Sbjct: 219 HERDFLNNSNVYIMDMYNVCIYPKDEPAKLAIDCGVELLPKTEDAEYLRYLKRGLQFALN 278
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
F P ++VYNAGTD+LL DPLG L+I+P+G+I RD VF R +++PIVML SGGYLK
Sbjct: 279 EFRPQLVVYNAGTDILLGDPLGALSITPEGVIERDRFVFSTCRSQKIPIVMLLSGGYLKS 338
Query: 404 TARIIADSILNLADLGLIS 422
+A++IA+SI+NL L++
Sbjct: 339 SAKVIAESIINLKHQDLLT 357
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKS-ISTAMIVD 62
G++ AG LAL GW+IN+GGGFHH +GGGFCAYADI+LL++ F +S I MI+D
Sbjct: 151 GSILAGKLALDHGWAINLGGGFHHCCSYRGGGFCAYADITLLIQRTFAEESYIKKIMIID 210
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 211 LDAHQ 215
>gi|405959181|gb|EKC25242.1| Histone deacetylase 11 [Crassostrea gigas]
Length = 358
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 170/347 (48%), Positives = 222/347 (63%), Gaps = 30/347 (8%)
Query: 97 EITSEPQESVV---TRP--WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNY 151
E T E E+ + RP WPI+Y PEYN+ F LEKLHPFD+ KW ++ +L
Sbjct: 7 ETTRELHETSLYQEIRPTQWPIIYSPEYNIGFLGLEKLHPFDAGKWGKVYGFL------- 59
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLK----------WSFNVAAISEVCPL 201
+A I D + E +E LL+ HT+ YL +LK WS NVA I+EV P+
Sbjct: 60 -KDAGMIRDDTTVRATEATERDLLVVHTKGYLNNLKLSSIIEGVDEWSINVAQITEVPPV 118
Query: 202 VAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADI 261
+PN+ VQ+ LRP RYH GGT+ AG LA RGW+INIGGGFHH S +GGGFCAYADI
Sbjct: 119 ALLPNFIVQRKVLRPFRYHTGGTILAGKLAQERGWAINIGGGFHHCSADRGGGFCAYADI 178
Query: 262 SLLVKLLFQS-KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCI------TSKAKEA 314
+L + +F + IS +I+DLDAHQGNG+E+DFM++ R++IM+ AK A
Sbjct: 179 TLSIHFMFDRLQGISKVLIIDLDAHQGNGHERDFMDDKRVYIMDVYNRGIYPHDGYAKRA 238
Query: 315 IRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGI 374
I ++EL +T+D+ YL ++ +L F PD +VYNAGTD+L DPLG L+I+ QGI
Sbjct: 239 INKKVELQHFTDDKVYLALVDRHTTEALDEFQPDAVVYNAGTDILEGDPLGNLSITAQGI 298
Query: 375 IRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLI 421
I RD LVF R R +PI+M+TSGGY + TARIIADS+LNL GLI
Sbjct: 299 IERDRLVFSHVRSRNIPIMMVTSGGYQRSTARIIADSVLNLKKQGLI 345
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA RGW+INIGGGFHH S +GGGFCAYADI+L + +F + IS +I+D
Sbjct: 140 GTILAGKLAQERGWAINIGGGFHHCSADRGGGFCAYADITLSIHFMFDRLQGISKVLIID 199
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 200 LDAHQ 204
>gi|170030566|ref|XP_001843159.1| histone deacetylase 11 [Culex quinquefasciatus]
gi|167867835|gb|EDS31218.1| histone deacetylase 11 [Culex quinquefasciatus]
Length = 350
Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 172/336 (51%), Positives = 225/336 (66%), Gaps = 21/336 (6%)
Query: 100 SEPQESVVTRP-WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI 158
E Q V +P PIVYR EY V F L++LHPFD+ K +IF L +L+
Sbjct: 18 DEEQTEVANKPKLPIVYRKEYGVRFCGLQRLHPFDAAKGGNIFRLLKA---GHLIH---- 70
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
+ D + +P+E++ +LL HT++Y+ SLKWS NVA I+E+ PL+ VPNYFVQ+ YLRPMR
Sbjct: 71 SDDEVHQPKEITTAELLDVHTKRYIGSLKWSLNVAKIAEIPPLLFVPNYFVQRSYLRPMR 130
Query: 219 YHVGGTLEAGFLALR----RGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KS 273
+ G+L A AL W+IN+GGGFHH S +GGGFC YADI+L V++L S +
Sbjct: 131 FQTAGSLLAAKRALESTTGHQWAINLGGGFHHCSADRGGGFCPYADITLTVRMLLGSGRG 190
Query: 274 ISTAMIVDLDAHQGNGYEKDFMNET--RIFIMET------CITSKAKEAIRCRIELAPYT 325
I MIVDLDAHQGNGY +D + E +FIM+ +AK AI +EL P+T
Sbjct: 191 IERIMIVDLDAHQGNGYARDLLEERGRTVFIMDMYNYRIYPRDQEAKLAISRAVELKPHT 250
Query: 326 EDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKA 385
ED+ YL K+ GL RS+ F P+ ++YNAGTDVL DPLG+L I+PQG+I RDE+VF A
Sbjct: 251 EDEEYLRKLRDGLSRSMDQFRPNFVIYNAGTDVLKGDPLGVLDITPQGVIERDEIVFAMA 310
Query: 386 RERRVPIVMLTSGGYLKQTARIIADSILNLADLGLI 421
RER VP+VML SGGYL+ +AR+IADSILNL + GL+
Sbjct: 311 RERSVPLVMLLSGGYLRSSARVIADSILNLNEKGLL 346
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
Query: 17 WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQFSDY 71
W+IN+GGGFHH S +GGGFC YADI+L V++L S + I MIVDLDAHQ + Y
Sbjct: 152 WAINLGGGFHHCSADRGGGFCPYADITLTVRMLLGSGRGIERIMIVDLDAHQGNGY 207
>gi|390337555|ref|XP_783282.2| PREDICTED: histone deacetylase 11-like [Strongylocentrotus
purpuratus]
Length = 491
Score = 327 bits (839), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 161/323 (49%), Positives = 216/323 (66%), Gaps = 17/323 (5%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
WPI+Y P+YN+ F EKLHPFDS KW ++N L K E F + + P E +
Sbjct: 123 WPIIYSPDYNISFLGFEKLHPFDSGKWGKVYNLLKK-------EGMFCDETTVC-PLEAT 174
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
E+ LL+AHT++Y+ LKWS +VA I+E+ P+ +PNY VQK LRP+R GG++ A L
Sbjct: 175 EDDLLVAHTKQYISRLKWSISVAGITEIPPVALLPNYIVQKKVLRPLRLQTGGSILAAKL 234
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
A+ RGW+INIGGGFHH S +GGGFCAYADI+L ++ LF +I AMI+DLDAHQGNG+
Sbjct: 235 AMERGWAINIGGGFHHCSSKQGGGFCAYADITLALRFLFHQGTIKKAMILDLDAHQGNGH 294
Query: 291 EKDFMNETR-IFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
E+DFM + ++I++ AK I ++E+ + D+ Y+ + + LE +L
Sbjct: 295 ERDFMQDKESVYILDVYNRHIYPRDGFAKRGISRKVEVNYFIADEQYMTLVASNLEAALN 354
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER--RVPIVMLTSGGYL 401
F PDI+VYNAGTD L DPLG L+I+PQGII+RD +VF AR+R +PIVM+TSGGY
Sbjct: 355 EFVPDILVYNAGTDSLEGDPLGALSITPQGIIKRDMMVFEFARDRPKPIPIVMVTSGGYQ 414
Query: 402 KQTARIIADSILNLADLGLISRP 424
+ A IIA SILNL GLI+ P
Sbjct: 415 RNNADIIAASILNLWRRGLIACP 437
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 50/64 (78%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ A LA+ RGW+INIGGGFHH S +GGGFCAYADI+L ++ LF +I AMI+DL
Sbjct: 227 GSILAAKLAMERGWAINIGGGFHHCSSKQGGGFCAYADITLALRFLFHQGTIKKAMILDL 286
Query: 64 DAHQ 67
DAHQ
Sbjct: 287 DAHQ 290
>gi|332231747|ref|XP_003265056.1| PREDICTED: histone deacetylase 11 isoform 2 [Nomascus leucogenys]
Length = 343
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 164/319 (51%), Positives = 213/319 (66%), Gaps = 38/319 (11%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
WPIVY P YN+ F LEKLHPFD+ KW + N+L E K ++ + ++E +E S
Sbjct: 35 WPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLLSDNMLVEAREAS 86
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
EE LL+ HT +YL LK + LRP+R GGT+ AG L
Sbjct: 87 EEDLLVVHTRRYLNELK-----------------------RKVLRPLRTQTGGTIMAGKL 123
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNG 289
A+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+DLDAHQGNG
Sbjct: 124 AVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAHQGNG 183
Query: 290 YEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+E+DFM++ R++IM+ AK+AIR ++EL TED YL+K+E +++SL+
Sbjct: 184 HERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIKKSLQ 243
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD++VYNAGTD+L D LG L+ISP GI++RDELVF R RRVPI+M+TSGGY K+
Sbjct: 244 EHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVTSGGYQKR 303
Query: 404 TARIIADSILNLADLGLIS 422
TARIIADSILNL DLGLI
Sbjct: 304 TARIIADSILNLFDLGLIG 322
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 116 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 175
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 176 LDAHQ 180
>gi|157106851|ref|XP_001649512.1| histone deacetylase [Aedes aegypti]
gi|108879745|gb|EAT43970.1| AAEL004639-PA [Aedes aegypti]
Length = 358
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 164/316 (51%), Positives = 216/316 (68%), Gaps = 20/316 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQD-NIIEPQEVS 170
PIVYRPEY V F L++LHPFD+ K +I+ L K I+ D ++ P+E+S
Sbjct: 41 PIVYRPEYGVEFCGLQRLHPFDAAKGGNIYRLLKA--------GKLISSDSDVHRPREIS 92
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
++LL HT++Y++SLKWS NVA I+E+ PL+ VPNYFVQ+ YLRPMRY G++ A
Sbjct: 93 TDELLDVHTKRYIESLKWSINVAKIAEIPPLIFVPNYFVQRSYLRPMRYQTFGSILAARC 152
Query: 231 ALR----RGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAH 285
AL GW+IN+GGGFHH S GGGFC YADI+L+V++L S K I MIVDLDAH
Sbjct: 153 ALDGSCGTGWAINLGGGFHHCSADDGGGFCPYADITLIVRMLQSSGKGIERIMIVDLDAH 212
Query: 286 QGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLE 339
QGNGY +D M+++ +FIM+ +AK AI+ +EL P+ D+ YL K+ L
Sbjct: 213 QGNGYARDLMDDSGVFIMDMYNYRIYPRDHEAKLAIKRAVELKPHVGDEEYLRKLRTNLA 272
Query: 340 RSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGG 399
S F P+ ++YNAGTDVL DPLG+L I+ QG+I RDE+VF AR+R VP+VML SGG
Sbjct: 273 LSFDEFRPNFLIYNAGTDVLKGDPLGILDITGQGVIERDEIVFEMARDRGVPLVMLLSGG 332
Query: 400 YLKQTARIIADSILNL 415
YL+ +AR+IADSILNL
Sbjct: 333 YLRSSARVIADSILNL 348
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 43/57 (75%), Gaps = 1/57 (1%)
Query: 16 GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQFSDY 71
GW+IN+GGGFHH S GGGFC YADI+L+V++L S K I MIVDLDAHQ + Y
Sbjct: 161 GWAINLGGGFHHCSADDGGGFCPYADITLIVRMLQSSGKGIERIMIVDLDAHQGNGY 217
>gi|242096222|ref|XP_002438601.1| hypothetical protein SORBIDRAFT_10g022550 [Sorghum bicolor]
gi|241916824|gb|EER89968.1| hypothetical protein SORBIDRAFT_10g022550 [Sorghum bicolor]
Length = 350
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 161/342 (47%), Positives = 224/342 (65%), Gaps = 18/342 (5%)
Query: 86 EFLKERKALEDEITSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLW 145
E L++++ L ++ E V + P+VY P Y++ F LEKLHPFDS KW I YL
Sbjct: 14 EALRQKRILSSKLYLE----VPSSKAPVVYSPAYDISFLGLEKLHPFDSAKWGRICRYLT 69
Query: 146 KHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP 205
+ ++ + +++P E +E LL+ HTE YL SLK SF V+ I EV P+ VP
Sbjct: 70 RE--------GYLDKKRMVDPLEACKEDLLVVHTEAYLNSLKSSFRVSNIVEVPPVSLVP 121
Query: 206 NYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLV 265
N+ V K L P R VGG++ + LAL RGW+IN+GGGFHH S +GGGFCAYADISL +
Sbjct: 122 NWIVHKKLLYPFRKQVGGSILSAKLALERGWAINVGGGFHHCSADEGGGFCAYADISLCI 181
Query: 266 KLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITS------KAKEAIRCRI 319
+ F +IS+ +I+DLDAHQGNG+EKDF N+ R++I + AK+ I ++
Sbjct: 182 QFAFARLNISSVLIIDLDAHQGNGHEKDFANDGRVYIFDMYNAGIYPFDFTAKQYIDQKV 241
Query: 320 ELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDE 379
ELA TE YLE+++ LE F P +IVYNAGTD+L DPLG L +SP+G++ RDE
Sbjct: 242 ELASGTETDEYLEQLDKALEVCNSRFQPQLIVYNAGTDILDGDPLGRLKVSPEGVVTRDE 301
Query: 380 LVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLI 421
VF A+++ +P++MLTSGGY+K +AR+IADSI+NL++ LI
Sbjct: 302 KVFTFAKDQNIPLLMLTSGGYMKSSARVIADSIINLSNKNLI 343
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 50/64 (78%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ + LAL RGW+IN+GGGFHH S +GGGFCAYADISL ++ F +IS+ +I+DL
Sbjct: 139 GSILSAKLALERGWAINVGGGFHHCSADEGGGFCAYADISLCIQFAFARLNISSVLIIDL 198
Query: 64 DAHQ 67
DAHQ
Sbjct: 199 DAHQ 202
>gi|426339525|ref|XP_004033699.1| PREDICTED: histone deacetylase 11 isoform 2 [Gorilla gorilla
gorilla]
Length = 349
Score = 323 bits (828), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 165/331 (49%), Positives = 216/331 (65%), Gaps = 38/331 (11%)
Query: 99 TSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI 158
T++ + V WPIVY P YN+ F LEKLHPFD+ KW + N+L E K +
Sbjct: 29 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLL 80
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
+ ++E +E SEE LL+ HT +YL LK + LRP+R
Sbjct: 81 SDSMLVEAREASEEDLLVVHTRRYLNELK-----------------------RKVLRPLR 117
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTA 277
GGT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A
Sbjct: 118 TQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRA 177
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYL 331
I+DLDAHQGNG+E+DFM++ R++IM+ AK+AIR ++EL TED YL
Sbjct: 178 TIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYL 237
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
+K+E +++SL+ PD++VYNAGTD+L D LG L+ISP GI++RDELVF R RRVP
Sbjct: 238 DKVERNIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVP 297
Query: 392 IVMLTSGGYLKQTARIIADSILNLADLGLIS 422
I+M+TSGGY K+TARIIADSILNL LGLI
Sbjct: 298 ILMVTSGGYQKRTARIIADSILNLFGLGLIG 328
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 122 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 181
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 182 LDAHQ 186
>gi|195446307|ref|XP_002070720.1| GK10873 [Drosophila willistoni]
gi|194166805|gb|EDW81706.1| GK10873 [Drosophila willistoni]
Length = 342
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 166/335 (49%), Positives = 220/335 (65%), Gaps = 16/335 (4%)
Query: 96 DEITSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEA 155
DE+ +E V + PIVY +Y V F LEKLHPFD+ K KHI L +
Sbjct: 16 DEVVWLRREDVGSSKLPIVYSKKYAVRFAGLEKLHPFDAAKGKHIHKRLCAELL------ 69
Query: 156 KFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLR 215
+ + EP+EV++EQL HT KYL SL+ S NVA+I+EV L VPN +VQ CYLR
Sbjct: 70 --LGNGDFYEPKEVTKEQLRRIHTRKYLTSLECSMNVASIAEVPLLSFVPNTYVQSCYLR 127
Query: 216 PMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKS-- 273
PMR+ G++ AG LAL GWSIN+GGGFHH +KGGGFC YADIS+LV LF+ +
Sbjct: 128 PMRFQTAGSILAGKLALEYGWSINLGGGFHHCCTSKGGGFCPYADISMLVVRLFELEPFR 187
Query: 274 ISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITS------KAKEAIRCRIELAPYTED 327
+ MIVDLDAHQGNG+E+DF N ++I++ S +AK IRC +EL P TED
Sbjct: 188 VQRIMIVDLDAHQGNGHERDFHNVAAVYILDMYNASIYPKDHEAKTTIRCAVELRPRTED 247
Query: 328 QHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE 387
YL+K+ L+ ++ F P++++YNAGTD+L DPLG LAI+P G++ RD LVF R
Sbjct: 248 SFYLKKLAQCLKTAVAEFKPNVVIYNAGTDILDGDPLGNLAITPGGVMERDRLVFSTFRA 307
Query: 388 RRVPIVMLTSGGYLKQTARIIADSILNLADLGLIS 422
+PI+ML SGGY+K++A +IADSI+NL GL++
Sbjct: 308 LNIPIIMLLSGGYVKKSACVIADSIVNLRRKGLLN 342
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 49/66 (74%), Gaps = 2/66 (3%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKS--ISTAMIV 61
G++ AG LAL GWSIN+GGGFHH +KGGGFC YADIS+LV LF+ + + MIV
Sbjct: 135 GSILAGKLALEYGWSINLGGGFHHCCTSKGGGFCPYADISMLVVRLFELEPFRVQRIMIV 194
Query: 62 DLDAHQ 67
DLDAHQ
Sbjct: 195 DLDAHQ 200
>gi|297669995|ref|XP_002813165.1| PREDICTED: histone deacetylase 11 isoform 2 [Pongo abelii]
Length = 347
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 164/331 (49%), Positives = 216/331 (65%), Gaps = 38/331 (11%)
Query: 99 TSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI 158
T++ + V WPIVY P YN+ F LEKLHPFD+ KW + N+L E K +
Sbjct: 27 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLL 78
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
+ ++E +E SEE LL+ HT +YL LK + LRP+R
Sbjct: 79 SDSMLVEAREASEEDLLVVHTRRYLNELK-----------------------RKVLRPLR 115
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTA 277
GGT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L ++ LF+ + IS A
Sbjct: 116 TQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIQFLFERVEGISRA 175
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYL 331
I+DLDAHQGNG+E+DFM++ R++IM+ AK+AIR ++EL TED YL
Sbjct: 176 TIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYL 235
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
+K+E +++SL+ PD++VYNAGTD+L D LG L+ISP GI++RDELVF R RRVP
Sbjct: 236 DKVERNIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVP 295
Query: 392 IVMLTSGGYLKQTARIIADSILNLADLGLIS 422
I+M+TSGGY K+TARIIADSILNL LGLI
Sbjct: 296 ILMVTSGGYQKRTARIIADSILNLFGLGLIG 326
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L ++ LF+ + IS A I+D
Sbjct: 120 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIQFLFERVEGISRATIID 179
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 180 LDAHQ 184
>gi|312379378|gb|EFR25672.1| hypothetical protein AND_08794 [Anopheles darlingi]
Length = 354
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 160/320 (50%), Positives = 220/320 (68%), Gaps = 18/320 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNII-EPQEVS 170
PIVYR EY+V F L+KLHPFD+ K +I+ L I+ D+ + P EV+
Sbjct: 39 PIVYRREYSVRFCGLQKLHPFDAAKGTNIYRLLKA--------GGLISPDSTVYTPPEVT 90
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
++LL HT++Y++SLKWS NVA I+E+ PL+ VPN FVQ+ YLRPMRY GGTL A +
Sbjct: 91 LDELLDVHTKRYIESLKWSLNVAKIAEIPPLMFVPNCFVQRSYLRPMRYQTGGTLLAARI 150
Query: 231 ALRRG--WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKS-ISTAMIVDLDAHQG 287
AL+ G W+IN+GGGFHH S +GGGFC YADI+L V++L + I +I+DLDAHQG
Sbjct: 151 ALQSGLGWAINLGGGFHHCSADRGGGFCPYADITLTVRMLLAGGTGIERILIIDLDAHQG 210
Query: 288 NGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERS 341
NGY +D M + ++I++ +AK AI +EL P+T+D+ Y+ K++ LE+S
Sbjct: 211 NGYARDLMGDASVYILDMYNYQIYPRDHQAKLAIGRAVELKPHTDDEEYIGKLKRCLEQS 270
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYL 401
L F P+ I+YNAGTDVL DPLGLL I+P+G++ RDE+VF A +R +P+ ML SGGYL
Sbjct: 271 LAEFQPNFIIYNAGTDVLKGDPLGLLDITPEGVMERDEIVFRAALQRTIPLAMLMSGGYL 330
Query: 402 KQTARIIADSILNLADLGLI 421
+ +AR+IA+SILNL D L+
Sbjct: 331 RSSARVIANSILNLRDKALL 350
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 50/71 (70%), Gaps = 3/71 (4%)
Query: 4 GTLEAGFLALRRG--WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKS-ISTAMI 60
GTL A +AL+ G W+IN+GGGFHH S +GGGFC YADI+L V++L + I +I
Sbjct: 143 GTLLAARIALQSGLGWAINLGGGFHHCSADRGGGFCPYADITLTVRMLLAGGTGIERILI 202
Query: 61 VDLDAHQFSDY 71
+DLDAHQ + Y
Sbjct: 203 IDLDAHQGNGY 213
>gi|413954352|gb|AFW87001.1| histone deacetylase 11 [Zea mays]
Length = 351
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 157/342 (45%), Positives = 224/342 (65%), Gaps = 18/342 (5%)
Query: 86 EFLKERKALEDEITSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLW 145
E L++++ L ++ E V + P+VY P Y++ F LEKLHPF+S KW I YL
Sbjct: 15 EALRQKRILSSKLYLE----VPSSKAPVVYSPAYDISFLGLEKLHPFESAKWGRICRYLT 70
Query: 146 KHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP 205
+ ++ + ++EP E +E LL+ HTE YL SLK SF V++I EV P+ VP
Sbjct: 71 RE--------GYLDKKQMVEPLEACKEDLLVVHTEAYLNSLKCSFRVSSIVEVPPVSLVP 122
Query: 206 NYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLV 265
N+ V + L P R VGG++ + LA RGW+IN+GGGFHH S +GGGFCAYADISL +
Sbjct: 123 NWIVHRKLLHPFRKQVGGSILSAKLAFERGWAINVGGGFHHCSADEGGGFCAYADISLCI 182
Query: 266 KLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITS------KAKEAIRCRI 319
+ F +IS+ +I+DLDAHQGNG+EKDF N+ R++I++ AK+ I ++
Sbjct: 183 QFAFVRLNISSVLIIDLDAHQGNGHEKDFANDGRVYILDMYNAGIYPFDFTAKQYIDQKV 242
Query: 320 ELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDE 379
EL ++ YLE+++ LE F P +IVYNAGTD+L DPLG L +SP+G++ RDE
Sbjct: 243 ELVSGSKTDEYLEQLDKALEICNSRFEPQLIVYNAGTDILDGDPLGRLKVSPEGVVTRDE 302
Query: 380 LVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLI 421
VF A++R +P++MLTSGGY+K +AR+IADSI+NL++ LI
Sbjct: 303 KVFRFAKDRNIPLLMLTSGGYMKSSARVIADSIINLSNKNLI 344
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 49/64 (76%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ + LA RGW+IN+GGGFHH S +GGGFCAYADISL ++ F +IS+ +I+DL
Sbjct: 140 GSILSAKLAFERGWAINVGGGFHHCSADEGGGFCAYADISLCIQFAFVRLNISSVLIIDL 199
Query: 64 DAHQ 67
DAHQ
Sbjct: 200 DAHQ 203
>gi|426250036|ref|XP_004018746.1| PREDICTED: LOW QUALITY PROTEIN: histone deacetylase 11 [Ovis aries]
Length = 646
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 161/319 (50%), Positives = 213/319 (66%), Gaps = 22/319 (6%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
WPIVY P YN+ F LE+LHPFD+ KW + ++L E K ++ ++E
Sbjct: 258 WPIVYSPRYNITFLGLERLHPFDAGKWGKVISFL--------KEEKLLSDSTLVE----- 304
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R GGT+ AG L
Sbjct: 305 -AXLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIMAGKL 363
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF-QSKSISTAMIVDLDAHQGNG 289
A+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF + + IS A IVDLDAHQ
Sbjct: 364 AVDRGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFDRVEGISKATIVDLDAHQVTA 423
Query: 290 YE------KDFMNETRIFIMETCIT-SKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSL 342
+ K + + + + S EAIR ++EL TED YL+K+E LE++L
Sbjct: 424 EQRXSQMGKQAVPPAPVSRLHAGASLSPLPEAIRRKVELEWGTEDDEYLQKVERNLEKAL 483
Query: 343 RSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402
+ PD++VYNAGTD+L D LG LAISPQG+++RDELVF R R++PI+M+TSGGY K
Sbjct: 484 QEHRPDVVVYNAGTDILEGDRLGGLAISPQGVVKRDELVFRIVRGRQLPILMVTSGGYQK 543
Query: 403 QTARIIADSILNLADLGLI 421
+TARIIADSILNL LGLI
Sbjct: 544 RTARIIADSILNLYGLGLI 562
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 53/67 (79%), Gaps = 1/67 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF-QSKSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF + + IS A IVD
Sbjct: 356 GTIMAGKLAVDRGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFDRVEGISKATIVD 415
Query: 63 LDAHQFS 69
LDAHQ +
Sbjct: 416 LDAHQVT 422
>gi|326522206|dbj|BAK04231.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 352
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 155/316 (49%), Positives = 210/316 (66%), Gaps = 14/316 (4%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY Y++ F +EK+HPFDS KW I +L K + ++ ++EP E S+
Sbjct: 38 PVVYSTAYDIAFLGIEKMHPFDSSKWGRICRFLTKE--------GHLEKNRVVEPLEASQ 89
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E LL+ HTE YL SL+ SF VAAI EV PL +PN+ VQ+ L P R VGG++ + LA
Sbjct: 90 EDLLVVHTEAYLNSLRSSFRVAAIVEVPPLTLIPNWLVQQRLLYPFRKQVGGSILSAKLA 149
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L RGW+IN+GGGFHH S +GGGFCAYADISL ++ F +IS MI+DL AHQGNGYE
Sbjct: 150 LERGWAINVGGGFHHCSAEEGGGFCAYADISLCIQFAFVRLNISRVMIIDLGAHQGNGYE 209
Query: 292 KDFMNETRIFIMETCITS------KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
KDF N+ R++I++ AK I +IEL TE YL++++ L+ + F
Sbjct: 210 KDFANDGRVYILDMYNAGIYPFDYAAKRYIDQKIELVSGTETDDYLDQLDKALKVAQTRF 269
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
P +I+YNAGTD+L DPLG L ISP+G++ RDE VF A+++ +P+VM+TSGGY+K +A
Sbjct: 270 QPQLIIYNAGTDILDGDPLGNLKISPEGVVIRDEKVFKFAKDQNIPLVMMTSGGYMKSSA 329
Query: 406 RIIADSILNLADLGLI 421
R+IADSI NL+ LI
Sbjct: 330 RVIADSITNLSQKDLI 345
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 50/68 (73%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ + LAL RGW+IN+GGGFHH S +GGGFCAYADISL ++ F +IS MI+DL
Sbjct: 141 GSILSAKLALERGWAINVGGGFHHCSAEEGGGFCAYADISLCIQFAFVRLNISRVMIIDL 200
Query: 64 DAHQFSDY 71
AHQ + Y
Sbjct: 201 GAHQGNGY 208
>gi|195622418|gb|ACG33039.1| histone deacetylase 11 [Zea mays]
Length = 352
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 156/342 (45%), Positives = 223/342 (65%), Gaps = 18/342 (5%)
Query: 86 EFLKERKALEDEITSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLW 145
E L++++ L ++ E V + P+VY P Y++ F LEKLHPF+S KW I YL
Sbjct: 16 EALRQKRILSSKLYLE----VPSSKAPVVYSPAYDISFLGLEKLHPFESAKWGRICRYLT 71
Query: 146 KHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP 205
+ ++ + ++EP E +E LL+ HTE YL SLK SF V++I EV P+ VP
Sbjct: 72 RE--------GYLDKKRMVEPLEACKEDLLVVHTEAYLNSLKCSFRVSSIVEVPPVSLVP 123
Query: 206 NYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLV 265
N+ V + L P R VGG++ + LA RGW+IN+GGGFHH S +GGGFCAYADISL +
Sbjct: 124 NWIVHRKLLHPFRKQVGGSILSAKLAFERGWAINVGGGFHHCSADEGGGFCAYADISLCI 183
Query: 266 KLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITS------KAKEAIRCRI 319
F +IS+ +I+DLDAHQGNG+EKDF N+ R++I++ AK+ I ++
Sbjct: 184 HFAFVRLNISSVLIIDLDAHQGNGHEKDFANDGRVYILDMYNAGIYPFDFTAKQYIDQKV 243
Query: 320 ELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDE 379
EL ++ YLE+++ LE F P +IVYNAGTD+L DPLG L +SP+G++ RD+
Sbjct: 244 ELVSGSKTDEYLEQLDKALEICNSRFEPQLIVYNAGTDILDGDPLGRLKVSPEGVVTRDD 303
Query: 380 LVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLI 421
VF A++R +P++MLTSGGY+K +AR+IADSI+NL++ LI
Sbjct: 304 KVFRFAKDRNIPLLMLTSGGYMKSSARVIADSIINLSNKNLI 345
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 48/64 (75%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ + LA RGW+IN+GGGFHH S +GGGFCAYADISL + F +IS+ +I+DL
Sbjct: 141 GSILSAKLAFERGWAINVGGGFHHCSADEGGGFCAYADISLCIHFAFVRLNISSVLIIDL 200
Query: 64 DAHQ 67
DAHQ
Sbjct: 201 DAHQ 204
>gi|222635776|gb|EEE65908.1| hypothetical protein OsJ_21754 [Oryza sativa Japonica Group]
Length = 421
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 151/319 (47%), Positives = 214/319 (67%), Gaps = 14/319 (4%)
Query: 109 RPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQE 168
R P+VY P Y++ F +EKLHPFDS KW I +L K + ++ ++EP E
Sbjct: 104 RSAPVVYSPAYDIAFLGIEKLHPFDSSKWGRICKFLTKE--------GHLEKNRVVEPLE 155
Query: 169 VSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAG 228
+++ LL+ H+E YL SLK S VA+I E+ P+ +PN+ VQ+ L P R VGG++ +
Sbjct: 156 ATKDDLLVVHSESYLNSLKSSLKVASIVELPPVAFIPNWLVQQKLLYPFRKQVGGSILSA 215
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
LAL RGW+IN+GGGFHH S +GGGFCAYADISL ++ F +IS MI+DLDAHQGN
Sbjct: 216 KLALERGWAINVGGGFHHCSAEQGGGFCAYADISLCIQFAFVRLNISRVMIIDLDAHQGN 275
Query: 289 GYEKDFMNETRIFIMETCITS------KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSL 342
G+EKDF N+ R++ ++ AK I ++EL T+ + YL++++ L+ +
Sbjct: 276 GHEKDFANDGRVYTLDMYNAGIYPYDHVAKRYIDQKVELVSGTKTEDYLDQLDKALKVAE 335
Query: 343 RSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402
F P +IVYNAGTD+L DPLG L ISPQG++ RDE VF A+++ +P++MLTSGGY+K
Sbjct: 336 SRFQPQLIVYNAGTDILDGDPLGRLKISPQGVVIRDEKVFRFAKDQSIPLLMLTSGGYMK 395
Query: 403 QTARIIADSILNLADLGLI 421
+AR+IADSI+NL++ LI
Sbjct: 396 SSARVIADSIINLSNKNLI 414
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 49/64 (76%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ + LAL RGW+IN+GGGFHH S +GGGFCAYADISL ++ F +IS MI+DL
Sbjct: 210 GSILSAKLALERGWAINVGGGFHHCSAEQGGGFCAYADISLCIQFAFVRLNISRVMIIDL 269
Query: 64 DAHQ 67
DAHQ
Sbjct: 270 DAHQ 273
>gi|195039143|ref|XP_001990869.1| GH18019 [Drosophila grimshawi]
gi|193895065|gb|EDV93931.1| GH18019 [Drosophila grimshawi]
Length = 325
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 160/321 (49%), Positives = 209/321 (65%), Gaps = 16/321 (4%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY Y+V F LEKLHPFD+ K KHI L + + +P E+++
Sbjct: 13 PIVYSKNYSVRFAGLEKLHPFDAAKGKHIQELLCDELS--------LNAGQFYDPVEITK 64
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
EQL HT KYLKSLKWS VA I+EV ++ +PN+ VQ YLRPMRY G++ AG LA
Sbjct: 65 EQLRRVHTRKYLKSLKWSAKVACIAEVPVMIFMPNFTVQSGYLRPMRYQASGSILAGKLA 124
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF--QSKSISTAMIVDLDAHQGNG 289
L GW+IN+GGGFHH KGGGFC YADI+LL+ LF + + AMIVDLDAHQGNG
Sbjct: 125 LEYGWAINLGGGFHHCCSNKGGGFCPYADITLLLVRLFDLEPTRVRNAMIVDLDAHQGNG 184
Query: 290 YEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+E+DFMN ++I++ + +AK +IRC +EL TED +YL ++ L ++L
Sbjct: 185 HERDFMNTDSVYILDMYNAFVYPMDHEAKLSIRCGVELKHLTEDAYYLRQLSRCLLQALT 244
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
F PDI++YNAGTDVL DPLG LA++ +G+I RD LVF R +P+VML SGGY+K
Sbjct: 245 EFKPDIVIYNAGTDVLKGDPLGNLALTAEGVIERDRLVFSTFRSLNIPVVMLLSGGYMKC 304
Query: 404 TARIIADSILNLADLGLISRP 424
+ R+IADSI+NL G + P
Sbjct: 305 SKRVIADSIVNLQRQGWLCVP 325
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF--QSKSISTAMIV 61
G++ AG LAL GW+IN+GGGFHH KGGGFC YADI+LL+ LF + + AMIV
Sbjct: 116 GSILAGKLALEYGWAINLGGGFHHCCSNKGGGFCPYADITLLLVRLFDLEPTRVRNAMIV 175
Query: 62 DLDAHQ 67
DLDAHQ
Sbjct: 176 DLDAHQ 181
>gi|444717454|gb|ELW58284.1| Histone deacetylase 11 [Tupaia chinensis]
Length = 372
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 165/357 (46%), Positives = 216/357 (60%), Gaps = 68/357 (19%)
Query: 126 LEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKS 185
LEKLHPFD+ KW + N+L E K ++ ++E +E SEE LL+ HT +YL
Sbjct: 3 LEKLHPFDAGKWGKVINFL--------KEDKLLSDSTLVEAREASEEDLLVVHTRRYLNE 54
Query: 186 LK-----------------------------------------------------WSFNV 192
LK WSF V
Sbjct: 55 LKPRPVHVQSPVQHVSHCTCAPMGWPASLPGCESWGEDEQGLGNPAGISYLFTKQWSFAV 114
Query: 193 AAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKG 252
A I+E+ P++ +PN+ VQ+ LRP+R GGT+ G LA+ RGW+IN+GGGFHH S +G
Sbjct: 115 ATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIMVGKLAVERGWAINVGGGFHHCSSDRG 174
Query: 253 GGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET------ 305
GGFCAYADI+L +K LF+ + IS A I+DLDAHQGNG+E+DFM + R++IM+
Sbjct: 175 GGFCAYADITLAIKFLFERVEGISRATIIDLDAHQGNGHERDFMGDKRVYIMDVYNRHIY 234
Query: 306 CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLG 365
AK+AIR ++EL ED YL+K+E +E++L+ PD++VYNAGTDVL D LG
Sbjct: 235 PGDRFAKQAIRRKVELEWGVEDDEYLDKVERNMEKALQEHPPDVVVYNAGTDVLEGDRLG 294
Query: 366 LLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLIS 422
L+ISP GI+RRDELVF R R+VPI+M+TSGGY K+TARIIADSILNL LGLI
Sbjct: 295 GLSISPGGIVRRDELVFRVVRGRQVPILMVTSGGYQKRTARIIADSILNLHSLGLIG 351
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ G LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 145 GTIMVGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 204
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 205 LDAHQ 209
>gi|115468630|ref|NP_001057914.1| Os06g0571100 [Oryza sativa Japonica Group]
gi|54291235|dbj|BAD61930.1| putative HDA2 [Oryza sativa Japonica Group]
gi|113595954|dbj|BAF19828.1| Os06g0571100 [Oryza sativa Japonica Group]
gi|125555796|gb|EAZ01402.1| hypothetical protein OsI_23434 [Oryza sativa Indica Group]
gi|215704748|dbj|BAG94776.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 352
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 150/316 (47%), Positives = 213/316 (67%), Gaps = 14/316 (4%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y++ F +EKLHPFDS KW I +L K + ++ ++EP E ++
Sbjct: 38 PVVYSPAYDIAFLGIEKLHPFDSSKWGRICKFLTKE--------GHLEKNRVVEPLEATK 89
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ LL+ H+E YL SLK S VA+I E+ P+ +PN+ VQ+ L P R VGG++ + LA
Sbjct: 90 DDLLVVHSESYLNSLKSSLKVASIVELPPVAFIPNWLVQQKLLYPFRKQVGGSILSAKLA 149
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L RGW+IN+GGGFHH S +GGGFCAYADISL ++ F +IS MI+DLDAHQGNG+E
Sbjct: 150 LERGWAINVGGGFHHCSAEQGGGFCAYADISLCIQFAFVRLNISRVMIIDLDAHQGNGHE 209
Query: 292 KDFMNETRIFIMETCITS------KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
KDF N+ R++ ++ AK I ++EL T+ + YL++++ L+ + F
Sbjct: 210 KDFANDGRVYTLDMYNAGIYPYDHVAKRYIDQKVELVSGTKTEDYLDQLDKALKVAESRF 269
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
P +IVYNAGTD+L DPLG L ISPQG++ RDE VF A+++ +P++MLTSGGY+K +A
Sbjct: 270 QPQLIVYNAGTDILDGDPLGRLKISPQGVVIRDEKVFRFAKDQSIPLLMLTSGGYMKSSA 329
Query: 406 RIIADSILNLADLGLI 421
R+IADSI+NL++ LI
Sbjct: 330 RVIADSIINLSNKNLI 345
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 49/64 (76%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ + LAL RGW+IN+GGGFHH S +GGGFCAYADISL ++ F +IS MI+DL
Sbjct: 141 GSILSAKLALERGWAINVGGGFHHCSAEQGGGFCAYADISLCIQFAFVRLNISRVMIIDL 200
Query: 64 DAHQ 67
DAHQ
Sbjct: 201 DAHQ 204
>gi|357124055|ref|XP_003563722.1| PREDICTED: histone deacetylase 2-like [Brachypodium distachyon]
Length = 352
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 152/316 (48%), Positives = 210/316 (66%), Gaps = 14/316 (4%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y Y++ F +EKLHPFDS KW I +L K + ++ ++EP E S+
Sbjct: 38 PVIYSVAYDIAFLGIEKLHPFDSAKWGRICKFLTKE--------GHLEKNRVVEPLEASK 89
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E LL+ HT+ YL SLK SF VA I EV P+ +PN+ VQ+ L P R VGG++ + LA
Sbjct: 90 EDLLVVHTQSYLNSLKTSFRVATIMEVPPVSLIPNWLVQQKLLFPFRKQVGGSILSAKLA 149
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L RGW+IN+GGGFHH S +GGGFCAYADISL ++ F +IS MI+DLDAHQGNG+E
Sbjct: 150 LERGWAINVGGGFHHCSAEEGGGFCAYADISLCIQFAFDRLNISRVMIIDLDAHQGNGHE 209
Query: 292 KDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
KDF ++ R++I++ AK I ++EL T+ YL++++ LE + F
Sbjct: 210 KDFADDGRVYILDMYNAGIYPFDHAAKRYIDQKVELVSGTKTDDYLDQLDQALEVAQTRF 269
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
P +IVYNAGTD+L DPLG L ISP+G++ RDE VF A ++ +P++MLTSGGY+K +A
Sbjct: 270 QPQLIVYNAGTDILDGDPLGRLEISPEGVVNRDEKVFRFAVDQNIPLLMLTSGGYMKSSA 329
Query: 406 RIIADSILNLADLGLI 421
R+IADSI+NL+ LI
Sbjct: 330 RVIADSIINLSQKELI 345
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 49/64 (76%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ + LAL RGW+IN+GGGFHH S +GGGFCAYADISL ++ F +IS MI+DL
Sbjct: 141 GSILSAKLALERGWAINVGGGFHHCSAEEGGGFCAYADISLCIQFAFDRLNISRVMIIDL 200
Query: 64 DAHQ 67
DAHQ
Sbjct: 201 DAHQ 204
>gi|195107762|ref|XP_001998477.1| GI23615 [Drosophila mojavensis]
gi|193915071|gb|EDW13938.1| GI23615 [Drosophila mojavensis]
Length = 323
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 162/316 (51%), Positives = 207/316 (65%), Gaps = 16/316 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY +Y V F LEKLHPFD+ K KHI L + + + P E+++
Sbjct: 13 PIVYSKKYAVRFGGLEKLHPFDAAKGKHIQQLLCAELS--------LECGDFYNPLEITK 64
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E+LL HT KYL+SLKWS VA I+EV L+ VPN VQ YLRPMRY G++ AG LA
Sbjct: 65 EELLRVHTPKYLRSLKWSAKVATIAEVPVLIFVPNVGVQSGYLRPMRYQTAGSILAGKLA 124
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF--QSKSISTAMIVDLDAHQGNG 289
L GW+IN+GGGFHH +KGGGFC YADI+LL+ LF + + AMIVDLDAHQGNG
Sbjct: 125 LEYGWAINLGGGFHHCCSSKGGGFCPYADITLLLVRLFDLEPLRVRNAMIVDLDAHQGNG 184
Query: 290 YEKDFMNETRIFIMETCIT------SKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+E+DF + ++I++ ++AK +IRC +EL TED HYL+++ L R+L
Sbjct: 185 HERDFKDTETVYILDMYNAYIYPKDNEAKLSIRCAVELKHLTEDAHYLKQLNRCLMRALA 244
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
F PDI+VYNAGTD+L DPLG LAI+P G+I RD LVF R +PIVML SGGY+K
Sbjct: 245 EFKPDIVVYNAGTDILKGDPLGNLAITPDGVIERDRLVFSTFRALNIPIVMLLSGGYMKS 304
Query: 404 TARIIADSILNLADLG 419
+ +IADSI+NL G
Sbjct: 305 SKNVIADSIVNLKRQG 320
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 49/66 (74%), Gaps = 2/66 (3%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF--QSKSISTAMIV 61
G++ AG LAL GW+IN+GGGFHH +KGGGFC YADI+LL+ LF + + AMIV
Sbjct: 116 GSILAGKLALEYGWAINLGGGFHHCCSSKGGGFCPYADITLLLVRLFDLEPLRVRNAMIV 175
Query: 62 DLDAHQ 67
DLDAHQ
Sbjct: 176 DLDAHQ 181
>gi|196005073|ref|XP_002112403.1| hypothetical protein TRIADDRAFT_25844 [Trichoplax adhaerens]
gi|190584444|gb|EDV24513.1| hypothetical protein TRIADDRAFT_25844, partial [Trichoplax
adhaerens]
Length = 374
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 160/326 (49%), Positives = 203/326 (62%), Gaps = 15/326 (4%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
WPIVY Y++ FF +EKLHPFDS KW + L K I D+I+ P E +
Sbjct: 12 WPIVYSDRYDISFFGVEKLHPFDSCKWGKVMAIL--------KSMKLIGDDDIVIPNEAT 63
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
E LL+ H YLKSLKWS VA I EV + +PN+ VQK L+ RY GGT+ AG L
Sbjct: 64 ENDLLVVHPSSYLKSLKWSITVANIIEVPFVALLPNFVVQKRILKAFRYQTGGTVLAGKL 123
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNG 289
AL RGW+INIGGGFHH S GGGFCAYADI++ +K+LFQ + A+I+DLDAHQGNG
Sbjct: 124 ALERGWAINIGGGFHHCSSDNGGGFCAYADITICLKMLFQHVDGVRKAVIIDLDAHQGNG 183
Query: 290 YEKDFMNETRIFIMETCITS------KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+E+DF + ++I++ A+ I I++ +D YL I+ L
Sbjct: 184 HERDFAYNSNVYILDLYNADIYPRDKDARRGISKEIKIRTGEKDDRYLMLIKLNYPTILD 243
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
F PDI++YNAGTD+L DPLG L IS QG+I+RDE+VF + R R +PIVMLTSGGY K
Sbjct: 244 EFKPDIVIYNAGTDILDGDPLGGLCISAQGVIKRDEIVFKETRFRNIPIVMLTSGGYQKS 303
Query: 404 TARIIADSILNLADLGLISRPYNIWF 429
A+IIADSI+NL LI Y F
Sbjct: 304 NAKIIADSIMNLYQKKLIGNEYTATF 329
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LAL RGW+INIGGGFHH S GGGFCAYADI++ +K+LFQ + A+I+D
Sbjct: 116 GTVLAGKLALERGWAINIGGGFHHCSSDNGGGFCAYADITICLKMLFQHVDGVRKAVIID 175
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 176 LDAHQ 180
>gi|168019285|ref|XP_001762175.1| class III RPD3 type histone deacetylase protein [Physcomitrella
patens subsp. patens]
gi|162686579|gb|EDQ72967.1| class III RPD3 type histone deacetylase protein [Physcomitrella
patens subsp. patens]
Length = 322
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 152/319 (47%), Positives = 210/319 (65%), Gaps = 14/319 (4%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY YNV F +EKLHPFD+ KW H+ N+L + + Q I+EP E +
Sbjct: 4 PVVYSSSYNVSFLGIEKLHPFDASKWSHVQNFL--------SDDGVLKQKRIVEPVEATR 55
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ LL+ HTEKYL SL S+ VA I+EV P+ +PN+ VQ L P R VGGT+ + LA
Sbjct: 56 DDLLVVHTEKYLDSLNSSYVVAQITEVAPVAFLPNFLVQWKLLHPFRKQVGGTVLSAKLA 115
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
RGW+INIGGGFHH +GGGFCAYADI+L ++ + +IS +I+DLDAHQGNG+E
Sbjct: 116 KERGWAINIGGGFHHCCANEGGGFCAYADITLAIQFAYTRLAISRVIIIDLDAHQGNGHE 175
Query: 292 KDFMNETRIFIMETCITS------KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
+DF N+ R++I++ KA++ I + L T+ YL + L+++ F
Sbjct: 176 RDFTNDDRVYIIDMYNEDIYPQDFKARKRINQAVALKSGTKTDRYLALLSQELKKAATIF 235
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
P+++VYNAGTDVL DPLG L +SP+G+ +RDE+VF A++++ PI+MLTSGGY+K +A
Sbjct: 236 KPELVVYNAGTDVLEGDPLGRLLVSPEGVKQRDEMVFRFAKDQKSPIIMLTSGGYMKTSA 295
Query: 406 RIIADSILNLADLGLISRP 424
R+IADSI NLA LIS P
Sbjct: 296 RVIADSIKNLAAKRLISLP 314
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 47/64 (73%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ + LA RGW+INIGGGFHH +GGGFCAYADI+L ++ + +IS +I+DL
Sbjct: 107 GTVLSAKLAKERGWAINIGGGFHHCCANEGGGFCAYADITLAIQFAYTRLAISRVIIIDL 166
Query: 64 DAHQ 67
DAHQ
Sbjct: 167 DAHQ 170
>gi|66772327|gb|AAY55475.1| IP10969p [Drosophila melanogaster]
Length = 328
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 162/325 (49%), Positives = 211/325 (64%), Gaps = 16/325 (4%)
Query: 106 VVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIE 165
VV R PIV+ Y V F LE+LHPFD+ K KHI L + + + E
Sbjct: 12 VVGRKLPIVFSRNYAVRFGGLERLHPFDAAKGKHIHKLLCAQLQ--------LDDGSFYE 63
Query: 166 PQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTL 225
P E++++QL HT +YLKSL+WS NVA I+EV + VPN ++Q+ YLRPMR+ G++
Sbjct: 64 PTELTKDQLRRIHTREYLKSLRWSMNVACIAEVPLMAFVPNRYIQRSYLRPMRFQAAGSI 123
Query: 226 EAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSK--SISTAMIVDLD 283
AG LAL GW+IN+GGGFHH +GGGFC YADISLL+ LF+ + + MIVDLD
Sbjct: 124 LAGKLALDYGWAINLGGGFHHCCSYRGGGFCPYADISLLIVRLFEQEPFRVRRIMIVDLD 183
Query: 284 AHQGNGYEKDFMNETRIFIMETCIT------SKAKEAIRCRIELAPYTEDQHYLEKIEAG 337
AHQGNG+E+DF N ++I + AKE+IRC +EL YTED YL +++
Sbjct: 184 AHQGNGHERDFNNVAAVYIFDMYNAFVYPRDHVAKESIRCAVELRNYTEDGFYLRQLKRC 243
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L +SL F PD++VYNAGTDVL DPLG LAIS +G+I RD LVF R +P+VML S
Sbjct: 244 LMQSLAEFRPDMVVYNAGTDVLEGDPLGNLAISAEGVIERDRLVFSTFRALGIPVVMLLS 303
Query: 398 GGYLKQTARIIADSILNLADLGLIS 422
GGYLK +A +I DSI+NL GL++
Sbjct: 304 GGYLKASAGVITDSIVNLRLQGLLN 328
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSK--SISTAMIV 61
G++ AG LAL GW+IN+GGGFHH +GGGFC YADISLL+ LF+ + + MIV
Sbjct: 121 GSILAGKLALDYGWAINLGGGFHHCCSYRGGGFCPYADISLLIVRLFEQEPFRVRRIMIV 180
Query: 62 DLDAHQ 67
DLDAHQ
Sbjct: 181 DLDAHQ 186
>gi|168036173|ref|XP_001770582.1| class III RPD3 type histone deacetylase protein [Physcomitrella
patens subsp. patens]
gi|162678103|gb|EDQ64565.1| class III RPD3 type histone deacetylase protein [Physcomitrella
patens subsp. patens]
Length = 357
Score = 310 bits (795), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 149/319 (46%), Positives = 211/319 (66%), Gaps = 14/319 (4%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY P YN+ F +EKLHPFDS KW + +L + + + I+EP E +
Sbjct: 34 PIVYSPSYNISFLGMEKLHPFDSSKWGRVQKFL--------ADEGVLNRKRIVEPVEATR 85
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ LL+ H+E+YL SLK S VA I+EV P+ +PN+ VQ L+P R VGGT+ + LA
Sbjct: 86 DDLLVVHSEEYLDSLKCSSVVAQIAEVPPIALLPNFVVQWKVLKPFRKQVGGTVLSAKLA 145
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
RGW+INIGGGFHH T+GGGFCA+ADISL ++ + I+ MI+DLDAHQGNG+E
Sbjct: 146 KERGWAINIGGGFHHCCATEGGGFCAHADISLAIQFAYTRLGITRVMIIDLDAHQGNGHE 205
Query: 292 KDFMNETRIFIMETCITS------KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
+DFMN+ R++I++ + +AK + + L T+ YLE + L+++ F
Sbjct: 206 RDFMNDDRVYIVDLYNSDIYPWDHEAKRRMNQSVTLKSGTKTDQYLELLSQALKKAEAIF 265
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
P+++VYNAG+D+L DPLG L ++P+G+ +RDE+VF A+++ PI+MLTSGGY+K +A
Sbjct: 266 KPELVVYNAGSDILEGDPLGRLLVTPEGVKQRDEIVFQFAKDQHAPILMLTSGGYMKTSA 325
Query: 406 RIIADSILNLADLGLISRP 424
R+IADSI NL GLIS P
Sbjct: 326 RVIADSITNLGAKGLISLP 344
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 47/64 (73%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ + LA RGW+INIGGGFHH T+GGGFCA+ADISL ++ + I+ MI+DL
Sbjct: 137 GTVLSAKLAKERGWAINIGGGFHHCCATEGGGFCAHADISLAIQFAYTRLGITRVMIIDL 196
Query: 64 DAHQ 67
DAHQ
Sbjct: 197 DAHQ 200
>gi|21105771|gb|AAM34784.1|AF510671_1 HDA2 [Arabidopsis thaliana]
Length = 340
Score = 310 bits (795), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 155/319 (48%), Positives = 207/319 (64%), Gaps = 15/319 (4%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
I+Y Y++ F +EKLHPFDS KW + +L V F+ + I+EP E S+
Sbjct: 29 IIYSSSYDISFMGIEKLHPFDSSKWGRVCKFL--------VSDGFLEEKAIVEPLEASKI 80
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
LL+ H+E YL SLK S VA I+EV P+ PN+ VQ+ L P R VGGT+ A LA
Sbjct: 81 DLLVVHSENYLNSLKSSATVARITEVAPVAFFPNFLVQQKVLYPFRKQVGGTILAAKLAT 140
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
RGW+INIGGGFHH + +GGGFCA+ADISL + F IS MI+DLDAHQGNG+E
Sbjct: 141 ERGWAINIGGGFHHCTAERGGGFCAFADISLCIHFAFLRLRISRVMIIDLDAHQGNGHET 200
Query: 293 DFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
D ++ R++I++ +A+ I ++E+ T YL K++ LE + R+F
Sbjct: 201 DLGDDNRVYILDMYNPEIYPFDYRARRFIDQKVEVMSGTTTDEYLRKLDEALEVASRNFQ 260
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
P++++YNAGTD+L DPLGLL ISP GI RDE VF ARE+ +P+VMLTSGGY+K +AR
Sbjct: 261 PELVIYNAGTDILDGDPLGLLKISPDGITSRDEKVFRFAREKNIPLVMLTSGGYMKSSAR 320
Query: 407 IIADSILNLADLGLI-SRP 424
+IADSI NL+ GLI +RP
Sbjct: 321 VIADSIENLSRQGLIQTRP 339
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 46/64 (71%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LA RGW+INIGGGFHH + +GGGFCA+ADISL + F IS MI+DL
Sbjct: 131 GTILAAKLATERGWAINIGGGFHHCTAERGGGFCAFADISLCIHFAFLRLRISRVMIIDL 190
Query: 64 DAHQ 67
DAHQ
Sbjct: 191 DAHQ 194
>gi|30690103|ref|NP_568480.2| histone deacetylase 2 [Arabidopsis thaliana]
gi|145558941|sp|Q944K3.2|HDA2_ARATH RecName: Full=Histone deacetylase 2
gi|332006134|gb|AED93517.1| histone deacetylase 2 [Arabidopsis thaliana]
Length = 387
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 155/319 (48%), Positives = 207/319 (64%), Gaps = 15/319 (4%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
I+Y Y++ F +EKLHPFDS KW + +L V F+ + I+EP E S+
Sbjct: 76 IIYSSSYDISFMGIEKLHPFDSSKWGRVCKFL--------VSDGFLEEKAIVEPLEASKI 127
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
LL+ H+E YL SLK S VA I+EV P+ PN+ VQ+ L P R VGGT+ A LA
Sbjct: 128 DLLVVHSENYLNSLKSSATVARITEVAPVAFFPNFLVQQKVLYPFRKQVGGTILAAKLAT 187
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
RGW+INIGGGFHH + +GGGFCA+ADISL + F IS MI+DLDAHQGNG+E
Sbjct: 188 ERGWAINIGGGFHHCTAERGGGFCAFADISLCIHFAFLRLRISRVMIIDLDAHQGNGHET 247
Query: 293 DFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
D ++ R++I++ +A+ I ++E+ T YL K++ LE + R+F
Sbjct: 248 DLGDDNRVYILDMYNPEIYPFDYRARRFIDQKVEVMSGTTTDEYLRKLDEALEVASRNFQ 307
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
P++++YNAGTD+L DPLGLL ISP GI RDE VF ARE+ +P+VMLTSGGY+K +AR
Sbjct: 308 PELVIYNAGTDILDGDPLGLLKISPDGITSRDEKVFRFAREKNIPLVMLTSGGYMKSSAR 367
Query: 407 IIADSILNLADLGLI-SRP 424
+IADSI NL+ GLI +RP
Sbjct: 368 VIADSIENLSRQGLIQTRP 386
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 46/64 (71%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LA RGW+INIGGGFHH + +GGGFCA+ADISL + F IS MI+DL
Sbjct: 178 GTILAAKLATERGWAINIGGGFHHCTAERGGGFCAFADISLCIHFAFLRLRISRVMIIDL 237
Query: 64 DAHQ 67
DAHQ
Sbjct: 238 DAHQ 241
>gi|225429480|ref|XP_002277742.1| PREDICTED: histone deacetylase 2 [Vitis vinifera]
gi|296081627|emb|CBI20632.3| unnamed protein product [Vitis vinifera]
Length = 359
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 155/316 (49%), Positives = 211/316 (66%), Gaps = 14/316 (4%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PI+Y Y++ F +EKLHPFDS KW I +L I + +E +++I+EP E S+
Sbjct: 43 PIIYSSSYDIAFLGMEKLHPFDSSKWGRICRFL---ILDGALE-----KNHIVEPLEASK 94
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ LL+ H+E YL SLK S NVA I EV P+ +PN VQ+ L P R VGGT+ A LA
Sbjct: 95 DDLLVVHSESYLNSLKTSLNVAVIIEVPPVALLPNCLVQQKVLYPFRKQVGGTILAAKLA 154
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
RGW+IN+GGGFHH S KGGGFCAYADISL + F +IS MI+DLDAHQGNG+E
Sbjct: 155 KERGWAINVGGGFHHCSAGKGGGFCAYADISLCIHYAFIRLNISRVMIIDLDAHQGNGHE 214
Query: 292 KDFMNETRIFIMETCITS------KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
DF N+ R++I++ +A+ I ++E+ T YL K++ L+ + R F
Sbjct: 215 LDFSNDRRVYILDMYNPGIYPSDFEARRYIDQKVEVVSGTTTNEYLTKLDEALKVAGRMF 274
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
P+++VYNAGTD+L DPLG L ISP+G+ RDE VF ARE+++P++MLTSGGY+K +A
Sbjct: 275 DPELVVYNAGTDILDGDPLGRLKISPEGVTSRDEKVFRFAREKKIPLIMLTSGGYMKSSA 334
Query: 406 RIIADSILNLADLGLI 421
++IADSI+NL+ LI
Sbjct: 335 KVIADSIVNLSRKCLI 350
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 47/64 (73%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LA RGW+IN+GGGFHH S KGGGFCAYADISL + F +IS MI+DL
Sbjct: 146 GTILAAKLAKERGWAINVGGGFHHCSAGKGGGFCAYADISLCIHYAFIRLNISRVMIIDL 205
Query: 64 DAHQ 67
DAHQ
Sbjct: 206 DAHQ 209
>gi|388493714|gb|AFK34923.1| unknown [Lotus japonicus]
Length = 348
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/316 (49%), Positives = 205/316 (64%), Gaps = 14/316 (4%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y Y++ F +EKLHPFDS KW I +L V + + I+EP E S+
Sbjct: 33 PLIYSESYDISFLGIEKLHPFDSSKWGRICGFL--------VSFDVLDKKCIVEPLEASK 84
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ LL+ H+E YL SLK S NVA I EV P+ PN VQ L P R VGGT+ A LA
Sbjct: 85 DDLLVVHSESYLNSLKESSNVATIIEVPPVALFPNCLVQNKVLFPFRKQVGGTILAVKLA 144
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
RGW+IN+GGGFHH S KGGGFCAYADISL + F +IS MI+DLDAHQGNG+E
Sbjct: 145 KERGWAINVGGGFHHCSAEKGGGFCAYADISLCIHFAFVRLNISRVMIIDLDAHQGNGHE 204
Query: 292 KDFMNETRIFIMETCITS------KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
DF +++R++I++ A+ I ++E+ T + YL+K++ LE + R F
Sbjct: 205 TDFADDSRVYILDMYNPGIYPWDYDARNYINQKVEVKSGTLTEEYLQKLDEALEVAARRF 264
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
P++++YNAGTD+L DPLG L ISP GI RDE VF ARE+ +PIVMLTSGGY+K +A
Sbjct: 265 KPELVIYNAGTDILDGDPLGRLKISPDGIALRDEKVFRFAREKNIPIVMLTSGGYMKSSA 324
Query: 406 RIIADSILNLADLGLI 421
R+IADSI+NL+ LI
Sbjct: 325 RVIADSIVNLSKKCLI 340
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 47/64 (73%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LA RGW+IN+GGGFHH S KGGGFCAYADISL + F +IS MI+DL
Sbjct: 136 GTILAVKLAKERGWAINVGGGFHHCSAEKGGGFCAYADISLCIHFAFVRLNISRVMIIDL 195
Query: 64 DAHQ 67
DAHQ
Sbjct: 196 DAHQ 199
>gi|297812823|ref|XP_002874295.1| hypothetical protein ARALYDRAFT_489451 [Arabidopsis lyrata subsp.
lyrata]
gi|297320132|gb|EFH50554.1| hypothetical protein ARALYDRAFT_489451 [Arabidopsis lyrata subsp.
lyrata]
Length = 387
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/319 (48%), Positives = 206/319 (64%), Gaps = 15/319 (4%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
I+Y Y++ F +EKLHPFDS KW + +L V F+ + I+EP E S+
Sbjct: 76 IIYSSAYDISFMGIEKLHPFDSSKWGRVCKFL--------VSDGFLEEKAIVEPLEASKI 127
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
LL+ H+E YL SLK S VA I+EV P+ PN+ VQ+ L P R VGGT+ A LA
Sbjct: 128 DLLVVHSENYLNSLKSSATVARITEVPPVAFFPNFLVQQKVLYPFRKQVGGTILAAKLAT 187
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
RGW+INIGGGFHH + +GGGFCA+ADISL + F IS MI+DLDAHQGNG+E
Sbjct: 188 ERGWAINIGGGFHHCTAERGGGFCAFADISLCIHFAFLRLRISRVMIIDLDAHQGNGHET 247
Query: 293 DFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
D ++ R++I++ +A+ I IE+ T YL K++ LE + R+F
Sbjct: 248 DLGDDNRVYILDMYNPNIYPFDYRARRFIDQNIEVVSGTTTDEYLRKLDEALEVASRNFQ 307
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
P++++YNAGTD+L DPLGLL ISP GI RDE VF ARE+ +P+VMLTSGGY+K +AR
Sbjct: 308 PELVIYNAGTDILDGDPLGLLKISPDGITSRDEKVFRFAREKSIPLVMLTSGGYMKSSAR 367
Query: 407 IIADSILNLADLGLI-SRP 424
+IADSI NL+ GLI +RP
Sbjct: 368 VIADSIENLSRQGLIQTRP 386
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 46/64 (71%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LA RGW+INIGGGFHH + +GGGFCA+ADISL + F IS MI+DL
Sbjct: 178 GTILAAKLATERGWAINIGGGFHHCTAERGGGFCAFADISLCIHFAFLRLRISRVMIIDL 237
Query: 64 DAHQ 67
DAHQ
Sbjct: 238 DAHQ 241
>gi|195573625|ref|XP_002104792.1| GD18261 [Drosophila simulans]
gi|194200719|gb|EDX14295.1| GD18261 [Drosophila simulans]
Length = 343
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 159/319 (49%), Positives = 208/319 (65%), Gaps = 16/319 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIV+ Y V F LE+LHPFD+ K KHI L + + + EP E+++
Sbjct: 33 PIVFSRNYAVRFGGLERLHPFDAAKGKHIHKLLCAQLQ--------LDDGSFYEPTELTK 84
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+QL HT YLKSL+WS NVA I+EV + VPN ++Q+ YLRPMR+ G++ AG LA
Sbjct: 85 DQLRRIHTRDYLKSLRWSMNVACIAEVPVMAFVPNRYIQRSYLRPMRFQAAGSILAGKLA 144
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSK--SISTAMIVDLDAHQGNG 289
L GW+IN+GGGFHH +GGGFC YADISLL+ LF+ + + MIVDLDAHQGNG
Sbjct: 145 LDYGWAINLGGGFHHCCSYRGGGFCPYADISLLIVRLFEQEPFRVRRIMIVDLDAHQGNG 204
Query: 290 YEKDFMNETRIFIMETCIT------SKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+E+DF N ++I++ AKE+IRC +EL YTED YL +++ L +SL
Sbjct: 205 HERDFNNVAAVYILDMYNAFVYPRDHVAKESIRCAVELRNYTEDGFYLRQLKRCLMQSLA 264
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
F PD++VYNAGTDVL DPLG LAIS +G+I RD LVF R +P+VML SGGYLK
Sbjct: 265 EFRPDMVVYNAGTDVLEGDPLGNLAISAEGVIERDRLVFSTFRALGIPVVMLLSGGYLKA 324
Query: 404 TARIIADSILNLADLGLIS 422
+A +I DSI+NL GL++
Sbjct: 325 SAGVITDSIVNLRLQGLLN 343
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSK--SISTAMIV 61
G++ AG LAL GW+IN+GGGFHH +GGGFC YADISLL+ LF+ + + MIV
Sbjct: 136 GSILAGKLALDYGWAINLGGGFHHCCSYRGGGFCPYADISLLIVRLFEQEPFRVRRIMIV 195
Query: 62 DLDAHQ 67
DLDAHQ
Sbjct: 196 DLDAHQ 201
>gi|195388622|ref|XP_002052978.1| GJ23587 [Drosophila virilis]
gi|194151064|gb|EDW66498.1| GJ23587 [Drosophila virilis]
Length = 326
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 160/319 (50%), Positives = 207/319 (64%), Gaps = 16/319 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY Y+V F LEKLHPFD+ K KHI L + + + +P E+++
Sbjct: 13 PIVYSKNYSVRFAGLEKLHPFDAAKGKHIQRLLCAELS--------LECGDFYDPLEITK 64
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+LL HT KYLKSLKWS NVA I+EV L+ +PN+ VQ YLRPMRY G++ AG LA
Sbjct: 65 TELLRVHTSKYLKSLKWSANVACIAEVPVLMFLPNFTVQSGYLRPMRYQTAGSILAGKLA 124
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF--QSKSISTAMIVDLDAHQGNG 289
L GW+IN+GGGFHH KGGGFC YADI+LL+ LF +S + AMIVDLDAHQGNG
Sbjct: 125 LEYGWAINLGGGFHHCCSYKGGGFCPYADITLLLVRLFELESSRVQNAMIVDLDAHQGNG 184
Query: 290 YEKDFMNETRIFIMETCIT------SKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+E+DF N ++I++ +AK +IRC +EL TED +YL ++ L ++L
Sbjct: 185 HERDFKNIEAVYILDMYNAFVYPKDHEAKLSIRCGVELKHLTEDAYYLRQLSRCLMQALA 244
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
F PD+++YNAGTD+L DPLG LAIS G+I RD LVF R +PIVML SGGY+
Sbjct: 245 EFKPDVVIYNAGTDILKGDPLGNLAISADGVIERDRLVFSTFRALGIPIVMLLSGGYMNS 304
Query: 404 TARIIADSILNLADLGLIS 422
+ +IADSI+NL G +S
Sbjct: 305 SKHVIADSIVNLQRKGWLS 323
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 49/66 (74%), Gaps = 2/66 (3%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF--QSKSISTAMIV 61
G++ AG LAL GW+IN+GGGFHH KGGGFC YADI+LL+ LF +S + AMIV
Sbjct: 116 GSILAGKLALEYGWAINLGGGFHHCCSYKGGGFCPYADITLLLVRLFELESSRVQNAMIV 175
Query: 62 DLDAHQ 67
DLDAHQ
Sbjct: 176 DLDAHQ 181
>gi|195331776|ref|XP_002032575.1| GM23455 [Drosophila sechellia]
gi|194121518|gb|EDW43561.1| GM23455 [Drosophila sechellia]
Length = 343
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 159/318 (50%), Positives = 207/318 (65%), Gaps = 16/318 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIV+ Y V F LE+LHPFD+ K KHI L + + + EP E+++
Sbjct: 33 PIVFSRNYAVRFGGLERLHPFDAAKGKHIHKLLCAQLQ--------LDDGSFYEPTELTK 84
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+QL HT YLKSL+WS NVA I+EV + VPN ++Q+ YLRPMR+ G++ AG LA
Sbjct: 85 DQLRRIHTRDYLKSLRWSMNVACIAEVPVMAFVPNRYIQRSYLRPMRFQAAGSILAGKLA 144
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSK--SISTAMIVDLDAHQGNG 289
L GW+IN+GGGFHH +GGGFC YADISLL+ LF+ + + MIVDLDAHQGNG
Sbjct: 145 LDYGWAINLGGGFHHCCSYRGGGFCPYADISLLIVRLFEQEPFRVRRIMIVDLDAHQGNG 204
Query: 290 YEKDFMNETRIFIMETCIT------SKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+E+DF N ++I++ AKE+IRC +EL YTED YL +++ L +SL
Sbjct: 205 HERDFNNVAAVYILDMYNAFVYPRDHVAKESIRCAVELRNYTEDGFYLRQLKRCLMQSLA 264
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
F PD++VYNAGTDVL DPLG LAIS +G+I RD LVF R +P+VML SGGYLK
Sbjct: 265 EFRPDMVVYNAGTDVLEGDPLGNLAISAEGVIERDRLVFSTFRALGIPVVMLLSGGYLKA 324
Query: 404 TARIIADSILNLADLGLI 421
+A +I DSI+NL GL+
Sbjct: 325 SAGVITDSIVNLRLQGLL 342
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSK--SISTAMIV 61
G++ AG LAL GW+IN+GGGFHH +GGGFC YADISLL+ LF+ + + MIV
Sbjct: 136 GSILAGKLALDYGWAINLGGGFHHCCSYRGGGFCPYADISLLIVRLFEQEPFRVRRIMIV 195
Query: 62 DLDAHQ 67
DLDAHQ
Sbjct: 196 DLDAHQ 201
>gi|24649807|ref|NP_733048.1| histone deacetylase X, isoform A [Drosophila melanogaster]
gi|386766464|ref|NP_001247296.1| histone deacetylase X, isoform B [Drosophila melanogaster]
gi|7301219|gb|AAF56350.1| histone deacetylase X, isoform A [Drosophila melanogaster]
gi|227116367|gb|ACP19285.1| IP11169p [Drosophila melanogaster]
gi|383292938|gb|AFH06613.1| histone deacetylase X, isoform B [Drosophila melanogaster]
Length = 343
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 159/319 (49%), Positives = 208/319 (65%), Gaps = 16/319 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIV+ Y V F LE+LHPFD+ K KHI L + + + EP E+++
Sbjct: 33 PIVFSRNYAVRFGGLERLHPFDAAKGKHIHKLLCAQLQ--------LDDGSFYEPTELTK 84
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+QL HT +YLKSL+WS NVA I+EV + VPN ++Q+ YLRPMR+ G++ AG LA
Sbjct: 85 DQLRRIHTREYLKSLRWSMNVACIAEVPLMAFVPNRYIQRSYLRPMRFQAAGSILAGKLA 144
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSK--SISTAMIVDLDAHQGNG 289
L GW+IN+GGGFHH +GGGFC YADISLL+ LF+ + + MIVDLDAHQGNG
Sbjct: 145 LDYGWAINLGGGFHHCCSYRGGGFCPYADISLLIVRLFEQEPFRVRRIMIVDLDAHQGNG 204
Query: 290 YEKDFMNETRIFIMETCIT------SKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+E+DF N ++I + AKE+IRC +EL YTED YL +++ L +SL
Sbjct: 205 HERDFNNVAAVYIFDMYNAFVYPRDHVAKESIRCAVELRNYTEDGFYLRQLKRCLMQSLA 264
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
F PD++VYNAGTDVL DPLG LAIS +G+I RD LVF R +P+VML SGGYLK
Sbjct: 265 EFRPDMVVYNAGTDVLEGDPLGNLAISAEGVIERDRLVFSTFRALGIPVVMLLSGGYLKA 324
Query: 404 TARIIADSILNLADLGLIS 422
+A +I DSI+NL GL++
Sbjct: 325 SAGVITDSIVNLRLQGLLN 343
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSK--SISTAMIV 61
G++ AG LAL GW+IN+GGGFHH +GGGFC YADISLL+ LF+ + + MIV
Sbjct: 136 GSILAGKLALDYGWAINLGGGFHHCCSYRGGGFCPYADISLLIVRLFEQEPFRVRRIMIV 195
Query: 62 DLDAHQ 67
DLDAHQ
Sbjct: 196 DLDAHQ 201
>gi|66772255|gb|AAY55439.1| IP11069p [Drosophila melanogaster]
Length = 332
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 159/319 (49%), Positives = 208/319 (65%), Gaps = 16/319 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIV+ Y V F LE+LHPFD+ K KHI L + + + EP E+++
Sbjct: 22 PIVFSRNYAVRFGGLERLHPFDAAKGKHIHKLLCAQLQ--------LDDGSFYEPTELTK 73
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+QL HT +YLKSL+WS NVA I+EV + VPN ++Q+ YLRPMR+ G++ AG LA
Sbjct: 74 DQLRRIHTREYLKSLRWSMNVACIAEVPLMAFVPNRYIQRSYLRPMRFQAAGSILAGKLA 133
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSK--SISTAMIVDLDAHQGNG 289
L GW+IN+GGGFHH +GGGFC YADISLL+ LF+ + + MIVDLDAHQGNG
Sbjct: 134 LDYGWAINLGGGFHHCCSYRGGGFCPYADISLLIVRLFEQEPFRVRRIMIVDLDAHQGNG 193
Query: 290 YEKDFMNETRIFIMETCIT------SKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+E+DF N ++I + AKE+IRC +EL YTED YL +++ L +SL
Sbjct: 194 HERDFNNVAAVYIFDMYNAFVYPRDHVAKESIRCAVELRNYTEDGFYLRQLKRCLMQSLA 253
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
F PD++VYNAGTDVL DPLG LAIS +G+I RD LVF R +P+VML SGGYLK
Sbjct: 254 EFRPDMVVYNAGTDVLEGDPLGNLAISAEGVIERDRLVFSTFRALGIPVVMLLSGGYLKA 313
Query: 404 TARIIADSILNLADLGLIS 422
+A +I DSI+NL GL++
Sbjct: 314 SAGVITDSIVNLRLQGLLN 332
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSK--SISTAMIV 61
G++ AG LAL GW+IN+GGGFHH +GGGFC YADISLL+ LF+ + + MIV
Sbjct: 125 GSILAGKLALDYGWAINLGGGFHHCCSYRGGGFCPYADISLLIVRLFEQEPFRVRRIMIV 184
Query: 62 DLDAHQ 67
DLDAHQ
Sbjct: 185 DLDAHQ 190
>gi|242060988|ref|XP_002451783.1| hypothetical protein SORBIDRAFT_04g007780 [Sorghum bicolor]
gi|241931614|gb|EES04759.1| hypothetical protein SORBIDRAFT_04g007780 [Sorghum bicolor]
Length = 365
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 157/337 (46%), Positives = 215/337 (63%), Gaps = 27/337 (8%)
Query: 104 ESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNI 163
+ V + P+VY P Y++ F +EK HPFDS KW + N+L V+A + D I
Sbjct: 27 DGVPSSKAPVVYSPAYDIEFNGIEKQHPFDSAKWGRVRNFL--------VDAGLLQNDRI 78
Query: 164 IEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGG 223
IEP E SE+ LL+ H+E YL SLK S VA I EV + +PN VQ+ L P R VGG
Sbjct: 79 IEPLEASEDDLLVVHSESYLNSLKSSAKVARIVEVPAVALLPNLLVQQKLLYPFRKQVGG 138
Query: 224 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 283
++ + LAL RG +INIGGGFHH S +GGGFCAYADISL + F +IS MI+DLD
Sbjct: 139 SILSAKLALERGCAINIGGGFHHCSAEEGGGFCAYADISLCIHFAFVRLNISRVMIIDLD 198
Query: 284 AHQGNGYEKDFMNETRIFIMET----------CITSK---------AKEAIRCRIELAPY 324
AHQGNG+EKDF ++ R++ ++ C+ S+ AK+ I +IEL
Sbjct: 199 AHQGNGHEKDFGSDERVYTLDMYNSGIYPFCICLQSELPKSANDHVAKKYIDQKIELHSG 258
Query: 325 TEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMK 384
T+ + YLE ++ L+ + F P +I+YNAGTD+L DPLG L +SP G+I RDE VF
Sbjct: 259 TKTEDYLEILDKALKVAESRFQPQLILYNAGTDILDGDPLGSLKVSPDGVITRDEKVFRF 318
Query: 385 ARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLI 421
A+++ +P++MLTSGGY+K +AR+IADSI+NL++ LI
Sbjct: 319 AKDQSIPLLMLTSGGYMKSSARVIADSIINLSNKNLI 355
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ + LAL RG +INIGGGFHH S +GGGFCAYADISL + F +IS MI+DL
Sbjct: 138 GSILSAKLALERGCAINIGGGFHHCSAEEGGGFCAYADISLCIHFAFVRLNISRVMIIDL 197
Query: 64 DAHQ 67
DAHQ
Sbjct: 198 DAHQ 201
>gi|357437493|ref|XP_003589022.1| Histone deacetylase [Medicago truncatula]
gi|355478070|gb|AES59273.1| Histone deacetylase [Medicago truncatula]
Length = 350
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 154/316 (48%), Positives = 205/316 (64%), Gaps = 14/316 (4%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y Y++ F +EKLHPFDS KW I +L + + ++ I+EP E S+
Sbjct: 34 PLIYSDSYDISFLGIEKLHPFDSSKWGRICKFL--------ISFGVLDKNRIVEPLEASK 85
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ LL+ H+E YL SLK S NVA I EV P+ PN VQ+ L P R VGGT+ A LA
Sbjct: 86 DDLLVVHSESYLNSLKESSNVAKIIEVPPVALFPNCLVQRKVLFPFRKQVGGTILAAKLA 145
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
RGW+IN+GGGFHH S GGGFCAYADISL + F +IS +I+DLDAHQGNG+E
Sbjct: 146 KERGWAINVGGGFHHCSAENGGGFCAYADISLCIHFAFVQLNISRVIIIDLDAHQGNGHE 205
Query: 292 KDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
DF ++ R++I++ + +A+ I ++E+ T + YL K++ LE + R F
Sbjct: 206 MDFADDNRVYILDMYNPGIYPLDHEARSYINQKVEVKSGTRTEEYLLKLDEALEVAGRRF 265
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
P+++VYNAGTD+L DPLG L ISP GI RDE VF AR++ +PIVMLTSGGY+K +A
Sbjct: 266 NPELLVYNAGTDILEGDPLGRLKISPDGIALRDEKVFRFARKKNIPIVMLTSGGYMKSSA 325
Query: 406 RIIADSILNLADLGLI 421
R+IADSILNL LI
Sbjct: 326 RVIADSILNLEKKCLI 341
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 46/64 (71%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LA RGW+IN+GGGFHH S GGGFCAYADISL + F +IS +I+DL
Sbjct: 137 GTILAAKLAKERGWAINVGGGFHHCSAENGGGFCAYADISLCIHFAFVQLNISRVIIIDL 196
Query: 64 DAHQ 67
DAHQ
Sbjct: 197 DAHQ 200
>gi|195504646|ref|XP_002099168.1| GE10768 [Drosophila yakuba]
gi|194185269|gb|EDW98880.1| GE10768 [Drosophila yakuba]
Length = 343
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 161/341 (47%), Positives = 218/341 (63%), Gaps = 16/341 (4%)
Query: 90 ERKALEDEITSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIF 149
E + E+ + + +++ + PIV+ Y V F LE+LHPFD+ K KHI L +
Sbjct: 11 EEQESEEVVWVKREDARIAGKLPIVFSRNYAVRFGGLERLHPFDAAKGKHIHKLLCAQL- 69
Query: 150 NYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFV 209
L E F EP E+++ QL HT YLKSL+WS NVA I+EV + VPN ++
Sbjct: 70 -QLDEGSFY------EPTELTKNQLRRIHTRGYLKSLRWSMNVACIAEVPVMAFVPNRYI 122
Query: 210 QKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF 269
Q+ YLRPMR+ G++ AG LAL GW+IN+GGGFHH +GGGFC YADISLL+ LF
Sbjct: 123 QRSYLRPMRFQAAGSILAGRLALDYGWAINLGGGFHHCCSYRGGGFCPYADISLLIVRLF 182
Query: 270 QSK--SISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCIT------SKAKEAIRCRIEL 321
+ + + MIVDLDAHQGNG+E+DF N ++I++ AKE+IRC +EL
Sbjct: 183 EQEPYRVRRIMIVDLDAHQGNGHERDFNNVAAVYILDMYNAFVYPRDHVAKESIRCAVEL 242
Query: 322 APYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV 381
+TED YL +++ L +SL F PD+++YNAGTDVL DPLG LAIS +G++ RD LV
Sbjct: 243 RNHTEDAFYLRQLKRCLMQSLAEFRPDVVIYNAGTDVLEGDPLGNLAISAEGVMERDRLV 302
Query: 382 FMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLIS 422
F R +P+VML SGGYLK +A +IA SI+NL GL++
Sbjct: 303 FSTFRTLGIPVVMLLSGGYLKASAGVIAASIVNLRLQGLLN 343
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSK--SISTAMIV 61
G++ AG LAL GW+IN+GGGFHH +GGGFC YADISLL+ LF+ + + MIV
Sbjct: 136 GSILAGRLALDYGWAINLGGGFHHCCSYRGGGFCPYADISLLIVRLFEQEPYRVRRIMIV 195
Query: 62 DLDAHQ 67
DLDAHQ
Sbjct: 196 DLDAHQ 201
>gi|195158946|ref|XP_002020344.1| GL13561 [Drosophila persimilis]
gi|198449329|ref|XP_001357545.2| GA16023 [Drosophila pseudoobscura pseudoobscura]
gi|194117113|gb|EDW39156.1| GL13561 [Drosophila persimilis]
gi|198130558|gb|EAL26679.2| GA16023 [Drosophila pseudoobscura pseudoobscura]
Length = 331
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 160/336 (47%), Positives = 214/336 (63%), Gaps = 16/336 (4%)
Query: 95 EDEITSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVE 154
E+ + +++ V PIVY Y V F LE+LHPF++ K KHI L + LVE
Sbjct: 4 EEIVWVRKEDARVPGKLPIVYSKSYAVRFHGLERLHPFNAAKGKHIHKALCAEL--SLVE 61
Query: 155 AKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYL 214
F EP+E+++ QL HT +YL+SL+WS NVA I+EV + VPN ++Q+ YL
Sbjct: 62 GSFY------EPEELTKHQLRRIHTREYLRSLRWSLNVARIAEVSLMAFVPNKYLQQAYL 115
Query: 215 RPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSK-- 272
RPMR+ G++ AG LAL GW+IN+GGGFHH +GGGFC YADISLL+ LF+ +
Sbjct: 116 RPMRFQAAGSILAGKLALDYGWAINLGGGFHHCCSNRGGGFCPYADISLLIVRLFEQEPC 175
Query: 273 SISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCIT------SKAKEAIRCRIELAPYTE 326
+ MIVDLDAHQGNG+E+DF N +FI++ AK +IRC +EL TE
Sbjct: 176 RVRRIMIVDLDAHQGNGHERDFNNWETVFILDIYNAFIYPRDHAAKLSIRCGVELQNQTE 235
Query: 327 DQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKAR 386
D +YL ++ L +SL F PD+++YNAGTDVL DPLG L IS +G++ RD LVF R
Sbjct: 236 DAYYLRQLSRCLMQSLADFRPDVVIYNAGTDVLKGDPLGNLDISAEGVLERDRLVFSTFR 295
Query: 387 ERRVPIVMLTSGGYLKQTARIIADSILNLADLGLIS 422
+P+VML SGGY K +A +IADSI+NL GL+
Sbjct: 296 ALGIPVVMLLSGGYTKASAHVIADSIVNLRQHGLLD 331
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSK--SISTAMIV 61
G++ AG LAL GW+IN+GGGFHH +GGGFC YADISLL+ LF+ + + MIV
Sbjct: 124 GSILAGKLALDYGWAINLGGGFHHCCSNRGGGFCPYADISLLIVRLFEQEPCRVRRIMIV 183
Query: 62 DLDAHQ 67
DLDAHQ
Sbjct: 184 DLDAHQ 189
>gi|194742864|ref|XP_001953920.1| GF18009 [Drosophila ananassae]
gi|190626957|gb|EDV42481.1| GF18009 [Drosophila ananassae]
Length = 341
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 156/319 (48%), Positives = 207/319 (64%), Gaps = 18/319 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY +Y V F LE+LHPFD+ K KHI L + L + F + +++
Sbjct: 33 PIVYSKKYAVRFAGLERLHPFDAAKGKHIQKILCTEL--NLNDGSFY--------ESLTK 82
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+QL HT YL+SL WS NVA I+EV + VPN F+Q YLRPMR+ G++ AG LA
Sbjct: 83 DQLRRIHTRDYLRSLDWSMNVACIAEVPVMAFVPNRFIQSSYLRPMRFQAAGSILAGKLA 142
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSK--SISTAMIVDLDAHQGNG 289
L GW+IN+GGGFHH +GGGFC YADISLL+ LF+ + + MIVDLDAHQGNG
Sbjct: 143 LDYGWAINLGGGFHHCCSYRGGGFCPYADISLLIIRLFEQEPFRVRRIMIVDLDAHQGNG 202
Query: 290 YEKDFMNETRIFIMETCIT------SKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+E+DF N ++I++ AK++IRC +EL +TED YL ++ L +SL
Sbjct: 203 HERDFTNVAAVYILDMYNAFVYPKDHAAKQSIRCAVELRHHTEDAFYLRQLSRCLMQSLA 262
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
F PD+++YNAGTDVL DPLG L+I+P+G++ RD LVF R R+P+VML SGGYLK+
Sbjct: 263 EFRPDVVIYNAGTDVLKGDPLGNLSITPEGVVERDRLVFSTFRTLRIPVVMLLSGGYLKE 322
Query: 404 TARIIADSILNLADLGLIS 422
+A +IADSI NL GL+
Sbjct: 323 SAGVIADSIANLRQQGLLD 341
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSK--SISTAMIV 61
G++ AG LAL GW+IN+GGGFHH +GGGFC YADISLL+ LF+ + + MIV
Sbjct: 134 GSILAGKLALDYGWAINLGGGFHHCCSYRGGGFCPYADISLLIIRLFEQEPFRVRRIMIV 193
Query: 62 DLDAHQ 67
DLDAHQ
Sbjct: 194 DLDAHQ 199
>gi|344241605|gb|EGV97708.1| Histone deacetylase 11 [Cricetulus griseus]
Length = 301
Score = 304 bits (778), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 154/319 (48%), Positives = 202/319 (63%), Gaps = 46/319 (14%)
Query: 104 ESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNI 163
+ V + WPIVY P YN+ F LEKLHPFD+ KW + N+L E K ++ +
Sbjct: 8 QHVPEKRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLLSDGML 59
Query: 164 IEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGG 223
+E +E SEE LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R GG
Sbjct: 60 VEAREASEEDLLVVHTRRYLNELKWSFVVATITEIPPVIFLPNFLVQRKVLRPLRTQTGG 119
Query: 224 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 283
T+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K++
Sbjct: 120 TIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKVVI-------------- 165
Query: 284 AHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
C++ EAIR ++EL TED+ YLEK+E + RSL+
Sbjct: 166 ----------------------CVS--FPEAIRRKVELEWGTEDEEYLEKVERNVRRSLQ 201
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD++VYNAGTDVL D LG L+ISP GI++RDE+VF R +PI+M+TSGGY K+
Sbjct: 202 EHLPDVVVYNAGTDVLEGDRLGGLSISPAGIVKRDEVVFRLVRAHDIPILMVTSGGYQKR 261
Query: 404 TARIIADSILNLADLGLIS 422
TARIIADSILNL DLGLI
Sbjct: 262 TARIIADSILNLHDLGLIG 280
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 39/47 (82%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF 50
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K++
Sbjct: 119 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKVVI 165
>gi|449447110|ref|XP_004141312.1| PREDICTED: histone deacetylase 2-like [Cucumis sativus]
gi|449486647|ref|XP_004157356.1| PREDICTED: histone deacetylase 2-like [Cucumis sativus]
Length = 351
Score = 303 bits (777), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 154/316 (48%), Positives = 207/316 (65%), Gaps = 14/316 (4%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y Y++ F +EKLHPFDSKKW + +L + A + +D II+P E +
Sbjct: 35 PVIYSSSYDISFLGIEKLHPFDSKKWGRVCQFL--------IAAGVLRKDQIIKPLEAKK 86
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
LL+ H E YL SLK S NVA I EV P+ P+ V++ RP R VGG++ AG +A
Sbjct: 87 NDLLVVHPESYLNSLKNSSNVAKIIEVPPVALFPHCVVKEKVQRPFRNQVGGSILAGKVA 146
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
+GW+IN+GGGFHH S +GGGFC YADISL + F +IS AMI+DLDAHQGNG+E
Sbjct: 147 KEKGWAINVGGGFHHCSAERGGGFCVYADISLCIHYAFVQLNISKAMIIDLDAHQGNGHE 206
Query: 292 KDFMNETRIFIMET---CITSKAKEAIRC---RIELAPYTEDQHYLEKIEAGLERSLRSF 345
DF ++ R++I++ I EA RC ++E+ T YL+K++ LE + S+
Sbjct: 207 MDFAHDRRVYILDMFNPGIYPFDYEARRCIDQKVEVVSGTTTSEYLKKLDEALEVAATSY 266
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
P++IVYNAGTD+L DPLGLL IS +GI +RDE VF AR R +PIVMLTSGGY+K +A
Sbjct: 267 DPELIVYNAGTDILDGDPLGLLKISAEGIAKRDEKVFRFARARNIPIVMLTSGGYMKSSA 326
Query: 406 RIIADSILNLADLGLI 421
++IADSI NL+ LI
Sbjct: 327 KVIADSIENLSKQRLI 342
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 52/74 (70%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ AG +A +GW+IN+GGGFHH S +GGGFC YADISL + F +IS AMI+DL
Sbjct: 138 GSILAGKVAKEKGWAINVGGGFHHCSAERGGGFCVYADISLCIHYAFVQLNISKAMIIDL 197
Query: 64 DAHQFSDYYFPSAH 77
DAHQ + + AH
Sbjct: 198 DAHQGNGHEMDFAH 211
>gi|356564065|ref|XP_003550277.1| PREDICTED: histone deacetylase 2-like [Glycine max]
Length = 348
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 151/316 (47%), Positives = 206/316 (65%), Gaps = 14/316 (4%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y Y++ F +EKLHPFDS KW I +L V + + ++EP E S+
Sbjct: 32 PLIYSASYDIEFLGIEKLHPFDSSKWGRICGFL--------VSFGILDKKCVVEPLEASK 83
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ LL+ H+E YL +LK S VA I EV P+ +PN VQ+ L P R VGGT+ A LA
Sbjct: 84 DDLLVVHSESYLNTLKQSSKVAMIVEVPPVALIPNCLVQQKVLFPFRKQVGGTILAAKLA 143
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
RGW+IN+GGGFHH S KGGGFCAYADISL + F +IS MI+DLDAHQGNG+E
Sbjct: 144 KERGWAINMGGGFHHCSAQKGGGFCAYADISLCIHFAFVRLNISRVMIIDLDAHQGNGHE 203
Query: 292 KDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
DF ++R++I++ + +A+ I ++E+ T + YL+K++ LE + F
Sbjct: 204 MDFAYDSRVYILDMYNPGIYPLDYEARNYINQKVEVKSGTVTEEYLQKLDEALEVAGHRF 263
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
P++++YNAGTD+L DPLG L ISP+GI RDE VF ARE+ +PIVMLTSGGY+K +A
Sbjct: 264 NPELVIYNAGTDILEGDPLGRLEISPEGITLRDEKVFRFAREKNIPIVMLTSGGYMKSSA 323
Query: 406 RIIADSILNLADLGLI 421
+IADSI+NL+ LI
Sbjct: 324 GVIADSIVNLSKKCLI 339
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 47/64 (73%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LA RGW+IN+GGGFHH S KGGGFCAYADISL + F +IS MI+DL
Sbjct: 135 GTILAAKLAKERGWAINMGGGFHHCSAQKGGGFCAYADISLCIHFAFVRLNISRVMIIDL 194
Query: 64 DAHQ 67
DAHQ
Sbjct: 195 DAHQ 198
>gi|291393305|ref|XP_002713169.1| PREDICTED: histone deacetylase 11-like [Oryctolagus cuniculus]
Length = 296
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 157/306 (51%), Positives = 202/306 (66%), Gaps = 38/306 (12%)
Query: 126 LEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKS 185
LEKLHPFD+ KW + N+L E K +T ++E +E SEE LL+ HT +YL
Sbjct: 3 LEKLHPFDAGKWGKVINFLK--------EEKLLTDGMLVEAREASEEDLLVVHTRRYLNE 54
Query: 186 LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFH 245
LK + LRP+R GGT+ AG LA+ RGW+INIGGGFH
Sbjct: 55 LK-----------------------RKVLRPLRTQTGGTIMAGKLAVERGWAINIGGGFH 91
Query: 246 HASETKGGGFCAYADISLLVKLLF-QSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIME 304
H S +GGGFCAYADI+L +K LF + + IS A I+DLDAHQGNG+E+DFM + R++IM+
Sbjct: 92 HCSSDRGGGFCAYADITLAIKFLFDRVEGISRATIIDLDAHQGNGHERDFMEDKRVYIMD 151
Query: 305 T------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDV 358
AK+AIR ++EL TED+ YL K+E +E++LR + PD++VYNAGTD+
Sbjct: 152 VYNRHIYPGDRFAKQAIRRKVELEWGTEDEEYLGKVEQHVEKALREYLPDVVVYNAGTDI 211
Query: 359 LLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADL 418
L D LG LAISP GI++RDELVF R +VPI+M+TSGGY K+TARIIADSILNL +L
Sbjct: 212 LEGDRLGGLAISPGGIVKRDELVFRVVRGHQVPILMVTSGGYQKRTARIIADSILNLHNL 271
Query: 419 GLISRP 424
GLI P
Sbjct: 272 GLIGPP 277
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF-QSKSISTAMIVD 62
GT+ AG LA+ RGW+INIGGGFHH S +GGGFCAYADI+L +K LF + + IS A I+D
Sbjct: 69 GTIMAGKLAVERGWAINIGGGFHHCSSDRGGGFCAYADITLAIKFLFDRVEGISRATIID 128
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 129 LDAHQ 133
>gi|354465542|ref|XP_003495238.1| PREDICTED: histone deacetylase 11-like [Cricetulus griseus]
Length = 443
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 152/319 (47%), Positives = 201/319 (63%), Gaps = 44/319 (13%)
Query: 104 ESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNI 163
+ V + WPIVY P YN+ F LEKLHPFD+ KW + N+L E K ++ +
Sbjct: 148 QHVPEKRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLLSDGML 199
Query: 164 IEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGG 223
+E +E SEE LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R GG
Sbjct: 200 VEAREASEEDLLVVHTRRYLNELKWSFVVATITEIPPVIFLPNFLVQRKVLRPLRTQTGG 259
Query: 224 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 283
T+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K+ +++
Sbjct: 260 TIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKVCLNLPYLTS------- 312
Query: 284 AHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+AIR ++EL TED+ YLEK+E + RSL+
Sbjct: 313 -----------------------------KAIRRKVELEWGTEDEEYLEKVERNVRRSLQ 343
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD++VYNAGTDVL D LG L+ISP GI++RDE+VF R +PI+M+TSGGY K+
Sbjct: 344 EHLPDVVVYNAGTDVLEGDRLGGLSISPAGIVKRDEVVFRLVRAHDIPILMVTSGGYQKR 403
Query: 404 TARIIADSILNLADLGLIS 422
TARIIADSILNL DLGLI
Sbjct: 404 TARIIADSILNLHDLGLIG 422
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 42/57 (73%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMI 60
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K+ +++ I
Sbjct: 259 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKVCLNLPYLTSKAI 315
>gi|332816489|ref|XP_530587.3| PREDICTED: histone deacetylase 11 [Pan troglodytes]
Length = 308
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 158/331 (47%), Positives = 206/331 (62%), Gaps = 54/331 (16%)
Query: 99 TSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI 158
T++ + V WPIVY P YN+ F LEKLHPFD+ KW + N+L E K +
Sbjct: 4 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLL 55
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
+ ++E +E SEE LL+ HT +YL LK
Sbjct: 56 SDSMLVEAREASEEDLLVVHTRRYLNELK------------------------------- 84
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTA 277
AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A
Sbjct: 85 --------AGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRA 136
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYL 331
I+DLDAHQGNG+E+DFM++ R++IM+ AK+AIR ++EL TED YL
Sbjct: 137 TIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYL 196
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
+K+E +++SL+ PD++VYNAGTD+L D LG L+ISP GI++RDELVF R RRVP
Sbjct: 197 DKVERNIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVP 256
Query: 392 IVMLTSGGYLKQTARIIADSILNLADLGLIS 422
I+M+TSGGY K+TARIIADSILNL LGLI
Sbjct: 257 ILMVTSGGYQKRTARIIADSILNLFGLGLIG 287
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
Query: 6 LEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLD 64
L+AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+DLD
Sbjct: 83 LKAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLD 142
Query: 65 AHQ 67
AHQ
Sbjct: 143 AHQ 145
>gi|209862883|ref|NP_001129513.1| histone deacetylase 11 isoform 2 [Homo sapiens]
gi|194375634|dbj|BAG56762.1| unnamed protein product [Homo sapiens]
Length = 296
Score = 300 bits (769), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 154/304 (50%), Positives = 201/304 (66%), Gaps = 38/304 (12%)
Query: 126 LEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKS 185
LEKLHPFD+ KW + N+L E K ++ ++E +E SEE LL+ HT +YL
Sbjct: 3 LEKLHPFDAGKWGKVINFLK--------EEKLLSDSMLVEAREASEEDLLVVHTRRYLNE 54
Query: 186 LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFH 245
LK + LRP+R GGT+ AG LA+ RGW+IN+GGGFH
Sbjct: 55 LK-----------------------RKVLRPLRTQTGGTIMAGKLAVERGWAINVGGGFH 91
Query: 246 HASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNGYEKDFMNETRIFIME 304
H S +GGGFCAYADI+L +K LF+ + IS A I+DLDAHQGNG+E+DFM++ R++IM+
Sbjct: 92 HCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAHQGNGHERDFMDDKRVYIMD 151
Query: 305 T------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDV 358
AK+AIR ++EL TED YL+K+E +++SL+ PD++VYNAGTD+
Sbjct: 152 VYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIKKSLQEHLPDVVVYNAGTDI 211
Query: 359 LLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADL 418
L D LG L+ISP GI++RDELVF R RRVPI+M+TSGGY K+TARIIADSILNL L
Sbjct: 212 LEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVTSGGYQKRTARIIADSILNLFGL 271
Query: 419 GLIS 422
GLI
Sbjct: 272 GLIG 275
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 69 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 128
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 129 LDAHQ 133
>gi|403268333|ref|XP_003926231.1| PREDICTED: histone deacetylase 11 [Saimiri boliviensis boliviensis]
Length = 296
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 154/304 (50%), Positives = 200/304 (65%), Gaps = 38/304 (12%)
Query: 126 LEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKS 185
LEKLHPFD+ KW + N+L E K ++ ++E +E SEE LL+ HT +YL
Sbjct: 3 LEKLHPFDAGKWGKVINFLK--------EEKLLSDSMLVEAREASEEDLLVVHTRRYLNE 54
Query: 186 LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFH 245
LK + LRP+R GGT+ AG LA+ RGW+IN+GGGFH
Sbjct: 55 LK-----------------------RKVLRPLRTQTGGTIMAGKLAVERGWAINVGGGFH 91
Query: 246 HASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNGYEKDFMNETRIFIME 304
H S +GGGFCAYADI+L +K LF+ + IS A I+DLDAHQGNG+E+DFM++ R++IM+
Sbjct: 92 HCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAHQGNGHERDFMDDKRVYIMD 151
Query: 305 T------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDV 358
AK+AIR ++EL TED YL K+E +E++L+ PD++VYNAGTD+
Sbjct: 152 VYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLVKVERNIEKALQEHLPDVVVYNAGTDI 211
Query: 359 LLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADL 418
L D LG L+ISP GI++RDELVF R RRVPI+M+TSGGY K+TARIIADSILNL L
Sbjct: 212 LEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVTSGGYQKRTARIIADSILNLFGL 271
Query: 419 GLIS 422
GLI
Sbjct: 272 GLIG 275
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 69 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 128
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 129 LDAHQ 133
>gi|327266298|ref|XP_003217943.1| PREDICTED: histone deacetylase 11-like [Anolis carolinensis]
Length = 286
Score = 297 bits (760), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 154/304 (50%), Positives = 199/304 (65%), Gaps = 38/304 (12%)
Query: 126 LEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKS 185
LEKLHPFDS KW + N+L EA +T D+I+ QE E+ LL+ HT +YL
Sbjct: 3 LEKLHPFDSGKWGKVINFL--------KEANLVTDDSIVRAQEAREDDLLVVHTRQYLNR 54
Query: 186 LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFH 245
LK + LRP+R GGT+ AG LA+ RGW+INIGGGFH
Sbjct: 55 LK-----------------------RKVLRPLRIQTGGTIMAGKLAIERGWAINIGGGFH 91
Query: 246 HASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNGYEKDFMNETRIFIME 304
H S +GGGFCAYADI+L +K LF+ + +S A I+DLDAHQGNG+E+DFM++ R++IM+
Sbjct: 92 HCSGDRGGGFCAYADITLTIKFLFERMEGVSRATIIDLDAHQGNGHERDFMDDKRVYIMD 151
Query: 305 TCI------TSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDV 358
AK AI ++EL TED YL+K++A +E +L DII+YNAGTD+
Sbjct: 152 VYNRYIYPGDGFAKRAISRKVELEWGTEDAEYLQKVKAHVEAALDEVKSDIIIYNAGTDI 211
Query: 359 LLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADL 418
L DPLG LAISPQGII RDE+VF A + ++PI+M+TSGGY+K+TARIIADSILNL +
Sbjct: 212 LYGDPLGGLAISPQGIIERDEIVFRAAWKHQIPILMVTSGGYMKRTARIIADSILNLYHV 271
Query: 419 GLIS 422
GLI
Sbjct: 272 GLID 275
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+INIGGGFHH S +GGGFCAYADI+L +K LF+ + +S A I+D
Sbjct: 69 GTIMAGKLAIERGWAINIGGGFHHCSGDRGGGFCAYADITLTIKFLFERMEGVSRATIID 128
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 129 LDAHQ 133
>gi|410951796|ref|XP_003982579.1| PREDICTED: histone deacetylase 11 [Felis catus]
Length = 296
Score = 297 bits (760), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 152/304 (50%), Positives = 201/304 (66%), Gaps = 38/304 (12%)
Query: 126 LEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKS 185
LEKLHPFD+ KW + ++L E K ++ ++E +E S+E LL+ HT +YL
Sbjct: 3 LEKLHPFDAGKWGKVISFLK--------EEKLLSDGMLVEAREASDEDLLVVHTRRYLNE 54
Query: 186 LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFH 245
LK + L+P+R GGT+ AG LA+ RGW+IN+GGGFH
Sbjct: 55 LK-----------------------RKVLKPLRTQTGGTIMAGKLAMERGWAINVGGGFH 91
Query: 246 HASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNGYEKDFMNETRIFIME 304
H S +GGGFCAYADI+L +K LF+ + IS A IVDLDAHQGNG+E+DFM + R++IM+
Sbjct: 92 HCSSDRGGGFCAYADITLAIKFLFERVEGISRATIVDLDAHQGNGHERDFMGDKRVYIMD 151
Query: 305 T------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDV 358
AK+AIR ++EL TED YL+K+E L+++L+ PD++VYNAGTD+
Sbjct: 152 VYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNLQKALQEHLPDVVVYNAGTDI 211
Query: 359 LLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADL 418
L D LG L+ISPQGI++RDELVF R R+VPI+M+TSGGY K+TARIIADSILNL L
Sbjct: 212 LEGDRLGGLSISPQGIVKRDELVFRVVRGRQVPILMVTSGGYQKRTARIIADSILNLYSL 271
Query: 419 GLIS 422
GLI
Sbjct: 272 GLIG 275
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A IVD
Sbjct: 69 GTIMAGKLAMERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIVD 128
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 129 LDAHQ 133
>gi|402859323|ref|XP_003894112.1| PREDICTED: histone deacetylase 11 isoform 2 [Papio anubis]
Length = 296
Score = 296 bits (759), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 153/304 (50%), Positives = 199/304 (65%), Gaps = 38/304 (12%)
Query: 126 LEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKS 185
LEKLHPFD+ KW + N+L E K ++ ++E +E SEE LL+ HT +YL
Sbjct: 3 LEKLHPFDAGKWGKVINFLK--------EEKLLSDSMLVEAREASEEDLLVVHTRRYLNE 54
Query: 186 LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFH 245
LK + LRP+R GGT+ AG LA+ RGW+IN+GGGFH
Sbjct: 55 LK-----------------------RKVLRPLRTQTGGTIMAGKLAVERGWAINVGGGFH 91
Query: 246 HASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNGYEKDFMNETRIFIME 304
H S +GGGFCAYADI+L +K LF+ + IS A I+DLDAHQGNG+E+DFM++ R++IM+
Sbjct: 92 HCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAHQGNGHERDFMDDKRVYIMD 151
Query: 305 T------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDV 358
AK+AIR ++EL TED YL+K+ +E+SL+ PD++VYNAGTD+
Sbjct: 152 VYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVGRNIEKSLQEHLPDVVVYNAGTDI 211
Query: 359 LLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADL 418
L D LG L+ISP GI++RDELVF R R VPI+M+TSGGY K+TARIIADSILNL L
Sbjct: 212 LEGDRLGGLSISPAGIVKRDELVFRMVRGRHVPILMVTSGGYQKRTARIIADSILNLFGL 271
Query: 419 GLIS 422
GLI
Sbjct: 272 GLIG 275
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 69 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 128
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 129 LDAHQ 133
>gi|302804117|ref|XP_002983811.1| hypothetical protein SELMODRAFT_180494 [Selaginella moellendorffii]
gi|300148648|gb|EFJ15307.1| hypothetical protein SELMODRAFT_180494 [Selaginella moellendorffii]
Length = 350
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 146/316 (46%), Positives = 206/316 (65%), Gaps = 14/316 (4%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y YN+ F LEKLHPFDS KW + L ++ + I+EP E ++
Sbjct: 37 PVIYSAVYNIAFLGLEKLHPFDSSKWGRVCELL--------IQKGELESRRIMEPGEATK 88
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E LL+ HT +YL+SLK S+ A+I EV P+ +P ++ L P R VGG++ AG +A
Sbjct: 89 EDLLVVHTPEYLESLKRSYVAASILEVPPVALLPYCIIRSKVLVPFRKQVGGSVLAGKVA 148
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
RGW+IN+GGGFHH +GGGFC YADI+L + F + +IS AMIVDLDAHQGNG+E
Sbjct: 149 YERGWAINVGGGFHHCCGYRGGGFCVYADITLCIHFAFANLNISRAMIVDLDAHQGNGHE 208
Query: 292 KDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
+DF ++ R+FI + + +AK I R+E++ T YL +++ LE + ++F
Sbjct: 209 RDFADDDRVFIFDMYNRDIYPLDYEAKRWIDRRVEISSGTRTDSYLTRLKQELEGAFQAF 268
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PD++VYNAGTD+L DPLG L +SP+G+ RDE+VF AR+R +PIVMLTSGGY++ +A
Sbjct: 269 APDLLVYNAGTDILEGDPLGRLEVSPEGVKERDEIVFSFARQRNIPIVMLTSGGYMRSSA 328
Query: 406 RIIADSILNLADLGLI 421
+IA+SI NL LI
Sbjct: 329 GVIAESISNLHSKKLI 344
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 48/64 (75%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ AG +A RGW+IN+GGGFHH +GGGFC YADI+L + F + +IS AMIVDL
Sbjct: 140 GSVLAGKVAYERGWAINVGGGFHHCCGYRGGGFCVYADITLCIHFAFANLNISRAMIVDL 199
Query: 64 DAHQ 67
DAHQ
Sbjct: 200 DAHQ 203
>gi|345786364|ref|XP_541747.3| PREDICTED: histone deacetylase 11 [Canis lupus familiaris]
Length = 296
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 151/304 (49%), Positives = 201/304 (66%), Gaps = 38/304 (12%)
Query: 126 LEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKS 185
LEKLHPFD+ KW + ++L E K ++ ++E +E S+E LL+ HT +YL
Sbjct: 3 LEKLHPFDAGKWGKVISFLK--------EEKLLSDGMLVEAREASDEDLLVVHTRRYLNE 54
Query: 186 LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFH 245
LK + L+P+R GGT+ AG LA+ RGW+IN+GGGFH
Sbjct: 55 LK-----------------------RKVLKPLRTQTGGTIMAGKLAMERGWAINVGGGFH 91
Query: 246 HASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNGYEKDFMNETRIFIME 304
H S +GGGFCAYADI+L +K LF+ + IS A IVDLDAHQGNG+E+DFM + R++IM+
Sbjct: 92 HCSSDRGGGFCAYADITLAIKFLFERVEGISRATIVDLDAHQGNGHERDFMGDKRVYIMD 151
Query: 305 T------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDV 358
AK+AIR ++EL TED YL+K+E L+++L+ PD++VYNAGTD+
Sbjct: 152 VYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNLQKALQEHLPDVVVYNAGTDI 211
Query: 359 LLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADL 418
L D LG L+ISPQGI++RDELVF R R+VPI+M+TSGGY K+TARIIADSILNL +
Sbjct: 212 LEGDRLGGLSISPQGIVKRDELVFRVVRGRQVPILMVTSGGYQKRTARIIADSILNLYSV 271
Query: 419 GLIS 422
GLI
Sbjct: 272 GLIG 275
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A IVD
Sbjct: 69 GTIMAGKLAMERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIVD 128
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 129 LDAHQ 133
>gi|397511879|ref|XP_003826290.1| PREDICTED: histone deacetylase 11 isoform 2 [Pan paniscus]
Length = 297
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 154/305 (50%), Positives = 201/305 (65%), Gaps = 39/305 (12%)
Query: 126 LEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKS 185
LEKLHPFD+ KW + N+L E K ++ ++E +E SEE LL+ HT +YL
Sbjct: 3 LEKLHPFDAGKWGKVINFLK--------EEKLLSDSMLVEAREASEEDLLVVHTRRYLNE 54
Query: 186 LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLE-AGFLALRRGWSINIGGGF 244
LK + LRP+R GGT + AG LA+ RGW+IN+GGGF
Sbjct: 55 LK-----------------------RKVLRPLRTQTGGTHKLAGKLAVERGWAINVGGGF 91
Query: 245 HHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNGYEKDFMNETRIFIM 303
HH S +GGGFCAYADI+L +K LF+ + IS A I+DLDAHQGNG+E+DFM++ R++IM
Sbjct: 92 HHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAHQGNGHERDFMDDKRVYIM 151
Query: 304 ET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTD 357
+ AK+AIR ++EL TED YL+K+E +++SL+ PD++VYNAGTD
Sbjct: 152 DVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIKKSLQEHLPDVVVYNAGTD 211
Query: 358 VLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLAD 417
+L D LG L+ISP GI++RDELVF R RRVPI+M+TSGGY K+TARIIADSILNL
Sbjct: 212 ILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVTSGGYQKRTARIIADSILNLFG 271
Query: 418 LGLIS 422
LGLI
Sbjct: 272 LGLIG 276
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
Query: 8 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAH 66
AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+DLDAH
Sbjct: 74 AGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAH 133
Query: 67 Q 67
Q
Sbjct: 134 Q 134
>gi|324513441|gb|ADY45523.1| Histone deacetylase 11 [Ascaris suum]
Length = 365
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 156/355 (43%), Positives = 209/355 (58%), Gaps = 26/355 (7%)
Query: 79 IKRKRKVEFLKERKALEDEITSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWK 138
I RK K+ ++ E + + WPIVY YN+ FF +EKLHPFDS KW
Sbjct: 24 ISRKEKLAYVTETRLYS---------GIRADQWPIVYHSLYNISFFGIEKLHPFDSAKWG 74
Query: 139 HIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEV 198
++N L +E+ +T++ ++ E SE L + HT YL SL VA + EV
Sbjct: 75 RVYNKL--------IESGMLTEEQFVQAVEASEHDLRVVHTSCYLASLHCPCRVARLVEV 126
Query: 199 CPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAY 258
+ +P++ + K L+P RYH GG++ A LAL R W+IN+GGGFHHAS ++GGGFC Y
Sbjct: 127 AIVAFLPSFVIDKYLLKPFRYHTGGSILAARLALERNWAINLGGGFHHASRSRGGGFCVY 186
Query: 259 ADISLLVKLLFQSKSISTAMIVDLDAH---QGNGYEKDFMNETRIFIMETCITS------ 309
ADISL + LF ++ IS AMIVDLDAH QGNG+E DF + R++I +
Sbjct: 187 ADISLALNFLFLNRLISRAMIVDLDAHQVLQGNGHEHDFAGDNRVYIFDMFNYQIYPSDF 246
Query: 310 KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAI 369
AK AI + L T D YL ++ L +L F DII+YNAGTD L DPLGLL++
Sbjct: 247 VAKNAISRSVPLRSGTGDTEYLRQLSRNLSAALGEFSADIIIYNAGTDCLEGDPLGLLSL 306
Query: 370 SPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLISRP 424
+ GII+RDE+VF A++ +PIVML SGGY+ +I SILNL LIS P
Sbjct: 307 TAAGIIKRDEVVFELAQQCHIPIVMLMSGGYMPNNYDVITRSILNLHQKKLISLP 361
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 51/64 (79%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ A LAL R W+IN+GGGFHHAS ++GGGFC YADISL + LF ++ IS AMIVDL
Sbjct: 151 GSILAARLALERNWAINLGGGFHHASRSRGGGFCVYADISLALNFLFLNRLISRAMIVDL 210
Query: 64 DAHQ 67
DAHQ
Sbjct: 211 DAHQ 214
>gi|344275965|ref|XP_003409781.1| PREDICTED: histone deacetylase 11-like [Loxodonta africana]
Length = 296
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 150/304 (49%), Positives = 199/304 (65%), Gaps = 38/304 (12%)
Query: 126 LEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKS 185
LE+LHPFD+ KW + N+L E K ++ ++E +E SEE LL+ HT +YL
Sbjct: 3 LERLHPFDAGKWGKVINFLK--------EEKLLSDSLLVEAREASEEDLLVVHTRRYLNE 54
Query: 186 LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFH 245
LK + LRP+R GGT+ AG LA+ RGW+IN+GGGFH
Sbjct: 55 LK-----------------------RKVLRPLRTQTGGTIMAGKLAMERGWAINVGGGFH 91
Query: 246 HASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNGYEKDFMNETRIFIME 304
H S +GGGFCAYADI+L +K LF+ + IS A I+DLDAHQGNG+E+DFM + R++IM+
Sbjct: 92 HCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAHQGNGHERDFMGDKRVYIMD 151
Query: 305 T------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDV 358
AK+AIR ++EL TED YL+K+ ++++L+ PD++VYNAGTDV
Sbjct: 152 VYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVGRNIKKALQEHRPDVVVYNAGTDV 211
Query: 359 LLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADL 418
L D LG L+ISP+GI++RDELVF R +VPI+M+TSGGY K+TARIIADSILNL L
Sbjct: 212 LEGDRLGGLSISPEGIVKRDELVFRVVRGHQVPILMVTSGGYQKRTARIIADSILNLHGL 271
Query: 419 GLIS 422
GLI
Sbjct: 272 GLIG 275
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 82/143 (57%), Gaps = 25/143 (17%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 69 GTIMAGKLAMERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 128
Query: 63 LDAHQ-------------------FSDYYFP----SAHSIKRKRKVEFLKERKALEDEIT 99
LDAHQ ++ + +P + +I+RK ++E+ E D++
Sbjct: 129 LDAHQGNGHERDFMGDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVG 188
Query: 100 SEPQESVVT-RPWPIVYRPEYNV 121
++++ RP +VY +V
Sbjct: 189 RNIKKALQEHRPDVVVYNAGTDV 211
>gi|302814820|ref|XP_002989093.1| hypothetical protein SELMODRAFT_129097 [Selaginella moellendorffii]
gi|300143194|gb|EFJ09887.1| hypothetical protein SELMODRAFT_129097 [Selaginella moellendorffii]
Length = 316
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 147/318 (46%), Positives = 206/318 (64%), Gaps = 15/318 (4%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY YN+ F LEKLHPFDS KW + L ++ + I+EP E ++
Sbjct: 2 PVVYSAVYNIAFLGLEKLHPFDSSKWGRVCELL--------IQKGELESRRIMEPGEATK 53
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHV-GGTLEAGFL 230
E LL+ HT +YL+SLK S+ A+I EV P+ +P ++ L P R V GG++ AG +
Sbjct: 54 EDLLVVHTPEYLESLKRSYVAASILEVPPVALLPYCIIRSKVLVPFRKQVVGGSVLAGKV 113
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
A RGW+IN+GGGFHH +GGGFC YADI+L + F + +IS AMIVDLDAHQGNG+
Sbjct: 114 AYERGWAINVGGGFHHCCGYRGGGFCVYADITLCIHFAFANLNISRAMIVDLDAHQGNGH 173
Query: 291 EKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRS 344
E+DF ++ R+FI + + +AK I R+E++ T YL +++ LE + ++
Sbjct: 174 ERDFADDDRVFIFDMYNRDIYPLDYEAKRWIDRRVEISSGTRTDSYLTRLKQELEEAFQA 233
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT 404
F PD++VYNAGTD+L DPLG L +SP+G+ RDE+VF AR+R +PIVMLTSGGY++ +
Sbjct: 234 FAPDLLVYNAGTDILEGDPLGRLEVSPEGVKERDEIVFSFARQRNIPIVMLTSGGYMRSS 293
Query: 405 ARIIADSILNLADLGLIS 422
A +IA+SI NL LI
Sbjct: 294 AGVIAESISNLHSKKLID 311
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 48/64 (75%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ AG +A RGW+IN+GGGFHH +GGGFC YADI+L + F + +IS AMIVDL
Sbjct: 106 GSVLAGKVAYERGWAINVGGGFHHCCGYRGGGFCVYADITLCIHFAFANLNISRAMIVDL 165
Query: 64 DAHQ 67
DAHQ
Sbjct: 166 DAHQ 169
>gi|350591475|ref|XP_003483278.1| PREDICTED: histone deacetylase 11-like, partial [Sus scrofa]
Length = 276
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 140/280 (50%), Positives = 190/280 (67%), Gaps = 15/280 (5%)
Query: 99 TSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI 158
T++ + V WPIVY P YN+ F LEKLHPFD+ KW + ++L E K +
Sbjct: 4 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVISFL--------KEEKLL 55
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
T ++E +E S+E LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ L+P+R
Sbjct: 56 TDSMLVEAREASDEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLKPLR 115
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTA 277
GGT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A
Sbjct: 116 TQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRA 175
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCI------TSKAKEAIRCRIELAPYTEDQHYL 331
I+DLDAHQGNG+E+DFM + R++IM+ AK+AIR ++EL TED YL
Sbjct: 176 TIIDLDAHQGNGHERDFMGDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWATEDDEYL 235
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISP 371
K+E LE++L+ PD++VYNAGTDVL D LG L+ISP
Sbjct: 236 TKVERNLEKALQEHRPDVVVYNAGTDVLEGDRLGGLSISP 275
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 120 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 179
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 180 LDAHQ 184
>gi|194909322|ref|XP_001981923.1| GG12313 [Drosophila erecta]
gi|190656561|gb|EDV53793.1| GG12313 [Drosophila erecta]
Length = 332
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 154/341 (45%), Positives = 211/341 (61%), Gaps = 27/341 (7%)
Query: 90 ERKALEDEITSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIF 149
E + E+ + + +++ PIV+ Y V F LE+LHPFD+ K KHI L +
Sbjct: 11 EEQESEEVVWVKREDTRCAGKLPIVFSRNYAVRFGGLERLHPFDAAKGKHIHKLLCSELQ 70
Query: 150 NYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFV 209
+ + EP E++++QL HT YLKSL+WS NVA I+EV
Sbjct: 71 --------LDDGSFYEPTELTKDQLRRIHTRDYLKSLRWSMNVACIAEV----------- 111
Query: 210 QKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF 269
+ YLRPMR+ G++ AG LAL GW+IN+GGGFHH +GGGFC YADISLL+ LF
Sbjct: 112 PRSYLRPMRFQAAGSILAGRLALDYGWAINLGGGFHHCCSYRGGGFCPYADISLLIVRLF 171
Query: 270 QSK--SISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCIT------SKAKEAIRCRIEL 321
+ + + MIVDLDAHQGNG+E+DF N ++I++ AKE+IRC +EL
Sbjct: 172 EQEPFRVRRIMIVDLDAHQGNGHERDFNNVAAVYILDMYNAFVYPRDHVAKESIRCAVEL 231
Query: 322 APYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV 381
+TED YL +++ L +SL F PD+++YNAGTDVL DPLG L+IS +G++ RD LV
Sbjct: 232 RNHTEDAFYLRQLKRCLMQSLAEFRPDVVIYNAGTDVLEGDPLGNLSISAEGVMERDRLV 291
Query: 382 FMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLIS 422
F R +P+VML SGGYLK +A +IADSI+NL GL++
Sbjct: 292 FSTFRTLGIPVVMLLSGGYLKASAGVIADSIVNLRLQGLLN 332
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSK--SISTAMIV 61
G++ AG LAL GW+IN+GGGFHH +GGGFC YADISLL+ LF+ + + MIV
Sbjct: 125 GSILAGRLALDYGWAINLGGGFHHCCSYRGGGFCPYADISLLIVRLFEQEPFRVRRIMIV 184
Query: 62 DLDAHQ 67
DLDAHQ
Sbjct: 185 DLDAHQ 190
>gi|393906996|gb|EJD74475.1| hypothetical protein LOAG_18214 [Loa loa]
Length = 396
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 157/396 (39%), Positives = 218/396 (55%), Gaps = 56/396 (14%)
Query: 75 SAHSIKRKRKVEFLKERKALEDEITSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDS 134
S ++ R + L + L TS+ + + PIVY P YN+ F +E+ HPFDS
Sbjct: 6 STYNTDRSSIEKPLANSRQLAAVKTSKLYKEIEQGQLPIVYHPIYNISFCGIERCHPFDS 65
Query: 135 KKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAA 194
+KW ++ L +++ + I P E S + L + H+ YL SL+ VA
Sbjct: 66 RKWGRVYETL--------LQSGMFEERQTIRPSEASMDDLRVVHSSTYLSSLRCPCYVAK 117
Query: 195 ISEVCPLVAVPNYFVQKCYLRPMRYHV--------------------------------- 221
+ E+ P+ +P + K L+P+RYH
Sbjct: 118 MVEITPVALLPPCIINKVLLKPLRYHTDKLRTDCVKCIGAYSLKSALCCNAALFEVAQVD 177
Query: 222 ---------GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSK 272
GGT+ A LAL GW+INIGGGFHHAS +KGGGFC YADI+L + LF S+
Sbjct: 178 KCIFLSSFEGGTVLAAKLALTSGWAINIGGGFHHASRSKGGGFCIYADITLALTFLFSSQ 237
Query: 273 SISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITS------KAKEAIRCRIELAPYTE 326
IS A+IVDLDAHQGNG+E DF ++R++I++ + +A+ AI+ + L T+
Sbjct: 238 LISKAVIVDLDAHQGNGHENDFSGDSRVYILDMFNSRIYPYDLRARRAIKRSVHLHVGTQ 297
Query: 327 DQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKAR 386
D YL + + LE L F PDIIVYNAGTD L DPLGLL+IS +GI +RDE+VF AR
Sbjct: 298 DAEYLSLLSSNLEDVLSEFRPDIIVYNAGTDCLRGDPLGLLSISSKGIRKRDEIVFKMAR 357
Query: 387 ERRVPIVMLTSGGYLKQTARIIADSILNLADLGLIS 422
+R +P+VML SGGY+ T +IA SILNL D L++
Sbjct: 358 DRHIPVVMLLSGGYMPHTHEVIAKSILNLYDKNLLN 393
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 52/66 (78%)
Query: 2 EYGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
E GT+ A LAL GW+INIGGGFHHAS +KGGGFC YADI+L + LF S+ IS A+IV
Sbjct: 186 EGGTVLAAKLALTSGWAINIGGGFHHASRSKGGGFCIYADITLALTFLFSSQLISKAVIV 245
Query: 62 DLDAHQ 67
DLDAHQ
Sbjct: 246 DLDAHQ 251
>gi|335299481|ref|XP_003132448.2| PREDICTED: histone deacetylase 11-like [Sus scrofa]
Length = 296
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 151/304 (49%), Positives = 196/304 (64%), Gaps = 38/304 (12%)
Query: 126 LEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKS 185
LEKLHPFD+ KW + ++L E K +T ++E +E S+E LL+ HT +YL
Sbjct: 3 LEKLHPFDAGKWGKVISFLK--------EEKLLTDSMLVEAREASDEDLLVVHTRRYLNE 54
Query: 186 LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFH 245
LK V + P GG++ AG LA+ RGW+IN+GGGFH
Sbjct: 55 LK----VQGLGAASP-------------------EKGGSILAGKLAVERGWAINVGGGFH 91
Query: 246 HASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNGYEKDFMNETRIFIME 304
H S +GGGFCAYADI+L +K LF+ + IS A I+DLDAHQGNG+E+DFM + R++IM+
Sbjct: 92 HCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAHQGNGHERDFMGDKRVYIMD 151
Query: 305 T------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDV 358
AK+AIR ++EL TED YL K+E LE++L+ PD++VYNAGTDV
Sbjct: 152 VYNRHIYPGDRFAKQAIRRKVELEWATEDDEYLTKVERNLEKALQEHRPDVVVYNAGTDV 211
Query: 359 LLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADL 418
L D LG L+ISPQGI++RDELVF R +VPI+M+TSGGY K+TARIIADSILNL L
Sbjct: 212 LEGDRLGGLSISPQGIVKRDELVFRMVRSLQVPILMVTSGGYQKRTARIIADSILNLYGL 271
Query: 419 GLIS 422
GLI
Sbjct: 272 GLIG 275
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
G++ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 69 GSILAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 128
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 129 LDAHQ 133
>gi|198414517|ref|XP_002121327.1| PREDICTED: similar to histone deacetylase 11, partial [Ciona
intestinalis]
Length = 418
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 144/293 (49%), Positives = 197/293 (67%), Gaps = 16/293 (5%)
Query: 146 KHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLK---------WSFNVAAIS 196
K+I ++ + K + + +P E +E LLIAH+++YL SLK WS NVA I+
Sbjct: 125 KNIVWFITDDKLLQNNQHFQPLEPTERDLLIAHSKEYLSSLKEKSVAGIRKWSANVARIT 184
Query: 197 EVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFC 256
EV P+ +PN+ VQ+ L P+R GG++ AG LA+ RGW+INIGGGFHH S +GGGFC
Sbjct: 185 EVPPVALLPNFIVQRKVLLPLRLQTGGSVLAGKLAIERGWAINIGGGFHHCSGDRGGGFC 244
Query: 257 AYADISLLVKLLFQS-KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITS------ 309
AYADI+LL+K +F +I M+VDLDAHQGNGY +DFM + R+F+M+ +
Sbjct: 245 AYADITLLIKFVFAKFDAIKRVMVVDLDAHQGNGYARDFMFDDRVFVMDVYNRNIYPHDG 304
Query: 310 KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAI 369
AK I+ ++EL +DQ YL +++ L S+ F P +IVYNAGTD+L D LG L I
Sbjct: 305 YAKRGIKRKVELTSGVDDQTYLPLVKSHLTESIGEFNPQLIVYNAGTDILQGDQLGRLNI 364
Query: 370 SPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLIS 422
S +GI++RDE+VF A+ R +PIVMLTSGGY + TARIIA+SIL+L + GLI
Sbjct: 365 SAEGIVKRDEIVFALAKGRGIPIVMLTSGGYQRTTARIIANSILSLRNNGLID 417
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
G++ AG LA+ RGW+INIGGGFHH S +GGGFCAYADI+LL+K +F +I M+VD
Sbjct: 211 GSVLAGKLAIERGWAINIGGGFHHCSGDRGGGFCAYADITLLIKFVFAKFDAIKRVMVVD 270
Query: 63 LDAHQFSDY 71
LDAHQ + Y
Sbjct: 271 LDAHQGNGY 279
>gi|255550810|ref|XP_002516453.1| histone deacetylase, putative [Ricinus communis]
gi|223544273|gb|EEF45794.1| histone deacetylase, putative [Ricinus communis]
Length = 342
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 142/293 (48%), Positives = 187/293 (63%), Gaps = 14/293 (4%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PI+Y P Y++ F +EKLHPFDS KW + +L V + +++I+EP E S+
Sbjct: 50 PIIYSPAYDISFLGIEKLHPFDSSKWGRVCRFL--------VTEGVLDKNSIVEPLEASK 101
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ LL+ H E YL SL+ S NVA I EV P+ PN VQ+ L P R VGGT+ A LA
Sbjct: 102 DDLLVVHLESYLSSLRSSANVATIIEVPPVSLFPNCLVQQKVLFPFRKQVGGTILAAKLA 161
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
RGW+IN+GGGFHH S KGGGFCAYADISL + F IS MI+DLDAHQGNG+E
Sbjct: 162 KERGWAINVGGGFHHCSSGKGGGFCAYADISLCIHFAFVRLRISRVMIIDLDAHQGNGHE 221
Query: 292 KDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
DF ++ RI+I++ + +A+ I ++E+A T YL +++ LE + + F
Sbjct: 222 MDFYDDNRIYILDMYNPGIYPLDYEARNYIDQKVEIASGTRTDEYLRELDEALEVADQKF 281
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSG 398
P+++VYNAGTD+L DPLG L ISP GI RDE VF ARE+ P+VMLTSG
Sbjct: 282 DPELVVYNAGTDILDGDPLGRLKISPDGITARDEKVFRFAREKNAPLVMLTSG 334
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 46/64 (71%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LA RGW+IN+GGGFHH S KGGGFCAYADISL + F IS MI+DL
Sbjct: 153 GTILAAKLAKERGWAINVGGGFHHCSSGKGGGFCAYADISLCIHFAFVRLRISRVMIIDL 212
Query: 64 DAHQ 67
DAHQ
Sbjct: 213 DAHQ 216
>gi|402585803|gb|EJW79742.1| HDAC11 protein [Wuchereria bancrofti]
Length = 339
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 145/316 (45%), Positives = 193/316 (61%), Gaps = 29/316 (9%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY P YN+ F +E+ HPFDS+KW ++ L +++ ++ + P E S
Sbjct: 43 PIVYHPVYNISFCGIERCHPFDSRKWGRVYETL--------LQSGMFEENQTVRPLEASM 94
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ L + H+ YL SL VA + EV P+ +P C GT+ A LA
Sbjct: 95 DDLRVVHSSTYLSSLCCPCYVAKMVEVTPVALIP-----PC----------GTILAAKLA 139
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L GW+INIGGGFHHAS +KGGGFC YADI+L + LF ++ IS AMIVDLDAHQGNG+E
Sbjct: 140 LTSGWAINIGGGFHHASRSKGGGFCIYADITLALTFLFSNQLISKAMIVDLDAHQGNGHE 199
Query: 292 KDFMNETRIFIMETCITS------KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
DF + R++I++ + +A+ AIR + L T+D YL + LE L F
Sbjct: 200 NDFSGDNRVYILDMFNSRIYPHDLRARRAIRRSVHLRVGTQDSEYLSLLSNNLEDVLNEF 259
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PDIIVYNAGTD L DPLGLL+IS +GI +RDE+VF AR+R +P+VML SGGY+ T
Sbjct: 260 QPDIIVYNAGTDCLQGDPLGLLSISSKGIRKRDEIVFKMARDRHIPVVMLLSGGYMPNTH 319
Query: 406 RIIADSILNLADLGLI 421
+IA SILNL + L+
Sbjct: 320 EVIAKSILNLYNKNLL 335
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 51/64 (79%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LAL GW+INIGGGFHHAS +KGGGFC YADI+L + LF ++ IS AMIVDL
Sbjct: 131 GTILAAKLALTSGWAINIGGGFHHASRSKGGGFCIYADITLALTFLFSNQLISKAMIVDL 190
Query: 64 DAHQ 67
DAHQ
Sbjct: 191 DAHQ 194
>gi|170579015|ref|XP_001894638.1| histone deacetylase 11 [Brugia malayi]
gi|158598650|gb|EDP36504.1| histone deacetylase 11, putative [Brugia malayi]
Length = 380
Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 153/343 (44%), Positives = 200/343 (58%), Gaps = 41/343 (11%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY P YN+ F +E+ HPFDS+KW ++ L +++ ++ I P E S
Sbjct: 42 PIVYHPVYNISFCGIERCHPFDSRKWGRVYETL--------LQSGMFEENQTIRPLEASM 93
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG--------- 222
+ L + H+ YL SL VA + EV P+ +P + K L+P RYH
Sbjct: 94 DDLRVVHSSTYLSSLCCPCYVAKMVEVTPVALIPPCIINKVLLKPFRYHTDKFDEHTSIY 153
Query: 223 ------------------GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLL 264
GT+ A LAL GW+INIGGGFHHAS +KGGGFC YADI+L
Sbjct: 154 VFIIVHDYANCQLVFNACGTILAAKLALTSGWAINIGGGFHHASRSKGGGFCIYADITLA 213
Query: 265 VKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITS------KAKEAIRCR 318
+ LF ++ IS AMIVDLDAHQGNG+E DF ++R++I++ +A+ AIR
Sbjct: 214 LTFLFSNQLISKAMIVDLDAHQGNGHENDFSGDSRVYILDMFNXRIYPHDLRARRAIRRS 273
Query: 319 IELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRD 378
I L T+D YL + LE L F PDIIVYNAGTD L DPLGLL+IS +GI +RD
Sbjct: 274 IHLXVGTQDSEYLSLLSNNLEDVLNEFQPDIIVYNAGTDCLQGDPLGLLSISSKGIRKRD 333
Query: 379 ELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLI 421
E+VF AR+R +P+VML SGGY+ T +IA SILNL D L+
Sbjct: 334 EIVFKMARDRHIPVVMLLSGGYMPNTHEVIAKSILNLYDKNLL 376
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 51/64 (79%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LAL GW+INIGGGFHHAS +KGGGFC YADI+L + LF ++ IS AMIVDL
Sbjct: 172 GTILAAKLALTSGWAINIGGGFHHASRSKGGGFCIYADITLALTFLFSNQLISKAMIVDL 231
Query: 64 DAHQ 67
DAHQ
Sbjct: 232 DAHQ 235
>gi|5107816|gb|AAD40129.1|AF149413_10 contains similarity to histone deacetylases; Pfam PF00850,
Score=13.3, E=5e-10, N=1 [Arabidopsis thaliana]
Length = 316
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 146/318 (45%), Positives = 193/318 (60%), Gaps = 37/318 (11%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
I+Y Y++ F +EKLHPFDS KW + +L V F+ + I+EP E S+
Sbjct: 29 IIYSSSYDISFMGIEKLHPFDSSKWGRVCKFL--------VSDGFLEEKAIVEPLEASKI 80
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
LL+ H+E YL SLK S VA I+EV GGT+ A LA
Sbjct: 81 DLLVVHSENYLNSLKSSATVARITEV-----------------------GGTILAAKLAT 117
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
RGW+INIGGGFHH + +GGGFCA+ADISL + F IS MI+DLDAHQGNG+E
Sbjct: 118 ERGWAINIGGGFHHCTAERGGGFCAFADISLCIHFAFLRLRISRVMIIDLDAHQGNGHET 177
Query: 293 DFMNE--TRIFIMETCI---TSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
D ++ + + CI +A+ I ++E+ T YL K++ LE + R+F P
Sbjct: 178 DLGDDILSMLAFEVRCIFLQDYRARRFIDQKVEVMSGTTTDEYLRKLDEALEVASRNFQP 237
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
++++YNAGTD+L DPLGLL ISP GI RDE VF ARE+ +P+VMLTSGGY+K +AR+
Sbjct: 238 ELVIYNAGTDILDGDPLGLLKISPDGITSRDEKVFRFAREKNIPLVMLTSGGYMKSSARV 297
Query: 408 IADSILNLADLGLI-SRP 424
IADSI NL+ GLI +RP
Sbjct: 298 IADSIENLSRQGLIQTRP 315
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 46/64 (71%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LA RGW+INIGGGFHH + +GGGFCA+ADISL + F IS MI+DL
Sbjct: 108 GTILAAKLATERGWAINIGGGFHHCTAERGGGFCAFADISLCIHFAFLRLRISRVMIIDL 167
Query: 64 DAHQ 67
DAHQ
Sbjct: 168 DAHQ 171
>gi|340381672|ref|XP_003389345.1| PREDICTED: histone deacetylase 11-like, partial [Amphimedon
queenslandica]
Length = 252
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 131/234 (55%), Positives = 162/234 (69%), Gaps = 7/234 (2%)
Query: 189 SFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHAS 248
S NVA + EV PL VPNY VQ LRP RY GGT+ AG LA+ RGW+INIGGGFHH
Sbjct: 2 STNVAMVVEVPPLAIVPNYIVQNKMLRPFRYQTGGTILAGKLAMERGWAINIGGGFHHCC 61
Query: 249 ETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET-- 305
+GGGFCAYADI+L ++ LFQ + MIVD DAHQGNG+E+DFM++ +++IM+
Sbjct: 62 SGEGGGFCAYADITLSIRFLFQRVPGVQKVMIVDFDAHQGNGHERDFMDDDKVYIMDMYN 121
Query: 306 ----CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLN 361
KAK AI +IEL +T D+ YL I L +L F PDI+VYNAGTDVL+
Sbjct: 122 RWIYPNDIKAKSAINMKIELDVHTGDETYLRHIRRKLPEALDEFHPDIVVYNAGTDVLMG 181
Query: 362 DPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNL 415
DPLG+L I+ QG+I RDELVF R R +PI M+TSGGY + A++IADSILNL
Sbjct: 182 DPLGILDITDQGVILRDELVFQTVRNRNIPIFMVTSGGYQRNNAQVIADSILNL 235
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+INIGGGFHH +GGGFCAYADI+L ++ LFQ + MIVD
Sbjct: 36 GTILAGKLAMERGWAINIGGGFHHCCSGEGGGFCAYADITLSIRFLFQRVPGVQKVMIVD 95
Query: 63 LDAHQ 67
DAHQ
Sbjct: 96 FDAHQ 100
>gi|30690100|ref|NP_851078.1| histone deacetylase 2 [Arabidopsis thaliana]
gi|332006133|gb|AED93516.1| histone deacetylase 2 [Arabidopsis thaliana]
Length = 359
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 140/319 (43%), Positives = 189/319 (59%), Gaps = 43/319 (13%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
I+Y Y++ F +EKLHPFDS KW + +L V F+ + I+EP E S+
Sbjct: 76 IIYSSSYDISFMGIEKLHPFDSSKWGRVCKFL--------VSDGFLEEKAIVEPLEASKI 127
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
LL+ H+E YL SLK S VA I+EV P+ PN+ VQ+ L P R VGGT+ A LA
Sbjct: 128 DLLVVHSENYLNSLKSSATVARITEVAPVAFFPNFLVQQKVLYPFRKQVGGTILAAKLAT 187
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
RGW+INIGGGFHH + +G DLDAHQGNG+E
Sbjct: 188 ERGWAINIGGGFHHCTAERG----------------------------DLDAHQGNGHET 219
Query: 293 DFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
D ++ R++I++ +A+ I ++E+ T YL K++ LE + R+F
Sbjct: 220 DLGDDNRVYILDMYNPEIYPFDYRARRFIDQKVEVMSGTTTDEYLRKLDEALEVASRNFQ 279
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
P++++YNAGTD+L DPLGLL ISP GI RDE VF ARE+ +P+VMLTSGGY+K +AR
Sbjct: 280 PELVIYNAGTDILDGDPLGLLKISPDGITSRDEKVFRFAREKNIPLVMLTSGGYMKSSAR 339
Query: 407 IIADSILNLADLGLI-SRP 424
+IADSI NL+ GLI +RP
Sbjct: 340 VIADSIENLSRQGLIQTRP 358
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKG 33
GT+ A LA RGW+INIGGGFHH + +G
Sbjct: 178 GTILAAKLATERGWAINIGGGFHHCTAERG 207
>gi|357614603|gb|EHJ69167.1| putative histone deacetylase 11-like protein [Danaus plexippus]
Length = 242
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 131/234 (55%), Positives = 166/234 (70%), Gaps = 6/234 (2%)
Query: 195 ISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGG 254
I+EV + VPN+ VQK YL+PMR GGT+ AG LAL RGW+INIGGGFHH S KGGG
Sbjct: 2 IAEVPVIACVPNFLVQKAYLKPMRLQTGGTILAGKLALERGWAINIGGGFHHCSAGKGGG 61
Query: 255 FCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET------CIT 308
FCAYADI+LL+K L + + MIVDLDAHQGNGY+ DF+ ++IM+
Sbjct: 62 FCAYADITLLIKNLVLHRGVQNTMIVDLDAHQGNGYQHDFLGIPEVYIMDMYNRHIYPRD 121
Query: 309 SKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLA 368
+AK AIR +IEL ED Y+ K+ L +L+ F PDI+VYNAGTD+L +DPLG +
Sbjct: 122 EEAKRAIRRKIELGNKVEDLEYMIKLRKNLREALKEFKPDILVYNAGTDILDSDPLGHMR 181
Query: 369 ISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLIS 422
IS GII+RDE VF +E+ +P+VMLTSGGYL++TA+IIADSI+NL + GLI
Sbjct: 182 ISDVGIIKRDEFVFEICKEQDIPVVMLTSGGYLRRTAKIIADSIMNLKNKGLIG 235
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 52/68 (76%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ AG LAL RGW+INIGGGFHH S KGGGFCAYADI+LL+K L + + MIVDL
Sbjct: 30 GTILAGKLALERGWAINIGGGFHHCSAGKGGGFCAYADITLLIKNLVLHRGVQNTMIVDL 89
Query: 64 DAHQFSDY 71
DAHQ + Y
Sbjct: 90 DAHQGNGY 97
>gi|218780702|ref|YP_002432020.1| histone deacetylase superfamily protein [Desulfatibacillum
alkenivorans AK-01]
gi|218762086|gb|ACL04552.1| Putative sirtuin-type regulators for CoA ligase (histone
deacetylase superfamily) [Desulfatibacillum alkenivorans
AK-01]
Length = 355
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 138/312 (44%), Positives = 196/312 (62%), Gaps = 14/312 (4%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P PIVY YN+ F ++KLHPFDS+K+ ++ YL K++ ++ + I EP+E+
Sbjct: 31 PLPIVYSKHYNITLFGIQKLHPFDSEKYGRVYKYLEKNVG--------LSPERIFEPEEI 82
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
SE LL H+ +YL SLK S VA I+E+ L +P + + K L+PMRY GGT+ A
Sbjct: 83 SELDLLRVHSREYLDSLKKSSVVAEIAEMGALKLMPGFLLDKKILKPMRYATGGTVLACR 142
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL+ GWS+N+ GG+HHA +G GFC YADI + +L++ M+VDLD HQGNG
Sbjct: 143 LALQYGWSVNLSGGYHHAKADQGEGFCFYADIPVAAHVLWEQNPAMKIMVVDLDVHQGNG 202
Query: 290 YEKDFMNETRIFIMETC---ITSKAKEA---IRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+E F ++ R+FI + I + KEA I + +A TED+ YL ++ LE ++
Sbjct: 203 HEAVFKDDPRVFIFDMYNAEIYPRDKEAAEYIDFNLPVAYGTEDEEYLALLKKNLEPAII 262
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD+I+YNAGTD+ +DPLG+L I+ GII RDE VF A + VP+ M+ SGGY K+
Sbjct: 263 QSNPDLIIYNAGTDIYKDDPLGVLNITQDGIIDRDEQVFRTAGKLNVPVAMVLSGGYTKE 322
Query: 404 TARIIADSILNL 415
+A IIA S+ NL
Sbjct: 323 SAGIIAQSMENL 334
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LAL+ GWS+N+ GG+HHA +G GFC YADI + +L++ M+VDL
Sbjct: 136 GTVLACRLALQYGWSVNLSGGYHHAKADQGEGFCFYADIPVAAHVLWEQNPAMKIMVVDL 195
Query: 64 DAHQ 67
D HQ
Sbjct: 196 DVHQ 199
>gi|193207430|ref|NP_505699.3| Protein HDA-11 [Caenorhabditis elegans]
gi|157888565|emb|CAA94910.3| Protein HDA-11 [Caenorhabditis elegans]
Length = 334
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 137/323 (42%), Positives = 193/323 (59%), Gaps = 20/323 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY EYNV F +E LHPFDS KW+ + +L E IT + ++EP +
Sbjct: 18 PIVYHSEYNVTAFGIEHLHPFDSSKWRRVITHLK--------EMNLITDETLVEPNLPTF 69
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E+L H KYLKS++ A I E+ + +P ++ L P+R GGT+ A LA
Sbjct: 70 EELTRVHDRKYLKSVRNPIKAAQIVEIPFVGCLPPCIIESKLLHPLRLQAGGTVLAANLA 129
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L+ GW+IN+GGGFHHAS + GGGFC YADI++ + LF K+I+ A++VDLDAHQGNG+
Sbjct: 130 LKHGWAINVGGGFHHASHSGGGGFCFYADITMAIFDLFDKKAIANAIVVDLDAHQGNGHA 189
Query: 292 KDFMNETRIFIMETCI------TSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSL--- 342
+DF + +F+ + +A++ I + + +T D YL ++ L + L
Sbjct: 190 RDFADNPNVFVFDVFNPYVYPHDREARQFINRAVHVNGHTTDTSYLSELRKQLAQCLIDR 249
Query: 343 -RSFCP--DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGG 399
++ P D I++NAGTD LL DPLG + +SPQ II RDE+VF A+ + +PI M+TSGG
Sbjct: 250 EKTTPPGFDFIMFNAGTDCLLGDPLGAMKLSPQCIIARDEVVFNLAKSKGIPICMVTSGG 309
Query: 400 YLKQTARIIADSILNLADLGLIS 422
Y K A +IA SI NL LIS
Sbjct: 310 YQKDNALLIAKSIENLQSKNLIS 332
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 51/64 (79%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LAL+ GW+IN+GGGFHHAS + GGGFC YADI++ + LF K+I+ A++VDL
Sbjct: 121 GTVLAANLALKHGWAINVGGGFHHASHSGGGGFCFYADITMAIFDLFDKKAIANAIVVDL 180
Query: 64 DAHQ 67
DAHQ
Sbjct: 181 DAHQ 184
>gi|308478506|ref|XP_003101464.1| CRE-HDAC-11 protein [Caenorhabditis remanei]
gi|308263110|gb|EFP07063.1| CRE-HDAC-11 protein [Caenorhabditis remanei]
Length = 336
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 138/328 (42%), Positives = 193/328 (58%), Gaps = 22/328 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY EYNV F +E LHPFD+ KW+ + YL E IT ++EP +
Sbjct: 18 PIVYHSEYNVSAFGIEHLHPFDTSKWRRVICYLK--------EMNLITDSTLVEPNLPTF 69
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVA-VPNYFVQKCYLRPMRYHVGGTLEAGFL 230
E+L+ H KYLKS++ A I E+ PLV +P ++ L P+R GG++ A L
Sbjct: 70 EELVRVHDRKYLKSVRNPLKAAQIVEI-PLVGCLPPCIIENKLLHPLRLQAGGSVLAANL 128
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL+ GW+IN+GGGFHHAS + GGGFC YADI++ + LF K+IS A++VDLDAHQGNG+
Sbjct: 129 ALKYGWAINVGGGFHHASHSDGGGFCFYADITMAICDLFDKKAISQAIVVDLDAHQGNGH 188
Query: 291 EKDFMNETRIFIMETCITS------KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRS 344
+DF + +F+ + + +A++ I + + +T D Y+ ++ L + +
Sbjct: 189 ARDFADNKDVFVFDVFNPNVYPHDREARQFINKAVHVDGHTTDTSYISELRKQLTQCIDD 248
Query: 345 ---FCP---DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSG 398
P D I++NAGTD L DPLG + +SPQ II RDE+VF A+ + +PI MLTSG
Sbjct: 249 RERLNPSGFDFIMFNAGTDCLFGDPLGAMKLSPQCIIARDEVVFKLAKSKGIPICMLTSG 308
Query: 399 GYLKQTARIIADSILNLADLGLISRPYN 426
GY K A +IA SI NL LI N
Sbjct: 309 GYQKDNALLIAKSIENLNSKNLIDLSIN 336
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 51/64 (79%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ A LAL+ GW+IN+GGGFHHAS + GGGFC YADI++ + LF K+IS A++VDL
Sbjct: 121 GSVLAANLALKYGWAINVGGGFHHASHSDGGGFCFYADITMAICDLFDKKAISQAIVVDL 180
Query: 64 DAHQ 67
DAHQ
Sbjct: 181 DAHQ 184
>gi|339249801|ref|XP_003373888.1| histone deacetylase 2 [Trichinella spiralis]
gi|316969917|gb|EFV53946.1| histone deacetylase 2 [Trichinella spiralis]
Length = 359
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 130/301 (43%), Positives = 183/301 (60%), Gaps = 17/301 (5%)
Query: 114 VYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQ 173
V+ P Y++ FF +EKLHPFD+ KW ++N L V+ +I + +I P+E +
Sbjct: 29 VFDPIYDIRFFGIEKLHPFDAGKWGRVYNKL--------VKRGYINEQHICRPREAQYDD 80
Query: 174 LLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALR 233
LLI H++ YL +L W+ +A I EV L+ P + + L+ RY GGT+ A LA+
Sbjct: 81 LLIVHSKSYLSTLHWNVLIARIMEVPLLIFFPACVIDRKVLKSFRYQTGGTVLAVRLAIE 140
Query: 234 RGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKD 293
G ++N+GGGFHH S GGGFC YADI+L +K LF + + MIVDLDAHQGNG+E+D
Sbjct: 141 CGAAVNLGGGFHHCSSKSGGGFCPYADITLAIKFLFAQRLVEKVMIVDLDAHQGNGHERD 200
Query: 294 FMNETR---IFIMETCI----TSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
F+ T I M C KAK+AIR +E+ T DQ Y ++ L+ ++ F
Sbjct: 201 FLTSTDNVYILDMYNCDIYPRDVKAKKAIRKAVEIKSQTSDQRYFSLLKKALDEAVLEFQ 260
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERR--VPIVMLTSGGYLKQT 404
P +++YNAGTD L NDPLG L +SP I++RDEL+F R+ VPI M+ SGGY + +
Sbjct: 261 PQLVLYNAGTDSLTNDPLGNLDLSPTAILQRDELIFKTFRKSNPAVPIAMVFSGGYQRNS 320
Query: 405 A 405
A
Sbjct: 321 A 321
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 45/64 (70%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LA+ G ++N+GGGFHH S GGGFC YADI+L +K LF + + MIVDL
Sbjct: 130 GTVLAVRLAIECGAAVNLGGGFHHCSSKSGGGFCPYADITLAIKFLFAQRLVEKVMIVDL 189
Query: 64 DAHQ 67
DAHQ
Sbjct: 190 DAHQ 193
>gi|307106657|gb|EFN54902.1| hypothetical protein CHLNCDRAFT_23994, partial [Chlorella
variabilis]
Length = 326
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 132/320 (41%), Positives = 193/320 (60%), Gaps = 24/320 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P YN+ F+ +E+LHPFDSKK++H+ + L + + ++ E +
Sbjct: 1 PVLYSPAYNISFYGVERLHPFDSKKFQHVLSILER--------GGVLQVGQLVRAHEATH 52
Query: 172 EQLLIAHTEKYLKSLKWS-FNVAA----ISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLE 226
E L HTE YL L S F VA ++E+ PL +P + +++ LRPM GGT+
Sbjct: 53 EILQEVHTEAYLNKLNTSSFMVAQASRWVTELVPLAFLPPFLLRRKVLRPMATMAGGTMM 112
Query: 227 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKS--ISTAMIVDLDA 284
A LA+ RGW+IN+GGG HHAS +GGG+C YADI L ++ L + + M+VDLD
Sbjct: 113 AAALAMERGWAINLGGGMHHASHDQGGGWCPYADIHLAMRRLRAASGGGVRRVMVVDLDV 172
Query: 285 HQGNGYEK---DFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIE 335
HQGNG E+ F E FI++ ++AK+AI + EL P T D YLE +
Sbjct: 173 HQGNGVERCKQHFGEEGETFIVDVYNRRAYPWDAEAKQAIDVQRELLPGTGDGEYLEAVV 232
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
+ L ++ F PD+++YNAGTD+L DPLGLL++S +G++RRD++V+ A E VPIV +
Sbjct: 233 SALRQAFSEFQPDLLIYNAGTDILEGDPLGLLSVSAEGVVRRDQMVWQAALEHSVPIVQV 292
Query: 396 TSGGYLKQTARIIADSILNL 415
SGGY +++ IA SI NL
Sbjct: 293 LSGGYTRRSTPCIASSIQNL 312
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 1 MEYGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSK--SISTA 58
M GT+ A LA+ RGW+IN+GGG HHAS +GGG+C YADI L ++ L + +
Sbjct: 106 MAGGTMMAAALAMERGWAINLGGGMHHASHDQGGGWCPYADIHLAMRRLRAASGGGVRRV 165
Query: 59 MIVDLDAHQ 67
M+VDLD HQ
Sbjct: 166 MVVDLDVHQ 174
>gi|340381662|ref|XP_003389340.1| PREDICTED: histone deacetylase 11-like, partial [Amphimedon
queenslandica]
Length = 270
Score = 253 bits (647), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 126/252 (50%), Positives = 166/252 (65%), Gaps = 16/252 (6%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYL-WKHIFNYLVEAKFITQDNIIEPQEV 169
WPI+Y P+Y++ F+KLE +HPFDS KWK ++ L K++ L ++I++P E
Sbjct: 27 WPILYSPDYDISFWKLETIHPFDSTKWKRVYQLLNEKNMLKGL--------EDIVQPNEA 78
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
S LL+ HT++YL+SLK S NVA + EV PL VPNY VQ LRP RY GGT+ AG
Sbjct: 79 SVSDLLVVHTQEYLESLKSSTNVAMVVEVPPLAIVPNYIVQNKMLRPFRYQTGGTILAGK 138
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGN 288
LA+ RGW+INIGGGFHH +GGGFCAYADI+L ++ LFQ + MIVD DAHQGN
Sbjct: 139 LAMERGWAINIGGGFHHCCSGEGGGFCAYADITLSIRFLFQRVPDVKKVMIVDFDAHQGN 198
Query: 289 GYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSL 342
G+E+DFM++ +++IM+ KAK AI +IEL +T D+ YL I L +L
Sbjct: 199 GHERDFMDDDKVYIMDMYNRWIYPNDIKAKSAINMKIELDVHTGDETYLRHIRRKLPEAL 258
Query: 343 RSFCPDIIVYNA 354
F PDI+VYNA
Sbjct: 259 DEFHPDIVVYNA 270
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+INIGGGFHH +GGGFCAYADI+L ++ LFQ + MIVD
Sbjct: 132 GTILAGKLAMERGWAINIGGGFHHCCSGEGGGFCAYADITLSIRFLFQRVPDVKKVMIVD 191
Query: 63 LDAHQ 67
DAHQ
Sbjct: 192 FDAHQ 196
>gi|268558276|ref|XP_002637128.1| Hypothetical protein CBG09630 [Caenorhabditis briggsae]
Length = 326
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 138/323 (42%), Positives = 187/323 (57%), Gaps = 30/323 (9%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY EYNV F +E LHPFDS KWK + +L + IT +EP +
Sbjct: 18 PIVYHSEYNVSAFGIEHLHPFDSSKWKRVIAHLK--------DMNLITDATTVEPSLPTF 69
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E+L H KYLKS++ A I E+ PLV L P GG++ A LA
Sbjct: 70 EELTRVHDRKYLKSVRNPLKAAQIVEI-PLVGC---------LPPCVIETGGSVLAANLA 119
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L+ GW+IN+GGGFHHAS + GGGFC YADI++ + LF K+I+ A++VD+DAHQGNG+
Sbjct: 120 LKHGWAINVGGGFHHASYSDGGGFCFYADITMAICDLFDKKAITNAIVVDVDAHQGNGHA 179
Query: 292 KDFMNETRIFIMETCI------TSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSL--- 342
+DF N +F+ + +A++ I + + +T D Y+ ++ L + L
Sbjct: 180 RDFANNENVFVFDVFNPYVYPHDREARQFINKAVHVNSHTTDTSYISELRKQLTQCLENR 239
Query: 343 RSFCP---DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGG 399
++ P D I+YNAGTD L DPLG + +SPQ II RDE+VF ARE+ +PI MLTSGG
Sbjct: 240 QNLTPPGFDFILYNAGTDCLFGDPLGAMNLSPQCIISRDEVVFKLAREKGIPICMLTSGG 299
Query: 400 YLKQTARIIADSILNLADLGLIS 422
Y K A +IA SI NL LI+
Sbjct: 300 YQKNNAHLIAKSIENLHSKNLIN 322
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 51/64 (79%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ A LAL+ GW+IN+GGGFHHAS + GGGFC YADI++ + LF K+I+ A++VD+
Sbjct: 111 GSVLAANLALKHGWAINVGGGFHHASYSDGGGFCFYADITMAICDLFDKKAITNAIVVDV 170
Query: 64 DAHQ 67
DAHQ
Sbjct: 171 DAHQ 174
>gi|312091972|ref|XP_003147172.1| histone deacetylase 11 [Loa loa]
Length = 317
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 134/307 (43%), Positives = 178/307 (57%), Gaps = 48/307 (15%)
Query: 164 IEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHV-- 221
I P E S + L + H+ YL SL+ VA + E+ P+ +P + K L+P+RYH
Sbjct: 8 IRPSEASMDDLRVVHSSTYLSSLRCPCYVAKMVEITPVALLPPCIINKVLLKPLRYHTDK 67
Query: 222 ----------------------------------------GGTLEAGFLALRRGWSINIG 241
GGT+ A LAL GW+INIG
Sbjct: 68 LRTDCVKCIGAYSLKSALCCNAALFEVAQVDKCIFLSSFEGGTVLAAKLALTSGWAINIG 127
Query: 242 GGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIF 301
GGFHHAS +KGGGFC YADI+L + LF S+ IS A+IVDLDAHQGNG+E DF ++R++
Sbjct: 128 GGFHHASRSKGGGFCIYADITLALTFLFSSQLISKAVIVDLDAHQGNGHENDFSGDSRVY 187
Query: 302 IMETCITS------KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAG 355
I++ + +A+ AI+ + L T+D YL + + LE L F PDIIVYNAG
Sbjct: 188 ILDMFNSRIYPYDLRARRAIKRSVHLHVGTQDAEYLSLLSSNLEDVLSEFRPDIIVYNAG 247
Query: 356 TDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNL 415
TD L DPLGLL+IS +GI +RDE+VF AR+R +P+VML SGGY+ T +IA SILNL
Sbjct: 248 TDCLRGDPLGLLSISSKGIRKRDEIVFKMARDRHIPVVMLLSGGYMPHTHEVIAKSILNL 307
Query: 416 ADLGLIS 422
D L++
Sbjct: 308 YDKNLLN 314
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 52/66 (78%)
Query: 2 EYGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
E GT+ A LAL GW+INIGGGFHHAS +KGGGFC YADI+L + LF S+ IS A+IV
Sbjct: 107 EGGTVLAAKLALTSGWAINIGGGFHHASRSKGGGFCIYADITLALTFLFSSQLISKAVIV 166
Query: 62 DLDAHQ 67
DLDAHQ
Sbjct: 167 DLDAHQ 172
>gi|403332831|gb|EJY65466.1| Histone deacetylase 11 [Oxytricha trifallax]
Length = 381
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 134/313 (42%), Positives = 195/313 (62%), Gaps = 17/313 (5%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFIT-QDNIIEPQEV 169
+PIVY P+YN+ F LEK+HPFDS K++ +F L K K I Q I P
Sbjct: 68 FPIVYSPKYNITAFGLEKIHPFDSCKYQRVFESLRK--------KKVINDQTQIHSPSIP 119
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
+ E LL + YL L++S + EV PL +P++F++ L PM G+++A
Sbjct: 120 TREFLLEKMSAWYLFKLQYSIYICKCLEV-PLFFLPSWFLRFRVLNPMLRATQGSVDASC 178
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
+AL++GW+IN+ GG+HHAS T GGGFC Y DI+ +V + + I+ MI+DLDAHQGNG
Sbjct: 179 IALQQGWAINLAGGYHHASCTCGGGFCIYPDITFIVHNVKKYHGINRVMIIDLDAHQGNG 238
Query: 290 YEKDFMNETRIFIMETCITSK------AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+E+DF+ + + I++ + A+ AI+ RI + Y +D+ +L K+++ + + +
Sbjct: 239 HERDFLRDPDVHIVDAYNPNIYPGDDFAETAIKTRIPITHYDDDESFLHKLKSQITEAYQ 298
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER-RVPIVMLTSGGYLK 402
F P+ ++YNAGTD + NDPLG L ISP GII+RDEL+F A E+ RVPIVM+ SGGY
Sbjct: 299 QFRPEFVIYNAGTDCMENDPLGQLNISPAGIIQRDELMFEMAIEQFRVPIVMVLSGGYQM 358
Query: 403 QTARIIADSILNL 415
A +IADSI N
Sbjct: 359 SNAPVIADSIENF 371
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 48/64 (75%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+++A +AL++GW+IN+ GG+HHAS T GGGFC Y DI+ +V + + I+ MI+DL
Sbjct: 172 GSVDASCIALQQGWAINLAGGYHHASCTCGGGFCIYPDITFIVHNVKKYHGINRVMIIDL 231
Query: 64 DAHQ 67
DAHQ
Sbjct: 232 DAHQ 235
>gi|10437935|dbj|BAB15127.1| unnamed protein product [Homo sapiens]
gi|48146799|emb|CAG33622.1| HDAC11 [Homo sapiens]
Length = 225
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 120/203 (59%), Positives = 154/203 (75%), Gaps = 7/203 (3%)
Query: 227 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAH 285
AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+DLDAH
Sbjct: 2 AGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAH 61
Query: 286 QGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLE 339
QGNG+E+DFM++ R++IM+ AK+AIR ++EL TED YL+K+E ++
Sbjct: 62 QGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIK 121
Query: 340 RSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGG 399
+SL+ PD++VYNAGTD+L D LG L+ISP GI++RDELVF R RRVPI+M+TSGG
Sbjct: 122 KSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVTSGG 181
Query: 400 YLKQTARIIADSILNLADLGLIS 422
Y K+TARIIADSILNL LGLI
Sbjct: 182 YQKRTARIIADSILNLFGLGLIG 204
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
Query: 8 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAH 66
AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+DLDAH
Sbjct: 2 AGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAH 61
Query: 67 Q 67
Q
Sbjct: 62 Q 62
>gi|302837171|ref|XP_002950145.1| hypothetical protein VOLCADRAFT_59975 [Volvox carteri f.
nagariensis]
gi|300264618|gb|EFJ48813.1| hypothetical protein VOLCADRAFT_59975 [Volvox carteri f.
nagariensis]
Length = 428
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 128/323 (39%), Positives = 191/323 (59%), Gaps = 25/323 (7%)
Query: 106 VVTRPWP------IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFIT 159
+ + PWP +VY P YN+ FF +EKLHPFDS K+ + + L K +
Sbjct: 44 LCSGPWPGPCQLPVVYHPSYNISFFGVEKLHPFDSCKYGKVMSALKKQ--------HVLR 95
Query: 160 QDNIIEPQEVSEEQLLIAHTEKYLKSLKW-SFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
+ ++P+E S E L HT+ YL + + +F + ++E+ L +PN +Q + PM+
Sbjct: 96 EGQTVQPREASLEVLADVHTQDYLYRIHYHNFTIVQVTELAALSLLPNKLLQWRIVAPMK 155
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
HVGGT+ A LAL RGW+INIGGG HHAS ++G G+C + DI L V+ + ++ +
Sbjct: 156 LHVGGTMLATGLALERGWAINIGGGMHHASSSRGMGWCPFDDIVLAVRRVRKAAGRLVVL 215
Query: 279 IVDLDAHQGNGYEKDF----MNETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKI 334
+DLDAHQGNG E+DF RIF ++ +AK AI +EL +D L ++
Sbjct: 216 YIDLDAHQGNGVERDFYIIDFYNARIFPLD----DEAKPAIDIPVELRFGADDDEILGRL 271
Query: 335 EAGLERSLRSFC-PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE-RRVPI 392
A L + R+ PD+++YNAGTDVL DPLG L ++ G+++RDE+V+ R+ R P+
Sbjct: 272 HAALAVAARTLPRPDLVIYNAGTDVLAGDPLGRLGMTAAGVVQRDEVVWRWCRDMARAPV 331
Query: 393 VMLTSGGYLKQTARIIADSILNL 415
VM SGGY +++A +I SI NL
Sbjct: 332 VMALSGGYTRESAGVITASIRNL 354
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 48/74 (64%), Gaps = 4/74 (5%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LAL RGW+INIGGG HHAS ++G G+C + DI L V+ + ++ + +DL
Sbjct: 160 GTMLATGLALERGWAINIGGGMHHASSSRGMGWCPFDDIVLAVRRVRKAAGRLVVLYIDL 219
Query: 64 DAHQFS----DYYF 73
DAHQ + D+Y
Sbjct: 220 DAHQGNGVERDFYI 233
>gi|384248980|gb|EIE22463.1| hypothetical protein COCSUDRAFT_16559 [Coccomyxa subellipsoidea
C-169]
Length = 370
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 130/352 (36%), Positives = 200/352 (56%), Gaps = 21/352 (5%)
Query: 73 FPSAHSIKRKRKVEFLK-ERKALEDEITSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHP 131
F SA + R R +F + R+ L + I E + PI Y YN+ F LE+ HP
Sbjct: 4 FASASADARGRPAQFGRCSRRELAERIRGS-YEGWSSTKLPIAYADAYNIGFLGLERFHP 62
Query: 132 FDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFN 191
FDS+K+ + N L + + D +++P E +++ L H+E+YL S+ S +
Sbjct: 63 FDSRKFGKVVNNL--------DASGILNPDQLVQPPEATQQVLRDVHSEEYLLSINTSSS 114
Query: 192 -VAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASET 250
+A I+E+ + +PN VQ RPMR HVGGT+ A +A+ GW+IN+GGG HHAS
Sbjct: 115 KMAEITEIAAIGFLPNSVVQHRLNRPMRIHVGGTMLAVGMAMEWGWAINLGGGMHHASVD 174
Query: 251 KGGGFCAYADISLLVKLLFQSKS--ISTAMIVDLDAHQGNGYEKDFMN--ETRIFIMETC 306
GGG+C Y D +L ++ L + + AM++DLD HQGNG+ + ++ + ++I++
Sbjct: 175 NGGGWCVYDDWTLALRKLRRETGNVVQKAMLIDLDVHQGNGHARTKLHFGDKDLYILDLY 234
Query: 307 IT------SKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLL 360
+ AK AI C + + T D+ YL + GL + + F PDII+YNAGTD+L
Sbjct: 235 NADLWPWDTTAKAAINCELPMKSGTGDEEYLSMLSKGLHTAFQEFAPDIILYNAGTDILR 294
Query: 361 NDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSI 412
DPLG ++S + + +RDE+VF A + VPI M SGGY K +A +I++ I
Sbjct: 295 GDPLGRCSVSAEAVAKRDEMVFQAAYDAGVPICMALSGGYAKDSAGVISECI 346
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKS--ISTAMIV 61
GT+ A +A+ GW+IN+GGG HHAS GGG+C Y D +L ++ L + + AM++
Sbjct: 147 GTMLAVGMAMEWGWAINLGGGMHHASVDNGGGWCVYDDWTLALRKLRRETGNVVQKAMLI 206
Query: 62 DLDAHQ 67
DLD HQ
Sbjct: 207 DLDVHQ 212
>gi|159478703|ref|XP_001697440.1| histone deacetylase [Chlamydomonas reinhardtii]
gi|158274319|gb|EDP00102.1| histone deacetylase [Chlamydomonas reinhardtii]
Length = 311
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 179/310 (57%), Gaps = 18/310 (5%)
Query: 117 PEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLI 176
P+YN+ FF +EKLHPFD+ K+ + L K L +A+ +T P+E + E L
Sbjct: 1 PQYNISFFGIEKLHPFDAGKFAKVVKAL-KRDGVVLGDAQLVT------PREATPEMLSD 53
Query: 177 AHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRG 235
HT YL + +F V ++E+ L +PN +Q + PMR HVGGT+ A LAL RG
Sbjct: 54 VHTADYLHRIHNHNFTVVQVTELAALAMLPNKLLQWRVVAPMRMHVGGTMLALGLALERG 113
Query: 236 WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST--AMIVDLDAHQGNGYEKD 293
W++NIGGG HHAS +G G+C + DI L +++DLDAHQGNG E+
Sbjct: 114 WAVNIGGGMHHASADRGMGWCPFDDIMLGAAAAGDGAGAGGLKVLVIDLDAHQGNGVERL 173
Query: 294 FMNETRIFIMETCITS------KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC- 346
+ + +++I++ +AK I R+EL TED YL ++ A LER+
Sbjct: 174 ALGDGQLYILDMYNAGVFPRDDEAKAGIDIRVELKSGTEDDVYLNRLRAALERAALVLPR 233
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE-RRVPIVMLTSGGYLKQTA 405
PD++VYNAGTDVL DPLG L +S G++ RDELV+ R+ R PI ML SGGY K +A
Sbjct: 234 PDLVVYNAGTDVLAGDPLGRLGVSHAGVVERDELVWRWCRDVARAPIAMLLSGGYAKDSA 293
Query: 406 RIIADSILNL 415
+I S+ NL
Sbjct: 294 AVITASLTNL 303
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST--AMIV 61
GT+ A LAL RGW++NIGGG HHAS +G G+C + DI L +++
Sbjct: 101 GTMLALGLALERGWAVNIGGGMHHASADRGMGWCPFDDIMLGAAAAGDGAGAGGLKVLVI 160
Query: 62 DLDAHQ 67
DLDAHQ
Sbjct: 161 DLDAHQ 166
>gi|254212167|gb|ACT65744.1| histone deacetylase family RPD3/HDA1 class III [Hordeum vulgare]
Length = 225
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 112/218 (51%), Positives = 151/218 (69%), Gaps = 6/218 (2%)
Query: 210 QKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF 269
Q+ L P R VGG++ + LAL RGW+IN+GGGFHH S +GGGFCAYADISL ++ F
Sbjct: 1 QQRLLYPFRKQVGGSILSAKLALERGWAINVGGGFHHCSAEEGGGFCAYADISLCIQFAF 60
Query: 270 QSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITS------KAKEAIRCRIELAP 323
+IS MI+DLDAHQGNGYEKDF N+ R++I++ AK I +IEL
Sbjct: 61 VRLNISRVMIIDLDAHQGNGYEKDFANDGRVYILDMYNAGIYPFDYAAKRYIDQKIELVS 120
Query: 324 YTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFM 383
TE YL++++ L+ + F P +I+YNAGTD+L DPLG L ISP+G++ RDE VF
Sbjct: 121 GTETDDYLDQLDKALKVAQTRFQPQLIIYNAGTDILDGDPLGNLKISPEGVVIRDEKVFK 180
Query: 384 KARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLI 421
A+++ +P+VM+TSGGY+K +AR+IADSI NL+ LI
Sbjct: 181 FAKDQNIPLVMMTSGGYMKSSARVIADSITNLSQKDLI 218
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 51/68 (75%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ + LAL RGW+IN+GGGFHH S +GGGFCAYADISL ++ F +IS MI+DL
Sbjct: 14 GSILSAKLALERGWAINVGGGFHHCSAEEGGGFCAYADISLCIQFAFVRLNISRVMIIDL 73
Query: 64 DAHQFSDY 71
DAHQ + Y
Sbjct: 74 DAHQGNGY 81
>gi|341892614|gb|EGT48549.1| CBN-HDAC-11 protein [Caenorhabditis brenneri]
gi|341899537|gb|EGT55472.1| hypothetical protein CAEBREN_32506 [Caenorhabditis brenneri]
Length = 284
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 120/284 (42%), Positives = 167/284 (58%), Gaps = 14/284 (4%)
Query: 156 KFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVA-VPNYFVQKCYL 214
K I ++EP + E+L H KYLKS++ A I E+ PLV +P ++ L
Sbjct: 2 KLIRSSMLVEPNLPTFEELSRVHDRKYLKSVRNPLKAAQIVEI-PLVGCLPPCIIETKLL 60
Query: 215 RPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSI 274
P+R GG++ A LAL+ GW+IN+GGGFHHAS + GGGFC YADI++ + LF K+I
Sbjct: 61 HPLRLQAGGSVLAANLALKHGWAINVGGGFHHASHSDGGGFCFYADITMAILDLFDKKAI 120
Query: 275 STAMIVDLDAHQGNGYEKDFMNETRIFIMETCI------TSKAKEAIRCRIELAPYTEDQ 328
+ A++VD+DAHQGNG+ +DF N +F+ + +A++ I + + +T D
Sbjct: 121 TNAIVVDVDAHQGNGHARDFANNPNVFVFDVFNPYVYPHDREARQFINKAVHVNGHTTDT 180
Query: 329 HYLEKIEAGLERSL---RSFCP---DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVF 382
YL ++ L + L P D +++NAGTD L DPLG + +SPQ II RDE+VF
Sbjct: 181 SYLSELRKQLTKCLADREKLTPPGFDFMMFNAGTDSLSGDPLGAMKLSPQCIIARDEIVF 240
Query: 383 MKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLISRPYN 426
AR + +PI MLTSGGY K A IIA SI NL LI N
Sbjct: 241 KMARSKGIPICMLTSGGYQKNNALIIAQSIENLHSKKLIDLSIN 284
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 51/64 (79%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ A LAL+ GW+IN+GGGFHHAS + GGGFC YADI++ + LF K+I+ A++VD+
Sbjct: 69 GSVLAANLALKHGWAINVGGGFHHASHSDGGGFCFYADITMAILDLFDKKAITNAIVVDV 128
Query: 64 DAHQ 67
DAHQ
Sbjct: 129 DAHQ 132
>gi|119584573|gb|EAW64169.1| histone deacetylase 11, isoform CRA_l [Homo sapiens]
Length = 208
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 101/194 (52%), Positives = 134/194 (69%), Gaps = 9/194 (4%)
Query: 99 TSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI 158
T++ + V WPIVY P YN+ F LEKLHPFD+ KW + N+L E K +
Sbjct: 23 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLL 74
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
+ ++E +E SEE LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R
Sbjct: 75 SDSMLVEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLR 134
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTA 277
GGT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A
Sbjct: 135 TQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRA 194
Query: 278 MIVDLDAHQGNGYE 291
I+DLDAHQGNG+E
Sbjct: 195 TIIDLDAHQGNGHE 208
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 139 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 198
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 199 LDAHQ 203
>gi|145509340|ref|XP_001440611.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407834|emb|CAK73214.1| unnamed protein product [Paramecium tetraurelia]
Length = 366
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 122/325 (37%), Positives = 193/325 (59%), Gaps = 22/325 (6%)
Query: 100 SEPQESVVTR--PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKF 157
SE QE ++ PIVY YN+ +EK HPFDS K+ +++ + + V+A+
Sbjct: 53 SEQQEIIIRNMPEIPIVYHENYNITACGIEKWHPFDSCKYGNVYRQIRQK-----VKAQH 107
Query: 158 ITQDNIIEPQEVSEEQLL-IAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRP 216
T P +S LL + + YL + +S V+ + E+ P+ +P F++ L P
Sbjct: 108 FT------PSMLSRGTLLYLGMSRWYLLKMCYSAYVSTLIEL-PVFFLPGAFLRSSLLDP 160
Query: 217 MRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST 276
M G++ A LA+ +GW+IN+ GG+HHAS GGGFC Y DI+L+V L + ++++
Sbjct: 161 MLLATSGSIYAAKLAIEKGWAINLSGGYHHASLNGGGGFCIYPDITLVVNYLKKCQNLNK 220
Query: 277 AMIVDLDAHQGNGYEKDFMNETRIFIMETCIT------SKAKEAIRCRIELAPYTEDQHY 330
+IVDLDAHQGNGYE+DF+ ++ ++I++ + +A++AI C + T D+ Y
Sbjct: 221 IVIVDLDAHQGNGYERDFLQDSSVYIIDFYNSYIYPGDHEAEQAINCFEHVDKNTTDEQY 280
Query: 331 LEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRV 390
+ ++ LE+ L+ + I+YNAG+D++ DPLG ISP G+ RRDE+VF A +++
Sbjct: 281 IMTLQRNLEKHLKDDM-EFIIYNAGSDIMGGDPLGNCCISPAGLQRRDEVVFKWANHKKI 339
Query: 391 PIVMLTSGGYLKQTARIIADSILNL 415
PI+ML SGGY K+ I +SIL L
Sbjct: 340 PILMLLSGGYQKENTYAIGESILQL 364
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 50/68 (73%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ A LA+ +GW+IN+ GG+HHAS GGGFC Y DI+L+V L + ++++ +IVDL
Sbjct: 167 GSIYAAKLAIEKGWAINLSGGYHHASLNGGGGFCIYPDITLVVNYLKKCQNLNKIVIVDL 226
Query: 64 DAHQFSDY 71
DAHQ + Y
Sbjct: 227 DAHQGNGY 234
>gi|221091523|ref|XP_002170251.1| PREDICTED: histone deacetylase 11-like, partial [Hydra
magnipapillata]
Length = 237
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 155/231 (67%), Gaps = 16/231 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PI+Y YN+ FF +EKLHPFDS KW I L V+ I ++ II+ +++SE
Sbjct: 16 PIIYNSMYNISFFGMEKLHPFDSGKWGRIIKML--------VDESVIKKEEIIDSEQISE 67
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+LL+ HT+ YL+SLK SF VA I+E+ P+ +P++ V + L P ++ GGT+ A +A
Sbjct: 68 TELLLVHTKDYLQSLKSSFTVARITEIWPVALLPHFIVNRNLLIPFKFQTGGTVLAAKVA 127
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNGY 290
+ RGW+INIGGGFHH S ++GGGFCAYADI+L +K+L ++ MI+DLDAHQGNG+
Sbjct: 128 MERGWAINIGGGFHHCSSSEGGGFCAYADITLAIKILKNEFDAVRNIMIIDLDAHQGNGH 187
Query: 291 EKDFMNETRIFIMETCIT------SKAKEAIRCRIELAPYTEDQHYLEKIE 335
E+DF++++ ++IM+ S A+ AI I+L PYTED+ YLE I+
Sbjct: 188 ERDFIDKS-VYIMDAYNAYIYPSDSSAEAAISRIIKLKPYTEDKEYLELIK 237
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ A +A+ RGW+INIGGGFHH S ++GGGFCAYADI+L +K+L ++ MI+D
Sbjct: 119 GTVLAAKVAMERGWAINIGGGFHHCSSSEGGGFCAYADITLAIKILKNEFDAVRNIMIID 178
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 179 LDAHQ 183
>gi|149174347|ref|ZP_01852974.1| deacetylase [Planctomyces maris DSM 8797]
gi|148846892|gb|EDL61228.1| deacetylase [Planctomyces maris DSM 8797]
Length = 319
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 124/316 (39%), Positives = 175/316 (55%), Gaps = 19/316 (6%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
IVY P+YN+ F+ LE+LHPFDS+K+ WK + K + Q ++ + VS E
Sbjct: 4 IVYSPKYNIGFYGLERLHPFDSRKYGRA----WKQLRARF--GKSLRQIHVSPERAVSRE 57
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
+LL+ HTE YLK L S VA E+ PL +P + + LRPMR+ GT+ A +L
Sbjct: 58 ELLLVHTEGYLKQLSNSMYVAQALELAPLQFLPFWIIDHHVLRPMRWATRGTIVAAQESL 117
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA---MIVDLDAHQGNG 289
G +IN+ GG+HH+ +G GFC YAD ++ V L Q IS + VD DAHQGNG
Sbjct: 118 EHGLAINLSGGYHHSKPAQGEGFCVYADAAIAVATLRQQALISETDRIVYVDTDAHQGNG 177
Query: 290 YEKDFMNETRIFIMETCITS-------KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSL 342
FMN+ R F+ + A+E + C I + D+ Y+ ++E L L
Sbjct: 178 VSHAFMNDNRAFLFDIFNARAYPQNDVAARERLDCEIGITGSWTDREYMLELENRLPGFL 237
Query: 343 RSFCPD---IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGG 399
S C + +YNAGTD+ DPLG L IS I RD V + R+R++P +ML SGG
Sbjct: 238 DSVCQSPVGLAIYNAGTDIFAGDPLGGLNISAPMIRERDLYVVSELRKRQIPTIMLLSGG 297
Query: 400 YLKQTARIIADSILNL 415
Y KQ+ +++ADS+ L
Sbjct: 298 YTKQSFQLVADSVTAL 313
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA---MI 60
GT+ A +L G +IN+ GG+HH+ +G GFC YAD ++ V L Q IS +
Sbjct: 108 GTIVAAQESLEHGLAINLSGGYHHSKPAQGEGFCVYADAAIAVATLRQQALISETDRIVY 167
Query: 61 VDLDAHQ 67
VD DAHQ
Sbjct: 168 VDTDAHQ 174
>gi|119584563|gb|EAW64159.1| histone deacetylase 11, isoform CRA_c [Homo sapiens]
Length = 193
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 96/181 (53%), Positives = 131/181 (72%), Gaps = 9/181 (4%)
Query: 126 LEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKS 185
LEKLHPFD+ KW + N+L E K ++ ++E +E SEE LL+ HT +YL
Sbjct: 3 LEKLHPFDAGKWGKVINFL--------KEEKLLSDSMLVEAREASEEDLLVVHTRRYLNE 54
Query: 186 LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFH 245
LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R GGT+ AG LA+ RGW+IN+GGGFH
Sbjct: 55 LKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIMAGKLAVERGWAINVGGGFH 114
Query: 246 HASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGNGYEKDFMNETRIFIME 304
H S +GGGFCAYADI+L +K LF+ + IS A I+DLDAHQGNG+E+DFM++ R++IM+
Sbjct: 115 HCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAHQGNGHERDFMDDKRVYIMD 174
Query: 305 T 305
Sbjct: 175 V 175
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 92 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 151
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 152 LDAHQ 156
>gi|145497186|ref|XP_001434582.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124401709|emb|CAK67185.1| unnamed protein product [Paramecium tetraurelia]
Length = 366
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 184/311 (59%), Gaps = 20/311 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY YN+ +EK HPFDS K+ +++ + + + + + P+ +S
Sbjct: 67 PIVYDESYNITACGIEKWHPFDSCKYGNVYRQIRQQV-----------KGSHFTPKMLSR 115
Query: 172 EQLL-IAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
L + ++ YL + +S + + E+ P+ +P F++ C L M G+++A L
Sbjct: 116 GTFLYLGMSKWYLLKMCYSAYASTLIEL-PVFFLPGAFLRSCLLDSMLLATSGSIQAAKL 174
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL +GW+IN+ GG+HHAS +GGGFC Y DI+L+V L + ++ +IVDLDAHQGNGY
Sbjct: 175 ALEKGWAINLSGGYHHASLNRGGGFCIYPDITLVVNYLKRCCNLKKIVIVDLDAHQGNGY 234
Query: 291 EKDFMNETRIFIMETCIT------SKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRS 344
E+DF+N++ ++I++ + A++AI C + T DQ Y++ ++ LE L+
Sbjct: 235 ERDFLNDSSVYIIDFYNSYIYPGDHIAEQAISCFEHIDKDTSDQQYIKTLQRDLETHLKD 294
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT 404
+ ++YNAGTD++ DPLG IS GI RRDE+VF A+ +++P +ML SGGY K+
Sbjct: 295 D-MEFLIYNAGTDIMAGDPLGHCCISAAGIKRRDEVVFKWAQHKKIPFLMLLSGGYQKEN 353
Query: 405 ARIIADSILNL 415
I +SIL L
Sbjct: 354 TFAIGESILQL 364
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 50/68 (73%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+++A LAL +GW+IN+ GG+HHAS +GGGFC Y DI+L+V L + ++ +IVDL
Sbjct: 167 GSIQAAKLALEKGWAINLSGGYHHASLNRGGGFCIYPDITLVVNYLKRCCNLKKIVIVDL 226
Query: 64 DAHQFSDY 71
DAHQ + Y
Sbjct: 227 DAHQGNGY 234
>gi|413954351|gb|AFW87000.1| hypothetical protein ZEAMMB73_180578 [Zea mays]
Length = 240
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 143/219 (65%), Gaps = 12/219 (5%)
Query: 86 EFLKERKALEDEITSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLW 145
E L++++ L ++ E V + P+VY P Y++ F LEKLHPF+S KW I YL
Sbjct: 15 EALRQKRILSSKLYLE----VPSSKAPVVYSPAYDISFLGLEKLHPFESAKWGRICRYLT 70
Query: 146 KHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP 205
+ ++ + ++EP E +E LL+ HTE YL SLK SF V++I EV P+ VP
Sbjct: 71 RE--------GYLDKKQMVEPLEACKEDLLVVHTEAYLNSLKCSFRVSSIVEVPPVSLVP 122
Query: 206 NYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLV 265
N+ V + L P R VGG++ + LA RGW+IN+GGGFHH S +GGGFCAYADISL +
Sbjct: 123 NWIVHRKLLHPFRKQVGGSILSAKLAFERGWAINVGGGFHHCSADEGGGFCAYADISLCI 182
Query: 266 KLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIME 304
+ F +IS+ +I+DLDAHQGNG+EKDF N+ R++I++
Sbjct: 183 QFAFVRLNISSVLIIDLDAHQGNGHEKDFANDGRVYILD 221
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 49/64 (76%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ + LA RGW+IN+GGGFHH S +GGGFCAYADISL ++ F +IS+ +I+DL
Sbjct: 140 GSILSAKLAFERGWAINVGGGFHHCSADEGGGFCAYADISLCIQFAFVRLNISSVLIIDL 199
Query: 64 DAHQ 67
DAHQ
Sbjct: 200 DAHQ 203
>gi|355694227|gb|AER99599.1| Histone deacetylase 11 [Mustela putorius furo]
Length = 185
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 96/185 (51%), Positives = 132/185 (71%), Gaps = 7/185 (3%)
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
S+E LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ L+P+R GGT+ AG
Sbjct: 1 SDEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLKPLRTQTGGTIMAGK 60
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGN 288
LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A IVDLDAHQGN
Sbjct: 61 LAMERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIVDLDAHQGN 120
Query: 289 GYEKDFMNETRIFIMETCI------TSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSL 342
G+E+DFM + R++IM+ AK+AIR ++EL TED YL+K+E L+++L
Sbjct: 121 GHERDFMGDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNLQKAL 180
Query: 343 RSFCP 347
+ P
Sbjct: 181 QEHPP 185
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 24/131 (18%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A IVD
Sbjct: 54 GTIMAGKLAMERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIVD 113
Query: 63 LDAHQ-------------------FSDYYFP----SAHSIKRKRKVEFLKERKALEDEIT 99
LDAHQ ++ + +P + +I+RK ++E+ E D++
Sbjct: 114 LDAHQGNGHERDFMGDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVE 173
Query: 100 SEPQESVVTRP 110
Q+++ P
Sbjct: 174 RNLQKALQEHP 184
>gi|320164043|gb|EFW40942.1| histone deacetylase 11 [Capsaspora owczarzaki ATCC 30864]
Length = 372
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/319 (37%), Positives = 176/319 (55%), Gaps = 41/319 (12%)
Query: 112 PIVYRPEYNVHFFKLEKL---HPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQE 168
P+ Y YN+ F +EK+ HPFD+ K++ +F KH+ + + F + P
Sbjct: 86 PVFYSEAYNMGFGGIEKVLSPHPFDATKYRGVF----KHLRAGPLASAFAPARIMAPPAV 141
Query: 169 VSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAG 228
S++ LLIAH+E+YL+SLK S VA I+EV L +P + V + P R GT A
Sbjct: 142 ASDQDLLIAHSEEYLRSLKSSTTVAHIAEVITLAVLPIFMVNYGIVTPQRTMTSGTAFAA 201
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
A++ GW+IN+GGGFHHAS +GGGFC +ADIS +KLL + + + AMIVDLDAHQGN
Sbjct: 202 KAAMQAGWAINVGGGFHHASCNEGGGFCIFADISFAIKLLMR-EGLQRAMIVDLDAHQGN 260
Query: 289 GYEKDF-MNETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
G+E DF ++ R++I++ Y I G ++
Sbjct: 261 GHENDFAQDKDRVYILDV------------------------YNRDIYPGDRKAKSGMSL 296
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
++ V + D +A+S QGI+ RDE VF +A R +PIVM+ SGGY +R+
Sbjct: 297 NVPVSSGIAD-------AEMAVSEQGILDRDEAVFRRALSRNIPIVMVLSGGYQSSNSRV 349
Query: 408 IADSILNLAD-LGLISRPY 425
IA SI N+ + L+SRP+
Sbjct: 350 IARSIENMVEKFDLLSRPW 368
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 1 MEYGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMI 60
M GT A A++ GW+IN+GGGFHHAS +GGGFC +ADIS +KLL + + + AMI
Sbjct: 193 MTSGTAFAAKAAMQAGWAINVGGGFHHASCNEGGGFCIFADISFAIKLLMR-EGLQRAMI 251
Query: 61 VDLDAHQ 67
VDLDAHQ
Sbjct: 252 VDLDAHQ 258
>gi|217072904|gb|ACJ84812.1| unknown [Medicago truncatula]
Length = 201
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 98/192 (51%), Positives = 131/192 (68%), Gaps = 6/192 (3%)
Query: 236 WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFM 295
IN+GGGFHH S GGGFCAYADISL + F +IS +I+DLDAHQGNG+E DF
Sbjct: 1 MGINVGGGFHHCSAENGGGFCAYADISLCIHFAFVQLNISRVIIIDLDAHQGNGHEMDFA 60
Query: 296 NETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDI 349
++ R++I++ + +A+ I ++++ T + YL K++ LE + R F P++
Sbjct: 61 DDNRVYILDMYNPGIYPLDHEARSYINQKVDVKSGTRTEEYLLKLDEALEVAGRRFNPEL 120
Query: 350 IVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIA 409
+VYNAGTD+L DPLG L ISP GI RDE VF AR++ +PIVMLTSGGY+K +AR+IA
Sbjct: 121 LVYNAGTDILEGDPLGRLKISPDGIALRDEKVFRFARKKNIPIVMLTSGGYMKSSARVIA 180
Query: 410 DSILNLADLGLI 421
DSILNL LI
Sbjct: 181 DSILNLEKKCLI 192
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 36/51 (70%)
Query: 17 WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
IN+GGGFHH S GGGFCAYADISL + F +IS +I+DLDAHQ
Sbjct: 1 MGINVGGGFHHCSAENGGGFCAYADISLCIHFAFVQLNISRVIIIDLDAHQ 51
>gi|443475316|ref|ZP_21065269.1| Histone deacetylase [Pseudanabaena biceps PCC 7429]
gi|443019838|gb|ELS33872.1| Histone deacetylase [Pseudanabaena biceps PCC 7429]
Length = 326
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 121/323 (37%), Positives = 177/323 (54%), Gaps = 19/323 (5%)
Query: 101 EPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQ 160
E +S++ RP +VY P Y++ F LEKLHPFDS K+ + L + L+
Sbjct: 3 ETSDSIIIRP-KVVYSPNYDIKFLGLEKLHPFDSCKYGRAWRVLADRFGDRLIA------ 55
Query: 161 DNIIEPQEVSEEQLL-IAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRY 219
N + P + ++L + HT YLK+L+ S VA E+ L +P + L+PMR
Sbjct: 56 -NSLAPVAPAPTEILQLVHTTDYLKNLQRSHFVAQSLEMDSLGFLPIGILDSRVLQPMRL 114
Query: 220 HVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST--- 276
GT+ A AL G +IN+ GG+HHAS +G GFC Y+DI++ + LL QS+ I+
Sbjct: 115 ATMGTVMASEAALEFGVAINLSGGYHHASAERGEGFCIYSDIAIAISLLRQSQKINAEDR 174
Query: 277 AMIVDLDAHQGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHY 330
I+DLDAHQGNG + F + I I++ + AKE + I L T+D Y
Sbjct: 175 VAIIDLDAHQGNGLARIFYEDPSIHILDMYNQQIYPNDTYAKERVDWAIPLLSGTKDDRY 234
Query: 331 LEKIEAGLERSLR-SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERR 389
L ++ L L+ S P I+ YNAGTD+ D LG L +S +G++ RD VF +
Sbjct: 235 LGLLKDRLPAFLQESDLPKIVFYNAGTDIYERDLLGGLKVSEEGVLERDRFVFQTVIDLG 294
Query: 390 VPIVMLTSGGYLKQTARIIADSI 412
+P+VM+ SGGY ++ R+IA SI
Sbjct: 295 IPLVMVLSGGYASESYRLIAHSI 317
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST---AMI 60
GT+ A AL G +IN+ GG+HHAS +G GFC Y+DI++ + LL QS+ I+ I
Sbjct: 118 GTVMASEAALEFGVAINLSGGYHHASAERGEGFCIYSDIAIAISLLRQSQKINAEDRVAI 177
Query: 61 VDLDAHQ 67
+DLDAHQ
Sbjct: 178 IDLDAHQ 184
>gi|16226804|gb|AAL16266.1|AF428336_1 AT5g26040/T1N24_9 [Arabidopsis thaliana]
gi|25090256|gb|AAN72263.1| At5g26040/T1N24_9 [Arabidopsis thaliana]
Length = 261
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 92/188 (48%), Positives = 119/188 (63%), Gaps = 8/188 (4%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
I+Y Y++ F +EKLHPFDS KW + +L V F+ + I+EP E S+
Sbjct: 76 IIYSSSYDISFMGIEKLHPFDSSKWGRVCKFL--------VSDGFLEEKAIVEPLEASKI 127
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
LL+ H+E YL SLK S VA I+EV P+ PN+ VQ+ L P R VGGT+ A LA
Sbjct: 128 DLLVVHSENYLNSLKSSATVARITEVAPVAFFPNFLVQQKVLYPFRKQVGGTILAAKLAT 187
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
RGW+INIGGGFHH + +GGGFCA+ADISL + F IS MI+DLDAHQGNG+E
Sbjct: 188 ERGWAINIGGGFHHCTAERGGGFCAFADISLCIHFAFLRLRISRVMIIDLDAHQGNGHET 247
Query: 293 DFMNETRI 300
D +++ I
Sbjct: 248 DLGDDSMI 255
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 46/64 (71%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LA RGW+INIGGGFHH + +GGGFCA+ADISL + F IS MI+DL
Sbjct: 178 GTILAAKLATERGWAINIGGGFHHCTAERGGGFCAFADISLCIHFAFLRLRISRVMIIDL 237
Query: 64 DAHQ 67
DAHQ
Sbjct: 238 DAHQ 241
>gi|119584565|gb|EAW64161.1| histone deacetylase 11, isoform CRA_e [Homo sapiens]
Length = 190
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/173 (49%), Positives = 116/173 (67%), Gaps = 8/173 (4%)
Query: 99 TSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI 158
T++ + V WPIVY P YN+ F LEKLHPFD+ KW + N+L E K +
Sbjct: 4 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLL 55
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
+ ++E +E SEE LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R
Sbjct: 56 SDSMLVEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLR 115
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS 271
GGT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K+ S
Sbjct: 116 TQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKVFCLS 168
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 39/49 (79%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS 52
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K+ S
Sbjct: 120 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKVFCLS 168
>gi|119584561|gb|EAW64157.1| histone deacetylase 11, isoform CRA_a [Homo sapiens]
Length = 165
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 114/162 (70%), Gaps = 9/162 (5%)
Query: 126 LEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKS 185
LEKLHPFD+ KW + N+L E K ++ ++E +E SEE LL+ HT +YL
Sbjct: 3 LEKLHPFDAGKWGKVINFL--------KEEKLLSDSMLVEAREASEEDLLVVHTRRYLNE 54
Query: 186 LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFH 245
LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R GGT+ AG LA+ RGW+IN+GGGFH
Sbjct: 55 LKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIMAGKLAVERGWAINVGGGFH 114
Query: 246 HASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQ 286
H S +GGGFCAYADI+L +K LF+ + IS A I+DLDAHQ
Sbjct: 115 HCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAHQ 156
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 53/67 (79%), Gaps = 1/67 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 92 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 151
Query: 63 LDAHQFS 69
LDAHQ S
Sbjct: 152 LDAHQVS 158
>gi|168699615|ref|ZP_02731892.1| Deacetylases, including yeast histone deacetylase and acetoin
utilization protein [Gemmata obscuriglobus UQM 2246]
Length = 324
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 106/318 (33%), Positives = 164/318 (51%), Gaps = 22/318 (6%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIE-PQEVSE 171
++Y YN+ F LE+LHPFDS+K + W+ I + + + ++ P+ VS
Sbjct: 3 LIYTRRYNIGFLGLERLHPFDSRK----YGRAWRAIGSV---GRLLRDRALVGVPRPVSV 55
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+L + H YL L +A + E+ L +P + V + LRPMR+ V G+L A A
Sbjct: 56 AELSVTHDPSYLARLGDPRELAWVLELPFLRRLPAWAVWRAVLRPMRWAVAGSLVAAREA 115
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST---AMIVDLDAHQGN 288
L G ++N+ GG+HHA G GFC + DI+ LV L + ++ + VDLDAHQGN
Sbjct: 116 LTHGLALNLSGGYHHARPNGGEGFCVFNDIAHLVHGLRTAGRLAPDDRVVYVDLDAHQGN 175
Query: 289 GYEKDFMNETRIFIMET-------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERS 341
G F ++ R+F+ + +A+ I C + L + Y+ + L
Sbjct: 176 GVCHHFRSDPRVFLYDAFNPHIYPAHDQEARRRIDCAVPLPDHCTGGEYMRLLNLTLPGF 235
Query: 342 LRSFCPD----IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L S C + VYNAGTDV D LG L ++ ++ RD V + R R VP VML S
Sbjct: 236 LDSVCRSGRVGLAVYNAGTDVFAGDTLGGLNLTAADVLARDLYVIEQLRGRVVPTVMLLS 295
Query: 398 GGYLKQTARIIADSILNL 415
GGY +++ R++A++ + L
Sbjct: 296 GGYSRESYRLVANTAVEL 313
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST---AMI 60
G+L A AL G ++N+ GG+HHA G GFC + DI+ LV L + ++ +
Sbjct: 107 GSLVAAREALTHGLALNLSGGYHHARPNGGEGFCVFNDIAHLVHGLRTAGRLAPDDRVVY 166
Query: 61 VDLDAHQ 67
VDLDAHQ
Sbjct: 167 VDLDAHQ 173
>gi|119584564|gb|EAW64160.1| histone deacetylase 11, isoform CRA_d [Homo sapiens]
Length = 219
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/147 (55%), Positives = 108/147 (73%), Gaps = 6/147 (4%)
Query: 282 LDAHQGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIE 335
L+ +GNG+E+DFM++ R++IM+ AK+AIR ++EL TED YL+K+E
Sbjct: 52 LNELKGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVE 111
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
+++SL+ PD++VYNAGTD+L D LG L+ISP GI++RDELVF R RRVPI+M+
Sbjct: 112 RNIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMV 171
Query: 396 TSGGYLKQTARIIADSILNLADLGLIS 422
TSGGY K+TARIIADSILNL LGLI
Sbjct: 172 TSGGYQKRTARIIADSILNLFGLGLIG 198
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 8/62 (12%)
Query: 126 LEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKS 185
LEKLHPFD+ KW + N+L E K ++ ++E +E SEE LL+ HT +YL
Sbjct: 3 LEKLHPFDAGKWGKVINFLK--------EEKLLSDSMLVEAREASEEDLLVVHTRRYLNE 54
Query: 186 LK 187
LK
Sbjct: 55 LK 56
>gi|149419640|ref|XP_001518860.1| PREDICTED: histone deacetylase 11-like, partial [Ornithorhynchus
anatinus]
Length = 172
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/143 (55%), Positives = 104/143 (72%), Gaps = 6/143 (4%)
Query: 287 GNGYEKDFMNETRIFIMETCI------TSKAKEAIRCRIELAPYTEDQHYLEKIEAGLER 340
GNG+E+DFM + R++IM+ AK AI+ +IEL TED+ YL+K+E +
Sbjct: 1 GNGHERDFMYDNRVYIMDVYNRYIYPGDGFAKRAIKRKIELDWGTEDKEYLQKVEMHVAG 60
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
+L PD+++YNAGTD+L DPLG LAISPQGI++RDE+VF AR RVPI+M+TSGGY
Sbjct: 61 ALNELRPDVVIYNAGTDILDGDPLGGLAISPQGIVKRDEIVFRAARTHRVPILMVTSGGY 120
Query: 401 LKQTARIIADSILNLADLGLISR 423
K+TARIIADSILNL LGLI +
Sbjct: 121 QKRTARIIADSILNLHSLGLIDK 143
>gi|83647787|ref|YP_436222.1| deacetylase [Hahella chejuensis KCTC 2396]
gi|83635830|gb|ABC31797.1| Deacetylases, including yeast histone deacetylase and acetoin
utilization protein [Hahella chejuensis KCTC 2396]
Length = 318
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 152/310 (49%), Gaps = 18/310 (5%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
+ Y P Y+ L LHPFD+ K+ ++ L +H L + D + E
Sbjct: 5 LAYSPHYDFRLPGLAALHPFDASKYSRAWSVLREHFGEKLADITLQIND------PATTE 58
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
L +AH+ +YL SL S ++ + E L +P+ +QK L P +Y V GT+ A A+
Sbjct: 59 SLALAHSREYLASLSHSAAISRVVENSLLKWLPSSLLQKGLLTPAKYAVAGTITAAHKAI 118
Query: 233 RR-GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA---MIVDLDAHQGN 288
N+GGGFHHA G GFC ++D +L ++LL K + +A +++DLDAH+GN
Sbjct: 119 EEEAIVFNLGGGFHHAFRDHGEGFCFFSDAALAIQLLRAEKRLGSADEVLMIDLDAHRGN 178
Query: 289 GYEKDFMNETRI-------FIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERS 341
G+E ++ + F + + + L T+ + YL + L R
Sbjct: 179 GFESYIASDPMVHNFDMYNFQAYPGLHQGNPDEFPFMLPLHAGTDTEVYLNILREELPRL 238
Query: 342 LRSF-CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
P + YNAGTD+L D LG L++ G+ RD V + +P V++TSGGY
Sbjct: 239 FNHVKQPKLAFYNAGTDILKGDKLGGLSVDYNGVKARDHFVLDMLIKHNIPTVIMTSGGY 298
Query: 401 LKQTARIIAD 410
K + R+IAD
Sbjct: 299 SKDSYRLIAD 308
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 4 GTLEAGFLALRR-GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA---M 59
GT+ A A+ N+GGGFHHA G GFC ++D +L ++LL K + +A +
Sbjct: 109 GTITAAHKAIEEEAIVFNLGGGFHHAFRDHGEGFCFFSDAALAIQLLRAEKRLGSADEVL 168
Query: 60 IVDLDAHQ 67
++DLDAH+
Sbjct: 169 MIDLDAHR 176
>gi|149199017|ref|ZP_01876057.1| histone deacetylase superfamily protein [Lentisphaera araneosa
HTCC2155]
gi|149137806|gb|EDM26219.1| histone deacetylase superfamily protein [Lentisphaera araneosa
HTCC2155]
Length = 300
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 148/300 (49%), Gaps = 22/300 (7%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
+ Y+ Y+ L + HPF +K++ LW+ I + I +D EP+ +SEE
Sbjct: 4 VAYKENYS---HSLWENHPFPMEKYE----LLWRQI----LYQGIIEKDQYFEPKAISEE 52
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
+L+ H+ +Y L N +S+ V + + + + GGTLE AL
Sbjct: 53 DILLCHSSEYWNKL----NQLQLSD--KEVKKIGFPLSRDLVNRELDITGGTLELSLWAL 106
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
+NI GG HHA G G+C D ++ ++ L + I A+IVDLD HQGNG +
Sbjct: 107 ENACGLNIAGGTHHAFSDHGEGYCLLNDHAIAIRALQNRRLIKRALIVDLDVHQGNGSAE 166
Query: 293 DFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
F N+ +F + E +K KE I LA ED Y++ + L + + + PD
Sbjct: 167 IFANDASVFTLSIHGERNYPTK-KEKSDLDIALADGIEDAEYMDVLHNTLPKLIETEKPD 225
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
II Y AG DVL D G LA+S QG +RDE V ++ +P+V+ GGY K ARII
Sbjct: 226 IIFYLAGADVLAGDRFGRLALSMQGAYQRDEYVLSICQKLNIPVVVTMGGGYSKSLARII 285
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTLE AL +NI GG HHA G G+C D ++ ++ L + I A+IVDL
Sbjct: 97 GTLELSLWALENACGLNIAGGTHHAFSDHGEGYCLLNDHAIAIRALQNRRLIKRALIVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|389695472|ref|ZP_10183114.1| deacetylase, histone deacetylase/acetoin utilization protein
[Microvirga sp. WSM3557]
gi|388584278|gb|EIM24573.1| deacetylase, histone deacetylase/acetoin utilization protein
[Microvirga sp. WSM3557]
Length = 303
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 139/292 (47%), Gaps = 21/292 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIV P Y + H F +K+ + ++ K + +P+E S
Sbjct: 5 PIVSHPAYQA---VMPDGHRFPMRKYGRLAE---------IIAEKGLAPGGFAKPEEASA 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E + +AH Y+ + F + E+ + +P + + +R R GGTL A LA
Sbjct: 53 ELIALAHDRAYVDQV---FAGSVPHEIERRIGLP---MSESVVRRARASAGGTLLAARLA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L+ G S + GG HH G GFC + D+++ K L +I A+IVDLD HQG+G
Sbjct: 107 LQHGLSGSTAGGSHHGQRETGAGFCVFNDVAIAAKALHAEGAIRHALIVDLDVHQGDGTA 166
Query: 292 KDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
+E +F K + L ED YLE ++A L R L + PD
Sbjct: 167 DCLRDEPDLFTFSMHAEKNYPLRKIPSDLDVGLPDAMEDDAYLEALQAHLPRLLDAIEPD 226
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
++ +NAG D +D LG LA+S +G+ RRD+ V +AR R++P+V + GGY
Sbjct: 227 LVFFNAGVDPHRDDKLGRLALSDEGLRRRDDYVIEQARSRQIPLVAVIGGGY 278
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL A LAL+ G S + GG HH G GFC + D+++ K L +I A+IVDL
Sbjct: 98 GTLLAARLALQHGLSGSTAGGSHHGQRETGAGFCVFNDVAIAAKALHAEGAIRHALIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|373456320|ref|ZP_09548087.1| histone deacetylase superfamily [Caldithrix abyssi DSM 13497]
gi|371717984|gb|EHO39755.1| histone deacetylase superfamily [Caldithrix abyssi DSM 13497]
Length = 311
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 141/271 (52%), Gaps = 8/271 (2%)
Query: 145 WKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAV 204
+K I + LVE K +T+ NI+ P E+L + HT++YL+ L+ N +S + L AV
Sbjct: 38 FKKIRDKLVEEKLLTRKNILRPYLCKYEELRLVHTDEYLRKLQ---NPQYVSNILKLDAV 94
Query: 205 PNYFVQKCYLRPMRYHVGGTLEAGFLALRRGW-SINIGGGFHHASETKGGGFCAYADISL 263
N F + L R GGTL A AL+ + N+GGG+HHA K GFC DI++
Sbjct: 95 -NLFYESI-LEYYRAVTGGTLLATAYALKNNVPTFNLGGGYHHAHPDKAEGFCLVNDIAI 152
Query: 264 LVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFI--METCITSKAKEAIRCRIEL 321
++ Q + M++DLD HQGNG F ++ +F M + I L
Sbjct: 153 AIEKFRQLQRAKRFMVIDLDYHQGNGTLLYFKDDADVFTFSMHGDTWVEIDRPHNLDILL 212
Query: 322 APYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV 381
+D Y+ +E L L SF P ++ Y AG+DV D +G + ++ QGI+ R+ V
Sbjct: 213 PHACDDATYMTILEKELPPVLESFKPQVVFYVAGSDVYEKDAIGDMKLTRQGILERNLFV 272
Query: 382 FMKARERRVPIVMLTSGGYLKQTARIIADSI 412
+ R+RR+P+++L GGY K + + D I
Sbjct: 273 YRLVRDRRIPLIVLAGGGYGKDSWEVYYDFI 303
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGW-SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 62
GTL A AL+ + N+GGG+HHA K GFC DI++ ++ Q + M++D
Sbjct: 111 GTLLATAYALKNNVPTFNLGGGYHHAHPDKAEGFCLVNDIAIAIEKFRQLQRAKRFMVID 170
Query: 63 LDAHQ 67
LD HQ
Sbjct: 171 LDYHQ 175
>gi|149036742|gb|EDL91360.1| histone deacetylase 11 (predicted), isoform CRA_b [Rattus
norvegicus]
gi|149036743|gb|EDL91361.1| histone deacetylase 11 (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 155
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/134 (55%), Positives = 95/134 (70%), Gaps = 6/134 (4%)
Query: 295 MNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
M + R++IM+ AKEAIR ++EL TED+ YLEK+E + RSL+ PD
Sbjct: 1 MGDKRVYIMDVYNRHIYPGDRFAKEAIRRKVELEWGTEDEEYLEKVERNVRRSLQEHLPD 60
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
++VYNAGTDVL D LG L+ISP GI++RDE+VF R +PI+M+TSGGY K+TARII
Sbjct: 61 VVVYNAGTDVLEGDRLGGLSISPAGIVKRDEVVFRVVRAHDIPILMVTSGGYQKRTARII 120
Query: 409 ADSILNLADLGLIS 422
ADSILNL DLGLI
Sbjct: 121 ADSILNLHDLGLIG 134
>gi|332141953|ref|YP_004427691.1| histone deacetylase family protein [Alteromonas macleodii str.
'Deep ecotype']
gi|410862358|ref|YP_006977592.1| histone deacetylase family protein [Alteromonas macleodii AltDE1]
gi|327551975|gb|AEA98693.1| histone deacetylase family protein [Alteromonas macleodii str.
'Deep ecotype']
gi|410819620|gb|AFV86237.1| histone deacetylase family protein [Alteromonas macleodii AltDE1]
Length = 324
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 150/301 (49%), Gaps = 22/301 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+V+ P Y+ L + H F +K+ I + L + + +A+FIT P +
Sbjct: 28 PLVFHPIYSQ--LDLPERHRFPIEKYVGIRDELIRRGID---KARFIT------PSPLDF 76
Query: 172 EQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
L + +Y+++L + + A+ + + + + R V GT L
Sbjct: 77 SVLTDNYDRQYVEALTSGNLDKKAMRRI-------GFPWSQQLIERTRTAVAGTCLTASL 129
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL+ G ++N+ GG+HHA G GFC + D+ L K + +S +I +IVDLD HQG+G
Sbjct: 130 ALQHGKALNLTGGYHHAFADFGSGFCLFNDLYLAAKTMQKSSAIDNVLIVDLDVHQGDGT 189
Query: 291 EKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
K N+ IF + K+ I LA TED YL+ +E L + R F P
Sbjct: 190 AKLAENDRDIFTLSIHGEKNFPYRKQQSDIDIGLAKGTEDDEYLQTLEQALALAKRQFQP 249
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D I+Y+AG DV +ND LG L IS +G+ RD++VF A + VPI + GGY + A +
Sbjct: 250 DAIIYDAGVDVHVNDDLGHLHISTEGVYERDKIVFALAEQLGVPIAAVIGGGYQRDIAAL 309
Query: 408 I 408
+
Sbjct: 310 V 310
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LAL+ G ++N+ GG+HHA G GFC + D+ L K + +S +I +IVDL
Sbjct: 122 GTCLTASLALQHGKALNLTGGYHHAFADFGSGFCLFNDLYLAAKTMQKSSAIDNVLIVDL 181
Query: 64 DAHQ 67
D HQ
Sbjct: 182 DVHQ 185
>gi|87123802|ref|ZP_01079652.1| putative histone deacetylase/AcuC/AphA family protein
[Synechococcus sp. RS9917]
gi|86168371|gb|EAQ69628.1| putative histone deacetylase/AcuC/AphA family protein
[Synechococcus sp. RS9917]
Length = 304
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 137/297 (46%), Gaps = 26/297 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P PIVY P Y+ L H F K++ + + L +E +I D + P +
Sbjct: 2 PLPIVYHPRYST---PLPSSHRFPMAKFRLLHDLL--------LERGWIRPDAVKRPVSI 50
Query: 170 SEEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPN--YFVQKCYLRPMRYHVGGTLE 226
+ L H Y ++ + A + +PN VQ+ +L VGGTL
Sbjct: 51 ARRDLERIHDRSYHQAFSRGQLGRAEQRRI----GLPNSHALVQRTWLA-----VGGTLL 101
Query: 227 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 286
LALR G + ++ GG HHA G GFC + D ++ +L ++ M+VDLD HQ
Sbjct: 102 TARLALRHGIASHLAGGTHHAHPGYGSGFCIFNDCAVTAAVLLAEGAVKRLMVVDLDVHQ 161
Query: 287 GNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
G+G F + R+F + S K + LA T+D YL I L L
Sbjct: 162 GDGTAACFATDPRVFTLSVHAQSNFPLRKGRSDLDLPLADGTDDATYLSTIGDRLPDRLD 221
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
+ PD+++YNAG D ND LG LA+S +G++ RD LV R +P+ + GGY
Sbjct: 222 TVRPDLVLYNAGVDPHRNDRLGRLALSDEGLLHRDRLVLDACLRRNIPVATVIGGGY 278
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL LALR G + ++ GG HHA G GFC + D ++ +L ++ M+VDL
Sbjct: 98 GTLLTARLALRHGIASHLAGGTHHAHPGYGSGFCIFNDCAVTAAVLLAEGAVKRLMVVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|303290877|ref|XP_003064725.1| histone deacetylase [Micromonas pusilla CCMP1545]
gi|226453751|gb|EEH51059.1| histone deacetylase [Micromonas pusilla CCMP1545]
Length = 385
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 147/301 (48%), Gaps = 25/301 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV-S 170
PIVY P Y+ L H F +K ++ L + E + N+ +P S
Sbjct: 81 PIVYHPSYSKP--ALPTGHRFPMTVFKALYERLIR-------EGVAVPGKNLFQPARAPS 131
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISE-VCPLVAVP--NYFVQKCYLRPMRYHVGGTLEA 227
E+LL AH E Y+ + F V A+ + + +P V++ + V GT+
Sbjct: 132 REELLAAHCETYVDA----FCVGALDDGASRKIGLPWSEDLVERTL-----HEVSGTILT 182
Query: 228 GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQG 287
LAL G ++N GG HHA G GFC D+++ K + Q ++ +IVDLD HQG
Sbjct: 183 ADLALTCGMAMNTAGGTHHAHRAHGSGFCILNDLAVTAKRVLQRGAVERVLIVDLDVHQG 242
Query: 288 NGYEKDFMNETRIFIMET-CITS-KAKEAIRCR-IELAPYTEDQHYLEKIEAGLERSLRS 344
+G ++ R+F+++ C + K+A R I LA T D Y++ +E GL L
Sbjct: 243 DGTAAIVEDDDRVFVLDAHCADNFPHKKATASRDIALAKGTGDDAYMKAVEEGLREVLEE 302
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT 404
F P +++Y+AG DV D LG L+++ +G+IRR+ LV R +PI GGY
Sbjct: 303 FKPQLVLYDAGVDVHEADALGGLSLTDEGLIRREALVLDTVVGRGIPIAGFVGGGYDADV 362
Query: 405 A 405
A
Sbjct: 363 A 363
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G ++N GG HHA G GFC D+++ K + Q ++ +IVDL
Sbjct: 178 GTILTADLALTCGMAMNTAGGTHHAHRAHGSGFCILNDLAVTAKRVLQRGAVERVLIVDL 237
Query: 64 DAHQ 67
D HQ
Sbjct: 238 DVHQ 241
>gi|11291393|pir||T46431 hypothetical protein DKFZp434C0926.1 - human
gi|6807883|emb|CAB70712.1| hypothetical protein [Homo sapiens]
Length = 147
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/112 (62%), Positives = 88/112 (78%)
Query: 311 AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAIS 370
AK+AIR ++EL TED YL+K+E +++SL+ PD++VYNAGTD+L D LG L+IS
Sbjct: 15 AKQAIRRKVELEWGTEDDEYLDKVERNIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSIS 74
Query: 371 PQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLIS 422
P GI++RDELVF R RRVPI+M+TSGGY K+TARIIADSILNL LGLI
Sbjct: 75 PAGIVKRDELVFRMVRGRRVPILMVTSGGYQKRTARIIADSILNLFGLGLIG 126
>gi|333370018|ref|ZP_08462100.1| histone deacetylase [Psychrobacter sp. 1501(2011)]
gi|332968662|gb|EGK07715.1| histone deacetylase [Psychrobacter sp. 1501(2011)]
Length = 301
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 130/267 (48%), Gaps = 9/267 (3%)
Query: 145 WKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAV 204
++ I LV+ +++DN P +VSE+++L HT +Y LK +
Sbjct: 25 YRLIPERLVQEGTLSEDNFFAPSKVSEQEILTTHTAEYWDKLKTQALSRKEARAIGFEMT 84
Query: 205 PNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLL 264
P V++ RY T E A + G S+N+ GG HH+ G GFC + D+ +
Sbjct: 85 PE-LVERG-----RYIAHATYECALYAKQYGVSLNVAGGTHHSFADHGEGFCVFNDVCIA 138
Query: 265 VKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIEL 321
LL ++ +IVDLD HQGNG NE R+F+ K I+L
Sbjct: 139 SNLLLSRGEVNRILIVDLDVHQGNGNASIMANEPRVFVFSMHGEKNYPFRKPPSDLDIDL 198
Query: 322 APYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV 381
T+D+ YL ++ L R + PD+I Y + DVL D LG L+++ +G +RDE V
Sbjct: 199 PNETDDETYLNILKQTLPRLIAEHNPDLIFYQSAVDVLATDKLGKLSLTLEGCKQRDEFV 258
Query: 382 FMKARERRVPIVMLTSGGYLKQTARII 408
+A+ +PI ++ GGY ++ +++
Sbjct: 259 LSQAKAHNIPIAIVMGGGYSEEVEQVV 285
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 3 YGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 62
+ T E A + G S+N+ GG HH+ G GFC + D+ + LL ++ +IVD
Sbjct: 96 HATYECALYAKQYGVSLNVAGGTHHSFADHGEGFCVFNDVCIASNLLLSRGEVNRILIVD 155
Query: 63 LDAHQ 67
LD HQ
Sbjct: 156 LDVHQ 160
>gi|148653959|ref|YP_001281052.1| histone deacetylase superfamily protein [Psychrobacter sp. PRwf-1]
gi|148573043|gb|ABQ95102.1| histone deacetylase superfamily [Psychrobacter sp. PRwf-1]
Length = 302
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 139/299 (46%), Gaps = 20/299 (6%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
I + P ++ + + + H F +K++ I L L E +TQDN P +VSE
Sbjct: 4 IAFSP---IYLYDVPEKHRFPMQKYRLIPERL-------LAEGT-LTQDNFFAPDKVSEA 52
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
++L HT +Y LK + P V++ RY T E A
Sbjct: 53 EILTTHTPEYWDKLKTQTLPRKEARAIGFEMTPQ-LVERG-----RYIAHATYECALYAK 106
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
+ G S+N+ GG HHA G GFC + D+ + LL S +IVDLD HQGNG
Sbjct: 107 QYGVSLNVAGGTHHAFADHGEGFCVFNDVCIASNLLLSRGQASKILIVDLDVHQGNGNAS 166
Query: 293 DFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDI 349
NE R+F+ K I+L T+D YL ++ L + + PD+
Sbjct: 167 IMANEPRVFVFSMHGEKNYPFRKPPSDLDIDLPNDTDDATYLTLLKDTLPKLIAEHEPDL 226
Query: 350 IVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
I Y + DVL +D LG LA+S +G RDE V +A+ +PI ++ GGY ++ +++
Sbjct: 227 IFYQSAVDVLASDKLGKLALSLEGCKARDEFVLTQAKAHHIPIAIVMGGGYSEEVEQVV 285
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%)
Query: 1 MEYGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMI 60
+ + T E A + G S+N+ GG HHA G GFC + D+ + LL S +I
Sbjct: 94 IAHATYECALYAKQYGVSLNVAGGTHHAFADHGEGFCVFNDVCIASNLLLSRGQASKILI 153
Query: 61 VDLDAHQ 67
VDLD HQ
Sbjct: 154 VDLDVHQ 160
>gi|194386580|dbj|BAG61100.1| unnamed protein product [Homo sapiens]
Length = 155
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/134 (54%), Positives = 96/134 (71%), Gaps = 6/134 (4%)
Query: 295 MNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
M++ R++IM+ AK+AIR ++EL TED YL+K+E +++SL+ PD
Sbjct: 1 MDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIKKSLQEHLPD 60
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
++VYNAGTD+L LG L+ISP GI++RDELVF R RRVPI+M+TSGGY K+TARII
Sbjct: 61 VVVYNAGTDILEGGRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVTSGGYQKRTARII 120
Query: 409 ADSILNLADLGLIS 422
ADSILNL LGLI
Sbjct: 121 ADSILNLFGLGLIG 134
>gi|332140462|ref|YP_004426200.1| histone deacetylase family protein [Alteromonas macleodii str.
'Deep ecotype']
gi|327550484|gb|AEA97202.1| histone deacetylase family protein [Alteromonas macleodii str.
'Deep ecotype']
Length = 224
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 107/194 (55%), Gaps = 3/194 (1%)
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
R V GT LAL+ G ++N+ GG+HHA G GFC + D+ L K + +S +I
Sbjct: 17 RTAVAGTCLTASLALQHGKALNLTGGYHHAFADFGSGFCLFNDLYLAAKTMQKSSAIDNV 76
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
+IVDLD HQG+G K N+ IF + K+ I LA TED YL+ +
Sbjct: 77 LIVDLDVHQGDGTAKLAENDRDIFTLSIHGEKNFPYRKQQSDIDIGLAKGTEDDEYLQTL 136
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
E L + R F PD I+Y+AG DV +ND LG L IS +G+ RD++VF A + VPI
Sbjct: 137 EQALALAKRQFQPDAIIYDAGVDVHVNDDLGHLHISTEGVYERDKIVFALAEQLGVPIAA 196
Query: 395 LTSGGYLKQTARII 408
+ GGY + A ++
Sbjct: 197 VIGGGYQRDIAALV 210
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LAL+ G ++N+ GG+HHA G GFC + D+ L K + +S +I +IVDL
Sbjct: 22 GTCLTASLALQHGKALNLTGGYHHAFADFGSGFCLFNDLYLAAKTMQKSSAIDNVLIVDL 81
Query: 64 DAHQFS----------DYYFPSAHSIK----RKRKVEF-LKERKALEDEITSEPQESVVT 108
D HQ D + S H K RK++ + + K ED+ + E +
Sbjct: 82 DVHQGDGTAKLAENDRDIFTLSIHGEKNFPYRKQQSDIDIGLAKGTEDDEYLQTLEQALA 141
Query: 109 ------RPWPIVYRPEYNVH 122
+P I+Y +VH
Sbjct: 142 LAKRQFQPDAIIYDAGVDVH 161
>gi|343086372|ref|YP_004775667.1| histone deacetylase superfamily protein [Cyclobacterium marinum DSM
745]
gi|342354906|gb|AEL27436.1| histone deacetylase superfamily [Cyclobacterium marinum DSM 745]
Length = 300
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 122/253 (48%), Gaps = 11/253 (4%)
Query: 160 QDNIIEPQEVSEEQLLIAHTEKYLKSLK-WSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
+DN EP+ EE + H YL+ LK S + + I + + K +
Sbjct: 40 EDNFFEPEPCQEEVITAIHESLYLEKLKGLSLSKSEIRRT-------GFPLSKELVEREI 92
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
+ G++ A AL+ G +NI GG HHA + +G GFC DI++ K L I +
Sbjct: 93 QIMNGSVMASLFALKDGIGMNIAGGTHHAFKDRGEGFCLLNDIAIAAKFLLTKNEIDKVL 152
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIE 335
+VDLD HQGNG F N+ +F KE + L T+DQ YL +E
Sbjct: 153 VVDLDVHQGNGTASIFENDPEVFTFSMHGKHNYPMHKEKSDLDVPLEDQTDDQTYLSLLE 212
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
+ L + + PD I+Y +G DVL D LG L ++ QG RD+LV A+ ++PI+
Sbjct: 213 SHLPKLITRVAPDFIIYQSGVDVLATDKLGRLGLTIQGCKERDKLVLTHAKTNKIPIMCC 272
Query: 396 TSGGYLKQTARII 408
GGY + + II
Sbjct: 273 MGGGYSLKISDII 285
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ A AL+ G +NI GG HHA + +G GFC DI++ K L I ++VDL
Sbjct: 97 GSVMASLFALKDGIGMNIAGGTHHAFKDRGEGFCLLNDIAIAAKFLLTKNEIDKVLVVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|407700796|ref|YP_006825583.1| histone deacetylase family protein [Alteromonas macleodii str.
'Black Sea 11']
gi|407249943|gb|AFT79128.1| histone deacetylase family protein [Alteromonas macleodii str.
'Black Sea 11']
Length = 273
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 102/194 (52%), Gaps = 3/194 (1%)
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
R V GT LAL G ++N+ GG+HHA G GFC + D+ L K + Q+ SI
Sbjct: 66 RTAVAGTCLTAKLALEHGKALNLTGGYHHAFADFGSGFCLFNDLYLAAKTMLQTPSIENV 125
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
+IVDLD HQG+G K N+ IF + K+ I L TED YL +
Sbjct: 126 LIVDLDVHQGDGTAKLAENDRDIFTLSIHGEKNFPHRKQRSDIDIGLDKGTEDDEYLTTL 185
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
E L +R F PD I+Y+AG DV +ND LG L IS QG+ RD+ VF A VPI
Sbjct: 186 EQALTMVMRQFQPDAIIYDAGVDVHVNDDLGHLHISTQGVYERDKQVFALAESLGVPIAA 245
Query: 395 LTSGGYLKQTARII 408
+ GGY + A ++
Sbjct: 246 VIGGGYQRDIAALV 259
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 66/140 (47%), Gaps = 21/140 (15%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LAL G ++N+ GG+HHA G GFC + D+ L K + Q+ SI +IVDL
Sbjct: 71 GTCLTAKLALEHGKALNLTGGYHHAFADFGSGFCLFNDLYLAAKTMLQTPSIENVLIVDL 130
Query: 64 DAHQFS----------DYYFPSAHSIK----RKRKVEF-LKERKALEDE---ITSEPQES 105
D HQ D + S H K RK++ + + K ED+ T E +
Sbjct: 131 DVHQGDGTAKLAENDRDIFTLSIHGEKNFPHRKQRSDIDIGLDKGTEDDEYLTTLEQALT 190
Query: 106 VVTR---PWPIVYRPEYNVH 122
+V R P I+Y +VH
Sbjct: 191 MVMRQFQPDAIIYDAGVDVH 210
>gi|406597491|ref|YP_006748621.1| histone deacetylase family protein [Alteromonas macleodii ATCC
27126]
gi|407684505|ref|YP_006799679.1| histone deacetylase family protein [Alteromonas macleodii str.
'English Channel 673']
gi|406374812|gb|AFS38067.1| histone deacetylase family protein [Alteromonas macleodii ATCC
27126]
gi|407246116|gb|AFT75302.1| histone deacetylase family protein [Alteromonas macleodii str.
'English Channel 673']
Length = 300
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 101/194 (52%), Gaps = 3/194 (1%)
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
R V GT LAL G ++N+ GG+HHA G GFC + D+ L K + Q+ S+
Sbjct: 93 RTAVAGTCLTAKLALEHGKALNLTGGYHHAFADFGSGFCLFNDLYLAAKTMQQTPSVENV 152
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCR---IELAPYTEDQHYLEKI 334
+IVDLD HQG+G K N+ IF + +C I L TED YL +
Sbjct: 153 LIVDLDVHQGDGTAKLAENDRDIFTLSIHGEKNFPHRKQCSDIDIGLDKGTEDDEYLTTL 212
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
E L +R F PD I+Y+AG DV +ND LG L IS QG+ RD VF A VPI
Sbjct: 213 EQALTMVMRQFQPDAIIYDAGVDVHVNDDLGHLHISTQGVYERDTQVFALAERLGVPIAA 272
Query: 395 LTSGGYLKQTARII 408
+ GGY + A ++
Sbjct: 273 VIGGGYQRDIAALV 286
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LAL G ++N+ GG+HHA G GFC + D+ L K + Q+ S+ +IVDL
Sbjct: 98 GTCLTAKLALEHGKALNLTGGYHHAFADFGSGFCLFNDLYLAAKTMQQTPSVENVLIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|392398578|ref|YP_006435179.1| deacetylase [Flexibacter litoralis DSM 6794]
gi|390529656|gb|AFM05386.1| deacetylase, histone deacetylase/acetoin utilization protein
[Flexibacter litoralis DSM 6794]
Length = 300
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 129/253 (50%), Gaps = 9/253 (3%)
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
T++N EP +SE++++ HT +Y LK ++ + P QK R +
Sbjct: 39 TKENFFEPIPISEKKIVRVHTSEYWNKLK---TLSLTKKEIRKTGFP--LSQKLVDREII 93
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
GGT++ AL+ G S+NI GG HHA G GFC DI+L L +I+ +
Sbjct: 94 I-AGGTIQNSEFALQYGASMNIAGGTHHAFTEHGEGFCLLNDIALASYHLIDEHNINKIL 152
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIE 335
I+DLD HQGNG + F NE R+F KE IEL T+D+ YL+ ++
Sbjct: 153 IIDLDVHQGNGTAEIFQNEKRVFTFSMHGEKNYPHKKENSDLDIELKDGTDDKTYLKVLK 212
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
L + ++ P I + AG DVL D LG L ++ QG RD+ VF ++++ +PI +
Sbjct: 213 ETLPKLIQEQKPQFIFFQAGVDVLATDKLGRLGMTLQGCRERDKFVFQESKKNNIPICVS 272
Query: 396 TSGGYLKQTARII 408
GGY + + ++
Sbjct: 273 MGGGYSPKISDLV 285
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++ AL+ G S+NI GG HHA G GFC DI+L L +I+ +I+DL
Sbjct: 97 GTIQNSEFALQYGASMNIAGGTHHAFTEHGEGFCLLNDIALASYHLIDEHNINKILIIDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|375013620|ref|YP_004990608.1| deacetylase [Owenweeksia hongkongensis DSM 17368]
gi|359349544|gb|AEV33963.1| deacetylase, histone deacetylase/acetoin utilization protein
[Owenweeksia hongkongensis DSM 17368]
Length = 300
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 120/253 (47%), Gaps = 9/253 (3%)
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
++DN P+++SE+Q+L HT +Y + LK + P ++ +
Sbjct: 39 SEDNFFTPEKLSEKQILRTHTAEYWEKLKTNSLTRQEERKTGFPLTPKLVEREITI---- 94
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
GT++ AL G S+NI GG HHA G GFC DI L L + +
Sbjct: 95 --CQGTIDNAKHALEHGISMNIAGGTHHAYANSGEGFCLLNDICLASHWLLDNNLAKQIL 152
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIE 335
+VDLD HQGNG K NE+R+F KE+ IEL TED YL+ +E
Sbjct: 153 VVDLDVHQGNGTAKIMENESRVFTFSMHGEKNYPMHKESSDLDIELPDGTEDSLYLQTLE 212
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
L R + PD I + +G D+L D LG L +S G +RD+ V ++ +P+ +
Sbjct: 213 NNLPRLIDEVQPDFIFFQSGVDILATDKLGRLGLSMDGCKQRDKFVLESCKQNNIPVAVN 272
Query: 396 TSGGYLKQTARII 408
GGY + + I+
Sbjct: 273 IGGGYSHKLSDIV 285
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++ AL G S+NI GG HHA G GFC DI L L + ++VDL
Sbjct: 97 GTIDNAKHALEHGISMNIAGGTHHAYANSGEGFCLLNDICLASHWLLDNNLAKQILVVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|410664778|ref|YP_006917149.1| deacetylase [Simiduia agarivorans SA1 = DSM 21679]
gi|409027135|gb|AFU99419.1| deacetylase [Simiduia agarivorans SA1 = DSM 21679]
Length = 279
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 130/266 (48%), Gaps = 18/266 (6%)
Query: 148 IFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP-- 205
+ +YL + N P ++ QL +AH E+Y+ + A + +P
Sbjct: 7 LHSYLQQQGIAQPTNTFRPGKIKHSQLALAHCEQYVTAFASGLLDAQAQR---RLGLPWS 63
Query: 206 NYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLV 265
V++ ++ P GTL A ALR G + ++ GG HHA GFC + D+++
Sbjct: 64 EGLVRRTFISP-----AGTLLAAHFALREGIACHLAGGTHHAHRDFASGFCVFNDLAVTA 118
Query: 266 KLLFQSKSISTAMIVDLDAHQGNGYEKDFMN-----ETRIFIMETCITSKAKEAIRCRIE 320
++L + + + ++ DLD HQG+G + + + + KA+ + +
Sbjct: 119 RVLLEQQLATRVLVFDLDVHQGDGTARILADVPGTYTCSVHCEKNFPVRKAQSDLDVNLP 178
Query: 321 LAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDEL 380
+A D YL+ + L R LR + PD I+Y+AG DV +DPLG L IS QGI RD L
Sbjct: 179 VA--MSDDGYLQVVSDTLMRLLRDYQPDFILYDAGVDVFADDPLGRLNISLQGIAARDAL 236
Query: 381 VFMKARERRVPIVMLTSGGYLK-QTA 405
V AR+R +PI + GGY K QTA
Sbjct: 237 VLSMARDRNIPIATVIGGGYDKDQTA 262
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL A ALR G + ++ GG HHA GFC + D+++ ++L + + + ++ DL
Sbjct: 76 GTLLAAHFALREGIACHLAGGTHHAHRDFASGFCVFNDLAVTARVLLEQQLATRVLVFDL 135
Query: 64 DAHQ 67
D HQ
Sbjct: 136 DVHQ 139
>gi|148242804|ref|YP_001227961.1| histone deacetylase family protein [Synechococcus sp. RCC307]
gi|147851114|emb|CAK28608.1| Histone deacetylase family protein [Synechococcus sp. RCC307]
Length = 306
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 134/293 (45%), Gaps = 22/293 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ L H F K++ + L + + + +P
Sbjct: 6 PLVYHPLYSA---PLPSSHRFPMAKFRQLRQCL--------ADKGLAQEQQVHQPLPCPR 54
Query: 172 EQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
L + H +Y ++ + + A + P VQ+ +L VGGTL L
Sbjct: 55 RWLELVHPRRYHQAFARGELDRQAQRRIGLPATQP--LVQRTWLS-----VGGTLRTAQL 107
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G + ++ GG HHA G GFC + DI++ +L Q ++ M+VDLD HQG+
Sbjct: 108 ALEHGMACHLAGGTHHAFPDYGSGFCIFNDIAVTASVLLQQGLVNKLMVVDLDVHQGDAT 167
Query: 291 EKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
F E R+F S K++ + LA EDQ YL+ + L L P
Sbjct: 168 AAIFTGEPRVFTFSAHAASNFPSRKQSSDLDLPLADGLEDQAYLQSVGDVLPALLDQQQP 227
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
D+++YNAG D D LG LA+S QG+++RD LVF R +P+ + GGY
Sbjct: 228 DLVLYNAGVDPHRADRLGKLALSDQGLLQRDHLVFDACLRRNIPVASVIGGGY 280
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL LAL G + ++ GG HHA G GFC + DI++ +L Q ++ M+VDL
Sbjct: 100 GTLRTAQLALEHGMACHLAGGTHHAFPDYGSGFCIFNDIAVTASVLLQQGLVNKLMVVDL 159
Query: 64 DAHQ 67
D HQ
Sbjct: 160 DVHQ 163
>gi|168701002|ref|ZP_02733279.1| Deacetylases, including yeast histone deacetylase and acetoin
utilization protein [Gemmata obscuriglobus UQM 2246]
Length = 384
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 141/296 (47%), Gaps = 22/296 (7%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
+VY YN+ F LE+LHPFDS+K+ +N + + E + + + P+ S
Sbjct: 3 LVYTRRYNIGFLGLERLHPFDSRKYGRAWNAVGRE------ERRLRNRAWMGVPRPASFA 56
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
L H YL L+ S +A+ E+ + +P + V+ LRPMR+ V G+L AG AL
Sbjct: 57 DLSAVHDPAYLDRLRDSKVLASALELPFIRRLPAWAVRWTVLRPMRWAVAGSLVAGRAAL 116
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST---AMIVDLDAHQGNG 289
G S+N+ GG+HHA +G GFC + D++ L+ L ++ + LDAHQGNG
Sbjct: 117 TDGLSVNLSGGYHHAKPDRGEGFCVFNDVAYLIHRLRTEGRLAADGRVAYIGLDAHQGNG 176
Query: 290 YEKDFMNETRIFIMET-------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSL 342
F ++TR+ + + A+ I C + L YL +E L L
Sbjct: 177 VSLHFRSDTRVLMYDAYNPRIYPSYDHGARARIDCPVPLPANCTGAEYLRVLELSLPGFL 236
Query: 343 ----RSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
RS + V NAGTDV D LG P +R DE V ++ R VP V
Sbjct: 237 DSVGRSGRVALAVDNAGTDVYAGDALG-GPDRPGADLRFDEAVHGRS-HRVVPAVQ 290
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST---AMI 60
G+L AG AL G S+N+ GG+HHA +G GFC + D++ L+ L ++
Sbjct: 107 GSLVAGRAALTDGLSVNLSGGYHHAKPDRGEGFCVFNDVAYLIHRLRTEGRLAADGRVAY 166
Query: 61 VDLDAHQ 67
+ LDAHQ
Sbjct: 167 IGLDAHQ 173
>gi|93006940|ref|YP_581377.1| histone deacetylase superfamily protein [Psychrobacter
cryohalolentis K5]
gi|92394618|gb|ABE75893.1| histone deacetylase superfamily [Psychrobacter cryohalolentis K5]
Length = 305
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 120/260 (46%), Gaps = 9/260 (3%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQK 211
L+ K I+ +N P +SE+++L HT Y LK + P V++
Sbjct: 32 LLAEKTISANNFFAPTRLSEDEILTTHTADYWYQLKTQTLPRKEARAIGFEMTPE-LVER 90
Query: 212 CYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS 271
RY T E A + G ++N+ GG HHA G GFC + D+ + LL
Sbjct: 91 G-----RYIAHATYECALYAQQYGVAMNVAGGTHHAFSDHGEGFCVFNDVCIASNLLLNR 145
Query: 272 KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQ 328
++VDLD HQGNG NE R+FI K+ IEL T D+
Sbjct: 146 GQAQKILVVDLDVHQGNGNASIMANEPRVFIFSMHGAKNYPFRKQVSDLDIELDNDTGDE 205
Query: 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER 388
YL+ +E L R + PD+I Y + DVL D LG L ++ +G RDE V +A+
Sbjct: 206 QYLQILEDTLPRLISDVAPDMIFYQSAVDVLATDKLGKLGLTIEGCKARDEYVLRQAKAA 265
Query: 389 RVPIVMLTSGGYLKQTARII 408
++PI ++ GGY + ++
Sbjct: 266 KIPIAIVMGGGYSEDIEDVV 285
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 3 YGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 62
+ T E A + G ++N+ GG HHA G GFC + D+ + LL ++VD
Sbjct: 96 HATYECALYAQQYGVAMNVAGGTHHAFSDHGEGFCVFNDVCIASNLLLNRGQAQKILVVD 155
Query: 63 LDAHQ 67
LD HQ
Sbjct: 156 LDVHQ 160
>gi|260434634|ref|ZP_05788604.1| histone deacetylase family protein [Synechococcus sp. WH 8109]
gi|260412508|gb|EEX05804.1| histone deacetylase family protein [Synechococcus sp. WH 8109]
Length = 305
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 131/294 (44%), Gaps = 20/294 (6%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P+VY P Y+ L H F K++ + L +E + D + P +
Sbjct: 2 PLPVVYHPHYSA---PLPSTHRFPMAKFRLLHQLL--------LEQGVVQADEVHRPLSI 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
+ L H +Y ++ L A VQ+ +L VGGTL
Sbjct: 51 ARRDLESVHPRRYHEAFSRDRLTRPEQRRIGLPAT-RPLVQRTWLA-----VGGTLLTAR 104
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL+RG + ++ GG HHA G GFC + D ++ ++L + + +IVDLD HQG+G
Sbjct: 105 LALKRGLASHLAGGTHHAHPGFGSGFCIFNDCAVAARVLLGTGEVRRILIVDLDVHQGDG 164
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
F ++ R+ + S K I LA T D YL I L +L +
Sbjct: 165 SAACFQHDPRVTTLSVHAASNFPLRKVDGDIDIPLADGTNDDDYLAAIADRLPDALDTIA 224
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
PD+++YNAG D +D LG L +S G+ RD LV RR+P + GGY
Sbjct: 225 PDLVLYNAGVDPHRDDRLGRLDLSDAGLNMRDRLVLDACLRRRIPTATVIGGGY 278
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL LAL+RG + ++ GG HHA G GFC + D ++ ++L + + +IVDL
Sbjct: 98 GTLLTARLALKRGLASHLAGGTHHAHPGFGSGFCIFNDCAVAARVLLGTGEVRRILIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|407688433|ref|YP_006803606.1| histone deacetylase family protein [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407291813|gb|AFT96125.1| histone deacetylase family protein [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 300
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 141/301 (46%), Gaps = 22/301 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEA-KFITQDNIIEPQEVS 170
P+V+ P Y+ L + H F +K+ I + L N VEA +F+T P V
Sbjct: 4 PLVFHPIYSQ--LDLPERHRFPIEKYVGIRDEL----LNRGVEASRFVT------PSPVD 51
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
L + Y+ +L A + + P + Q+ R R V GT L
Sbjct: 52 LSFLTAYYDPDYVDALSTG---ALDKKAMRRIGFP--WSQQLIER-TRTAVAGTCLTAKL 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G ++N+ GG+HHA G GFC + D+ L K + Q+ S+ +IVDLD HQG+G
Sbjct: 106 ALEHGKALNLTGGYHHAFADFGSGFCLFNDLYLAAKTMQQTPSVENVLIVDLDVHQGDGT 165
Query: 291 EKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
K N+ IF + K+ I L T D YL +E L +R F P
Sbjct: 166 AKLAENDRDIFTLSIHGEKNFPHRKQRSDIDIGLDKGTADDEYLTTLEQALTMVMRQFQP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D I+Y+AG DV +ND LG L IS QG+ RD VF A VPI + GGY + A +
Sbjct: 226 DAIIYDAGVDVHVNDDLGHLHISTQGVYERDTQVFALAERLGVPIAAVIGGGYQRDIAAL 285
Query: 408 I 408
+
Sbjct: 286 V 286
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 21/140 (15%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LAL G ++N+ GG+HHA G GFC + D+ L K + Q+ S+ +IVDL
Sbjct: 98 GTCLTAKLALEHGKALNLTGGYHHAFADFGSGFCLFNDLYLAAKTMQQTPSVENVLIVDL 157
Query: 64 DAHQFS----------DYYFPSAHSIK----RKRK--VEFLKERKALEDE--ITSEPQES 105
D HQ D + S H K RK++ ++ ++ +DE T E +
Sbjct: 158 DVHQGDGTAKLAENDRDIFTLSIHGEKNFPHRKQRSDIDIGLDKGTADDEYLTTLEQALT 217
Query: 106 VVTR---PWPIVYRPEYNVH 122
+V R P I+Y +VH
Sbjct: 218 MVMRQFQPDAIIYDAGVDVH 237
>gi|408674651|ref|YP_006874399.1| histone deacetylase superfamily [Emticicia oligotrophica DSM 17448]
gi|387856275|gb|AFK04372.1| histone deacetylase superfamily [Emticicia oligotrophica DSM 17448]
Length = 300
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 129/253 (50%), Gaps = 9/253 (3%)
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
T++N P V + +L H E+Y L N++ ++ + P + + ++
Sbjct: 39 TEENFFSPTVVDKRWVLGVHNEQYFNDL---LNLSIDPKMERRIGFP---ISEMLVKREL 92
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
GT++ AL+ G S+NI GG HHA KG GFC D+++ L +++ + +
Sbjct: 93 IITQGTIDCCHYALQYGISMNIAGGTHHAYSDKGEGFCLLNDVAVAANYLLENQIVKKVL 152
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIE 335
++DLD HQGNG + F E R+F KE IEL Y +D+ YL +
Sbjct: 153 VIDLDVHQGNGTAEIFQQEPRVFTFSMHGKENYPLKKEISDLDIELPTYCKDEDYLNILY 212
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
L R + P+ + Y +G D+L +D LG L++S +G RRDE VF +A + ++PIV+
Sbjct: 213 DTLPRLIEVEKPEFLFYISGVDILASDKLGKLSVSMEGCRRRDEFVFEQAIKHKLPIVVS 272
Query: 396 TSGGYLKQTARII 408
GGY + A I+
Sbjct: 273 MGGGYSPRIADIV 285
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++ AL+ G S+NI GG HHA KG GFC D+++ L +++ + +++DL
Sbjct: 97 GTIDCCHYALQYGISMNIAGGTHHAYSDKGEGFCLLNDVAVAANYLLENQIVKKVLVIDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|16127878|ref|NP_422442.1| histone deacetylase [Caulobacter crescentus CB15]
gi|221236699|ref|YP_002519136.1| deacetylase [Caulobacter crescentus NA1000]
gi|13425404|gb|AAK25610.1| histone deacetylase family protein [Caulobacter crescentus CB15]
gi|220965872|gb|ACL97228.1| deacetylase [Caulobacter crescentus NA1000]
Length = 304
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 150/307 (48%), Gaps = 22/307 (7%)
Query: 107 VTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFIT-QDNIIE 165
++ P PIV+ P + ++ H F K+ + L+EA+ + D
Sbjct: 1 MSAPPPIVHHPAFRA---EMPAGHRFPMDKFSRL---------AALLEAERVAGPDGFAR 48
Query: 166 PQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTL 225
P+ V E L +AH+E Y++ + ++ ++ + +PN + R R GGTL
Sbjct: 49 PEPVDVETLCLAHSEDYVRGV---IELSLPPDIVRRIGMPN--TESVATR-ARAATGGTL 102
Query: 226 EAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAH 285
A LAL RG + N GG HHA+ G GFC + D+++ + L +I A++VDLD H
Sbjct: 103 LAARLALERGIACNTAGGSHHAAADAGAGFCVFNDVAVAARRLLAEGAIGKALVVDLDVH 162
Query: 286 QGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSL 342
QG+G + F N+ +F K + IEL+ T+D YL K+EA L L
Sbjct: 163 QGDGTARIFENDPSVFTFSMHAEKNFPHRKASSDLDIELSDGTDDGAYLAKLEAILPALL 222
Query: 343 RSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402
S PDI+ +NAG D +D LG LA++ +G+ RR+ V +P+V + GGY
Sbjct: 223 ISVRPDIVFFNAGVDPHADDKLGRLALTDEGLARREAYVLGACLSSEIPVVGVIGGGYDA 282
Query: 403 QTARIIA 409
R+ A
Sbjct: 283 DIDRLAA 289
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL A LAL RG + N GG HHA+ G GFC + D+++ + L +I A++VDL
Sbjct: 100 GTLLAARLALERGIACNTAGGSHHAAADAGAGFCVFNDVAVAARRLLAEGAIGKALVVDL 159
Query: 64 DAHQ 67
D HQ
Sbjct: 160 DVHQ 163
>gi|410619155|ref|ZP_11330068.1| histone deacetylase family protein [Glaciecola polaris LMG 21857]
gi|410161283|dbj|GAC34206.1| histone deacetylase family protein [Glaciecola polaris LMG 21857]
Length = 299
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 145/302 (48%), Gaps = 24/302 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+V+ P Y+ L H F +K++ I++ L I +PQ +S
Sbjct: 4 PLVFHPIYSQ--LDLPHRHRFPIEKYQAIYDRLID---------SGIPSSQFHQPQALSP 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
QL ++ +Y+ +L S+ + P + + R + V GT+ LA
Sbjct: 53 TQLARVYSPEYVNALTQG---VLESKAMRRIGFP--WSAQLIERSLTA-VAGTVLTSSLA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
+ G ++N+ GG+HHA G GFC + D+ L + Q+ +I +I D D HQG+G
Sbjct: 107 IEHGKALNLTGGYHHAFANFGSGFCLFNDLYLAALNMLQTPNIDKVLIFDCDVHQGDGTA 166
Query: 292 KDFMNETRIFIMETCITSKAKEAIRCRIE-----LAPYTEDQHYLEKIEAGLERSLRSFC 346
K N ++F + I + +R +I LA T D YLE +E+ L + +F
Sbjct: 167 KLAANNPKVFTVS--IHGEKNFPLRKQISDMDFALAKGTSDNEYLEVVESALNLAFTAFQ 224
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
PD ++Y+AG D+ +ND LG L IS QG+ RD +VF + RVP+ + GGY +
Sbjct: 225 PDAVIYDAGVDIHINDDLGHLHISTQGVYARDCMVFDACAKHRVPVAAVIGGGYQRDINA 284
Query: 407 II 408
++
Sbjct: 285 LV 286
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LA+ G ++N+ GG+HHA G GFC + D+ L + Q+ +I +I D
Sbjct: 98 GTVLTSSLAIEHGKALNLTGGYHHAFANFGSGFCLFNDLYLAALNMLQTPNIDKVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|406663291|ref|ZP_11071352.1| Acetoin utilization protein AcuC [Cecembia lonarensis LW9]
gi|405552606|gb|EKB47991.1| Acetoin utilization protein AcuC [Cecembia lonarensis LW9]
Length = 300
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 126/254 (49%), Gaps = 9/254 (3%)
Query: 158 ITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPM 217
+ N EP+ + E +L H +Y + L+ N++ P + K +
Sbjct: 38 VNSSNFFEPEALDREWILNTHHAEYFQKLE---NLSLSKSEIRRTGFP---LSKALVERE 91
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
+ + G+++A AL+ G ++NI GG HHA +G GFC DI++ L + K
Sbjct: 92 IHIMHGSVQAALFALQYGVAMNIAGGTHHAFSDRGEGFCLLNDIAITANYLLEKKLAGQI 151
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
++VDLD HQGNG + F E+++F + KE I L +D YL+ +
Sbjct: 152 LVVDLDVHQGNGTAEIFRQESKVFTFSMHGAANYPMHKEKSDLDIGLPDGIDDATYLDIL 211
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
+ LE + PD I++ +G DVL +D LG L +S QG RD+ V A+ RVPI+
Sbjct: 212 DTNLEPLMDQVVPDFIIFQSGVDVLASDKLGRLGLSIQGCKERDKRVLESAKRHRVPIMC 271
Query: 395 LTSGGYLKQTARII 408
GGY ++ ++II
Sbjct: 272 CMGGGYSQKISQII 285
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 3 YGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 62
+G+++A AL+ G ++NI GG HHA +G GFC DI++ L + K ++VD
Sbjct: 96 HGSVQAALFALQYGVAMNIAGGTHHAFSDRGEGFCLLNDIAITANYLLEKKLAGQILVVD 155
Query: 63 LDAHQ 67
LD HQ
Sbjct: 156 LDVHQ 160
>gi|295691473|ref|YP_003595166.1| histone deacetylase [Caulobacter segnis ATCC 21756]
gi|295433376|gb|ADG12548.1| Histone deacetylase [Caulobacter segnis ATCC 21756]
Length = 304
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 139/302 (46%), Gaps = 22/302 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFIT-QDNIIEPQEVS 170
PIV+ P + ++ H F K+ + L EA+ + D P+ V
Sbjct: 6 PIVHHPAFRA---EMPAGHRFPMDKFSRLAAVL---------EAEGVPGADGFARPEPVD 53
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
E L +AH E Y++ + ++ EV + +PN + R R GGTL A L
Sbjct: 54 VETLRLAHNEDYVRGV---IELSLPPEVVRRIGLPN--TESVATR-ARAATGGTLLAARL 107
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL RG + N GG HHAS G GFC + D+++ + L + ++VDLD HQG+G
Sbjct: 108 ALERGIACNTAGGSHHASAESGAGFCVFNDVAVAARRLQAEGRVGQVLVVDLDVHQGDGT 167
Query: 291 EKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ F ++ +F K +ELA D+ YL K+ L L S P
Sbjct: 168 ARIFEDDPSVFTFSMHAEKNFPHRKATSDLDVELADGMGDEDYLGKLAEILPALLSSVRP 227
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
DI+ +NAG D +D LG L+++ +G+ RR+ V +P+V + GGY R+
Sbjct: 228 DIVFFNAGVDPHADDKLGRLSLTDEGLGRREAYVLGACLALEIPLVGVIGGGYDADIDRL 287
Query: 408 IA 409
A
Sbjct: 288 AA 289
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL A LAL RG + N GG HHAS G GFC + D+++ + L + ++VDL
Sbjct: 100 GTLLAARLALERGIACNTAGGSHHASAESGAGFCVFNDVAVAARRLQAEGRVGQVLVVDL 159
Query: 64 DAHQ 67
D HQ
Sbjct: 160 DVHQ 163
>gi|400288975|ref|ZP_10791007.1| histone deacetylase superfamily protein [Psychrobacter sp. PAMC
21119]
Length = 305
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 118/254 (46%), Gaps = 9/254 (3%)
Query: 158 ITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPM 217
I+ N P +SEE++L HT Y LK E P+ + + + +
Sbjct: 38 ISMVNFFAPARLSEEEILTTHTMDYWYKLKTQ--TLPRKEARPI----GFEMTEALVDRG 91
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
R+ T E A + G ++N+ GG HHA G GFC + D+ + LL
Sbjct: 92 RHIAHATYECALYAQQYGVAMNVAGGTHHAFADHGEGFCVFNDVCIASNLLLNRGQAQKI 151
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
++VDLD HQGNG NE R+F+ KE IELA T D YL+ +
Sbjct: 152 LVVDLDVHQGNGNASIMANEPRVFVFSMHGAKNYPFRKEISDLDIELANNTGDAEYLQIL 211
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
E L R + F PD+I Y + DVL D LG L ++ G RDE V +A+ ++P+ +
Sbjct: 212 EETLPRLITEFAPDMIFYQSAVDVLATDKLGKLGLTQAGCKARDEYVLRQAKAAKIPVAI 271
Query: 395 LTSGGYLKQTARII 408
+ GGY + ++
Sbjct: 272 VMGGGYSEDIEDVV 285
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 3 YGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 62
+ T E A + G ++N+ GG HHA G GFC + D+ + LL ++VD
Sbjct: 96 HATYECALYAQQYGVAMNVAGGTHHAFADHGEGFCVFNDVCIASNLLLNRGQAQKILVVD 155
Query: 63 LDAHQ 67
LD HQ
Sbjct: 156 LDVHQ 160
>gi|194289418|ref|YP_002005325.1| histone deacetylase [Cupriavidus taiwanensis LMG 19424]
gi|193223253|emb|CAQ69258.1| Histone deacetylase [Cupriavidus taiwanensis LMG 19424]
Length = 314
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 139/296 (46%), Gaps = 22/296 (7%)
Query: 119 YNVHF-FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIA 177
Y HF L H F +K+ + + + + + E ++ LL+A
Sbjct: 5 YADHFVLPLPPGHRFPMRKYSMLRDAVSAQVPGL----------RLSEAPRAGDDALLLA 54
Query: 178 HTEKYLKSLK-WSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGW 236
HT +Y+++ + + A E+ + + + R G T+EA ALR G
Sbjct: 55 HTAEYVEAASAGTLDAARQREI-------GFPWSEAMVERSRRSAGATIEACRSALREGI 107
Query: 237 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMN 296
++N+ GG HHA KGGGFC + D ++ ++L + ++ ++DLD HQGNG
Sbjct: 108 AVNLAGGTHHAYADKGGGFCVFNDAAIAARVLQRDGAVRRVAVIDLDVHQGNGTASILHG 167
Query: 297 ETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYN 353
+ +F + KEA + L +D+ Y + ++A L+ F PD+++Y
Sbjct: 168 DPSVFTLSLHGEKNYPFRKEASDLDVGLPDGCDDETYAQALQAALDTLFSRFEPDLLIYL 227
Query: 354 AGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIA 409
AG D D LG L ++ G+ RRD LVF A+ RR+P+ + +GGY Q +A
Sbjct: 228 AGADPHEGDRLGRLKLTMAGLARRDGLVFDAAQARRLPVAVTMAGGYGNQIEDTVA 283
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
T+EA ALR G ++N+ GG HHA KGGGFC + D ++ ++L + ++ ++DLD
Sbjct: 95 TIEACRSALREGIAVNLAGGTHHAYADKGGGFCVFNDAAIAARVLQRDGAVRRVAVIDLD 154
Query: 65 AHQ 67
HQ
Sbjct: 155 VHQ 157
>gi|90420420|ref|ZP_01228327.1| putative histone deacetylase protein [Aurantimonas manganoxydans
SI85-9A1]
gi|90335148|gb|EAS48901.1| putative histone deacetylase protein [Aurantimonas manganoxydans
SI85-9A1]
Length = 300
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 132/299 (44%), Gaps = 24/299 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P PI++ P ++ F + H F K+ + L VE + EP
Sbjct: 2 PLPIIHHPAFDADF---DAAHRFPMSKFSRLAEIL--------VEDGLVAPGGYHEPAPA 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
+ L +AH Y+ + +S + + A+ +K LR R GGT+
Sbjct: 51 PQNWLRLAHDPLYVDQVLFSAVPPQMEK-----AIGFRVDEKVALR-SRCATGGTVLTAH 104
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL G + N GG HHA+ G GF + D+++ LL +IVD D HQG+G
Sbjct: 105 LALVEGLACNTAGGSHHAARDCGAGFSVFNDVAVAASLLLADGDAGRVLIVDCDVHQGDG 164
Query: 290 YEKDFMNETRIFIME-----TCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRS 344
+ F NE R+F + KA+ + + LA T D YL+ + L LR
Sbjct: 165 TARIFENERRVFTLSLHGARNYPVRKAQSDL--DVPLADGTGDADYLDALVPALAEGLRR 222
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PDI+ YNAG D +D LG LA+S G+ RD V R+ +P+ + GGY +
Sbjct: 223 SLPDIVFYNAGVDPHEDDRLGRLALSDAGLAERDRTVIGTCRDVGIPVACVIGGGYSRD 281
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G + N GG HHA+ G GF + D+++ LL +IVD
Sbjct: 98 GTVLTAHLALVEGLACNTAGGSHHAARDCGAGFSVFNDVAVAASLLLADGDAGRVLIVDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|404493709|ref|YP_006717815.1| histone deacetylase family protein [Pelobacter carbinolicus DSM
2380]
gi|77545744|gb|ABA89306.1| histone deacetylase family protein [Pelobacter carbinolicus DSM
2380]
Length = 299
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 142/296 (47%), Gaps = 23/296 (7%)
Query: 119 YNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAH 178
++ H F L + H F + K+ + L + + A + +N+ P+ VS+ L AH
Sbjct: 6 FDQHTFFLPEKHRFPASKY----SMLRQRVLT----ANVVPPENMRTPEPVSDADLHRAH 57
Query: 179 TEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSI 238
T YL + A + L P VQ+ ++Y G T+ AL G +
Sbjct: 58 TGDYLHRFEHGLLTKAEIRLIGLPWSPE-LVQR-----VKYTAGATVAVCRHALDDGVGL 111
Query: 239 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNET 298
++GGG HHA G G+C Y D+ + + L S+ +++D D HQGNG + ++
Sbjct: 112 SLGGGTHHACSDHGQGYCLYNDVVVAARALQAEGSVRRVLVIDCDVHQGNGTAETTTGDS 171
Query: 299 RIFIMETCITSKAKEAIRCRIE------LAPYTEDQHYLEKIEAGLERSLRSFCPDIIVY 352
IF T K C+I L T D+ YL ++ L+ +L PD+ +Y
Sbjct: 172 SIF---TFSIHGEKNFPYCKIPGDLDVGLPDGTGDEAYLRALDEALDIALSRSRPDLAIY 228
Query: 353 NAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
AG DV ND LG LA++ GI RRDE V K RE +P+ ++ +GGY + ++++
Sbjct: 229 LAGVDVHENDRLGRLALTRSGIGRRDESVLSKCRESTIPVGVVMAGGYSRDLSKMV 284
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL G +++GGG HHA G G+C Y D+ + + L S+ +++D D HQ
Sbjct: 104 ALDDGVGLSLGGGTHHACSDHGQGYCLYNDVVVAARALQAEGSVRRVLVIDCDVHQ 159
>gi|113867397|ref|YP_725886.1| histone deacetylase family deacetylase [Ralstonia eutropha H16]
gi|113526173|emb|CAJ92518.1| Deacetylase, histone deacetylase family [Ralstonia eutropha H16]
Length = 369
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 137/296 (46%), Gaps = 22/296 (7%)
Query: 119 YNVHF-FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIA 177
Y HF L H F +K+ + + + + ++E ++ LL+A
Sbjct: 68 YADHFVLPLPPGHRFPMRKYSMLRDAVAAQVPGL----------RLVEAPRAGDDALLLA 117
Query: 178 HTEKYLKSLK-WSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGW 236
HT Y+++ + + A E+ + + + R G T+EA ALR G
Sbjct: 118 HTPGYVQAASAGTLDAARQREI-------GFPWSEAMVERSRRSAGATIEACRTALREGI 170
Query: 237 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMN 296
++N+ GG HHA KGGGFC + D ++ ++L + ++ +VDLD HQGNG
Sbjct: 171 AVNLAGGTHHAYADKGGGFCVFNDAAIAARVLQRDGAVRRVAVVDLDVHQGNGTASILQG 230
Query: 297 ETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYN 353
+ +F + KEA + L +D Y + ++A L+ F P++I+Y
Sbjct: 231 DPSVFTLSLHGEKNYPFRKEASDLDVGLPDGCDDDTYAQALQAALDTLFSRFDPELIIYL 290
Query: 354 AGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIA 409
AG D D LG L ++ G+ RRD LVF A R++P+ + +GGY Q +A
Sbjct: 291 AGADPHEGDRLGRLRLTLAGLARRDRLVFDAAHARQLPVAVAMAGGYGNQIEDTVA 346
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
T+EA ALR G ++N+ GG HHA KGGGFC + D ++ ++L + ++ +VDLD
Sbjct: 158 TIEACRTALREGIAVNLAGGTHHAYADKGGGFCVFNDAAIAARVLQRDGAVRRVAVVDLD 217
Query: 65 AHQ 67
HQ
Sbjct: 218 VHQ 220
>gi|339325544|ref|YP_004685237.1| deacetylase [Cupriavidus necator N-1]
gi|338165701|gb|AEI76756.1| deacetylase histone deacetylase family [Cupriavidus necator N-1]
Length = 352
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 137/296 (46%), Gaps = 22/296 (7%)
Query: 119 YNVHF-FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIA 177
Y HF L H F +K+ + + + + ++E ++ LL+A
Sbjct: 51 YADHFVLPLPPGHRFPMRKYSMLRDAVAAQVPGL----------RLVEAPRAGDDALLLA 100
Query: 178 HTEKYLKSLK-WSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGW 236
HT Y+++ + + A E+ + + + R G T+EA ALR G
Sbjct: 101 HTPGYVQAASTGTLDAARQREI-------GFPWSEAMVERSRRSAGATIEACRTALREGV 153
Query: 237 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMN 296
++N+ GG HHA KGGGFC + D ++ ++L + ++ +VDLD HQGNG
Sbjct: 154 AVNLAGGTHHAYADKGGGFCVFNDAAIAARVLQRDGAVRRVAVVDLDVHQGNGTASILQG 213
Query: 297 ETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYN 353
+ +F + KEA + L +D Y + ++A L+ F P++++Y
Sbjct: 214 DPSVFTLSLHGEKNYPFRKEASNLDVGLPDGCDDDTYAQALQAALDTLFSRFDPELLIYL 273
Query: 354 AGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIA 409
AG D D LG L ++ G+ RRD LVF A R++P+ + +GGY Q +A
Sbjct: 274 AGADPHEGDRLGRLRLTLAGLARRDRLVFDAAHARQLPVAVAMAGGYGNQIEDTVA 329
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
T+EA ALR G ++N+ GG HHA KGGGFC + D ++ ++L + ++ +VDLD
Sbjct: 141 TIEACRTALREGVAVNLAGGTHHAYADKGGGFCVFNDAAIAARVLQRDGAVRRVAVVDLD 200
Query: 65 AHQ 67
HQ
Sbjct: 201 VHQ 203
>gi|78213287|ref|YP_382066.1| histone deacetylase/AcuC/AphA family protein [Synechococcus sp.
CC9605]
gi|78197746|gb|ABB35511.1| putative histone deacetylase/AcuC/AphA family protein
[Synechococcus sp. CC9605]
Length = 316
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 131/294 (44%), Gaps = 20/294 (6%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P+VY P Y+ L H F K++ + L +E + D + P +
Sbjct: 13 PLPVVYHPHYSA---PLPSTHRFPMAKFRLLHQLL--------LEQGVVQADEVHRPLSI 61
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
+ L H Y ++ L A VQ+ +L VGGTL
Sbjct: 62 ARRDLESVHPRTYHEAFSRDHLSRPEQRRIGLPAT-RPLVQRTWLA-----VGGTLLTAR 115
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL+RG + ++ GG HHA G GFC + D ++ ++L ++ + +IVDLD HQG+G
Sbjct: 116 LALQRGLASHLAGGTHHAHPGFGSGFCIFNDCAVAARVLLRTGEVRRILIVDLDVHQGDG 175
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
F ++ R+ + S K I LA T D YL I L +L +
Sbjct: 176 SAACFQHDPRVTTLSVHAASNFPLRKVDGDIDIPLADGTSDDDYLAAIADRLPDALDTIA 235
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
PD+++YNAG D +D LG LA+S G+ RD LV RR+ + GGY
Sbjct: 236 PDLVLYNAGVDPHRDDRLGRLALSDAGLKMRDRLVLDACLRRRIATATVIGGGY 289
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL LAL+RG + ++ GG HHA G GFC + D ++ ++L ++ + +IVDL
Sbjct: 109 GTLLTARLALQRGLASHLAGGTHHAHPGFGSGFCIFNDCAVAARVLLRTGEVRRILIVDL 168
Query: 64 DAHQ 67
D HQ
Sbjct: 169 DVHQ 172
>gi|183220176|ref|YP_001838172.1| putative arginase/deacetylase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189910296|ref|YP_001961851.1| deacetylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167774972|gb|ABZ93273.1| Deacetylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167778598|gb|ABZ96896.1| Putative arginase/deacetylase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 299
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 150/309 (48%), Gaps = 25/309 (8%)
Query: 106 VVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIE 165
+ + ++Y YN+ H F + K+ H++N + + + + + D I+
Sbjct: 1 MASNALALIYHSSYNLEL----PGHVFPAHKYSHLYNRVKR-------DPVYASWD-ILL 48
Query: 166 PQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTL 225
P++V + L + HT++YL L +S+ E P + + + Y VGGT+
Sbjct: 49 PKKVDDADLELVHTKEYLDDL-FSY------EHTPRTMYSELPLNRSIVESFMYGVGGTV 101
Query: 226 EAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAH 285
A L+ + ++ N+GGG+HH+ + GFC D+++ VK ++K A+I+DLD H
Sbjct: 102 LASELSDKHQFAFNMGGGYHHSFPDRAEGFCYLNDVAIAVKKQKETKPDINALIIDLDLH 161
Query: 286 QGNGYEKDFMNETRIFI--METCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
QGNG F + ++F M KE + L P T+D YL +E L + +
Sbjct: 162 QGNGNSYIFQYDDKVFTFSMHQGNLYPKKEISNLDVNLEPNTKDDEYLSILETSLNQIRK 221
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
F +II Y AG D +D LG L IS +G+ RD +V A +P V+ +GGY
Sbjct: 222 DFDSNIIYYVAGADPYEDDSLGELKISMKGLKERDLMVRKFAESLNIPCVVTLAGGY--- 278
Query: 404 TARIIADSI 412
AR D++
Sbjct: 279 -ARDFRDTV 286
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A L+ + ++ N+GGG+HH+ + GFC D+++ VK ++K A+I+DL
Sbjct: 99 GTVLASELSDKHQFAFNMGGGYHHSFPDRAEGFCYLNDVAIAVKKQKETKPDINALIIDL 158
Query: 64 DAHQ 67
D HQ
Sbjct: 159 DLHQ 162
>gi|257453627|ref|ZP_05618917.1| histone deacetylase family protein [Enhydrobacter aerosaccus SK60]
gi|257449085|gb|EEV24038.1| histone deacetylase family protein [Enhydrobacter aerosaccus SK60]
Length = 300
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 119/254 (46%), Gaps = 9/254 (3%)
Query: 158 ITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPM 217
+TQ N PQ +SE+++L HT++Y + LK A + P ++
Sbjct: 38 LTQANFFAPQRLSEDEILTTHTQRYWQHLKQQTLPAKDARAIGFEMTPRLVERE------ 91
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
R GT E A + G ++NI GG HHA G GFC + D+++ LL +
Sbjct: 92 RVIAHGTYECALFAKQFGVALNIAGGTHHAFADHGEGFCVFNDVAVASNLLLARGQATQI 151
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
+ VDLD HQGNG NE R+F K+A I+L T D+ YL +
Sbjct: 152 LTVDLDVHQGNGTAHLMANEPRVFTFSMHGAKNYPFRKQASDLDIDLPNETGDEAYLAIL 211
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
L + PD++ Y + DVL D LG LA++ G +RD VF +A+ +P+ +
Sbjct: 212 MDTLPALITKVKPDMLFYQSAVDVLSTDKLGKLALTRDGCAKRDAFVFSQAKAHGIPVAV 271
Query: 395 LTSGGYLKQTARII 408
+ GGY + ++
Sbjct: 272 VMGGGYSENIDDVV 285
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 1 MEYGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMI 60
+ +GT E A + G ++NI GG HHA G GFC + D+++ LL + +
Sbjct: 94 IAHGTYECALFAKQFGVALNIAGGTHHAFADHGEGFCVFNDVAVASNLLLARGQATQILT 153
Query: 61 VDLDAHQ 67
VDLD HQ
Sbjct: 154 VDLDVHQ 160
>gi|410030521|ref|ZP_11280351.1| deacetylase [Marinilabilia sp. AK2]
Length = 300
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 126/251 (50%), Gaps = 11/251 (4%)
Query: 162 NIIEPQEVSEEQLLIAHTEKYLKSLK-WSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH 220
N EP+ +S E ++ H Y + L+ S + + I + + + K + +
Sbjct: 42 NFFEPEALSREWIVNTHKSAYFEKLESLSLSKSEIRKT-------GFPLSKALVEREIHI 94
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
+ G+++A AL G ++NI GG HHA +G GFC DI++ L ++ ++V
Sbjct: 95 MHGSVQAALFALEYGVAMNIAGGTHHAFTDRGEGFCLLNDIAITANYLLENNLAKQILVV 154
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAG 337
DLD HQGNG + F E ++F S KE I L + +D YLE ++
Sbjct: 155 DLDVHQGNGTAEIFRKEPKVFTFSMHGASNYPMHKEKSDLDIGLPDHADDATYLELLDTH 214
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
LE + PD I++ +G DVL +D LG L +S QG RD+ V A+ +VPI+
Sbjct: 215 LEPLMDKVAPDFIIFQSGVDVLASDKLGRLGLSLQGCKSRDKKVLETAKRHKVPIMCCMG 274
Query: 398 GGYLKQTARII 408
GGY ++ ++II
Sbjct: 275 GGYSQKISQII 285
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 3 YGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 62
+G+++A AL G ++NI GG HHA +G GFC DI++ L ++ ++VD
Sbjct: 96 HGSVQAALFALEYGVAMNIAGGTHHAFTDRGEGFCLLNDIAITANYLLENNLAKQILVVD 155
Query: 63 LDAHQ 67
LD HQ
Sbjct: 156 LDVHQ 160
>gi|416235331|ref|ZP_11630090.1| histone deacetylase family protein [Moraxella catarrhalis 12P80B1]
gi|326564372|gb|EGE14600.1| histone deacetylase family protein [Moraxella catarrhalis 12P80B1]
Length = 301
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 120/261 (45%), Gaps = 9/261 (3%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQK 211
L+ ITQDN+ P+ +SE+++L HT Y LK + + +P +
Sbjct: 32 LLTDGIITQDNLFHPELLSEQEILSTHTADYWHKLKTG---TLTDKEIRKIGLP---MSA 85
Query: 212 CYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS 271
++ RY T E A + G S+++ GG HH G GFC + D+ + LL
Sbjct: 86 SLIKRERYITHATYECALYAKKYGISLSVSGGTHHGFADHGEGFCVFNDVCVASNLLLAR 145
Query: 272 KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQ 328
+ VDLD HQGNG N +F+ K IEL T+D
Sbjct: 146 GQAKRILSVDLDVHQGNGNASIMANNPAVFVFSMHGKKNYPFIKPPSDLDIELDDGTDDN 205
Query: 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER 388
YL + L + +R F PD++ Y AG DVL D LG L++S QG RD+LV A +
Sbjct: 206 AYLTILGKTLPKIIREFDPDMLFYQAGVDVLATDKLGKLSLSLQGCYERDKLVLTTAHKA 265
Query: 389 RVPIVMLTSGGYLKQTARIIA 409
+P+ ++ GGY ++A
Sbjct: 266 GIPVAVVMGGGYSPDIETVVA 286
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%)
Query: 1 MEYGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMI 60
+ + T E A + G S+++ GG HH G GFC + D+ + LL +
Sbjct: 94 ITHATYECALYAKKYGISLSVSGGTHHGFADHGEGFCVFNDVCVASNLLLARGQAKRILS 153
Query: 61 VDLDAHQ 67
VDLD HQ
Sbjct: 154 VDLDVHQ 160
>gi|226228541|ref|YP_002762647.1| histone deacetylase family protein [Gemmatimonas aurantiaca T-27]
gi|226091732|dbj|BAH40177.1| histone deacetylase family protein [Gemmatimonas aurantiaca T-27]
Length = 311
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 124/256 (48%), Gaps = 9/256 (3%)
Query: 157 FITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRP 216
+ D + +PQ EE L HT Y+ ++ AA L P+ FV++ +
Sbjct: 37 LVAPDRVHDPQRALEEDLRRVHTVDYVAQIRDGTLPAAEQRRIGLPWSPS-FVERAF--- 92
Query: 217 MRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST 276
V GT+EA ALR G ++N+ GG HHA +G GFC + D+++ V+ L ++
Sbjct: 93 --RVVQGTIEASACALREGLAMNLAGGTHHAFPDRGEGFCTFNDVAVAVRRLQAEGAVQR 150
Query: 277 AMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEK 333
IVDLD HQGNG F + ++F K +EL T D+ YL
Sbjct: 151 VAIVDLDVHQGNGTHGCFAGDEQVFTFSMHGAKNFPFHKVPGTLDVELEDGTGDEAYLAL 210
Query: 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIV 393
++ L R LR PD++VY AG D D LG LA++ G++ RD V RE +P+
Sbjct: 211 LQTHLPRVLRISRPDLVVYLAGADPHEGDRLGRLALTFDGLMTRDRYVIASCREVGIPVC 270
Query: 394 MLTSGGYLKQTARIIA 409
+ SGGY + +A
Sbjct: 271 VTMSGGYGRNIDDTVA 286
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+EA ALR G ++N+ GG HHA +G GFC + D+++ V+ L ++ IVDL
Sbjct: 97 GTIEASACALREGLAMNLAGGTHHAFPDRGEGFCTFNDVAVAVRRLQAEGAVQRVAIVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|254432288|ref|ZP_05045991.1| histone deacetylase family protein [Cyanobium sp. PCC 7001]
gi|197626741|gb|EDY39300.1| histone deacetylase family protein [Cyanobium sp. PCC 7001]
Length = 304
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 135/295 (45%), Gaps = 21/295 (7%)
Query: 109 RPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQE 168
RP P+VY P Y+ L H F K++ + L + T + +P
Sbjct: 2 RP-PLVYHPAYSA---PLPSSHRFPMAKFRMLLERLLQ--------LDLATPAALHQPLP 49
Query: 169 VSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAG 228
V L H Y ++ + A L A V++ +L VGGTL
Sbjct: 50 VPRRWLEAVHPRAYHQAFARAELSHADQRRIGLPAT-QPLVRRTWLS-----VGGTLLTA 103
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
LALR G + ++ GG HHA T G GFC + D+++ +L Q ++ ++VDLD HQG+
Sbjct: 104 RLALRHGLACHLAGGTHHAFPTYGSGFCIFNDVAVACSVLLQEGAVRRLLVVDLDVHQGD 163
Query: 289 GYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
G F E R+F + S K+ I L+ EDQ YL I + L L
Sbjct: 164 GTAAIFAAEPRVFTLSAHGASNFPLRKQTSDLDIPLSDGMEDQEYLVAIGSHLPDLLDQL 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
PD+++YNAG D +D LG L +S G+I RD LV RR+P+ + GGY
Sbjct: 224 QPDLVLYNAGVDPHRDDRLGRLCLSHAGLINRDRLVLEACLRRRIPVATVIGGGY 278
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL LALR G + ++ GG HHA T G GFC + D+++ +L Q ++ ++VDL
Sbjct: 98 GTLLTARLALRHGLACHLAGGTHHAFPTYGSGFCIFNDVAVACSVLLQEGAVRRLLVVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|374364611|ref|ZP_09622713.1| histone deacetylase family deacetylase [Cupriavidus basilensis
OR16]
gi|373103908|gb|EHP44927.1| histone deacetylase family deacetylase [Cupriavidus basilensis
OR16]
Length = 322
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 137/296 (46%), Gaps = 22/296 (7%)
Query: 119 YNVHF-FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIA 177
Y HF L + H F +K+ + + + + +++E ++ LL+A
Sbjct: 5 YADHFVLPLPEGHRFPMRKYSMLRTAVERDVPGL----------SLVEAPRAGDDALLLA 54
Query: 178 HTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGW 236
HT +Y+ S+ + + + E+ + + R G T+EA +ALR G
Sbjct: 55 HTPEYVASVSRGELDPSRQREI-------GFPWSDAMVERSRRSAGATIEACRIALREGI 107
Query: 237 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMN 296
S+N+ GG HHA KGGGFC + D ++ + L + + +VDLD HQGNG +
Sbjct: 108 SVNLAGGTHHAYADKGGGFCVFNDAAVAARQLRRDGRVERVAVVDLDVHQGNGTASILRD 167
Query: 297 ETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYN 353
+ +F + KEA + L +D Y + ++ L+ F PD+I+Y
Sbjct: 168 DPFVFTLSLHGEKNYPFRKEASDLDVGLPDGCDDDAYAQALQGALDMLFARFSPDLIIYL 227
Query: 354 AGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIA 409
AG D D LG L ++ G+ RRD LVF A R +PI + +GGY Q +A
Sbjct: 228 AGADPHEGDRLGRLKLTLAGLARRDCLVFDAALARGLPIAVAMAGGYGNQIENTVA 283
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
T+EA +ALR G S+N+ GG HHA KGGGFC + D ++ + L + + +VDLD
Sbjct: 95 TIEACRIALREGISVNLAGGTHHAYADKGGGFCVFNDAAVAARQLRRDGRVERVAVVDLD 154
Query: 65 AHQ 67
HQ
Sbjct: 155 VHQ 157
>gi|359440503|ref|ZP_09230417.1| hypothetical protein P20429_0778 [Pseudoalteromonas sp. BSi20429]
gi|358037538|dbj|GAA66666.1| hypothetical protein P20429_0778 [Pseudoalteromonas sp. BSi20429]
Length = 302
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 140/303 (46%), Gaps = 29/303 (9%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ F + H F K+ H++ ++ K + DN++EP +
Sbjct: 8 PLVYHPNYS---FNFDPKHRFAMSKFAHLYQHVAK---------LGLIGDNLVEPILGTP 55
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGF 229
E L + H E Y+ L +N + + +P + + + P GTL+
Sbjct: 56 EPLELIHCENYIHDL---WNNRLDEKAMRRIGLPWSKELMARTFTAPQ-----GTLQTAR 107
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL+ G + ++ GG HHA G G+C D++ + L +S ++ +I DLD HQG+G
Sbjct: 108 LALKHGIACHLAGGTHHAHTDFGSGYCMVNDLAFTTQTLIESGEVTNVLIFDLDVHQGDG 167
Query: 290 YEKDFMNETRIFIMETCITSKA-----KEAIRCRIELAPYTEDQHYLEKIEAGLERSLRS 344
M E + + I + K A + LA +D YL ++ L L+
Sbjct: 168 TAA--MLEHQAYAYTCSIHCEKNFPFRKSASDLDVGLADNMKDDEYLAVVDDTLSYLLKE 225
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT 404
P +++Y+AG D+ D LG L IS GI++RD LV + E P+ + GGY K
Sbjct: 226 LNPSLVLYDAGVDIWQGDGLGKLDISWDGIVKRDHLVLKRCLEHNTPVATVIGGGYDKDH 285
Query: 405 ARI 407
R+
Sbjct: 286 LRL 288
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL+ LAL+ G + ++ GG HHA G G+C D++ + L +S ++ +I DL
Sbjct: 101 GTLQTARLALKHGIACHLAGGTHHAHTDFGSGYCMVNDLAFTTQTLIESGEVTNVLIFDL 160
Query: 64 DAHQ 67
D HQ
Sbjct: 161 DVHQ 164
>gi|387790625|ref|YP_006255690.1| deacetylase [Solitalea canadensis DSM 3403]
gi|379653458|gb|AFD06514.1| deacetylase, histone deacetylase/acetoin utilization protein
[Solitalea canadensis DSM 3403]
Length = 299
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 127/260 (48%), Gaps = 9/260 (3%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQK 211
L+ IT +N+ P V EE +L+ H +Y LK + ++ E P Q+
Sbjct: 31 LLHEGTITHENLFSPAFVPEEIILLTHKHEYWNKLK-TLTLSPQEER--RTGFP--LSQQ 85
Query: 212 CYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS 271
R + GT++ + AL G ++N+ GG HHA KG GFC DI++ L +
Sbjct: 86 LIDREITI-AQGTIDCCYYALNDGVALNVAGGTHHAFTDKGEGFCLLNDIAIAANYLLKK 144
Query: 272 KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQ 328
K S ++VDLD HQGNG + F + +F + KE IEL T+DQ
Sbjct: 145 KIASKILVVDLDVHQGNGTAEIFQDNKAVFTFSMHGKTNWPYKKERSDLDIELPDNTDDQ 204
Query: 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER 388
YL ++ L ++ PD I Y +G D+L +D LG L++S G RD VF + ++
Sbjct: 205 LYLGLLKETLTHLIKKEKPDFIFYQSGVDILESDKLGKLSVSKTGCKERDRFVFEQCKQN 264
Query: 389 RVPIVMLTSGGYLKQTARII 408
+P+ + GGY + A I+
Sbjct: 265 TIPVTVSMGGGYSPRVADIV 284
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++ + AL G ++N+ GG HHA KG GFC DI++ L + K S ++VDL
Sbjct: 96 GTIDCCYYALNDGVALNVAGGTHHAFTDKGEGFCLLNDIAIAANYLLKKKIASKILVVDL 155
Query: 64 DAHQ-------FSDYYFPSAHSIKRKRKVEFLKERKALEDEITSEPQESV 106
D HQ F D S+ K + KER L+ E+ + +
Sbjct: 156 DVHQGNGTAEIFQDNKAVFTFSMHGKTNWPYKKERSDLDIELPDNTDDQL 205
>gi|315125963|ref|YP_004067966.1| histone deacetylase [Pseudoalteromonas sp. SM9913]
gi|315014477|gb|ADT67815.1| histone deacetylase protein [Pseudoalteromonas sp. SM9913]
Length = 302
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 137/301 (45%), Gaps = 25/301 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ F + H F K F L +H V+ + NIIEP S
Sbjct: 8 PLVYHPNYS---FSFDPKHRFVMSK----FAQLHQH-----VKTLGLAGSNIIEPPHGSV 55
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGF 229
E+L I H E Y+ L W + + + +P + + + P+ GTL+
Sbjct: 56 EELEIVHCENYIHDL-WHNRLD--EKAMRRIGLPWSQALMNRTFTAPL-----GTLQTAR 107
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL+ G + ++ GG HHA G GFC D++ + L Q++ ++ +I DLD HQG+G
Sbjct: 108 LALKNGLACHLAGGTHHAHSDFGSGFCMVNDLAYTAQTLIQNREVTNVLIFDLDVHQGDG 167
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
++ F K I LA +D YL ++ L+ L
Sbjct: 168 TAAMLAHQPYAFTCSIHCEKNFPFRKSPSDLDIGLANNMQDAEYLGIVDDTLQFLLNELN 227
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
PD+++Y+AG D+ D LG L IS QGI +RD LV + P+ + GGY + R
Sbjct: 228 PDLVLYDAGVDIWQEDGLGKLDISWQGIEKRDHLVLKRCLANNTPVATVIGGGYDRDHQR 287
Query: 407 I 407
+
Sbjct: 288 L 288
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL+ LAL+ G + ++ GG HHA G GFC D++ + L Q++ ++ +I DL
Sbjct: 101 GTLQTARLALKNGLACHLAGGTHHAHSDFGSGFCMVNDLAYTAQTLIQNREVTNVLIFDL 160
Query: 64 DAHQFSDYYFPSAH-------SIKRKRKVEFLKERKALEDEITSEPQES 105
D HQ AH SI ++ F K L+ + + Q++
Sbjct: 161 DVHQGDGTAAMLAHQPYAFTCSIHCEKNFPFRKSPSDLDIGLANNMQDA 209
>gi|416247314|ref|ZP_11635620.1| histone deacetylase family protein [Moraxella catarrhalis BC8]
gi|326569907|gb|EGE19957.1| histone deacetylase family protein [Moraxella catarrhalis BC8]
Length = 301
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 121/263 (46%), Gaps = 13/263 (4%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQK 211
L+ ITQDN+ P+ +SE+++L HT Y LK + + +P +
Sbjct: 32 LLTDGIITQDNLFHPELLSEQEILSTHTADYWHKLKTG---TLTDKEIRKIGLP---MSA 85
Query: 212 CYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS 271
++ RY T E A + G S+++ GG HH G GFC + D+ + LL
Sbjct: 86 SLIKRERYITHATYECALYAKKYGISLSVSGGTHHGFADHGEGFCVFNDVCVASNLLLAR 145
Query: 272 KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSKA-----KEAIRCRIELAPYTE 326
+ VDLD HQGNG N +F+ I K K IEL T+
Sbjct: 146 GQAKRILSVDLDVHQGNGNASIMANNPAVFVFS--IHGKKNYPFYKPPSDLDIELDDGTD 203
Query: 327 DQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKAR 386
D YL + L + +R F PD++ Y AG DVL D LG L++S G RD+LV A
Sbjct: 204 DNAYLTILSETLPKIIREFDPDMLFYQAGVDVLATDKLGKLSLSMAGCYERDKLVLTTAH 263
Query: 387 ERRVPIVMLTSGGYLKQTARIIA 409
+ +P+ ++ GGY ++A
Sbjct: 264 KAGIPVAVVMGGGYSPDIETVVA 286
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%)
Query: 1 MEYGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMI 60
+ + T E A + G S+++ GG HH G GFC + D+ + LL +
Sbjct: 94 ITHATYECALYAKKYGISLSVSGGTHHGFADHGEGFCVFNDVCVASNLLLARGQAKRILS 153
Query: 61 VDLDAHQ 67
VDLD HQ
Sbjct: 154 VDLDVHQ 160
>gi|416254189|ref|ZP_11638623.1| histone deacetylase family protein [Moraxella catarrhalis O35E]
gi|326577638|gb|EGE27515.1| histone deacetylase family protein [Moraxella catarrhalis O35E]
Length = 301
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 121/261 (46%), Gaps = 9/261 (3%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQK 211
L+ ITQDN+ P+ +SE+++L HT Y LK + + +P +
Sbjct: 32 LLTDGIITQDNLFHPELLSEQEILSTHTADYWHKLKTG---TLTDKEIRKIGLP---MSA 85
Query: 212 CYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS 271
++ RY T E A + G S+++ GG HH G GFC + D+ + LL
Sbjct: 86 SLIKRERYITHATYECALYAKKYGISLSVSGGTHHGFADHGEGFCVFNDVCVASNLLLAR 145
Query: 272 KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQ 328
+ VDLD HQGNG N +F+ K IEL T+D
Sbjct: 146 GQAKRILSVDLDVHQGNGNASIMANNPAVFVFSMHGKKNYPFIKPPSDLDIELDDGTDDN 205
Query: 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER 388
YL + L + + +F PD++ Y AG DVL D LG L++S QG RD+LV + A +
Sbjct: 206 AYLTILGKTLPKIIHNFDPDMLFYQAGVDVLATDKLGKLSLSLQGCYERDKLVLITAHKA 265
Query: 389 RVPIVMLTSGGYLKQTARIIA 409
+P+ ++ GGY ++A
Sbjct: 266 GIPVAVVMGGGYSPDIETVVA 286
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%)
Query: 1 MEYGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMI 60
+ + T E A + G S+++ GG HH G GFC + D+ + LL +
Sbjct: 94 ITHATYECALYAKKYGISLSVSGGTHHGFADHGEGFCVFNDVCVASNLLLARGQAKRILS 153
Query: 61 VDLDAHQ 67
VDLD HQ
Sbjct: 154 VDLDVHQ 160
>gi|99643283|emb|CAK22358.1| class 4 HDAC protein [Platynereis dumerilii]
Length = 322
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 91/305 (29%), Positives = 139/305 (45%), Gaps = 20/305 (6%)
Query: 99 TSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI 158
T + +V + PI++ +Y +L K H F KK+ +FNYL K I
Sbjct: 8 TFAARTTVTSNCLPIIHHHDY---VSELPKGHRFAMKKFHGVFNYLLK--------DNII 56
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
+ EP EVS + + HT +Y++ F SE + K LR R
Sbjct: 57 QMKQVAEPDEVSSQVAGLVHTPEYVEK----FFTGKTSE--KEQRRTGFKWNKGLLRRCR 110
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
GGT+ LA RG + + GGG HHA + G G+C D+++ + + +
Sbjct: 111 LEAGGTVLGCHLAKERGLACSTGGGTHHAFPSYGSGYCLLNDLAIAAENSVATGVAERVL 170
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIE 335
IVDLD HQG+G F + IF S K+ + LA + D Y+ +++
Sbjct: 171 IVDLDVHQGDGTANIFEDSDSIFTFSMHCQSNFPFVKQNSDLDVGLADHIGDAEYMRELQ 230
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
L L +F P +I+Y+AG D + D LG L ++ QG+ RD V + R +P+V +
Sbjct: 231 THLPVILETFHPGLILYDAGVDPHVKDELGKLDLTDQGLFDRDYYVLDEGIRRGIPLVTV 290
Query: 396 TSGGY 400
GGY
Sbjct: 291 IGGGY 295
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LA RG + + GGG HHA + G G+C D+++ + + +IVDL
Sbjct: 115 GTVLGCHLAKERGLACSTGGGTHHAFPSYGSGYCLLNDLAIAAENSVATGVAERVLIVDL 174
Query: 64 DAHQ 67
D HQ
Sbjct: 175 DVHQ 178
>gi|118357387|ref|XP_001011943.1| Histone deacetylase family protein [Tetrahymena thermophila]
gi|89293710|gb|EAR91698.1| Histone deacetylase family protein [Tetrahymena thermophila SB210]
Length = 458
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 114/205 (55%), Gaps = 8/205 (3%)
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
+L+++ S I + + GGGFC Y DI ++ L + I MIVDLDAHQGN
Sbjct: 248 YLSIKLQTSNKIQHSINRNKKQSGGGFCIYPDICFAIEYLRKCFGIKRCMIVDLDAHQGN 307
Query: 289 GYEKDFMNET-RIFIME------TCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERS 341
G+E+DF+++ FI++ + A + I + T D Y+ + L++
Sbjct: 308 GHERDFIDDKENTFILDFYNHSIYPADTFAAKGISLSKNVDFDTSDSEYISMLRKTLQKI 367
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYL 401
L F P+ ++YNAGTD L D LG + +S II+RD++VF + R +P+ M+ SGGY
Sbjct: 368 LDQFKPEFLLYNAGTDCLEGDRLGQMNLSQNCIIQRDQVVFEECLNRDIPLTMVLSGGYQ 427
Query: 402 KQTARIIADSILNLADLGLISRPYN 426
+ A +IADSILNL D L + YN
Sbjct: 428 QINAPVIADSILNL-DQNLKIKNYN 451
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 86/161 (53%), Gaps = 11/161 (6%)
Query: 89 KERKALEDEITSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHI 148
KE+K +E + E+ PI+Y P YN+ +EKLHPFDS K+ +FN L
Sbjct: 59 KEKKRMEQRYSQSELENKYIENLPILYHPSYNITACGIEKLHPFDSVKYGRVFNILK--- 115
Query: 149 FNYLVEAKFITQDNIIEPQEVSEEQLLI--AHTEKYLKSLKWSFNVAAISEVCPLVAVPN 206
E F+ + +P+E L++ + YL L ++ V+ E+ PL +P
Sbjct: 116 -----EKGFLQEQGFYKPKEKVGRGLMLHLGMSPLYLLYLNYAAYVSKCIEI-PLFFLPA 169
Query: 207 YFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHA 247
F++ L PM + G+++A L+L+RGWSIN+ GG+HHA
Sbjct: 170 SFLRWKVLDPMMFSTQGSIDAAVLSLKRGWSINLSGGYHHA 210
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 10 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+L+++ S I + + GGGFC Y DI ++ L + I MIVDLDAHQ
Sbjct: 248 YLSIKLQTSNKIQHSINRNKKQSGGGFCIYPDICFAIEYLRKCFGIKRCMIVDLDAHQ 305
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+++A L+L+RGWSIN+ GG+HHA A + + K FQ + S+ +
Sbjct: 186 GSIDAAVLSLKRGWSINLSGGYHHACRYSEKQKVALENQKIYSK--FQINNFSSELRNQQ 243
Query: 64 DAHQFSDYYFPSA----HSIKRKRK 84
+Q+ ++ HSI R +K
Sbjct: 244 KPNQYLSIKLQTSNKIQHSINRNKK 268
>gi|359432950|ref|ZP_09223299.1| hypothetical protein P20652_1411 [Pseudoalteromonas sp. BSi20652]
gi|357920408|dbj|GAA59548.1| hypothetical protein P20652_1411 [Pseudoalteromonas sp. BSi20652]
Length = 302
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 137/301 (45%), Gaps = 25/301 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ F + H F K+ H++ + V + +N++EP +
Sbjct: 8 PLVYHPNYS---FNFDPKHRFAMSKFAHLYQH---------VAELGLINNNLVEPILGTP 55
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGF 229
E L + H E Y+ L +N + + +P + + + P GTL+
Sbjct: 56 EPLELIHCENYIHDL---WNNRLDEKAMRRIGLPWSKELMARTFTAPQ-----GTLQTAR 107
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL+ G + ++ GG HHA G G+C D++ + L +S ++ +I DLD HQG+G
Sbjct: 108 LALKHGIACHLAGGTHHAHNDFGSGYCMVNDLAFTAQTLIESGEVTNVLIFDLDVHQGDG 167
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
++ + K A I LA +D YL ++ L L+
Sbjct: 168 TAAMLQHQAYAYTCSIHCEKNFPFRKSASDLDIGLANNMKDDEYLAIVDETLSYLLKELN 227
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
P +++Y+AG D+ D LG L IS GI++RD LV + E +P+ + GGY K R
Sbjct: 228 PSLVLYDAGVDIWQGDGLGKLDISWDGIVKRDHLVLKRCLEHNIPVATVIGGGYDKDHLR 287
Query: 407 I 407
+
Sbjct: 288 L 288
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL+ LAL+ G + ++ GG HHA G G+C D++ + L +S ++ +I DL
Sbjct: 101 GTLQTARLALKHGIACHLAGGTHHAHNDFGSGYCMVNDLAFTAQTLIESGEVTNVLIFDL 160
Query: 64 DAHQ 67
D HQ
Sbjct: 161 DVHQ 164
>gi|359452419|ref|ZP_09241768.1| hypothetical protein P20495_0507 [Pseudoalteromonas sp. BSi20495]
gi|358050552|dbj|GAA78017.1| hypothetical protein P20495_0507 [Pseudoalteromonas sp. BSi20495]
Length = 302
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 136/301 (45%), Gaps = 25/301 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ F + H F K+ H++ + VE + DN++EP +
Sbjct: 8 PLVYHPNYS---FSFDPKHRFAMSKFAHLYQH---------VEELGLIGDNLVEPILGTP 55
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGF 229
L + H E Y+ L +N + + +P + + + P GTL+
Sbjct: 56 APLELIHCENYIHDL---WNNRLDEKAMRRIGLPWSKKLMARTFTAPQ-----GTLQTAR 107
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL+ G + ++ GG HHA G G+C D++ + L +S ++ +I DLD HQG+G
Sbjct: 108 LALKHGIACHLAGGTHHAHTDFGSGYCMVNDLAFTTQTLIESGEVTNVLIFDLDVHQGDG 167
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
++ + K A I L +D YL ++ L L+
Sbjct: 168 TAAMLQHQAYAYTCSIHCEKNFPFRKSASDLDIGLTDNMKDDEYLAIVDETLSYLLKELN 227
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
P +++Y+AG D+ D LG L IS GII+RD LV + E +P+ + GGY K R
Sbjct: 228 PSLVLYDAGVDIWQGDGLGKLDISWDGIIKRDHLVLKRCLEHSIPVATVIGGGYDKDHLR 287
Query: 407 I 407
+
Sbjct: 288 L 288
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL+ LAL+ G + ++ GG HHA G G+C D++ + L +S ++ +I DL
Sbjct: 101 GTLQTARLALKHGIACHLAGGTHHAHTDFGSGYCMVNDLAFTTQTLIESGEVTNVLIFDL 160
Query: 64 DAHQ 67
D HQ
Sbjct: 161 DVHQ 164
>gi|338213016|ref|YP_004657071.1| histone deacetylase superfamily protein [Runella slithyformis DSM
19594]
gi|336306837|gb|AEI49939.1| histone deacetylase superfamily [Runella slithyformis DSM 19594]
Length = 305
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 122/254 (48%), Gaps = 11/254 (4%)
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISE-VCPLVAVPNYFVQKCYLRPM 217
T DN P + E +L HT Y + LK ISE + + P + R
Sbjct: 44 TSDNFFSPGTLDERWILDVHTRAYWEDLKQ----LRISEKMVRRIGFP--LSARLIERET 97
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
R GT+E AL G S+N+ GG HHA +G GFC D+++ L ++KS+S
Sbjct: 98 RI-AQGTIECTHHALTHGVSMNVAGGTHHAYADRGEGFCLLNDVAIAANYLLKNKSVSKI 156
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
+++DLD HQGNG F NE R+F KE I L T+D+ YL+ +
Sbjct: 157 LVIDLDVHQGNGTAVIFQNEPRVFTFSMHGKDNYPLHKEVSDLDIALPTGTQDEEYLQLL 216
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
L +++ PD Y +G D+L D LG L +S G +RDE VF + + +P+ +
Sbjct: 217 TDTLPALIKAQKPDFAFYISGVDILGTDKLGKLKVSLDGCRQRDEFVFAQCQTHHIPVAV 276
Query: 395 LTSGGYLKQTARII 408
GGY + A I+
Sbjct: 277 SIGGGYSPRIADIV 290
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+E AL G S+N+ GG HHA +G GFC D+++ L ++KS+S +++DL
Sbjct: 102 GTIECTHHALTHGVSMNVAGGTHHAYADRGEGFCLLNDVAIAANYLLKNKSVSKILVIDL 161
Query: 64 DAHQ 67
D HQ
Sbjct: 162 DVHQ 165
>gi|71280821|ref|YP_270049.1| histone deacetylase [Colwellia psychrerythraea 34H]
gi|71146561|gb|AAZ27034.1| histone deacetylase family protein [Colwellia psychrerythraea 34H]
Length = 300
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 140/300 (46%), Gaps = 20/300 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+V+ P Y+ +L H F +K+ I N L A + + +P V+
Sbjct: 4 PLVFHPIYSQ--LELPIRHRFPIEKYVGIRNALV---------ANGVPNNWFKKPTPVNP 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ + + Y+ L N S+ + P + Q+ R + VGGT+ LA
Sbjct: 53 DNVKTVYDPTYIHQL---INNQLDSKAMRRIGFP--WSQQLIERTLTA-VGGTIMTAQLA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G S+N+ GG+HHA G GFC D+ L + Q+ +IS +I D D HQG+G
Sbjct: 107 LEYGKSLNLTGGYHHAFANFGSGFCMINDLYLAALTMLQNDNISKVLIFDADVHQGDGTA 166
Query: 292 KDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
K N +F + K+ L T D YLE ++ L ++ SF PD
Sbjct: 167 KLASNNQNVFTVSIHGEKNFPHRKQVSNLDFALPKGTTDSLYLETVDNALNKAFSSFKPD 226
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
++Y+AG D+ ND LG L IS QG++ RD+LVF + + +PI + GGY + ++
Sbjct: 227 AVIYDAGVDIHCNDDLGHLDISTQGVLARDKLVFDYCKLKGIPIAAVIGGGYQRDIEALV 286
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G S+N+ GG+HHA G GFC D+ L + Q+ +IS +I D
Sbjct: 98 GTIMTAQLALEYGKSLNLTGGYHHAFANFGSGFCMINDLYLAALTMLQNDNISKVLIFDA 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|386288827|ref|ZP_10065967.1| deacetylase [gamma proteobacterium BDW918]
gi|385278382|gb|EIF42354.1| deacetylase [gamma proteobacterium BDW918]
Length = 320
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 140/305 (45%), Gaps = 28/305 (9%)
Query: 103 QESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDN 162
+ V++ P+V P Y+ + H F +K+ +FN+L E TQ N
Sbjct: 10 EPPVLSAQLPLVSNPLYS---YPFASGHRFPMQKFSLLFNHLR--------EIGIATQAN 58
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYH 220
P V E L +AH +Y+ + N + +P Q+ + P
Sbjct: 59 TYRPGRVRGEVLALAHCPQYIHAF---CNNTLSPSANRRMGLPWSESLRQRSLISP---- 111
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
GT LAL+ G + ++ GG HHA GFC + D+++ + L K + +I
Sbjct: 112 -NGTFLTAQLALKYGMACHLAGGTHHAHYDFASGFCIFNDLAVTARTLLAQKKVQRILIF 170
Query: 281 DLDAHQGNGYEKDFMNETRIFIMET-C----ITSKAKEAIRCRIELAPYTEDQHYLEKIE 335
D D HQG+G + ++T +F C KA+ + I +A DQ YL+ +
Sbjct: 171 DCDVHQGDGTARILQSDTAVFTCSVHCEKNFPVRKARSDLD--INVAAGCGDQEYLDIVN 228
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
AGL ++LR PDI++Y+AG D+ +DPLGLL IS GI RD LV + + + +
Sbjct: 229 AGLSQALRLARPDIVLYDAGVDIYEHDPLGLLNISNAGIRERDRLVLESCVTQGIAVATV 288
Query: 396 TSGGY 400
GGY
Sbjct: 289 IGGGY 293
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LAL+ G + ++ GG HHA GFC + D+++ + L K + +I D
Sbjct: 113 GTFLTAQLALKYGMACHLAGGTHHAHYDFASGFCIFNDLAVTARTLLAQKKVQRILIFDC 172
Query: 64 DAHQ 67
D HQ
Sbjct: 173 DVHQ 176
>gi|359687906|ref|ZP_09257907.1| deacetylase [Leptospira licerasiae serovar Varillal str. MMD0835]
gi|418750973|ref|ZP_13307259.1| histone deacetylase family protein [Leptospira licerasiae str.
MMD4847]
gi|418758793|ref|ZP_13314975.1| histone deacetylase family protein [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|384114695|gb|EIE00958.1| histone deacetylase family protein [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|404273576|gb|EJZ40896.1| histone deacetylase family protein [Leptospira licerasiae str.
MMD4847]
Length = 335
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 144/312 (46%), Gaps = 26/312 (8%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
+VY PEYN+ H F ++K+ I+N + E ++ ++P V EE
Sbjct: 43 LVYHPEYNMDLGP----HVFPARKYAMIYNQVK--------EDPKLSSLPALQPAPVGEE 90
Query: 173 QLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+L + HT +++ + + + PL + +R VGGT+ A +
Sbjct: 91 ELSLVHTPEFISDFMNLRYTDRTMYSELPL--------NQTMVRSFCLGVGGTILATEMT 142
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
+ +IGGGFHH+ + GFC D ++ KL Q + +DLD HQGNG
Sbjct: 143 ENYKYVYHIGGGFHHSMPDRAEGFCYLNDAAIAAKLYLQKHPERKVLFIDLDLHQGNGNA 202
Query: 292 KDFMNETRI--FIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDI 349
K F + + F M KE + L D+ YL +E GLE+ + F PD+
Sbjct: 203 KIFHGDPSVWTFSMHQEDLYPKKEKSNLDVPLDKGANDKTYLSSLEQGLEKIRKEFKPDL 262
Query: 350 IVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ---TAR 406
I Y AG D +D LG L ++ G+ RD++V A +P+V++ +GGY + T R
Sbjct: 263 IYYFAGADPFEDDSLGDLKLTFDGLKARDKMVKTFADSLDIPVVVMPAGGYARNFHDTVR 322
Query: 407 IIADSILNLADL 418
I ++I A L
Sbjct: 323 IHFNTIRVFASL 334
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A + + +IGGGFHH+ + GFC D ++ KL Q + +DL
Sbjct: 134 GTILATEMTENYKYVYHIGGGFHHSMPDRAEGFCYLNDAAIAAKLYLQKHPERKVLFIDL 193
Query: 64 DAHQ 67
D HQ
Sbjct: 194 DLHQ 197
>gi|359437703|ref|ZP_09227758.1| histone deacetylase [Pseudoalteromonas sp. BSi20311]
gi|359445306|ref|ZP_09235050.1| hypothetical protein P20439_1372 [Pseudoalteromonas sp. BSi20439]
gi|358027642|dbj|GAA64007.1| histone deacetylase [Pseudoalteromonas sp. BSi20311]
gi|358040872|dbj|GAA71299.1| hypothetical protein P20439_1372 [Pseudoalteromonas sp. BSi20439]
Length = 302
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 136/301 (45%), Gaps = 25/301 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ F + H F K F L +H V+ + NI EP S
Sbjct: 8 PLVYHPNYS---FSFDPKHRFVMSK----FAQLHQH-----VKTLGLAGSNITEPPHGSV 55
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGF 229
E+L I H E Y+ L W + + + +P + + + P+ GTL+
Sbjct: 56 EELEIVHCENYIHDL-WHNRLD--EKAMRRIGLPWSQALMNRTFTAPL-----GTLQTAR 107
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL+ G + ++ GG HHA G GFC D++ + L Q++ ++ +I DLD HQG+G
Sbjct: 108 LALKNGLACHLAGGTHHAHSDFGSGFCMVNDLAFTAQTLIQNREVTNVLIFDLDVHQGDG 167
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
++ F K I LA +D YL ++ L+ L
Sbjct: 168 TAAMLAHQPYAFTCSIHCEKNFPFRKSPSDLDIGLANNMQDAEYLGIVDDTLQFLLNELN 227
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
PD+++Y+AG D+ D LG L IS QGI +RD LV + P+ + GGY + R
Sbjct: 228 PDLVLYDAGVDIWQEDGLGKLDISWQGIEKRDHLVLKRCLANNTPVATVIGGGYDRDHQR 287
Query: 407 I 407
+
Sbjct: 288 L 288
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL+ LAL+ G + ++ GG HHA G GFC D++ + L Q++ ++ +I DL
Sbjct: 101 GTLQTARLALKNGLACHLAGGTHHAHSDFGSGFCMVNDLAFTAQTLIQNREVTNVLIFDL 160
Query: 64 DAHQFSDYYFPSAH-------SIKRKRKVEFLKERKALEDEITSEPQES 105
D HQ AH SI ++ F K L+ + + Q++
Sbjct: 161 DVHQGDGTAAMLAHQPYAFTCSIHCEKNFPFRKSPSDLDIGLANNMQDA 209
>gi|118589342|ref|ZP_01546748.1| hypothetical protein SIAM614_07353 [Stappia aggregata IAM 12614]
gi|118438042|gb|EAV44677.1| hypothetical protein SIAM614_07353 [Labrenzia aggregata IAM 12614]
Length = 309
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 136/294 (46%), Gaps = 24/294 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIV+ P Y L H F K++ + + + ++ + P+
Sbjct: 4 PIVHHPAYCA---DLPANHRFPMDKFRAVAELIRRE--------GLLSDNAFFRPRPAPF 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E + +AH Y+ + FN ++ + P + LR R GGT+ G+LA
Sbjct: 53 EWVALAHEPAYVDQV---FNARVPDKIAREIGFP--MREDIALR-ARCATGGTVLTGYLA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G + N GG HHA G GFC + D+++ +K+L +I TA+++DLD HQG+G
Sbjct: 107 LEHGIACNTAGGSHHARRAHGAGFCVFNDVAVAIKVLQADGAIRTALVIDLDVHQGDGTA 166
Query: 292 KDFMNETRIFIMETCITSKAKEAIR-----CRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
F + +F + S+ +R I LA T D+ YL +E L LR
Sbjct: 167 DIFQGDPNVFTFS--LHSEKNYPVRKVPSHLDIGLADGTGDEVYLAILEEVLPDLLRQGP 224
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
DI+ +NAG D D LG LA+S +G+ RRD V R+ VP+ + GGY
Sbjct: 225 WDIVFFNAGVDPYSGDRLGRLALSREGLWRRDRYVIETVRQAGVPLAGVLGGGY 278
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ G+LAL G + N GG HHA G GFC + D+++ +K+L +I TA+++DL
Sbjct: 98 GTVLTGYLALEHGIACNTAGGSHHARRAHGAGFCVFNDVAVAIKVLQADGAIRTALVIDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|392556279|ref|ZP_10303416.1| histone deacetylase [Pseudoalteromonas undina NCIMB 2128]
Length = 302
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 136/301 (45%), Gaps = 25/301 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ F + H F K F L +H V+ + NI EP S
Sbjct: 8 PLVYHPNYS---FSFDPKHRFVMSK----FAQLHQH-----VKTLGLAGSNITEPPHGSV 55
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGF 229
E+L I H E Y+ L W + + + +P + + + P+ GTL+
Sbjct: 56 EELEIVHCENYIHDL-WHNRLD--EKAMRRIGLPWSQALMNRTFTAPL-----GTLQTAR 107
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL+ G + ++ GG HHA G GFC D++ + L Q++ ++ +I DLD HQG+G
Sbjct: 108 LALKNGLACHLAGGTHHAHSDFGSGFCMVNDLAFTAQTLIQNREVTNVLIFDLDVHQGDG 167
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
++ F K I LA +D YL ++ L+ L
Sbjct: 168 TAAMLSHQPYAFTCSIHCEKNFPFRKSPSDLDIGLANNMQDAEYLGIVDDTLQFLLNELN 227
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
PD+++Y+AG D+ D LG L IS QGI +RD LV + P+ + GGY + R
Sbjct: 228 PDLVLYDAGVDIWQEDGLGKLDISWQGIEKRDHLVLKRCLANNTPVATVIGGGYDRDHQR 287
Query: 407 I 407
+
Sbjct: 288 L 288
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL+ LAL+ G + ++ GG HHA G GFC D++ + L Q++ ++ +I DL
Sbjct: 101 GTLQTARLALKNGLACHLAGGTHHAHSDFGSGFCMVNDLAFTAQTLIQNREVTNVLIFDL 160
Query: 64 DAHQ 67
D HQ
Sbjct: 161 DVHQ 164
>gi|119584567|gb|EAW64163.1| histone deacetylase 11, isoform CRA_g [Homo sapiens]
Length = 213
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 66/131 (50%), Positives = 92/131 (70%), Gaps = 7/131 (5%)
Query: 265 VKLLFQS-KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCI------TSKAKEAIRC 317
+K LF+ + IS A I+DLDAHQGNG+E+DFM++ R++IM+ AK+AIR
Sbjct: 83 LKFLFERVEGISRATIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRR 142
Query: 318 RIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRR 377
++EL TED YL+K+E +++SL+ PD++VYNAGTD+L D LG L+ISP GI++R
Sbjct: 143 KVELEWGTEDDEYLDKVERNIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKR 202
Query: 378 DELVFMKARER 388
DELVF R R
Sbjct: 203 DELVFRMVRGR 213
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 57/102 (55%), Gaps = 9/102 (8%)
Query: 99 TSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI 158
T++ + V WPIVY P YN+ F LEKLHPFD+ K W + N+L E K +
Sbjct: 4 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGK--------WGKVINFLKEEKLL 55
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFN-VAAISEVC 199
+ ++E +E SEE LL+ HT +YL LK+ F V IS
Sbjct: 56 SDSMLVEAREASEEDLLVVHTRRYLNELKFLFERVEGISRAT 97
>gi|414069842|ref|ZP_11405833.1| Deacetylase [Pseudoalteromonas sp. Bsw20308]
gi|410807805|gb|EKS13780.1| Deacetylase [Pseudoalteromonas sp. Bsw20308]
Length = 302
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 135/301 (44%), Gaps = 25/301 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ F + H F K+ H++ + VE + DN++EP +
Sbjct: 8 PLVYHPNYS---FSFDPKHRFAMSKFAHLYQH---------VEELGLIGDNLVEPILGTP 55
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGF 229
L + H E Y+ L +N + + +P + + + P GTL+
Sbjct: 56 APLELIHCENYIHDL---WNNRLDEKAMRRIGLPWSKKLMARTFTAPQ-----GTLQTAR 107
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL+ G + ++ GG HHA G G+C D++ + L +S ++ +I DLD HQG+G
Sbjct: 108 LALKHGIACHLAGGTHHAHTDFGSGYCMVNDLAFTTQTLIESGEVTNVLIFDLDVHQGDG 167
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
++ + K A I L +D YL ++ L L+
Sbjct: 168 TAAMLQHQAYAYTCSIHCEKNFPFRKSASDLDIGLTDNMKDDEYLAIVDETLSYLLKELN 227
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
P +++Y+AG D+ D LG L IS GII+RD LV + E P+ + GGY K R
Sbjct: 228 PSLVLYDAGVDIWQGDGLGKLDISWDGIIKRDHLVLKRCLEHNTPVATVIGGGYDKDHLR 287
Query: 407 I 407
+
Sbjct: 288 L 288
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL+ LAL+ G + ++ GG HHA G G+C D++ + L +S ++ +I DL
Sbjct: 101 GTLQTARLALKHGIACHLAGGTHHAHTDFGSGYCMVNDLAFTTQTLIESGEVTNVLIFDL 160
Query: 64 DAHQ 67
D HQ
Sbjct: 161 DVHQ 164
>gi|373957064|ref|ZP_09617024.1| histone deacetylase superfamily [Mucilaginibacter paludis DSM
18603]
gi|373893664|gb|EHQ29561.1| histone deacetylase superfamily [Mucilaginibacter paludis DSM
18603]
Length = 300
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 131/277 (47%), Gaps = 16/277 (5%)
Query: 139 HIFNYL-WKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISE 197
H F L ++ I L+ IT DN+ P V E +L++H + Y + L+ ++A +
Sbjct: 18 HRFPMLKYELIPQQLLHEGVITSDNLFSPDAVDEATILLSHQKDYWEQLR-DLTLSAKEQ 76
Query: 198 V---CPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGG 254
PL A + R +R GT++ + A G + N+ GG HHA G G
Sbjct: 77 RRIGFPLSA-------RLVEREVRI-AKGTIDGCYFAFEHGVAFNVAGGTHHAGSNWGEG 128
Query: 255 FCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---A 311
FC D ++ L K ++ +IVDLD HQGNG + F NE+R+F +
Sbjct: 129 FCMLNDQAIAANYLLAEKLATSVLIVDLDVHQGNGTAQIFENESRVFTFSMHGANNFPSR 188
Query: 312 KEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISP 371
KE + L T D +L ++ L + + PD I Y AG DVL +D LG LA+S
Sbjct: 189 KEKSDLDLPLPDGTSDDQFLSLLKNTLPQLIEQQKPDFIFYLAGVDVLESDKLGKLALSK 248
Query: 372 QGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
+ RD VF + + R+P+ + GGY Q I+
Sbjct: 249 EACKARDRFVFEQCMQNRIPVQVSMGGGYSPQIKDIV 285
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++ + A G + N+ GG HHA G GFC D ++ L K ++ +IVDL
Sbjct: 97 GTIDGCYFAFEHGVAFNVAGGTHHAGSNWGEGFCMLNDQAIAANYLLAEKLATSVLIVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|296112749|ref|YP_003626687.1| histone deacetylase [Moraxella catarrhalis RH4]
gi|295920443|gb|ADG60794.1| histone deacetylase family protein [Moraxella catarrhalis BBH18]
Length = 301
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 119/261 (45%), Gaps = 9/261 (3%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQK 211
L+ ITQDN+ P+ +SE+++L HT Y LK + + +P +
Sbjct: 32 LLTDGIITQDNLFHPELLSEQEILSTHTADYWHKLKTG---TLTDKEIRKIGLP---MSA 85
Query: 212 CYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS 271
++ RY T E A G S+++ GG HH G GFC + D+ + LL
Sbjct: 86 SLIKRERYITHATYECALYAKEYGISLSVSGGTHHGFADHGEGFCVFNDVCVASNLLLAR 145
Query: 272 KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQ 328
+ VDLD HQGNG N +F+ K IEL T+D
Sbjct: 146 GQAKRILSVDLDVHQGNGNASIMANNPAVFVFSMHGKKNYPFIKPPSDLDIELDDGTDDN 205
Query: 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER 388
YL + L + + +F PD++ Y AG DVL D LG L++S QG RD+LV A +
Sbjct: 206 AYLTILGKTLPKIIHNFDPDMLFYQAGVDVLATDKLGKLSLSLQGCYERDKLVLTTAHKA 265
Query: 389 RVPIVMLTSGGYLKQTARIIA 409
+P+ ++ GGY ++A
Sbjct: 266 GIPVAVVMGGGYSPDIETVVA 286
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 1 MEYGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMI 60
+ + T E A G S+++ GG HH G GFC + D+ + LL +
Sbjct: 94 ITHATYECALYAKEYGISLSVSGGTHHGFADHGEGFCVFNDVCVASNLLLARGQAKRILS 153
Query: 61 VDLDAHQ 67
VDLD HQ
Sbjct: 154 VDLDVHQ 160
>gi|311746918|ref|ZP_07720703.1| histone deacetylase family protein [Algoriphagus sp. PR1]
gi|126578609|gb|EAZ82773.1| histone deacetylase family protein [Algoriphagus sp. PR1]
Length = 300
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 127/257 (49%), Gaps = 17/257 (6%)
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLK-WSFNVAAISEVCPLVAVPNYFVQKCYLRPM 217
T+ N P+ V E ++ H +Y + L+ S + + I + F L
Sbjct: 39 TEANFFAPELVEERWIVNTHESEYWEKLRTLSLSKSEIRKTG--------FPLSSELVSR 90
Query: 218 RYHV-GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST 276
H+ G+++A A+ G +NI GG HHA +G GFC D+++ L ++K
Sbjct: 91 EVHIMAGSIQAAIYAIDYGIGMNIAGGTHHAFTNRGEGFCLLNDLAITANYLLENKLAKK 150
Query: 277 AMIVDLDAHQGNGYEKDFMNETRIFIMETCITSKA-----KEAIRCRIELAPYTEDQHYL 331
+I+DLD HQGNG + F +F + KA KE +EL +D YL
Sbjct: 151 VLIIDLDVHQGNGTAEIFQETPEVFTF--SMHGKANYPMHKEKSDLDVELDDGMKDFEYL 208
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
+ ++ L + L++F PD I+Y +G D+L D LG L++S QG+ RD +V A+E ++P
Sbjct: 209 KLLDENLNQVLKTFTPDFILYQSGVDILETDKLGRLSVSIQGLRTRDNMVLDLAKEMQIP 268
Query: 392 IVMLTSGGYLKQTARII 408
I+ GGY Q II
Sbjct: 269 IMCCMGGGYSPQIKDII 285
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+++A A+ G +NI GG HHA +G GFC D+++ L ++K +I+DL
Sbjct: 97 GSIQAAIYAIDYGIGMNIAGGTHHAFTNRGEGFCLLNDLAITANYLLENKLAKKVLIIDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|406706584|ref|YP_006756937.1| histone deacetylase family protein [alpha proteobacterium HIMB5]
gi|406652360|gb|AFS47760.1| histone deacetylase family protein [alpha proteobacterium HIMB5]
Length = 297
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 151/303 (49%), Gaps = 27/303 (8%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
P+V +Y F K+ H F K+ + YL E K + + I P S
Sbjct: 3 LPVVNHKDY---FAKIGDDHKFPINKFSELAKYLK--------EKKIVKE--FINPSPCS 49
Query: 171 EEQLLIAHTEKYLKSLK-WSFNVAAISEVC-PLVAVPNYFVQKCYLRPMRYHVGGTLEAG 228
E L AH+ Y+ ++K + + ++ PLV + V++ ++ GGT+ +
Sbjct: 50 IETLSKAHSLDYINNIKNKTLGKDGVKKIGFPLV---DSVVKRSFIA-----TGGTVLSA 101
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
LA++ G S N GG HHA+ G G+C + D+++ K L + + +IVDLD HQGN
Sbjct: 102 KLAIKSGISCNTAGGSHHANFDGGAGYCVFNDVAVAAKYLIERGLANKILIVDLDVHQGN 161
Query: 289 GYEKDFMNETRIFI--METCITSKAKEAI-RCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
G F ++ +F M + AK+++ +EL TED+ YL+K++ L+ L +
Sbjct: 162 GNADIFKDDNHVFTFSMHSKTNYPAKKSLSNYDVELEDNTEDKIYLDKLKQCLQE-LNQY 220
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
D + Y AG D+ ND LG L IS +G+ RD++V +R+P+ + GGY K
Sbjct: 221 FFDFVFYIAGVDIHYNDRLGKLKISDEGVRTRDQIVIENFFSQRIPLCGVLGGGYNKNFE 280
Query: 406 RII 408
+++
Sbjct: 281 KLV 283
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ + LA++ G S N GG HHA+ G G+C + D+++ K L + + +IVDL
Sbjct: 96 GTVLSAKLAIKSGISCNTAGGSHHANFDGGAGYCVFNDVAVAAKYLIERGLANKILIVDL 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|421779567|ref|ZP_16216059.1| histone deacetylase [Moraxella catarrhalis RH4]
gi|407813277|gb|EKF84059.1| histone deacetylase [Moraxella catarrhalis RH4]
Length = 301
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 119/261 (45%), Gaps = 9/261 (3%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQK 211
L+ ITQDN+ P+ +SE+++L HT Y LK + + +P +
Sbjct: 32 LLTDGIITQDNLFHPELLSEQEILSTHTADYWHKLKTG---TLTDKEIRKIGLP---MSA 85
Query: 212 CYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS 271
++ RY T E A G S+++ GG HH G GFC + D+ + LL
Sbjct: 86 SLIKRERYITHATYECALYAKEYGISLSVSGGTHHGFADHGEGFCVFNDVCVASNLLLAR 145
Query: 272 KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQ 328
+ VDLD HQGNG N +F+ K IEL T D+
Sbjct: 146 GQAKRILSVDLDVHQGNGNASIMANNPAVFVFSMHGKKNYPFIKPPSDLDIELDDGTGDE 205
Query: 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER 388
YL + L + + +F PD++ Y AG DVL D LG L++S QG RD+LV A +
Sbjct: 206 AYLTILSETLPKIIHNFDPDMLFYQAGVDVLATDKLGKLSLSLQGCYERDKLVLTTAHKA 265
Query: 389 RVPIVMLTSGGYLKQTARIIA 409
+P+ ++ GGY ++A
Sbjct: 266 GIPVAVVMGGGYSPDIETVVA 286
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 1 MEYGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMI 60
+ + T E A G S+++ GG HH G GFC + D+ + LL +
Sbjct: 94 ITHATYECALYAKEYGISLSVSGGTHHGFADHGEGFCVFNDVCVASNLLLARGQAKRILS 153
Query: 61 VDLDAHQ 67
VDLD HQ
Sbjct: 154 VDLDVHQ 160
>gi|416228420|ref|ZP_11627574.1| histone deacetylase family protein [Moraxella catarrhalis 46P47B1]
gi|326563755|gb|EGE14006.1| histone deacetylase family protein [Moraxella catarrhalis 46P47B1]
Length = 301
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 117/252 (46%), Gaps = 9/252 (3%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQK 211
L+ ITQDN+ P+ +SE+++L HT Y LK + + +P +
Sbjct: 32 LLTDGIITQDNLFHPELLSEQEILSTHTADYWHKLKTG---TLTDKEIRKIGLP---MSA 85
Query: 212 CYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS 271
++ RY T E A + G S+++ GG HH G GFC + D+ + LL
Sbjct: 86 SLIKRERYITHATYECALYAKKYGISLSVSGGTHHGFADHGEGFCVFNDVCVASNLLLAR 145
Query: 272 KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQ 328
+ VDLD HQGNG N +F+ K IEL T+D
Sbjct: 146 GQAKRILSVDLDVHQGNGNASIMANNPAVFVFSMHGKKNYPFIKPPSDLDIELDDGTDDN 205
Query: 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER 388
YL + L + + +F PD++ Y AG DVL D LG L++S QG RD+LV A +
Sbjct: 206 AYLTILGKTLPKIIHNFDPDMLFYQAGVDVLATDKLGKLSLSLQGCYERDKLVLTTAHKA 265
Query: 389 RVPIVMLTSGGY 400
+P+ ++ GGY
Sbjct: 266 GIPVAVVMGGGY 277
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%)
Query: 1 MEYGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMI 60
+ + T E A + G S+++ GG HH G GFC + D+ + LL +
Sbjct: 94 ITHATYECALYAKKYGISLSVSGGTHHGFADHGEGFCVFNDVCVASNLLLARGQAKRILS 153
Query: 61 VDLDAHQ 67
VDLD HQ
Sbjct: 154 VDLDVHQ 160
>gi|416155844|ref|ZP_11604137.1| histone deacetylase family protein [Moraxella catarrhalis 101P30B1]
gi|416217146|ref|ZP_11624095.1| histone deacetylase family protein [Moraxella catarrhalis 7169]
gi|416239194|ref|ZP_11631744.1| histone deacetylase family protein [Moraxella catarrhalis BC1]
gi|416250103|ref|ZP_11637112.1| histone deacetylase family protein [Moraxella catarrhalis CO72]
gi|326560997|gb|EGE11362.1| histone deacetylase family protein [Moraxella catarrhalis 7169]
gi|326567382|gb|EGE17497.1| histone deacetylase family protein [Moraxella catarrhalis BC1]
gi|326575226|gb|EGE25154.1| histone deacetylase family protein [Moraxella catarrhalis CO72]
gi|326576687|gb|EGE26594.1| histone deacetylase family protein [Moraxella catarrhalis 101P30B1]
Length = 301
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 120/261 (45%), Gaps = 9/261 (3%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQK 211
L+ ITQDN+ P+ +SE+++L HT Y LK + + +P +
Sbjct: 32 LLTDGIITQDNLFHPELLSEQEILSTHTADYWHKLKTG---TLTDKEIRKIGLP---MSA 85
Query: 212 CYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS 271
++ RY T E A + G S+++ GG HH G GFC + D+ + LL
Sbjct: 86 SLIKRERYITHATYECALYAKKYGISLSVSGGTHHGFADHGEGFCVFNDVCVASNLLLAR 145
Query: 272 KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQ 328
+ VDLD HQGNG N +F+ K IEL T D+
Sbjct: 146 GQAKRILSVDLDVHQGNGNASIMANNPAVFVFSMHGKKNYPFIKPPSDLDIELDDGTGDE 205
Query: 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER 388
YL + L + + +F PD++ Y AG DVL D LG L++S QG RD+LV A +
Sbjct: 206 AYLTILGKTLPKIIHNFDPDMLFYQAGVDVLATDKLGKLSLSLQGCYERDKLVLTTAYKA 265
Query: 389 RVPIVMLTSGGYLKQTARIIA 409
+P+ ++ GGY ++A
Sbjct: 266 GIPVTVVMGGGYSPDIETVVA 286
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%)
Query: 1 MEYGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMI 60
+ + T E A + G S+++ GG HH G GFC + D+ + LL +
Sbjct: 94 ITHATYECALYAKKYGISLSVSGGTHHGFADHGEGFCVFNDVCVASNLLLARGQAKRILS 153
Query: 61 VDLDAHQ 67
VDLD HQ
Sbjct: 154 VDLDVHQ 160
>gi|436836803|ref|YP_007322019.1| Histone deacetylase [Fibrella aestuarina BUZ 2]
gi|384068216|emb|CCH01426.1| Histone deacetylase [Fibrella aestuarina BUZ 2]
Length = 305
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 116/253 (45%), Gaps = 9/253 (3%)
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
T+ N P V + +L HT Y+ +LK A + P ++ +
Sbjct: 44 TEANFFAPSPVDDRWVLGVHTAGYVDALKTQTVDARMVRRIGFPMSPRLIEREWVI---- 99
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
GTL+A A R G ++N+ GG HHA G GFC D+ + L ++ +
Sbjct: 100 --TQGTLDATHHARRDGVAMNVAGGTHHAYPDHGEGFCLLNDVGVAAHYLLETGQARQIL 157
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIE 335
++DLD HQGNG F E R+F KE +ELA T D YL +
Sbjct: 158 VIDLDVHQGNGTAVMFQGEPRVFTFSMHGKDNYPLKKEQSDLDVELATGTRDDTYLNLLY 217
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
L R L PD + Y AG D+L D LG L +S G+ +RD+ VF +AR +PIV+
Sbjct: 218 DTLPRLLTDQQPDFLFYVAGVDILETDRLGRLGVSMTGVQQRDQFVFEEARRAGLPIVVS 277
Query: 396 TSGGYLKQTARII 408
GGY + A I+
Sbjct: 278 MGGGYSPRVADIV 290
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL+A A R G ++N+ GG HHA G GFC D+ + L ++ +++DL
Sbjct: 102 GTLDATHHARRDGVAMNVAGGTHHAYPDHGEGFCLLNDVGVAAHYLLETGQARQILVIDL 161
Query: 64 DAHQ 67
D HQ
Sbjct: 162 DVHQ 165
>gi|254428920|ref|ZP_05042627.1| Histone deacetylase family, putative [Alcanivorax sp. DG881]
gi|196195089|gb|EDX90048.1| Histone deacetylase family, putative [Alcanivorax sp. DG881]
Length = 302
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 136/300 (45%), Gaps = 36/300 (12%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY PEY+ F H F +K+ + +L + DN P
Sbjct: 3 PLVYHPEYS---FPFPGKHRFPMEKFARLHGHLRSRGIAH--------GDNEFRPGRAKA 51
Query: 172 EQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAG 228
L AH +Y+ ++ + + A+ + +P +++ + PM GTL
Sbjct: 52 TLLSQAHCPQYVSAMVDGTLDARALRRM----GLPWSEALMKRSCIAPM-----GTLMTA 102
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
LAL++G + ++ GG HHA G GFC + D + V+ L + A++ D D HQG+
Sbjct: 103 QLALQQGVACHLAGGTHHAHYNFGSGFCIFNDQAFAVRQLLDRGVVKKALMFDCDVHQGD 162
Query: 289 GYEKDFMNETRIFIMETCI--------TSKAKEAIRCRIELAPYTEDQHYLEKIEAGLER 340
G +E R F TC K K + + L DQ YL+ + L+R
Sbjct: 163 GTAAMLADEPRAF---TCSIHCEKNFPVRKMKSDLDVGLPLG--MTDQDYLDTVFETLDR 217
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
L PD++ Y+AG D+ +DPLG L IS QGI RD V + R+R VP+ + GGY
Sbjct: 218 LLDLVQPDLVFYDAGVDIFQHDPLGRLHISEQGIADRDRGVLARCRQRNVPVATVIGGGY 277
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL LAL++G + ++ GG HHA G GFC + D + V+ L + A++ D
Sbjct: 97 GTLMTAQLALQQGVACHLAGGTHHAHYNFGSGFCIFNDQAFAVRQLLDRGVVKKALMFDC 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|82705211|ref|XP_726876.1| histone deacetylase [Plasmodium yoelii yoelii 17XNL]
gi|23482464|gb|EAA18441.1| histone deacetylase/AcuC/AphA family protein, putative [Plasmodium
yoelii yoelii]
Length = 461
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 152/309 (49%), Gaps = 34/309 (11%)
Query: 108 TRPWPIVYRPEYNVHFFKLEK------LHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQD 161
++ P V+ P Y+ K+ K H F K+++IFNYL K + I ++
Sbjct: 142 SKNPPYVFHPIYSNAERKVNKSNRHIQTHRFKINKYENIFNYLNK-------REECIYEN 194
Query: 162 NIIEPQ-EVSE--EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
N I P ++S+ + L H+ ++ + FN+ +E L + N F R
Sbjct: 195 NYIIPSCDISKIKKSLFSIHSTNFINKM---FNIIKNNEEIKLYEL-NLFSD----LIAR 246
Query: 219 Y--HVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST 276
Y + GT+ + LAL+ ++IGGG HH+ KG GFC + DI++ V L K +
Sbjct: 247 YLIEINGTILSSLLALKHSMCMHIGGGNHHSKRDKGDGFCIFNDIAIAVDFLLFYKIVKN 306
Query: 277 AMIVDLDAHQGNGYEKDFMNETRIFIMET-CITS----KAKEAIRCRIELAPYTEDQHYL 331
+I+D+D HQG+G + F N + + C + K K I IEL Y ED YL
Sbjct: 307 VIILDVDVHQGDGTAEIFQNHQNVKTISLHCKNNYPFLKKKSTI--DIELNSYMEDNEYL 364
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
KI + +++ II Y AG D+ +D LGLL IS GI RD + + A + ++P
Sbjct: 365 -KIYQNILNNIKPQKNSIIFYLAGVDISKDDELGLLLISDHGIYTRDYITYQMAFKNKIP 423
Query: 392 IVMLTSGGY 400
I+ L SGGY
Sbjct: 424 IITLLSGGY 432
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ + LAL+ ++IGGG HH+ KG GFC + DI++ V L K + +I+D+
Sbjct: 253 GTILSSLLALKHSMCMHIGGGNHHSKRDKGDGFCIFNDIAIAVDFLLFYKIVKNVIILDV 312
Query: 64 DAHQ-------FSDYYFPSAHSIKRKRKVEFLKERKALEDEITS 100
D HQ F ++ S+ K FLK++ ++ E+ S
Sbjct: 313 DVHQGDGTAEIFQNHQNVKTISLHCKNNYPFLKKKSTIDIELNS 356
>gi|110636746|ref|YP_676953.1| deacetylase [Cytophaga hutchinsonii ATCC 33406]
gi|110279427|gb|ABG57613.1| deacetylase [Cytophaga hutchinsonii ATCC 33406]
Length = 300
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 138/301 (45%), Gaps = 24/301 (7%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYL-WKHIFNYLVEAKFITQDNIIEPQEVSE 171
I Y P YN HP H F L + I LV IT+ N+ P ++
Sbjct: 4 IAYHPVYN---------HPV---PEGHRFPMLKYDLIAEQLVYEGTITESNLTTPVRIAS 51
Query: 172 EQLLIAHTEKYLKSLK-WSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
E LL + Y+ L S + + I + + + ++ ++ GT+++
Sbjct: 52 EDLLRSQDATYVHKLNTLSLSPSEIRKTGFELTAELVYREEVIMQ-------GTIDSALH 104
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL+ G +NI GG HHA + G GFC Y DI L L +K ++VDLD HQGNG
Sbjct: 105 ALKHGIGMNIAGGTHHAYKEHGEGFCLYNDIILAADYLLANKLAHQVLVVDLDVHQGNGT 164
Query: 291 EKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
K T+IF S KE I L T D+ YL +E L R + + P
Sbjct: 165 AKMAEGNTQIFTFSMHGASNYPAHKEQSDLDIGLPDKTGDKAYLNLLEENLSRLIDTLQP 224
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D I + +G DVL D LG L++S +G RD +V + ++ ++P+ + GGY ++ I
Sbjct: 225 DHIFFQSGVDVLETDKLGKLSLSREGCKNRDRMVLDRCKKYKIPVTISLGGGYSEKIIDI 284
Query: 408 I 408
+
Sbjct: 285 V 285
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+++ AL+ G +NI GG HHA + G GFC Y DI L L +K ++VDL
Sbjct: 97 GTIDSALHALKHGIGMNIAGGTHHAYKEHGEGFCLYNDIILAADYLLANKLAHQVLVVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|398348063|ref|ZP_10532766.1| deacetylase [Leptospira broomii str. 5399]
Length = 330
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 148/312 (47%), Gaps = 26/312 (8%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
++Y PEYN+ H F ++K+ I+N + E ++ ++P V E
Sbjct: 38 LIYHPEYNMDL----GAHVFPARKYGMIYNLVK--------EDPKLSGLLALQPAPVGVE 85
Query: 173 QLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+L + HT ++L + + + PL K +R VGGT+ A
Sbjct: 86 ELSLVHTPEFLSDFMNLRYTDRTMYSELPL--------NKEIVRSFCLGVGGTILATETT 137
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
+ +IGGGFHH+ + GFC D ++ KL Q + +DLD HQGNG
Sbjct: 138 ENYKYVYHIGGGFHHSMPDRAEGFCYLNDAAVATKLYLQKYPDKKVLYIDLDLHQGNGNA 197
Query: 292 KDFMNETRI--FIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDI 349
K F ++ + F M KE I L T+D+ YL+ + GL+++ +F PD+
Sbjct: 198 KVFKDDPSVWTFSMHQEQLYPKKELSSLDIPLENGTDDKTYLKALAEGLDKTRANFTPDL 257
Query: 350 IVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ---TAR 406
I Y AG D +D LG L ++ +G+ +RD++V A VP+V+L +GGY + T R
Sbjct: 258 IYYFAGADPFEDDSLGDLKLTFEGLKKRDKIVKEFADSLDVPVVILPAGGYARNFHDTVR 317
Query: 407 IIADSILNLADL 418
I ++I A L
Sbjct: 318 IHFNTIRVFASL 329
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A + +IGGGFHH+ + GFC D ++ KL Q + +DL
Sbjct: 129 GTILATETTENYKYVYHIGGGFHHSMPDRAEGFCYLNDAAVATKLYLQKYPDKKVLYIDL 188
Query: 64 DAHQ 67
D HQ
Sbjct: 189 DLHQ 192
>gi|313674860|ref|YP_004052856.1| histone deacetylase [Marivirga tractuosa DSM 4126]
gi|312941558|gb|ADR20748.1| Histone deacetylase [Marivirga tractuosa DSM 4126]
Length = 300
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 122/254 (48%), Gaps = 9/254 (3%)
Query: 158 ITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPM 217
+T+ + P +SEE +L HT +Y + LK N+ + P + +
Sbjct: 38 VTESSFFSPNLLSEEDILAVHTNEYWQKLK---NLTLSRKEERRTGFP---LSAALIERE 91
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
R GT++A AL G ++NI GG HHA +G GFC DI++ + L ++ +S
Sbjct: 92 RIINQGTIDAANFALEYGVAMNIAGGTHHAFTDRGEGFCLLNDIAIAAQYLLKNAKVSKI 151
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
++VDLD HQGNG + F + +F KE IE+ T+D+ YL +
Sbjct: 152 LVVDLDVHQGNGTAEIFRDNPDVFTFSMHGKGNYPMHKERSDLDIEMEDKTDDKTYLTVL 211
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
L + + PD I + +G DVL D LG L ++ G RD++VF +P+V
Sbjct: 212 RENLPKLIDDEQPDFIFFQSGVDVLATDKLGRLGMTINGCKERDKIVFEHCHLNEIPVVA 271
Query: 395 LTSGGYLKQTARII 408
GGY ++ A II
Sbjct: 272 SMGGGYSEKIAHII 285
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++A AL G ++NI GG HHA +G GFC DI++ + L ++ +S ++VDL
Sbjct: 97 GTIDAANFALEYGVAMNIAGGTHHAFTDRGEGFCLLNDIAIAAQYLLKNAKVSKILVVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|227539670|ref|ZP_03969719.1| possible histone deacetylase [Sphingobacterium spiritivorum ATCC
33300]
gi|227240312|gb|EEI90327.1| possible histone deacetylase [Sphingobacterium spiritivorum ATCC
33300]
Length = 334
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 117/260 (45%), Gaps = 9/260 (3%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQK 211
L+ +++D+ EP+ +SEE +AH E Y++ L F + + + + P +
Sbjct: 65 LIHEGLVSKDSFFEPELISEEIACLAHDESYVRDL---FELTLDARMIRRIGFP---LTD 118
Query: 212 CYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS 271
+R R V GT+ A++ G + N+ GG HHA G GFC D ++ L
Sbjct: 119 SLIRRERLIVDGTIRTALFAMQYGIAFNVAGGTHHAGHAYGEGFCLLNDQAIAAAYLLAE 178
Query: 272 KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQ 328
+ + +I+DLD HQGNG F +F KE I L D+
Sbjct: 179 QKVHKILIIDLDVHQGNGTANIFKGSKEVFTFSMHGAKNFPFIKEQSHLDINLEDGITDK 238
Query: 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER 388
+YL ++ L PD + Y AG DVL D LG L +SP+ RD +V R+
Sbjct: 239 NYLSQLTTVLPDLFEKVAPDFVFYQAGVDVLATDKLGKLKLSPEACKERDYIVLSLCRQL 298
Query: 389 RVPIVMLTSGGYLKQTARII 408
+P+ + GGY + I+
Sbjct: 299 DIPVQVSMGGGYSEHIRDIV 318
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 11/123 (8%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A++ G + N+ GG HHA G GFC D ++ L + + +I+DL
Sbjct: 130 GTIRTALFAMQYGIAFNVAGGTHHAGHAYGEGFCLLNDQAIAAAYLLAEQKVHKILIIDL 189
Query: 64 DAHQ-------FSDYYFPSAHSIKRKRKVEFLKERK----ALEDEITSEPQESVVTRPWP 112
D HQ F S+ + F+KE+ LED IT + S +T P
Sbjct: 190 DVHQGNGTANIFKGSKEVFTFSMHGAKNFPFIKEQSHLDINLEDGITDKNYLSQLTTVLP 249
Query: 113 IVY 115
++
Sbjct: 250 DLF 252
>gi|113954553|ref|YP_729977.1| histone deacetylase [Synechococcus sp. CC9311]
gi|113881904|gb|ABI46862.1| histone deacetylase family protein [Synechococcus sp. CC9311]
Length = 304
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 131/293 (44%), Gaps = 22/293 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ L H F K++ + L + +T P
Sbjct: 4 PLVYHPAYSA---PLPSSHRFPMAKFRLLSEAL--------TDLGLMTPQQWHRPLPAPR 52
Query: 172 EQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
L H Y ++ + + A + P VQ+ +L VGGTL L
Sbjct: 53 RWLETVHKRSYHEAFARGRLDRQAQRRIGLPATTP--LVQRTWLA-----VGGTLLTARL 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G + ++ GG HHA G GFC + DI++ ++L + + MIVDLD HQG+
Sbjct: 106 ALEHGVACHLAGGTHHAFPDYGSGFCIFNDIAVSARVLLEEGRLERLMIVDLDVHQGDAT 165
Query: 291 EKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
F ++ R+F S K+ C + EDQ Y+ I L L SF P
Sbjct: 166 ALIFADDPRVFTFSAHAASNFPSRKQCSDCDLPFEDGVEDQAYVAAIGEALPSLLDSFKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
++++YNAG D +D LG L +S G+++RD LVF R++P+ + GGY
Sbjct: 226 ELVLYNAGVDPHRDDRLGRLCLSDPGLLQRDHLVFDACLRRQIPLASVIGGGY 278
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL LAL G + ++ GG HHA G GFC + DI++ ++L + + MIVDL
Sbjct: 98 GTLLTARLALEHGVACHLAGGTHHAFPDYGSGFCIFNDIAVSARVLLEEGRLERLMIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|443693723|gb|ELT95017.1| hypothetical protein CAPTEDRAFT_228874 [Capitella teleta]
Length = 308
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 128/292 (43%), Gaps = 20/292 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PI++ +Y L + H F +K+ + YL + + IT + P EVS
Sbjct: 7 PIIHHHDY---VSTLPRKHRFAMRKFHGVLEYLKR--------DQVITMKQVHSPDEVSH 55
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E + H+E+Y+ A V ++C R GGTL + LA
Sbjct: 56 ETAALVHSEEYIHKFFHGLTDAKEQRRTGFVWDEG-LARRC-----RLEAGGTLLSTQLA 109
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
RG + N GGG HHA G GFC D+++ K ++ + +IVDLD HQG+G
Sbjct: 110 RERGLACNTGGGTHHAFRDYGSGFCLINDMAIAAKYALKAGIVERVLIVDLDVHQGDGTA 169
Query: 292 KDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
K NE IF K+ I L D YL + L L+SF PD
Sbjct: 170 KILENEECIFTFSMHSAKNFPFEKQKSDLDIALEDGLGDHEYLSILHDHLPSILQSFRPD 229
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
+++Y+AG D + D LG L ++ QG+ RD V + R +P + GGY
Sbjct: 230 MVIYDAGVDPHVKDELGKLNLTDQGLFDRDYYVMNECIRRGIPCATVIGGGY 281
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL + LA RG + N GGG HHA G GFC D+++ K ++ + +IVDL
Sbjct: 101 GTLLSTQLARERGLACNTGGGTHHAFRDYGSGFCLINDMAIAAKYALKAGIVERVLIVDL 160
Query: 64 DAHQ 67
D HQ
Sbjct: 161 DVHQ 164
>gi|404448059|ref|ZP_11013053.1| deacetylase [Indibacter alkaliphilus LW1]
gi|403766645|gb|EJZ27517.1| deacetylase [Indibacter alkaliphilus LW1]
Length = 300
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 124/254 (48%), Gaps = 9/254 (3%)
Query: 158 ITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPM 217
+ +N P + E + H YL+ LK N P + +
Sbjct: 38 VKDENFFSPDALEERWITNTHQRDYLEKLK---NQTLTKSEIRKTGFP---LSDALVERE 91
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
+ + G+++A AL G ++NI GG HHA +G GFC DI++ L ++
Sbjct: 92 IHIMHGSVKAALYALEYGVAMNIAGGTHHAFTDRGEGFCLLNDIAITANYLLENDLSHKI 151
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
++VDLD HQGNG + F N+ R+F S KE + L ED+ YL+ +
Sbjct: 152 LVVDLDVHQGNGTAEIFQNDNRVFTFSMHGASNYPMHKEKSDLDVGLPDKIEDKAYLKIL 211
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
+ L+ L+ PD +++ +G DVL +D LG L +S QG RD++VF A+E + PI+
Sbjct: 212 DVHLKSLLQKVEPDFMIFQSGVDVLESDKLGRLGLSIQGCRERDKMVFEVAQENQTPIMC 271
Query: 395 LTSGGYLKQTARII 408
GGY ++ ++II
Sbjct: 272 CMGGGYSERISQII 285
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 3 YGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 62
+G+++A AL G ++NI GG HHA +G GFC DI++ L ++ ++VD
Sbjct: 96 HGSVKAALYALEYGVAMNIAGGTHHAFTDRGEGFCLLNDIAITANYLLENDLSHKILVVD 155
Query: 63 LDAHQ 67
LD HQ
Sbjct: 156 LDVHQ 160
>gi|119584566|gb|EAW64162.1| histone deacetylase 11, isoform CRA_f [Homo sapiens]
Length = 113
Score = 129 bits (324), Expect = 3e-27, Method: Composition-based stats.
Identities = 62/114 (54%), Positives = 84/114 (73%), Gaps = 11/114 (9%)
Query: 227 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAH 285
AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+DLDAH
Sbjct: 2 AGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAH 61
Query: 286 QGNGYEKDFMNETRIFIMETCITSK--------AKEAIRCRIELAPYTEDQHYL 331
QGNG+E+DFM++ R++IM+ + ++ AK+AIR ++EL TED YL
Sbjct: 62 QGNGHERDFMDDKRVYIMD--VYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYL 113
Score = 91.3 bits (225), Expect = 9e-16, Method: Composition-based stats.
Identities = 40/61 (65%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
Query: 8 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAH 66
AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+DLDAH
Sbjct: 2 AGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAH 61
Query: 67 Q 67
Q
Sbjct: 62 Q 62
>gi|392310191|ref|ZP_10272725.1| histone deacetylase [Pseudoalteromonas citrea NCIMB 1889]
Length = 302
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 142/301 (47%), Gaps = 25/301 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ F + H F K+ ++++Y V+ + + +N+ +P+ +
Sbjct: 8 PLVYHPNYS---FSFDPKHRFVMSKFANLYHY---------VQQQGLITNNLYQPELGAP 55
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGF 229
L + H E YL L W ++ +V + +P + + + P+ GTL+
Sbjct: 56 SHLELVHCESYLWDL-WHNQLS--DKVMRRIGLPWSEALMARTFTAPL-----GTLKTAE 107
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL G + ++ GG HHA G GFC D++ L ++K ++ +I DLD HQG+G
Sbjct: 108 LALEHGIACHLAGGTHHAHYDFGSGFCMVNDLAFTATTLVKNKKVNNVLIFDLDVHQGDG 167
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
++ +F K I LA D YL+ ++ LE +
Sbjct: 168 TAAMLKHDPYVFTCSVHCEKNFPFRKHDSDLDIGLANNLSDTRYLDIVKNTLEGLISDLN 227
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
PD+++Y+AG DV +D LG L I+ QG+ +RD LV + +P+ + GGY + R
Sbjct: 228 PDLVLYDAGVDVWEHDGLGKLDITWQGLEKRDALVLSTCQNAGIPVATVIGGGYDRDHKR 287
Query: 407 I 407
+
Sbjct: 288 L 288
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL+ LAL G + ++ GG HHA G GFC D++ L ++K ++ +I DL
Sbjct: 101 GTLKTAELALEHGIACHLAGGTHHAHYDFGSGFCMVNDLAFTATTLVKNKKVNNVLIFDL 160
Query: 64 DAHQ 67
D HQ
Sbjct: 161 DVHQ 164
>gi|77361149|ref|YP_340724.1| histone deacetylase [Pseudoalteromonas haloplanktis TAC125]
gi|76876060|emb|CAI87282.1| putative histone deacetylase family protein [Pseudoalteromonas
haloplanktis TAC125]
Length = 302
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 137/301 (45%), Gaps = 25/301 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ F + H F K+ H++ + V+ + DN+++P +
Sbjct: 8 PLVYHPNYS---FSFDPKHRFVMSKFAHLYQH---------VKQLGLVGDNLVQPLLGTP 55
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGF 229
E L + H E Y+ L ++ + + +P + + + P GTL+
Sbjct: 56 EALELVHCENYIHDL---YHNQLDEKAMRRIGLPWSKELMARTFTAPQ-----GTLQTAR 107
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL+ G + ++ GG HHA G G+C D++ + L +S ++ +I DLD HQG+G
Sbjct: 108 LALKHGMACHLAGGTHHAHTDFGSGYCMVNDLAFTTQTLIESGEVTNVLIFDLDVHQGDG 167
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
++ + K I L +D YL ++ L+ L+
Sbjct: 168 TAAMLQHQPYAYTCSIHCEKNFPFRKSPSDLDIGLTNNMQDAEYLGIVDDTLQFLLKELN 227
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
PD+++Y+AG DV D LG L IS QGI +RD LV + E P+ + GGY + R
Sbjct: 228 PDLVLYDAGVDVWQQDGLGKLDISWQGIEQRDHLVLKRCLEHNTPVATVIGGGYDRDHQR 287
Query: 407 I 407
+
Sbjct: 288 L 288
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL+ LAL+ G + ++ GG HHA G G+C D++ + L +S ++ +I DL
Sbjct: 101 GTLQTARLALKHGMACHLAGGTHHAHTDFGSGYCMVNDLAFTTQTLIESGEVTNVLIFDL 160
Query: 64 DAHQFSD-----YYFPSAH--SIKRKRKVEFLKERKALEDEITSEPQES 105
D HQ + P A+ SI ++ F K L+ +T+ Q++
Sbjct: 161 DVHQGDGTAAMLQHQPYAYTCSIHCEKNFPFRKSPSDLDIGLTNNMQDA 209
>gi|416241930|ref|ZP_11633064.1| histone deacetylase family protein [Moraxella catarrhalis BC7]
gi|326571491|gb|EGE21506.1| histone deacetylase family protein [Moraxella catarrhalis BC7]
Length = 301
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 116/252 (46%), Gaps = 9/252 (3%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQK 211
L+ ITQDN+ P+ +SE+++L HT Y LK + + +P +
Sbjct: 32 LLTDGIITQDNLFHPELLSEQEILSTHTADYWHKLKTG---TLTDKEIRKIGLP---MSA 85
Query: 212 CYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS 271
++ RY T E A G S+++ GG HH G GFC + D+ + LL
Sbjct: 86 SLIKRERYITHATYECALYAKEYGISLSVSGGTHHGFADHGEGFCVFNDVCVASNLLLAR 145
Query: 272 KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQ 328
+ VDLD HQGNG N +F+ K IEL T+D
Sbjct: 146 GQAKRILSVDLDVHQGNGNASIMANNPAVFVFSMHGKKNYPFIKPPSDLDIELDDGTDDN 205
Query: 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER 388
YL + L + + +F PD++ Y AG DVL D LG L++S QG RD+LV A +
Sbjct: 206 AYLTILGKTLPKIIHNFDPDMLFYQAGVDVLATDKLGKLSLSLQGCYERDKLVLTTAHKA 265
Query: 389 RVPIVMLTSGGY 400
+P+ ++ GGY
Sbjct: 266 GIPVAVVMGGGY 277
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 1 MEYGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMI 60
+ + T E A G S+++ GG HH G GFC + D+ + LL +
Sbjct: 94 ITHATYECALYAKEYGISLSVSGGTHHGFADHGEGFCVFNDVCVASNLLLARGQAKRILS 153
Query: 61 VDLDAHQ 67
VDLD HQ
Sbjct: 154 VDLDVHQ 160
>gi|392404048|ref|YP_006440660.1| histone deacetylase superfamily [Turneriella parva DSM 21527]
gi|390612002|gb|AFM13154.1| histone deacetylase superfamily [Turneriella parva DSM 21527]
Length = 294
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 145/301 (48%), Gaps = 31/301 (10%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
+VY P Y++ + H + K++ +++ L KF ++ N EP ++E
Sbjct: 8 LVYSPIYDLSDYT----HVISAGKYRQLYDAL-----------KF-SRWNWNEPVAATKE 51
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
QLL+ HTE+YLK F A ++E +P + + + + GGT+ A LAL
Sbjct: 52 QLLLVHTERYLKD----FLGARLTEQTQRAEIP---IDERIVNAVCTAAGGTILAAELAL 104
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
+ G + N+ GGFHHA GFC D L ++ L +++ ++DLD HQGNG K
Sbjct: 105 KHGVASNLSGGFHHAFADHAEGFCFVNDTVLAIRALRKTRPGLKVAVIDLDVHQGNGTAK 164
Query: 293 DFMNE--TRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
+ + F M KE +EL + D YL + L++ +F PD+I
Sbjct: 165 LLQGDENSYTFSMHEKENYPVKETGSHDVELPSHLGDAEYLRLLAENLDKLKAAFFPDLI 224
Query: 351 VYNAGTDVLLNDPLGLLAISPQGIIRRDELV--FMKARERRVPIVMLTSGGYLKQTARII 408
Y AG D+ +D LG L +S GI RD V F+ VP V+L +GGY + A +
Sbjct: 225 FYVAGVDIYRDDALGGLQLSFDGIAARDAAVRDFLP----EVPKVVLPAGGYARNIAETV 280
Query: 409 A 409
A
Sbjct: 281 A 281
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LAL+ G + N+ GGFHHA GFC D L ++ L +++ ++DL
Sbjct: 95 GTILAAELALKHGVASNLSGGFHHAFADHAEGFCFVNDTVLAIRALRKTRPGLKVAVIDL 154
Query: 64 DAHQ 67
D HQ
Sbjct: 155 DVHQ 158
>gi|149371070|ref|ZP_01890665.1| histone deacetylase superfamily protein [unidentified eubacterium
SCB49]
gi|149355856|gb|EDM44414.1| histone deacetylase superfamily protein [unidentified eubacterium
SCB49]
Length = 300
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 121/263 (46%), Gaps = 11/263 (4%)
Query: 150 NYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYF 208
YL++ T DN EPQ+VSE +L HTE Y + L K + + ++ +
Sbjct: 30 QYLLDQGICTLDNFFEPQKVSEASILKVHTEDYYRRLLKLEIDKKEVRKM-------GFP 82
Query: 209 VQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLL 268
++K + Y + GT++ A+ G S+N GG HHA G FC D ++ + L
Sbjct: 83 LRKALVDRGHYIIDGTIKGCEYAIEYGVSMNSAGGTHHAYADHGEAFCLLNDQAVAARHL 142
Query: 269 FQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYT 325
+IVDLD HQGNG K F N+ R+F K+ I L T
Sbjct: 143 LDLGIAKQVLIVDLDVHQGNGTAKIFENDDRVFTFSMHGAKNYPFKKDRSDLDIGLDDGT 202
Query: 326 EDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKA 385
ED YLE + L + ++ PD I Y +G D+L D LG L+ + +G RD V
Sbjct: 203 EDAEYLEVLYNTLPKLIKKVNPDFIFYLSGVDILKTDKLGRLSCTIEGSKERDRFVLQTC 262
Query: 386 RERRVPIVMLTSGGYLKQTARII 408
++ +P+ + GGY II
Sbjct: 263 KDHNIPVQISMGGGYSPDIDLII 285
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++ A+ G S+N GG HHA G FC D ++ + L +IVDL
Sbjct: 97 GTIKGCEYAIEYGVSMNSAGGTHHAYADHGEAFCLLNDQAVAARHLLDLGIAKQVLIVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|427420410|ref|ZP_18910593.1| deacetylase, histone deacetylase/acetoin utilization protein
[Leptolyngbya sp. PCC 7375]
gi|425763123|gb|EKV03976.1| deacetylase, histone deacetylase/acetoin utilization protein
[Leptolyngbya sp. PCC 7375]
Length = 305
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 136/300 (45%), Gaps = 20/300 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P+Y L H F K++ + + L V I+++ I +P
Sbjct: 5 PVIYHPDY---VTPLPAGHRFPMPKFQLLRDLL--------VRDGVISEEQIYQPGRPPR 53
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ L + H Y+++ A L + C VGGT+ LA
Sbjct: 54 DWLELVHDSPYVQAYCDGGLDAKAQRRIGLPWSAELVRRTCTA------VGGTILTAKLA 107
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L +G + N GG HHA G GFC + DI++ +LL + T ++VDLD HQG+G
Sbjct: 108 LNQGLACNTAGGTHHAFPGYGAGFCIFNDIAIATRLLKAQNLLQTVLVVDLDVHQGDGTA 167
Query: 292 KDFMNETRIFIMET-CITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
F ++ +F C + K+ + L TED YL K+EA L L PD
Sbjct: 168 WIFRDDPSVFTFSMHCAVNFPGRKQTSDLDVPLDEGTEDDEYLAKLEAHLPDLLAQVKPD 227
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
+++Y+AG D +D LG LA++ +G+ RRD V + R P+ + GGY K +I
Sbjct: 228 LVLYDAGADPHRDDRLGKLALTDEGLYRRDWYVLETCAKARYPVACVIGGGYGKDMNALI 287
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL +G + N GG HHA G GFC + DI++ +LL + T ++VDL
Sbjct: 99 GTILTAKLALNQGLACNTAGGTHHAFPGYGAGFCIFNDIAIATRLLKAQNLLQTVLVVDL 158
Query: 64 DAHQ 67
D HQ
Sbjct: 159 DVHQ 162
>gi|416220187|ref|ZP_11625279.1| histone deacetylase family protein [Moraxella catarrhalis 103P14B1]
gi|326566775|gb|EGE16914.1| histone deacetylase family protein [Moraxella catarrhalis 103P14B1]
Length = 301
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 117/252 (46%), Gaps = 9/252 (3%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQK 211
L+ ITQDN+ P+ +SE+++L HT Y LK + + +P +
Sbjct: 32 LLTDGIITQDNLFHPELLSEQEILSTHTADYWHKLKTG---TLTDKEIRKIGLP---MSA 85
Query: 212 CYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS 271
++ RY T E A + G S+++ GG HH G GFC + D+ + LL
Sbjct: 86 SLIKRERYITHATYECALYAKKYGISLSVSGGTHHGFADHGEGFCVFNDVCVASNLLLAR 145
Query: 272 KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQ 328
+ VDLD HQGNG N +F+ K IEL T D+
Sbjct: 146 GQAKRILSVDLDVHQGNGNASIMANNPAVFVFSMHGKKNYPFIKPPSDLDIELDDGTGDE 205
Query: 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER 388
YL + L + + +F PD++ Y AG DVL D LG L++S QG RD+LV A +
Sbjct: 206 AYLTILGKTLPKIIHNFDPDMLFYQAGVDVLATDKLGKLSLSLQGCYERDKLVLTTAYKA 265
Query: 389 RVPIVMLTSGGY 400
+P+ ++ GGY
Sbjct: 266 GIPVTVVMGGGY 277
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%)
Query: 1 MEYGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMI 60
+ + T E A + G S+++ GG HH G GFC + D+ + LL +
Sbjct: 94 ITHATYECALYAKKYGISLSVSGGTHHGFADHGEGFCVFNDVCVASNLLLARGQAKRILS 153
Query: 61 VDLDAHQ 67
VDLD HQ
Sbjct: 154 VDLDVHQ 160
>gi|408373839|ref|ZP_11171532.1| deacetylase [Alcanivorax hongdengensis A-11-3]
gi|407766333|gb|EKF74777.1| deacetylase [Alcanivorax hongdengensis A-11-3]
Length = 313
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 133/298 (44%), Gaps = 32/298 (10%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY PEY+ F H F +K+ + YL T DN P
Sbjct: 3 PLVYHPEYS---FPFPGAHRFPMEKFGRLHGYLRGQ--------GIATADNTFRPGRARP 51
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAG 228
L H Y+ + L+ + A + +P V++ + PM GTL
Sbjct: 52 ALLGRVHCPDYVSAVLENRLDDRARRRM----GLPWSEALVKRTCIAPM-----GTLLTA 102
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
LAL++G + ++ GG HHA G GFC + D++ +LL S ++ +I D D HQG+
Sbjct: 103 QLALKQGLACHLAGGTHHAYRDFGSGFCLFNDLAFAARLLLDSAAVDRLLIFDCDVHQGD 162
Query: 289 GYEKDFMNETRIFIMETC-ITSKAKEAIRCR-----IELAPYTEDQHYLEKIEAGLERSL 342
G +E R F TC I + +R + + L P D YL + L+ L
Sbjct: 163 GTAAMLADEPRAF---TCSIHCEKNFPVRKQNSDLDVGLPPGMTDGDYLATVFETLDGLL 219
Query: 343 RSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
P +++Y+AG D+ DPLG L IS GI RD V + R+R VP+ + GGY
Sbjct: 220 DRVEPQLVLYDAGVDIYAGDPLGRLQISEAGIAERDGGVLQRCRQRGVPVATVIGGGY 277
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL LAL++G + ++ GG HHA G GFC + D++ +LL S ++ +I D
Sbjct: 97 GTLLTAQLALKQGLACHLAGGTHHAYRDFGSGFCLFNDLAFAARLLLDSAAVDRLLIFDC 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|410614773|ref|ZP_11325811.1| histone deacetylase family protein [Glaciecola psychrophila 170]
gi|410165622|dbj|GAC39700.1| histone deacetylase family protein [Glaciecola psychrophila 170]
Length = 298
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 145/302 (48%), Gaps = 24/302 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+V+ P Y+ L H F +K++ I + L A + DN P +S
Sbjct: 3 PLVFHPIYSQ--LDLPVRHRFPVEKYQGIRDGL---------AAMGVANDNFHIPTPISP 51
Query: 172 EQLLIAHTEKYLKSL-KWSFNVAAISEVC-PLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
+ L +Y++ L + + A+ + P A +Q+ VGGT+
Sbjct: 52 KDLRQVFNPQYVQQLVDGTLDGKAMRRIGFPWSA---QLIQRTLTA-----VGGTVLTAR 103
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL G ++N+ GG+HHA G GFC + D+ L + +S +I +I D D HQG+G
Sbjct: 104 LALEHGKALNLTGGYHHAFANYGSGFCLFNDLYLAALSMLKSPNIDKVLIFDCDVHQGDG 163
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
K N T+I+ + K+ L T+D YL+ +++ L ++ ++
Sbjct: 164 TAKLAENNTQIYTVSLHAEKNFPYRKQHSNMDFNLLKGTQDSEYLDTVDSALHLAINTYQ 223
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
PD ++Y+AG D+ ++D LG L I+ +G+ +RD LVF + + +PI + GGY +
Sbjct: 224 PDAVIYDAGVDIHIDDDLGHLHITTEGVYQRDCLVFDTCKHKGLPIAAVIGGGYQRNIKA 283
Query: 407 II 408
++
Sbjct: 284 LV 285
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G ++N+ GG+HHA G GFC + D+ L + +S +I +I D
Sbjct: 97 GTVLTARLALEHGKALNLTGGYHHAFANYGSGFCLFNDLYLAALSMLKSPNIDKVLIFDC 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|359455670|ref|ZP_09244881.1| histone deacetylase family protein [Pseudoalteromonas sp. BSi20495]
gi|414071985|ref|ZP_11407941.1| histone deacetylase family protein [Pseudoalteromonas sp. Bsw20308]
gi|358047293|dbj|GAA81130.1| histone deacetylase family protein [Pseudoalteromonas sp. BSi20495]
gi|410805565|gb|EKS11575.1| histone deacetylase family protein [Pseudoalteromonas sp. Bsw20308]
Length = 297
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 129/260 (49%), Gaps = 11/260 (4%)
Query: 153 VEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQK 211
+E +T +N P + + QL + H + Y+ + L + + AI ++ N V++
Sbjct: 32 IEGLGLTPNNFTSPIKATPAQLSLCHNQTYINNFLNGTLSNKAIKKMG--FPYSNELVER 89
Query: 212 CYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS 271
L VG ++++ AL+ G+S N+ GG+HHA G GFC + D+++ L +
Sbjct: 90 TLLS-----VGASIQSSEHALKHGFSANLSGGYHHAYSDYGSGFCIFNDLAIAAAHLINT 144
Query: 272 KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET-CITS--KAKEAIRCRIELAPYTEDQ 328
+ T +I D D HQG+G + N +I C + + K+ L T D
Sbjct: 145 EQADTVLIFDCDVHQGDGTAQITQNHDQIITCSIHCEQNFPRNKQQSTYDFALPAKTTDA 204
Query: 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER 388
YL ++ L+ +R PDII+YNAG D+ D LGLL +S G+ +RD V +++
Sbjct: 205 EYLTTLKQALDFCVRIHNPDIILYNAGADIYEKDELGLLNVSLNGVYKRDFFVLNFCKQQ 264
Query: 389 RVPIVMLTSGGYLKQTARII 408
++P++ GGY + ++
Sbjct: 265 KIPLMCSLGGGYQRNLTSLV 284
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL+ G+S N+ GG+HHA G GFC + D+++ L ++ T +I D D HQ
Sbjct: 104 ALKHGFSANLSGGYHHAYSDYGSGFCIFNDLAIAAAHLINTEQADTVLIFDCDVHQ 159
>gi|116621031|ref|YP_823187.1| histone deacetylase superfamily protein [Candidatus Solibacter
usitatus Ellin6076]
gi|116224193|gb|ABJ82902.1| histone deacetylase superfamily [Candidatus Solibacter usitatus
Ellin6076]
Length = 299
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/285 (30%), Positives = 142/285 (49%), Gaps = 23/285 (8%)
Query: 120 NVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHT 179
+ H L H F ++K+ + + L EA+ + P E++ QL +AH
Sbjct: 11 DQHPIPLPPGHKFPTQKYAMLRSKL---------EAEHRFELTPAPPAEIA--QLELAHE 59
Query: 180 EKYLKSLKWSFNVAAISEVCPLVAVPNYFV-QKCYLRPMRYHVGGTLEAGFLALRRGWSI 238
E+Y++++ +V P V F + +R VGGTL A A+ G
Sbjct: 60 EQYVRAILHG-------DVDPRVMRRIGFPWSEALVRRTLASVGGTLAASRDAMESGLGG 112
Query: 239 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNET 298
N+ GG HHA +G GFC + D+++ + +L + + A ++DLD HQG+G F ++
Sbjct: 113 NLAGGTHHAFRAEGSGFCVFNDLAVAILMLRREGLAARAAVIDLDVHQGDGTASIFESDP 172
Query: 299 RIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAG 355
+ + + K+ R I L+ T D Y+ +++ L L +F P++++Y AG
Sbjct: 173 SVLTVSIHGENNFPFRKQRSRIDIGLSDGTSDDEYISHVQSMLPVVL-AFQPEVMLYQAG 231
Query: 356 TDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
D L +D LG LA++ QG+ RRD LV AR R+P+V+ GGY
Sbjct: 232 VDGLASDRLGRLALTQQGLARRDRLVLEAARSHRIPLVITLGGGY 276
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL A A+ G N+ GG HHA +G GFC + D+++ + +L + + A ++DL
Sbjct: 97 GTLAASRDAMESGLGGNLAGGTHHAFRAEGSGFCVFNDLAVAILMLRREGLAARAAVIDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|379729191|ref|YP_005321387.1| histone deacetylase [Saprospira grandis str. Lewin]
gi|378574802|gb|AFC23803.1| histone deacetylase [Saprospira grandis str. Lewin]
Length = 300
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 122/255 (47%), Gaps = 11/255 (4%)
Query: 158 ITQDNIIEPQEVSEEQLLIAHTEKYLKSLK-WSFNVAAISEVCPLVAVPNYFVQKCYLRP 216
+ ++N PQ ++EE +L H++ Y SLK + + A ++ + + + ++
Sbjct: 38 LEEENFFHPQPIAEEWILRTHSKDYWDSLKKQTISAKAARKI-------GFPMSEKLVQR 90
Query: 217 MRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST 276
+ GT++ A G S+NI GG HHA + G GFC D ++ L
Sbjct: 91 SKVIAQGTIDCCLAAQEYGVSLNIAGGTHHAYASHGEGFCLLNDFAIAANYLLDQGLAQQ 150
Query: 277 AMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEK 333
+IVDLD HQGNG K F NE R+F + KE I L +D YL+
Sbjct: 151 ILIVDLDVHQGNGSAKIFENEPRVFTFSMHAAANYPFRKERSDLDIALPDLMDDGPYLQV 210
Query: 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIV 393
+ L L S PDI++Y +G DVL +D LG L +S +RD+ VF ++ VP+
Sbjct: 211 LADYLPALLESLRPDIVLYLSGVDVLASDKLGRLGLSLNACAQRDQFVFSCCQKAGVPVA 270
Query: 394 MLTSGGYLKQTARII 408
+ GGY Q II
Sbjct: 271 VSMGGGYSPQLRYII 285
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++ A G S+NI GG HHA + G GFC D ++ L +IVDL
Sbjct: 97 GTIDCCLAAQEYGVSLNIAGGTHHAYASHGEGFCLLNDFAIAANYLLDQGLAQQILIVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|352096237|ref|ZP_08957117.1| Histone deacetylase [Synechococcus sp. WH 8016]
gi|351676931|gb|EHA60082.1| Histone deacetylase [Synechococcus sp. WH 8016]
Length = 282
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 122/260 (46%), Gaps = 11/260 (4%)
Query: 145 WKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVA 203
+K +F+ L + I P + L H +Y ++ + + A +
Sbjct: 4 FKMLFSALNALGLAESNQIHAPLPIPRRWLETVHQRRYHEAFARGRLDRQAQRRIGLPAT 63
Query: 204 VPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISL 263
P VQ+ +L VGGTL LAL G + ++ GG HHA G GFC + DI++
Sbjct: 64 TP--LVQRTWLA-----VGGTLLTARLALEHGVACHLAGGTHHAFSDYGSGFCIFNDIAV 116
Query: 264 LVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIE 320
++L + MIVDLD HQG+ F ++ R+F S K++ C +
Sbjct: 117 SARVLLDEGRLERLMIVDLDVHQGDATAVIFADDPRVFTFSAHAASNFPSRKQSSDCDLP 176
Query: 321 LAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDEL 380
EDQ YL + L L F P++++YNAG D +D LG L +S G+++RD L
Sbjct: 177 FEDGVEDQGYLAAVGEVLPSLLDRFKPELVLYNAGVDPHRDDRLGRLCLSDMGLLQRDHL 236
Query: 381 VFMKARERRVPIVMLTSGGY 400
VF R++P+ + GGY
Sbjct: 237 VFDACLRRQIPVASVIGGGY 256
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL LAL G + ++ GG HHA G GFC + DI++ ++L + MIVDL
Sbjct: 76 GTLLTARLALEHGVACHLAGGTHHAFSDYGSGFCIFNDIAVSARVLLDEGRLERLMIVDL 135
Query: 64 DAHQ 67
D HQ
Sbjct: 136 DVHQ 139
>gi|348525428|ref|XP_003450224.1| PREDICTED: uncharacterized protein SYNPCC7002_A1628-like
[Oreochromis niloticus]
Length = 345
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 128/264 (48%), Gaps = 10/264 (3%)
Query: 148 IFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNY 207
+ L+ + IT+ + P+ S++ L HTE YL + F ISE +
Sbjct: 68 VLQCLLRDQVITEKQVWVPEIASKDLLSCVHTEDYLDN----FINGKISE--QEQRRTGF 121
Query: 208 FVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVK- 266
+ +R RY GGT+ A +AL+RG + + GG HHA + G GFC D+++ K
Sbjct: 122 PWSEGIVRRCRYETGGTVLAAEVALQRGLACSTAGGTHHAFPSYGSGFCLLNDLAVAAKY 181
Query: 267 LLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAP 323
++ S + +IVDLD HQG+G F E +F K+ I +
Sbjct: 182 MMDNSPTKRKVLIVDLDVHQGDGTAFIFKEEPSVFTFSVHCGKNFPLRKQQSDLDISVED 241
Query: 324 YTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFM 383
ED+ YL +EA L L +F PD+++Y+AG D D LG L ++ QG+ +RD V
Sbjct: 242 GLEDKDYLSTVEAHLPWLLETFRPDLVLYDAGVDPHWEDELGRLRLTDQGLYQRDLFVLK 301
Query: 384 KARERRVPIVMLTSGGYLKQTARI 407
+R VPI + GGY + R+
Sbjct: 302 TVVKRGVPIAAVIGGGYSRDIDRL 325
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVK-LLFQSKSISTAMIVD 62
GT+ A +AL+RG + + GG HHA + G GFC D+++ K ++ S + +IVD
Sbjct: 137 GTVLAAEVALQRGLACSTAGGTHHAFPSYGSGFCLLNDLAVAAKYMMDNSPTKRKVLIVD 196
Query: 63 LDAHQ 67
LD HQ
Sbjct: 197 LDVHQ 201
>gi|86604935|ref|YP_473698.1| histone deacetylase family protein [Synechococcus sp. JA-3-3Ab]
gi|86553477|gb|ABC98435.1| histone deacetylase family protein [Synechococcus sp. JA-3-3Ab]
Length = 305
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 140/306 (45%), Gaps = 32/306 (10%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P+Y+ L H F K + + + + ++ +I PQ+V +
Sbjct: 4 PVVYHPDYSA---PLPPGHRFPMPK--------------FRLLHELLLREGVIRPQQVHQ 46
Query: 172 EQLLI------AHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTL 225
+L HT +Y+++ A + L P + C VGGT+
Sbjct: 47 PELPPLAWIESVHTPEYVRAYCEGSLEAKLQRRIGLPWSPELVQRTCRA------VGGTV 100
Query: 226 EAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAH 285
LALR G + N GG HHA G GFC + D+++ ++L Q + +IVDLD H
Sbjct: 101 LTAQLALRHGLACNTAGGTHHAFPAYGSGFCIFNDLAIAAQVLLQQGLVQKVLIVDLDVH 160
Query: 286 QGNGYEKDFMNETRIFIMET-CITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSL 342
QG+G F +E R+F C + K+A + L ED+ YL+ + L L
Sbjct: 161 QGDGTAWIFRSEPRVFTFSMHCAANFPATKQASDLDVPLPVGLEDEAYLQTLADYLPDLL 220
Query: 343 RSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402
PD+++Y+AG D D LG LA+S +G+ RRD V +R P+ + GGY
Sbjct: 221 AQVRPDLVLYDAGVDPHREDLLGKLALSDEGLFRRDMQVLDTCLKRGYPVACVIGGGYGN 280
Query: 403 QTARII 408
A+++
Sbjct: 281 DLAQLV 286
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LALR G + N GG HHA G GFC + D+++ ++L Q + +IVDL
Sbjct: 98 GTVLTAQLALRHGLACNTAGGTHHAFPAYGSGFCIFNDLAIAAQVLLQQGLVQKVLIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|408792422|ref|ZP_11204032.1| histone deacetylase family protein [Leptospira meyeri serovar
Hardjo str. Went 5]
gi|408463832|gb|EKJ87557.1| histone deacetylase family protein [Leptospira meyeri serovar
Hardjo str. Went 5]
Length = 278
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 129/271 (47%), Gaps = 15/271 (5%)
Query: 145 WKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVA 203
+ H++N + +I+ P++ E L + HT++YL L + + PL
Sbjct: 7 YSHLYNRVKRDPVYASWDILLPKKAEEADLELVHTKEYLDDLFSYEHTSRTMYSELPL-- 64
Query: 204 VPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISL 263
+ + Y VGGT+ A L+ ++ N+GGG+HH+ K GFC D+++
Sbjct: 65 ------NRSIVESFMYGVGGTIMASELSKTSQFAFNMGGGYHHSFPDKAEGFCYLNDVAI 118
Query: 264 LVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFI--METCITSKAKEAIRCRIEL 321
++ ++ A+I+DLD HQGNG F + ++F M KE + L
Sbjct: 119 AIRKQKETNPELNALIIDLDLHQGNGNSYIFQYDDKVFTFSMHQGNLYPKKEVSNLDVNL 178
Query: 322 APYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV 381
P T+D YL +E L + + F +II Y AG D +D LG L +S +G+ RD +V
Sbjct: 179 EPNTKDDEYLTTLETSLNQIRKEFDSNIIYYVAGADPYEDDSLGELKVSMKGLKERDLMV 238
Query: 382 FMKARERRVPIVMLTSGGYLKQTARIIADSI 412
A VP V+ +GGY AR D++
Sbjct: 239 RKFAESLNVPCVVTLAGGY----ARDFRDTV 265
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A L+ ++ N+GGG+HH+ K GFC D+++ ++ ++ A+I+DL
Sbjct: 78 GTIMASELSKTSQFAFNMGGGYHHSFPDKAEGFCYLNDVAIAIRKQKETNPELNALIIDL 137
Query: 64 DAHQ 67
D HQ
Sbjct: 138 DLHQ 141
>gi|431798624|ref|YP_007225528.1| deacetylase [Echinicola vietnamensis DSM 17526]
gi|430789389|gb|AGA79518.1| deacetylase, histone deacetylase/acetoin utilization protein
[Echinicola vietnamensis DSM 17526]
Length = 300
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 121/257 (47%), Gaps = 15/257 (5%)
Query: 158 ITQDNIIEPQEVSEEQLLIAHTEKYLKSL-KWSFNVAAISEVC-PLVAVPNYFVQKCYLR 215
I N+ EP +SEE ++ H YL+ L + S + I + PL A L
Sbjct: 38 IAAHNLFEPNALSEEWIVGPHKAGYLQKLTELSLTKSEIRKTGFPLSAA---------LV 88
Query: 216 PMRYHV-GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSI 274
H+ G+++ AL+ G ++NI GG HHA +G GFC DI++ L Q K
Sbjct: 89 EREIHIMDGSVQGCLFALKHGIAMNIAGGTHHAFSDRGEGFCLLNDIAISANYLVQKKLA 148
Query: 275 STAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYL 331
++VDLD HQGNG + F + +F + KE + L D+ Y+
Sbjct: 149 KQVLVVDLDVHQGNGTAEIFKDNPAVFTFSMHGAANYPLHKETSDLDVPLPDKVGDEFYI 208
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
K++ L L PD I+Y G DVL D LG L +S +G RD LV A + +P
Sbjct: 209 RKLKEHLPPLLDQVEPDFIIYQCGVDVLSTDKLGRLGVSIEGCKERDRLVLELAHQHELP 268
Query: 392 IVMLTSGGYLKQTARII 408
I+ GGY ++ + II
Sbjct: 269 IMCCMGGGYSEKISHII 285
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+++ AL+ G ++NI GG HHA +G GFC DI++ L Q K ++VDL
Sbjct: 97 GSVQGCLFALKHGIAMNIAGGTHHAFSDRGEGFCLLNDIAISANYLVQKKLAKQVLVVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|408490735|ref|YP_006867104.1| histone deactylase class IV [Psychroflexus torquis ATCC 700755]
gi|408468010|gb|AFU68354.1| histone deactylase class IV [Psychroflexus torquis ATCC 700755]
Length = 302
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 118/253 (46%), Gaps = 11/253 (4%)
Query: 161 DNIIEPQEVSEEQLLI--AHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
+N EPQ + + I HT YL+ L +N++ V + P + ++ R
Sbjct: 41 ENFFEPQINLDNETYIQSVHTSDYLEQL---YNISIEPRVARKIGFP---LSAELVKRER 94
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
GT+EA AL G S+NI GG HHA G FC D ++ L Q+K +
Sbjct: 95 IITNGTIEACNYALEYGVSMNIAGGTHHAYSDHGEAFCMLNDQAIAAHYLLQNKLAKQIL 154
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIE 335
+VDLD HQGNG + F + R+F S KE I + +D YLE ++
Sbjct: 155 VVDLDVHQGNGTAEIFQKDDRVFTFSMHGKSNYPFKKEISDLDIPMEDNCDDDQYLETLK 214
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
L + + PD I + +G D+L D LG L S G +RDE VF + +R +P+ +
Sbjct: 215 VTLPKLIDQVKPDFIFFLSGVDILSTDKLGKLGCSVAGCKKRDEFVFEQCLQREIPVEVS 274
Query: 396 TSGGYLKQTARII 408
GGY K II
Sbjct: 275 MGGGYSKDIKTII 287
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+EA AL G S+NI GG HHA G FC D ++ L Q+K ++VDL
Sbjct: 99 GTIEACNYALEYGVSMNIAGGTHHAYSDHGEAFCMLNDQAIAAHYLLQNKLAKQILVVDL 158
Query: 64 DAHQ 67
D HQ
Sbjct: 159 DVHQ 162
>gi|392538515|ref|ZP_10285652.1| histone deacetylase [Pseudoalteromonas marina mano4]
Length = 302
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 137/301 (45%), Gaps = 25/301 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ F + H F K+ +++ + V+ + +N+ +P S
Sbjct: 8 PLVYHPNYS---FSFDPKHRFAMSKFANLYAH---------VKKLGLVGNNLTQPVLGSP 55
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGF 229
E L + H + Y+ L +N + + +P + + + P GTL+
Sbjct: 56 EPLELVHCDNYIHDL---WNNRLDDKAMRRIGLPWSAQLMARTFTAPQ-----GTLQTAR 107
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL+ G + ++ GG HHA G G+C D++ + L S ++ +I DLD HQG+G
Sbjct: 108 LALKHGIACHLAGGTHHAHFDFGSGYCMVNDLAFTTQTLINSGEVTNVLIFDLDVHQGDG 167
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
++ + K A I LA + +D YL ++ L L+
Sbjct: 168 TAAMLAHQPYAYTCSIHCEKNFPFRKSASDLDIGLANHMQDAEYLAIVDDTLSYLLKELN 227
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
P +++Y+AG D+ ND LG L IS GI +RD LV + E +P+ + GGY K R
Sbjct: 228 PSLVLYDAGVDIWQNDGLGKLDISWDGIAKRDHLVLKRCLEHNIPVATVIGGGYDKDHLR 287
Query: 407 I 407
+
Sbjct: 288 L 288
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL+ LAL+ G + ++ GG HHA G G+C D++ + L S ++ +I DL
Sbjct: 101 GTLQTARLALKHGIACHLAGGTHHAHFDFGSGYCMVNDLAFTTQTLINSGEVTNVLIFDL 160
Query: 64 DAHQFSDYYFPSAH-------SIKRKRKVEFLKERKALEDEITSEPQES 105
D HQ AH SI ++ F K L+ + + Q++
Sbjct: 161 DVHQGDGTAAMLAHQPYAYTCSIHCEKNFPFRKSASDLDIGLANHMQDA 209
>gi|116075072|ref|ZP_01472332.1| putative histone deacetylase/AcuC/AphA family protein
[Synechococcus sp. RS9916]
gi|116067269|gb|EAU73023.1| putative histone deacetylase/AcuC/AphA family protein
[Synechococcus sp. RS9916]
Length = 303
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 135/295 (45%), Gaps = 26/295 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ L H F K+ H+ + L L++ + + I P +S
Sbjct: 3 PLVYHPLYSA---PLPSSHRFPMAKF-HLLHQL-------LLDRGTVQEQQIHRPVSISR 51
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAG 228
L H +Y +F + ++ E + +P VQ+ +L VGGTL
Sbjct: 52 RDLEQVHERQY----HQAFCLGTLTREQQRRIGLPATRPLVQRTWLA-----VGGTLLTA 102
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
LAL G + ++ GG HHA G GFC + D ++ +L + ++VDLD HQG+
Sbjct: 103 RLALEAGLACHLAGGTHHAHPGFGSGFCIFNDCAVAASVLLAQGMVRQVLVVDLDVHQGD 162
Query: 289 GYEKDFMNETRIFIMETCITSKAKEAIRCR---IELAPYTEDQHYLEKIEAGLERSLRSF 345
G F ++ R+F + S C I L +T D Y+E I L L
Sbjct: 163 GTAACFASDPRVFTLSVHAASNFPLRKVCSDLDIPLDDHTTDHAYMEAIGDQLPELLERL 222
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
PD+++YNAG D +D LG L ++ G+++RD LV R +PI + GGY
Sbjct: 223 QPDLVLYNAGVDPHQDDRLGRLKLTDLGLLQRDRLVIDACLRRNIPIATVIGGGY 277
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL LAL G + ++ GG HHA G GFC + D ++ +L + ++VDL
Sbjct: 97 GTLLTARLALEAGLACHLAGGTHHAHPGFGSGFCIFNDCAVAASVLLAQGMVRQVLVVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|119584570|gb|EAW64166.1| histone deacetylase 11, isoform CRA_j [Homo sapiens]
Length = 264
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 75/115 (65%), Gaps = 8/115 (6%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
WPIVY P YN+ F LEKLHPFD+ KW + N+L E K ++ ++E +E S
Sbjct: 16 WPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLLSDSMLVEAREAS 67
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTL 225
EE LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R GGT+
Sbjct: 68 EEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTI 122
>gi|332532183|ref|ZP_08408064.1| histone deacetylase family protein [Pseudoalteromonas haloplanktis
ANT/505]
gi|332038281|gb|EGI74726.1| histone deacetylase family protein [Pseudoalteromonas haloplanktis
ANT/505]
Length = 297
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 125/251 (49%), Gaps = 17/251 (6%)
Query: 165 EPQEVSEEQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGG 223
EP++ ++ QL + H + Y+ + L + + AI ++ N V++ L VG
Sbjct: 44 EPKKATKSQLSLCHNQTYINNFLNGTLSNKAIKKMG--FPYSNELVERTLLS-----VGA 96
Query: 224 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 283
++++ AL+ G+S N+ GG+HHA G GFC + D+++ L ++ T +I D D
Sbjct: 97 SIQSSEHALKHGFSANLSGGYHHAYSDYGSGFCIFNDLAIAAAHLINTEQADTVLIFDCD 156
Query: 284 AHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCRIE------LAPYTEDQHYLEKIEAG 337
HQG+G + N +I TC + R + E L T D YL +E
Sbjct: 157 VHQGDGTAQITQNHDQII---TCSIHCEQNFPRNKQESTYDFALPAKTTDAEYLATLEQA 213
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L+ +R PDII+YNAG D+ D LGL +S G+ +RD ++ ++P++
Sbjct: 214 LDFCVRIHNPDIILYNAGADIYTKDELGLFDVSIDGVYKRDFFTLNFCKQHQIPLMCGLG 273
Query: 398 GGYLKQTARII 408
GGY + + +I
Sbjct: 274 GGYQRNLSSLI 284
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL+ G+S N+ GG+HHA G GFC + D+++ L ++ T +I D D HQ
Sbjct: 104 ALKHGFSANLSGGYHHAYSDYGSGFCIFNDLAIAAAHLINTEQADTVLIFDCDVHQ 159
>gi|359451303|ref|ZP_09240710.1| hypothetical protein P20480_3448 [Pseudoalteromonas sp. BSi20480]
gi|358042944|dbj|GAA76959.1| hypothetical protein P20480_3448 [Pseudoalteromonas sp. BSi20480]
Length = 302
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 137/301 (45%), Gaps = 25/301 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ F + H F K+ +++ + V+ + +N+ +P S
Sbjct: 8 PLVYHPNYS---FSFDPKHRFAMSKFANLYAH---------VKKLGLIGNNLTQPVLGSP 55
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGF 229
E L + H + Y+ L +N + + +P + + + P GTL+
Sbjct: 56 EPLELVHCDNYIHDL---WNNRLDDKAMRRIGLPWSAQLMARTFTAPQ-----GTLQTAR 107
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL+ G + ++ GG HHA G G+C D++ + L S ++ +I DLD HQG+G
Sbjct: 108 LALKHGIACHLAGGTHHAHFDFGSGYCMVNDLAFTTQTLINSGEVTNVLIFDLDVHQGDG 167
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
++ + K A I LA + +D YL ++ L L+
Sbjct: 168 TAAMLAHQPYAYTCSIHCEKNFPFRKSASDLDIGLANHMQDAEYLAIVDDTLSYLLKELN 227
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
P +++Y+AG D+ ND LG L IS GI +RD LV + E +P+ + GGY K R
Sbjct: 228 PSLVLYDAGVDIWQNDGLGKLDISWDGIAKRDHLVLKRCLEHNIPVATVIGGGYDKDHLR 287
Query: 407 I 407
+
Sbjct: 288 L 288
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL+ LAL+ G + ++ GG HHA G G+C D++ + L S ++ +I DL
Sbjct: 101 GTLQTARLALKHGIACHLAGGTHHAHFDFGSGYCMVNDLAFTTQTLINSGEVTNVLIFDL 160
Query: 64 DAHQFSDYYFPSAH-------SIKRKRKVEFLKERKALEDEITSEPQES 105
D HQ AH SI ++ F K L+ + + Q++
Sbjct: 161 DVHQGDGTAAMLAHQPYAYTCSIHCEKNFPFRKSASDLDIGLANHMQDA 209
>gi|300773816|ref|ZP_07083685.1| histone deacetylase [Sphingobacterium spiritivorum ATCC 33861]
gi|300759987|gb|EFK56814.1| histone deacetylase [Sphingobacterium spiritivorum ATCC 33861]
Length = 334
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 116/260 (44%), Gaps = 9/260 (3%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQK 211
L+ +++D+ EP+ VSEE +AH E Y++ L F + + + + P +
Sbjct: 65 LIHEGLVSKDSFFEPELVSEEIACLAHDESYVRDL---FELTLDARMIRRIGFP---LTD 118
Query: 212 CYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS 271
+R R V GT+ A++ G + N+ GG HHA G GFC D ++ L
Sbjct: 119 SLIRRERLIVDGTIRTALFAIQYGIAFNVAGGTHHAGYAYGEGFCLLNDQAIAAAYLLAE 178
Query: 272 KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQ 328
+ +I+DLD HQGNG F +F KE I L D+
Sbjct: 179 QKAHKILIIDLDVHQGNGTANIFKGSKAVFTFSMHGAKNFPFIKEQSHLDISLEDGITDK 238
Query: 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER 388
+YL ++ L PD + Y AG DVL D LG L +SP+ RD +V R+
Sbjct: 239 NYLSQLTTVLPDLFEKVAPDFVFYQAGVDVLATDKLGKLKLSPEACKERDYIVLSLCRQL 298
Query: 389 RVPIVMLTSGGYLKQTARII 408
+P+ + GGY + I+
Sbjct: 299 DIPVQVSMGGGYSEHIRDIV 318
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 11/123 (8%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A++ G + N+ GG HHA G GFC D ++ L + +I+DL
Sbjct: 130 GTIRTALFAIQYGIAFNVAGGTHHAGYAYGEGFCLLNDQAIAAAYLLAEQKAHKILIIDL 189
Query: 64 DAHQ-------FSDYYFPSAHSIKRKRKVEFLKERK----ALEDEITSEPQESVVTRPWP 112
D HQ F S+ + F+KE+ +LED IT + S +T P
Sbjct: 190 DVHQGNGTANIFKGSKAVFTFSMHGAKNFPFIKEQSHLDISLEDGITDKNYLSQLTTVLP 249
Query: 113 IVY 115
++
Sbjct: 250 DLF 252
>gi|170746500|ref|YP_001752760.1| histone deacetylase superfamily protein [Methylobacterium
radiotolerans JCM 2831]
gi|170653022|gb|ACB22077.1| histone deacetylase superfamily [Methylobacterium radiotolerans JCM
2831]
Length = 306
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 135/292 (46%), Gaps = 21/292 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PI + P Y L H F +K+ + L AK + + P+ S
Sbjct: 4 PIAFHPAYEA---PLPSGHRFPMRKYGLLAETLV---------AKGLAPLGFVTPEPASA 51
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ LL AH Y+ ++ + +V E+ + +P V +R R VGGTL AG LA
Sbjct: 52 DILLRAHDPAYVDAV-LACDVG--REIERAIGLP---VDAALVRRSRASVGGTLLAGRLA 105
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G + + GG HHA +G GFC D+++ + L + ++VDLD HQG+G
Sbjct: 106 LAEGLAGSAAGGSHHARRQQGAGFCVLNDVAVAARTLQAEGLVRRVLVVDLDVHQGDGTA 165
Query: 292 KDFMNETRIFIMET-CITSKAKEAIRCRIE--LAPYTEDQHYLEKIEAGLERSLRSFCPD 348
+F + C + + I ++ L +D YL+ + A L L +F PD
Sbjct: 166 DCLALSPDLFTLSIHCENNYPAQKIAGDLDIGLPDRLDDAGYLDVLRARLPPLLDAFAPD 225
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
++ YNAG D +D LG L ++ G++ RD V +AR R + + + GGY
Sbjct: 226 LVFYNAGVDPHRDDRLGRLCLTDDGLLARDRFVVAQARARGIALAAVIGGGY 277
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL AG LAL G + + GG HHA +G GFC D+++ + L + ++VDL
Sbjct: 97 GTLLAGRLALAEGLAGSAAGGSHHARRQQGAGFCVLNDVAVAARTLQAEGLVRRVLVVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|443321291|ref|ZP_21050349.1| deacetylase, histone deacetylase/acetoin utilization protein
[Gloeocapsa sp. PCC 73106]
gi|442788980|gb|ELR98655.1| deacetylase, histone deacetylase/acetoin utilization protein
[Gloeocapsa sp. PCC 73106]
Length = 303
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 143/302 (47%), Gaps = 24/302 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDN-IIEPQEVS 170
P+VY P+Y V L + H F K+K ++ L A+ IT N P+
Sbjct: 4 PLVYHPDYVV---PLPQGHRFPMSKFKQLYELLL---------AQEITDRNSTYTPEMPK 51
Query: 171 EEQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
E L + HT Y+++ + + ++ + +P + ++ V GT+
Sbjct: 52 REWLQLVHTNDYVEAYCNGTLDAKSVRRI----GLP---CSEMLIKRTCIAVAGTVLTAQ 104
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL+ G N GG HHA + G GFC + D+++ ++L Q K + +IVDLD HQG+G
Sbjct: 105 LALKLGICCNCAGGTHHAFPSFGSGFCIFNDLAIASQVLLQQKLVKKILIVDLDVHQGDG 164
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
F + +F + K+ I L +D+ YL+ + L L
Sbjct: 165 TAFIFQDNPAVFTFSMHCEANFPSHKQQSDLDIPLPIGLDDEGYLQILAQSLPDLLSEVK 224
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
PD+++Y+AG D+ +ND LG LA++ +GI RR+ LV ++ P+ + GGY +
Sbjct: 225 PDLVLYDAGVDIHVNDALGKLALTDRGIYRREMLVLSTCLDKGYPVAGVIGGGYCQDIRA 284
Query: 407 II 408
++
Sbjct: 285 LV 286
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL+ G N GG HHA + G GFC + D+++ ++L Q K + +IVDL
Sbjct: 98 GTVLTAQLALKLGICCNCAGGTHHAFPSFGSGFCIFNDLAIASQVLLQQKLVKKILIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|307941483|ref|ZP_07656838.1| histone deacetylase superfamily protein [Roseibium sp. TrichSKD4]
gi|307775091|gb|EFO34297.1| histone deacetylase superfamily protein [Roseibium sp. TrichSKD4]
Length = 354
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 140/296 (47%), Gaps = 28/296 (9%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAK-FITQDNIIEPQEVS 170
PIV+ P Y L H F K++ + L+EA+ + + +P+
Sbjct: 42 PIVHHPAYCA---SLPANHRFPMDKFRAV---------AALIEAEGLLGEGRFYKPRAAP 89
Query: 171 EEQLLIAHTEKYLKSLKWSFNVA-AISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
+ + +AH Y+ + +S NV A++ P+ + RY GGT+ G+
Sbjct: 90 FDWVALAHDPVYVDQV-FSTNVPKAVAREIGFDIRPDIAARA------RYATGGTVLTGY 142
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL G + N GG HHA +G GFC + D+++ ++++ IS A+++DLD HQG+G
Sbjct: 143 LALEHGIACNTAGGSHHARWKQGAGFCVFNDVAVAIRVMQADGVISRALVIDLDVHQGDG 202
Query: 290 YEKDFMNETRIFIMETCITSKAKEAIR-----CRIELAPYTEDQHYLEKIEAGLERSLRS 344
F + + + ++ +R IEL D YL + A L+
Sbjct: 203 TADIFRHCDSVVTFS--MHARKNYPVRKVPSNHDIELPDGASDNSYLAHLAARTTEVLKR 260
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
PDI+ YNAG D D LG LA+S G+++RDELV R+ +P+ + GGY
Sbjct: 261 ARPDIVFYNAGVDPYKEDRLGRLALSRAGLLQRDELVIQTVRQAGIPLAGVLGGGY 316
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ G+LAL G + N GG HHA +G GFC + D+++ ++++ IS A+++DL
Sbjct: 136 GTVLTGYLALEHGIACNTAGGSHHARWKQGAGFCVFNDVAVAIRVMQADGVISRALVIDL 195
Query: 64 DAHQ 67
D HQ
Sbjct: 196 DVHQ 199
>gi|119468440|ref|ZP_01611531.1| putative histone deacetylase family protein [Alteromonadales
bacterium TW-7]
gi|119447948|gb|EAW29213.1| putative histone deacetylase family protein [Alteromonadales
bacterium TW-7]
Length = 302
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 137/301 (45%), Gaps = 25/301 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ F + H F K+ +++ + V+ + +N+ +P S
Sbjct: 8 PLVYHPNYS---FSFDPKHRFAMSKFANLYTH---------VKKLGLIGNNLTQPVLGSP 55
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGF 229
E L + H + Y+ L +N + + +P + + + P GTL+
Sbjct: 56 EPLELVHCDNYIHDL---WNNRLDDKAMRRIGLPWSAQLMARTFTAPQ-----GTLQTAR 107
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL+ G + ++ GG HHA G G+C D++ + L S ++ +I DLD HQG+G
Sbjct: 108 LALKHGIACHLAGGTHHAHFDFGSGYCMVNDLAFATQTLINSGEVTNVLIFDLDVHQGDG 167
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
++ + K A I LA + +D YL ++ L L+
Sbjct: 168 TAAMLAHQPYAYTCSIHCEKNFPFRKSASDLDIGLANHMQDVEYLAIVDDTLSYLLKELN 227
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
P +++Y+AG D+ ND LG L IS GI +RD LV + E +P+ + GGY K R
Sbjct: 228 PSLVLYDAGVDIWQNDGLGKLDISWDGIAKRDHLVLKRCLEHNIPVATVIGGGYDKDHLR 287
Query: 407 I 407
+
Sbjct: 288 L 288
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL+ LAL+ G + ++ GG HHA G G+C D++ + L S ++ +I DL
Sbjct: 101 GTLQTARLALKHGIACHLAGGTHHAHFDFGSGYCMVNDLAFATQTLINSGEVTNVLIFDL 160
Query: 64 DAHQFSDYYFPSAH-------SIKRKRKVEFLKERKALEDEITSEPQE 104
D HQ AH SI ++ F K L+ + + Q+
Sbjct: 161 DVHQGDGTAAMLAHQPYAYTCSIHCEKNFPFRKSASDLDIGLANHMQD 208
>gi|218528759|ref|YP_002419575.1| histone deacetylase superfamily protein [Methylobacterium
extorquens CM4]
gi|218521062|gb|ACK81647.1| histone deacetylase superfamily [Methylobacterium extorquens CM4]
Length = 297
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 136/292 (46%), Gaps = 21/292 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIV+ P Y +L + H F +K+ + L A+ + D + P+
Sbjct: 3 PIVFHPAYEA---ELPEGHRFPMRKYGRLAEIL---------RARGLVPDGFVTPEPADA 50
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
L AH Y+ ++ + AI + +P V + GGTL A LA
Sbjct: 51 ALLSGAHDPAYVAAVLAAQVPRAIERA---IGLP---VTEAVAARACASAGGTLRAARLA 104
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G + + GG HHA G GFC + D+++ L + +I+ A+IVDLD HQG+G
Sbjct: 105 LSHGLAGSTAGGSHHARRAGGAGFCVFNDVAVAALALRREGAITRALIVDLDVHQGDGTA 164
Query: 292 KDFMNETRIFIMET-CITSKAKEAIRCRIELA-PYT-EDQHYLEKIEAGLERSLRSFCPD 348
E +F + C + + + +++ P +D Y +EA L +++F PD
Sbjct: 165 DCLAREPDLFTLSIHCERNYPHDKVPGDLDIGLPVGLDDAEYCAVLEARLPALIQNFAPD 224
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
+I YNAG D +D LG L ++ G++ RD V A+ +R+P+ + GGY
Sbjct: 225 LIFYNAGVDPHRDDRLGRLCLTDAGLLARDRYVVGLAQSQRIPLCAVIGGGY 276
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL A LAL G + + GG HHA G GFC + D+++ L + +I+ A+IVDL
Sbjct: 96 GTLRAARLALSHGLAGSTAGGSHHARRAGGAGFCVFNDVAVAALALRREGAITRALIVDL 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|224825370|ref|ZP_03698475.1| histone deacetylase superfamily [Pseudogulbenkiania ferrooxidans
2002]
gi|224602291|gb|EEG08469.1| histone deacetylase superfamily [Pseudogulbenkiania ferrooxidans
2002]
Length = 312
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 122/253 (48%), Gaps = 12/253 (4%)
Query: 162 NIIEPQEV-SEEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRY 219
+++EP + +L H Y+ +L + S A E+ L P + C+
Sbjct: 37 HLLEPASAATPAELCRVHDAAYVHALLEGSLPERAQREIG-LPWSPQLVARACH------ 89
Query: 220 HVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMI 279
VG T+ A +AL +G +N+ GG HHA KG GFC + D+++ +LL I A++
Sbjct: 90 SVGATIAAARVALLQGCGVNLAGGTHHAQADKGSGFCVFNDVAVAARLLLDEGHIRRALV 149
Query: 280 VDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEA 336
+DLD HQGNG F +E R+F + K A +EL T D+ YL + A
Sbjct: 150 IDLDVHQGNGTAALFRDEARVFTFSMHGQNNFPFRKVAGDRDVELPDGTSDETYLALLSA 209
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
LE R PD++ Y AG D D LG L ++ G++RRD +V + V + +
Sbjct: 210 NLEELFRLARPDLVFYLAGADPYEGDRLGKLKLTADGLLRRDRMVLDACQRHEVGVAIAM 269
Query: 397 SGGYLKQTARIIA 409
+GGY A +A
Sbjct: 270 AGGYAVPIADTVA 282
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
T+ A +AL +G +N+ GG HHA KG GFC + D+++ +LL I A+++DLD
Sbjct: 94 TIAAARVALLQGCGVNLAGGTHHAQADKGSGFCVFNDVAVAARLLLDEGHIRRALVIDLD 153
Query: 65 AHQ 67
HQ
Sbjct: 154 VHQ 156
>gi|424842887|ref|ZP_18267512.1| deacetylase, histone deacetylase/acetoin utilization protein
[Saprospira grandis DSM 2844]
gi|395321085|gb|EJF54006.1| deacetylase, histone deacetylase/acetoin utilization protein
[Saprospira grandis DSM 2844]
Length = 300
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 123/255 (48%), Gaps = 11/255 (4%)
Query: 158 ITQDNIIEPQEVSEEQLLIAHTEKYLKSLK-WSFNVAAISEVCPLVAVPNYFVQKCYLRP 216
+ ++N +PQ ++EE +L H++ Y +LK + + A ++ + + + ++
Sbjct: 38 LEEENFFQPQPIAEEWILRTHSKDYWDALKEQTISAKAARKI-------GFPMSEKLVQR 90
Query: 217 MRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST 276
+ GT++ A G S+NI GG HHA + G GFC D ++ L
Sbjct: 91 SKVIAQGTIDCCLAAQEYGVSLNIAGGTHHAYASHGEGFCLLNDFAIAANYLLDQGLAQQ 150
Query: 277 AMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEK 333
+IVDLD HQGNG K F NE R+F + KE I L +D YL+
Sbjct: 151 ILIVDLDVHQGNGSAKIFENEPRVFTFSMHAAANYPFRKERSDLDIALPDLMDDGPYLQV 210
Query: 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIV 393
+ L L S PD+++Y +G DVL +D LG L +S +RD+ VF ++ VP+
Sbjct: 211 LADCLPALLESLRPDMVLYLSGVDVLASDKLGRLGLSLNACAQRDQFVFSCCQKAGVPVA 270
Query: 394 MLTSGGYLKQTARII 408
+ GGY Q II
Sbjct: 271 VSMGGGYSPQLRYII 285
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++ A G S+NI GG HHA + G GFC D ++ L +IVDL
Sbjct: 97 GTIDCCLAAQEYGVSLNIAGGTHHAYASHGEGFCLLNDFAIAANYLLDQGLAQQILIVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|398342481|ref|ZP_10527184.1| deacetylase [Leptospira inadai serovar Lyme str. 10]
Length = 330
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 146/312 (46%), Gaps = 26/312 (8%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
++Y PEYN+ H F ++K+ I+N + E ++ ++P V E
Sbjct: 38 LIYHPEYNMDL----GAHVFPARKYGMIYNLVK--------EDPKLSGLVALQPAPVGVE 85
Query: 173 QLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+L + HT ++L + + + PL K +R VGGT+ A
Sbjct: 86 ELSLVHTPEFLSDFMNLRYTDRTMYSELPL--------NKEIVRSFCLGVGGTILATETT 137
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
+ +IGGGFHH+ + GFC D ++ KL Q + +DLD HQGNG
Sbjct: 138 ENYKYVYHIGGGFHHSMPDRAEGFCYLNDAAVATKLYLQKYPDKKVLYIDLDLHQGNGNA 197
Query: 292 KDFMNETRI--FIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDI 349
K F ++ + F M KE I L T D+ YL+ + GL++ +F PD+
Sbjct: 198 KVFKDDPAVWTFSMHQEQLYPKKERSSLDIPLENGTGDKTYLKALVEGLDKVRANFMPDL 257
Query: 350 IVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ---TAR 406
I Y AG D +D LG L ++ +G+ +RD++V A VP+V+L +GGY + T R
Sbjct: 258 IYYFAGADPFEDDSLGDLKLTFEGLKKRDKIVKEFADSLDVPVVVLPAGGYARNFHDTVR 317
Query: 407 IIADSILNLADL 418
I ++I A L
Sbjct: 318 IHFNTIRVFASL 329
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A + +IGGGFHH+ + GFC D ++ KL Q + +DL
Sbjct: 129 GTILATETTENYKYVYHIGGGFHHSMPDRAEGFCYLNDAAVATKLYLQKYPDKKVLYIDL 188
Query: 64 DAHQ 67
D HQ
Sbjct: 189 DLHQ 192
>gi|317969127|ref|ZP_07970517.1| histone deacetylase family protein [Synechococcus sp. CB0205]
Length = 304
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 132/293 (45%), Gaps = 22/293 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIE-PQEVS 170
P+VY P Y+ L H F K+K + L+E + + ++ I P V
Sbjct: 4 PLVYHPAYSA---PLPSSHRFPMAKFK---------LLRALLEEQGLAREEQIHTPLPVP 51
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
L + H+ +Y ++ + A L A VQ+ +L VGG+L L
Sbjct: 52 RRSLELIHSRRYHQAFARGELLPAEQRRIGLPAT-TPLVQRTWLA-----VGGSLLTARL 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL+ G S ++ GG HHA G GFC + D ++ ++L + MI+DLD HQG+
Sbjct: 106 ALQHGVSCHLAGGTHHAYPDHGSGFCIFNDFAVAAQVLLAEGQVQRLMIIDLDVHQGDAT 165
Query: 291 EKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
F +E R+F + S K+ + L D YLE I + L P
Sbjct: 166 ASIFRDEPRVFTLSVHCGSNFPLRKQQSDVDLALDDGLGDDAYLESIGDLIPTLLDQEQP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
D+++YNAG D D LG L ++ QG++ RD LV R +P+ + GGY
Sbjct: 226 DLVLYNAGVDPHREDRLGRLNLTDQGLLNRDRLVLDSCLRRNIPVATVIGGGY 278
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L LAL+ G S ++ GG HHA G GFC + D ++ ++L + MI+DL
Sbjct: 98 GSLLTARLALQHGVSCHLAGGTHHAYPDHGSGFCIFNDFAVAAQVLLAEGQVQRLMIIDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|116327589|ref|YP_797309.1| deacetylase [Leptospira borgpetersenii serovar Hardjo-bovis str.
L550]
gi|116331800|ref|YP_801518.1| deacetylase [Leptospira borgpetersenii serovar Hardjo-bovis str.
JB197]
gi|116120333|gb|ABJ78376.1| Deacetylase [Leptospira borgpetersenii serovar Hardjo-bovis str.
L550]
gi|116125489|gb|ABJ76760.1| Deacetylase [Leptospira borgpetersenii serovar Hardjo-bovis str.
JB197]
Length = 301
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 141/294 (47%), Gaps = 25/294 (8%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
+VY P+YN+ H F ++K++ I++ + + + + + P+ ++
Sbjct: 10 LVYHPDYNIDLGP----HIFPARKYQMIYDLVK--------QDRKLADLYVYRPEPAKDK 57
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
L + HT+++LK F I+E +P + K ++ VGGT+ A L
Sbjct: 58 DLTLVHTKEFLKD----FFSLKITERTQYSELP---LTKQIVQSFVLAVGGTILATELTQ 110
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
+ + +IGGGFHH+ + GFC D ++ VKL ++ + +DLD HQGNG
Sbjct: 111 KYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIAVKLYQRTYPGRKILFIDLDLHQGNGNSV 170
Query: 293 DFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
F ++ +F E K K + +E TED YLE + L + F PD
Sbjct: 171 VFQEDSDVFTFSMHQENLYPKKEKSGLDIPLEEG--TEDGKYLELLTESLHKIKSDFKPD 228
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402
+I Y AG D D LG L ++ QG+ +RD++V R VP V+L +GGY K
Sbjct: 229 LIFYIAGADPFEGDSLGDLKLTLQGLRKRDKIVRDFVRALDVPAVILPAGGYAK 282
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A L + + +IGGGFHH+ + GFC D ++ VKL ++ + +DL
Sbjct: 101 GTILATELTQKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIAVKLYQRTYPGRKILFIDL 160
Query: 64 DAHQ 67
D HQ
Sbjct: 161 DLHQ 164
>gi|392546013|ref|ZP_10293150.1| histone deacetylase superfamily protein [Pseudoalteromonas rubra
ATCC 29570]
Length = 308
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 141/303 (46%), Gaps = 28/303 (9%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
+ Y P Y+ L H F K++ ++ L + A ++TQ N++ S
Sbjct: 2 LFYHPSYSA--LPLPPKHRFPIDKYRLLYQQLLQTPC-----ASWLTQPNLV----ASPA 50
Query: 173 QLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ + H +Y+ + L + A+ + + + + VG LEA LA
Sbjct: 51 HITLCHEPEYVTAFLNGTLPDGAVKRM-------GFPWSEQLVERTLCSVGAALEAVQLA 103
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G++ N+ GG+HHA + GFC + D+++ + L Q+ + T +++D D HQG+G
Sbjct: 104 LSDGFAANLSGGYHHAFSDRAAGFCIFNDLAIAARYLIQTGQVDTVLLLDCDVHQGDGSA 163
Query: 292 KDFMNETRIFIMETCIT------SKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
+ ++T+I TC K K L D YL + L R
Sbjct: 164 EILADDTQII---TCSLHCEQNFPKLKRQSDYDFALPVDCSDATYLATLHDALSLCTRLH 220
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PDII+YNAG D+ D LG LA+S G++ RD+ V AR++ +P++ GGY + +
Sbjct: 221 QPDIILYNAGADIFRLDELGHLAVSLDGVLARDKQVLGHARQQGIPLMAALGGGYQRNVS 280
Query: 406 RII 408
R++
Sbjct: 281 RLV 283
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
LEA LAL G++ N+ GG+HHA + GFC + D+++ + L Q+ + T +++D
Sbjct: 95 AALEAVQLALSDGFAANLSGGYHHAFSDRAAGFCIFNDLAIAARYLIQTGQVDTVLLLDC 154
Query: 64 DAHQ 67
D HQ
Sbjct: 155 DVHQ 158
>gi|86608428|ref|YP_477190.1| histone deacetylase family protein [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556970|gb|ABD01927.1| histone deacetylase family protein [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 305
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 137/306 (44%), Gaps = 32/306 (10%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY P+Y+ L H F K + + + + ++ +I PQ+V
Sbjct: 4 PIVYHPDYSA---PLPPGHRFPMPK--------------FRLLQELLLREGVIRPQQVHH 46
Query: 172 EQLLI------AHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTL 225
+L HT +Y+++ A + L P + C VGGT+
Sbjct: 47 PELPPLAWIESVHTPEYVRAYCEGSLEAKLQRRIGLPWSPELVQRTCRA------VGGTV 100
Query: 226 EAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAH 285
LALR G + N GG HHA G GFC + D+++ ++L Q + +IVDLD H
Sbjct: 101 LTAQLALRHGLACNTAGGTHHAFPAYGSGFCIFNDLAIAAQVLLQQGLVQRLLIVDLDVH 160
Query: 286 QGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSL 342
QG+G F +E R+F + K+ + L ED+ YL+ + L L
Sbjct: 161 QGDGTAWIFRSEPRVFTFSMHCEANFPATKQQSDLDVPLPVGMEDEAYLQTLADHLPDLL 220
Query: 343 RSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402
PD+++Y+AG D D LG LA+S QG+ RRD V ++ P+ + GGY K
Sbjct: 221 AQVRPDLVLYDAGVDPHEEDLLGKLALSDQGLFRRDMQVLNTCLKQGYPVACVIGGGYGK 280
Query: 403 QTARII 408
R++
Sbjct: 281 DLNRLV 286
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LALR G + N GG HHA G GFC + D+++ ++L Q + +IVDL
Sbjct: 98 GTVLTAQLALRHGLACNTAGGTHHAFPAYGSGFCIFNDLAIAAQVLLQQGLVQRLLIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|221057225|ref|XP_002259750.1| histone deacetylase [Plasmodium knowlesi strain H]
gi|193809822|emb|CAQ40526.1| histone deacetylase, putative [Plasmodium knowlesi strain H]
Length = 471
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 151/310 (48%), Gaps = 27/310 (8%)
Query: 99 TSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI 158
T++ + S ++R P V+ P Y+ K EK H F KK++ IF+ L +E
Sbjct: 165 TNQKKYSPLSRNPPYVFHPIYSSVPMK-EKYHRFKMKKYEKIFSRL--------IEGGIY 215
Query: 159 TQDNIIEPQEVSEE--QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRP 216
D I +SE L H EK+++ + E L P YFV + YL
Sbjct: 216 NSDYSIPSCNISEMIVPLFNIHDEKFIEEIFSIVTHNKQVEKYELTLHP-YFVCR-YL-- 271
Query: 217 MRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST 276
+ GT+ + LA++ ++IGGG HH+ + +G GFC + D+++ V L I
Sbjct: 272 --IEINGTILSSLLAMKYFMCMHIGGGNHHSKKNRGDGFCIFNDVAIAVHFLLSHGLIDK 329
Query: 277 AMIVDLDAHQGNGYEKDFMNETRIFIM-----ETCITSKAKEAIRCRIELAPYTEDQHYL 331
A+I+D+D HQG+G + F N T + + + KA I IE +T D YL
Sbjct: 330 AIILDVDVHQGDGTAEIFRNCTNVKTISLHCRDNFPPVKANSTI--DIEFDSFTTDGDYL 387
Query: 332 EKIEAGLER-SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRV 390
E+ L+ + C II Y +G D+ +D LG L++S GI RD + + A +R +
Sbjct: 388 EEYRKVLDDIAAEQNC--IIFYLSGVDISADDDLGFLSVSDAGIYERDLMTYQMAHQRGI 445
Query: 391 PIVMLTSGGY 400
PIV + SGGY
Sbjct: 446 PIVTVLSGGY 455
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ + LA++ ++IGGG HH+ + +G GFC + D+++ V L I A+I+D+
Sbjct: 276 GTILSSLLAMKYFMCMHIGGGNHHSKKNRGDGFCIFNDVAIAVHFLLSHGLIDKAIILDV 335
Query: 64 DAHQ 67
D HQ
Sbjct: 336 DVHQ 339
>gi|126660711|ref|ZP_01731810.1| histone deacetylase/AcuC/AphA family protein [Cyanothece sp.
CCY0110]
gi|126618009|gb|EAZ88779.1| histone deacetylase/AcuC/AphA family protein [Cyanothece sp.
CCY0110]
Length = 305
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 140/301 (46%), Gaps = 22/301 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY +Y V L H F +K+ ++ L + K + +NI P+ +
Sbjct: 4 PIVYHDQYVV---PLPDGHRFPMEKFSLLYELLLRE--------KVVKSNNIYTPECPEK 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISE-VCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
L + H Y+ + + +S+ V + +P + ++ VGGT+ L
Sbjct: 53 SLLELVHCPDYITA----YCQGTLSDKVQRRIGLP---WSEALVKRTCVAVGGTILTAKL 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL+ G + N GG HHA G GFC + D+++ ++L + K + T +I+DLD HQG+G
Sbjct: 106 ALKFGLACNTAGGTHHAFPDYGSGFCIFNDLAIATRVLQKLKLVKTVLIIDLDVHQGDGT 165
Query: 291 EKDFMNETRIFIMETCITS---KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
K F N+ +F + + K+ + L +D YL+ + L L P
Sbjct: 166 AKIFQNDLTVFTFSMHCEANFPREKQKSDLDVSLPQGLDDDGYLQILSQHLSDLLSQIKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D+I+Y+AG D+ ND G L+I+ GI RR+ LV P+ + GGY K +
Sbjct: 226 DLILYDAGVDIHANDHFGKLSITDTGIYRRERLVLSSCIAEGYPVASVIGGGYAKDLKSL 285
Query: 408 I 408
+
Sbjct: 286 V 286
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL+ G + N GG HHA G GFC + D+++ ++L + K + T +I+DL
Sbjct: 98 GTILTAKLALKFGLACNTAGGTHHAFPDYGSGFCIFNDLAIATRVLQKLKLVKTVLIIDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|119774382|ref|YP_927122.1| histone deacetylase/AcuC/AphA family protein [Shewanella
amazonensis SB2B]
gi|119766882|gb|ABL99452.1| histone deacetylase/AcuC/AphA family protein [Shewanella
amazonensis SB2B]
Length = 305
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 137/293 (46%), Gaps = 21/293 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY Y+ L H F K+ H+ +L + + + +EA+F++ P V
Sbjct: 3 PLVYHTSYSK--LVLPPKHQFPITKYAHLRQHLLE--YGHALEAQFVS------PDPVDA 52
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+ H Y+ + L + + AI + + + + + +GG+L L
Sbjct: 53 TFIKGVHDSDYVDAFLNGTLSPQAIRRL-------GFPLSHALVERTLHSLGGSLLTAKL 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
A+ RG ++++ GG+HHA G G+C + D+ L + L S MI+D D HQG+G
Sbjct: 106 AMSRGIALHLAGGYHHAHRDFGSGYCVFNDLVLAARHLIDEGHASRVMILDCDVHQGDGT 165
Query: 291 EKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ I + S K A + L ED YL+ +E + L P
Sbjct: 166 ATLCADMDDIISVSVHCDSNFPSRKPASDYDVPLPKGLEDDDYLDALEQVFQYLLHLEKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
D+I+Y+AG DV +D LG L IS QG++RRD+LV AR +P+ + GGY
Sbjct: 226 DVILYDAGVDVHHDDRLGHLNISTQGLLRRDKLVITMARNAGLPLAAVIGGGY 278
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L LA+ RG ++++ GG+HHA G G+C + D+ L + L S MI+D
Sbjct: 98 GSLLTAKLAMSRGIALHLAGGYHHAHRDFGSGYCVFNDLVLAARHLIDEGHASRVMILDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|392540847|ref|ZP_10287984.1| histone deacetylase [Pseudoalteromonas piscicida JCM 20779]
Length = 301
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 136/301 (45%), Gaps = 25/301 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY Y+ F + H F K+ ++ V+A + +N+ P+ +
Sbjct: 7 PLVYHANYS---FNFDPKHRFVMSKFARLYQE---------VDALGLIHNNVYSPEPGNP 54
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGF 229
L H E+Y+ L W + A ++ + +P + + + P+ GTL+
Sbjct: 55 SPLESVHCEQYVWDL-WRNQLDA--KMMRHIGLPWSEQLMARTFTAPL-----GTLKTAE 106
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL+ G + ++ GG HHA G GFC D++ L ++ I+ A+I DLD HQG+G
Sbjct: 107 LALKHGIACHLAGGTHHAHYDFGSGFCMVNDLAFTATHLLENNQITNALIFDLDVHQGDG 166
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
+ ++ K A I L D HYLE + LE L
Sbjct: 167 TAAMLKHNPYVYTCSIHCEKNFPFRKHASDLDIGLEVGISDTHYLEIVAHTLESLLVDLN 226
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
PDI++Y+AG DV D LG L IS GI +RD LV ++ VP+ + GGY K R
Sbjct: 227 PDIVLYDAGVDVWQGDNLGKLDISWLGIAKRDALVLTLCQKHGVPVATVIGGGYDKDHQR 286
Query: 407 I 407
+
Sbjct: 287 L 287
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL+ LAL+ G + ++ GG HHA G GFC D++ L ++ I+ A+I DL
Sbjct: 100 GTLKTAELALKHGIACHLAGGTHHAHYDFGSGFCMVNDLAFTATHLLENNQITNALIFDL 159
Query: 64 DAHQ 67
D HQ
Sbjct: 160 DVHQ 163
>gi|240137289|ref|YP_002961758.1| histone deacetylase family protein [Methylobacterium extorquens
AM1]
gi|240007255|gb|ACS38481.1| Histone deacetylase family protein [Methylobacterium extorquens
AM1]
Length = 297
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 136/292 (46%), Gaps = 21/292 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIV+ P Y +L + H F +K+ + L A+ + D + P+
Sbjct: 3 PIVFHPAYEA---ELPEGHRFPMRKYGRLAEIL---------RARGLVPDGFVTPEPADA 50
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
L AH Y+ ++ + V + E + +P V + GGTL A LA
Sbjct: 51 ALLSGAHDPAYVAAV-LAAQVPRVIERA--IGLP---VTEAVAARACASAGGTLRAARLA 104
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G + + GG HHA G GFC + D+++ L + +I+ A+IVDLD HQG+G
Sbjct: 105 LSHGLAGSTAGGSHHARRAGGAGFCVFNDVAVAALALRREGAITRALIVDLDVHQGDGTA 164
Query: 292 KDFMNETRIFIMET-CITSKAKEAIRCRIE--LAPYTEDQHYLEKIEAGLERSLRSFCPD 348
E +F + C + + + ++ L +D Y +EA L +++F PD
Sbjct: 165 DCLAREPDLFTLSIHCERNYPHDKVPGDLDIGLPDGLDDAEYFAVLEARLPALVQNFAPD 224
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
+I YNAG D +D LG L ++ G++ RD V A+ +R+P+ + GGY
Sbjct: 225 LIFYNAGVDPHRDDRLGRLCLTDAGLLARDRYVVGLAQSQRIPLCAVIGGGY 276
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL A LAL G + + GG HHA G GFC + D+++ L + +I+ A+IVDL
Sbjct: 96 GTLRAARLALSHGLAGSTAGGSHHARRAGGAGFCVFNDVAVAALALRREGAITRALIVDL 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|332663265|ref|YP_004446053.1| histone deacetylase [Haliscomenobacter hydrossis DSM 1100]
gi|332332079|gb|AEE49180.1| Histone deacetylase [Haliscomenobacter hydrossis DSM 1100]
Length = 300
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 140/303 (46%), Gaps = 28/303 (9%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
I Y P Y +KL + H F K++ I L L E ++ +N P + E
Sbjct: 4 IAYDPIYK---YKLPEGHRFPMIKYELIPEQL-------LYEGT-VSAENFFNPGPLDEA 52
Query: 173 QLLIAHTEKYLKSLK----WSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAG 228
+L+ HT +Y + L+ + AI PL V++ R GTL+
Sbjct: 53 SILLTHTLEYWQRLRDQQLTEREIRAIG--FPLTT---QLVERS-----RTIANGTLQCA 102
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
F A + G ++N+ GG HHA +G GFC DI++ L + + +++DLD HQGN
Sbjct: 103 FYAQQYGVAMNVAGGTHHAYAFRGEGFCCTNDIAVAANYLLHHQLLKKILVIDLDVHQGN 162
Query: 289 GYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
G F N+ R+F KE I L T+D+ YL ++ L L +
Sbjct: 163 GTAHIFRNDPRVFTFSMHGAKNYPLRKEVSDLDIGLPDKTDDRTYLRILKKTLPELLENV 222
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
P+++ Y +G DVL +D LG L++SP G RD V +E +P+ + GGY + A
Sbjct: 223 QPELVFYLSGVDVLESDKLGRLSLSPAGCRERDWFVLKTCKENDLPVAVSMGGGYSESLA 282
Query: 406 RII 408
I+
Sbjct: 283 LIV 285
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL+ F A + G ++N+ GG HHA +G GFC DI++ L + + +++DL
Sbjct: 97 GTLQCAFYAQQYGVAMNVAGGTHHAYAFRGEGFCCTNDIAVAANYLLHHQLLKKILVIDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|254421490|ref|ZP_05035208.1| Histone deacetylase family, putative [Synechococcus sp. PCC 7335]
gi|196188979|gb|EDX83943.1| Histone deacetylase family, putative [Synechococcus sp. PCC 7335]
Length = 304
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 134/294 (45%), Gaps = 22/294 (7%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
+P+VY P Y L H F K++ + + L V + IT+ I +P
Sbjct: 4 FPVVYHPAY---VTPLPDGHRFPMPKFRLLRDLL--------VRDRIITEAQIFQPGAPP 52
Query: 171 EEQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
+ L + HT Y+++ S A + L P + C VGGT+
Sbjct: 53 VDWLELVHTADYVQAYCSGSIETKAQRRIG-LPWSPGLVQRTCTA------VGGTILTAK 105
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL+ G + N GG HHA G GFC + D+++ +K+L I A+I+DLD HQG+G
Sbjct: 106 LALKHGIACNTAGGTHHAFPDYGSGFCIFNDLAIAIKVLQSQNLIHRALIIDLDVHQGDG 165
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
F ++ +F + K+ + L T D YL + + L L
Sbjct: 166 SAFIFKDDPSVFTFSMHCKANFPGRKQQSDLDVALDEDTGDAVYLATLRSHLYPLLAQVN 225
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
PD+++Y+AG DV +D LG LA++ +GI +RD LV PI + GGY
Sbjct: 226 PDLVLYDAGVDVHKDDRLGKLALTDEGIYQRDRLVLQTCYSAGYPIACVIGGGY 279
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL+ G + N GG HHA G GFC + D+++ +K+L I A+I+DL
Sbjct: 99 GTILTAKLALKHGIACNTAGGTHHAFPDYGSGFCIFNDLAIAIKVLQSQNLIHRALIIDL 158
Query: 64 DAHQFSDYYF-----PSAHSIKRKRKVEF--LKERKALEDEITSEPQESV 106
D HQ F PS + K F K++ L+ + + ++V
Sbjct: 159 DVHQGDGSAFIFKDDPSVFTFSMHCKANFPGRKQQSDLDVALDEDTGDAV 208
>gi|254559298|ref|YP_003066393.1| histone deacetylase [Methylobacterium extorquens DM4]
gi|254266576|emb|CAX22340.1| Histone deacetylase family protein [Methylobacterium extorquens
DM4]
Length = 297
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 136/292 (46%), Gaps = 21/292 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIV+ P Y +L + H F +K+ + L A+ + D + P+
Sbjct: 3 PIVFHPAYEA---ELPEGHRFPMRKYGRLAEIL---------RARGLVPDGFVTPEPADA 50
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
L AH Y+ ++ + V + E + +P V + GGTL A LA
Sbjct: 51 ALLSGAHDPAYVAAV-LAAQVPRVIERA--IGLP---VTEAVAARACASAGGTLRAARLA 104
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G + + GG HHA G GFC + D+++ L + +I+ A+IVDLD HQG+G
Sbjct: 105 LSHGLAGSTAGGSHHARRAGGAGFCVFNDVAVAALALRREGAITRALIVDLDVHQGDGTA 164
Query: 292 KDFMNETRIFIMET-CITSKAKEAIRCRIE--LAPYTEDQHYLEKIEAGLERSLRSFCPD 348
E +F + C + + + ++ L +D Y +EA L +++F PD
Sbjct: 165 DCLAREPDLFTLSIHCERNYPHDKVPGDLDIGLPDGLDDAEYCAVLEARLPALVQNFAPD 224
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
+I YNAG D +D LG L ++ G++ RD V A+ +R+P+ + GGY
Sbjct: 225 LIFYNAGVDPHRDDRLGRLCLTDAGLLARDRYVVGLAQSQRIPLCAVIGGGY 276
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL A LAL G + + GG HHA G GFC + D+++ L + +I+ A+IVDL
Sbjct: 96 GTLRAARLALSHGLAGSTAGGSHHARRAGGAGFCVFNDVAVAALALRREGAITRALIVDL 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|78185032|ref|YP_377467.1| histone deacetylase/AcuC/AphA family protein [Synechococcus sp.
CC9902]
gi|78169326|gb|ABB26423.1| putative histone deacetylase/AcuC/AphA family protein
[Synechococcus sp. CC9902]
Length = 305
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 129/292 (44%), Gaps = 20/292 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ +L H F K+K + L ++ I + I P ++
Sbjct: 4 PVVYHPRYSA---ELPSTHRFPMAKFKLLHQLL--------LDQGLIERKQIHVPLSIAR 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
L H +Y ++ L A + VQ+ +L VGGTL LA
Sbjct: 53 RDLEEIHPRRYHETFSRDQLTRPEQRRIGLPAT-SALVQRTWLA-----VGGTLLTARLA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
LR G + ++ GG HHA G GFC + D ++ K+L + + + +IVDLD HQG+G
Sbjct: 107 LRYGLANHLAGGTHHAHPDFGSGFCIFNDCAVAAKVLLRRREVERILIVDLDVHQGDGSA 166
Query: 292 KDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
F + R+ S K I L TED YL I L L P
Sbjct: 167 ACFQTDERVTTFSVHAASNFPLRKVNSDIDIPLPDGTEDGDYLAAIGDQLPNVLDELKPQ 226
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
++++NAG D +D LG L +S G++ RD LV R++P+ + GGY
Sbjct: 227 LVLFNAGVDPHRDDRLGRLHLSDDGLLMRDRLVLDACLRRKIPVATVIGGGY 278
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL LALR G + ++ GG HHA G GFC + D ++ K+L + + + +IVDL
Sbjct: 98 GTLLTARLALRYGLANHLAGGTHHAHPDFGSGFCIFNDCAVAAKVLLRRREVERILIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|392967178|ref|ZP_10332596.1| Histone deacetylase [Fibrisoma limi BUZ 3]
gi|387843975|emb|CCH54644.1| Histone deacetylase [Fibrisoma limi BUZ 3]
Length = 300
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 125/255 (49%), Gaps = 13/255 (5%)
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLK-WSFNVAAISEVC-PLVAVPNYFVQKCYLRP 216
T N PQ V + +L HT Y++ L+ + + + + PL A +++ ++
Sbjct: 39 TDANFFHPQPVDDRWVLGVHTATYVQQLQTLTVDPKMVRRIGFPLSA---GLIEREWVI- 94
Query: 217 MRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST 276
GT++ A R G ++N+ GG HHA KG GFC D+ + L +++ +
Sbjct: 95 ----TQGTIDCTHKARRDGVAMNVAGGTHHAFPDKGEGFCLLNDVGVAAHYLLETQQVRQ 150
Query: 277 AMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEK 333
+I+DLD HQGNG F +E R+F KE +EL ED+ YL
Sbjct: 151 ILIIDLDVHQGNGTAVMFQHEPRVFTFSMHGKDNYPLHKEQSDLDVELPTGMEDEEYLNV 210
Query: 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIV 393
+ L + +R PD + Y +G D+L +D LG L +S +G +RD VF +A ++PI
Sbjct: 211 LYDTLPKLIRQVQPDFLFYVSGVDILASDRLGKLNVSREGCRQRDRFVFGEALRHQLPIA 270
Query: 394 MLTSGGYLKQTARII 408
+ GGY + A I+
Sbjct: 271 VSMGGGYSPRIADIV 285
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++ A R G ++N+ GG HHA KG GFC D+ + L +++ + +I+DL
Sbjct: 97 GTIDCTHKARRDGVAMNVAGGTHHAFPDKGEGFCLLNDVGVAAHYLLETQQVRQILIIDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|156404296|ref|XP_001640343.1| predicted protein [Nematostella vectensis]
gi|156227477|gb|EDO48280.1| predicted protein [Nematostella vectensis]
Length = 308
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 136/299 (45%), Gaps = 34/299 (11%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV-- 169
P+++ +Y+ F H F K+ + +L K DN++ P +V
Sbjct: 2 PVIHHDQYSCPF---PPQHRFKMAKFTKLMEWLLK--------------DNVVIPNQVYR 44
Query: 170 ----SEEQLLIAHTEKYLKSLKWSFNVAAISEV-CPLVAVPNYFVQKCYLRPMRYHVGGT 224
S + L+ HT Y+++ F + ISE + P + +R R VGGT
Sbjct: 45 PFFASYDDLIKVHTPDYVRN----FLLGTISERDMKQIGFP---WSEGLVRRTRMEVGGT 97
Query: 225 LEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDA 284
+ +AL G + + GGG HHA + G GFC + D+++ L + ++ MIVDLD
Sbjct: 98 ILTARIALECGLACSTGGGTHHAFPSHGSGFCIFNDLAITASYLLDNNLVTRVMIVDLDV 157
Query: 285 HQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERS 341
HQG+G F NE +F K+ + L +D YL + A L
Sbjct: 158 HQGDGTASIFQNEPNVFTFSAHSEKNFPLRKQTSNLDLSLECGMDDLEYLTTVCAHLTWL 217
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
L + PDI++Y+AG D ++D LG L ++ G+ RD +V A R +P + GGY
Sbjct: 218 LDMWRPDIVLYDAGVDPHVDDVLGRLKLTDNGLFERDLMVLRMALHRGIPCATVIGGGY 276
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ +AL G + + GGG HHA + G GFC + D+++ L + ++ MIVDL
Sbjct: 96 GTILTARIALECGLACSTGGGTHHAFPSHGSGFCIFNDLAITASYLLDNNLVTRVMIVDL 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|163850153|ref|YP_001638196.1| histone deacetylase superfamily protein [Methylobacterium
extorquens PA1]
gi|163661758|gb|ABY29125.1| histone deacetylase superfamily [Methylobacterium extorquens PA1]
Length = 308
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 137/292 (46%), Gaps = 21/292 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIV+ P Y +L + H F +K+ + L+ A+ + D + P+
Sbjct: 14 PIVFHPAYEA---ELPEGHRFPMRKYGRLAE---------LLRARGLVPDGFVTPEPADA 61
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
L AH Y+ ++ + V + E + +P V + GGTL A LA
Sbjct: 62 ALLSGAHDPVYVAAV-LAAQVPRVIERA--IGLP---VTEAVAARACASAGGTLRAARLA 115
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G + + GG HHA G GFC + D+++ L + +I+ A+IVDLD HQG+G
Sbjct: 116 LSHGLAGSTAGGSHHARRAGGAGFCVFNDVAVAALALRREGAITRALIVDLDVHQGDGTA 175
Query: 292 KDFMNETRIFIMET-CITSKAKEAIRCRIE--LAPYTEDQHYLEKIEAGLERSLRSFCPD 348
E +F + C + + + ++ L +D Y +EA L +++F PD
Sbjct: 176 DCLAREPDLFTLSIHCERNYPHDKVPGDLDIGLPDGLDDAEYCAVLEARLPALVQNFAPD 235
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
+I YNAG D +D LG L ++ G++ RD V A+ +R+P+ + GGY
Sbjct: 236 LIFYNAGVDPHRDDRLGRLCLTDAGLLARDRYVVGLAQSQRIPLCAVIGGGY 287
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL A LAL G + + GG HHA G GFC + D+++ L + +I+ A+IVDL
Sbjct: 107 GTLRAARLALSHGLAGSTAGGSHHARRAGGAGFCVFNDVAVAALALRREGAITRALIVDL 166
Query: 64 DAHQ 67
D HQ
Sbjct: 167 DVHQ 170
>gi|432891572|ref|XP_004075590.1| PREDICTED: uncharacterized protein SYNPCC7002_A1628-like [Oryzias
latipes]
Length = 341
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 124/264 (46%), Gaps = 10/264 (3%)
Query: 148 IFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNY 207
+ ++L++ + IT+ + P+ S + L HTE YL S + +
Sbjct: 64 VLHFLLKDQVITEKQVWVPEIASRDLLSCVHTEDYLNKF-LSGKTSEQEQRRTGFPWSEG 122
Query: 208 FVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKL 267
V +C RY GGT+ A AL+RG + + GG HHA G GFC D+++ K
Sbjct: 123 IVSRC-----RYETGGTVLAAEAALQRGLACSTAGGTHHAFPGYGSGFCLLNDLAVAAKY 177
Query: 268 LFQS-KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAP 323
L + + +IVDLD HQG+G F E +F K+ I L
Sbjct: 178 LKEDCPTKRKILIVDLDVHQGDGTAFIFKEEPAVFTFSVHCGKNFPLRKQESDLDISLED 237
Query: 324 YTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFM 383
ED+ YL +EA L L++F PD+++Y+AG D D LG L ++ QG+ RRD V
Sbjct: 238 GLEDEEYLSTVEAYLPWLLQTFRPDLVLYDAGVDPHWEDELGRLHLTDQGLYRRDLFVMK 297
Query: 384 KARERRVPIVMLTSGGYLKQTARI 407
+ VPI + GGY + R+
Sbjct: 298 TTVNQGVPIATVIGGGYSRDMDRL 321
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ A AL+RG + + GG HHA G GFC D+++ K L + + +IVD
Sbjct: 133 GTVLAAEAALQRGLACSTAGGTHHAFPGYGSGFCLLNDLAVAAKYLKEDCPTKRKILIVD 192
Query: 63 LDAHQ 67
LD HQ
Sbjct: 193 LDVHQ 197
>gi|114705872|ref|ZP_01438775.1| histone deacetylase family protein [Fulvimarina pelagi HTCC2506]
gi|114538718|gb|EAU41839.1| histone deacetylase family protein [Fulvimarina pelagi HTCC2506]
Length = 300
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 133/296 (44%), Gaps = 22/296 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIV+ P ++ F ++ H F K F+ L K L E + P
Sbjct: 4 PIVHHPAFDARF---DEAHRFPMSK----FSRLAK----ILKEDGLDGPNGFYVPAPALP 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
L +AH +Y+ + + A + V P ++ R GGT+ LA
Sbjct: 53 GWLQLAHDARYVDQVLGANVPPATEKAIGFVVDPAVALRS------RTATGGTVLTARLA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G + N GG HHAS T G GF + D+++ K+L + +IVD D HQG+G
Sbjct: 107 LGEGLACNTAGGSHHASATGGAGFSVFNDVAVAAKVLLADGDVDRILIVDCDVHQGDGTA 166
Query: 292 KDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ F ++R+F + K A++ + L T D YLE + L+++ P
Sbjct: 167 RIFEGDSRVFTF-SVHGEKNYPAVKANSDLDLSLPDRTGDTAYLEALIPALDQAFEQAKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
D +NAG D +D LG L++S +G+ RD V R+R++P+ + GGY +
Sbjct: 226 DFAFFNAGVDPHTDDRLGRLSLSDEGLAERDRRVIGFLRDRQIPVACVIGGGYSRD 281
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G + N GG HHAS T G GF + D+++ K+L + +IVD
Sbjct: 98 GTVLTARLALGEGLACNTAGGSHHASATGGAGFSVFNDVAVAAKVLLADGDVDRILIVDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|440751264|ref|ZP_20930498.1| Putative histone deacetylase/AcuC/AphA family protein [Mariniradius
saccharolyticus AK6]
gi|436480128|gb|ELP36385.1| Putative histone deacetylase/AcuC/AphA family protein [Mariniradius
saccharolyticus AK6]
Length = 279
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 121/254 (47%), Gaps = 9/254 (3%)
Query: 158 ITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPM 217
+ ++N +P ++ + + H YL+ L+ N++ P Q+ R +
Sbjct: 17 VKEENFFQPAKLDDRWIKNTHCSTYLEKLR---NLSLSKSEIRKTGFP--LSQQLVEREV 71
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
+ G+++A AL G +NI GG HHA +G GFC DI++ L + +
Sbjct: 72 HI-MAGSVQASLYALEHGIGMNIAGGTHHAYAERGEGFCLLNDIAISANYLLDNALANKV 130
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
+ VDLD HQGNG K F T +F + KE I L T DQ YL +
Sbjct: 131 LAVDLDVHQGNGTAKLFEENTSVFTFSMHGAANYPMHKEKSDLDIGLPDKTGDQVYLNIL 190
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
L+R + +F PD ++Y G DVL D +G L +S G +RD +V A+ ++PI+
Sbjct: 191 SENLKRLIDTFQPDFMIYQCGVDVLETDKIGRLGMSIGGCKQRDRIVLEAAKANQIPIMC 250
Query: 395 LTSGGYLKQTARII 408
GGY ++ + II
Sbjct: 251 CMGGGYSEKISHII 264
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+++A AL G +NI GG HHA +G GFC DI++ L + + + VDL
Sbjct: 76 GSVQASLYALEHGIGMNIAGGTHHAYAERGEGFCLLNDIAISANYLLDNALANKVLAVDL 135
Query: 64 DAHQ 67
D HQ
Sbjct: 136 DVHQ 139
>gi|409202838|ref|ZP_11231041.1| histone deacetylase [Pseudoalteromonas flavipulchra JG1]
Length = 301
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 134/301 (44%), Gaps = 25/301 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY Y+ F + H F K+ ++ V+A + +N+ P+
Sbjct: 7 PLVYHANYS---FNFDPKHRFVMSKFARLYQE---------VDALRLIHNNVYSPEPGDP 54
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGF 229
L H E+Y+ L W + A ++ + +P + + + P+ GTL+
Sbjct: 55 SPLESVHCEQYIWDL-WRNQLDA--KMMRRIGLPWSEQLMARTFTAPL-----GTLKTAE 106
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL+ G + ++ GG HHA G GFC D++ L + I+ A+I DLD HQG+G
Sbjct: 107 LALKHGIACHLAGGTHHAHYDFGSGFCMVNDLAFTATHLLDNNQITNALIFDLDVHQGDG 166
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
+ ++ K A I L D HYLE + LE L
Sbjct: 167 TAAMLKHNPYVYTCSIHCEKNFPFRKHASDLDIGLEIGISDTHYLEIVAHTLESLLIDLN 226
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
PDI++Y+AG DV D LG L IS GI +RD LV ++ VP+ + GGY K R
Sbjct: 227 PDIVLYDAGVDVWQGDNLGKLDISWLGIAKRDALVLTLCQKHGVPVATVIGGGYDKDHQR 286
Query: 407 I 407
+
Sbjct: 287 L 287
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL+ LAL+ G + ++ GG HHA G GFC D++ L + I+ A+I DL
Sbjct: 100 GTLKTAELALKHGIACHLAGGTHHAHYDFGSGFCMVNDLAFTATHLLDNNQITNALIFDL 159
Query: 64 DAHQ 67
D HQ
Sbjct: 160 DVHQ 163
>gi|381393718|ref|ZP_09919437.1| histone deacetylase/AcuC/AphA family protein [Glaciecola punicea
DSM 14233 = ACAM 611]
gi|379330612|dbj|GAB54570.1| histone deacetylase/AcuC/AphA family protein [Glaciecola punicea
DSM 14233 = ACAM 611]
Length = 299
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 140/303 (46%), Gaps = 26/303 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+V+ P Y+ L H F +K++ I + L A ++++ + P+ +
Sbjct: 3 PLVFHPIYSQ--LPLPPKHRFPIEKYQGIKDQLL---------ANGVSENAFLTPEAIPL 51
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAG 228
E L +AH+ KY+ S + + + AI + +P FV++ + VGGT+
Sbjct: 52 EDLKVAHSAKYVDSFIDGTISQKAIRRL----GMPWSQQFVKRTL-----HAVGGTVLTS 102
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
LAL G ++N+ GG+HHA G GFC + DI L + + + I + D D HQG+
Sbjct: 103 KLALEHGLALNLTGGYHHAFSDFGSGFCVFNDIVLSATHMLKQEGIDKVLTFDCDVHQGD 162
Query: 289 GYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
G I+ + K+ L D YL +E L+ + S
Sbjct: 163 GTALLASGNDAIYTVSLHCEKNFPARKQHSDLDFPLERGMTDDEYLYTVECALQLAFNSA 222
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PD ++Y+AG D+ +D LG L I+ +G+ RD+LVF + VP+ + GGY +
Sbjct: 223 SPDAVIYDAGVDIHESDDLGYLNITTKGVFERDKLVFDACKRHGVPVAAVIGGGYQRNID 282
Query: 406 RII 408
++
Sbjct: 283 DLV 285
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G ++N+ GG+HHA G GFC + DI L + + + I + D
Sbjct: 97 GTVLTSKLALEHGLALNLTGGYHHAFSDFGSGFCVFNDIVLSATHMLKQEGIDKVLTFDC 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|374584482|ref|ZP_09657574.1| histone deacetylase superfamily [Leptonema illini DSM 21528]
gi|373873343|gb|EHQ05337.1| histone deacetylase superfamily [Leptonema illini DSM 21528]
Length = 313
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 134/294 (45%), Gaps = 25/294 (8%)
Query: 114 VYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQ 173
+Y P YN+ + H F + K+ I++ L E Q EP S +
Sbjct: 24 IYSPGYNLQL----EAHVFPAVKFSLIYSKLK--------EDPAFAQHRFFEPMPASFDD 71
Query: 174 LLIAHTEKYLKSLK-WSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
H + YL+ L+ +F+ PL K + GGT+ A +AL
Sbjct: 72 AATVHKKDYLQDLQTLNFSRRVYRSELPLT--------KSIVDAFFLGTGGTIMAAEMAL 123
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
G ++N+ GGFHHA GFC D+++ V++L + K I A+I+DLD HQGNG K
Sbjct: 124 DYGRAMNLSGGFHHAFADHAEGFCYLNDVAIAVRVLQKQKRIKRALIIDLDVHQGNGTAK 183
Query: 293 DFMNETRIFI--METCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
F + +F M KE I L D+ YL +E L + +S+ D++
Sbjct: 184 IFRHSRHVFTFSMHEEKNYPIKEKGSLDIGLDSAMHDEEYLNLLETNLMKVRKSYKADLV 243
Query: 351 VYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT 404
+ AG D ND LG L+IS +G+ RD +V + PI + +GGY +T
Sbjct: 244 FFVAGVDPYENDRLGGLSISKEGMAARDRMVCEMFAD--TPIAAVLAGGYAIKT 295
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A +AL G ++N+ GGFHHA GFC D+++ V++L + K I A+I+DL
Sbjct: 114 GTIMAAEMALDYGRAMNLSGGFHHAFADHAEGFCYLNDVAIAVRVLQKQKRIKRALIIDL 173
Query: 64 DAHQ 67
D HQ
Sbjct: 174 DVHQ 177
>gi|332532061|ref|ZP_08407944.1| putative histone deacetylase family protein [Pseudoalteromonas
haloplanktis ANT/505]
gi|332038402|gb|EGI74846.1| putative histone deacetylase family protein [Pseudoalteromonas
haloplanktis ANT/505]
Length = 302
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 135/299 (45%), Gaps = 21/299 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ F + H F K+ H++ + V + N++EP +
Sbjct: 8 PLVYHPNYS---FSFDPKHRFVMSKFAHLYQH---------VAELGLIGSNLVEPILGTP 55
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E L + H + Y++ L W + + + +P + ++ R GTL+ LA
Sbjct: 56 EPLELVHCDNYIQDL-WHNRLD--EKAMRRIGLP--WSKELMARTFTA-AQGTLQTARLA 109
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L+ G + ++ GG HHA G GFC D++ + L +S ++ +I DLD HQG+G
Sbjct: 110 LKHGIACHLAGGTHHAHNDFGSGFCMVNDLAFTTQTLIESGEVTNVLIFDLDVHQGDGTA 169
Query: 292 KDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
++ + K A I LA +D YL ++ L L+ P
Sbjct: 170 AMLQHQPYAYTCSIHCEKNFPFRKSASDLDIGLANNMKDDEYLAIVDETLSYLLKELNPS 229
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
+++Y+AG D+ D LG L IS GI +RD LV + E P+ + GGY + R+
Sbjct: 230 LVLYDAGVDIWQGDGLGKLDISWDGIAKRDHLVLKRCLEHNTPVATVIGGGYDRDHLRL 288
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL+ LAL+ G + ++ GG HHA G GFC D++ + L +S ++ +I DL
Sbjct: 101 GTLQTARLALKHGIACHLAGGTHHAHNDFGSGFCMVNDLAFTTQTLIESGEVTNVLIFDL 160
Query: 64 DAHQ 67
D HQ
Sbjct: 161 DVHQ 164
>gi|410910398|ref|XP_003968677.1| PREDICTED: uncharacterized protein SYNPCC7002_A1628-like [Takifugu
rubripes]
Length = 333
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 143/311 (45%), Gaps = 26/311 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PI++ +Y L H F K+ + ++L+K + IT++ + P+ S
Sbjct: 33 PIIHHSKY---VCDLPTNHRFPMGKFPRVLHFLFK--------DQVITENQVWVPEIASS 81
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGF 229
+ L HTE+YL + N + P V +C RY GGTL A
Sbjct: 82 DLLSCVHTEEYLNNF---MNGRINEQEQRRTGFPWSEGIVTRC-----RYETGGTLLAAE 133
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL+RG + + GG HHA G GFC D+++ K + S +IVDLD HQG+G
Sbjct: 134 LALQRGLACSTAGGTHHAFPGFGSGFCLLNDLAVAAKYVSASLK-RKVLIVDLDVHQGDG 192
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
F E R+F K+ + + ED+ YL +E L L +F
Sbjct: 193 TAFIFKEEPRVFTFSVHCGKNFPLRKQQSDLDVSVDDGLEDKDYLSTVEDHLPWLLDTFR 252
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
PD+++Y+AG D D LG L ++ QG+ +RD V + VP+ + GGY + +
Sbjct: 253 PDLVLYDAGVDPHREDELGKLCLTDQGLYQRDLYVMQTVVGKGVPVATVIGGGYSRDIDK 312
Query: 407 I-IADSILNLA 416
+ I SI++ A
Sbjct: 313 LAIRHSIVHRA 323
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL A LAL+RG + + GG HHA G GFC D+++ K + S +IVDL
Sbjct: 127 GTLLAAELALQRGLACSTAGGTHHAFPGFGSGFCLLNDLAVAAKYVSASLK-RKVLIVDL 185
Query: 64 DAHQ 67
D HQ
Sbjct: 186 DVHQ 189
>gi|390944571|ref|YP_006408332.1| deacetylase [Belliella baltica DSM 15883]
gi|390417999|gb|AFL85577.1| deacetylase, histone deacetylase/acetoin utilization protein
[Belliella baltica DSM 15883]
Length = 301
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 119/254 (46%), Gaps = 9/254 (3%)
Query: 158 ITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPM 217
+T N EP+++ +L H Y + L N+ P + K +
Sbjct: 39 VTSANFFEPKDLDNRWVLNTHDFDYFEKL---LNLRLSKSEIRKTGFP---LSKALIDRE 92
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
+ + G++EA AL G ++NI GG HHA +G GFC DI++ L ++ +
Sbjct: 93 THIMQGSIEASLFALEYGIAMNIAGGTHHAFTDRGEGFCLLNDIAISANYLLENFLVKKV 152
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
+++DLD HQGNG + F N+ +F S KE I L +D YL+ +
Sbjct: 153 LVIDLDVHQGNGTAQIFENKDEVFTFSMHGASNYPMHKEKSDLDIGLPDKIQDDQYLDLL 212
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
+ L + PD I+Y G DVL +D LG L ++ QG RD +V A+ ++PI+
Sbjct: 213 QLHLVPLIDQVQPDFIIYQCGVDVLDSDKLGRLGLTIQGCKERDRIVLETAKINQIPIMC 272
Query: 395 LTSGGYLKQTARII 408
GGY + + II
Sbjct: 273 CMGGGYSPKISNII 286
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++EA AL G ++NI GG HHA +G GFC DI++ L ++ + +++DL
Sbjct: 98 GSIEASLFALEYGIAMNIAGGTHHAFTDRGEGFCLLNDIAISANYLLENFLVKKVLVIDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|392533893|ref|ZP_10281030.1| histone deacetylase superfamily protein [Pseudoalteromonas arctica
A 37-1-2]
Length = 297
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 124/251 (49%), Gaps = 17/251 (6%)
Query: 165 EPQEVSEEQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGG 223
EP++V+ QL + H+++Y+ L + + AI ++ P + Q+ R + +GG
Sbjct: 44 EPKKVTVSQLALCHSQRYIDDFLNGTLSDKAIKKM----GFP--YSQQLVERTL-LSIGG 96
Query: 224 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 283
+++A A + N+ GG+HH+ G GFC + D+++ L ++ T +I D D
Sbjct: 97 SIQAAEAAFSHDLTFNLSGGYHHSHSDFGSGFCIFNDLAIAAAHLINTEQADTVLIFDCD 156
Query: 284 AHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCRIE------LAPYTEDQHYLEKIEAG 337
HQG+G + N +I TC + R + E L T D YL ++
Sbjct: 157 VHQGDGTAQITQNHNQII---TCSIHCEQNFPRNKQESTYDFALPAKTADDEYLATLKQA 213
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L+ +R PDII+YNAG D+ D LGL IS G+ RD V ++ ++P++
Sbjct: 214 LDFCVRIHNPDIILYNAGADIYTKDELGLFNISLNGVYERDLFVLNFCKQHQIPLMCALG 273
Query: 398 GGYLKQTARII 408
GGY + + +I
Sbjct: 274 GGYQRNLSSLI 284
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+++A A + N+ GG+HH+ G GFC + D+++ L ++ T +I D
Sbjct: 96 GSIQAAEAAFSHDLTFNLSGGYHHSHSDFGSGFCIFNDLAIAAAHLINTEQADTVLIFDC 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|390363404|ref|XP_784008.3| PREDICTED: uncharacterized protein SYNPCC7002_A1628-like
[Strongylocentrotus purpuratus]
Length = 262
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 117/247 (47%), Gaps = 9/247 (3%)
Query: 166 PQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTL 225
P V++++L+ HTE+Y++ + +A + V +C RY GGT+
Sbjct: 4 PVHVTKDELIRVHTEEYIEKF-FEGKTSAKEQRVTGFTWSEGLVSRC-----RYETGGTI 57
Query: 226 EAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAH 285
A LAL RG N GGG HHA G GFC D+++ L+ + +I+DLD H
Sbjct: 58 LAAELALGRGLVCNTGGGTHHAFPEHGAGFCLLNDMAVAASLMVHRGKVDRVLIIDLDVH 117
Query: 286 QGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSL 342
QG+ F + +F + K+ + + T D Y+ I+ + L
Sbjct: 118 QGDATALIFQEDPSVFTLSVHCGKNYPLKKQQSDLDVSVDRGTGDDDYMRIIQDHIPSVL 177
Query: 343 RSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402
+F P ++ ++AG D +D LG L ++ QG+ RRD V + +R +P V + GGY K
Sbjct: 178 TNFRPGLVFFDAGVDPHKDDALGYLELTDQGLFRRDYWVMNEVIQRGIPCVTVIGGGYDK 237
Query: 403 QTARIIA 409
R+ A
Sbjct: 238 DIDRLAA 244
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LAL RG N GGG HHA G GFC D+++ L+ + +I+DL
Sbjct: 55 GTILAAELALGRGLVCNTGGGTHHAFPEHGAGFCLLNDMAVAASLMVHRGKVDRVLIIDL 114
Query: 64 DAHQ 67
D HQ
Sbjct: 115 DVHQ 118
>gi|347754121|ref|YP_004861685.1| deacetylase [Candidatus Chloracidobacterium thermophilum B]
gi|347586639|gb|AEP11169.1| Deacetylase, including histone deacetylase and acetoin utilization
protein [Candidatus Chloracidobacterium thermophilum B]
Length = 299
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 130/273 (47%), Gaps = 18/273 (6%)
Query: 139 HIFNYL-WKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISE 197
H+F + + + L+E ++ ++++ P EE +L+AHT Y L A +
Sbjct: 17 HVFPMVKFPRVHAQLIEEGTLSPEDVVAPAPAREEDILLAHTRDYWTRL-------AAGQ 69
Query: 198 VCPL----VAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGG 253
+ P + +P + + +R R GTL A AL G + N+ GG HHA G
Sbjct: 70 LTPRELRRLGLP--WSEGLVMR-ARLAAQGTLNAARHALAEGVAGNLAGGTHHAFPDHGE 126
Query: 254 GFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK--- 310
GFC DI++ V++L + + ++D D HQGN F E+ +F +
Sbjct: 127 GFCVLNDIAIAVRVLQREGDVGRVALIDCDVHQGNANAVIFAGESDVFTFSMHGRNNYPL 186
Query: 311 AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAIS 370
K +EL D YLE + + R L +F PD++ Y AG D ++D G LA++
Sbjct: 187 RKPPGSLDLELPDGMTDAAYLEILREYVPRILAAFRPDLVFYLAGVDPYVHDRFGRLALT 246
Query: 371 PQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+G+ RRDE V R+ +P+ + SGGY +
Sbjct: 247 LEGLRRRDEFVLRTCRQAGIPVTITLSGGYARD 279
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL A AL G + N+ GG HHA G GFC DI++ V++L + + ++D
Sbjct: 96 GTLNAARHALAEGVAGNLAGGTHHAFPDHGEGFCVLNDIAIAVRVLQREGDVGRVALIDC 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|33865411|ref|NP_896970.1| histone deacetylase/AcuC/AphA family protein [Synechococcus sp. WH
8102]
gi|33632580|emb|CAE07392.1| Putative histone deacetylase/AcuC/AphA family protein
[Synechococcus sp. WH 8102]
Length = 323
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 101/196 (51%), Gaps = 8/196 (4%)
Query: 208 FVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKL 267
VQ+ +L VGGTL LAL+ G + ++ GG HHA G GFC + D++ ++
Sbjct: 106 LVQRTWL-----SVGGTLLTARLALQHGIACHLAGGTHHAHPGFGSGFCIFNDVATTARV 160
Query: 268 LFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPY 324
L + + ++VDLD HQG+G F +E RI + S K A I L
Sbjct: 161 LLDNGEVQRLLVVDLDVHQGDGTAACFADEPRITTLSVHAASNFPLRKVASDIDIPLEDA 220
Query: 325 TEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMK 384
T D YL I L + L PD++++NAG D +D LG L +S +G++RRD LV
Sbjct: 221 TGDDDYLAAIGDRLPQVLDDQQPDLVLFNAGVDPHRDDRLGRLELSDEGLLRRDRLVLDA 280
Query: 385 ARERRVPIVMLTSGGY 400
A R +PI + GGY
Sbjct: 281 ALRRSIPIATVIGGGY 296
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL LAL+ G + ++ GG HHA G GFC + D++ ++L + + ++VDL
Sbjct: 116 GTLLTARLALQHGIACHLAGGTHHAHPGFGSGFCIFNDVATTARVLLDNGEVQRLLVVDL 175
Query: 64 DAHQ 67
D HQ
Sbjct: 176 DVHQ 179
>gi|108803993|ref|YP_643930.1| histone deacetylase superfamily protein [Rubrobacter xylanophilus
DSM 9941]
gi|108765236|gb|ABG04118.1| histone deacetylase superfamily [Rubrobacter xylanophilus DSM 9941]
Length = 301
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 120/255 (47%), Gaps = 15/255 (5%)
Query: 162 NIIEPQEVSEEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH 220
+ EP+ +E LL AH+ YL+ + S + + + + + R
Sbjct: 39 GLREPRRAKDEDLLRAHSPSYLRRVVSGSLGKQELRRL-------GFPWSERLVERSRRA 91
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
GGT++A AL G + N+ GG HHA +G GFC + D ++ ++ + + + A ++
Sbjct: 92 AGGTIDACLAALEEGIAANLAGGTHHAFADRGEGFCVFNDAAVAIRAVQAAGLVERAAVI 151
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAG 337
D D HQG+G F + +F K + L +D +LE + G
Sbjct: 152 DTDVHQGDGTAAIFAADGSVFTFSVHGEKNYPFRKGRSDLDVGLPDGADDGAFLEALSEG 211
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
LER L F P + VY AG D D LG LA+S +G+ RD +V R R VP+ + +
Sbjct: 212 LERVLEGFRPQLAVYLAGADPFAGDRLGRLAVSKEGLAERDRIVLEGCRGRGVPVAVTMA 271
Query: 398 GGYLKQTARIIADSI 412
GGY AR I+D++
Sbjct: 272 GGY----ARDISDTV 282
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++A AL G + N+ GG HHA +G GFC + D ++ ++ + + + A ++D
Sbjct: 94 GTIDACLAALEEGIAANLAGGTHHAFADRGEGFCVFNDAAVAIRAVQAAGLVERAAVIDT 153
Query: 64 DAHQ 67
D HQ
Sbjct: 154 DVHQ 157
>gi|373949015|ref|ZP_09608976.1| histone deacetylase superfamily [Shewanella baltica OS183]
gi|386325146|ref|YP_006021263.1| histone deacetylase superfamily protein [Shewanella baltica BA175]
gi|333819291|gb|AEG11957.1| histone deacetylase superfamily [Shewanella baltica BA175]
gi|373885615|gb|EHQ14507.1| histone deacetylase superfamily [Shewanella baltica OS183]
Length = 302
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 137/300 (45%), Gaps = 21/300 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY Y+ L H F + K+ H+ YL ++ + T P ++
Sbjct: 5 PLVYHASYSK--LALPPHHRFPTTKYTHLRQYL--------LDNQLATPAQFHTPTAMTA 54
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+ ++ H +Y++ + + AA+ + + + + + V GT L
Sbjct: 55 QDVMQVHQREYVEQFIAGTLPTAALRRI-------GFPWSEALVERTLHSVAGTTLTASL 107
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
A+ +G +++ GG+HHA G G+C + D+ L + S+ + +I D D HQG+G
Sbjct: 108 AINQGIGLHLTGGYHHAHYDFGSGYCIFNDLILAARNAIASQQVHKVLIFDCDVHQGDGS 167
Query: 291 EKDFMNETRIFIMET-CITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
I I C + K+ IEL ++D YLE +E L +R P
Sbjct: 168 ATLSQRHQGIIICSIHCKENFPSRKQHSHHDIELTKGSDDNLYLETVEQTLALLIRIHQP 227
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D+I+Y+AG D+ ND LGLL IS +G+ RRD V A+ +PI + GGY + ++
Sbjct: 228 DLILYDAGVDIHQNDDLGLLNISQEGLFRRDLTVLSMAKSENIPIAAVIGGGYSRDALQL 287
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LA+ +G +++ GG+HHA G G+C + D+ L + S+ + +I D
Sbjct: 100 GTTLTASLAINQGIGLHLTGGYHHAHYDFGSGYCIFNDLILAARNAIASQQVHKVLIFDC 159
Query: 64 DAHQ 67
D HQ
Sbjct: 160 DVHQ 163
>gi|126173859|ref|YP_001050008.1| histone deacetylase superfamily protein [Shewanella baltica OS155]
gi|386340619|ref|YP_006036985.1| histone deacetylase superfamily protein [Shewanella baltica OS117]
gi|125997064|gb|ABN61139.1| histone deacetylase superfamily [Shewanella baltica OS155]
gi|334863020|gb|AEH13491.1| histone deacetylase superfamily [Shewanella baltica OS117]
Length = 302
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 139/302 (46%), Gaps = 25/302 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY Y+ L H F + K+ H+ YL +E + T P ++
Sbjct: 5 PLVYHASYSK--LALPPHHRFPTTKYAHLRQYL--------LENQLATLAQFHTPTAMTA 54
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+ ++ H +Y++ + + AA+ + + + + + V GT L
Sbjct: 55 QDVMQVHQREYVEQFIAGTLPTAALRRI-------GFPWSEALVERTLHSVAGTTLTASL 107
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
A+ +G +++ GG+HHA G G+C + D+ L + S + +I D D HQG+G
Sbjct: 108 AINQGIGLHLTGGYHHAHYDFGSGYCIFNDLILAARNAIASLQVHKVLIFDCDVHQGDGS 167
Query: 291 EKDFMNETRIFIMETCITSKA-----KEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
+++ I+ I K K+ IEL ++D YLE +E L +R
Sbjct: 168 AT--LSQRHQGIISCSIHCKENFPSRKQHSHHDIELTKGSDDNLYLETVEQTLALLIRIH 225
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PD+I+Y+AG D+ ND LGLL IS +G+ RRD V A+ +PI + GGY +
Sbjct: 226 QPDLILYDAGVDIHQNDDLGLLNISQEGLFRRDLTVLSMAKSENIPIAAVIGGGYSRDAL 285
Query: 406 RI 407
++
Sbjct: 286 QL 287
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LA+ +G +++ GG+HHA G G+C + D+ L + S + +I D
Sbjct: 100 GTTLTASLAINQGIGLHLTGGYHHAHYDFGSGYCIFNDLILAARNAIASLQVHKVLIFDC 159
Query: 64 DAHQ 67
D HQ
Sbjct: 160 DVHQ 163
>gi|427702729|ref|YP_007045951.1| deacetylase [Cyanobium gracile PCC 6307]
gi|427345897|gb|AFY28610.1| deacetylase, histone deacetylase/acetoin utilization protein
[Cyanobium gracile PCC 6307]
Length = 321
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 133/293 (45%), Gaps = 22/293 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y V L H F +K++ L K L A+ I +P
Sbjct: 4 PLVYHPAYAV---PLPSGHRFPMQKFR-----LLKERLEQLELAR---PGQIHQPLPAPR 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPL-VAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
L + H Y ++ +S + EV + + V V++ +L VGGT+ L
Sbjct: 53 RWLELVHGRGYHEA--FSRGLLTPQEVRRIGLPVSEPLVRRSWLA-----VGGTVLTARL 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
ALR G + ++ GG HHA G GFC + D ++ ++L + ++VDLD HQG+G
Sbjct: 106 ALRHGLACHLAGGTHHAFPLHGSGFCIFNDCAVAARVLLAEGLVRQVLVVDLDVHQGDGT 165
Query: 291 EKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
F + R+F S K+ + L D YL +E L L P
Sbjct: 166 AAIFTGDPRVFSFSMHAASNFPLHKQTGDLDLALEDGVGDDAYLRTLERTLPDLLDQVRP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
D+++YNAG D +D LG L +S G+ RRD LV A RR+P+ + GGY
Sbjct: 226 DLVLYNAGVDPHRDDRLGRLELSDDGLHRRDRLVIDAALRRRLPVATVIGGGY 278
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LALR G + ++ GG HHA G GFC + D ++ ++L + ++VDL
Sbjct: 98 GTVLTARLALRHGLACHLAGGTHHAFPLHGSGFCIFNDCAVAARVLLAEGLVRQVLVVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|170744430|ref|YP_001773085.1| histone deacetylase superfamily protein [Methylobacterium sp. 4-46]
gi|168198704|gb|ACA20651.1| histone deacetylase superfamily [Methylobacterium sp. 4-46]
Length = 298
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 133/297 (44%), Gaps = 25/297 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIV+ P Y +L + H F +K+ + L A+ + + + P+
Sbjct: 3 PIVFHPAYEA---ELPEGHRFPMRKYGRLAEIL---------RARGLVPNGFVRPEPAGA 50
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ +AH Y+ + + A+ + + +P V R GGTL AG LA
Sbjct: 51 PTVALAHDRAYVDQVLTATVPRAVEK---RIGLP---VDAGVARRSLASAGGTLLAGRLA 104
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G + + GG HHA GGGFC D+++ L + +I A+++DLD HQG+G
Sbjct: 105 LAGGLAGSTAGGSHHARRAGGGGFCVLNDVAVAALALLREGAIRRALVIDLDVHQGDGTA 164
Query: 292 KDFMNETRIFIM-----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
E +F T K + + L +D Y+ + + R L +
Sbjct: 165 DCLAGEPDLFTFSMHGERNYPTDKVPGDL--DVGLPDGLDDAGYMAALVRHVPRLLDALR 222
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD++ YNAG D +D LG LA++ +G++ RD V + R R +P+ + GGY +
Sbjct: 223 PDLVFYNAGVDPHRDDRLGRLALTDEGLLARDRHVVGETRRRGIPLAAVIGGGYATE 279
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL AG LAL G + + GG HHA GGGFC D+++ L + +I A+++DL
Sbjct: 96 GTLLAGRLALAGGLAGSTAGGSHHARRAGGGGFCVLNDVAVAALALLREGAIRRALVIDL 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|217973889|ref|YP_002358640.1| histone deacetylase superfamily protein [Shewanella baltica OS223]
gi|217499024|gb|ACK47217.1| histone deacetylase superfamily [Shewanella baltica OS223]
Length = 302
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 141/302 (46%), Gaps = 25/302 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY Y+ L H F + K+ ++ YL +E + T P ++
Sbjct: 5 PLVYHASYSK--LALPPHHRFPTTKYANLRQYL--------LENQLATPAQFHTPTAMTV 54
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+ ++ H +Y++ + + AA+ + + + + + V GT L
Sbjct: 55 QDVMQVHQREYVEQFIAGTLPTAALRRI-------GFPWSEALVERTLHSVAGTTLTASL 107
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
A+ +G +++ GG+HHA G G+C + D+ L K S+ + +I D D HQG+G
Sbjct: 108 AINQGIGLHLTGGYHHAHYDFGSGYCIFNDLILAAKNAIASQQVHKVLIFDCDVHQGDGS 167
Query: 291 EKDFMNETRIFIMETCITSKA-----KEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
+++ I+ I K K+ IEL ++D YLE +E L +R
Sbjct: 168 AT--LSQRHQGIISCSIHCKENFPSRKQHSHHDIELTKGSDDNLYLETVEQTLALLIRIH 225
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PD+I+Y+AG D+ ND LGLL IS +G+ RRD V A+ +PI ++ GGY +
Sbjct: 226 QPDLILYDAGVDIHPNDDLGLLNISQEGLFRRDLTVLSMAKSENIPIAVVIGGGYSRDAL 285
Query: 406 RI 407
++
Sbjct: 286 QL 287
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LA+ +G +++ GG+HHA G G+C + D+ L K S+ + +I D
Sbjct: 100 GTTLTASLAINQGIGLHLTGGYHHAHYDFGSGYCIFNDLILAAKNAIASQQVHKVLIFDC 159
Query: 64 DAHQ 67
D HQ
Sbjct: 160 DVHQ 163
>gi|332307586|ref|YP_004435437.1| histone deacetylase [Glaciecola sp. 4H-3-7+YE-5]
gi|332174915|gb|AEE24169.1| Histone deacetylase [Glaciecola sp. 4H-3-7+YE-5]
Length = 318
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 146/301 (48%), Gaps = 22/301 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+V+ P Y+ L H F +K++ I++ L I + +A+F +P ++
Sbjct: 22 PLVFHPIYSQ--LDLPFKHRFPIEKYQAIYDRL---ISLGVPKAQFY------QPDALTP 70
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
QL ++ Y+ L + E + + + ++ R + V GT+ LA
Sbjct: 71 SQLKRVYSPDYVNGL-----TQGVLEPKAMRRIGFPWSEQLIQRSLTA-VAGTVMTSTLA 124
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L +G ++N+ GG+HHA G GFC + D+ L + Q+ +I+ +I D D HQG+G
Sbjct: 125 LEQGKALNLTGGYHHAFANFGAGFCLFNDLYLAALNMLQASAINKVLIFDCDVHQGDGTA 184
Query: 292 KDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
K N ++F + E + K+ LA D YL +E L ++ +F P
Sbjct: 185 KLASNNPKVFTVSLHGEKNFPHR-KQVSDLDFPLAKGATDDEYLTVVERALHQAFSTFQP 243
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D ++Y+AG D+ +ND LG L IS G+ RD +VF ++ VP+ + GGY + + +
Sbjct: 244 DAVIYDAGVDIHVNDDLGHLHISTPGVYARDCMVFDACSKQGVPLAAVIGGGYQRDISAL 303
Query: 408 I 408
+
Sbjct: 304 V 304
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL +G ++N+ GG+HHA G GFC + D+ L + Q+ +I+ +I D
Sbjct: 116 GTVMTSTLALEQGKALNLTGGYHHAFANFGAGFCLFNDLYLAALNMLQASAINKVLIFDC 175
Query: 64 DAHQ 67
D HQ
Sbjct: 176 DVHQ 179
>gi|374330069|ref|YP_005080253.1| histone deacetylase superfamily protein [Pseudovibrio sp. FO-BEG1]
gi|359342857|gb|AEV36231.1| histone deacetylase superfamily [Pseudovibrio sp. FO-BEG1]
Length = 279
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 124/242 (51%), Gaps = 15/242 (6%)
Query: 165 EPQEVSEEQLLIAHTEKYL-KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGG 223
EP +S + LL H +Y+ + L + A + E+ + F +C GG
Sbjct: 25 EPAPISRDDLLRVHAREYVDQVLSCTVPHAIVREIGFPMTESVSFRAQCA-------TGG 77
Query: 224 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 283
+L LAL G + N GG HHA +G GFC + D+++ V+ + + + +I+DLD
Sbjct: 78 SLLTAMLALEHGVACNTAGGSHHARIAQGAGFCVFNDVAVAVRAVQAMRMVRRVLIIDLD 137
Query: 284 AHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCR-----IELAPYTEDQHYLEKIEAGL 338
HQG+G F ++T +F + + S+ +R + + L ED YL +E L
Sbjct: 138 VHQGDGTADIFAHDTSVFTLS--LHSEKNYPVRKKSSTLDVPLEDGMEDDEYLSILEDTL 195
Query: 339 ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSG 398
+R L +F D++ +NAG D +D LG LA+S +G+ +R+ELVF R +P+ + G
Sbjct: 196 KRVLTTFKADLVFFNAGVDPHHDDRLGRLALSDEGLRKREELVFKLVRNEGLPLAGVLGG 255
Query: 399 GY 400
GY
Sbjct: 256 GY 257
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L LAL G + N GG HHA +G GFC + D+++ V+ + + + +I+DL
Sbjct: 77 GSLLTAMLALEHGVACNTAGGSHHARIAQGAGFCVFNDVAVAVRAVQAMRMVRRVLIIDL 136
Query: 64 DAHQ 67
D HQ
Sbjct: 137 DVHQ 140
>gi|336311111|ref|ZP_08566078.1| histone deacetylase/AcuC/AphA family protein [Shewanella sp. HN-41]
gi|335865327|gb|EGM70353.1| histone deacetylase/AcuC/AphA family protein [Shewanella sp. HN-41]
Length = 302
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 144/303 (47%), Gaps = 27/303 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY Y+ L H F + K+ ++ YL+ + + T P ++
Sbjct: 5 PLVYHASYSK--LALPSHHKFPTTKYANLRQYLF--------DNQLATPAQFHAPIAMTA 54
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGF 229
+ ++ H ++Y++ I+ P +A+ + + + + V GT
Sbjct: 55 QDVMQVHQKEYVEQF--------ITGTLPTMALRRIGFPWSEALVERTLHSVAGTTLTAS 106
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LA+ G S+++ GG+HHA G G+C + D+ + + + +K + + +I D D HQG+G
Sbjct: 107 LAIEHGISLHLTGGYHHAHYDFGSGYCIFNDLIIAAQKVIAAKQLHSVLIFDCDVHQGDG 166
Query: 290 YEKDFMNETRIFIMETCITSKA-----KEAIRCRIELAPYTEDQHYLEKIEAGLERSLRS 344
++ I+ I K K++ IEL+ +D+ Y+E +E L +R
Sbjct: 167 SAT--LSHRHNGIISCSIHCKENFPSRKQSSHYDIELSKGVDDKAYIETVEQTLALLIRI 224
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT 404
PD+I+Y+AG D+ ND LGLL IS +G+ RRD V A+ +PI + GGY +
Sbjct: 225 HQPDLILYDAGVDIHQNDDLGLLNISQEGLFRRDLTVLSIAKSANIPIAAVIGGGYSRDA 284
Query: 405 ARI 407
++
Sbjct: 285 LQL 287
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LA+ G S+++ GG+HHA G G+C + D+ + + + +K + + +I D
Sbjct: 100 GTTLTASLAIEHGISLHLTGGYHHAHYDFGSGYCIFNDLIIAAQKVIAAKQLHSVLIFDC 159
Query: 64 DAHQ 67
D HQ
Sbjct: 160 DVHQ 163
>gi|332878787|ref|ZP_08446502.1| histone deacetylase family protein [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332683138|gb|EGJ56020.1| histone deacetylase family protein [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 276
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 117/247 (47%), Gaps = 10/247 (4%)
Query: 166 PQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTL 225
P +VS E L +AHT Y+ K+ + E P+ V N Q+ R + V GT+
Sbjct: 25 PSKVSLETLCLAHTPDYVH--KFVHLQLSHKEALPIGFVQN---QQLVDRELTL-VQGTI 78
Query: 226 EAGFLALRRG-WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDA 284
EA ALR NI GG HHA +G GFC D ++ L ++ +I+DLD
Sbjct: 79 EAALWALRTAEVGFNIAGGTHHAFSDRGEGFCMLNDQAVAAAYLLAHTAVRKVLIIDLDV 138
Query: 285 HQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERS 341
HQGNG + F ++ R+F KE I L T D YL + + L
Sbjct: 139 HQGNGTAEIFRHDPRVFTFSMHAEGNYPFVKEQSDRDIALPTGTTDAAYLSVLTSVLPEI 198
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYL 401
+ + PD + Y +G DVL +D LG L++S QG RD VF R+ +P+ GGY
Sbjct: 199 ITAHQPDFVFYQSGVDVLSSDKLGKLSLSVQGCADRDRFVFNLCRQHHLPVQCSMGGGYS 258
Query: 402 KQTARII 408
Q + I+
Sbjct: 259 PQLSAIL 265
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRG-WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 62
GT+EA ALR NI GG HHA +G GFC D ++ L ++ +I+D
Sbjct: 76 GTIEAALWALRTAEVGFNIAGGTHHAFSDRGEGFCMLNDQAVAAAYLLAHTAVRKVLIID 135
Query: 63 LDAHQ 67
LD HQ
Sbjct: 136 LDVHQ 140
>gi|109897487|ref|YP_660742.1| histone deacetylase superfamily protein [Pseudoalteromonas
atlantica T6c]
gi|109699768|gb|ABG39688.1| histone deacetylase superfamily [Pseudoalteromonas atlantica T6c]
Length = 306
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 142/303 (46%), Gaps = 26/303 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+V+ P Y+ L H F +K++ I++ L + Q +P ++
Sbjct: 10 PLVFHPIYSQ--LDLPFKHRFPIEKYQAIYDKLI---------GLGVPQGQFHQPHALTP 58
Query: 172 EQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
QL ++ Y+ L + + A+ + P + ++ R + VGGT+ L
Sbjct: 59 SQLNRVYSPDYVNDLTRGMLDPKAMRRI----GFP--WSEQLIARSLTA-VGGTVLTSSL 111
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G ++N+ GG+HHA G GFC + D+ L + Q+ +I +I D D HQG+G
Sbjct: 112 ALEHGKALNLTGGYHHAFANFGSGFCLFNDLYLAALNVLQTPTIRKVLIFDCDVHQGDGT 171
Query: 291 EKDFMNETRIFIMETCITSKA-----KEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
K N R+F + I S+ K+ LA T D YL ++ L ++ F
Sbjct: 172 AKLASNNKRVFTVS--IHSEKNFPHRKQVSDLDFPLAKGTTDDEYLAIVKRALSQAFTEF 229
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PD ++Y+AG D+ +ND LG L IS G+ RD +VF + VP+ + GGY +
Sbjct: 230 QPDAVIYDAGVDIHINDDLGHLHISTPGVYARDCMVFEACEKYGVPVAAVIGGGYQRDID 289
Query: 406 RII 408
++
Sbjct: 290 ALV 292
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G ++N+ GG+HHA G GFC + D+ L + Q+ +I +I D
Sbjct: 104 GTVLTSSLALEHGKALNLTGGYHHAFANFGSGFCLFNDLYLAALNVLQTPTIRKVLIFDC 163
Query: 64 DAHQ 67
D HQ
Sbjct: 164 DVHQ 167
>gi|254471722|ref|ZP_05085123.1| histone deacetylase family protein [Pseudovibrio sp. JE062]
gi|211958924|gb|EEA94123.1| histone deacetylase family protein [Pseudovibrio sp. JE062]
Length = 279
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 119/240 (49%), Gaps = 11/240 (4%)
Query: 165 EPQEVSEEQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGG 223
EP +S + LL H +Y+ L S A E+ + F +C GG
Sbjct: 25 EPAPISRDDLLRVHAREYVDQVLSCSVPHAIAREIGFPMTESVSFRAQCA-------TGG 77
Query: 224 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 283
+L LAL G + N GG HHA +G GFC + D+++ V+ + + + +I+DLD
Sbjct: 78 SLLTAMLALEHGVACNTAGGSHHARIAQGAGFCVFNDVAVAVRAVQAMRMVRRVLIIDLD 137
Query: 284 AHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLER 340
HQG+G F ++T +F + K+A + L ED YL +E L+R
Sbjct: 138 VHQGDGTADIFAHDTSVFTLSLHSEKNYPVRKKASTLDVPLEDGMEDDEYLSILEDTLKR 197
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
L +F D++ +NAG D +D LG LA+S +G+ +R+ELVF R +P+ + GGY
Sbjct: 198 VLTTFKADLVFFNAGVDPHHDDRLGRLALSDEGLRKREELVFKLVRNEGLPLAGVLGGGY 257
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L LAL G + N GG HHA +G GFC + D+++ V+ + + + +I+DL
Sbjct: 77 GSLLTAMLALEHGVACNTAGGSHHARIAQGAGFCVFNDVAVAVRAVQAMRMVRRVLIIDL 136
Query: 64 DAHQ 67
D HQ
Sbjct: 137 DVHQ 140
>gi|410644684|ref|ZP_11355159.1| histone deacetylase family protein [Glaciecola agarilytica NO2]
gi|410135692|dbj|GAC03558.1| histone deacetylase family protein [Glaciecola agarilytica NO2]
Length = 300
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 102/192 (53%), Gaps = 5/192 (2%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
V GT+ LAL +G ++N+ GG+HHA G GFC + D+ L + Q+ +I+ +I
Sbjct: 96 VAGTVMTSNLALEQGKALNLTGGYHHAFANFGAGFCLFNDLYLAALNMLQASAINKVLIF 155
Query: 281 DLDAHQGNGYEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEA 336
D D HQG+G K N ++F + E + K+ LA D YL +E
Sbjct: 156 DCDVHQGDGTAKLASNNPKVFTVSLHGEKNFPHR-KQVSDLDFPLAKGATDDEYLTVVER 214
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
L ++ +F PD ++Y+AG D+ +ND LG L IS G+ RD +VF ++ VP+ +
Sbjct: 215 ALHQAFSTFQPDAVIYDAGVDIHVNDDLGHLHISTPGVYARDCMVFDACSKQGVPVAAVI 274
Query: 397 SGGYLKQTARII 408
GGY + + ++
Sbjct: 275 GGGYQRDISALV 286
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL +G ++N+ GG+HHA G GFC + D+ L + Q+ +I+ +I D
Sbjct: 98 GTVMTSNLALEQGKALNLTGGYHHAFANFGAGFCLFNDLYLAALNMLQASAINKVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|319953397|ref|YP_004164664.1| histone deacetylase [Cellulophaga algicola DSM 14237]
gi|319422057|gb|ADV49166.1| Histone deacetylase [Cellulophaga algicola DSM 14237]
Length = 300
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 121/252 (48%), Gaps = 9/252 (3%)
Query: 160 QDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRY 219
++N EP+ +++ +L H +Y L N+ + + P + + + R
Sbjct: 40 KENFFEPEIPNDKYILAVHDAEYYYDL---LNIKIDQKAARKIGFP---LSEDLIERERI 93
Query: 220 HVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMI 279
GGT++ A+ G ++N+ GG HHA G FC D S+ + L K + +I
Sbjct: 94 ITGGTIKGCEFAIENGVAMNLAGGTHHAYSDHGEAFCMLNDQSIGARYLQAKKLAAQILI 153
Query: 280 VDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEA 336
VDLD HQGNG + F N+T +F S KEA I L TED+ YL ++
Sbjct: 154 VDLDVHQGNGTAEIFQNDTSVFTFSMHGESNYPFRKEASDLDIALKKGTEDKEYLSLLKK 213
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
L + + PD I Y +G DVL +D LG LA++ +G +RDE V + ++P+
Sbjct: 214 TLPALITAVKPDFIFYLSGVDVLASDKLGTLALTLEGCKKRDEFVLKTCLDYKIPVQCSM 273
Query: 397 SGGYLKQTARII 408
GGY + II
Sbjct: 274 GGGYSRDIKIII 285
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++ A+ G ++N+ GG HHA G FC D S+ + L K + +IVDL
Sbjct: 97 GTIKGCEFAIENGVAMNLAGGTHHAYSDHGEAFCMLNDQSIGARYLQAKKLAAQILIVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|381205004|ref|ZP_09912075.1| histone deacetylase/AcuC/AphA family protein [SAR324 cluster
bacterium JCVI-SC AAA005]
Length = 319
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 137/295 (46%), Gaps = 21/295 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P+Y++ + E P ++ ++ + E K ++ +P+ S
Sbjct: 6 PLIYHPDYDIPEWNEEHRFPMSK----------FRRLYKIISEEKSLSPVEFHQPEVAST 55
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+ L HT Y++ ++ + +A + +P + + R + +GGT+ L
Sbjct: 56 DHLQAVHTLDYIQQFMENRLDKSAARRI----GLP--WTEGLARRTITA-IGGTILTLQL 108
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL+ G + N+GGG HHA G GFC + D S+ ++L Q S+ +IVDLD HQG+G
Sbjct: 109 ALKHGLACNLGGGTHHAFPDFGSGFCIFNDASVAARMLLQEGSVQQILIVDLDVHQGDGT 168
Query: 291 EKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+E +F S K+ + L +D YL + A L L P
Sbjct: 169 AFIHQDEVAVFTFSMHCQSNFPFRKQHSDLDVPLPENLDDDSYLRILRANLPELLDRTEP 228
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402
D+++YNAG D +DPLG L ++ +G+ RD+ V P+ + GGY K
Sbjct: 229 DLVIYNAGVDPFKDDPLGKLNLTWEGLQARDQYVMECCLNVGAPVGCVIGGGYSK 283
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL+ G + N+GGG HHA G GFC + D S+ ++L Q S+ +IVDL
Sbjct: 101 GTILTLQLALKHGLACNLGGGTHHAFPDFGSGFCIFNDASVAARMLLQEGSVQQILIVDL 160
Query: 64 DAHQ 67
D HQ
Sbjct: 161 DVHQ 164
>gi|297567404|ref|YP_003686376.1| histone deacetylase [Meiothermus silvanus DSM 9946]
gi|296851853|gb|ADH64868.1| Histone deacetylase [Meiothermus silvanus DSM 9946]
Length = 299
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 131/283 (46%), Gaps = 25/283 (8%)
Query: 122 HFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEK 181
H +L HPF K+ + L + + + E L +AH
Sbjct: 11 HVLELPDHHPFPRYKYGGVAEVLRGEV-------------QVRPAPALPWEALALAHEPN 57
Query: 182 YLKSLKWSFNVAAISEVCPL-VAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINI 240
YL L+ +S L V +P + + R + + GGTL A AL RG +N+
Sbjct: 58 YLARLRSQ----GLSRQESLRVGLP--WSESLLTRAL-HAAGGTLMASRDALERGLGMNL 110
Query: 241 GGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRI 300
GG HHA + G+ + D+++ + L A++VDLDAHQGNG F N++ +
Sbjct: 111 AGGTHHAYPDRAEGYSLFNDVAVALANLRAEGFGGKALVVDLDAHQGNGTAVFFQNDSYV 170
Query: 301 FIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTD 357
F + KE + L T DQ YLE +E L + PD++ +NAG D
Sbjct: 171 FTLSLHGERNYPLRKEKSDLDVGLPDGTADQAYLEALEQALSTGF-ACKPDLVFFNAGVD 229
Query: 358 VLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
VL D G L++S +G+ RD +VF + R+ +P+V++ GGY
Sbjct: 230 VLAGDRFGRLSLSLEGLAERDRMVFSRVRQAGIPLVIVMGGGY 272
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL A AL RG +N+ GG HHA + G+ + D+++ + L A++VDL
Sbjct: 93 GTLMASRDALERGLGMNLAGGTHHAYPDRAEGYSLFNDVAVALANLRAEGFGGKALVVDL 152
Query: 64 DAHQ-------FSDYYFPSAHSIKRKRKVEFLKERKALE 95
DAHQ F + + S+ +R KE+ L+
Sbjct: 153 DAHQGNGTAVFFQNDSYVFTLSLHGERNYPLRKEKSDLD 191
>gi|218295840|ref|ZP_03496620.1| histone deacetylase superfamily [Thermus aquaticus Y51MC23]
gi|218243578|gb|EED10106.1| histone deacetylase superfamily [Thermus aquaticus Y51MC23]
Length = 293
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 118/241 (48%), Gaps = 10/241 (4%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
I+ EV E L +AH YL+ L F + + +P L+ + G
Sbjct: 37 ILPAPEVPREALFLAHEASYLEKL---FREGLSRQESLRLGLP---FGPGLLKRALHAAG 90
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
GTL A ALR G +N+ GG HHA + G+ + D+++ V+ L ++VDL
Sbjct: 91 GTLMAAEDALRTGLGLNLAGGTHHAFPDRAEGYSLFNDVAVAVRWLRARGFWGRVLVVDL 150
Query: 283 DAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLE 339
DAHQGNG F ++ ++ + KE + L D+ YL ++ LE
Sbjct: 151 DAHQGNGTAFFFRDDPTVYTLSLHGERNYPLKKEKGDLDVGLPDGVGDEAYLRALDEALE 210
Query: 340 RSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGG 399
++ +F P ++ YNAG DVL D G LA+SP+G+ RRD VF R VP+V++ GG
Sbjct: 211 KA-EAFRPHLVFYNAGVDVLKGDRFGRLALSPEGVKRRDARVFRLVRALGVPLVVVMGGG 269
Query: 400 Y 400
Y
Sbjct: 270 Y 270
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL A ALR G +N+ GG HHA + G+ + D+++ V+ L ++VDL
Sbjct: 91 GTLMAAEDALRTGLGLNLAGGTHHAFPDRAEGYSLFNDVAVAVRWLRARGFWGRVLVVDL 150
Query: 64 DAHQFSDYYF 73
DAHQ + F
Sbjct: 151 DAHQGNGTAF 160
>gi|392535978|ref|ZP_10283115.1| histone deacetylase [Pseudoalteromonas arctica A 37-1-2]
Length = 276
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 125/268 (46%), Gaps = 14/268 (5%)
Query: 145 WKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAV 204
+ H++ ++ + I DN++EP + E L + H E Y+ L +N + + +
Sbjct: 4 FAHLYQHVAKLGLIG-DNLVEPILGTPEPLELIHCENYIHDL---WNNRLDEKAMRRIGL 59
Query: 205 P--NYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADIS 262
P + + + P GTL+ LAL+ G + ++ GG HHA G G+C D++
Sbjct: 60 PWSKELMARTFTAPQ-----GTLQTARLALKHGIACHLAGGTHHAHTDFGSGYCMVNDLA 114
Query: 263 LLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRI 319
+ L +S ++ +I DLD HQG+G ++ + K A I
Sbjct: 115 FTTQTLIESGEVTNVLIFDLDVHQGDGTAAMLQHQAYAYTCSIHCEKNFPFRKSASDLDI 174
Query: 320 ELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDE 379
LA +D YL ++ L L+ P +++Y+AG D+ D LG L IS GI++RD
Sbjct: 175 GLADNMKDDEYLAVVDDTLSYLLKELNPSLVLYDAGVDIWQGDGLGKLDISWDGIVKRDH 234
Query: 380 LVFMKARERRVPIVMLTSGGYLKQTARI 407
LV + E P+ + GGY K R+
Sbjct: 235 LVLKRCLEHNTPVATVIGGGYDKDHLRL 262
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL+ LAL+ G + ++ GG HHA G G+C D++ + L +S ++ +I DL
Sbjct: 75 GTLQTARLALKHGIACHLAGGTHHAHTDFGSGYCMVNDLAFTTQTLIESGEVTNVLIFDL 134
Query: 64 DAHQ 67
D HQ
Sbjct: 135 DVHQ 138
>gi|108759310|ref|YP_629630.1| histone deacetylase [Myxococcus xanthus DK 1622]
gi|108463190|gb|ABF88375.1| histone deacetylase family protein [Myxococcus xanthus DK 1622]
Length = 299
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 121/267 (45%), Gaps = 9/267 (3%)
Query: 145 WKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAV 204
++ + L+E +T +++ E + L HT +YL +L A
Sbjct: 24 YRLLREALLERGVLTPESLTESTPCPRQDLARVHTPRYLDALSQGTLTDAEQRRLGFPWS 83
Query: 205 PNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLL 264
P +R V GTL+A AL+ G N+ GG HH G GFC + DI++
Sbjct: 84 PEL------MRRFSAAVAGTLDAARAALQDGIGGNLSGGTHHGFPDHGEGFCVFNDIAVA 137
Query: 265 VKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIEL 321
+++L S+ I A++VDLD HQGNG F + +F + K+ + L
Sbjct: 138 IRVLQASRDIRRAVVVDLDVHQGNGTAAVFTGDDSVFTFSMHGENNFPFRKQPSHLDVGL 197
Query: 322 APYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV 381
T D YL+ + L L S I+ + AG D L D LG L+++ G+ RD LV
Sbjct: 198 PDGTGDAAYLDALALHLPEVLDSAGACILFFQAGVDPLTEDALGRLSLTHAGLRARDRLV 257
Query: 382 FMKARERRVPIVMLTSGGYLKQTARII 408
AR+R +P V+ GGY K + I
Sbjct: 258 LEAARQRGIPAVLTLGGGYAKPLSATI 284
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL+A AL+ G N+ GG HH G GFC + DI++ +++L S+ I A++VDL
Sbjct: 96 GTLDAARAALQDGIGGNLSGGTHHGFPDHGEGFCVFNDIAVAIRVLQASRDIRRAVVVDL 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|428304940|ref|YP_007141765.1| histone deacetylase [Crinalium epipsammum PCC 9333]
gi|428246475|gb|AFZ12255.1| Histone deacetylase [Crinalium epipsammum PCC 9333]
Length = 305
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 130/292 (44%), Gaps = 20/292 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY P Y V L + H F K+K ++ L K + P E
Sbjct: 4 PIVYHPNYVV---PLPEGHRFPMPKFKKLYELLIKD--------GVAEKTQFYSPVRPPE 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ + + HT +Y+++ A L P + C VGGT+ LA
Sbjct: 53 DWIELVHTPEYVQAYCQGTLDAKAQRRIGLPWSPALANRTCVA------VGGTILTARLA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G + N GG HHA G GFC + D+++ ++L Q + +IVDLD HQG+G
Sbjct: 107 LTYGLACNTAGGTHHAFPNYGSGFCIFNDLAVTARVLQQLGLVKKILIVDLDVHQGDGTA 166
Query: 292 KDFMNETRIFIMET-CITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
F ++ +F C + K+ + LA ED YL+ ++ L L PD
Sbjct: 167 FIFQDDKSVFTFSMHCEVNFPGTKQTSDLDVPLAQGMEDDEYLQTLDKYLPDLLTEVKPD 226
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
+++Y+AG D L D LG L+++ GI RR+ V +R P+ + GGY
Sbjct: 227 LVLYDAGVDPHLGDRLGKLSLTDTGIYRREMQVLTTCISQRYPVACVIGGGY 278
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G + N GG HHA G GFC + D+++ ++L Q + +IVDL
Sbjct: 98 GTILTARLALTYGLACNTAGGTHHAFPNYGSGFCIFNDLAVTARVLQQLGLVKKILIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|83649181|ref|YP_437616.1| deacetylase [Hahella chejuensis KCTC 2396]
gi|83637224|gb|ABC33191.1| Deacetylases, including yeast histone deacetylase and acetoin
utilization protein [Hahella chejuensis KCTC 2396]
Length = 306
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 144/312 (46%), Gaps = 42/312 (13%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY PEY+ ++ H F +K++ + +L +T N+ P+ ++
Sbjct: 5 PLVYHPEYSP---EIPAGHRFPMEKFRLLAEFLRA--------EGVLTDANLFTPEAATQ 53
Query: 172 EQLLIAHTEKYLKSLKWS-FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
E + +AH Y++ + + + ++ +P + + R R VGGTL L
Sbjct: 54 EDIALAHCADYVRDFRHGELSAKHMRQI----GLP--WSEGVCTRTFRA-VGGTLLTARL 106
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL+ G ++ GG HHA G GFC + D+++ ++L + S +I+D D HQG+G
Sbjct: 107 ALKYGLVAHLAGGTHHAHYDHGSGFCVFNDLAVAARVLVRGGEASRVLIIDCDVHQGDGT 166
Query: 291 EKDFMNETRIFIMETCITSKAKEAIRCR-------------IELAPYTEDQHYLEKIEAG 337
+ ++ IF TC + CR IEL ++ + Y++ +E
Sbjct: 167 ARILTDDPDIF---TC-------SFHCRQNFPYRKAHSDFDIELDRGSDGRAYMQTMEHW 216
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L PD ++Y+AG DV +D LG L + I RDE V + ER VP+ +
Sbjct: 217 LPYIFDLTQPDFVLYDAGVDVHDDDVLGHLHLKDADIAERDEYVIRQCLERGVPVACVIG 276
Query: 398 GGYLKQTARIIA 409
GGY K R+ A
Sbjct: 277 GGYDKDRKRLAA 288
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL LAL+ G ++ GG HHA G GFC + D+++ ++L + S +I+D
Sbjct: 99 GTLLTARLALKYGLVAHLAGGTHHAHYDHGSGFCVFNDLAVAARVLVRGGEASRVLIIDC 158
Query: 64 DAHQ 67
D HQ
Sbjct: 159 DVHQ 162
>gi|410642129|ref|ZP_11352647.1| histone deacetylase 11 [Glaciecola chathamensis S18K6]
gi|410138446|dbj|GAC10834.1| histone deacetylase 11 [Glaciecola chathamensis S18K6]
Length = 318
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 102/192 (53%), Gaps = 5/192 (2%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
V GT+ LAL +G ++N+ GG+HHA G GFC + D+ L + Q+ +I+ +I
Sbjct: 114 VAGTVMTSTLALEQGKALNLTGGYHHAFANFGAGFCLFNDLYLAALNMLQASAINKVLIF 173
Query: 281 DLDAHQGNGYEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEA 336
D D HQG+G K N ++F + E + K+ LA T D YL +E
Sbjct: 174 DCDVHQGDGTAKLASNNPKVFTVSLHGEKNFPHR-KQVSDLDFPLAKGTTDDEYLTVVER 232
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
L ++ + PD ++Y+AG D+ +ND LG L IS G+ RD +VF ++ VP+ +
Sbjct: 233 ALHQAFSTVQPDAVIYDAGVDIHVNDDLGHLHISTPGVYARDCMVFDACSKQGVPVAAVI 292
Query: 397 SGGYLKQTARII 408
GGY + + ++
Sbjct: 293 GGGYQRDISALV 304
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL +G ++N+ GG+HHA G GFC + D+ L + Q+ +I+ +I D
Sbjct: 116 GTVMTSTLALEQGKALNLTGGYHHAFANFGAGFCLFNDLYLAALNMLQASAINKVLIFDC 175
Query: 64 DAHQ 67
D HQ
Sbjct: 176 DVHQ 179
>gi|359442098|ref|ZP_09231977.1| histone deacetylase family protein [Pseudoalteromonas sp. BSi20429]
gi|358036038|dbj|GAA68226.1| histone deacetylase family protein [Pseudoalteromonas sp. BSi20429]
Length = 297
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 122/251 (48%), Gaps = 17/251 (6%)
Query: 165 EPQEVSEEQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGG 223
EP++V+ QL + H+++Y+ L + AI ++ P + Q+ R + +GG
Sbjct: 44 EPKKVTVSQLALCHSQRYIDDFLNGTLGDKAIKKM----GFP--YSQQLVERTL-LSIGG 96
Query: 224 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 283
+++A A + N+ GG+HH+ G GFC + D+++ L ++ T +I D D
Sbjct: 97 SIQAAEAAFSHDLTFNLSGGYHHSHSDFGSGFCIFNDLAIAAAHLINTEQADTVLIFDCD 156
Query: 284 AHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCRIE------LAPYTEDQHYLEKIEAG 337
HQG+G + N +I TC + R + E L T D YL ++
Sbjct: 157 VHQGDGTAQITQNHNQII---TCSIHCEQNFPRNKQESTYDFALPAKTADDEYLATLKQA 213
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L+ +R PDII+YNAG D+ D LGL IS G+ RD V ++ + P++
Sbjct: 214 LDFCVRIHNPDIILYNAGADIYTKDELGLFNISLNGVYERDLFVLNFCKQHQTPLMCALG 273
Query: 398 GGYLKQTARII 408
GGY + + +I
Sbjct: 274 GGYQRNLSSLI 284
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+++A A + N+ GG+HH+ G GFC + D+++ L ++ T +I D
Sbjct: 96 GSIQAAEAAFSHDLTFNLSGGYHHSHSDFGSGFCIFNDLAIAAAHLINTEQADTVLIFDC 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|392554229|ref|ZP_10301366.1| histone deacetylase/AcuC/AphA family protein [Pseudoalteromonas
undina NCIMB 2128]
Length = 295
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 138/314 (43%), Gaps = 50/314 (15%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
+ Y P Y+ L + H F KK++ + KH L +FI+ P ++
Sbjct: 3 LFYHPLYSA--LTLPERHRFPIKKYQQL-----KHEVERLGYTRFIS------PSPATKA 49
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
QL + H+ Y+ N + + + P+ + K R + Y VG +++A AL
Sbjct: 50 QLSLCHSSDYIADF---LNGSLTDKAVKKMGFPHSY--KLVERTL-YSVGASIQAAETAL 103
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
G + N+ GG+HHA G GFC + D+++ L ++ T +I D D HQG+G +
Sbjct: 104 ESGLAANLSGGYHHAYSNYGSGFCIFNDLAIAAAHLISTEQADTVLIFDCDVHQGDGTAQ 163
Query: 293 DFMNETRIFIMETCITSKAKEAIRCRIE-----------------LAPYTEDQHYLEKIE 335
IT + ++ I C I L T D YL ++
Sbjct: 164 --------------ITQQHEQIISCSIHCEQNFPRQKQYSNYDFGLPANTTDAEYLTTLD 209
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
LE +R P II+YNAG D+ D LGL +S G+ +RD V ++R +P++
Sbjct: 210 QALELCVRLHQPYIILYNAGADIYTKDELGLFDVSLAGVYKRDFAVLNFCKQRNIPLMCA 269
Query: 396 TSGGYLKQTARIIA 409
GGY + +++
Sbjct: 270 LGGGYQRNINNLVS 283
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
+++A AL G + N+ GG+HHA G GFC + D+++ L ++ T +I D
Sbjct: 94 ASIQAAETALESGLAANLSGGYHHAYSNYGSGFCIFNDLAIAAAHLISTEQADTVLIFDC 153
Query: 64 DAHQ 67
D HQ
Sbjct: 154 DVHQ 157
>gi|153000143|ref|YP_001365824.1| histone deacetylase superfamily protein [Shewanella baltica OS185]
gi|160874765|ref|YP_001554081.1| histone deacetylase superfamily protein [Shewanella baltica OS195]
gi|378708018|ref|YP_005272912.1| histone deacetylase superfamily protein [Shewanella baltica OS678]
gi|151364761|gb|ABS07761.1| histone deacetylase superfamily [Shewanella baltica OS185]
gi|160860287|gb|ABX48821.1| histone deacetylase superfamily [Shewanella baltica OS195]
gi|315267007|gb|ADT93860.1| histone deacetylase superfamily [Shewanella baltica OS678]
Length = 302
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 140/302 (46%), Gaps = 25/302 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY Y+ L H F + K+ ++ YL +E + T P ++
Sbjct: 5 PLVYHASYSK--LALPPHHRFPTTKYANLRQYL--------LENQLATPAQFHTPTAMTA 54
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+ ++ H +Y++ + + AA+ + + + + + V GT L
Sbjct: 55 QDVMQVHQREYVEQFIAGTLPTAALRRI-------GFPWSEALVERTLHSVAGTTLTASL 107
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
A+ +G +++ GG+HHA G G+C + D+ L + S+ + +I D D HQG+G
Sbjct: 108 AINQGIGLHLTGGYHHAHYDFGSGYCIFNDLILAAQNAIASQQVHKVLIFDCDVHQGDGS 167
Query: 291 EKDFMNETRIFIMETCITSKA-----KEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
+++ I+ I K K+ IEL ++D YLE +E L +R
Sbjct: 168 AT--LSQRHQGIISCSIHCKENFPSRKQHSHHDIELTKGSDDNLYLETVEQTLALLIRIH 225
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PD+I+Y+AG D+ ND LGLL IS +G+ RRD V A+ +PI + GGY +
Sbjct: 226 QPDLILYDAGVDIHQNDDLGLLNISQEGLFRRDLTVLSMAKSENIPIAAVIGGGYSRDAL 285
Query: 406 RI 407
++
Sbjct: 286 QL 287
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LA+ +G +++ GG+HHA G G+C + D+ L + S+ + +I D
Sbjct: 100 GTTLTASLAINQGIGLHLTGGYHHAHYDFGSGYCIFNDLILAAQNAIASQQVHKVLIFDC 159
Query: 64 DAHQ 67
D HQ
Sbjct: 160 DVHQ 163
>gi|410632681|ref|ZP_11343334.1| histone deacetylase family protein [Glaciecola arctica BSs20135]
gi|410147760|dbj|GAC20201.1| histone deacetylase family protein [Glaciecola arctica BSs20135]
Length = 298
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 142/303 (46%), Gaps = 26/303 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+V+ P Y+ L H F +K++ I + L + +T + +P VS
Sbjct: 3 PLVFHPIYSQ--LDLAVRHRFPIEKYQGIRDRLAE---------LGVTDKSFQQPMPVSP 51
Query: 172 EQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAG 228
+ L +Y++ L + + A+ + P +Q+ VGGT+
Sbjct: 52 QDLRQVFNPQYIQQLVSGTLDPKAMRRI----GFPWSEQLIQRSLTA-----VGGTVLTA 102
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
LAL+ G ++N+ GG+HHA G GFC + D+ L + Q +I +I D D HQG+
Sbjct: 103 ELALQHGKALNLTGGYHHAFANYGSGFCLFNDLYLAALTMLQKPNIDKVLIFDCDVHQGD 162
Query: 289 GYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
G K + ++F + K+ LA T D YLE ++ L+ ++ S
Sbjct: 163 GTAKLAESNAQVFTLSIHGEKNFPHRKQVSDLDFNLAKGTTDCEYLETVDCALQLAVNSC 222
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PD ++Y+AG D+ ++D LG L +S G+ +RD LVF + + +PI + GGY +
Sbjct: 223 QPDAVIYDAGVDIHIDDDLGHLNVSTLGVYQRDCLVFDTCQRKGLPIAAVIGGGYQRDID 282
Query: 406 RII 408
++
Sbjct: 283 ALV 285
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL+ G ++N+ GG+HHA G GFC + D+ L + Q +I +I D
Sbjct: 97 GTVLTAELALQHGKALNLTGGYHHAFANYGSGFCLFNDLYLAALTMLQKPNIDKVLIFDC 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|254456264|ref|ZP_05069693.1| histone deacetylase family protein [Candidatus Pelagibacter sp.
HTCC7211]
gi|207083266|gb|EDZ60692.1| histone deacetylase family protein [Candidatus Pelagibacter sp.
HTCC7211]
Length = 297
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 130/263 (49%), Gaps = 16/263 (6%)
Query: 151 YLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLK-WSFNVAAISEVC-PLVAVPNYF 208
YL+E K + N P S E L AH+E Y+ +K + + I ++ PLV +
Sbjct: 32 YLIEQKVVK--NFFNPVACSFETLNRAHSEDYIHDIKNKTLDKNKIKKIGFPLV---DSV 86
Query: 209 VQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLL 268
VQ+ + GGT+ A LAL G + N GG HHA+ G G+C + D+++ L
Sbjct: 87 VQRSLVA-----TGGTVLASKLALNYGIACNTAGGSHHANYDSGAGYCVFNDVAVAAHYL 141
Query: 269 FQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFI--METCITSKAKEAIR-CRIELAPYT 325
+ +IVDLD HQGNG + F +F M + AK++I +EL
Sbjct: 142 LDKGFANRILIVDLDVHQGNGNSEIFKYNRHVFTFSMHSKTNYPAKKSISDLDVELEDNL 201
Query: 326 EDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKA 385
ED Y++ ++ L L + D + Y AG D+ ND LG L IS +GI RDELV
Sbjct: 202 EDDVYIKTLKFYLNE-LNNENFDFVFYIAGVDIHFNDRLGKLKISDEGIRLRDELVIESF 260
Query: 386 RERRVPIVMLTSGGYLKQTARII 408
+++PI + GGY K +++
Sbjct: 261 SSKKIPICGVLGGGYNKDFNKLV 283
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LAL G + N GG HHA+ G G+C + D+++ L + +IVDL
Sbjct: 96 GTVLASKLALNYGIACNTAGGSHHANYDSGAGYCVFNDVAVAAHYLLDKGFANRILIVDL 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|24373380|ref|NP_717423.1| histone deacetylase superfamily protein [Shewanella oneidensis
MR-1]
gi|24347646|gb|AAN54867.1| histone deacetylase superfamily protein [Shewanella oneidensis
MR-1]
Length = 304
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 142/302 (47%), Gaps = 25/302 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY Y+ L H F + K+ H++ YL ++ + T P ++
Sbjct: 3 PLVYHASYSK--LALPIHHRFPTTKYAHLYQYL--------LDNQLATPTQFHTPTPMTA 52
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
E+++ H Y++ + + +A+ + + + + + + GT L
Sbjct: 53 EEIMQVHHRDYVEQFIDGTLATSALRRI-------GFPWSEALVERTLHSLAGTSLTAAL 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL+ G ++++ GG+HHA G G+C + D+ + + L + + +I D D HQG+G
Sbjct: 106 ALQTGIALHLTGGYHHAHYEFGSGYCIFNDLIIAARKLIIEQQLHKILIFDCDVHQGDGT 165
Query: 291 EKDFMNETRIFIMETCITSKA-----KEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
+++ I+ I K K+ IEL T+D YL+ +E LE +R
Sbjct: 166 AT--LSQLHQGIISCSIHCKDNFPSRKQHSHYDIELVKGTDDSAYLDTVEQTLELLIRLH 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PD+I+Y+AG D+ +D LG L IS QG+ +RD V AR +P+ + GGY +
Sbjct: 224 QPDLILYDAGVDIHQDDDLGHLQISQQGLYQRDVTVLSMARAANIPVAAVIGGGYSRDAL 283
Query: 406 RI 407
++
Sbjct: 284 QL 285
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LAL+ G ++++ GG+HHA G G+C + D+ + + L + + +I D
Sbjct: 98 GTSLTAALALQTGIALHLTGGYHHAHYEFGSGYCIFNDLIIAARKLIIEQQLHKILIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|159469207|ref|XP_001692759.1| histone deacetylase [Chlamydomonas reinhardtii]
gi|158278012|gb|EDP03778.1| histone deacetylase [Chlamydomonas reinhardtii]
Length = 278
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 133/297 (44%), Gaps = 28/297 (9%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNI-IEPQEVS 170
P+VY P+Y+ P S +++ I+ ++E I + P+
Sbjct: 2 PVVYHPDYSAPVMPPGHRFPMASTA-------VFRRIYELVLEEGIAAPHQIHVPPRLPP 54
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRP----MRYHVGGTLE 226
+E+LL+ H YL F+ + E V++ P + V GTL
Sbjct: 55 DEELLLVHDPDYLAL----FSSGRLDE---------ERVRRIGFGPAVRRTKAEVAGTLL 101
Query: 227 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 286
LAL G ++N GG HHA + G G+C D+++ ++L ++ +++DLD HQ
Sbjct: 102 TARLALSGGLAVNTAGGTHHAFPSHGSGYCILNDLAVTAEVLLAEGAVRRVLVLDLDVHQ 161
Query: 287 GNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
G+G F + +F + S K+ I L T D YL ++ L LR
Sbjct: 162 GDGTAFIFRDRPDVFTLSVHAASNFPARKQRSTLDIALPDGTPDAVYLARVAEILPAVLR 221
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
F PD+++Y+AG D ++D LG LA++ G+ RR+ LV VP+ GGY
Sbjct: 222 DFKPDLVLYDAGVDPHVDDALGRLALTDAGLARRERLVLDTCLGWGVPVAGYVGGGY 278
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL LAL G ++N GG HHA + G G+C D+++ ++L ++ +++DL
Sbjct: 98 GTLLTARLALSGGLAVNTAGGTHHAFPSHGSGYCILNDLAVTAEVLLAEGAVRRVLVLDL 157
Query: 64 DAHQFSDYYF 73
D HQ F
Sbjct: 158 DVHQGDGTAF 167
>gi|392542891|ref|ZP_10290028.1| histone deacetylase/AcuC/AphA family protein [Pseudoalteromonas
piscicida JCM 20779]
Length = 301
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 137/303 (45%), Gaps = 28/303 (9%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEP-QEVSE 171
+ Y P Y+ L + H F K+K ++ + F AKFI EP Q+++
Sbjct: 2 LYYHPIYSE--LNLPEKHRFPISKYKKLYQRINASKF-----AKFIK-----EPEQKITA 49
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAG 228
+ L + H Y+ + L + + AI ++ P VQ+ + +GG L A
Sbjct: 50 DALQLCHDSNYVDAFLNGTLSEKAIKKM----GFPWSEQLVQRTLIS-----LGGGLTAA 100
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
AL G+ N+ GG+HHA G GFC + D +++ L + + +I D D HQG+
Sbjct: 101 QSALEYGFGANLSGGYHHAHRDFGSGFCIFNDWAVVAATLIAHQRVERVLIFDCDVHQGD 160
Query: 289 GYEKDFMNETRIFIMETCITS---KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
G + I S + K L T+D Y+ + L+ ++R +
Sbjct: 161 GTATIVADRDDIITCSIHCESNFPRVKPQSDLDFALPVNTQDAQYVATVREALQLAVRLY 220
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PDII+YNAG DV D LG ++S QG+ RD +VF A +P+ GGY +
Sbjct: 221 QPDIILYNAGADVYQGDELGHFSVSKQGVRARDSIVFEYAHHLNIPLAFALGGGYQRDVD 280
Query: 406 RII 408
R++
Sbjct: 281 RLV 283
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G L A AL G+ N+ GG+HHA G GFC + D +++ L + + +I D
Sbjct: 95 GGLTAAQSALEYGFGANLSGGYHHAHRDFGSGFCIFNDWAVVAATLIAHQRVERVLIFDC 154
Query: 64 DAHQ 67
D HQ
Sbjct: 155 DVHQ 158
>gi|326674312|ref|XP_001920667.3| PREDICTED: uncharacterized protein SYNPCC7002_A1628-like [Danio
rerio]
Length = 283
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 107/207 (51%), Gaps = 9/207 (4%)
Query: 205 PNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLL 264
P VQ+C RY GGTL AG +AL+RG + + GG HHA + G GFC D+++
Sbjct: 62 PPGLVQRC-----RYETGGTLLAGQIALQRGLACSTAGGTHHAFPSHGSGFCLLNDLAVT 116
Query: 265 VK-LLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIE 320
K L+ + +IVDLD HQG+G F +E +F K+ +
Sbjct: 117 AKHLISEPTPKRKILIVDLDVHQGDGTAFIFKDEPSVFTFSVHCQRNFPLRKQQSDLDVS 176
Query: 321 LAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDEL 380
L TED+ YL +++ L L SF PD+++Y++G D +D LG L ++ +G+ RRD
Sbjct: 177 LEDGTEDREYLSRVQEHLPWLLESFRPDLVLYDSGVDPHWDDELGKLRLTDEGLYRRDLY 236
Query: 381 VFMKARERRVPIVMLTSGGYLKQTARI 407
V + +P+ + GGY + R+
Sbjct: 237 VLHTVVKSGIPVATVIGGGYSRDIDRL 263
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVK-LLFQSKSISTAMIVD 62
GTL AG +AL+RG + + GG HHA + G GFC D+++ K L+ + +IVD
Sbjct: 75 GTLLAGQIALQRGLACSTAGGTHHAFPSHGSGFCLLNDLAVTAKHLISEPTPKRKILIVD 134
Query: 63 LDAHQFSDYYF 73
LD HQ F
Sbjct: 135 LDVHQGDGTAF 145
>gi|291296879|ref|YP_003508277.1| histone deacetylase superfamily protein [Meiothermus ruber DSM
1279]
gi|290471838|gb|ADD29257.1| histone deacetylase superfamily [Meiothermus ruber DSM 1279]
Length = 296
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 138/289 (47%), Gaps = 23/289 (7%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
+L HPF K+ + L + +I ++ E L +AHT YL
Sbjct: 12 LELPDYHPFPKYKYAGVAEALRGEL-------------DIQPAPAIAWETLALAHTPDYL 58
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGG 243
+ L+ + + V +P + Q R + + GGTL A AL+ G +N+ GG
Sbjct: 59 QKLR---SEGLSRQESHKVGLP--WSQSLLTRAL-HAAGGTLAATLDALQTGLGLNLAGG 112
Query: 244 FHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIM 303
HHA + G+C + D+++ + L ++VDLDAHQGNG F N+ +F +
Sbjct: 113 THHAYPGRAEGYCLFNDVAVAIAYLRAQGWNGRVLVVDLDAHQGNGTAAFFRNDPTVFTL 172
Query: 304 ETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLL 360
KE + LA T D YLE +EA LE++ + PD++ YNAG DVL
Sbjct: 173 SVHAERNYPLKKEPGDLNVGLADATNDAAYLEALEAALEQAF-THRPDLVFYNAGVDVLQ 231
Query: 361 NDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIA 409
ND G L +S QG+ RD +VF K R+ P+V++ GGY + +A
Sbjct: 232 NDRFGRLGLSLQGLAERDRMVFEKIRQAGQPLVVVMGGGYNRDPQTTVA 280
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL A AL+ G +N+ GG HHA + G+C + D+++ + L ++VDL
Sbjct: 92 GTLAATLDALQTGLGLNLAGGTHHAYPGRAEGYCLFNDVAVAIAYLRAQGWNGRVLVVDL 151
Query: 64 DAHQ 67
DAHQ
Sbjct: 152 DAHQ 155
>gi|110833112|ref|YP_691971.1| deacetylase [Alcanivorax borkumensis SK2]
gi|110646223|emb|CAL15699.1| deacetylase family protein [Alcanivorax borkumensis SK2]
Length = 290
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 122/259 (47%), Gaps = 15/259 (5%)
Query: 148 IFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVP- 205
+ +L + DN P L AH +Y+ ++ + + A+ + +P
Sbjct: 7 LHTHLRRRRIACVDNEFRPGRAKAALLSQAHCPQYVSAMVNGTLDAKALRRM----GLPW 62
Query: 206 -NYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLL 264
+++ + PM GTL LAL G + ++ GG HHA G GFC + D
Sbjct: 63 SEALLKRSCIAPM-----GTLMTTQLALENGIACHLAGGTHHAHYDFGSGFCIFNDQVFA 117
Query: 265 VKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET-CITSKAKEAIRCR--IEL 321
V+ L ++ ++ D D HQG+G +E R F C + +R +EL
Sbjct: 118 VRQLLDRGVVNKVLMFDCDVHQGDGTAAMLADEPRAFTCSIHCEKNFPVRKMRSDLDVEL 177
Query: 322 APYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV 381
DQ YL+ + + LE L+S PD+++Y+AG D+ +DPLG L IS QGI RD V
Sbjct: 178 PLGMTDQDYLDTVFSTLESLLKSEQPDLVLYDAGVDIFQHDPLGRLHISEQGIADRDRGV 237
Query: 382 FMKARERRVPIVMLTSGGY 400
++ R R +PI + GGY
Sbjct: 238 IVRCRSRNIPIATVIGGGY 256
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL LAL G + ++ GG HHA G GFC + D V+ L ++ ++ D
Sbjct: 76 GTLMTTQLALENGIACHLAGGTHHAHYDFGSGFCIFNDQVFAVRQLLDRGVVNKVLMFDC 135
Query: 64 DAHQ 67
D HQ
Sbjct: 136 DVHQ 139
>gi|318042114|ref|ZP_07974070.1| histone deacetylase family protein [Synechococcus sp. CB0101]
Length = 304
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 127/296 (42%), Gaps = 23/296 (7%)
Query: 109 RPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQE 168
RP P VY P Y+ L H F K++ + L + D +EP
Sbjct: 2 RP-PFVYHPAYSA---PLPSSHRFPMAKFRLLHQLLQ--------DQGLANVDQFVEPLP 49
Query: 169 VSEEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA 227
L + H +Y ++ + + + P VQ+ +L VGGT+
Sbjct: 50 APRRWLELVHEPRYHRAFARGELSHQEQRRIGLPATTP--LVQRTWLA-----VGGTVLT 102
Query: 228 GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQG 287
LAL G + ++ GG HHA G GFC + D ++ ++L + M++DLD HQG
Sbjct: 103 ARLALEHGLACHLAGGTHHAYPDHGSGFCIFNDCAVAARVLLAESRVQQLMVIDLDVHQG 162
Query: 288 NGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRS 344
+ F +E R+F + S K+ + L ED YL I + L
Sbjct: 163 DATAAIFADEPRVFTVSVHCQSNFPLRKQCSDVDLPLDDGLEDDAYLSAIGDLIPNLLDQ 222
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
PD+++YNAG D +D LG L ++ G++ RD LV R +P+ + GGY
Sbjct: 223 VRPDLVLYNAGVDPHRDDRLGKLCLTSTGLLNRDRLVLDACLRRSIPVATVIGGGY 278
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G + ++ GG HHA G GFC + D ++ ++L + M++DL
Sbjct: 98 GTVLTARLALEHGLACHLAGGTHHAYPDHGSGFCIFNDCAVAARVLLAESRVQQLMVIDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|418738197|ref|ZP_13294593.1| histone deacetylase family protein [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
gi|410746371|gb|EKQ99278.1| histone deacetylase family protein [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
Length = 270
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 120/243 (49%), Gaps = 9/243 (3%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
+ P+ ++ L + HT+++LK+ F I+E +P + K ++ VG
Sbjct: 17 VYRPEPAKDKDLALVHTKEFLKN----FFSLKITERTQYSELP---LTKQIVQSFVLAVG 69
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
GT+ A L + + +IGGGFHH+ + GFC D ++ VKL ++ + +DL
Sbjct: 70 GTILATELTQKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIAVKLYQRTYPGRKILFIDL 129
Query: 283 DAHQGNGYEKDFMNETRIFI--METCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLER 340
D HQGNG F ++ +F M KE I L TED YLE +E L +
Sbjct: 130 DLHQGNGNSVVFQEDSDVFTFSMHQENLYPKKEKSGLDIPLEEGTEDGKYLELLEESLHK 189
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
F PD+I Y AG D D LG L ++ QG+ +RD++V R VP V+L +GGY
Sbjct: 190 IKSDFKPDLIFYIAGADPFEGDSLGDLKLTLQGLRKRDKIVRDFVRALDVPAVILPAGGY 249
Query: 401 LKQ 403
K
Sbjct: 250 AKD 252
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A L + + +IGGGFHH+ + GFC D ++ VKL ++ + +DL
Sbjct: 70 GTILATELTQKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIAVKLYQRTYPGRKILFIDL 129
Query: 64 DAHQ 67
D HQ
Sbjct: 130 DLHQ 133
>gi|410625716|ref|ZP_11336491.1| histone deacetylase 11 [Glaciecola mesophila KMM 241]
gi|410154792|dbj|GAC23260.1| histone deacetylase 11 [Glaciecola mesophila KMM 241]
Length = 318
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 95/191 (49%), Gaps = 3/191 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
V GT+ LAL G ++N+ GG+HHA G GFC + D+ L + Q+ +I +I
Sbjct: 114 VAGTVMTSSLALEHGKALNLTGGYHHAFANFGSGFCLFNDLYLAALNMLQTPTIRKVLIF 173
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAG 337
D D HQG+G K N R+F + K+ LA D YL +E
Sbjct: 174 DCDVHQGDGTAKLASNNKRVFTVSIHGEKNFPHRKQVSDLDFPLAKGATDDEYLTVVEGA 233
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L + +F PD ++Y+AG D+ +ND LG L IS G+ RD +VF + VP+ +
Sbjct: 234 LHQVFSTFQPDAVIYDAGVDIHINDDLGHLHISTPGVYARDCMVFEACEKYGVPVAAVIG 293
Query: 398 GGYLKQTARII 408
GGY + ++
Sbjct: 294 GGYQRDIDALV 304
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G ++N+ GG+HHA G GFC + D+ L + Q+ +I +I D
Sbjct: 116 GTVMTSSLALEHGKALNLTGGYHHAFANFGSGFCLFNDLYLAALNMLQTPTIRKVLIFDC 175
Query: 64 DAHQ 67
D HQ
Sbjct: 176 DVHQ 179
>gi|284037371|ref|YP_003387301.1| histone deacetylase [Spirosoma linguale DSM 74]
gi|283816664|gb|ADB38502.1| Histone deacetylase [Spirosoma linguale DSM 74]
Length = 300
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 134/299 (44%), Gaps = 20/299 (6%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
I + P Y + +L + H F K++ I L L E T+ N P+ V +
Sbjct: 4 IAFSPVYRL---RLPEGHRFPMLKYELIHEQL-------LYEGT-CTEANFFGPEPVDDR 52
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
L HT +Y+++LK + P ++ + GT+E LA
Sbjct: 53 WALGVHTAEYVQALKTCTVDPKMMRRIGFPLTPELIDREWII------TQGTIECTQLAQ 106
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
R G ++NI GG HHA +G GFC D+ + L + ++VDLD HQGNG
Sbjct: 107 RDGVAMNIAGGTHHAFPDRGEGFCMLNDVGIAANYLLEIGQAKKILVVDLDVHQGNGTAV 166
Query: 293 DFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDI 349
F E+R+F KE I+L T D+ YL + L + PD
Sbjct: 167 MFQTESRVFTFSMHGADNYPLRKETSDLDIDLPTGTTDEVYLNTLYDTLPHLISQQQPDF 226
Query: 350 IVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
+ Y +G D+L +D LG L+IS +G +RD VF +A + +PIV+ GGY + I+
Sbjct: 227 LFYVSGVDILASDRLGKLSISREGCRQRDVFVFEQAIKNNLPIVVSMGGGYSPRLTDIV 285
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+E LA R G ++NI GG HHA +G GFC D+ + L + ++VDL
Sbjct: 97 GTIECTQLAQRDGVAMNIAGGTHHAFPDRGEGFCMLNDVGIAANYLLEIGQAKKILVVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|418720651|ref|ZP_13279847.1| histone deacetylase family protein [Leptospira borgpetersenii str.
UI 09149]
gi|410742925|gb|EKQ91670.1| histone deacetylase family protein [Leptospira borgpetersenii str.
UI 09149]
Length = 270
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 119/243 (48%), Gaps = 9/243 (3%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
+ P+ ++ L + HT+++LK F I+E +P + K ++ VG
Sbjct: 17 VYRPEPAKDKDLALVHTKEFLKD----FFSLKITERTQYSELP---LTKQIVQSFVLAVG 69
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
GT+ A L + + +IGGGFHH+ + GFC D ++ VKL ++ + +DL
Sbjct: 70 GTILATELTQKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIAVKLYQRTYPGRKILFIDL 129
Query: 283 DAHQGNGYEKDFMNETRIFI--METCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLER 340
D HQGNG F ++ +F M KE I L TED YLE +E L +
Sbjct: 130 DLHQGNGNSVVFQEDSDVFTFSMHQENLYPKKEKSGLDIPLEEGTEDGKYLELLEESLHK 189
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
F PD+I Y AG D D LG L ++ QG+ +RD++V R VP V+L +GGY
Sbjct: 190 IKSDFKPDLIFYIAGADPFEGDSLGDLKLTLQGLRKRDKIVRDFVRALDVPAVILPAGGY 249
Query: 401 LKQ 403
K
Sbjct: 250 AKD 252
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A L + + +IGGGFHH+ + GFC D ++ VKL ++ + +DL
Sbjct: 70 GTILATELTQKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIAVKLYQRTYPGRKILFIDL 129
Query: 64 DAHQ 67
D HQ
Sbjct: 130 DLHQ 133
>gi|406707601|ref|YP_006757953.1| histone deacetylase family protein [alpha proteobacterium HIMB59]
gi|406653377|gb|AFS48776.1| histone deacetylase family protein [alpha proteobacterium HIMB59]
Length = 298
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 141/303 (46%), Gaps = 30/303 (9%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
I Y P+Y++ + H F K+ ++N+L F ++ + +P E
Sbjct: 3 IFYHPDYDI---PVPSTHRFVGSKFSDLYNHLQSQ--------SFASKLKVGQPTPAPME 51
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGFL 230
+L AH Y++ + E L+ +P + +L + GT
Sbjct: 52 RLTRAHFSLYIEKVSQD---ELSKEDLRLINLPWSERLRNRSFLA-----IEGTYLTARQ 103
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL+ G + ++GGG HHA G GFC + D+ K L + +I+DLD HQG+G
Sbjct: 104 ALKSGVACHVGGGTHHAHHNHGLGFCVFNDLGYTAKNLIAEGHVEKVLILDLDVHQGDGT 163
Query: 291 EKDFMNETRIFIMETC-ITSKA-----KEAIRCRIELAPYTEDQHYLEKIEAGLERSLRS 344
+ RIF TC I S++ K+ I L T+D+ YL+ + L+ RS
Sbjct: 164 IDICQGDPRIF---TCSIHSESNFPFEKKQGWMDIGLPAGTKDEAYLDTLIQTLQSIERS 220
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT 404
PD+++++AG DV D LG L +S +GI +RD+LV R + +P+ + GGY K T
Sbjct: 221 LTPDLVLFDAGIDVYSEDGLGNLELSIEGIRKRDQLVLEHYRGKDIPVATVIGGGYSKDT 280
Query: 405 ARI 407
+
Sbjct: 281 QEL 283
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT AL+ G + ++GGG HHA G GFC + D+ K L + +I+DL
Sbjct: 96 GTYLTARQALKSGVACHVGGGTHHAHHNHGLGFCVFNDLGYTAKNLIAEGHVEKVLILDL 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|428776510|ref|YP_007168297.1| histone deacetylase [Halothece sp. PCC 7418]
gi|428690789|gb|AFZ44083.1| Histone deacetylase [Halothece sp. PCC 7418]
Length = 300
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 135/301 (44%), Gaps = 34/301 (11%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P PI+Y P+Y L K H F K F+ L E + D +I+PQ+V
Sbjct: 2 PLPIIYHPDY---VTPLPKGHRFPMAK------------FSLLQE--ILIADGVIQPQQV 44
Query: 170 SEEQLL------IAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
+ +L + HT Y+ + + + A + L P + C VG
Sbjct: 45 HQPELPPREWLELIHTPDYVDAYCDGTLDPKAQRRIG-LPWSPELVRRTCLA------VG 97
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
GT+ LAL +G + N GG HHA G GFC + D+++ ++ + +IVDL
Sbjct: 98 GTILTAKLALEQGIACNTAGGTHHAFPDYGAGFCIFNDLAVAPAVMLALGLVKKVLIVDL 157
Query: 283 DAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLE 339
D HQG+G F ++ R+F K+ + L +D+ YL+ + L
Sbjct: 158 DVHQGDGTAFVFQDDPRVFTFSMHCGDNFPGRKQQSDLDLPLPKGLDDEGYLQILAKHLP 217
Query: 340 RSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGG 399
L + PD++ Y+AG D ++D LG LA+S +G+ RRD LV + P + GG
Sbjct: 218 EVLAAVQPDLVFYDAGVDPHVDDRLGKLALSDRGLYRRDRLVLSTCLAQDYPTACVIGGG 277
Query: 400 Y 400
Y
Sbjct: 278 Y 278
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL +G + N GG HHA G GFC + D+++ ++ + +IVDL
Sbjct: 98 GTILTAKLALEQGIACNTAGGTHHAFPDYGAGFCIFNDLAVAPAVMLALGLVKKVLIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|347539598|ref|YP_004847023.1| histone deacetylase superfamily protein [Pseudogulbenkiania sp.
NH8B]
gi|345642776|dbj|BAK76609.1| histone deacetylase superfamily protein [Pseudogulbenkiania sp.
NH8B]
Length = 312
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 121/253 (47%), Gaps = 12/253 (4%)
Query: 162 NIIEPQEV-SEEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRY 219
+++EP + +L H Y+ +L + S A E+ L P + C+
Sbjct: 37 HLLEPAPAATPAELCRVHDAAYVHALLEGSLPERAQREIG-LPWSPQLVARACH------ 89
Query: 220 HVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMI 279
VG T+ A +AL +G +N+ GG HHA KG GFC + D+++ +LL I A++
Sbjct: 90 SVGATIAAARVALLQGCGVNLAGGTHHAQADKGSGFCVFNDVAVAARLLLDEGHIRRALV 149
Query: 280 VDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEA 336
+DLD HQGNG F ++ R+F + K A +EL T D+ YL + A
Sbjct: 150 IDLDVHQGNGTAALFRDDARVFTFSMHGQNNFPFRKVAGDRDVELPDGTSDEGYLALLSA 209
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
LE PD++ Y AG D D LG L ++ G++RRD +V + V + +
Sbjct: 210 NLEELFWLARPDLVFYLAGADPYEGDRLGKLGLTADGLLRRDRMVLDACQRYEVGVAIAM 269
Query: 397 SGGYLKQTARIIA 409
+GGY A +A
Sbjct: 270 AGGYAVPIADTVA 282
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
T+ A +AL +G +N+ GG HHA KG GFC + D+++ +LL I A+++DLD
Sbjct: 94 TIAAARVALLQGCGVNLAGGTHHAQADKGSGFCVFNDVAVAARLLLDEGHIRRALVIDLD 153
Query: 65 AHQ 67
HQ
Sbjct: 154 VHQ 156
>gi|393762659|ref|ZP_10351285.1| histone deacetylase [Alishewanella agri BL06]
gi|392606281|gb|EIW89166.1| histone deacetylase [Alishewanella agri BL06]
Length = 312
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 142/303 (46%), Gaps = 25/303 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y+ L H + K++ ++ L A + + ++P V+
Sbjct: 7 PLIYHPCYSE--LALPANHRYPIGKYRSLYQQLL---------ALGVPESGFLQPAPVTA 55
Query: 172 EQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
L H Y+++L + + + A+ + + + ++ +GGTL
Sbjct: 56 AALSTLHDPAYVEALCQGTLDSKAMRRI-------GFPWSEQLIKRSLTSLGGTLLCAEQ 108
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL+ G ++++ GG+HHA +G GFC + D++ L Q + + +I DLD HQG+G
Sbjct: 109 ALQHGLALHLSGGYHHAFYAEGSGFCLFNDLAF-AALSMQQQGVGPVLIFDLDVHQGDGT 167
Query: 291 EKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFC 346
F + I I + K A + R I L D YLE + L+ LR +
Sbjct: 168 AALFTANSGI-ITASIHCEKNFPARKQRSDWDIGLDKDCTDASYLEAVSQSLDNLLRWYQ 226
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
P++++Y+AG D+ D LGLL IS G++ RD LV + R+ +P+ + GGY +
Sbjct: 227 PELVIYDAGVDIHQQDDLGLLQISTAGVLARDTLVLQRCRDAGIPVAAVIGGGYQRDLNA 286
Query: 407 IIA 409
+ A
Sbjct: 287 LTA 289
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL AL+ G ++++ GG+HHA +G GFC + D++ L Q + + +I DL
Sbjct: 101 GTLLCAEQALQHGLALHLSGGYHHAFYAEGSGFCLFNDLA-FAALSMQQQGVGPVLIFDL 159
Query: 64 DAHQ 67
D HQ
Sbjct: 160 DVHQ 163
>gi|418023646|ref|ZP_12662631.1| histone deacetylase superfamily [Shewanella baltica OS625]
gi|353537529|gb|EHC07086.1| histone deacetylase superfamily [Shewanella baltica OS625]
Length = 302
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 143/302 (47%), Gaps = 25/302 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y Y+ L H F + K+ ++ YL +++ A+F T P ++
Sbjct: 5 PLIYHASYSK--LALPPHHRFPTTKYANLRQYLLENLLA--TPAQFHT------PTAMTV 54
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+ ++ H +Y++ + + AA+ + + + + + V GT L
Sbjct: 55 QDVMQVHQREYVEQFIAGTLPTAALRRI-------GFPWSEALVERTLHSVAGTTLTASL 107
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
A+ +G +++ GG+HHA G G+C + D+ L + S+ + +I D D HQG+G
Sbjct: 108 AINQGIGLHLTGGYHHAHYDFGSGYCIFNDLILAAQNAIASQQVHKVLIFDCDVHQGDGS 167
Query: 291 EKDFMNETRIFIMETCITSKA-----KEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
+++ I+ I K K+ IEL ++D YLE +E L +R
Sbjct: 168 AT--LSQRHQGIISCSIHCKENFPSRKQHSHHDIELTKGSDDNLYLETVEQTLALLIRIH 225
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PD+I+Y+AG D+ ND LGLL IS +G+ RRD V A+ +PI + GGY +
Sbjct: 226 QPDLILYDAGVDIHQNDDLGLLNISQEGLFRRDLTVLSMAKSENIPIAAVIGGGYSRDAL 285
Query: 406 RI 407
++
Sbjct: 286 QL 287
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LA+ +G +++ GG+HHA G G+C + D+ L + S+ + +I D
Sbjct: 100 GTTLTASLAINQGIGLHLTGGYHHAHYDFGSGYCIFNDLILAAQNAIASQQVHKVLIFDC 159
Query: 64 DAHQ 67
D HQ
Sbjct: 160 DVHQ 163
>gi|308048872|ref|YP_003912438.1| histone deacetylase [Ferrimonas balearica DSM 9799]
gi|307631062|gb|ADN75364.1| Histone deacetylase [Ferrimonas balearica DSM 9799]
Length = 303
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 100/191 (52%), Gaps = 3/191 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
GGTL A LAL G + ++ GG+HHA G GFC + D+ L +LL Q +++S +I
Sbjct: 96 CGGTLRAAELALEHGIACHLSGGYHHAHRDFGSGFCVFNDLVLAARLLLQRQAVSRVLIF 155
Query: 281 DLDAHQGNGYEKDFMNETRIFIMET-CITSKAKEAIRCRIE--LAPYTEDQHYLEKIEAG 337
D D HQG+G ++ I C + R ++ L +D YL ++
Sbjct: 156 DCDVHQGDGSAALCQDDPDIITCSLHCERNFPARKARSHVDVPLENDLDDAAYLATLDTV 215
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L L + PD+++Y+AG DV +D LG L++S G+ +RD V ++R +P+ +
Sbjct: 216 LPWLLNLYQPDLVIYDAGVDVHQDDALGYLSLSDHGLYQRDHAVLSACQQRGIPVAAVIG 275
Query: 398 GGYLKQTARII 408
GGY K A ++
Sbjct: 276 GGYAKDHADLV 286
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL A LAL G + ++ GG+HHA G GFC + D+ L +LL Q +++S +I D
Sbjct: 98 GTLRAAELALEHGIACHLSGGYHHAHRDFGSGFCVFNDLVLAARLLLQRQAVSRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|384440597|ref|YP_005655321.1| histone deacetylase [Thermus sp. CCB_US3_UF1]
gi|359291730|gb|AEV17247.1| Histone deacetylase [Thermus sp. CCB_US3_UF1]
Length = 294
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 122/251 (48%), Gaps = 11/251 (4%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
I+ EV E L +AH YL+ L F E + +P LR + G
Sbjct: 37 ILPAPEVPREALYLAHQGAYLERL---FTQGLTREESLRLGLP---FHPALLRRALHAAG 90
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST-AMIVD 281
GTL A AL G +N+ GG HHA + G+ + D+++ + L + A+++D
Sbjct: 91 GTLAAAEDALDTGLGLNLSGGTHHAFPDRAEGYSLFNDVAVALAWLRAKRGFGGRALVLD 150
Query: 282 LDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGL 338
LDAHQGNG F + +F + KE + L TED YL +E L
Sbjct: 151 LDAHQGNGTAVFFGEDPTVFTLSLHGERNYPLKKERSDLDVGLPDGTEDGAYLRALEEAL 210
Query: 339 ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSG 398
E + ++F P+++ YNAG DVL D G LA+SP+G+ RD V+ + VP+V++ G
Sbjct: 211 EVA-QAFRPELVFYNAGVDVLRGDRFGRLALSPEGVRARDLRVYRFVKALGVPLVVVMGG 269
Query: 399 GYLKQTARIIA 409
GY + A +A
Sbjct: 270 GYNRDPALTVA 280
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST-AMIVD 62
GTL A AL G +N+ GG HHA + G+ + D+++ + L + A+++D
Sbjct: 91 GTLAAAEDALDTGLGLNLSGGTHHAFPDRAEGYSLFNDVAVALAWLRAKRGFGGRALVLD 150
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 151 LDAHQ 155
>gi|443476226|ref|ZP_21066143.1| Histone deacetylase [Pseudanabaena biceps PCC 7429]
gi|443018851|gb|ELS33037.1| Histone deacetylase [Pseudanabaena biceps PCC 7429]
Length = 305
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 140/305 (45%), Gaps = 30/305 (9%)
Query: 112 PIVYRPEY-----NVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEP 166
PI+Y P Y N + F +EK ++ ++ L+ + P
Sbjct: 4 PIIYHPNYVAPIANTNRFPMEK----------------FRLLYEMLLTDGVAQPEQFFRP 47
Query: 167 QEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLE 226
+ E + + H +Y+ + W+ N+ ++ + +P + + Y R VGGTL
Sbjct: 48 ELPDLEAIALVHDREYVDAY-WNGNLEPKAQR--RIGLP-WSPELAYR--TRIAVGGTLL 101
Query: 227 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 286
ALR+G + N GG HHA + G GFC + D+++ ++L + + +IVDLD HQ
Sbjct: 102 TARFALRQGLACNTAGGTHHAFPSYGSGFCIFNDLAIASRVLLKEGLVKKILIVDLDVHQ 161
Query: 287 GNGYEKDFMNETRIFI--METCITSKAKEAIRCR-IELAPYTEDQHYLEKIEAGLERSLR 343
G+G F NE ++F M I + + I R I L ED YL + L L
Sbjct: 162 GDGTAFIFQNEPQVFTFSMHCQINFPSIKQISDRDIPLPEGMEDDAYLRMLANHLPDLLT 221
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD+++Y+AG D + D LG LA++ G+ RRD V + P+ + GGY +
Sbjct: 222 EIRPDLVLYDAGVDPHIGDRLGKLALTDAGLYRRDMQVLSTCVAQGFPVASVIGGGYCED 281
Query: 404 TARII 408
++
Sbjct: 282 MRSLV 286
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL ALR+G + N GG HHA + G GFC + D+++ ++L + + +IVDL
Sbjct: 98 GTLLTARFALRQGLACNTAGGTHHAFPSYGSGFCIFNDLAIASRVLLKEGLVKKILIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|359436411|ref|ZP_09226516.1| histone deacetylase family protein [Pseudoalteromonas sp. BSi20311]
gi|358028866|dbj|GAA62765.1| histone deacetylase family protein [Pseudoalteromonas sp. BSi20311]
Length = 267
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 124/266 (46%), Gaps = 43/266 (16%)
Query: 164 IEPQEVSEEQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNY--FVQKCYLRPMRYH 220
I P + QL + H+ Y+ + L S A+ ++ P+ V++ Y
Sbjct: 13 ISPSPATTAQLSLCHSSDYIANFLNGSLTDKAVKKM----GFPHSPELVER-----TLYS 63
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
VG +++A AL+ G + N+ GG+HHA G GFC + D+++ L ++ T +I
Sbjct: 64 VGASIQAAESALKNGLAANLSGGYHHAYSNYGSGFCIFNDLAIAAAHLITTEQADTVLIF 123
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCRI----------ELAPY------ 324
D D HQG+G + IT + ++ + C I +L+ Y
Sbjct: 124 DCDVHQGDGTAQ--------------ITQQHEQIVSCSIHCEQNFPRQKQLSNYDFGLPA 169
Query: 325 -TEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFM 383
T D YL +E LE +R PDII+YNAG D+ D LGL +S G+ +RD V
Sbjct: 170 NTTDAEYLTTLEQALELCVRLHQPDIILYNAGADIYTKDELGLFDVSLAGVYKRDFAVLN 229
Query: 384 KARERRVPIVMLTSGGYLKQTARIIA 409
++R +P++ GGY + +++
Sbjct: 230 FCKQRNIPLMCALGGGYQRNINNLVS 255
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
+++A AL+ G + N+ GG+HHA G GFC + D+++ L ++ T +I D
Sbjct: 66 ASIQAAESALKNGLAANLSGGYHHAYSNYGSGFCIFNDLAIAAAHLITTEQADTVLIFDC 125
Query: 64 DAHQ 67
D HQ
Sbjct: 126 DVHQ 129
>gi|405971212|gb|EKC36062.1| hypothetical protein CGI_10022459 [Crassostrea gigas]
Length = 361
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 118/259 (45%), Gaps = 9/259 (3%)
Query: 148 IFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNY 207
+ +L I+ ++EP + + L + HT Y++ S N + +
Sbjct: 78 VLRFLKTDNVISMKQVLEPSAIDPDFLKLVHTPDYVERF-LSGNTSVEEQRLTGFQWSTG 136
Query: 208 FVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKL 267
V +C R GGTL AG LA+ G + + GGG HHA + G G+C D+++ +
Sbjct: 137 IVSRC-----RLETGGTLLAGQLAMEHGIACSTGGGTHHAFPSHGAGYCLLNDLAVTAAV 191
Query: 268 LFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPY 324
LF+ + +IVDLD HQG+G F + +F K+ + L
Sbjct: 192 LFKECQVKKVLIVDLDVHQGDGTACIFSDNCAVFTFSMHSEKNYPLKKQMSDMDVGLVTG 251
Query: 325 TEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMK 384
D+ YL + + L L SF PDI++Y+AG D D LG L ++ G+ +RD V
Sbjct: 252 ITDKDYLAHLHSYLPWLLESFRPDIVLYDAGVDPHEKDELGKLNLTDNGLFQRDFYVINL 311
Query: 385 ARERRVPIVMLTSGGYLKQ 403
R +P+ + GGY K
Sbjct: 312 CVSRGIPVATVIGGGYDKD 330
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL AG LA+ G + + GGG HHA + G G+C D+++ +LF+ + +IVDL
Sbjct: 147 GTLLAGQLAMEHGIACSTGGGTHHAFPSHGAGYCLLNDLAVTAAVLFKECQVKKVLIVDL 206
Query: 64 DAHQ 67
D HQ
Sbjct: 207 DVHQ 210
>gi|254452992|ref|ZP_05066429.1| histone deacetylase superfamily [Octadecabacter arcticus 238]
gi|198267398|gb|EDY91668.1| histone deacetylase superfamily [Octadecabacter arcticus 238]
Length = 301
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 136/295 (46%), Gaps = 26/295 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY Y+ H + H F+ K+ + N+L + + F Q + I V
Sbjct: 5 PVVYNDAYDFH---VPPTHRFNGTKFSKLVNHLQR--------SDFSKQLDFIHSSPVRY 53
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGF 229
E + AH Y++ + A + E + +P +++ +L + GT +
Sbjct: 54 EDIKRAHANDYVQRVATG---ALLREEVRQINLPINTQLIKRSFLA-----LNGTYKTAL 105
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
AL+ G + + GG HHA + G GFC + D++ L + + T +I+DLD HQG+G
Sbjct: 106 KALQTGVACHAAGGTHHAHYSHGSGFCVFNDLAFTALNLIEHGMVETVLILDLDVHQGDG 165
Query: 290 YEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
+ I+ E + ++ R + L + ED YL+++ L R F
Sbjct: 166 TIDICHGKRGIYTCSLHCEQNFPFQKRQGTR-DVPLDSHLEDNAYLDQLHRTLADISRDF 224
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
P +++Y+AG DV L D LG L ++ +GI +RD +V + +PI + GGY
Sbjct: 225 TPQLVLYDAGVDVFLGDQLGNLDLTLEGIFKRDCIVLEHFKNCNIPIATVIGGGY 279
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT + AL+ G + + GG HHA + G GFC + D++ L + + T +I+DL
Sbjct: 99 GTYKTALKALQTGVACHAAGGTHHAHYSHGSGFCVFNDLAFTALNLIEHGMVETVLILDL 158
Query: 64 DAHQ 67
D HQ
Sbjct: 159 DVHQ 162
>gi|389584267|dbj|GAB67000.1| histone deacetylase, partial [Plasmodium cynomolgi strain B]
Length = 393
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 146/304 (48%), Gaps = 27/304 (8%)
Query: 105 SVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNII 164
S ++R P V+ P Y+ K EK H F KK++ IF+ L +E D I
Sbjct: 93 SSLSRNPPYVFHPIYSSVPMK-EKYHRFKIKKYEKIFSRL--------IEGGIYNSDYSI 143
Query: 165 EPQEVSE--EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
+SE L H E +++ + F++ +E + Y C +
Sbjct: 144 PSCNISEMITPLFSIHDEGFIEEI---FSIVINNEQVEKYELTLYPYLVCRFL---IEIN 197
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
GT+ + LA++ ++IGGG HH+ + +G GFC + D+++ V L I A+I+D+
Sbjct: 198 GTILSSLLAMKHFMCMHIGGGNHHSKKNRGDGFCIFNDVAIAVHFLLSHGLIDKAIILDV 257
Query: 283 DAHQGNGYEKDFMNETRIFIMET-CITS----KAKEAIRCRIELAPYTEDQHYLEKIEAG 337
D HQG+G + F N + + C + KA I +E + D YLE +
Sbjct: 258 DVHQGDGTAEIFRNCANVKTISLHCRDNFPPVKANSTI--DVEFDSFATDADYLEAYKKV 315
Query: 338 LER-SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
L+ + C II Y +G D+ +D LG L++S GI +RD + + AR+R +P+V +
Sbjct: 316 LDDIAAEQNC--IIFYLSGVDISADDDLGFLSVSDAGIYQRDLMTYQMARQRGIPVVTVL 373
Query: 397 SGGY 400
SGGY
Sbjct: 374 SGGY 377
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ + LA++ ++IGGG HH+ + +G GFC + D+++ V L I A+I+D+
Sbjct: 198 GTILSSLLAMKHFMCMHIGGGNHHSKKNRGDGFCIFNDVAIAVHFLLSHGLIDKAIILDV 257
Query: 64 DAHQ 67
D HQ
Sbjct: 258 DVHQ 261
>gi|326334871|ref|ZP_08201072.1| histone deacetylase [Capnocytophaga sp. oral taxon 338 str. F0234]
gi|325692908|gb|EGD34846.1| histone deacetylase [Capnocytophaga sp. oral taxon 338 str. F0234]
Length = 299
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 91/183 (49%), Gaps = 3/183 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
V GT++ AL G + NI GG HHA +G GFC D ++ L Q + +I+
Sbjct: 93 VQGTIDGALYALEDGIAFNIAGGTHHAYSNRGEGFCMLNDQAIAAAYLLQYRKAKRILII 152
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAG 337
DLD HQGNG + F + +F KE IEL T D YL ++
Sbjct: 153 DLDVHQGNGTAEIFSHTPEVFTFSMHAKGNYPFVKEQSDMDIELEDKTTDTVYLSLLKEA 212
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L + PD + Y +G DVL +D LG L +S +G RD+LVF + ++R++PI
Sbjct: 213 LTKLFEKHQPDFVFYQSGVDVLESDKLGKLNLSIEGCAERDKLVFEQCKKRQIPIQCSMG 272
Query: 398 GGY 400
GGY
Sbjct: 273 GGY 275
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++ AL G + NI GG HHA +G GFC D ++ L Q + +I+DL
Sbjct: 95 GTIDGALYALEDGIAFNIAGGTHHAYSNRGEGFCMLNDQAIAAAYLLQYRKAKRILIIDL 154
Query: 64 DAHQ-------FSDYYFPSAHSIKRKRKVEFLKERKALEDEITSEPQESV 106
D HQ FS S+ K F+KE+ ++ E+ + ++V
Sbjct: 155 DVHQGNGTAEIFSHTPEVFTFSMHAKGNYPFVKEQSDMDIELEDKTTDTV 204
>gi|213963775|ref|ZP_03392024.1| histone deacetylase family protein [Capnocytophaga sputigena Capno]
gi|213953551|gb|EEB64884.1| histone deacetylase family protein [Capnocytophaga sputigena Capno]
Length = 300
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 138/303 (45%), Gaps = 27/303 (8%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
I Y P YN + + H F +K+ + L ++ + A N P++ ++
Sbjct: 3 IAYHPLYN---HPVPENHRFPMEKYALLPQQL---LYEGIASAS-----NFHTPEKATQA 51
Query: 173 QLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYL--RPMRYHVGGTLEAGF 229
+ HT+ YL + L + + A+P FVQ L R + V GT+E
Sbjct: 52 TAALVHTQPYLHNFLHLTLSHKE--------ALPIGFVQCQQLVDRELTL-VQGTVEGAL 102
Query: 230 LALRRG-WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
ALR G + NI GG HHA +G GFC D ++ L ++ +IVDLD HQGN
Sbjct: 103 WALRTGEVAFNIAGGTHHAFSNRGEGFCMLNDQAIAAAYLLHHTAVKKVLIVDLDVHQGN 162
Query: 289 GYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
G + F N +F + KE I L T+D+ YL+ + + L + + +
Sbjct: 163 GTAEIFRNTPEVFTFSMHAQANYPFEKEQSDKDIALPNGTDDKTYLDILRSTLPQLIEAH 222
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PD + Y AG DVL D LG L+++ +G RD LVF ++P+ GGY Q
Sbjct: 223 QPDFVFYQAGVDVLATDKLGKLSLTVEGCGERDRLVFETCHRYQLPVQCSMGGGYSPQLT 282
Query: 406 RII 408
I+
Sbjct: 283 SIL 285
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRG-WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 62
GT+E ALR G + NI GG HHA +G GFC D ++ L ++ +IVD
Sbjct: 96 GTVEGALWALRTGEVAFNIAGGTHHAFSNRGEGFCMLNDQAIAAAYLLHHTAVKKVLIVD 155
Query: 63 LDAHQ 67
LD HQ
Sbjct: 156 LDVHQ 160
>gi|392544970|ref|ZP_10292107.1| histone deacetylase [Pseudoalteromonas rubra ATCC 29570]
Length = 307
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 133/299 (44%), Gaps = 21/299 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ F + H F K+ +++ V A + DN+ +P+ S
Sbjct: 13 PLVYHPNYS---FSFDPNHRFVMSKFANLYQQ---------VRAMGLIGDNVYQPELGSP 60
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E L H + YL L W + A S + + + + P+ GTL+ LA
Sbjct: 61 EPLETVHCDTYLWDL-WRNQLDAKSMRRIGLPWSEQLMARTFTAPL-----GTLKTAELA 114
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L+ G + ++ GG HHA G G+C D+ L ++ +I DLD HQG+G
Sbjct: 115 LQTGVACHLAGGTHHAHYDFGSGYCMVNDLVFTSTTLIAQGKVNNVLIFDLDVHQGDGTA 174
Query: 292 KDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
+ +F K + I L +D YL+ +E L L PD
Sbjct: 175 AMLKHNPYVFTCSIHCEKNFPFRKHSSDLDIGLTNNLKDADYLQIVEDTLTGLLEDVNPD 234
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
+++Y+AG D+ +D LG L IS +G+ +RD LV ++ VP+ + GGY K R+
Sbjct: 235 LVLYDAGVDIWEHDGLGKLDISWRGLEQRDALVLKTCQQAGVPVATVIGGGYDKDHLRL 293
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL+ LAL+ G + ++ GG HHA G G+C D+ L ++ +I DL
Sbjct: 106 GTLKTAELALQTGVACHLAGGTHHAHYDFGSGYCMVNDLVFTSTTLIAQGKVNNVLIFDL 165
Query: 64 DAHQ 67
D HQ
Sbjct: 166 DVHQ 169
>gi|116072402|ref|ZP_01469669.1| putative histone deacetylase/AcuC/AphA family protein
[Synechococcus sp. BL107]
gi|116064924|gb|EAU70683.1| putative histone deacetylase/AcuC/AphA family protein
[Synechococcus sp. BL107]
Length = 283
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 117/259 (45%), Gaps = 9/259 (3%)
Query: 145 WKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAV 204
+K + L++ I + I P +S L H +Y ++ L A
Sbjct: 4 FKLLHQLLLDQGLIERKQIYVPLSISRRDLEEIHPRRYHETFSRDQLTRPEQRRIGLPAT 63
Query: 205 PNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLL 264
+ VQ+ +L VGGTL LALR G + ++ GG HHA G GFC + D ++
Sbjct: 64 -SALVQRTWLA-----VGGTLLTARLALRYGLANHLAGGTHHAHPEFGSGFCIFNDCAVA 117
Query: 265 VKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIEL 321
++L Q + +IVDLD HQG+G F + R+ S K I L
Sbjct: 118 ARVLLQRHEVEKILIVDLDVHQGDGSAACFQADERVTTFSVHAASNFPLRKVNSDIDIPL 177
Query: 322 APYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV 381
TEDQ YL I L L P ++++NAG D +D LG L +S G++ RD LV
Sbjct: 178 PDGTEDQDYLAAIGDQLPDVLDQLRPQLVLFNAGVDPHRDDRLGRLHLSNDGLLMRDRLV 237
Query: 382 FMKARERRVPIVMLTSGGY 400
R++P+ + GGY
Sbjct: 238 LDACLRRKIPVATVIGGGY 256
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL LALR G + ++ GG HHA G GFC + D ++ ++L Q + +IVDL
Sbjct: 76 GTLLTARLALRYGLANHLAGGTHHAHPEFGSGFCIFNDCAVAARVLLQRHEVEKILIVDL 135
Query: 64 DAHQ 67
D HQ
Sbjct: 136 DVHQ 139
>gi|441495684|ref|ZP_20977924.1| Deacetylase [Fulvivirga imtechensis AK7]
gi|441440649|gb|ELR73901.1| Deacetylase [Fulvivirga imtechensis AK7]
Length = 300
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 93/191 (48%), Gaps = 3/191 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
V GT AL G S+NI GG HHA +G GFC D+++ L + +IV
Sbjct: 95 VHGTTLCARYALTHGVSMNIAGGTHHAFTNRGEGFCLLNDMAVAAHFLLDQQLAGKILIV 154
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAG 337
DLD HQGNG + F N+ R+F KE I L +D YL+ +E
Sbjct: 155 DLDVHQGNGTAQIFRNDARVFTFSMHGARNYPMQKEISDLDIGLPDGADDHFYLKILEVN 214
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L+ L PD I + +G D+L D LG LAIS G +RD++V ++E +P+V
Sbjct: 215 LKNLLHEVEPDFIFFQSGVDILATDKLGRLAISRDGCRQRDKMVLQLSKENNIPLVASMG 274
Query: 398 GGYLKQTARII 408
GGY I+
Sbjct: 275 GGYSTNIKDIV 285
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%)
Query: 3 YGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 62
+GT AL G S+NI GG HHA +G GFC D+++ L + +IVD
Sbjct: 96 HGTTLCARYALTHGVSMNIAGGTHHAFTNRGEGFCLLNDMAVAAHFLLDQQLAGKILIVD 155
Query: 63 LDAHQ 67
LD HQ
Sbjct: 156 LDVHQ 160
>gi|383768053|ref|YP_005447036.1| putative deacetylase [Phycisphaera mikurensis NBRC 102666]
gi|381388323|dbj|BAM05139.1| putative deacetylase [Phycisphaera mikurensis NBRC 102666]
Length = 315
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 124/283 (43%), Gaps = 49/283 (17%)
Query: 145 WKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKS---------------LKWS 189
+ H+ ++L + N+ P+ + E L AH Y + L WS
Sbjct: 15 FGHLHDHLAAVGLLGPGNLHRPEPAAVETLGRAHDPAYADAFLSGRLDRDALRTLGLPWS 74
Query: 190 FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASE 249
+AA + +GGT+ A LALR G + N+ GG HHA
Sbjct: 75 AGLAARTVTA---------------------LGGTVLAARLALRHGLAANLAGGTHHAHR 113
Query: 250 TKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET-CIT 308
G GFC + D+++ L + ++ +IVDLD HQG+G + +E R F + C +
Sbjct: 114 GHGAGFCIFNDLAVAALTLLEEDAVDQVLIVDLDVHQGDGTARILRHEPRAFTLSVHCAS 173
Query: 309 SKAKEAIRCRIELAPYTE---DQHYLEKIEAGLERS--------LRSFCPDIIVYNAGTD 357
+ R +++ P + D YL + G E S L PD+++Y+AG D
Sbjct: 174 NYPARKARSDLDV-PLPDGLGDAGYLRVLGHGDEASGFRGLGWLLEQVEPDLVLYDAGVD 232
Query: 358 VLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
V +D LG LA++ G+ RD V R + VP+ + GGY
Sbjct: 233 VHADDKLGRLAMTDAGLRERDRAVLEACRGQGVPVACVIGGGY 275
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LALR G + N+ GG HHA G GFC + D+++ L + ++ +IVDL
Sbjct: 87 GTVLAARLALRHGLAANLAGGTHHAHRGHGAGFCIFNDLAVAALTLLEEDAVDQVLIVDL 146
Query: 64 DAHQ 67
D HQ
Sbjct: 147 DVHQ 150
>gi|384430533|ref|YP_005639893.1| histone deacetylase [Thermus thermophilus SG0.5JP17-16]
gi|333966001|gb|AEG32766.1| Histone deacetylase [Thermus thermophilus SG0.5JP17-16]
Length = 294
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 123/242 (50%), Gaps = 11/242 (4%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
++ EV E L +AH YL+ L F E + +P + LR + G
Sbjct: 37 VLPAPEVPREALFLAHEASYLEKL---FGEGLTREESLRLGLP---FSQALLRRALHAAG 90
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST-AMIVD 281
GTL A AL+ G +N+ GG HHA + G+ + D+++ + L + S ++VD
Sbjct: 91 GTLAAALDALKTGLGLNLSGGTHHAFPGRAEGYSLFNDVAVAIFWLRAKEGFSGRVLVVD 150
Query: 282 LDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGL 338
LDAHQGNG F + +F + KE + L T D+ YL +E L
Sbjct: 151 LDAHQGNGTAFFFREDPSVFTLSLHGERNYPLRKEKSDLDVGLPDGTGDEAYLWALEEAL 210
Query: 339 ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSG 398
E++ R+F PD++ YNAG DVL D G LA+SP+G+ RRDE VF + VP+V++ G
Sbjct: 211 EKA-RAFRPDLVFYNAGVDVLRGDRFGRLALSPEGVRRRDERVFRFVKALGVPLVVVMGG 269
Query: 399 GY 400
GY
Sbjct: 270 GY 271
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS-TAMIVDLDAHQFSD 70
AL+ G +N+ GG HHA + G+ + D+++ + L + S ++VDLDAHQ +
Sbjct: 99 ALKTGLGLNLSGGTHHAFPGRAEGYSLFNDVAVAIFWLRAKEGFSGRVLVVDLDAHQGNG 158
Query: 71 YYF-----PSAH--SIKRKRKVEFLKERKALE 95
F PS S+ +R KE+ L+
Sbjct: 159 TAFFFREDPSVFTLSLHGERNYPLRKEKSDLD 190
>gi|390445539|ref|ZP_10233279.1| histone deacetylase superfamily protein [Nitritalea halalkaliphila
LW7]
gi|389661825|gb|EIM73419.1| histone deacetylase superfamily protein [Nitritalea halalkaliphila
LW7]
Length = 300
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 118/252 (46%), Gaps = 13/252 (5%)
Query: 162 NIIEPQEVSEEQLLIAHTEKYLKSLK-WSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH 220
N P+ ++++ +L AH Y LK S + + I F L H
Sbjct: 42 NFFSPEALADDWILKAHDPSYFNRLKGLSLSKSEIRRTG--------FPLSQQLVDREVH 93
Query: 221 V-GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMI 279
+ G+++A A G ++NI GG HHA + +G GFC D+++ L + K +I
Sbjct: 94 IMHGSVQAALYAKEFGIAMNIAGGTHHAFKDRGEGFCLLNDLAITAFYLLEKKLARKILI 153
Query: 280 VDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEA 336
+DLD HQGNG F +F + KE I L T+D YL +
Sbjct: 154 IDLDVHQGNGTAAIFAEVPEVFTFSMHGEANYPMHKEKSDLDIGLKDKTDDATYLSLLRE 213
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
L R + + PD ++Y G DVL +D LG L +S QG RD +V AR+ R+PI+
Sbjct: 214 TLPRLIDAEEPDFLLYQCGVDVLASDKLGRLGMSIQGCKERDRIVLETARKNRLPIMCCM 273
Query: 397 SGGYLKQTARII 408
GGY ++ A II
Sbjct: 274 GGGYSEKIAHII 285
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 3 YGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 62
+G+++A A G ++NI GG HHA + +G GFC D+++ L + K +I+D
Sbjct: 96 HGSVQAALYAKEFGIAMNIAGGTHHAFKDRGEGFCLLNDLAITAFYLLEKKLARKILIID 155
Query: 63 LDAHQ 67
LD HQ
Sbjct: 156 LDVHQ 160
>gi|302384114|ref|YP_003819937.1| histone deacetylase [Brevundimonas subvibrioides ATCC 15264]
gi|302194742|gb|ADL02314.1| Histone deacetylase [Brevundimonas subvibrioides ATCC 15264]
Length = 313
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 135/306 (44%), Gaps = 26/306 (8%)
Query: 108 TRPWP-IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEP 166
RP P +VY P Y+ L H F K+ + L + + + + P
Sbjct: 4 ARPLPPVVYHPAYS---MALPPGHRFPMLKYARLAQVLE--------DEGLVGPEGLYTP 52
Query: 167 QEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLE 226
+ S + L H Y++ + + A EV ++ +P V + ++ VGGTL
Sbjct: 53 EPASFDMLAAVHDPGYVRQV---LDAAVPPEVERVIGLP---VTREVSDRVQAAVGGTLM 106
Query: 227 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 286
A LALR G + N GG HHA G GFC + DI++ + + + I A++VDLD HQ
Sbjct: 107 AARLALRHGLACNTAGGSHHAGPKGGAGFCVFNDIAVAGRAMIDAGEIRQALVVDLDVHQ 166
Query: 287 GNGYEKDFMNETRIFIMETCITSKAKEAIR-----CRIELAPYTEDQHYLEKIEAGLERS 341
G+G F +E R+F + + +R I+L T D YL + + L
Sbjct: 167 GDGTASIFEHEPRVFTFS--MHGEKNYPVRRGPSDLDIDLPDCTGDDAYLAALRSVLPGL 224
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYL 401
L PD++ Y AG D D LG L +S +G+ RD V P+V + GGY
Sbjct: 225 LDRVEPDLVFYLAGVDPHGEDRLGRLGLSNEGLSARDAYVLETCLP-AAPVVGVIGGGYD 283
Query: 402 KQTARI 407
R+
Sbjct: 284 DDIDRL 289
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL A LALR G + N GG HHA G GFC + DI++ + + + I A++VDL
Sbjct: 103 GTLMAARLALRHGLACNTAGGSHHAGPKGGAGFCVFNDIAVAGRAMIDAGEIRQALVVDL 162
Query: 64 DAHQ 67
D HQ
Sbjct: 163 DVHQ 166
>gi|81300202|ref|YP_400410.1| histone deacetylase/AcuC/AphA family protein-like protein
[Synechococcus elongatus PCC 7942]
gi|81169083|gb|ABB57423.1| histone deacetylase/AcuC/AphA family protein-like [Synechococcus
elongatus PCC 7942]
Length = 304
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 137/297 (46%), Gaps = 26/297 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ L H F K++ + + L + + + +P
Sbjct: 4 PLVYHPGYSA---PLPSTHRFPMAKFRLLHDRLLRE--------RVVYPQQFHQPDRPPL 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISE-VCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAG 228
E L H+ Y+++ ++ + E + +P V++ ++ VGGT+
Sbjct: 53 EWLTSVHSLDYIQA----YSQGTLDERSLRRIGLPWSPALVERTWIA-----VGGTILTA 103
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
LAL++G + N+ GG HHA G GFC + D ++ +LL Q + + +IVDLD HQG+
Sbjct: 104 RLALQQGLACNLAGGTHHAFPDYGSGFCIFNDCAIAARLLLQERLVERILIVDLDVHQGD 163
Query: 289 GYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
G F ++ R+F + K+ C + L ED YL+++ L L
Sbjct: 164 GTAWIFQDDPRVFTFSMHCEANFPARKQHSDCDVPLPEGMEDDAYLQQLAQYLPDLLSQV 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402
P++++YNAG D D LG LA++ G+ RR+ V + P+ + GGY +
Sbjct: 224 RPNLVIYNAGVDPHGGDRLGKLALTDTGLFRREMQVLETCVRQGYPVAAVLGGGYCE 280
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL++G + N+ GG HHA G GFC + D ++ +LL Q + + +IVDL
Sbjct: 98 GTILTARLALQQGLACNLAGGTHHAFPDYGSGFCIFNDCAIAARLLLQERLVERILIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|295136397|ref|YP_003587073.1| histone deacetylase [Zunongwangia profunda SM-A87]
gi|294984412|gb|ADF54877.1| histone deacetylase family protein [Zunongwangia profunda SM-A87]
Length = 279
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 119/253 (47%), Gaps = 11/253 (4%)
Query: 160 QDNIIEPQEVSEEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
Q + EP+ E +L HT++Y+++L + + AI + P Q+ R +
Sbjct: 19 QQHFFEPKPADLEDILAVHTKEYVENLTNLTLDRRAIRKT----GFP--LSQELVDREII 72
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
GGTLE AL G S+NI GG HHA G FC D ++ + L + K +
Sbjct: 73 I-AGGTLEGCQYALENGISMNIAGGTHHAYSDHGEAFCLLHDQAIAARYLQKKKLAEKIL 131
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIE 335
I+DLD HQGNG + F N+ +F KE IE+ ++D++YLE ++
Sbjct: 132 IIDLDVHQGNGTAEIFQNDNSVFTFSMHGKGNYPFRKEISDLDIEVPDGSKDEYYLETLK 191
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
L + PD I Y G D+L D LG LA S +G RD V R+ ++P+
Sbjct: 192 EILPDLIEKVQPDFIFYLCGVDILETDKLGRLACSIEGCKERDRFVLQTCRDLKIPVQCS 251
Query: 396 TSGGYLKQTARII 408
GGY + II
Sbjct: 252 MGGGYSPEIKIII 264
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTLE AL G S+NI GG HHA G FC D ++ + L + K +I+DL
Sbjct: 76 GTLEGCQYALENGISMNIAGGTHHAYSDHGEAFCLLHDQAIAARYLQKKKLAEKILIIDL 135
Query: 64 DAHQ 67
D HQ
Sbjct: 136 DVHQ 139
>gi|327405255|ref|YP_004346093.1| Histone deacetylase [Fluviicola taffensis DSM 16823]
gi|327320763|gb|AEA45255.1| Histone deacetylase [Fluviicola taffensis DSM 16823]
Length = 302
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 136/301 (45%), Gaps = 24/301 (7%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
+ Y P Y +H + H F +K+ I+ L ++ ++E + N+++ + S+
Sbjct: 5 VAYHPSY-IH--AVPSTHRFPMEKYGLIYEQL---LYEGILEEAHFLEPNLLDLKIASK- 57
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
HT++YL L + V V Q+ R R G L A +
Sbjct: 58 ----VHTKEYLTKLVNLNCTSREQRVSGFV-----HNQQLIEREFRIMEGTRLCAERVE- 107
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
G ++NI GG HHA +G GFC D ++ + L + +IVDLD HQGNG +
Sbjct: 108 NGGIALNIAGGTHHAYTNRGEGFCLLNDQAIAAQWLLDEQLFKRILIVDLDVHQGNGTAE 167
Query: 293 DFMNETRIFIMETCITSKA-----KEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
F N +F + KA KE I L +D+ YL +++ L L SF P
Sbjct: 168 IFKNNPNVFTF--SMHGKANYPMHKEESDRDIHLETNLKDKDYLNILKSELTAILDSFSP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D I Y G D+L D LG L++S GI RDE V K +ER +PIV GGY I
Sbjct: 226 DFIFYQCGVDILETDKLGKLSVSQNGIRLRDEFVLNKGKERNIPIVCSMGGGYSTNVRDI 285
Query: 408 I 408
+
Sbjct: 286 V 286
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 2 EYGTLEAGFLALRR----GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST 57
E+ +E L R G ++NI GG HHA +G GFC D ++ + L +
Sbjct: 92 EFRIMEGTRLCAERVENGGIALNIAGGTHHAYTNRGEGFCLLNDQAIAAQWLLDEQLFKR 151
Query: 58 AMIVDLDAHQ 67
+IVDLD HQ
Sbjct: 152 ILIVDLDVHQ 161
>gi|148240071|ref|YP_001225458.1| histone deacetylase family protein [Synechococcus sp. WH 7803]
gi|147848610|emb|CAK24161.1| Histone deacetylase family protein [Synechococcus sp. WH 7803]
Length = 304
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 132/293 (45%), Gaps = 22/293 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY Y+ L H F K++ + L+ E + P V
Sbjct: 4 PLVYHEAYSA---PLPSSHRFPMAKFRELERCLF--------ECGLAHAGQMHRPLPVPR 52
Query: 172 EQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
L + H Y ++ + + A + P VQ+ +L VGGT+ L
Sbjct: 53 RWLELVHQRSYHEAFARDRLDRQAQRRIGLPATTP--LVQRTWLA-----VGGTVLTARL 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
ALR G + ++ GG HHA G GFC + D+++ ++L + + + ++VDLD HQG+
Sbjct: 106 ALRHGLACHLAGGTHHAFPNFGSGFCIFNDLAVCARVLIEQEGLQRVLVVDLDVHQGDAT 165
Query: 291 EKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
F + R+F + S K+ + L+ ED+ YL+ + L L P
Sbjct: 166 ALIFSGDARVFTLSAHAASNFPSRKQVSDLDLPLSDGLEDRAYLQTVGDHLPDVLDRLRP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
+++YNAG D +D LG LA++ G+++RD LV R VP+ + GGY
Sbjct: 226 QLVLYNAGVDPHRDDRLGRLALTDLGLLQRDHLVLDACLRRGVPVATVIGGGY 278
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LALR G + ++ GG HHA G GFC + D+++ ++L + + + ++VDL
Sbjct: 98 GTVLTARLALRHGLACHLAGGTHHAFPNFGSGFCIFNDLAVCARVLIEQEGLQRVLVVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|325103759|ref|YP_004273413.1| histone deacetylase [Pedobacter saltans DSM 12145]
gi|324972607|gb|ADY51591.1| Histone deacetylase [Pedobacter saltans DSM 12145]
Length = 300
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 125/263 (47%), Gaps = 15/263 (5%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKY---LKSLKWSFNVAAISEVCPLVAVPNYF 208
L+ ++N EP+ ++EE +L+ H+ +Y LKSL S++ + P
Sbjct: 32 LIRRGIAREENFFEPEILNEEIVLLTHSNEYWNKLKSLSLSYHEER------RIGFP--L 83
Query: 209 VQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLL 268
++ R +R GT+++ A+ G S N GG HHA G GFC D ++ L
Sbjct: 84 SERLVKRELRI-CRGTIDSALYAIDYGVSFNSAGGTHHAGSDWGEGFCLLNDQAIAANYL 142
Query: 269 FQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYT 325
S+ ++ +I+DLD HQGNG + F + +F KE +
Sbjct: 143 IDSQISNSILIIDLDVHQGNGTAEIFADNDAVFTFSIHGEKNFPFRKEKSDLDVASPDGI 202
Query: 326 EDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKA 385
ED+ Y + + LE+++ PD+I Y AG DVL D LG L++SP G +RD +V K
Sbjct: 203 EDEEYQDILVENLEKAICLSSPDMIFYQAGVDVLSTDKLGKLSLSPDGCKKRDYIVLNKC 262
Query: 386 RERRVPIVMLTSGGYLKQTARII 408
+ +P+ + GGY I+
Sbjct: 263 KALGLPVQISMGGGYSAHIKDIV 285
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+++ A+ G S N GG HHA G GFC D ++ L S+ ++ +I+DL
Sbjct: 97 GTIDSALYAIDYGVSFNSAGGTHHAGSDWGEGFCLLNDQAIAANYLIDSQISNSILIIDL 156
Query: 64 DAHQ-------FSDYYFPSAHSIKRKRKVEFLKERKALE----DEITSEPQESVVTR 109
D HQ F+D SI ++ F KE+ L+ D I E + ++
Sbjct: 157 DVHQGNGTAEIFADNDAVFTFSIHGEKNFPFRKEKSDLDVASPDGIEDEEYQDILVE 213
>gi|298207409|ref|YP_003715588.1| Histone deacetylase superfamily protein [Croceibacter atlanticus
HTCC2559]
gi|83850045|gb|EAP87913.1| Histone deacetylase superfamily protein [Croceibacter atlanticus
HTCC2559]
Length = 299
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 138/301 (45%), Gaps = 25/301 (8%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
I Y P Y V L + H F +K++ L K L+ DN EP SE
Sbjct: 4 IAYHPIYKV---PLPEGHRFPMEKYE----LLPKQ----LIYEGTCDPDNFFEPV-YSET 51
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGFL 230
+ + HT Y+ LK N+ + + P + V++ ++ GT++A
Sbjct: 52 FVDLVHTTNYISDLK---NLTLDARAARKIGFPLNSALVEREFII-----ADGTIKACDF 103
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G ++NI GG HHA +G GFC + D ++ + L + +I+DLD HQGNG
Sbjct: 104 ALEYGIAMNIAGGTHHAYTNRGEGFCMFNDQAIGARYLQHTNKAKQVLIIDLDVHQGNGT 163
Query: 291 EKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ F ++T +F KE+ I L +T D +YL+ ++ L + + P
Sbjct: 164 AEIFKDDTSVFTFSMHGEKNYPFKKESSDLDIALPSHTTDDNYLKLLKETLPKLISDVNP 223
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D I Y +G D+L D LG L+ S G RD V ++ +P+ + GGY K +I
Sbjct: 224 DFIFYLSGVDILETDKLGKLSCSILGCKERDRFVLQLCKDLNIPVEVSMGGGYSKDIKKI 283
Query: 408 I 408
I
Sbjct: 284 I 284
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++A AL G ++NI GG HHA +G GFC + D ++ + L + +I+DL
Sbjct: 96 GTIKACDFALEYGIAMNIAGGTHHAYTNRGEGFCMFNDQAIGARYLQHTNKAKQVLIIDL 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|157962481|ref|YP_001502515.1| histone deacetylase superfamily protein [Shewanella pealeana ATCC
700345]
gi|157847481|gb|ABV87980.1| histone deacetylase superfamily [Shewanella pealeana ATCC 700345]
Length = 304
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 134/302 (44%), Gaps = 25/302 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y Y+ L LH F K++ ++ YL +E Q I P + S
Sbjct: 3 PLIYDASYSK--LALPPLHRFPISKYRALYEYL--------LEQGIAEQPQFIAPTKASI 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E L H + Y+K + S++ + P K + Y V GT A
Sbjct: 53 EYLTALHDQSYVKDF---ISGELDSKLMRRIGFP---WSKALVERTLYSVAGTALTCEQA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
+ G +I++ GG+HHA + G G+C + D+ L Q I T +I D D HQG+G
Sbjct: 107 ITHGCAIHLSGGYHHAHQQFGSGYCIFNDLVLAAVNSQQIDDIETVLIFDCDVHQGDGTA 166
Query: 292 KDFMNETRIFIMETCIT------SKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
+ + TC K+ IEL T D Y+E +E L +R
Sbjct: 167 TIAQSLNHVI---TCSIHCHQNFPARKQQSDYDIELDKGTSDIEYVETVEQTLAYLIRLH 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PD+I+Y+AG D+ +D LG L IS GI RD V +A+ ++PI + GGY + +
Sbjct: 224 KPDLIIYDAGVDIHSDDNLGYLNISTDGIYARDLEVIHQAKTAQIPIACVIGGGYSRDST 283
Query: 406 RI 407
++
Sbjct: 284 QL 285
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
A+ G +I++ GG+HHA + G G+C + D+ L Q I T +I D D HQ
Sbjct: 106 AITHGCAIHLSGGYHHAHQQFGSGYCIFNDLVLAAVNSQQIDDIETVLIFDCDVHQ 161
>gi|254502902|ref|ZP_05115053.1| Histone deacetylase family, putative [Labrenzia alexandrii DFL-11]
gi|222438973|gb|EEE45652.1| Histone deacetylase family, putative [Labrenzia alexandrii DFL-11]
Length = 313
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 130/295 (44%), Gaps = 26/295 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAK-FITQDNIIEPQEVS 170
PIV+ P Y L H F K++ + + L+ A+ + + P+
Sbjct: 4 PIVHHPAYCA---DLPANHRFPMDKFRAVAD---------LIRAEGLLGSGDFYRPRPAP 51
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
E + +AH Y+ + FN ++ + P LR R GG++ G+L
Sbjct: 52 FEWVALAHDPVYVDQV---FNAEVPQKIAREIGFP--MRADIALR-ARCATGGSVLTGYL 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G + N GG HHA G GFC + D+++ +K+L +I A+++DLD HQG+G
Sbjct: 106 ALEHGLACNTAGGSHHARRAHGAGFCVFNDVAVALKVLQADGAIRKALVIDLDVHQGDGT 165
Query: 291 EKDFMNETRIFIMETCITSKAKEAIR-----CRIELAPYTEDQHYLEKIEAGLERSLRSF 345
F + IF + S +R + L ED YL ++ L LR
Sbjct: 166 ADIFSGDPDIFTFS--MHSAKNYPVRKVPSHLDLALPDAMEDAAYLTALQEVLPDLLRQE 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
D++ YNAG D D LG LA+S G+ RD V R VP+ + GGY
Sbjct: 224 AWDLVFYNAGVDPYFEDRLGRLALSRDGLKTRDRYVIETVRSLGVPLAGVLGGGY 278
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ G+LAL G + N GG HHA G GFC + D+++ +K+L +I A+++DL
Sbjct: 98 GSVLTGYLALEHGLACNTAGGSHHARRAHGAGFCVFNDVAVALKVLQADGAIRKALVIDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|430808555|ref|ZP_19435670.1| histone deacetylase superfamily protein [Cupriavidus sp. HMR-1]
gi|429499064|gb|EKZ97519.1| histone deacetylase superfamily protein [Cupriavidus sp. HMR-1]
Length = 307
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 135/298 (45%), Gaps = 26/298 (8%)
Query: 119 YNVHF-FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIA 177
Y HF L H F +K+ + + + + + VE + E +E L +
Sbjct: 5 YADHFVLPLPPGHRFPMRKYSMLRDAVVREVGG--VELR--------EAPRADDETLALV 54
Query: 178 HTEKYLKSLK-WSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGFLALRR 234
HT Y++ + +VA E+ P + V++ R G T+ A +AL +
Sbjct: 55 HTAAYIEEVSTGQLDVARQREI----GFPWSHEMVERS-----RRSAGATIAACRVALEQ 105
Query: 235 GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF 294
G + N+ GG HHA KG GFC + D ++ + L + S+ ++DLD HQGNG
Sbjct: 106 GIAANLAGGTHHAYADKGAGFCVFNDAAIAARRLQRDGSVRRVAVIDLDVHQGNGTASIL 165
Query: 295 MNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIV 351
++ IF + KEA + L +D Y + + L+ F PD+++
Sbjct: 166 RDDPTIFTLSLHGEKNYPFRKEASDLDVGLPDGCDDGAYAVALASALDTLFARFDPDLLI 225
Query: 352 YNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIA 409
Y AG D D LG L ++ G+ RRD +VF AR R +P+ + +GGY Q +A
Sbjct: 226 YLAGADPHEGDRLGRLKLTMAGLARRDTMVFEAARSRGLPVAVAMAGGYGNQIEDTVA 283
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
T+ A +AL +G + N+ GG HHA KG GFC + D ++ + L + S+ ++DLD
Sbjct: 95 TIAACRVALEQGIAANLAGGTHHAYADKGAGFCVFNDAAIAARRLQRDGSVRRVAVIDLD 154
Query: 65 AHQ 67
HQ
Sbjct: 155 VHQ 157
>gi|328949949|ref|YP_004367284.1| histone deacetylase [Marinithermus hydrothermalis DSM 14884]
gi|328450273|gb|AEB11174.1| Histone deacetylase [Marinithermus hydrothermalis DSM 14884]
Length = 294
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 134/312 (42%), Gaps = 29/312 (9%)
Query: 117 PEYNVHFFKLE--KLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQL 174
P Y F LE HPF K+ + L + I P V L
Sbjct: 3 PAYTTAPFPLELPPHHPFPLYKYPGVAEALRDRL-------------AIRTPPAVDWGTL 49
Query: 175 LIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRR 234
+AH YL L+ L P L R VGGTL A AL
Sbjct: 50 ALAHRPAYLMRLRQEGLQRQEELRLGLRYTP------ALLERARRSVGGTLAATQDALIH 103
Query: 235 GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF 294
G +N+ GG HHA + G+ + D+++ V+ L ++VDLDAHQGNG F
Sbjct: 104 GLGLNLAGGTHHAYPDRAEGYSLFNDVAVAVRWLRAQGFRGRVLVVDLDAHQGNGTAVFF 163
Query: 295 MNETRIFIMETCITS---KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIV 351
++ +F + + + KE + L T D YLE +E LE + +F P+++
Sbjct: 164 QDDPTVFTLSVHAANNYPRHKEQSDLDVPLPDRTPDAAYLEALEPALEEAF-AFRPELVF 222
Query: 352 YNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADS 411
YNAG DVL D G LA+S +G+ RD+ V + R+ +V++ GGY + +A
Sbjct: 223 YNAGVDVLAGDRFGRLALSLEGVRARDQAVLARVRQVGARLVVVMGGGYNRNPDLTVAAH 282
Query: 412 I----LNLADLG 419
L LA LG
Sbjct: 283 AQTYRLALAALG 294
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL A AL G +N+ GG HHA + G+ + D+++ V+ L ++VDL
Sbjct: 92 GTLAATQDALIHGLGLNLAGGTHHAYPDRAEGYSLFNDVAVAVRWLRAQGFRGRVLVVDL 151
Query: 64 DAHQ 67
DAHQ
Sbjct: 152 DAHQ 155
>gi|113970809|ref|YP_734602.1| histone deacetylase superfamily protein [Shewanella sp. MR-4]
gi|113885493|gb|ABI39545.1| histone deacetylase superfamily [Shewanella sp. MR-4]
Length = 300
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 137/295 (46%), Gaps = 25/295 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY Y+ L H F + K+ ++ YL + V A+F T P ++
Sbjct: 3 PLVYHASYSK--LALPSHHRFPTTKYARLYQYLLDN--QLAVPAQFHT------PSPMTA 52
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
E ++ H + Y++ ++ S A+ + + + + + V GT L
Sbjct: 53 EDVMQVHQQDYVEQFIQGSLASTALRRI-------GFPWSEALVERTLHSVSGTSLTAHL 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL+ G ++++ GG+HHA G G+C + D+ + + L + + +I D D HQG+G
Sbjct: 106 ALQTGIALHLTGGYHHAHYDFGSGYCIFNDLIIAARKLMAEQQLHKVLIFDCDVHQGDGT 165
Query: 291 EKDFMNETRIFIMETCITSKA-----KEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
++ I+ I K K+ IEL +D Y E +E LE +R
Sbjct: 166 AT--LSHRHQGIISCSIHCKENFPSRKQQSHYDIELTKGADDNAYQETVEQTLELLIRLH 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
PD+I+Y+AG D+ +D LG L IS QG+ +RD V A+ +P+ + GGY
Sbjct: 224 QPDLILYDAGVDIHQDDDLGHLKISKQGLYQRDLTVLSMAKAANIPVAAVIGGGY 278
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LAL+ G ++++ GG+HHA G G+C + D+ + + L + + +I D
Sbjct: 98 GTSLTAHLALQTGIALHLTGGYHHAHYDFGSGYCIFNDLIIAARKLMAEQQLHKVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|156094402|ref|XP_001613238.1| histone deacetylase [Plasmodium vivax Sal-1]
gi|148802112|gb|EDL43511.1| histone deacetylase, putative [Plasmodium vivax]
Length = 369
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 142/304 (46%), Gaps = 27/304 (8%)
Query: 105 SVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNII 164
S +++ P V+ P Y+ K EK H F KK++ IF+ L +E D I
Sbjct: 69 SSLSKNPPYVFHPIYSSVPMK-EKYHRFKIKKYEKIFSRL--------IEEGIYNADYAI 119
Query: 165 EPQEVSEE--QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
+SE L H E +++ + E L PN + +
Sbjct: 120 PSCNISETIISLCSIHDEAFVEEIFSIVTRNEQVEKYELTLHPNLVCR------FLIEIN 173
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
GT+ + LA++ ++IGGG HH+ +G GFC + D+++ V L I A+I+D+
Sbjct: 174 GTILSSLLAMKHFMCMHIGGGNHHSKRNRGDGFCIFNDVAIAVHFLLSHGLIDKAIILDV 233
Query: 283 DAHQGNGYEKDFMNETRIFIMET-CITS----KAKEAIRCRIELAPYTEDQHYLEKIEAG 337
D HQG+G + F N + + C + KA I +E +T D YLE +
Sbjct: 234 DVHQGDGTAEIFRNCANVKTISLHCRDNFPPVKAHSTI--DVEFDSFTTDGDYLEAYKKV 291
Query: 338 LER-SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
L+ + C II Y AG D+ +D LG L++S GI +RD + + A +R +P+V +
Sbjct: 292 LDDIAAEQNC--IIFYLAGVDISADDDLGFLSVSDVGIYQRDLMTYQMAHQRGIPVVTVL 349
Query: 397 SGGY 400
SGGY
Sbjct: 350 SGGY 353
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ + LA++ ++IGGG HH+ +G GFC + D+++ V L I A+I+D+
Sbjct: 174 GTILSSLLAMKHFMCMHIGGGNHHSKRNRGDGFCIFNDVAIAVHFLLSHGLIDKAIILDV 233
Query: 64 DAHQ 67
D HQ
Sbjct: 234 DVHQ 237
>gi|331005118|ref|ZP_08328521.1| putative histone deacetylase family protein [gamma proteobacterium
IMCC1989]
gi|330421087|gb|EGG95350.1| putative histone deacetylase family protein [gamma proteobacterium
IMCC1989]
Length = 223
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 101/181 (55%), Gaps = 3/181 (1%)
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
GT LAL+ G + ++ GG HHA GFC + D+++ K L ++ +I D
Sbjct: 19 GTFLTAQLALKHGIACHLAGGTHHAHVDFASGFCIFNDLAITAKALLAQGKVNKILIFDC 78
Query: 283 DAHQGNGYEKDFMNETRIFIMETCITSK--AKEAIR-CRIELAPYTEDQHYLEKIEAGLE 339
D HQG+G +E R + AK+A+ + L P T D+ YL+ +++ L+
Sbjct: 79 DVHQGDGTASILQHEKRAYTCSIHCEKNFPAKKALSDFDVGLPPGTSDKEYLDCVQSTLD 138
Query: 340 RSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGG 399
++++ PD+I+Y+AG D+ +DPLGLL I+ QGI RD++V +++ +PI + GG
Sbjct: 139 VAIKNQQPDLILYDAGVDIYQHDPLGLLNITLQGIRLRDKMVLETSKKNNIPIATVIGGG 198
Query: 400 Y 400
Y
Sbjct: 199 Y 199
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LAL+ G + ++ GG HHA GFC + D+++ K L ++ +I D
Sbjct: 19 GTFLTAQLALKHGIACHLAGGTHHAHVDFASGFCIFNDLAITAKALLAQGKVNKILIFDC 78
Query: 64 DAHQ 67
D HQ
Sbjct: 79 DVHQ 82
>gi|386827004|ref|ZP_10114111.1| deacetylase, histone deacetylase/acetoin utilization protein
[Beggiatoa alba B18LD]
gi|386427888|gb|EIJ41716.1| deacetylase, histone deacetylase/acetoin utilization protein
[Beggiatoa alba B18LD]
Length = 307
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 123/254 (48%), Gaps = 9/254 (3%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQK 211
LV+ I+ + P + EQL+ AHT Y++ + F + ++ P
Sbjct: 41 LVDNSIISPAYLQIPPAATLEQLIYAHTPDYIQRV---FAGELTEQEIKIIGFP---WST 94
Query: 212 CYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS 271
+ R G T++A + AL++G ++++ GG HHA G G+C + D ++ +LL +
Sbjct: 95 AMVERSRRSCGATIQACYSALKQGIAVSLAGGTHHAYADHGQGYCVFNDSAVSARLLKIT 154
Query: 272 KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQ 328
+ +I+D D HQGNG ++ +F KE IEL+ T D
Sbjct: 155 GWVKQVVIIDCDVHQGNGTAHILADDNDLFTFSIHGAKNFPFRKEKSNLDIELSDNTGDD 214
Query: 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER 388
YL+ +E L+ + PD+++Y AG D ND LG LA++ G+ RD L+ R
Sbjct: 215 VYLKALEQRLKAVFQQINPDLVIYLAGADPYQNDRLGRLALTKAGLESRDMLILEWCRRL 274
Query: 389 RVPIVMLTSGGYLK 402
++P+ + +GGY K
Sbjct: 275 QIPVAITMAGGYGK 288
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
T++A + AL++G ++++ GG HHA G G+C + D ++ +LL + + +I+D
Sbjct: 106 ATIQACYSALKQGIAVSLAGGTHHAYADHGQGYCVFNDSAVSARLLKITGWVKQVVIIDC 165
Query: 64 DAHQ-------FSDYYFPSAHSIKRKRKVEFLKERKALEDEITSEPQESV 106
D HQ +D SI + F KE+ L+ E++ + V
Sbjct: 166 DVHQGNGTAHILADDNDLFTFSIHGAKNFPFRKEKSNLDIELSDNTGDDV 215
>gi|383763016|ref|YP_005441998.1| acetoin utilization protein AcuC [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381383284|dbj|BAM00101.1| acetoin utilization protein AcuC [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 303
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 133/297 (44%), Gaps = 22/297 (7%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
+PI+Y P+ H L + H F K+ ++ +L + + D PQ +
Sbjct: 3 FPILYSPD---HVAPLPEGHRFPMAKFGKVYEWL--------IRDGVASLDQFHLPQPAT 51
Query: 171 EEQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
E QL +AH Y+++ L+ + + + + + + +R +G T+ A
Sbjct: 52 EAQLALAHNPAYIRAYLEGTLDARSRRRI-------GFPWSERLVRRTLTALGSTVLAAE 104
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL G + + GG HHA G G+C + D+++ + + +IVDLD HQG+G
Sbjct: 105 LALTHGLACSTAGGTHHAFHDFGSGYCIFNDLAVAARWVKAQGLARRVLIVDLDVHQGDG 164
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
N+ + + KE + L ED+ YL + L L
Sbjct: 165 TASILQNDPDLVTFSMHCEANFPFHKERSDYDVALPAGMEDEEYLAVLAQWLPDLLMQVR 224
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD+++Y+AG D +D LG LA+S QG+ RRD V + R VP+ + GGY K
Sbjct: 225 PDLVLYDAGVDPHRDDALGKLALSDQGLFRRDRFVLEQCLRRGVPVAAVIGGGYSKD 281
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
T+ A LAL G + + GG HHA G G+C + D+++ + + +IVDLD
Sbjct: 99 TVLAAELALTHGLACSTAGGTHHAFHDFGSGYCIFNDLAVAARWVKAQGLARRVLIVDLD 158
Query: 65 AHQ 67
HQ
Sbjct: 159 VHQ 161
>gi|421092686|ref|ZP_15553418.1| histone deacetylase family protein [Leptospira borgpetersenii str.
200801926]
gi|410364537|gb|EKP15558.1| histone deacetylase family protein [Leptospira borgpetersenii str.
200801926]
gi|456889867|gb|EMG00737.1| histone deacetylase family protein [Leptospira borgpetersenii str.
200701203]
Length = 270
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 118/243 (48%), Gaps = 9/243 (3%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
+ P+ ++ L + HT+++LK F I+E +P + K ++ VG
Sbjct: 17 VYRPEPAKDKDLALVHTKEFLKD----FFSLKITERTQYSELP---LTKQIVQSFVLAVG 69
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
GT+ A L + + +IGGGFHH+ + GFC D ++ VKL ++ + +DL
Sbjct: 70 GTILATELTQKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIAVKLYQRTYPGRKILFIDL 129
Query: 283 DAHQGNGYEKDFMNETRIFI--METCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLER 340
D HQGNG F ++ +F M KE I L TED YLE + L +
Sbjct: 130 DLHQGNGNSVVFQEDSDVFTFSMHQENLYPKKEKSGLDIPLEEGTEDGKYLELLTESLHK 189
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
F PD+I Y AG D D LG L ++ QG+ +RD++V R VP V+L +GGY
Sbjct: 190 IKSDFKPDLIFYIAGADPFEGDSLGDLKLTLQGLRKRDKIVRDFVRALDVPAVILPAGGY 249
Query: 401 LKQ 403
K
Sbjct: 250 AKD 252
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A L + + +IGGGFHH+ + GFC D ++ VKL ++ + +DL
Sbjct: 70 GTILATELTQKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIAVKLYQRTYPGRKILFIDL 129
Query: 64 DAHQ 67
D HQ
Sbjct: 130 DLHQ 133
>gi|294084024|ref|YP_003550781.1| histone deacetylase superfamily protein [Candidatus
Puniceispirillum marinum IMCC1322]
gi|292663596|gb|ADE38697.1| histone deacetylase superfamily [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 304
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 141/302 (46%), Gaps = 24/302 (7%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
IV P+Y++ L H F S+K F L H+ + A+F P + E
Sbjct: 4 IVSHPDYDI---PLADGHRFPSRK----FTRLISHLDAEGILAEFTHA----TPIPATIE 52
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAV--PNYFVQKCYLRPMRYHVGGTLEAGFL 230
L H Y+ S+ + + +E ++ ++ +L P GTL L
Sbjct: 53 ALSQIHDPNYVASIH---DGSITTEALRVLGFEWSEALARRSFLAP-----NGTLMTARL 104
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
A G + + GG HHA G GFC + DI+ L + I +I+D D HQG+G
Sbjct: 105 AREHGLACHAAGGTHHAHYGHGAGFCVFNDIAFTAINLLRDPGIDQVLILDCDVHQGDGT 164
Query: 291 EKDFMNETR-IFIMETCITS-KAKEAIR-CRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ M+E R + + C T+ A++AI IEL +++ YL + L + P
Sbjct: 165 ARMLMDEDRAVTVSLHCATNYPARKAISDFDIELDRGLDNEGYLAILADTLSKLAGVMRP 224
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
DI++Y+AG D+ ++D LG L ++ QG+ RD++V R +P+ + GGY K A +
Sbjct: 225 DIVIYDAGVDIHIDDRLGYLNVTDQGLRARDDMVLAHFLARDIPVATVIGGGYDKDVAAL 284
Query: 408 IA 409
I+
Sbjct: 285 IS 286
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL LA G + + GG HHA G GFC + DI+ L + I +I+D
Sbjct: 97 GTLMTARLAREHGLACHAAGGTHHAHYGHGAGFCVFNDIAFTAINLLRDPGIDQVLILDC 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|308812538|ref|XP_003083576.1| Histone deacetylase superfamily (ISS) [Ostreococcus tauri]
gi|116055457|emb|CAL58125.1| Histone deacetylase superfamily (ISS), partial [Ostreococcus tauri]
Length = 351
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 142/296 (47%), Gaps = 20/296 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEP-QEVS 170
P+V+ Y+ L + H F ++ + + L + + + + N P + +
Sbjct: 42 PVVHHDSYSAP--TLPRGHRFPMGVFQRVRDALAREGIVRVGD----SSSNAFSPSRRPT 95
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAG 228
E+L AH+E++ ++ S A + + +P + V++ + V GT+
Sbjct: 96 FEELAAAHSEEWTRTATSSEGPDA--KRLREIGLPWSDVLVERTLM-----EVSGTMLTV 148
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
+AL G ++N GG HHA T+GGGFC D++ + S +S MIVDLD HQG+
Sbjct: 149 EMALECGLAVNTAGGTHHAKGTRGGGFCILNDLATASLAVLNSGRLSRVMIVDLDVHQGD 208
Query: 289 GYEKDFMNE-TRIFIMETCITSK--AKEAIRCR-IELAPYTEDQHYLEKIEAGLERSLRS 344
G + NE R + S A++A R +EL D Y+ + + L SL
Sbjct: 209 GTAEILENEWHRCYTFSAHAASNFPARKARSTRDVELPRSMNDDEYMSVVSSALRESLED 268
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
F P++++Y+AG DV ND LG L ++ +G+ RR+ +V +P+ + GGY
Sbjct: 269 FRPELVIYDAGVDVTANDALGHLDLTFEGLYRRERMVLDTCLGSGIPVAGVVGGGY 324
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ +AL G ++N GG HHA T+GGGFC D++ + S +S MIVDL
Sbjct: 143 GTMLTVEMALECGLAVNTAGGTHHAKGTRGGGFCILNDLATASLAVLNSGRLSRVMIVDL 202
Query: 64 DAHQ 67
D HQ
Sbjct: 203 DVHQ 206
>gi|55980021|ref|YP_143318.1| deacetylase [Thermus thermophilus HB8]
gi|55771434|dbj|BAD69875.1| putative deacetylase [Thermus thermophilus HB8]
Length = 294
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 122/242 (50%), Gaps = 11/242 (4%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
++ EV E L +AH YL+ L F E + +P + LR + G
Sbjct: 37 VLPAPEVPREALFLAHEASYLEKL---FGEGLSREESLRLGLP---FSQALLRRALHAAG 90
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST-AMIVD 281
GTL A AL+ G +N+ GG HHA + G+ + D+++ + L + S ++VD
Sbjct: 91 GTLAAALDALKTGLGLNLSGGTHHAFPGRAEGYSLFNDVAVAIFWLRAKEGFSGRVLVVD 150
Query: 282 LDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGL 338
LDAHQGNG F + +F + KE + L T D+ YL +E L
Sbjct: 151 LDAHQGNGTAFFFREDPSVFTLSLHGERNYPLKKEKSDLDVGLPDGTGDEAYLWALEGAL 210
Query: 339 ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSG 398
E++ R+F PD++ YNAG DVL D G LA+SP+G+ RRDE VF + P+V++ G
Sbjct: 211 EKA-RAFRPDLVFYNAGVDVLKGDRFGRLALSPEGVRRRDERVFRFVKALGAPLVVVMGG 269
Query: 399 GY 400
GY
Sbjct: 270 GY 271
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST-AMIVDLDAHQFSD 70
AL+ G +N+ GG HHA + G+ + D+++ + L + S ++VDLDAHQ +
Sbjct: 99 ALKTGLGLNLSGGTHHAFPGRAEGYSLFNDVAVAIFWLRAKEGFSGRVLVVDLDAHQGNG 158
Query: 71 YYF-----PSAH--SIKRKRKVEFLKERKALE 95
F PS S+ +R KE+ L+
Sbjct: 159 TAFFFREDPSVFTLSLHGERNYPLKKEKSDLD 190
>gi|392538695|ref|ZP_10285832.1| histone deacetylase superfamily protein [Pseudoalteromonas marina
mano4]
Length = 299
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 126/258 (48%), Gaps = 20/258 (7%)
Query: 165 EPQEVSEEQLLIAHTEKYLKS-LKWSFNVAAISEVC-PLVAVPNYFVQKCYLRPMRYHVG 222
+P + S QL + H+E+Y+ + L + + AI ++ P A V++ L VG
Sbjct: 44 QPAKASPSQLALCHSEQYINNFLTGNLSDKAIKKIGFPYSA---QLVERTLLS-----VG 95
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
G+++A AL+ G + N+ GG+HHA G GFC + D+++ L + T +I D
Sbjct: 96 GSIQAAEEALKSGLACNLSGGYHHAYSDYGSGFCIFNDLAIAATHLLNTHKAKTVLIFDC 155
Query: 283 DAHQGNGYEKDFMNETRIFIMETCITS-----KAKEAIRCRIELAPYTEDQHYLEKIEAG 337
D HQG+G + ++ I+ I + K+ L + D Y++ ++
Sbjct: 156 DVHQGDGTAQIINQQSHKNIITCSIHCEQNFPRLKQQSDYDFSLPAKSGDDEYIDTLQHS 215
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L + PDII+YNAG D+ D LGLL +S G+ RD V ++ +P++
Sbjct: 216 LALCVSIHQPDIILYNAGADIYTKDELGLLNVSITGVYERDLFVLDFCKQHNIPLMCGLG 275
Query: 398 GGYLKQTARIIADSILNL 415
GGY + DS++N+
Sbjct: 276 GGYQRNL-----DSLINV 288
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+++A AL+ G + N+ GG+HHA G GFC + D+++ L + T +I D
Sbjct: 96 GSIQAAEEALKSGLACNLSGGYHHAYSDYGSGFCIFNDLAIAATHLLNTHKAKTVLIFDC 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|188579954|ref|YP_001923399.1| histone deacetylase superfamily protein [Methylobacterium populi
BJ001]
gi|179343452|gb|ACB78864.1| histone deacetylase superfamily [Methylobacterium populi BJ001]
Length = 294
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 130/290 (44%), Gaps = 21/290 (7%)
Query: 114 VYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQ 173
++ P Y +L H F +K+ + L A+ + D + P+
Sbjct: 1 MFHPAYEA---ELPDGHRFPMRKYGRLAETL---------RARGLVPDGFVMPEPADAAL 48
Query: 174 LLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALR 233
L AH Y+ ++ + AI + +P V + R GGTL A LAL
Sbjct: 49 LSGAHDPAYVAAVLAAQVPRAIERA---IGLP---VTESVAARSRASAGGTLRAARLALG 102
Query: 234 RGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKD 293
G + + GG HHA G GFC + D+++ L + +I A+I+DLD HQG+G
Sbjct: 103 HGLAGSTAGGSHHARRAGGAGFCVFNDVAVAALALRREGAIGRALIIDLDVHQGDGTADC 162
Query: 294 FMNETRIFIMET-CITSKAKEAIRCRIE--LAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
E +F + C + + + ++ L D Y +EA L +++F PD+I
Sbjct: 163 LAREPELFTLSIHCERNYPHDKVPGDLDIGLPDGLGDAEYRAVLEAHLPGLVQNFAPDLI 222
Query: 351 VYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
YNAG D +D LG L ++ G+ RD V AR ++VP+ + GGY
Sbjct: 223 FYNAGVDPHRDDRLGRLDLTDDGLRARDRYVVGLARSQKVPLCAVIGGGY 272
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL A LAL G + + GG HHA G GFC + D+++ L + +I A+I+DL
Sbjct: 92 GTLRAARLALGHGLAGSTAGGSHHARRAGGAGFCVFNDVAVAALALRREGAIGRALIIDL 151
Query: 64 DAHQ 67
D HQ
Sbjct: 152 DVHQ 155
>gi|46200256|ref|YP_005923.1| deacetylase [Thermus thermophilus HB27]
gi|46197884|gb|AAS82296.1| deacetylase [Thermus thermophilus HB27]
Length = 294
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 122/242 (50%), Gaps = 11/242 (4%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
++ EV E L +AH YL+ L F E + +P + LR + G
Sbjct: 37 VLPAPEVPREALFLAHEASYLEKL---FGEGLTREESLRLGLP---FSQALLRRALHAAG 90
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST-AMIVD 281
GTL A AL+ G +N+ GG HHA + G+ + D+++ + L + S ++VD
Sbjct: 91 GTLAAALDALKTGLGLNLSGGTHHAFPGRAEGYSLFNDVAVAIFWLRAKEGFSGRVLVVD 150
Query: 282 LDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGL 338
LDAHQGNG F + +F + KE + L T D+ YL +E L
Sbjct: 151 LDAHQGNGTAFFFREDPSVFTLSLHGERNYPLKKERSDLDVGLPDGTGDEAYLWALEEAL 210
Query: 339 ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSG 398
E++ R+F PD++ YNAG DVL D G LA+SP+G+ RRDE VF + P+V++ G
Sbjct: 211 EKA-RAFRPDLVFYNAGVDVLKGDRFGRLALSPEGVRRRDERVFRFVKALGAPLVVVMGG 269
Query: 399 GY 400
GY
Sbjct: 270 GY 271
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST-AMIVDLDAHQFSD 70
AL+ G +N+ GG HHA + G+ + D+++ + L + S ++VDLDAHQ +
Sbjct: 99 ALKTGLGLNLSGGTHHAFPGRAEGYSLFNDVAVAIFWLRAKEGFSGRVLVVDLDAHQGNG 158
Query: 71 YYF-----PSAH--SIKRKRKVEFLKERKALE 95
F PS S+ +R KER L+
Sbjct: 159 TAFFFREDPSVFTLSLHGERNYPLKKERSDLD 190
>gi|56750171|ref|YP_170872.1| histone deacetylase/AcuC/AphA family protein [Synechococcus
elongatus PCC 6301]
gi|56685130|dbj|BAD78352.1| similar to histone deacetylase/AcuC/AphA family protein
[Synechococcus elongatus PCC 6301]
Length = 304
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 139/298 (46%), Gaps = 28/298 (9%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ L H F K++ + + L + + + +P
Sbjct: 4 PLVYHPGYSA---PLPSTHRFPMAKFRLLHDRLLRE--------RVVYPQQFHQPDRPPL 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISE-VCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAG 228
E L H+ Y+++ ++ + E + +P V++ ++ VGGT+
Sbjct: 53 EWLTSVHSLDYIQA----YSQGTLDERSLRRIGLPWSPALVERTWIA-----VGGTILTA 103
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
LAL++G + N+ GG HHA G GFC + D ++ +LL Q + + +IVDLD HQG+
Sbjct: 104 RLALQQGLACNLAGGTHHAFPDYGSGFCIFNDCAIAARLLLQERLVERILIVDLDVHQGD 163
Query: 289 GYEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRS 344
G F ++ R+F E ++ + + C + L ED YL+++ L L
Sbjct: 164 GTAWIFQDDPRVFTFSMHCEANFPARNQHS-DCDVPLPEGMEDDAYLQQLAQYLPDLLSQ 222
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402
P++++YNAG D D LG LA++ G+ RR+ V + P+ + GGY +
Sbjct: 223 VRPNLVIYNAGVDPHGGDRLGKLALTDTGLFRREMQVLETCVRQGYPVAAVLGGGYCE 280
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL++G + N+ GG HHA G GFC + D ++ +LL Q + + +IVDL
Sbjct: 98 GTILTARLALQQGLACNLAGGTHHAFPDYGSGFCIFNDCAIAARLLLQERLVERILIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|56460961|ref|YP_156242.1| histone deacetylase/AcuC/AphA family protein [Idiomarina loihiensis
L2TR]
gi|56179971|gb|AAV82693.1| Histone deacetylase/AcuC/AphA family protein [Idiomarina loihiensis
L2TR]
Length = 311
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 142/303 (46%), Gaps = 26/303 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P +Y P Y+ L H + +K++ + ++ KH T + +P+ +S
Sbjct: 7 PFIYSPLYSE--LDLPPRHRYPIEKYRLLKDWAVKH---------GATNNQWHQPEPLSW 55
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
EQ+ H YL L+ + + + P + ++ R + GGTL LA
Sbjct: 56 EQVARTHCPGYLSQLRQN---SMDKSSWRRIGFP--WSEQLLYRTLT-SAGGTLLTTELA 109
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L +G +I+ GG+HHA + G GFC D+++ + +++D D HQG+G
Sbjct: 110 LTKGVAIHFSGGYHHAHKDWGSGFCLLNDLAIACNEILVRHPKLKIVVLDTDVHQGDGTA 169
Query: 292 KDFMNETRIFIMETCITSK------AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
F N+ R+F TC +K + I LA +T D+ YL +E LER R
Sbjct: 170 TLFENDNRVF---TCSIHGERNFPFSKASSNLDIPLAKHTSDKEYLAALENTLERINREI 226
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PD+I+Y+AG D+ D LG L IS GI +RD V A+ + P+ + GGY +
Sbjct: 227 KPDLILYDAGVDIYQRDELGHLNISLAGIFQRDLTVLRFAKRHKTPLAAVIGGGYQRNLP 286
Query: 406 RII 408
R++
Sbjct: 287 RLV 289
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 15 RGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+G +I+ GG+HHA + G GFC D+++ + +++D D HQ
Sbjct: 112 KGVAIHFSGGYHHAHKDWGSGFCLLNDLAIACNEILVRHPKLKIVVLDTDVHQ 164
>gi|326520441|dbj|BAK07479.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 143
Score = 118 bits (295), Expect = 7e-24, Method: Composition-based stats.
Identities = 51/83 (61%), Positives = 64/83 (77%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
VGG++ + LAL RGW+IN+GGGFHH S +GGGFCAYADISL ++ F +IS MI+
Sbjct: 1 VGGSILSAKLALERGWAINVGGGFHHCSAEEGGGFCAYADISLCIQFAFVRLNISRVMII 60
Query: 281 DLDAHQGNGYEKDFMNETRIFIM 303
DLDAHQGNGYEKDF N+ +I+
Sbjct: 61 DLDAHQGNGYEKDFANDGMSYIL 83
Score = 92.8 bits (229), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/68 (58%), Positives = 51/68 (75%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ + LAL RGW+IN+GGGFHH S +GGGFCAYADISL ++ F +IS MI+DL
Sbjct: 3 GSILSAKLALERGWAINVGGGFHHCSAEEGGGFCAYADISLCIQFAFVRLNISRVMIIDL 62
Query: 64 DAHQFSDY 71
DAHQ + Y
Sbjct: 63 DAHQGNGY 70
>gi|375111108|ref|ZP_09757319.1| histone deacetylase superfamily protein [Alishewanella jeotgali
KCTC 22429]
gi|374568650|gb|EHR39822.1| histone deacetylase superfamily protein [Alishewanella jeotgali
KCTC 22429]
Length = 312
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 138/296 (46%), Gaps = 25/296 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ L H + K++ ++ L A + Q PQ +
Sbjct: 7 PLVYHPCYSE--LTLPANHRYPIGKYRTLYQRLL---------ALGVPQSAFYLPQAIKA 55
Query: 172 EQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+ L + H Y+ +L + + A+ + P + + R + +GGTL L
Sbjct: 56 QALELLHEPAYVNALCHGTLDARAMRRI----GFP--WSPQLIARSLT-SLGGTLLCAEL 108
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G ++++ GG+HHA +G GFC + D++ L Q + I I D D HQG+G
Sbjct: 109 ALEHGLALHLSGGYHHAFYAEGSGFCLFNDLAF-AALSLQQRGIGPIQIFDCDVHQGDGS 167
Query: 291 EKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFC 346
F + + I I + K A + R I L DQ YLE + L+ LR +
Sbjct: 168 AALFADNSGI-ITASLHCEKNFPARKQRSDWDIGLERDCTDQTYLEAVSQSLDTLLRWYQ 226
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402
P++++Y+AG D+ D LGLL IS G++ RD LV + + +P+ + GGY +
Sbjct: 227 PELVLYDAGVDIHRQDDLGLLNISTAGVLARDTLVLQRCHDAGIPVAAVIGGGYQR 282
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL LAL G ++++ GG+HHA +G GFC + D++ L Q + I I D
Sbjct: 101 GTLLCAELALEHGLALHLSGGYHHAFYAEGSGFCLFNDLA-FAALSLQQRGIGPIQIFDC 159
Query: 64 DAHQ 67
D HQ
Sbjct: 160 DVHQ 163
>gi|429751872|ref|ZP_19284765.1| histone deacetylase family protein [Capnocytophaga sp. oral taxon
326 str. F0382]
gi|429178776|gb|EKY20044.1| histone deacetylase family protein [Capnocytophaga sp. oral taxon
326 str. F0382]
Length = 307
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 119/254 (46%), Gaps = 16/254 (6%)
Query: 162 NIIEPQEVSEEQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYL--RPMR 218
N P++ ++ + HT+ YL + L + + A+P FVQ L R +
Sbjct: 48 NFHTPEKATQATAALVHTQPYLHNFLHLTLSHKE--------ALPIGFVQCQQLVDRELT 99
Query: 219 YHVGGTLEAGFLALRRG-WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
V GT+E ALR G + NI GG HHA +G GFC D ++ L ++
Sbjct: 100 L-VQGTVEGALWALRTGEIAFNIAGGTHHAFSNRGEGFCMLNDQAIAAAYLLHHTAVKKV 158
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
+IVDLD HQGNG + F N +F + KE I L T+D+ YL+ +
Sbjct: 159 LIVDLDVHQGNGTAEIFRNTPEVFTFSMHAQANYPFEKEQSDKDIALPNGTDDKTYLDIL 218
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
+ L + + + PD + Y AG DVL D LG L+++ +G RD LVF +P+
Sbjct: 219 RSVLPQLIEAHQPDFVFYQAGVDVLATDKLGKLSLTVEGCGERDRLVFETCYRYHLPVQC 278
Query: 395 LTSGGYLKQTARII 408
GGY Q I+
Sbjct: 279 SMGGGYSPQLTSIL 292
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRG-WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 62
GT+E ALR G + NI GG HHA +G GFC D ++ L ++ +IVD
Sbjct: 103 GTVEGALWALRTGEIAFNIAGGTHHAFSNRGEGFCMLNDQAIAAAYLLHHTAVKKVLIVD 162
Query: 63 LDAHQ 67
LD HQ
Sbjct: 163 LDVHQ 167
>gi|94969816|ref|YP_591864.1| histone deacetylase superfamily protein [Candidatus Koribacter
versatilis Ellin345]
gi|94551866|gb|ABF41790.1| histone deacetylase superfamily [Candidatus Koribacter versatilis
Ellin345]
Length = 298
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 112/207 (54%), Gaps = 13/207 (6%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST-AMI 279
VGGTL AG AL G+ + GG HHA ++G G+C + DI++ + L +SK ++ A +
Sbjct: 93 VGGTLSAGMDALSSGFGGTLAGGTHHAFRSEGSGYCVFNDIAIAI-LYLRSKGLAQRAAV 151
Query: 280 VDLDAHQGNGYEKDFMNETRIFIMETCITSKA-----KEAIRCRIELAPYTEDQHYLEKI 334
+DLD HQG+G + F N+ ++ + S+A K+ + IEL T D YL +
Sbjct: 152 IDLDVHQGDGTAQIFQNDA--LVLTISVHSRANFPFRKQVSKIDIELEDATHDDEYLNVV 209
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
+ L R + F P+I+ Y +G D L D LG LA++ G+ RD V AR VP+V+
Sbjct: 210 DGLLPR-VADFKPEILFYQSGVDGLATDSLGRLALTHAGLKERDRRVCTFARSFGVPLVI 268
Query: 395 LTSGGY---LKQTARIIADSILNLADL 418
GGY ++ T A++ AD+
Sbjct: 269 TLGGGYSLPIEHTVTAHANTFRTAADV 295
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST-AMIVD 62
GTL AG AL G+ + GG HHA ++G G+C + DI++ + L +SK ++ A ++D
Sbjct: 95 GTLSAGMDALSSGFGGTLAGGTHHAFRSEGSGYCVFNDIAIAI-LYLRSKGLAQRAAVID 153
Query: 63 LDAHQ 67
LD HQ
Sbjct: 154 LDVHQ 158
>gi|88799789|ref|ZP_01115363.1| Deacetylase, including yeast histone deacetylase and acetoin
utilization protein [Reinekea blandensis MED297]
gi|88777523|gb|EAR08724.1| Deacetylase, including yeast histone deacetylase and acetoin
utilization protein [Reinekea sp. MED297]
Length = 306
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 148/325 (45%), Gaps = 28/325 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y+ F + H F +K+ +++ L + + P+ +E
Sbjct: 4 PLIYHPGYSPEF---DANHRFPMEKFARLYDRLEN--------IGLLRHCELFRPEPANE 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ +AH Y+ + + ++ + +P + +R VGG+L + LA
Sbjct: 53 ATIRLAHHPDYVTGYR---DNQLSAKAMRRIGLP---WSEGVMRRTFLAVGGSLLSTELA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L RG + ++ GG HHA +G GFC + D+++ + I +I+D D HQG+G
Sbjct: 107 LERGLAAHLAGGTHHAHYQEGSGFCIFNDLAICARHALTKPGIDRVLIIDTDVHQGDGTA 166
Query: 292 KDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
+ N+ I + C + K EL + DQ YL + + L PD
Sbjct: 167 RILDNDPDILTVSFHCRQNFPARKAHSNWDFELDHQSGDQTYLNLVHRHIPYLLDITEPD 226
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
+++Y+AG DV +D LGLL ++ GI +RD + + R +P+ + GGY+K R+
Sbjct: 227 LVLYDAGADVHQDDALGLLNLTDDGIYQRDVFILSECAYRNIPVSCVIGGGYMKDRKRLA 286
Query: 409 -ADSILNLADLGLISRPYNIWFIYY 432
SI++ A +++W YY
Sbjct: 287 EVHSIIHQA-------AFDVWREYY 304
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L + LAL RG + ++ GG HHA +G GFC + D+++ + I +I+D
Sbjct: 98 GSLLSTELALERGLAAHLAGGTHHAHYQEGSGFCIFNDLAICARHALTKPGIDRVLIIDT 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|358447846|ref|ZP_09158359.1| deacetylase family protein [Marinobacter manganoxydans MnI7-9]
gi|357227971|gb|EHJ06423.1| deacetylase family protein [Marinobacter manganoxydans MnI7-9]
Length = 224
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 96/196 (48%), Gaps = 8/196 (4%)
Query: 208 FVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKL 267
V++ +L P GT+ LAL+ G + ++ GG HHA GFC D+++ +
Sbjct: 9 LVRRTFLAP-----SGTVLTAQLALQHGIACHLAGGTHHAHYDYAAGFCILNDLAIAANV 63
Query: 268 LFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPY 324
L Q + I +I D+D HQG+G NE F K+ + L
Sbjct: 64 LLQQEGIERVLIFDVDVHQGDGTAALLANEPNAFTCSIHCERNYPFEKKIGDLDVALPDG 123
Query: 325 TEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMK 384
ED YLE + L +SL PDI++Y+AG DV NDPLG L IS QGI RD V +
Sbjct: 124 LEDGAYLEVVSETLHKSLALSRPDIVLYDAGVDVFRNDPLGRLNISEQGIFERDFQVLSE 183
Query: 385 ARERRVPIVMLTSGGY 400
+ R +P+ + GGY
Sbjct: 184 LKRRDIPVATVIGGGY 199
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL+ G + ++ GG HHA GFC D+++ +L Q + I +I D+
Sbjct: 19 GTVLTAQLALQHGIACHLAGGTHHAHYDYAAGFCILNDLAIAANVLLQQEGIERVLIFDV 78
Query: 64 DAHQ 67
D HQ
Sbjct: 79 DVHQ 82
>gi|218438511|ref|YP_002376840.1| histone deacetylase superfamily protein [Cyanothece sp. PCC 7424]
gi|218171239|gb|ACK69972.1| histone deacetylase superfamily [Cyanothece sp. PCC 7424]
Length = 304
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 132/300 (44%), Gaps = 20/300 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY +Y L H F K+K +++ L + T ++ P+ ++
Sbjct: 4 PIVYHRDY---VTPLPDGHRFPMPKFKLLYDLL--------ITDGITTPESTHTPEVPTQ 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E + + HT Y+ + L P + C +GGT+ LA
Sbjct: 53 EIIQLVHTPDYVGAYCSGTLDPKAQRRIGLPWSPGLVTRTCTA------LGGTILTAKLA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L++G + N GG HHA + G GFC + D+++ + L + +IVDLD HQG+G
Sbjct: 107 LKQGIACNTAGGTHHAFPSYGSGFCIFNDLAIATRTLQHLGLVKKVLIVDLDVHQGDGTA 166
Query: 292 KDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
F N+ +F + K+ + L ED+ YL+ + L L F PD
Sbjct: 167 YIFQNDESVFTFSMHCEANFPGTKQKSDLDVPLPVGLEDEGYLKILSQYLSDLLCQFNPD 226
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
+++Y+AG D ++D LG LA++ GI RRD V P+ + GGY K ++
Sbjct: 227 LVLYDAGVDTHISDRLGKLAMTNIGIYRRDFYVLSTCLAAGYPVAGVIGGGYAKDLQNLV 286
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL++G + N GG HHA + G GFC + D+++ + L + +IVDL
Sbjct: 98 GTILTAKLALKQGIACNTAGGTHHAFPSYGSGFCIFNDLAIATRTLQHLGLVKKVLIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|428781211|ref|YP_007172997.1| deacetylase [Dactylococcopsis salina PCC 8305]
gi|428695490|gb|AFZ51640.1| deacetylase, histone deacetylase/acetoin utilization protein
[Dactylococcopsis salina PCC 8305]
Length = 307
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 131/300 (43%), Gaps = 36/300 (12%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PI+Y P+Y L H F K+ ++ L D IIEPQ+V +
Sbjct: 4 PIIYHPDY---VTPLPPGHRFPMAKFGLLYEILLA--------------DGIIEPQQVHQ 46
Query: 172 ------EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGG 223
E L + HT +Y++ N S+ + +P + L VGG
Sbjct: 47 PEIAPREWLELVHTSEYVEDY---CNGTLDSKAQRRIGLPWSEQLAHRTCLA-----VGG 98
Query: 224 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 283
T+ LAL +G + N GG HHA G GFC + D+++ ++ + +IVDLD
Sbjct: 99 TILTAKLALEQGLACNTAGGTHHAFPDYGAGFCIFNDLAIAPSVMLNLGLVEKILIVDLD 158
Query: 284 AHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLER 340
HQG+G F ++ R+F K+ I L +D YL+ + L +
Sbjct: 159 VHQGDGTAFIFQDDPRVFTFSMHCGDNFPGRKQKSDLDIPLPQGLDDDGYLQILAKQLPQ 218
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
L + PD++ Y+AG D ++D LG LA+S +GI RRD V P + GGY
Sbjct: 219 VLDAVKPDLVFYDAGVDPHVDDRLGKLALSDRGIYRRDRAVLSTCLAENYPTACVIGGGY 278
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL +G + N GG HHA G GFC + D+++ ++ + +IVDL
Sbjct: 98 GTILTAKLALEQGLACNTAGGTHHAFPDYGAGFCIFNDLAIAPSVMLNLGLVEKILIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|94501715|ref|ZP_01308229.1| putative histone deacetylase family protein [Oceanobacter sp.
RED65]
gi|94426115|gb|EAT11109.1| putative histone deacetylase family protein [Oceanobacter sp.
RED65]
Length = 305
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 162 NIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCP----LVAVP--NYFVQKCYLR 215
N+++PQ S E L I H YL L +++ P + +P V +
Sbjct: 44 NVLQPQAASLEDLSIVHDATYLNGL-------VGNDIDPKAWRRIGLPWSQGLVDRTLTA 96
Query: 216 PMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS 275
P GTL A AL+ G + ++ GG HHA G GFC D++ K L + +
Sbjct: 97 P-----NGTLLAARTALQEGLACHLAGGTHHAHRDFGSGFCMINDLAYAAKTLVANNEVQ 151
Query: 276 TAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLE 332
+I D D HQG+G N+ IF K + L Y +D+ Y++
Sbjct: 152 RILIFDCDVHQGDGTAAILENDADIFTCSIHCEKNFPFRKSQSDLDVGLDLYLQDKEYID 211
Query: 333 KIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPI 392
+ + L+ L + PD+++Y+AG DV +D LG L I+ QGI RDE V + +PI
Sbjct: 212 VVMSTLQDLLETVKPDLVLYDAGVDVWQHDDLGKLDITWQGIHDRDEHVIKTCLLKHIPI 271
Query: 393 VMLTSGGYLKQTARI 407
+ + GGY K R+
Sbjct: 272 MTVIGGGYDKDHQRL 286
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL A AL+ G + ++ GG HHA G GFC D++ K L + + +I D
Sbjct: 99 GTLLAARTALQEGLACHLAGGTHHAHRDFGSGFCMINDLAYAAKTLVANNEVQRILIFDC 158
Query: 64 DAHQ 67
D HQ
Sbjct: 159 DVHQ 162
>gi|37521188|ref|NP_924565.1| histone deacetylase family protein [Gloeobacter violaceus PCC 7421]
gi|35212184|dbj|BAC89560.1| histone deacetylase family protein [Gloeobacter violaceus PCC 7421]
Length = 303
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 127/305 (41%), Gaps = 20/305 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P VY P Y + L H F K+ + +YL + + EP+
Sbjct: 4 PFVYSPRYEAN---LPPAHRFPMGKFSRLHHYL--------LNQGVARPEQFWEPERAGW 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E L + H +Y+ A L P + C VGGT+ LA
Sbjct: 53 EWLTLVHAPRYVADFCAGILSAQEFRRIGLPWSPALVERTCTA------VGGTILTARLA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
LR G + N GG HHA G GFC + D+++ ++L + +IVDLD HQG+G
Sbjct: 107 LRHGLACNTCGGTHHAFPDFGSGFCIFNDLAVSARVLLAEGQVRRVLIVDLDVHQGDGTA 166
Query: 292 KDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
F +E +F K+ + L +D YL + L + + PD
Sbjct: 167 WIFADEPGVFTFSMHCEQNFPGRKQRSDLDVPLPIGLDDDTYLRVLNEHLPGLIETVRPD 226
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
+++Y+AG D +D LG LA++ +G+ RD V +R +P+ + GGY ++
Sbjct: 227 LVLYDAGVDPHRSDKLGKLALTDRGLFERDRAVLGLCLKRGIPVAAVIGGGYDNNLDALV 286
Query: 409 ADSIL 413
A L
Sbjct: 287 ARHAL 291
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LALR G + N GG HHA G GFC + D+++ ++L + +IVDL
Sbjct: 98 GTILTARLALRHGLACNTCGGTHHAFPDFGSGFCIFNDLAVSARVLLAEGQVRRVLIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|343494601|ref|ZP_08732851.1| histone deacetylase superfamily protein [Vibrio nigripulchritudo
ATCC 27043]
gi|342825014|gb|EGU59525.1| histone deacetylase superfamily protein [Vibrio nigripulchritudo
ATCC 27043]
Length = 308
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 143/292 (48%), Gaps = 14/292 (4%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y+ L H + K++ ++ + + + + +A++ + +EP +S
Sbjct: 3 PVIYHPIYSE--LSLPPKHRYPITKYRRLYENVVQTLEH---DAQWREGLSFVEPTALST 57
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
EQ+L H E+Y++ L F+ + + P + ++ R + GGT+E A
Sbjct: 58 EQVLEVHDEEYIQLL---FSGEMPAAKMRRIGFP--WSEQLITRTLTS-AGGTVETAKQA 111
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
+ G ++++ GG+HHA + G GFC D+ L ++++I +IVD D H G+G
Sbjct: 112 IEHGIALHLSGGYHHAHKDFGSGFCLINDLVLAAHEALKNENIDKVLIVDADVHHGDGTA 171
Query: 292 KDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
I + C + K + LA D+ +L + +E ++ PD
Sbjct: 172 TLCEGREDIITLSFHCDKNFPARKPTSDMDVPLAREIGDEEFLSSFKQVVEMAINIHQPD 231
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
+I+Y+AG D+ +D LG L +S +GI +RD +F+ A+ +PI + GGY
Sbjct: 232 LIIYDAGVDIHTDDELGYLQVSAEGIYQRDHFIFLTAKNAGIPIASVVGGGY 283
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+E A+ G ++++ GG+HHA + G GFC D+ L ++++I +IVD
Sbjct: 103 GTVETAKQAIEHGIALHLSGGYHHAHKDFGSGFCLINDLVLAAHEALKNENIDKVLIVDA 162
Query: 64 DAHQ 67
D H
Sbjct: 163 DVHH 166
>gi|117921075|ref|YP_870267.1| histone deacetylase superfamily protein [Shewanella sp. ANA-3]
gi|117613407|gb|ABK48861.1| histone deacetylase superfamily [Shewanella sp. ANA-3]
Length = 300
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 138/295 (46%), Gaps = 25/295 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+V+ Y+ L H F + K+ ++ YL + V A+F T P ++
Sbjct: 3 PLVHHASYSK--LALPSHHRFPTTKYARLYQYLLDN--QLAVPAQFHT------PSPMTA 52
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
E ++ H + Y++ ++ AA+ + + + + + V GT L
Sbjct: 53 EDVMQVHQQDYVEQFIQGRLACAALRRI-------GFPWSEALVERTLHSVSGTSLTASL 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL+ G ++++ GG+HHA G G+C + D+ + + L + + +I D D HQG+G
Sbjct: 106 ALQAGIALHLTGGYHHAHYDFGSGYCIFNDLIIAARKLMAEQQLHKVLIFDCDVHQGDGT 165
Query: 291 EKDFMNETRIFIMETCITSKA-----KEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
++ I+ I K K+ IEL ++D Y E +E LE +R
Sbjct: 166 AT--LSHRHQGIISCSIHGKENFPSRKQQSHYDIELTKGSDDSAYQETVEQTLELLIRLH 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
PD+I+Y+AG D+ +D LG L IS QG+ +RD V A+ +P+ + GGY
Sbjct: 224 QPDLILYDAGVDIHQDDDLGHLMISKQGLYQRDLTVLSMAKAANIPVAAVIGGGY 278
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LAL+ G ++++ GG+HHA G G+C + D+ + + L + + +I D
Sbjct: 98 GTSLTASLALQAGIALHLTGGYHHAHYDFGSGYCIFNDLIIAARKLMAEQQLHKVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|114048034|ref|YP_738584.1| histone deacetylase superfamily protein [Shewanella sp. MR-7]
gi|113889476|gb|ABI43527.1| histone deacetylase superfamily [Shewanella sp. MR-7]
Length = 300
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 137/295 (46%), Gaps = 25/295 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY Y+ L H F + K+ ++ YL + V A+F T P ++
Sbjct: 3 PLVYHASYSK--LALPSHHRFPTTKYARLYQYLLDN--QLAVPAQFHT------PSPMTA 52
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
E ++ H + Y++ ++ S + A+ + + + + + V GT L
Sbjct: 53 EDVMQVHQQDYVEQFIQGSLSSTALRRI-------GFPWSEALVERTLHSVSGTSLTAHL 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
A++ G ++++ GG+HHA G G+C + D+ + + L + + +I D D HQG+G
Sbjct: 106 AMQTGIALHLTGGYHHAHYDFGSGYCIFNDLIIAARKLMAEQQLHKVLIFDCDVHQGDGT 165
Query: 291 EKDFMNETRIFIMETCITSKA-----KEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
++ I+ I K K+ IEL +D Y E +E LE +R
Sbjct: 166 AT--LSHKHQGIISCSIHCKENFPSRKQQSHYDIELTKGADDSAYQETVEQTLELLIRLH 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
PD+I+Y+AG D+ +D LG L IS QG+ +RD V + +P+ + GGY
Sbjct: 224 QPDLILYDAGVDIHQDDDLGHLKISKQGLYQRDLTVLSMVKAANIPVAAVIGGGY 278
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LA++ G ++++ GG+HHA G G+C + D+ + + L + + +I D
Sbjct: 98 GTSLTAHLAMQTGIALHLTGGYHHAHYDFGSGYCIFNDLIIAARKLMAEQQLHKVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|88859197|ref|ZP_01133837.1| putative histone deacetylase family protein [Pseudoalteromonas
tunicata D2]
gi|88818214|gb|EAR28029.1| putative histone deacetylase family protein [Pseudoalteromonas
tunicata D2]
Length = 302
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 132/301 (43%), Gaps = 25/301 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ F+ + H F K F L++H LV+ ++ NI +P S
Sbjct: 8 PLVYHPNYS---FEFDPNHRFVMSK----FADLYQH----LVQTGYVNH-NIFKPLRASI 55
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGF 229
+L H +YL L + + + +P + + ++ GTL
Sbjct: 56 SELEKVHCSRYLHQLNQN---TLDQKASRRIGLPWSEQLMARTFIEAQ-----GTLLTAQ 107
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL+ G + ++ GG HHA G GFC D++ L S ++ +I DLD HQG+G
Sbjct: 108 LALKNGIACHLAGGTHHAHYDFGSGFCMVNDLAYTAASLIDSGDVTNVLIFDLDVHQGDG 167
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
+ IF K I LA +D YL IE+ L +
Sbjct: 168 TAAILQHHPYIFTCSIHCEKNFPFRKSQSDLDIGLAIGMQDDAYLALIESTLRSLIADLN 227
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
P +++Y+AG D+ +D LG L IS QGI +RD V + VP+ + GGY K R
Sbjct: 228 PSLVLYDAGVDIWQHDSLGKLDISWQGIEKRDHTVLSVCQRIGVPVATVIGGGYDKDPQR 287
Query: 407 I 407
+
Sbjct: 288 L 288
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL LAL+ G + ++ GG HHA G GFC D++ L S ++ +I DL
Sbjct: 101 GTLLTAQLALKNGIACHLAGGTHHAHYDFGSGFCMVNDLAYTAASLIDSGDVTNVLIFDL 160
Query: 64 DAHQ 67
D HQ
Sbjct: 161 DVHQ 164
>gi|428309234|ref|YP_007120211.1| deacetylase [Microcoleus sp. PCC 7113]
gi|428250846|gb|AFZ16805.1| deacetylase, histone deacetylase/acetoin utilization protein
[Microcoleus sp. PCC 7113]
Length = 305
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 133/293 (45%), Gaps = 22/293 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PI+Y P+Y L + H F K F L++ + N + T D P+
Sbjct: 4 PIIYHPDYVA---PLPEGHRFPMPK----FGKLYERLLN----SHIATLDQFHTPEIPPT 52
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
E + + HT Y+++ LK + + A + +P ++ VGGTL L
Sbjct: 53 EWIELVHTSDYVQAYLKGTLDTKAQRRI----GLP---WSSALVKRTCTAVGGTLLTAQL 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL+ G + N GG HHA + G GFC + D+++ ++L Q +I+DLD HQG+G
Sbjct: 106 ALKYGLACNTAGGTHHAFPSYGSGFCIFNDLAIAARVLQQQGLAQKILILDLDVHQGDGT 165
Query: 291 EKDFMNETRIFI--METCIT-SKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
F ++ +F M I K+ + L ED YL+ + L L F P
Sbjct: 166 AFIFQDDPTVFTFSMHCEINFPSTKQTSDLDVPLPEGMEDDAYLQTLARYLPDLLSEFQP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
DI++Y+AG D D LG LA++ G+ RR+ V P+ + GGY
Sbjct: 226 DIVLYDAGVDPHTGDRLGKLALTDTGLYRREMQVLSTCVAAGYPVASVIGGGY 278
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL LAL+ G + N GG HHA + G GFC + D+++ ++L Q +I+DL
Sbjct: 98 GTLLTAQLALKYGLACNTAGGTHHAFPSYGSGFCIFNDLAIAARVLQQQGLAQKILILDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|442609735|ref|ZP_21024469.1| Deacetylases, including yeast histone deacetylase and acetoin
utilization protein [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
gi|441748751|emb|CCQ10531.1| Deacetylases, including yeast histone deacetylase and acetoin
utilization protein [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
Length = 307
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 137/304 (45%), Gaps = 31/304 (10%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY Y+ F + H F K+ +++ V+ + +N+ +P+ +
Sbjct: 13 PLVYHSNYS---FSFDPNHRFVMSKFANLYAE---------VKKMGLVGNNLYQPELGAP 60
Query: 172 EQLLIAHTEKYLKSLKWS--FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
+L H E YL L W + A+ + +VP + + + P+ GTL+
Sbjct: 61 SRLETVHCENYLWDL-WHDRLDDKAMRRIGLPWSVP--LMARTFTAPL-----GTLKTAE 112
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL G + ++ GG HHA G GFC D++ L + + +I DLD HQG+G
Sbjct: 113 LALNHGIACHLAGGTHHAHYDFGSGFCMVNDLAFTAHELINAGKVHNVLIFDLDVHQGDG 172
Query: 290 YEKDFMNETRIFIMETCITSKAKE------AIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+ IF TC K + I L + +D YL + LE L+
Sbjct: 173 TAAMCQHNPYIF---TCSIHCEKNFPFRKVSSDLDIGLPNHIQDAEYLAIVHETLEGLLQ 229
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PDI++Y+AG DV +D LG L I+ QGI +RD LV ++ VP+ + GGY
Sbjct: 230 DVNPDIVLYDAGVDVWEHDGLGKLDITWQGIEKRDALVLKTCQQYGVPVATVIGGGYDSD 289
Query: 404 TARI 407
R+
Sbjct: 290 HLRL 293
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL+ LAL G + ++ GG HHA G GFC D++ L + + +I DL
Sbjct: 106 GTLKTAELALNHGIACHLAGGTHHAHYDFGSGFCMVNDLAFTAHELINAGKVHNVLIFDL 165
Query: 64 DAHQ 67
D HQ
Sbjct: 166 DVHQ 169
>gi|397169769|ref|ZP_10493199.1| histone deacetylase superfamily protein [Alishewanella aestuarii
B11]
gi|396088664|gb|EJI86244.1| histone deacetylase superfamily protein [Alishewanella aestuarii
B11]
Length = 312
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 140/296 (47%), Gaps = 25/296 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y+ L H + K++ ++ L A + PQ +
Sbjct: 7 PLIYHPCYSE--LTLPANHRYPIGKYRTLYQRLL---------ALGVPDSAFYLPQAIKA 55
Query: 172 EQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+ L + H Y+ +L + + + A+ + P + + R + +GGTL L
Sbjct: 56 QALELLHEPAYVNALCQGTLDARAMRRI----GFP--WSPELITRSLT-SLGGTLLCAEL 108
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL +G ++++ GG+HHA +G GFC + D++ L Q + I +I D D HQG+G
Sbjct: 109 ALEQGLALHLSGGYHHAFYAEGSGFCLFNDLAF-AALSIQQRGIGPILIFDCDVHQGDGS 167
Query: 291 EKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFC 346
F + + I I + K A + R I L DQ YLE + L+ LR +
Sbjct: 168 AALFADNSGI-ITASLHCEKNFPARKQRSDWDIGLERDCTDQTYLEAVSQSLDTLLRWYQ 226
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402
P++++Y+AG D+ D LGLL IS G++ RD LV + + +P+ + GGY +
Sbjct: 227 PELVLYDAGVDIHRQDDLGLLNISTAGVLARDTLVLQRCHDAGIPVAAVIGGGYQR 282
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL LAL +G ++++ GG+HHA +G GFC + D++ L Q + I +I D
Sbjct: 101 GTLLCAELALEQGLALHLSGGYHHAFYAEGSGFCLFNDLA-FAALSIQQRGIGPILIFDC 159
Query: 64 DAHQ 67
D HQ
Sbjct: 160 DVHQ 163
>gi|383937130|ref|ZP_09990540.1| histone deacetylase 11 [Rheinheimera nanhaiensis E407-8]
gi|383701793|dbj|GAB60631.1| histone deacetylase 11 [Rheinheimera nanhaiensis E407-8]
Length = 302
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 147/309 (47%), Gaps = 24/309 (7%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
I+Y +YN+ + LHPFD K+ V A D I P ++ +
Sbjct: 3 IIYHEQYNIDVGIFKFLHPFDGCKFSK-------------VRAALNDADIIAPPGPIAAD 49
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
+L + E LK + E+ + + ++ L PMR+ V GTL A LAL
Sbjct: 50 AILGSLNELLKIQLKDKAALCRALEIPKIPFLSFSWLDSRILSPMRWGVSGTLTACRLAL 109
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST---AMIVDLDAHQGNG 289
+ N+ GG+HHAS + GFC Y DI++ + L S ++ +I+D+DAH GNG
Sbjct: 110 GGDDAWNLAGGYHHASPHRMEGFCIYNDINISYQQLIASGELTADDNILIIDIDAHHGNG 169
Query: 290 YEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+ F++ ++ +++ I + ++ + + L T + YL K+ A L++
Sbjct: 170 NARTFIDNPKVTLLDVYNADIYPIDTISRRRVNIAVPLPSGTGGELYLNKLAAALDQLST 229
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ +V AGTDVL DPLG L +S + + +LV+ + + +P V L GGY K+
Sbjct: 230 GYKLAFVV--AGTDVLATDPLGGLQLSVDDVAQCHKLVYQRLKALNIPTVFLGGGGYGKE 287
Query: 404 TARIIADSI 412
+A I I
Sbjct: 288 SAAAIVAGI 296
Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST 57
GTL A LAL + N+ GG+HHAS + GFC Y DI++ + L S ++
Sbjct: 100 GTLTACRLALGGDDAWNLAGGYHHASPHRMEGFCIYNDINISYQQLIASGELTA 153
>gi|428770468|ref|YP_007162258.1| histone deacetylase [Cyanobacterium aponinum PCC 10605]
gi|428684747|gb|AFZ54214.1| Histone deacetylase [Cyanobacterium aponinum PCC 10605]
Length = 300
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 135/315 (42%), Gaps = 50/315 (15%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY +Y L + H F K+K ++ L K + ITQ++ +P ++
Sbjct: 4 PVVYHSDY---VTPLPEQHRFPMPKFKLLYELLLKD--------QIITQESTYKPTIAND 52
Query: 172 EQLLIAHTEKYLK---------------SLKWSFNVAAISEVCPLVAVPNYFVQKCYLRP 216
+ L + H E Y+ L WS + + C V
Sbjct: 53 KLLQLVHNETYVSQFCDGTLDDKSKRRIGLPWSEGL--VKRTCTAV-------------- 96
Query: 217 MRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST 276
GGT+ LAL G N+ GG HHA G GFC + DI++ + L K ++
Sbjct: 97 -----GGTILTVQLALEHGICCNLAGGTHHAFPDYGSGFCIFNDIAIASRYLLIEKIVNK 151
Query: 277 AMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEK 333
+I+DLD HQG+G F ++ R+F + K+ I L +D YL+
Sbjct: 152 ILIIDLDVHQGDGTAFIFRDDERVFTFSMHCEANFPYRKQKSDLDIPLPIGLDDDGYLQI 211
Query: 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIV 393
+ L L+ PDI++Y+AG DV D LG L+++ GI RR+ +V P+
Sbjct: 212 LAFHLTDLLKQVKPDIVIYDAGVDVSGCDRLGKLSLTDTGIYRREMMVLSTCLAEGYPVA 271
Query: 394 MLTSGGYLKQTARII 408
+ GGY K ++
Sbjct: 272 GVIGGGYCKDLDELV 286
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G N+ GG HHA G GFC + DI++ + L K ++ +I+DL
Sbjct: 98 GTILTVQLALEHGICCNLAGGTHHAFPDYGSGFCIFNDIAIASRYLLIEKIVNKILIIDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|409201964|ref|ZP_11230167.1| histone deacetylase/AcuC/AphA family protein [Pseudoalteromonas
flavipulchra JG1]
Length = 301
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 135/303 (44%), Gaps = 28/303 (9%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEP-QEVSE 171
+ Y P Y+ L + H F K+K ++ + F AKFI EP Q+++
Sbjct: 2 LYYHPIYSE--LSLPEKHRFPISKYKKLYQRINASRF-----AKFIK-----EPEQKITA 49
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAG 228
+ L + H Y+ L + + AI ++ P V++ + +GG L A
Sbjct: 50 DALQLCHDSNYVDGFLNGTLSEKAIKKM----GFPWSEQLVERTLIS-----LGGGLAAA 100
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
AL G+ N+ GG+HHA G GFC + D +++ L + + +I D D HQG+
Sbjct: 101 KYALEYGFGANLSGGYHHAHRDFGSGFCIFNDWAVVAATLIAHQRVERVLIFDCDVHQGD 160
Query: 289 GYEKDFMNETRIFIMETCITS---KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
G + I S + K L T+D Y+ + L+ ++R +
Sbjct: 161 GTATIVADRNDIITCSIHCESNFPRIKPQSDLDFALPVNTQDAQYVATVREALQLAVRLY 220
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PDII+YNAG DV D LG ++S QG+ RD +VF A +P+ GGY +
Sbjct: 221 QPDIILYNAGADVYQGDELGHFSVSKQGVRARDSIVFEYAHHLNIPLAFALGGGYQRDVD 280
Query: 406 RII 408
++
Sbjct: 281 HLV 283
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G L A AL G+ N+ GG+HHA G GFC + D +++ L + + +I D
Sbjct: 95 GGLAAAKYALEYGFGANLSGGYHHAHRDFGSGFCIFNDWAVVAATLIAHQRVERVLIFDC 154
Query: 64 DAHQ 67
D HQ
Sbjct: 155 DVHQ 158
>gi|410637975|ref|ZP_11348545.1| histone deacetylase/AcuC/AphA family protein [Glaciecola lipolytica
E3]
gi|410142661|dbj|GAC15750.1| histone deacetylase/AcuC/AphA family protein [Glaciecola lipolytica
E3]
Length = 300
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 139/303 (45%), Gaps = 26/303 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+V+ P Y++ L H F +K++ I++ L + + + +P+ V+
Sbjct: 3 PLVFHPIYSI--LDLPVRHRFPIQKYQAIYSQLRE---------LGVPETQFYQPEPVAI 51
Query: 172 EQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+ L Y++ L + A+ + P + ++ R + GGTL A L
Sbjct: 52 DNLKQVFNPLYIQELTSGKLDAKAMRRI----GFP--WSEQLITRTLTA-AGGTLLASQL 104
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G +IN+ GG+HHA G GFC D+ L + + I +I D D HQG+G
Sbjct: 105 ALEYGKAINLTGGYHHAFANFGSGFCMVNDLYLSALQMLRHPQIDRVLIFDCDVHQGDGT 164
Query: 291 EKDFMNETRIFIMETCITSKA-----KEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
K + E I I + K+ L T D YL+ ++ L ++ SF
Sbjct: 165 AK--LAENNPNIKTVSIHGEKNFPHRKQQSDLDFPLPKGTTDFDYLDTVDCALNLAINSF 222
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PD ++Y+AG DV ND LG L IS QG+ RD+LVF + +P+ + GGY +
Sbjct: 223 QPDAVIYDAGVDVHENDDLGHLLISTQGVYLRDKLVFELCERKGLPVAAVIGGGYQRNID 282
Query: 406 RII 408
++
Sbjct: 283 ALV 285
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL A LAL G +IN+ GG+HHA G GFC D+ L + + I +I D
Sbjct: 97 GTLLASQLALEYGKAINLTGGYHHAFANFGSGFCMVNDLYLSALQMLRHPQIDRVLIFDC 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|228472500|ref|ZP_04057260.1| histone deacetylase family protein [Capnocytophaga gingivalis ATCC
33624]
gi|228275913|gb|EEK14669.1| histone deacetylase family protein [Capnocytophaga gingivalis ATCC
33624]
Length = 287
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 95/191 (49%), Gaps = 3/191 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
V GT++ AL G + NI GG HHA +G GFC D ++ L ++ +IV
Sbjct: 82 VQGTIDGAHYALEEGIAFNIAGGTHHAYSDRGEGFCMLNDQAVAAAYLLKTGRAKRILIV 141
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAG 337
DLD HQGNG + F + +F KE IEL T D+ YL +EA
Sbjct: 142 DLDVHQGNGTAEIFAHREEVFTFSMHARDNYPFVKEQSDKDIELPKQTTDKEYLSLLEAT 201
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L PD + Y +G DVL +D GLL +S +G +RD +VF + ++R +P+
Sbjct: 202 LPVLFEQHRPDFVFYQSGVDVLGSDRFGLLNLSIEGCAQRDRIVFEECQKRGIPVQCSMG 261
Query: 398 GGYLKQTARII 408
GGY + + I+
Sbjct: 262 GGYSPKLSIIL 272
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 14/130 (10%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++ AL G + NI GG HHA +G GFC D ++ L ++ +IVDL
Sbjct: 84 GTIDGAHYALEEGIAFNIAGGTHHAYSDRGEGFCMLNDQAVAAAYLLKTGRAKRILIVDL 143
Query: 64 DAHQFSDYYFPSAH-------SIKRKRKVEFLKERKALEDEITSEPQE----SVVTRPWP 112
D HQ + AH S+ + F+KE+ + E+ + + S++ P
Sbjct: 144 DVHQGNGTAEIFAHREEVFTFSMHARDNYPFVKEQSDKDIELPKQTTDKEYLSLLEATLP 203
Query: 113 IVY---RPEY 119
+++ RP++
Sbjct: 204 VLFEQHRPDF 213
>gi|390953897|ref|YP_006417655.1| deacetylase [Aequorivita sublithincola DSM 14238]
gi|390419883|gb|AFL80640.1| deacetylase, histone deacetylase/acetoin utilization protein
[Aequorivita sublithincola DSM 14238]
Length = 300
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 118/251 (47%), Gaps = 9/251 (3%)
Query: 161 DNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH 220
+N E + SEE +L HT++Y +SL N+ S + P + R +R
Sbjct: 41 ENFFESKMPSEEDILAVHTKEYFESL---VNLTIDSRAARKIGFP--LSEALIDRELRI- 94
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
GT+E AL+ G + NI GG HHA +G GFC D ++ K L + + +IV
Sbjct: 95 AQGTIEGSEHALKYGVAFNIAGGTHHAYTNRGEGFCMLNDQAIASKYLQNNGLANKILIV 154
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAG 337
DLD HQGNG + F+N+ +F KE I + + D+ YL+K++
Sbjct: 155 DLDVHQGNGTAEIFLNDDSVFTFSMHGAGNYPFNKEKSDLDIAIPDGSGDEVYLQKLKET 214
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L + + P I Y AG D+L D LG L + +G RD V ++ +P+ +
Sbjct: 215 LPKLVEEQKPGFIFYLAGVDILETDKLGRLNCTIEGCKERDRFVLQLCKDLHIPVQVSMG 274
Query: 398 GGYLKQTARII 408
GGY + II
Sbjct: 275 GGYSPEIKTII 285
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+E AL+ G + NI GG HHA +G GFC D ++ K L + + +IVDL
Sbjct: 97 GTIEGSEHALKYGVAFNIAGGTHHAYTNRGEGFCMLNDQAIASKYLQNNGLANKILIVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|348028362|ref|YP_004871048.1| histone deacetylase family protein [Glaciecola nitratireducens
FR1064]
gi|347945705|gb|AEP29055.1| histone deacetylase family protein [Glaciecola nitratireducens
FR1064]
Length = 298
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 98/190 (51%), Gaps = 3/190 (1%)
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 281
GGT+ LA+ G ++N+ GG+HHA G GFC D+ L + QS SI +I D
Sbjct: 96 GGTVLTSTLAIEYGKALNLTGGYHHAFGNFGSGFCMVNDLYLAALNMLQSPSIDKVLIFD 155
Query: 282 LDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGL 338
D HQG+G K N + ++ + K+ L T D YL +E
Sbjct: 156 CDVHQGDGTAKLAANNSAVYTVSIHGEKNFPHRKQVSDLDFGLTKGTGDDEYLATVEQAW 215
Query: 339 ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSG 398
+ ++ F PD ++Y+AG DV ++D LG L I+ +G++ RD+ VF + ++ +PI + G
Sbjct: 216 QMAMTYFQPDAVIYDAGVDVHIDDDLGHLNITTEGVLARDKFVFAECKKMGLPIAAVIGG 275
Query: 399 GYLKQTARII 408
GY + ++
Sbjct: 276 GYQRDIDALV 285
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LA+ G ++N+ GG+HHA G GFC D+ L + QS SI +I D
Sbjct: 97 GTVLTSTLAIEYGKALNLTGGYHHAFGNFGSGFCMVNDLYLAALNMLQSPSIDKVLIFDC 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|301298973|gb|ADK66830.1| putative histone deacetylase superfamily protein [Amphidinium
carterae]
Length = 337
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 99/194 (51%), Gaps = 6/194 (3%)
Query: 221 VGGTLEAGFLALRRG-WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMI 279
VG TL A L G WS + GG HHA + G GFC + DI++ +L I + ++
Sbjct: 135 VGATLAATRNCLESGVWSGAVSGGTHHAFASSGEGFCVFNDIAVAARLAAVDYGIKSMLV 194
Query: 280 VDLDAHQGNGYEKDFMNETRIFIMETCITSKAKEAIRC----RIELAPYTEDQHYLEKIE 335
VDLD HQGNG F ++ +F + RC I L ED Y+E ++
Sbjct: 195 VDLDVHQGNGTAGIFKDDPNVFTFSVHQAKGYPFSTRCASDIDIGLHDGCEDDVYMESLQ 254
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
A L P+++ Y +G D L D G LA+S +G+ RR+ELV+ A E VP+V+
Sbjct: 255 A-LPAVFDRCRPELVFYQSGVDGLRGDRFGRLALSQEGLQRRNELVYNLALEYDVPVVVT 313
Query: 396 TSGGYLKQTARIIA 409
GGY K AR +A
Sbjct: 314 MGGGYHKDIARTVA 327
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 5 TLEAGFLALRRG-WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
TL A L G WS + GG HHA + G GFC + DI++ +L I + ++VDL
Sbjct: 138 TLAATRNCLESGVWSGAVSGGTHHAFASSGEGFCVFNDIAVAARLAAVDYGIKSMLVVDL 197
Query: 64 DAHQ 67
D HQ
Sbjct: 198 DVHQ 201
>gi|428213576|ref|YP_007086720.1| deacetylase [Oscillatoria acuminata PCC 6304]
gi|428001957|gb|AFY82800.1| deacetylase, histone deacetylase/acetoin utilization protein
[Oscillatoria acuminata PCC 6304]
Length = 305
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 133/315 (42%), Gaps = 50/315 (15%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY P+Y L H F +K++ ++ L + + +T + P+ +
Sbjct: 4 PIVYHPDYVA---PLPPSHRFPMEKFRLLYEML--------LGDRVVTPEQCHTPELPPQ 52
Query: 172 EQLLIAHTEKYLKS---------------LKWSFNVAAISEVCPLVAVPNYFVQKCYLRP 216
+ + H Y+++ L W+ +A + +
Sbjct: 53 DWIESVHDPAYVQAYCQGTLDPKAQRRIGLPWTEAIAHRTCI------------------ 94
Query: 217 MRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST 276
+GG + LAL G + N GG HHA G GFC + D+++ +++ + I
Sbjct: 95 ---SIGGAILTAKLALEHGLACNTAGGTHHAFPDFGSGFCIFNDLAIATRMIQKLAGIRK 151
Query: 277 AMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEK 333
+IVDLD HQG+G F N+ +F + K+A + L ED YL+
Sbjct: 152 VLIVDLDVHQGDGTAFIFKNDPDVFTFSLHCEANFPGRKQASDLDVPLPVGMEDDEYLQT 211
Query: 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIV 393
+ L L F PD+++Y+AG DV D LG LA+S GI RRD V R P+
Sbjct: 212 VAHYLPDLLSQFQPDLVLYDAGVDVHAGDRLGKLALSDTGIFRRDMQVLSTCLAARYPVA 271
Query: 394 MLTSGGYLKQTARII 408
+ GGY + ++
Sbjct: 272 CVIGGGYCEDMRGLV 286
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G + LAL G + N GG HHA G GFC + D+++ +++ + I +IVDL
Sbjct: 98 GAILTAKLALEHGLACNTAGGTHHAFPDFGSGFCIFNDLAIATRMIQKLAGIRKVLIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|383453278|ref|YP_005367267.1| histone deacetylase family protein [Corallococcus coralloides DSM
2259]
gi|380727969|gb|AFE03971.1| histone deacetylase family protein [Corallococcus coralloides DSM
2259]
Length = 299
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 96/191 (50%), Gaps = 3/191 (1%)
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
R VGGTL A AL G+ N+ GG HHA G GFC + DI++ +++L +I A
Sbjct: 91 RASVGGTLAAARAALEDGFGANLAGGTHHAFPDHGEGFCVFNDIAVAIRVLQAEGAIRRA 150
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
++VDLD HQGNG F + +F K A + L D YL +
Sbjct: 151 VVVDLDVHQGNGTAAVFAGDPSVFTFSMHGEHNFPFRKHASHLDLGLEDGVGDAEYLAVL 210
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
+A L L S D++ + AG D L D LG L+++ G+ RD V A+ER +P+V+
Sbjct: 211 DAHLPHVLESAHADLLFFQAGVDPLEEDTLGRLSLTHAGLRERDLRVMRAAKERGLPVVL 270
Query: 395 LTSGGYLKQTA 405
GGY + A
Sbjct: 271 TLGGGYARPLA 281
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL A AL G+ N+ GG HHA G GFC + DI++ +++L +I A++VDL
Sbjct: 96 GTLAAARAALEDGFGANLAGGTHHAFPDHGEGFCVFNDIAVAIRVLQAEGAIRRAVVVDL 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|421098269|ref|ZP_15558940.1| histone deacetylase family protein [Leptospira borgpetersenii str.
200901122]
gi|410798537|gb|EKS00626.1| histone deacetylase family protein [Leptospira borgpetersenii str.
200901122]
Length = 270
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 119/243 (48%), Gaps = 9/243 (3%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
+ +P+ ++ L + HT+++LK F I+E +P + K ++ VG
Sbjct: 17 VYKPEPAKDKDLALVHTKEFLKD----FFSLKITERTQYSELP---LTKQIVQSFVLAVG 69
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
GT+ A L + + +IGGGFHH+ + GFC D ++ VKL ++ + +DL
Sbjct: 70 GTILATELTEKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIAVKLYQRTYPGRKILFIDL 129
Query: 283 DAHQGNGYEKDFMNETRIFI--METCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLER 340
D HQGNG F ++ +F M KE I L T+D YLE + L +
Sbjct: 130 DLHQGNGNSVVFQEDSDVFTFSMHQENLYPKKEKSGLDIPLEEGTDDGKYLELLVESLRK 189
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
F PD+I Y AG D D LG L ++ QG+ +RD++V R VP V+L +GGY
Sbjct: 190 IESDFKPDLIFYIAGADPFEGDSLGDLKLTLQGLRKRDKIVRDFVRALDVPAVILPAGGY 249
Query: 401 LKQ 403
K
Sbjct: 250 AKD 252
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A L + + +IGGGFHH+ + GFC D ++ VKL ++ + +DL
Sbjct: 70 GTILATELTEKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIAVKLYQRTYPGRKILFIDL 129
Query: 64 DAHQ 67
D HQ
Sbjct: 130 DLHQ 133
>gi|148556816|ref|YP_001264398.1| histone deacetylase superfamily protein [Sphingomonas wittichii
RW1]
gi|148502006|gb|ABQ70260.1| histone deacetylase superfamily [Sphingomonas wittichii RW1]
Length = 315
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 99/196 (50%), Gaps = 10/196 (5%)
Query: 209 VQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLL 268
++ +L P GGT A LALR G++ N GG HHA G G+C + D+++ L
Sbjct: 86 ARRAFLAP-----GGTWLAAKLALRHGYAANGAGGSHHAMADSGAGYCVFNDLAIAANRL 140
Query: 269 FQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPY 324
+ + MIVDLD HQG+G IF + + + A + R + L
Sbjct: 141 IVERDAARIMIVDLDVHQGDGTAVLTAGRPDIFTF-SIHSERNFPARKARSSFDLGLPDD 199
Query: 325 TEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMK 384
T+D YL + L ++ +F PD+I+Y AG D D LG LA+S +G+ RD V +
Sbjct: 200 TDDADYLAALAGHLPAAIDAFAPDLILYQAGVDPHREDKLGRLALSDEGLADRDRFVMRQ 259
Query: 385 ARERRVPIVMLTSGGY 400
AR R +P+ + GGY
Sbjct: 260 ARRRGIPLASVLGGGY 275
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A LALR G++ N GG HHA G G+C + D+++ L + + MIVDL
Sbjct: 95 GTWLAAKLALRHGYAANGAGGSHHAMADSGAGYCVFNDLAIAANRLIVERDAARIMIVDL 154
Query: 64 DAHQ 67
D HQ
Sbjct: 155 DVHQ 158
>gi|67925050|ref|ZP_00518430.1| Histone deacetylase superfamily [Crocosphaera watsonii WH 8501]
gi|67853097|gb|EAM48476.1| Histone deacetylase superfamily [Crocosphaera watsonii WH 8501]
Length = 305
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 100/191 (52%), Gaps = 3/191 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
VGGT+ LAL+ G + N GG HHA G GFC + D+++ +L Q K + +I+
Sbjct: 96 VGGTILTAKLALKFGLACNTAGGTHHAFPNYGSGFCIFNDLAIATCVLQQLKLVQKVLII 155
Query: 281 DLDAHQGNGYEKDFMNETRIFIMET-CITSKAKEAIRCRIELA--PYTEDQHYLEKIEAG 337
DLD HQG+G K F N+ +F C ++ +E + +++A +D YL+ +
Sbjct: 156 DLDVHQGDGTAKIFENDETVFTFSMHCESNFPREKQKSDLDVALPKGLDDDGYLQILSQY 215
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L L PD+I+Y+AG D+ ND G L+++ GI RR+ LV P+ +
Sbjct: 216 LPDLLSEIKPDLILYDAGVDIHANDHFGKLSLTDTGIYRREMLVLSSCIAEGYPVASVIG 275
Query: 398 GGYLKQTARII 408
GGY K ++
Sbjct: 276 GGYAKDLKSLV 286
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL+ G + N GG HHA G GFC + D+++ +L Q K + +I+DL
Sbjct: 98 GTILTAKLALKFGLACNTAGGTHHAFPNYGSGFCIFNDLAIATCVLQQLKLVQKVLIIDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|319792622|ref|YP_004154262.1| histone deacetylase [Variovorax paradoxus EPS]
gi|315595085|gb|ADU36151.1| Histone deacetylase [Variovorax paradoxus EPS]
Length = 311
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 116/248 (46%), Gaps = 15/248 (6%)
Query: 169 VSEEQLLIAHTEKYLKSLK-WSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA 227
S+ +L +AHT +++ ++ S + A+ E+ + + + R G T+ A
Sbjct: 49 ASDGELALAHTPQWIAAINDGSVSPQAMREI-------GFPWSEAMVERSRRSTGATIAA 101
Query: 228 GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLL----FQSKSISTAMIVDLD 283
A G + N+ GG HHA KGGGFC + D ++ +L+ ++ + ++DLD
Sbjct: 102 CRAAFAGGIAANMAGGTHHAYADKGGGFCVFNDAAVAARLMQAEHGRTGRLLKVAVIDLD 161
Query: 284 AHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLER 340
HQGNG F N+ +F + KEA +EL D YL +E L+
Sbjct: 162 VHQGNGTASIFRNDPSVFTLSMHGQKNFPFRKEASDLDVELPDGCGDADYLTALEHALDE 221
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
R F P +++Y AG D D LG L +S G+ RD VF +RR+P+ +GGY
Sbjct: 222 LDRRFSPGLVIYLAGADPFERDRLGRLKLSFDGLEARDRRVFDWTWQRRIPVAFAMAGGY 281
Query: 401 LKQTARII 408
A +
Sbjct: 282 ASDIAETV 289
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLL----FQSKSISTAMI 60
T+ A A G + N+ GG HHA KGGGFC + D ++ +L+ ++ + +
Sbjct: 98 TIAACRAAFAGGIAANMAGGTHHAYADKGGGFCVFNDAAVAARLMQAEHGRTGRLLKVAV 157
Query: 61 VDLDAHQ 67
+DLD HQ
Sbjct: 158 IDLDVHQ 164
>gi|255531938|ref|YP_003092310.1| histone deacetylase [Pedobacter heparinus DSM 2366]
gi|255344922|gb|ACU04248.1| Histone deacetylase [Pedobacter heparinus DSM 2366]
Length = 299
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 123/263 (46%), Gaps = 16/263 (6%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEV---CPLVAVPNYF 208
L+ I+ N+ EP + EE +L AH + Y + LK S ++ A + PL A
Sbjct: 32 LLHEGLISAANLFEPGLLEEEVVLYAHQKAYWEQLK-SLSLPAREQRRIGFPLTA----- 85
Query: 209 VQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLL 268
+ R +R GT++ AL+ G + N+ GG HHA G GFC D ++ L
Sbjct: 86 --QLLEREIRI-AKGTVDGSGYALQYGIAFNVAGGTHHAGSNWGEGFCLLNDQAIAANYL 142
Query: 269 FQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYT 325
+ +I+DLD HQGNG + F NE R+F KE I L T
Sbjct: 143 LNNGLAKHILIIDLDVHQGNGTAEIFENEPRVFTFSMHGDKNFPFRKEKSDLDIALGDGT 202
Query: 326 EDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKA 385
D +L K++ L L + PD + Y +G DVL +D LG LA+S +G RD +V
Sbjct: 203 GDAEFLSKLKESLPL-LLAHRPDFVFYLSGVDVLASDKLGKLALSKEGCRERDRMVLQFC 261
Query: 386 RERRVPIVMLTSGGYLKQTARII 408
++ +P+ + GGY I+
Sbjct: 262 KDHHLPVQVSMGGGYSPAIKDIV 284
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++ AL+ G + N+ GG HHA G GFC D ++ L + +I+DL
Sbjct: 97 GTVDGSGYALQYGIAFNVAGGTHHAGSNWGEGFCLLNDQAIAANYLLNNGLAKHILIIDL 156
Query: 64 DAHQ-------FSDYYFPSAHSIKRKRKVEFLKERKAL---------EDEITSEPQESVV 107
D HQ F + S+ + F KE+ L + E S+ +ES+
Sbjct: 157 DVHQGNGTAEIFENEPRVFTFSMHGDKNFPFRKEKSDLDIALGDGTGDAEFLSKLKESL- 215
Query: 108 TRPWPIVYRPEY 119
P + +RP++
Sbjct: 216 --PLLLAHRPDF 225
>gi|374596386|ref|ZP_09669390.1| histone deacetylase superfamily [Gillisia limnaea DSM 15749]
gi|373871025|gb|EHQ03023.1| histone deacetylase superfamily [Gillisia limnaea DSM 15749]
Length = 300
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 119/254 (46%), Gaps = 11/254 (4%)
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLK-WSFNVAAISEVCPLVAVPNYFVQKCYLRPM 217
T+ N EP+ E +L H E Y +SL+ S + A ++ + + + +
Sbjct: 39 TEANFFEPEMPEEAAILAVHDENYFRSLQDLSLDKRAERKI-------GFPLSEALVSRE 91
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
+ GT++A AL+ G ++NI GG HHA G FC D ++ + L ++K
Sbjct: 92 QIIADGTIKASEFALQYGIAMNIAGGTHHAYTNHGEAFCLLNDQAIAARYLQKNKLAKKI 151
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
+IVDLD HQGNG + F N+ +F + KE I + T D+ YL+ +
Sbjct: 152 LIVDLDVHQGNGTAEIFANDDSVFTFSIHGRNNYPFKKEHSDLDIAMPDGTGDKEYLKIL 211
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
+ L + + P+ I Y +G D+L D LG L +P+G RD V + ++P+ +
Sbjct: 212 KDTLPKLIEQQQPNFIFYLSGVDILSTDKLGKLGCTPEGCKERDRFVLQLLKNSKIPVEV 271
Query: 395 LTSGGYLKQTARII 408
GGY II
Sbjct: 272 SMGGGYSPDIKTII 285
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++A AL+ G ++NI GG HHA G FC D ++ + L ++K +IVDL
Sbjct: 97 GTIKASEFALQYGIAMNIAGGTHHAYTNHGEAFCLLNDQAIAARYLQKNKLAKKILIVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|307154340|ref|YP_003889724.1| histone deacetylase [Cyanothece sp. PCC 7822]
gi|306984568|gb|ADN16449.1| Histone deacetylase [Cyanothece sp. PCC 7822]
Length = 303
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 131/300 (43%), Gaps = 20/300 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY P Y L H F K+K +++ L + T ++ P+ +
Sbjct: 3 PIVYHPNY---VTPLPDGHRFPMPKFKLLYDLL--------ITDGITTPEHTHIPEVPAR 51
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E + + HT +Y+++ L P + C V GT+ LA
Sbjct: 52 EIIELVHTPEYVQAYYGGTLDPKAQRRIGLPWSPGLVTRTCTA------VAGTILTAQLA 105
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L+ G + N GG HHA + G GFC + D+++ + L Q + + +I+DLD HQG+G
Sbjct: 106 LKYGLACNTAGGTHHAFPSFGSGFCIFNDLAIATRRLQQLELVKKVLIIDLDVHQGDGTA 165
Query: 292 KDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
F N+ +F + K+ + LA +D+ YL+ + L L PD
Sbjct: 166 YIFQNDESVFTFSMHCEANFPGTKQKSDLDVPLAVGLDDEGYLKILSQYLPDLLGEVNPD 225
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
+++Y+AG D + D LG L +S GI RRD V P+ + GGY K ++
Sbjct: 226 LVLYDAGVDTHIEDRLGKLCMSNIGIYRRDIQVLSTCVAAGYPVAAVIGGGYAKDFQNLV 285
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL+ G + N GG HHA + G GFC + D+++ + L Q + + +I+DL
Sbjct: 97 GTILTAQLALKYGLACNTAGGTHHAFPSFGSGFCIFNDLAIATRRLQQLELVKKVLIIDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|359728114|ref|ZP_09266810.1| deacetylase [Leptospira weilii str. 2006001855]
gi|417781407|ref|ZP_12429159.1| histone deacetylase family protein [Leptospira weilii str.
2006001853]
gi|410778658|gb|EKR63284.1| histone deacetylase family protein [Leptospira weilii str.
2006001853]
Length = 270
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 119/243 (48%), Gaps = 9/243 (3%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
+ +P+ ++ L + HT+++LK F I+E +P + K ++ VG
Sbjct: 17 VYKPEPARDKDLALVHTKEFLKD----FFSLKITERTQYSELP---LTKQIVQSFVLAVG 69
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
GT+ A L + + +IGGGFHH+ + GFC D ++ VKL ++ + +DL
Sbjct: 70 GTILATELTGKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIAVKLYQKAYPGRKILFIDL 129
Query: 283 DAHQGNGYEKDFMNETRIFI--METCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLER 340
D HQGNG F ++ +F M KE I L T+D YLE + L +
Sbjct: 130 DLHQGNGNSVIFQEDSNVFTFSMHQENLYPKKEKSGLDIPLEEGTDDGKYLELLLESLRK 189
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
F PD+I Y AG D D LG L ++ QG+ +RD++V R VP V+L +GGY
Sbjct: 190 IESDFKPDLIFYIAGADPFEGDSLGDLKLTLQGLRKRDKIVRDFVRTLDVPAVILPAGGY 249
Query: 401 LKQ 403
K
Sbjct: 250 AKD 252
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A L + + +IGGGFHH+ + GFC D ++ VKL ++ + +DL
Sbjct: 70 GTILATELTGKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIAVKLYQKAYPGRKILFIDL 129
Query: 64 DAHQ 67
D HQ
Sbjct: 130 DLHQ 133
>gi|127513415|ref|YP_001094612.1| histone deacetylase superfamily protein [Shewanella loihica PV-4]
gi|126638710|gb|ABO24353.1| histone deacetylase superfamily [Shewanella loihica PV-4]
Length = 300
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 137/300 (45%), Gaps = 29/300 (9%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY Y+ L H F K++ ++ YL ++ + + P+ VS
Sbjct: 3 PLVYHASYSQ--LALPHHHRFPITKYQALYQYL--------LDRQIVDPTAFHSPEAVSL 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGF 229
E L H Y+ I + P AV + + + + Y VGGT A
Sbjct: 53 EWLKSIHCPDYVMQF--------IEQRLPDKAVRRLGFPLSERLTQRTLYSVGGTHLACE 104
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQGN 288
LA+R G ++ + GG+HHA G G+C + D+ + L QS I T +I D D HQG+
Sbjct: 105 LAVRHGVALQLSGGYHHAHYQFGSGYCVFNDL-ISAALHAQSLAGIVTVLIFDCDVHQGD 163
Query: 289 GYEK-----DFMNETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
G D + I E K + +EL+ D+ YLE + L ++R
Sbjct: 164 GTAAMGQAYDNLYTCSIHCQENFPARKQTSDLD--LELSRGVGDEEYLEAVAQTLALAIR 221
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+I+Y+AG DV D LG L I+ +GI +RD LV A+ +PI + GGY K+
Sbjct: 222 LYQPDLIIYDAGVDVHQADRLGHLNITTEGIYQRDRLVLDNAKAASIPIACVVGGGYSKE 281
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT A LA+R G ++ + GG+HHA G G+C + D+ + L QS I T +I D
Sbjct: 98 GTHLACELAVRHGVALQLSGGYHHAHYQFGSGYCVFNDL-ISAALHAQSLAGIVTVLIFD 156
Query: 63 LDAHQ 67
D HQ
Sbjct: 157 CDVHQ 161
>gi|393776833|ref|ZP_10365127.1| histone deacetylase [Ralstonia sp. PBA]
gi|392716190|gb|EIZ03770.1| histone deacetylase [Ralstonia sp. PBA]
Length = 310
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 118/253 (46%), Gaps = 15/253 (5%)
Query: 165 EPQEVSEEQLLIAHTEKYLKSLK-WSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGG 223
E S+ LL+AHT++Y++ + + A E+ + + + R G
Sbjct: 42 EAPRASDADLLLAHTDEYVQKVSAGTLEPARQREI-------GFPWSEAMVERSRRSAGA 94
Query: 224 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST----AMI 279
T+ A A+R G ++N+ GG HHA KGGGFC + D ++ + L Q +
Sbjct: 95 TIAACRQAMRDGIAVNLAGGTHHAYADKGGGFCVFNDSAIAARRLQQDADAEGRQLRVAV 154
Query: 280 VDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEA 336
+DLD HQGNG ++ +F + KEA + L D YL+ ++
Sbjct: 155 IDLDVHQGNGTASILRDDATVFTLSLHGERNYPFRKEASDLDVGLPDGCSDAQYLDALQG 214
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
L+ L F P +++Y AG D D LG L ++ G+ RD++VF A +PI +
Sbjct: 215 ALDLMLGRFVPGLLIYLAGADPHEGDGLGRLRLTMDGLAERDQMVFDVACTHGIPIAVTM 274
Query: 397 SGGYLKQTARIIA 409
+GGY + A +A
Sbjct: 275 AGGYGSEIAHTVA 287
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST----AMI 60
T+ A A+R G ++N+ GG HHA KGGGFC + D ++ + L Q +
Sbjct: 95 TIAACRQAMRDGIAVNLAGGTHHAYADKGGGFCVFNDSAIAARRLQQDADAEGRQLRVAV 154
Query: 61 VDLDAHQ 67
+DLD HQ
Sbjct: 155 IDLDVHQ 161
>gi|359449448|ref|ZP_09238941.1| histone deacetylase family protein [Pseudoalteromonas sp. BSi20480]
gi|358044758|dbj|GAA75190.1| histone deacetylase family protein [Pseudoalteromonas sp. BSi20480]
Length = 299
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 125/258 (48%), Gaps = 20/258 (7%)
Query: 165 EPQEVSEEQLLIAHTEKYLKS-LKWSFNVAAISEVC-PLVAVPNYFVQKCYLRPMRYHVG 222
+P + QL + H+E+Y+ + L + + AI ++ P A V++ L VG
Sbjct: 44 QPAKARPSQLALCHSEQYINNFLTGNLSDKAIKKMGFPYSA---QLVERTLLS-----VG 95
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
G+++A AL+ G + N+ GG+HHA G GFC + D+++ L + T +I D
Sbjct: 96 GSIQAAEEALKSGLTCNLSGGYHHAYSDYGSGFCIFNDLAIAATHLLNTHKAKTVLIFDC 155
Query: 283 DAHQGNGYEKDFMNETRIFIMETCITS-----KAKEAIRCRIELAPYTEDQHYLEKIEAG 337
D HQG+G + ++ I+ I + K+ L + D Y++ ++
Sbjct: 156 DVHQGDGTAQIINQQSHKNIITCSIHCEQNFPRLKQQSDYDFSLPAKSGDDEYIDTLQHA 215
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L + PDII+YNAG D+ D LGLL +S G+ RD V ++ +P++
Sbjct: 216 LALCVSIHQPDIILYNAGADIYTKDELGLLNVSITGVYERDLFVLDFCKQHNIPLMCGLG 275
Query: 398 GGYLKQTARIIADSILNL 415
GGY + DS++N+
Sbjct: 276 GGYQRNL-----DSLINV 288
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+++A AL+ G + N+ GG+HHA G GFC + D+++ L + T +I D
Sbjct: 96 GSIQAAEEALKSGLTCNLSGGYHHAYSDYGSGFCIFNDLAIAATHLLNTHKAKTVLIFDC 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|86134858|ref|ZP_01053440.1| deacetylase [Polaribacter sp. MED152]
gi|85821721|gb|EAQ42868.1| deacetylase [Polaribacter sp. MED152]
Length = 300
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 108/251 (43%), Gaps = 9/251 (3%)
Query: 161 DNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH 220
+N EP+ + H Y L N+ + + P + + +
Sbjct: 41 ENFFEPEIPDNKHFFTVHEPDYFFDL---LNITLDQKAARKIGFP---LSEVLIEREMVI 94
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
GT++A ALR G ++NI GG HHA +G FC D ++ K L + +IV
Sbjct: 95 ADGTMKASEFALRNGIAMNIAGGTHHAFSNRGEAFCMLNDQAIAAKYLQHKNLVKKVLIV 154
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAG 337
DLD HQGNG + F N+ +F S KE+ I L T D +L ++
Sbjct: 155 DLDVHQGNGTAEIFANDNSVFTFSMHGKSNYPFIKESSDLDIALENDTNDDEFLSILKKT 214
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L + S PD I Y G DVL D LG L +S +G RD V + ++P++
Sbjct: 215 LPNLIESEQPDFIYYLCGVDVLATDKLGKLGMSLEGCKERDRFVLQTCFDTKIPVMCSMG 274
Query: 398 GGYLKQTARII 408
GGY K ++
Sbjct: 275 GGYSKDVNIVV 285
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++A ALR G ++NI GG HHA +G FC D ++ K L + +IVDL
Sbjct: 97 GTMKASEFALRNGIAMNIAGGTHHAFSNRGEAFCMLNDQAIAAKYLQHKNLVKKVLIVDL 156
Query: 64 DAHQ-------FSDYYFPSAHSIKRKRKVEFLKERK----ALEDEITSEPQESVVTRPWP 112
D HQ F++ S+ K F+KE ALE++ + S++ + P
Sbjct: 157 DVHQGNGTAEIFANDNSVFTFSMHGKSNYPFIKESSDLDIALENDTNDDEFLSILKKTLP 216
Query: 113 IVYRPE 118
+ E
Sbjct: 217 NLIESE 222
>gi|416407187|ref|ZP_11688248.1| Histone deacetylase superfamily [Crocosphaera watsonii WH 0003]
gi|357260908|gb|EHJ10237.1| Histone deacetylase superfamily [Crocosphaera watsonii WH 0003]
Length = 283
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 100/191 (52%), Gaps = 3/191 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
VGGT+ LAL+ G + N GG HHA G GFC + D+++ +L Q K + +I+
Sbjct: 74 VGGTILTAKLALKFGLACNTAGGTHHAFPNYGSGFCIFNDLAIATCVLQQLKLVQKVLII 133
Query: 281 DLDAHQGNGYEKDFMNETRIFIMET-CITSKAKEAIRCRIELA--PYTEDQHYLEKIEAG 337
DLD HQG+G K F N+ +F C ++ +E + +++A +D YL+ +
Sbjct: 134 DLDVHQGDGTAKIFENDETVFTFSMHCESNFPREKQKSDLDVALPKGLDDDGYLQILSQY 193
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L L PD+I+Y+AG D+ ND G L+++ GI RR+ LV P+ +
Sbjct: 194 LPDLLSEIKPDLILYDAGVDIHANDHFGKLSLTDTGIYRREMLVLSSCIAEGYPVASVIG 253
Query: 398 GGYLKQTARII 408
GGY K ++
Sbjct: 254 GGYAKDLKSLV 264
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL+ G + N GG HHA G GFC + D+++ +L Q K + +I+DL
Sbjct: 76 GTILTAKLALKFGLACNTAGGTHHAFPNYGSGFCIFNDLAIATCVLQQLKLVQKVLIIDL 135
Query: 64 DAHQ 67
D HQ
Sbjct: 136 DVHQ 139
>gi|333892281|ref|YP_004466156.1| histone deacetylase superfamily protein [Alteromonas sp. SN2]
gi|332992299|gb|AEF02354.1| histone deacetylase superfamily protein [Alteromonas sp. SN2]
Length = 298
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 95/191 (49%), Gaps = 3/191 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
V GT LA++ G ++N+ GG+HHA G GFC + D+ L K + + I +I+
Sbjct: 95 VAGTCLTAELAIKHGKALNLTGGYHHAFSDFGSGFCLFNDLFLAAKAMQKFSGIDNVLII 154
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAG 337
D D HQG+G K + IF + K+ I +A ED YL ++
Sbjct: 155 DFDVHQGDGTAKLTQYDNSIFTVSVHGEKNFPYRKQHSNIDIGMAKGCEDDEYLNAVQET 214
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L F D I+Y+AG D+ +ND LGLL I+ +G+ RD++ F A +PI +
Sbjct: 215 LAMVAMQFQADAIIYDAGVDIHINDDLGLLNITTEGVSARDDMAFAFAERMGIPIAAVIG 274
Query: 398 GGYLKQTARII 408
GGY + ++
Sbjct: 275 GGYQRDIDALV 285
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LA++ G ++N+ GG+HHA G GFC + D+ L K + + I +I+D
Sbjct: 97 GTCLTAELAIKHGKALNLTGGYHHAFSDFGSGFCLFNDLFLAAKAMQKFSGIDNVLIIDF 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|399018524|ref|ZP_10720701.1| deacetylase, histone deacetylase/acetoin utilization protein
[Herbaspirillum sp. CF444]
gi|398101438|gb|EJL91660.1| deacetylase, histone deacetylase/acetoin utilization protein
[Herbaspirillum sp. CF444]
Length = 280
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 3/195 (1%)
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
R G T+ A A+ +G ++N+ GG HHA G GFC + D ++ +L+ + +S
Sbjct: 69 RRSAGATIAACRSAMEQGVAVNLAGGTHHAYADHGAGFCVFNDAAVASRLMQAERRVSRV 128
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
+VDLD HQGNG N+ +F + KE + L D YL +
Sbjct: 129 AVVDLDVHQGNGTASILANDDSVFTLSLHGERNYPFEKEQSDLDVALPDGVTDVEYLSAL 188
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
+ L + ++ F P +I+Y AG D D LG + +S G+ RD +VF R++++PI +
Sbjct: 189 QDALAQLMQRFDPQLIIYLAGADPHEGDRLGRMKLSLAGLAERDRMVFELGRQQKIPIAV 248
Query: 395 LTSGGYLKQTARIIA 409
+GGY K +A
Sbjct: 249 TMAGGYGKNIEDTVA 263
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
T+ A A+ +G ++N+ GG HHA G GFC + D ++ +L+ + +S +VDLD
Sbjct: 75 TIAACRSAMEQGVAVNLAGGTHHAYADHGAGFCVFNDAAVASRLMQAERRVSRVAVVDLD 134
Query: 65 AHQ 67
HQ
Sbjct: 135 VHQ 137
>gi|94970928|ref|YP_592976.1| histone deacetylase superfamily protein [Candidatus Koribacter
versatilis Ellin345]
gi|94552978|gb|ABF42902.1| histone deacetylase superfamily [Candidatus Koribacter versatilis
Ellin345]
Length = 357
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 147/340 (43%), Gaps = 54/340 (15%)
Query: 105 SVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNII 164
SV P+ +VY Y + + H F ++K++ + L L E TQD +
Sbjct: 20 SVSMLPFKLVYSDHYRLPLGE----HVFPTQKYELVKQEL-------LEEGVASTQD-FL 67
Query: 165 EPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGT 224
P +E +L+ H+ Y+ L + A E+ + + VQ +H GGT
Sbjct: 68 TPTPATEADVLLVHSHFYVDKL-IEGTLTAREELALEIPYSHEAVQA-----FLWHTGGT 121
Query: 225 LEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDA 284
+ A AL G + N+GGGFHHA G GFC D+++ ++ L + I M +D D
Sbjct: 122 ILAAERALSDGVAFNLGGGFHHAYPDHGEGFCMIHDVAVAIRKLQKQGRIQRVMTLDCDV 181
Query: 285 HQGNGY------EKDFMNETRIFIMETCITSKAKEAIRCR-------------------- 318
HQGNG +D +E + I ++ + R
Sbjct: 182 HQGNGTAVIFAKHRDENSEALPSRSTSTIGNRLSGTMLERGADDVFTISLHQENNYPLQK 241
Query: 319 ------IELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQ 372
+ L T D Y+ ++ + R F PD++ Y AG D D LG L ++
Sbjct: 242 PPSSIDVNLPDGTTDSEYIAWLDNAISSGFRQFQPDLLCYIAGADPYKEDQLGGLNLTID 301
Query: 373 GIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSI 412
G+ RDELVF AR + +P+++ +GGY AR I D++
Sbjct: 302 GLKHRDELVFQAARAKGIPVMVTFAGGY----ARKIQDTV 337
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A AL G + N+GGGFHHA G GFC D+++ ++ L + I M +D
Sbjct: 120 GTILAAERALSDGVAFNLGGGFHHAYPDHGEGFCMIHDVAVAIRKLQKQGRIQRVMTLDC 179
Query: 64 DAHQ 67
D HQ
Sbjct: 180 DVHQ 183
>gi|124006476|ref|ZP_01691309.1| histone deacetylase superfamily [Microscilla marina ATCC 23134]
gi|123987889|gb|EAY27569.1| histone deacetylase superfamily [Microscilla marina ATCC 23134]
Length = 300
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 118/254 (46%), Gaps = 15/254 (5%)
Query: 161 DNIIEPQEVSEEQLLIAHTEKY---LKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPM 217
D+ P V+EE +L AH Y LK+L+ S A + PL A V + +
Sbjct: 41 DSFFAPLPVAEEWILKAHDPVYWQRLKNLELSHKEARRTGF-PLSA---GLVHREIVIAQ 96
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
GT++ AL G S+NI GG HHA +G GFC DI++ L + +
Sbjct: 97 -----GTIDCALYALELGVSLNIAGGTHHAFTDRGEGFCLLNDIAIAAHYLLDKQLATKV 151
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
+++DLD HQGNG + F + R+F KE I L D YL +
Sbjct: 152 LVIDLDVHQGNGTAEIFQYDNRVFTFSMHGAKNYPLRKEISDLDIALPDGANDMTYLTTL 211
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
L + PD + + +G DVL D LG L +S G +RD++VF ++ ++PI +
Sbjct: 212 RKTLPGLVAEVKPDFVFFQSGVDVLATDKLGRLGMSIDGCRQRDQIVFDLCKQHQLPIAV 271
Query: 395 LTSGGYLKQTARII 408
GGY + A I+
Sbjct: 272 SMGGGYSPKIADIV 285
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++ AL G S+NI GG HHA +G GFC DI++ L + + +++DL
Sbjct: 97 GTIDCALYALELGVSLNIAGGTHHAFTDRGEGFCLLNDIAIAAHYLLDKQLATKVLVIDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|338530821|ref|YP_004664155.1| histone deacetylase family protein [Myxococcus fulvus HW-1]
gi|337256917|gb|AEI63077.1| histone deacetylase family protein [Myxococcus fulvus HW-1]
Length = 586
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 132/271 (48%), Gaps = 12/271 (4%)
Query: 151 YLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQ 210
YL+EA+ + ++ PQ VS +L H YL+SL +A I P VP
Sbjct: 49 YLLEARALRAQDVHHPQPVSLAELTRVHDAAYLESLGQPETLARIFATDP-ADVP----V 103
Query: 211 KCYLRPMRYHVGGTLEAGFLAL-RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF 269
L +R GGTL A LA+ R+G +N+ GGFHHA+ +GGGFCA DI++ + L
Sbjct: 104 DALLSNLRRVCGGTLGAARLAVARKGPVVNMAGGFHHAAPARGGGFCAVNDIAVALAALH 163
Query: 270 QSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCRIELAPY-TEDQ 328
A+++DLDAH +G + + R ++ A P T+D+
Sbjct: 164 ADGFDGQAVVLDLDAHPPDGTAECLAGQKRAWLGSLSGCDWGALAPEMDETCVPEGTDDR 223
Query: 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER 388
YL ++A LER R PD+ AG+DVL D G + +S G RRD + R
Sbjct: 224 TYLALLDALLERMPR---PDVAFVIAGSDVLAGDRFGRVGLSLDGARRRDRALARALRG- 279
Query: 389 RVPIVMLTSGGYLKQTARIIADSILNLADLG 419
+P V L GGY + ++ A ++L LA G
Sbjct: 280 -LPSVWLPGGGYHRDAWKVFAGTVLVLAGQG 309
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 4 GTLEAGFLAL-RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 62
GTL A LA+ R+G +N+ GGFHHA+ +GGGFCA DI++ + L A+++D
Sbjct: 116 GTLGAARLAVARKGPVVNMAGGFHHAAPARGGGFCAVNDIAVALAALHADGFDGQAVVLD 175
Query: 63 LDAH 66
LDAH
Sbjct: 176 LDAH 179
>gi|87120621|ref|ZP_01076515.1| Histone deacetylase superfamily protein [Marinomonas sp. MED121]
gi|86164264|gb|EAQ65535.1| Histone deacetylase superfamily protein [Marinomonas sp. MED121]
Length = 282
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 131/264 (49%), Gaps = 19/264 (7%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVP--NYF 208
L A +T +N+ P +S L+ AH +Y+++ ++ + A+ E+ +P ++
Sbjct: 11 LRRAGVLTDNNLFSPSPMSLTTLMRAHDPEYVQNFVRGRMSDKAMREI----GLPWSDWL 66
Query: 209 VQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLL 268
V+ R +R V GTL LAL G ++++ GG HHA + G GFC + D ++ L
Sbjct: 67 VE----RTLRA-VSGTLLTADLALEYGIAVHLAGGTHHAHKDYGTGFCIFNDQAVAAIHL 121
Query: 269 FQSKSISTAMIVDLDAHQGNGYEK-----DFMNETRIFIMETCITSKAKEAIRCRIELAP 323
+S +++D D HQG+G D + E K+A I++
Sbjct: 122 IESGKAKKVLVLDCDVHQGDGTAAMCASYDVIETVSWHCEEN--YPAVKQAAGINIQIPK 179
Query: 324 YTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFM 383
+ YL ++A + R L PD I Y+AG DV +D LG L ++ +GI +RD+ V
Sbjct: 180 GAGNAEYLAILKADIPRLLDKINPDFIFYDAGVDVHKDDRLGFLNLTDEGICQRDQYVIN 239
Query: 384 KARERRVPIVMLTSGGYLKQTARI 407
+ R+R +P+ + GGY K A++
Sbjct: 240 ECRKRNLPLACVIGGGYDKDQAKV 263
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL LAL G ++++ GG HHA + G GFC + D ++ L +S +++D
Sbjct: 76 GTLLTADLALEYGIAVHLAGGTHHAHKDYGTGFCIFNDQAVAAIHLIESGKAKKVLVLDC 135
Query: 64 DAHQ 67
D HQ
Sbjct: 136 DVHQ 139
>gi|297184109|gb|ADI20228.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
Length = 300
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 115/256 (44%), Gaps = 13/256 (5%)
Query: 158 ITQDNIIEPQEVSEEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRP 216
+TQ+N P SE Q+L H Y +SL S + A ++ F L
Sbjct: 38 LTQENFFAPDLASETQVLRTHCPYYFQSLLDGSIDGKAQRKIG--------FPWSAQLIE 89
Query: 217 MRYHVG-GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS 275
+G GT++ A+ G S+NI GG HHA +G GFC DI L +S
Sbjct: 90 RERTIGQGTIDNTSFAIENGCSLNIAGGTHHAFYDRGEGFCMLNDIMLAAHYALDYSGVS 149
Query: 276 TAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLE 332
++VDLD HQGNG +++RIF KE+ + L Y ED+ YL
Sbjct: 150 RILVVDLDVHQGNGTAAMAADDSRIFTFSMHGEKNYPYHKESSDLDLPLPDYIEDKAYLS 209
Query: 333 KIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPI 392
+ L+ P+++ + +G DVL +D LG + ++ G RD V + +P+
Sbjct: 210 LLNETLDELFEKVHPELVFFQSGVDVLESDKLGRMGLTLNGCKDRDIAVISRCHRNAIPL 269
Query: 393 VMLTSGGYLKQTARII 408
V+ GGY + II
Sbjct: 270 VINMGGGYSPEIKTII 285
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++ A+ G S+NI GG HHA +G GFC DI L +S ++VDL
Sbjct: 97 GTIDNTSFAIENGCSLNIAGGTHHAFYDRGEGFCMLNDIMLAAHYALDYSGVSRILVVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|23006878|ref|ZP_00048995.1| COG0123: Deacetylases, including yeast histone deacetylase and
acetoin utilization protein [Magnetospirillum
magnetotacticum MS-1]
Length = 275
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 120/252 (47%), Gaps = 9/252 (3%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQK 211
++ A+ + D + P+ L AH Y++++ +F V E + +P V +
Sbjct: 27 ILRARGLAPDGFVTPEPAGAALLSGAHEAAYVEAV-LAFQVPRAVERA--IGLP---VTE 80
Query: 212 CYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS 271
R GGTL A LAL G + + GG HHA G GFC + D+++ L +
Sbjct: 81 AVAARSRASAGGTLCAARLALEHGLAGSTAGGSHHARRAGGAGFCVFNDVAVAALALRRE 140
Query: 272 KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET-CITSKAKEAIRCRIE--LAPYTEDQ 328
I+ A+++DLD HQG+G E +F + C + + + ++ L D
Sbjct: 141 GRIARALVIDLDVHQGDGTADCLAREPDLFTLSIHCERNYPYDKVPGDLDIGLPDGLGDA 200
Query: 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER 388
YL +EA L ++ F PD+I YNAG D +D LG L +S G+ RD V AR R
Sbjct: 201 DYLAVLEAHLPALVQGFDPDLIFYNAGVDSHRDDRLGRLRLSDAGLRARDRYVVGLARRR 260
Query: 389 RVPIVMLTSGGY 400
+P+ + GGY
Sbjct: 261 NIPLCTVIGGGY 272
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL A LAL G + + GG HHA G GFC + D+++ L + I+ A+++DL
Sbjct: 92 GTLCAARLALEHGLAGSTAGGSHHARRAGGAGFCVFNDVAVAALALRREGRIARALVIDL 151
Query: 64 DAHQ 67
D HQ
Sbjct: 152 DVHQ 155
>gi|104779963|ref|YP_606461.1| histone deacetylase family hydrolase [Pseudomonas entomophila L48]
gi|95108950|emb|CAK13646.1| putative hydrolase; histone deacetylase family protein [Pseudomonas
entomophila L48]
Length = 304
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 141/298 (47%), Gaps = 22/298 (7%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F P D + F L H LV++ T ++ P+
Sbjct: 2 PLPLIYHDDYSPEF-------PPDHRFPMDKFRLLRDH----LVDSGLTTDQALLRPEIC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
+ L +AH Y++ N E + +P + + R +R VGG+L
Sbjct: 51 PNDILALAHDRDYIERY---MNGELSREDQRRLGLP--WSEALARRTVRA-VGGSLLTAE 104
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL+ G + ++ GG HHA GFC + D++++ + L ++ + +I D D HQG+G
Sbjct: 105 LALQHGVACHLAGGTHHAHYDHPAGFCIFNDLAVISRYLLEAGRVHRVLIFDCDVHQGDG 164
Query: 290 YEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSF 345
+ + +T I + + A + + I L D YL+ ++ L L +
Sbjct: 165 TAR-ILQDTPEAITVSLHCEQNFPARKAQSDWDIPLPRGMHDGAYLKVVDDALNYLLPLY 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD+++Y+AG DV +D LG L ++ +G+ RDELV + R +P+V + GGY K
Sbjct: 224 QPDLVLYDAGVDVHKDDALGYLHLTDEGLAARDELVLRQCLGRDIPVVGVIGGGYSKD 281
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L LAL+ G + ++ GG HHA GFC + D++++ + L ++ + +I D
Sbjct: 98 GSLLTAELALQHGVACHLAGGTHHAHYDHPAGFCIFNDLAVISRYLLEAGRVHRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|337270974|ref|YP_004615029.1| Histone deacetylase [Mesorhizobium opportunistum WSM2075]
gi|336031284|gb|AEH90935.1| Histone deacetylase [Mesorhizobium opportunistum WSM2075]
Length = 298
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 125/296 (42%), Gaps = 26/296 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P IV+ P+Y+ F H F K+ + L + N EP
Sbjct: 2 PLQIVHHPDYDAGF---AVNHRFPMSKYPLLMEALRARGLAGAL--------NTAEPASA 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
S L +AH Y+ + F I P R + GGT+ A
Sbjct: 51 S--WLKLAHAADYVDQVIGCFVPEKIEREIGFPIGPRVS------RRAQLATGGTILAAR 102
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LALR G + N GG HHA +G GFC + D+++ +L + +++DLD HQG+G
Sbjct: 103 LALRHGIACNTAGGSHHARRAQGAGFCTFNDVAVAALMLLAEGAAHNILVIDLDVHQGDG 162
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLER--SLRS 344
+E R F K A + L T D YLE++ A L ++R
Sbjct: 163 TADILGDEPRAFTFSMHGDRNYPVRKIASDLDVALPDGTGDAAYLERLAAILPELSAMRH 222
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
+ DI+ YNAG DV D LG LA+S G+ RDE+V R +P+ + GGY
Sbjct: 223 W--DIVFYNAGVDVHAQDRLGRLALSDNGLRSRDEMVIGHFRANGIPVCGVVGGGY 276
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LALR G + N GG HHA +G GFC + D+++ +L + +++DL
Sbjct: 96 GTILAARLALRHGIACNTAGGSHHARRAQGAGFCTFNDVAVAALMLLAEGAAHNILVIDL 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|402495659|ref|ZP_10842382.1| histone deacetylase [Aquimarina agarilytica ZC1]
Length = 300
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 134/299 (44%), Gaps = 20/299 (6%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
I + P Y L+K H F +K+ + L K L+ T DN EP+ V+E
Sbjct: 4 IAFHPCYE---HPLKKGHRFPMEKY----DLLPKQ----LLHEGTCTVDNFFEPKIVAET 52
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
+L HTE+Y FN+ A++ V + + + + G+++A A+
Sbjct: 53 DVLRVHTEEYF------FNLRALNLPKSEVRAIGFPLSETLVNRELIITQGSIDACKYAI 106
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
G ++NI GG HHA +G FC D ++ L K +IVDLD HQGNG +
Sbjct: 107 TNGIAMNIAGGTHHAFSNRGEAFCLLNDQAVAAAYLLHHKLAKKILIVDLDVHQGNGTAE 166
Query: 293 DFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDI 349
F + +++F KE I L T+DQ YL ++ L + + PD
Sbjct: 167 IFKHNSKVFTFSMHGEKNYPFRKEISDLDIALPNGTDDQSYLSVLKRTLPKLFKQEQPDF 226
Query: 350 IVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
+ Y +G D+L++D LG L+ S G + RD V +P++ GGY II
Sbjct: 227 VFYLSGVDILVSDKLGKLSCSLAGCMERDRYVLEFFYANSIPVMCSMGGGYSPDIKTII 285
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+++A A+ G ++NI GG HHA +G FC D ++ L K +IVDL
Sbjct: 97 GSIDACKYAITNGIAMNIAGGTHHAFSNRGEAFCLLNDQAVAAAYLLHHKLAKKILIVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|94310146|ref|YP_583356.1| histone deacetylase superfamily [Cupriavidus metallidurans CH34]
gi|93353998|gb|ABF08087.1| histone deacetylase superfamily [Cupriavidus metallidurans CH34]
Length = 323
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 97/195 (49%), Gaps = 3/195 (1%)
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
R G T+ A +AL +G + N+ GG HHA KG GFC + D ++ + L + S+
Sbjct: 105 RRSAGATIAACRVALEQGIAANLAGGTHHAYADKGAGFCVFNDAAIAARRLQRDGSVRRV 164
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
++DLD HQGNG ++ IF + KEA + L +D Y +
Sbjct: 165 AVIDLDVHQGNGTASILRDDPTIFTLSLHGEKNYPFRKEASDLDVGLPDGCDDGTYAVAL 224
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
+ LE F PD+++Y AG D D LG L ++ G+ +RD +VF AR R +P+ +
Sbjct: 225 ASALETLFARFDPDLLIYLAGADPHEGDRLGRLKLTMAGLAQRDSMVFEAARSRGLPVAV 284
Query: 395 LTSGGYLKQTARIIA 409
+GGY Q +A
Sbjct: 285 AMAGGYGNQIEDTVA 299
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
T+ A +AL +G + N+ GG HHA KG GFC + D ++ + L + S+ ++DLD
Sbjct: 111 TIAACRVALEQGIAANLAGGTHHAYADKGAGFCVFNDAAIAARRLQRDGSVRRVAVIDLD 170
Query: 65 AHQ 67
HQ
Sbjct: 171 VHQ 173
>gi|410621570|ref|ZP_11332416.1| histone deacetylase family protein [Glaciecola pallidula DSM 14239
= ACAM 615]
gi|410158808|dbj|GAC27790.1| histone deacetylase family protein [Glaciecola pallidula DSM 14239
= ACAM 615]
Length = 298
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 7/192 (3%)
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 281
GT+ LAL G ++N+ GG+HHA G GFC D+ L + QSK+I ++ D
Sbjct: 96 AGTVLTSSLALEHGKALNLTGGYHHAFANFGSGFCMVNDLYLAALNMLQSKNIDKVLVFD 155
Query: 282 LDAHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCRIE-----LAPYTEDQHYLEKIEA 336
D HQG+G K N ++ + I + R +I LA T D +L +E
Sbjct: 156 CDVHQGDGTAKLAANNNAVYTVS--IHGEKNFPHRKQISDLDFGLAKGTGDDEFLATVEQ 213
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
+ ++ F PD ++Y+AG DV ++D LG L I+ +G++ RD+ VF + + +PI +
Sbjct: 214 AWQMAITYFQPDAVIYDAGVDVHIDDDLGHLNITTEGVLARDQFVFAQCEKLGLPIAAVI 273
Query: 397 SGGYLKQTARII 408
GGY + ++
Sbjct: 274 GGGYQRDIDALV 285
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G ++N+ GG+HHA G GFC D+ L + QSK+I ++ D
Sbjct: 97 GTVLTSSLALEHGKALNLTGGYHHAFANFGSGFCMVNDLYLAALNMLQSKNIDKVLVFDC 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|357027929|ref|ZP_09089984.1| Deacetylase [Mesorhizobium amorphae CCNWGS0123]
gi|355540174|gb|EHH09395.1| Deacetylase [Mesorhizobium amorphae CCNWGS0123]
Length = 300
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 98/193 (50%), Gaps = 5/193 (2%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
GGT++A LAL+ G + N GG HHA +G GFC + D+++ +L ++ ++V
Sbjct: 96 TGGTVQAARLALQHGIACNAAGGSHHARRAQGAGFCTFNDVAVASLVLLAEGAVQNILVV 155
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAG 337
DLD HQG+G +E R F K A I L T D YLE++
Sbjct: 156 DLDVHQGDGTADILKDEPRAFTFSMHGDRNYPVRKIASSLDIALPDGTGDTAYLERLAGI 215
Query: 338 L-ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
L E S R+ DI+ YNAG DV D LG LA+S G+ RDE+V R +P+ +
Sbjct: 216 LPELSARARW-DIVFYNAGVDVHAEDRLGRLALSDNGLRARDEMVIGHFRALGIPLCGVI 274
Query: 397 SGGYLKQTARIIA 409
GGY AR+ A
Sbjct: 275 GGGYSTDVARLAA 287
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++A LAL+ G + N GG HHA +G GFC + D+++ +L ++ ++VDL
Sbjct: 98 GTVQAARLALQHGIACNAAGGSHHARRAQGAGFCTFNDVAVASLVLLAEGAVQNILVVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|443468645|ref|ZP_21058852.1| Deacetylase [Pseudomonas pseudoalcaligenes KF707]
gi|442897864|gb|ELS24681.1| Deacetylase [Pseudomonas pseudoalcaligenes KF707]
Length = 305
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 140/306 (45%), Gaps = 34/306 (11%)
Query: 112 PIVYRPEYNV-----HFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEP 166
P+VY +Y+ H F +EK F L++H L+++ T + P
Sbjct: 4 PLVYHDDYSPPFPAEHRFPMEK------------FRLLYRH----LLDSGLTTDARLHRP 47
Query: 167 QEVSEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGGTL 225
E L +AH Y++ F +S E + +P + R +R VGG+L
Sbjct: 48 DICPPEVLALAHCPDYIRR----FAEGELSREEQRRLGLP--WSPPLARRTVRA-VGGSL 100
Query: 226 EAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAH 285
A LAL G + ++ GG HHA GFC + D++++ + L ++ + +I D D H
Sbjct: 101 RAAELALEHGLACHLAGGTHHAHYDHAAGFCIFNDLAVVSRYLLETGRVQRVLIFDCDVH 160
Query: 286 QGNGYEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERS 341
QG+G + + +T I + K A + I L D YL+ +E L
Sbjct: 161 QGDGTAR-ILADTPDAITVSLHCEKNFPARKAESDWDIPLPMGLGDAEYLQVVEDALNYL 219
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYL 401
L + PD+++Y+AG DV +D LG L ++ G+ RDE V R +P+V L GGY
Sbjct: 220 LPLYQPDLVLYDAGVDVHKDDALGYLQLTDAGVAARDETVMRHCLGRDIPVVGLIGGGYD 279
Query: 402 KQTARI 407
K A +
Sbjct: 280 KDRAAL 285
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A LAL G + ++ GG HHA GFC + D++++ + L ++ + +I D
Sbjct: 98 GSLRAAELALEHGLACHLAGGTHHAHYDHAAGFCIFNDLAVVSRYLLETGRVQRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|17230842|ref|NP_487390.1| histone deacetylase/AcuC/AphA family protein [Nostoc sp. PCC 7120]
gi|17132445|dbj|BAB75049.1| histone deacetylase/AcuC/AphA family protein [Nostoc sp. PCC 7120]
Length = 305
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 138/301 (45%), Gaps = 22/301 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PI+Y P+Y L + H F K+K ++ L + +F T + P E+ E
Sbjct: 4 PIIYHPDY---VAPLPEGHRFPMAKFKKLYELLLSD--DVAQTEQFYTP--TLPPLELIE 56
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+ HT Y++S + + + A + L P + C VGGT+ L
Sbjct: 57 ----LVHTPDYVRSYCEGTLDTKAQRRIG-LPWSPALANRTCIA------VGGTILTAQL 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL +G + N GG HHA + G GFC + D+++ ++L Q + + +IVDLD HQG+G
Sbjct: 106 ALSQGLACNTAGGTHHAFPSYGSGFCIFNDLAIASRVLQQQQIVQKILIVDLDVHQGDGT 165
Query: 291 EKDFMNETRIFI--METCIT-SKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
F ++ +F M I K+ + L ED YL+ + + L L P
Sbjct: 166 AFIFQDDDSVFTFSMHCEINFPGTKQHSDLDVPLPVGMEDDAYLQTLASYLPDLLSEIKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D+++Y+AG D + D LG LA++ G+ RR+ V P+ + GGY +
Sbjct: 226 DLVLYDAGVDPHIGDRLGKLALTDTGLFRREMQVLTTCVSAGYPVACVIGGGYADDMTSL 285
Query: 408 I 408
+
Sbjct: 286 V 286
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL +G + N GG HHA + G GFC + D+++ ++L Q + + +IVDL
Sbjct: 98 GTILTAQLALSQGLACNTAGGTHHAFPSYGSGFCIFNDLAIASRVLQQQQIVQKILIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|351732315|ref|ZP_08950006.1| histone deacetylase [Acidovorax radicis N35]
Length = 314
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 139/311 (44%), Gaps = 38/311 (12%)
Query: 119 YNVHF-FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIA 177
Y HF L + H F K++ + + + +H+ ++ S+ +L +A
Sbjct: 5 YADHFVLPLPEGHRFPMAKYRLLRDRIAQHLPGVSLQVAL----------PASDRELALA 54
Query: 178 HTEKYLKSLKWSFNVAAISEVCPLVAVPNYFV-QKCYLRPMRYHVGGTLEAGFLALRRGW 236
H Y+ ++ A + PL F + R VG T+ A +ALR G
Sbjct: 55 HAPDYIDAI-------ADGTLPPLAQREIGFPWSEAMAERARRSVGATVAASRVALREGV 107
Query: 237 SINIGGGFHHASETKGGGFCAYADISLLVKLL-----------FQSKSISTAMIVDLDAH 285
+ N+ GG HHA KG GFC + D+++ +L+ ++ + A ++DLD H
Sbjct: 108 AGNLAGGTHHAYADKGSGFCVFNDVAVAARLMQVEWARGGGDGRAARPLQVA-VIDLDVH 166
Query: 286 QGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSL 342
QGNG F + +F + KE +EL D YL+ +E L+
Sbjct: 167 QGNGTAHIFRGDHSVFTLSLHGARNFPFRKEPSDLDVELPDGCSDPDYLQALEHALDALE 226
Query: 343 RSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402
+ F P ++ Y AG D D LG LA++ G+ RD VF A +RR+P+V +GGY
Sbjct: 227 QRFAPQLVFYLAGADPHEGDRLGRLAVTHDGLEARDRRVFDWAWQRRIPLVFAMAGGY-- 284
Query: 403 QTARIIADSIL 413
R + D++L
Sbjct: 285 --GRNLDDTVL 293
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 19/112 (16%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLL-----------FQSK 53
T+ A +ALR G + N+ GG HHA KG GFC + D+++ +L+ ++
Sbjct: 95 TVAASRVALREGVAGNLAGGTHHAYADKGSGFCVFNDVAVAARLMQVEWARGGGDGRAAR 154
Query: 54 SISTAMIVDLDAHQFSD--YYFPSAHSI-----KRKRKVEFLKERKALEDEI 98
+ A ++DLD HQ + + F HS+ R F KE L+ E+
Sbjct: 155 PLQVA-VIDLDVHQGNGTAHIFRGDHSVFTLSLHGARNFPFRKEPSDLDVEL 205
>gi|384252722|gb|EIE26198.1| histone deacetylase [Coccomyxa subellipsoidea C-169]
Length = 332
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 91/183 (49%), Gaps = 3/183 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
V GTL LALR G + N GG HHA G GFC D+++ +L + + +I+
Sbjct: 115 VAGTLLTARLALRHGLACNTAGGTHHAFPDSGSGFCILNDLAVTAAVLLEEARVERVLIL 174
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAG 337
DLD HQG+G F +E R+F M S K+ + L T D YL +
Sbjct: 175 DLDVHQGDGTALMFQDEPRVFTMSVHGESNFPARKQRSDLDVPLPDGTADDEYLRVLGEM 234
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L L F PD+++Y+AG D +D LG LA++ QG++RR+ V +P+
Sbjct: 235 LPPVLSCFQPDLVLYDAGVDPHKDDSLGKLALTDQGLLRRELQVLDTCLAADIPVAGYVG 294
Query: 398 GGY 400
GGY
Sbjct: 295 GGY 297
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL LALR G + N GG HHA G GFC D+++ +L + + +I+DL
Sbjct: 117 GTLLTARLALRHGLACNTAGGTHHAFPDSGSGFCILNDLAVTAAVLLEEARVERVLILDL 176
Query: 64 DAHQ 67
D HQ
Sbjct: 177 DVHQ 180
>gi|334132984|ref|ZP_08506739.1| hypothetical protein METUNv1_03832 [Methyloversatilis universalis
FAM5]
gi|333441894|gb|EGK69866.1| hypothetical protein METUNv1_03832 [Methyloversatilis universalis
FAM5]
Length = 300
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 133/311 (42%), Gaps = 22/311 (7%)
Query: 119 YNVHF-FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIA 177
Y HF L + H F K++ + + + + ++ EP ++ +L A
Sbjct: 5 YADHFVLPLPETHRFPMAKYRQLRERVAAELPDV----------DLREPAAATDAELCRA 54
Query: 178 HTEKYL-KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGW 236
H Y+ ++ + +V I + + + R G T+ A ALR G
Sbjct: 55 HDAGYVDRASRGELSVNEIRTI-------GFPWSPEMIERSRRSAGATMSACRSALREGV 107
Query: 237 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMN 296
S+N+ GG HHA G G+C + D ++ +L I+ IVDLD HQG+G +
Sbjct: 108 SVNLAGGTHHAKHASGAGYCVFNDAAVATCMLQAECGIARVAIVDLDVHQGDGTADILGD 167
Query: 297 ETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYN 353
+F + KE + L T DQ YL ++ L R F P ++Y
Sbjct: 168 ADDVFTLSLHGDRNFPFRKEVSHLDVALPDGTGDQAYLAALDQALATMSRRFEPQFVIYL 227
Query: 354 AGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSIL 413
AG D D LG L ++ G+ RD VF R+R +P+ + +GGY ++ I+A
Sbjct: 228 AGADPFEGDRLGRLKLTRAGLAARDARVFDFCRQRGLPLAITMAGGYAERIEDIVAIHFA 287
Query: 414 NLADLGLISRP 424
++ + RP
Sbjct: 288 TISAARALHRP 298
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
T+ A ALR G S+N+ GG HHA G G+C + D ++ +L I+ IVDLD
Sbjct: 95 TMSACRSALREGVSVNLAGGTHHAKHASGAGYCVFNDAAVATCMLQAECGIARVAIVDLD 154
Query: 65 AHQ 67
HQ
Sbjct: 155 VHQ 157
>gi|418292802|ref|ZP_12904732.1| histone deacetylase family protein [Pseudomonas stutzeri ATCC 14405
= CCUG 16156]
gi|379064215|gb|EHY76958.1| histone deacetylase family protein [Pseudomonas stutzeri ATCC 14405
= CCUG 16156]
Length = 306
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 142/304 (46%), Gaps = 34/304 (11%)
Query: 112 PIVYRPEYNV-----HFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEP 166
P+VY +Y+ H F +EK ++ + ++LV T + ++ P
Sbjct: 4 PLVYHDDYSPPLPPGHRFPMEK----------------FRLLRDHLVALGLTTDEALLRP 47
Query: 167 QEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLE 226
+ S++ L +AH Y+ ++ + E+ L +P + + R +R VGG+L
Sbjct: 48 ELCSQDILALAHAPDYVT--RYCSGEMSRDELRRL-GLP--WSPELAQRTVRA-VGGSLL 101
Query: 227 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 286
A AL+ G + ++ GG HHA GFC + D++++ L +S + +I D D HQ
Sbjct: 102 AAEQALQHGLACHLAGGTHHAHHDHASGFCIFNDLAVIALYLLESGRVGRVLIFDCDVHQ 161
Query: 287 GNGYEKDFMN-----ETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERS 341
G+G + N + + T KA I L P D+ YL+ + L
Sbjct: 162 GDGTARILENVADAVTVSLHCEKNFPTRKAHS--DWDIPLPPGMGDEAYLKVVHDTLNYL 219
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYL 401
L + PD+++Y+AG DV +D LGLL+++ G+ RD V R +P+V L GGY
Sbjct: 220 LPIYQPDLVLYDAGVDVHRDDALGLLSLTDAGLAARDSAVLDHCLGRDIPVVGLIGGGYD 279
Query: 402 KQTA 405
K A
Sbjct: 280 KDRA 283
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL+ G + ++ GG HHA GFC + D++++ L +S + +I D
Sbjct: 98 GSLLAAEQALQHGLACHLAGGTHHAHHDHASGFCIFNDLAVIALYLLESGRVGRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|167648847|ref|YP_001686510.1| histone deacetylase superfamily protein [Caulobacter sp. K31]
gi|167351277|gb|ABZ74012.1| histone deacetylase superfamily [Caulobacter sp. K31]
Length = 305
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 135/300 (45%), Gaps = 22/300 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQD-NIIEPQEVS 170
PIV+ P + ++ H F K+ + L EA+ + + P+ +
Sbjct: 7 PIVHHPAFRA---EMPVGHRFPMDKFSRLAAVL---------EAEGVAGPAGFVRPEPID 54
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
E+ L + H E Y++ + ++ E + +PN R GGTL A L
Sbjct: 55 EDSLRLVHDEAYVRGV---IDLTLPPEFVRRIGMPN---TDSVAARARAATGGTLAAARL 108
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G + N GG HHA G GFC + D+++ + L + ++VDLD HQG+G
Sbjct: 109 ALEHGVACNTAGGSHHAQADTGAGFCVFNDVAVAARRLLAEGKVGQVLVVDLDVHQGDGT 168
Query: 291 EKDFMNETRIFI--METCITSKAKEAIR-CRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ F + +F M A++A + L T D+ YL K+ L L P
Sbjct: 169 ARIFEGDASVFTFSMHAEKNFPARKATSDLDVNLPDGTGDEAYLGKLGELLPELLARVAP 228
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D++ +NAG D +D LG L++S +G+ RR+ V ER +P+ + GGY R+
Sbjct: 229 DLVFFNAGVDPHADDKLGRLSLSDEGLARREAFVLGSCLERGIPVTGVIGGGYDADIDRL 288
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 11 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
LAL G + N GG HHA G GFC + D+++ + L + ++VDLD HQ
Sbjct: 108 LALEHGVACNTAGGSHHAQADTGAGFCVFNDVAVAARRLLAEGKVGQVLVVDLDVHQ 164
>gi|359683254|ref|ZP_09253255.1| deacetylase [Leptospira santarosai str. 2000030832]
Length = 292
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 137/301 (45%), Gaps = 37/301 (12%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDN------IIEP 166
+VY P+YN+ H F ++K++ I++ + QD+ + P
Sbjct: 1 MVYHPDYNIDL----GPHIFPARKYQMIYD--------------LVKQDHKLANLYVYRP 42
Query: 167 QEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLE 226
+ +++ L + HTE++L F I+E +P + K ++ VGGT+
Sbjct: 43 EPATDKDLALVHTEEFLND----FFSLKITERTQSSELP---LTKQIVQSFVLAVGGTIL 95
Query: 227 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 286
A L + + +IGGGFHH+ + GFC D ++ VKL ++ + +DLD HQ
Sbjct: 96 ATELTEKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIAVKLYQRAYPGRKILFIDLDLHQ 155
Query: 287 GNGYEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSL 342
GNG F + +F E K K + +E T D YLE + L +
Sbjct: 156 GNGNSVVFQEDPDVFTFSMHQENLYPKKEKSGLDIPLEEG--TNDGKYLELLVESLRKIE 213
Query: 343 RSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402
F PD+I Y AG D D LG L ++ QG+ +RD++V V V+L +GGY K
Sbjct: 214 SDFKPDLIFYIAGADPFEGDSLGDLKLTFQGLRKRDKIVRDFVSALDVSAVILPAGGYAK 273
Query: 403 Q 403
Sbjct: 274 D 274
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A L + + +IGGGFHH+ + GFC D ++ VKL ++ + +DL
Sbjct: 92 GTILATELTEKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIAVKLYQRAYPGRKILFIDL 151
Query: 64 DAHQ 67
D HQ
Sbjct: 152 DLHQ 155
>gi|429748657|ref|ZP_19281828.1| histone deacetylase family protein [Capnocytophaga sp. oral taxon
332 str. F0381]
gi|429170214|gb|EKY11918.1| histone deacetylase family protein [Capnocytophaga sp. oral taxon
332 str. F0381]
Length = 296
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 115/249 (46%), Gaps = 14/249 (5%)
Query: 166 PQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYL--RPMRYHVGG 223
PQ+ S + L + H Y+ ++ A+P FVQ L R + V G
Sbjct: 45 PQKASPQSLCLVHHPDYVHRFIHL-------QLTHKEALPIGFVQNEQLVERELTL-VQG 96
Query: 224 TLEAGFLALR-RGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
T++ AL+ R + NI GG HHA +G GFC D ++ L ++ +I+DL
Sbjct: 97 TIDGALWALQHRQVAFNIAGGTHHAFSDRGEGFCMLNDQAVAAGYLLAHTAVQRILIIDL 156
Query: 283 DAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLE 339
D HQGNG + F N+ R+F KE I L T D+ YL ++ L
Sbjct: 157 DVHQGNGTAQIFANDPRVFTFSMHAQHNYPFQKEQSSLDIPLPNGTTDEVYLRILQDTLP 216
Query: 340 RSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGG 399
+ + P + Y +G DVL D LG L++S +G RD+ VF + + ++P+ GG
Sbjct: 217 QLIAQHQPQFVFYQSGVDVLATDKLGKLSLSVEGCAERDKFVFQQCKAHQLPVQCAMGGG 276
Query: 400 YLKQTARII 408
Y Q I+
Sbjct: 277 YSPQLRHIL 285
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 4 GTLEAGFLALR-RGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 62
GT++ AL+ R + NI GG HHA +G GFC D ++ L ++ +I+D
Sbjct: 96 GTIDGALWALQHRQVAFNIAGGTHHAFSDRGEGFCMLNDQAVAAGYLLAHTAVQRILIID 155
Query: 63 LDAHQ-------FSDYYFPSAHSIKRKRKVEFLKERKALEDEITSEPQESVVTR 109
LD HQ F++ S+ + F KE+ +L+ + + + V R
Sbjct: 156 LDVHQGNGTAQIFANDPRVFTFSMHAQHNYPFQKEQSSLDIPLPNGTTDEVYLR 209
>gi|75909399|ref|YP_323695.1| histone deacetylase superfamily protein [Anabaena variabilis ATCC
29413]
gi|75703124|gb|ABA22800.1| Histone deacetylase superfamily [Anabaena variabilis ATCC 29413]
Length = 305
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 132/301 (43%), Gaps = 22/301 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PI+Y P Y L + H F K+K ++ L + + P
Sbjct: 4 PIIYHPHYVA---PLPEGHRFPMAKFKKLYELL--------LSDDVAQTEQFYTPILPHP 52
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
E + + HT Y++S + + + A + L P + C VGGT+ L
Sbjct: 53 ELIELVHTPDYVRSYCEGTLDTKAQRRIG-LPWSPALANRTCIA------VGGTILTAQL 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL +G + N GG HHA + G GFC + DI++ ++L Q + + +IVDLD HQG+G
Sbjct: 106 ALNQGLACNTAGGTHHAFPSYGSGFCIFNDIAIASRVLQQQQLVKKILIVDLDVHQGDGT 165
Query: 291 EKDFMNETRIFIMET-CITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
F ++ +F C + K+ + L ED YL+ + + L L P
Sbjct: 166 AFIFQDDDSVFTFSMHCEVNFPGTKQHSDLDVPLPVGMEDDAYLQTLASYLPDLLSEIKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D++ Y+AG D + D LG LA+S G+ RR+ V P+ + GGY +
Sbjct: 226 DLVFYDAGVDPHIGDRLGKLALSDTGLFRREMQVLTTCISAGYPVACVIGGGYADDMTSL 285
Query: 408 I 408
+
Sbjct: 286 V 286
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL +G + N GG HHA + G GFC + DI++ ++L Q + + +IVDL
Sbjct: 98 GTILTAQLALNQGLACNTAGGTHHAFPSYGSGFCIFNDIAIASRVLQQQQLVKKILIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|119471110|ref|ZP_01613642.1| histone deacetylase family protein [Alteromonadales bacterium TW-7]
gi|119445766|gb|EAW27048.1| histone deacetylase family protein [Alteromonadales bacterium TW-7]
Length = 299
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 124/258 (48%), Gaps = 20/258 (7%)
Query: 165 EPQEVSEEQLLIAHTEKYLKS-LKWSFNVAAISEVC-PLVAVPNYFVQKCYLRPMRYHVG 222
+P + QL + H+E Y+ + L + + AI ++ P A V++ L VG
Sbjct: 44 QPAKARPSQLALCHSEHYINNFLTGNLSDKAIKKMGFPYSA---QLVERTLLS-----VG 95
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
G+++A AL+ G + N+ GG+HHA G GFC + D+++ L + T +I D
Sbjct: 96 GSIQAAEEALKSGLTCNLSGGYHHAYSDYGSGFCIFNDLAIAATHLLSTHKAKTVLIFDC 155
Query: 283 DAHQGNGYEKDFMNETRIFIMETCITS-----KAKEAIRCRIELAPYTEDQHYLEKIEAG 337
D HQG+G + ++ I+ I + K+ L + D Y++ ++
Sbjct: 156 DVHQGDGTAQIINQQSHKNIITCSIHCEQNFPRLKQQSDYDFSLLAKSGDDEYIDTLQHA 215
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L + PDII+YNAG D+ D LGLL +S G+ RD V ++ +P++
Sbjct: 216 LALCVSIHQPDIILYNAGADIYTKDELGLLNVSITGVYERDLFVLDFCKQHNIPLMCGLG 275
Query: 398 GGYLKQTARIIADSILNL 415
GGY + DS++N+
Sbjct: 276 GGYQRNL-----DSLINV 288
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+++A AL+ G + N+ GG+HHA G GFC + D+++ L + T +I D
Sbjct: 96 GSIQAAEEALKSGLTCNLSGGYHHAYSDYGSGFCIFNDLAIAATHLLSTHKAKTVLIFDC 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|393770657|ref|ZP_10359135.1| histone deacetylase [Novosphingobium sp. Rr 2-17]
gi|392723764|gb|EIZ81151.1| histone deacetylase [Novosphingobium sp. Rr 2-17]
Length = 303
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 133/293 (45%), Gaps = 26/293 (8%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
+V+ P Y V + +++ F K+ + L V A P+ + E
Sbjct: 4 VVHHPGYVV---ETDRMGTFPHDKYALVMRVLGGSGETMKVHA----------PEVMPRE 50
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
L H Y+ + + +V A + A+ ++ L P GGT A LAL
Sbjct: 51 WLEAVHEPAYVDEV-INCSVPAAKQRRIGFAIDERISRRSQLSP-----GGTWLAAKLAL 104
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
+ G++ N GG HHA G G+C + D++L L +++S +I+DLD HQG+G
Sbjct: 105 QHGYAANSAGGSHHALADSGAGYCVFNDLALTANRLIAERNVSRILILDLDVHQGDGTAA 164
Query: 293 DFMNETRIFIM-----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ IF + + T KA+ ++ + L T D YLE + L L F P
Sbjct: 165 LTAGRSDIFTLSIHAEKNFPTRKARSSL--DVGLPDATGDAGYLEALAGSLPMVLDHFVP 222
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
++I+ AG D +D LG L+++ +G+ RD V +A+ R +P+ GGY
Sbjct: 223 ELILLQAGVDAHTDDKLGRLSLTDEGLAHRDRFVATEAKRRGIPLASTLGGGY 275
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A LAL+ G++ N GG HHA G G+C + D++L L +++S +I+DL
Sbjct: 95 GTWLAAKLALQHGYAANSAGGSHHALADSGAGYCVFNDLALTANRLIAERNVSRILILDL 154
Query: 64 DAHQ 67
D HQ
Sbjct: 155 DVHQ 158
>gi|85712658|ref|ZP_01043704.1| Histone deacetylase/AcuC/AphA family protein [Idiomarina baltica
OS145]
gi|85693508|gb|EAQ31460.1| Histone deacetylase/AcuC/AphA family protein [Idiomarina baltica
OS145]
Length = 302
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 142/334 (42%), Gaps = 54/334 (16%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P +Y P Y+ +L + H + K+K ++ + H D I+P ++
Sbjct: 4 PFIYHPIYSE--LQLPERHRYPIHKYKMLYQWALAH---------GARPDQFIQPTPMNW 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCY-----------LRPMRYH 220
Q+ +AH+ Y+ L + N F +K + L
Sbjct: 53 SQVALAHSSNYINKL-----------------ITNQFDKKEWRKVGFPWSTQLLTRTLTS 95
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
GGT E AL + +I+ GG+HHA G GFC D+++ L ++K +I
Sbjct: 96 AGGTFETVKTALDKRIAIHFSGGYHHAHHDWGSGFCLINDLAMSAVLATKAKPNLKILIF 155
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCRIE------LAPYTEDQHYLEKI 334
D D HQG+G + IF TC + +++ L T D YL+ +
Sbjct: 156 DTDVHQGDGTATLLRDHENIF---TCSIHGERNFPFTKVDSDLDVALPKGTTDGAYLDAV 212
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
+ L + + F PD+I+Y+AG D+ D LG L +S +GI RD V A++ + +
Sbjct: 213 KHTLHKVTKDFKPDLILYDAGVDIYRRDDLGHLDVSIEGIFSRDYFVLDYAKQNNISLAA 272
Query: 395 LTSGGYLKQTARIIADSILNLADLGLISRPYNIW 428
+ GGY + +R+I LA L+ + +W
Sbjct: 273 VIGGGYQRNLSRLI------LAHAQLLRASHQVW 300
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT E AL + +I+ GG+HHA G GFC D+++ L ++K +I D
Sbjct: 98 GTFETVKTALDKRIAIHFSGGYHHAHHDWGSGFCLINDLAMSAVLATKAKPNLKILIFDT 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|340618079|ref|YP_004736532.1| histone deacetylase [Zobellia galactanivorans]
gi|339732876|emb|CAZ96251.1| Deacetylase, histone deacetylase family [Zobellia galactanivorans]
Length = 300
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 115/253 (45%), Gaps = 9/253 (3%)
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
T +N EP+ +++ ++ H +Y L N+ S + P + + + R
Sbjct: 39 TAENFFEPEIPNDKYIVAVHEPEYFYDL---LNLKISSRDARKIGFP---LTEDLIERER 92
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
GT++A A+ G ++NI GG HHA G FC D ++ + L + +
Sbjct: 93 IIADGTIQACRFAIENGIAMNIAGGTHHAYTDHGEAFCMLNDQAIGARYLQAHQLAKKIL 152
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIE 335
IVDLD HQGNG + F N+T +F S KE I LA YT+D YL ++
Sbjct: 153 IVDLDVHQGNGTAEIFGNDTSVFTFSMHGASNYPFKKERSDLDIPLAKYTDDTTYLSLLK 212
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
L R + PD I Y AG D++ +D LG LA+S G RD V ++P+
Sbjct: 213 QTLPRLISEEKPDFIFYLAGVDIIGSDKLGTLALSIDGCKERDAFVLETCHRLQIPVQCS 272
Query: 396 TSGGYLKQTARII 408
GGY I+
Sbjct: 273 MGGGYSPAIKTIV 285
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++A A+ G ++NI GG HHA G FC D ++ + L + +IVDL
Sbjct: 97 GTIQACRFAIENGIAMNIAGGTHHAYTDHGEAFCMLNDQAIGARYLQAHQLAKKILIVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|399069021|ref|ZP_10749252.1| deacetylase, histone deacetylase/acetoin utilization protein
[Caulobacter sp. AP07]
gi|398045378|gb|EJL38108.1| deacetylase, histone deacetylase/acetoin utilization protein
[Caulobacter sp. AP07]
Length = 309
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 139/299 (46%), Gaps = 22/299 (7%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFIT-QDNIIEPQEVSE 171
IV+ P + ++ H F K+ + L EA+ + D I P+ +
Sbjct: 12 IVHHPAFRA---EMPAGHRFPMDKFSRLAAVL---------EAEGVAGPDGFIRPEPIDL 59
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ LL+ H Y++ + ++ ++V + +PN + R GGTL A LA
Sbjct: 60 DSLLLVHDAAYVRGV---VELSLPADVVRRIGMPN---TESVAARARAATGGTLAAARLA 113
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G + N GG HHA G GFC + D+++ + L ++ ++VDLD HQG+G
Sbjct: 114 LEHGIACNTAGGSHHAQADTGAGFCVFNDVAVAARRLQAEGAVRQVLVVDLDVHQGDGTA 173
Query: 292 KDFMNETRIFI--METCITSKAKEAIR-CRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
+ F + +F M A++A+ I+L D+ YL+ + L L PD
Sbjct: 174 RIFEGDPSVFTFSMHAEKNFPARKAVSDLDIDLPDGMGDEAYLKALSGVLPELLARVAPD 233
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
++ +NAG D +D LG L++S +G+ RR+ V ER +P+ + GGY R+
Sbjct: 234 LVFFNAGVDPHADDRLGRLSLSDEGLARREAFVLGSCLEREIPVAGVIGGGYDADIDRL 292
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 11 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
LAL G + N GG HHA G GFC + D+++ + L ++ ++VDLD HQ
Sbjct: 112 LALEHGIACNTAGGSHHAQADTGAGFCVFNDVAVAARRLQAEGAVRQVLVVDLDVHQ 168
>gi|409099281|ref|ZP_11219305.1| histone deacetylase [Pedobacter agri PB92]
Length = 300
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 114/260 (43%), Gaps = 9/260 (3%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQK 211
L+ I Q+N+ P V E+ +L+ H Y + L+ + + + P +
Sbjct: 32 LLHEGTIDQNNLFSPNLVDEDIILLTHDANYWRQLR---ELTLPPKEQRRIGFP--LNAQ 86
Query: 212 CYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS 271
R +R GT++ A++ G + N GG HH+ G GFC D ++ L
Sbjct: 87 LVERELRI-TQGTIDGTGYAIKNGIAFNAAGGTHHSGSNWGEGFCLLNDQAIAANYLINK 145
Query: 272 KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQ 328
+ +IVDLD HQGNG + F NE R+F KE + L + D
Sbjct: 146 NLVDRILIVDLDVHQGNGTAEIFRNEPRVFTFSMHGDKNFPFRKEISDLDVALEDHIGDD 205
Query: 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER 388
YL +E L+++ P+ + Y AG DVL D LG LA++ RD +V + +
Sbjct: 206 EYLSLLEVNLQQAFEKSNPEFVFYLAGVDVLSTDKLGKLALTKAACKERDRMVLQACKSK 265
Query: 389 RVPIVMLTSGGYLKQTARII 408
VP+ + GGY I+
Sbjct: 266 GVPLQISMGGGYSADIKDIV 285
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++ A++ G + N GG HH+ G GFC D ++ L + +IVDL
Sbjct: 97 GTIDGTGYAIKNGIAFNAAGGTHHSGSNWGEGFCLLNDQAIAANYLINKNLVDRILIVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|257094856|ref|YP_003168497.1| histone deacetylase superfamily [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047380|gb|ACV36568.1| histone deacetylase superfamily [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 306
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 118/251 (47%), Gaps = 15/251 (5%)
Query: 166 PQEVSEEQLLIAHTEKYL-KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGT 224
P S EQL AH +Y+ + + + A I + + + + R G T
Sbjct: 48 PMAASTEQLCHAHVAEYVARVCRGDLSAAEIRRI-------GFPWSEGMVERSRRSAGAT 100
Query: 225 LEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDA 284
+ A +AL+ +IN+ GG HHA G GFC + D ++ ++L + +VD D
Sbjct: 101 IAACRIALQETCAINLAGGTHHAHADHGEGFCVFNDAAVAARVLRAEGCVQRLAVVDCDV 160
Query: 285 HQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERS 341
HQGNG + +F AK + L T D YL+++ L++
Sbjct: 161 HQGNGTASICAEDASVFTFSIHAQKNFPFAKAISDLDVGLPDGTGDTVYLQQLAWALDQV 220
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYL 401
PD+++Y AG D +D LG LA++ G+ RDE+VF R+RRVP+ + +GGY
Sbjct: 221 FARARPDLVIYLAGADPYCDDRLGRLALTFDGLAARDEMVFAACRDRRVPVAVAMAGGY- 279
Query: 402 KQTARIIADSI 412
A +I D++
Sbjct: 280 ---AHVIDDTV 287
Score = 44.7 bits (104), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
T+ A +AL+ +IN+ GG HHA G GFC + D ++ ++L + +VD
Sbjct: 99 ATIAACRIALQETCAINLAGGTHHAHADHGEGFCVFNDAAVAARVLRAEGCVQRLAVVDC 158
Query: 64 DAHQ 67
D HQ
Sbjct: 159 DVHQ 162
>gi|402823253|ref|ZP_10872687.1| histone deacetylase superfamily protein [Sphingomonas sp. LH128]
gi|402263213|gb|EJU13142.1| histone deacetylase superfamily protein [Sphingomonas sp. LH128]
Length = 303
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 129/293 (44%), Gaps = 26/293 (8%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
+V+ P Y V + E+ F K+ + L + V A P+ + E
Sbjct: 4 VVHHPGYAV---ETERTGTFPHDKYALVMRLLGESGVPMTVHA----------PEVMPRE 50
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
L H Y+ + V + A+ ++ L P GGT A LAL
Sbjct: 51 WLEAVHDPVYVAQV-IGCAVPTAKQRRIGFAIDERISRRSQLSP-----GGTWLAAKLAL 104
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
+ G++ N GG HHA G G+C + D++L L + +S +I+DLD HQG+G
Sbjct: 105 KHGYAANSAGGSHHALADTGAGYCVFNDLALAANRLIEEGDVSRILILDLDVHQGDGTAA 164
Query: 293 DFMNETRIFIM-----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ IF + + T KA+ ++ + L T D YLE + L L F P
Sbjct: 165 LTAGRSDIFTLSIHAEKNFPTRKARSSL--DVGLPDATGDAGYLEALAGSLPMVLDRFVP 222
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
D+I+ AG D +D LG L+++ +G+ RD V +A+ R +P+ GGY
Sbjct: 223 DLILLQAGVDAHADDKLGRLSLTDEGLASRDRYVATEAKRRGIPLASTLGGGY 275
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A LAL+ G++ N GG HHA G G+C + D++L L + +S +I+DL
Sbjct: 95 GTWLAAKLALKHGYAANSAGGSHHALADTGAGYCVFNDLALAANRLIEEGDVSRILILDL 154
Query: 64 DAHQ 67
D HQ
Sbjct: 155 DVHQ 158
>gi|187929021|ref|YP_001899508.1| histone deacetylase superfamily protein [Ralstonia pickettii 12J]
gi|187725911|gb|ACD27076.1| histone deacetylase superfamily [Ralstonia pickettii 12J]
Length = 334
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 116/243 (47%), Gaps = 13/243 (5%)
Query: 165 EPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGT 224
E ++ LL+AHT +Y++++ A P V++ R G T
Sbjct: 57 EAPRADDDALLLAHTSEYVEAVSAGRLDPARQREIGFPWSPE-MVERS-----RRSAGAT 110
Query: 225 LEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA----MIV 280
+ A AL G ++N+ GG HHA KGGGFC + D ++ + + + + A IV
Sbjct: 111 MAACEAALADGIAVNLAGGTHHAYADKGGGFCVFNDAAIASRWIQRRPGRTPANFPVAIV 170
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAG 337
DLD HQGNG ++ +F + KEA I L D+ YL+ +
Sbjct: 171 DLDVHQGNGTASILRDDAAVFTLSLHGEKNYPFRKEASDLDIGLHDGCGDEDYLQALTGA 230
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L+ F P +I+Y AG D D LG L ++ QG+ RRD+ VF A +RR+PI + +
Sbjct: 231 LDILAGRFKPQLIIYLAGADPHEGDRLGRLKLTLQGLARRDQEVFDFAYQRRIPIAVTMA 290
Query: 398 GGY 400
GGY
Sbjct: 291 GGY 293
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA----MI 60
T+ A AL G ++N+ GG HHA KGGGFC + D ++ + + + + A I
Sbjct: 110 TMAACEAALADGIAVNLAGGTHHAYADKGGGFCVFNDAAIASRWIQRRPGRTPANFPVAI 169
Query: 61 VDLDAHQ 67
VDLD HQ
Sbjct: 170 VDLDVHQ 176
>gi|398384724|ref|ZP_10542752.1| deacetylase, histone deacetylase/acetoin utilization protein
[Sphingobium sp. AP49]
gi|397722004|gb|EJK82549.1| deacetylase, histone deacetylase/acetoin utilization protein
[Sphingobium sp. AP49]
Length = 299
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 104/221 (47%), Gaps = 13/221 (5%)
Query: 191 NVAAISEVCPLVAVPN------YFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGF 244
+ A + EV L P+ + V + +R GGT A LAL G++ N GG
Sbjct: 57 DPAYVDEVLALAVPPDKERRIGFPVTEAVMRRSLLSPGGTWMAARLALTHGYAANGAGGS 116
Query: 245 HHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIME 304
HHA G G+C + D+++ L + +I+DLD HQG+G +F +
Sbjct: 117 HHALADTGAGYCIFNDLAIAANRLIAEGDAAHILILDLDVHQGDGTASLMAGRGDVFTLS 176
Query: 305 TCI-----TSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVL 359
KA+ + + LA T D YL + L R L F PD+I+Y AG D
Sbjct: 177 IHAERNFPVRKARSTLD--LGLADGTGDAEYLAALADILPRVLDDFMPDLILYQAGIDSH 234
Query: 360 LNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
++D LG LA++ G+ RD +V AR RR+P+ GGY
Sbjct: 235 VDDRLGRLALTDAGLDARDRMVMRAARARRIPLASTVGGGY 275
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A LAL G++ N GG HHA G G+C + D+++ L + +I+DL
Sbjct: 95 GTWMAARLALTHGYAANGAGGSHHALADTGAGYCIFNDLAIAANRLIAEGDAAHILILDL 154
Query: 64 DAHQ 67
D HQ
Sbjct: 155 DVHQ 158
>gi|392422523|ref|YP_006459127.1| histone deacetylase family protein [Pseudomonas stutzeri CCUG
29243]
gi|390984711|gb|AFM34704.1| histone deacetylase family protein [Pseudomonas stutzeri CCUG
29243]
Length = 306
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 142/302 (47%), Gaps = 34/302 (11%)
Query: 112 PIVYRPEYNV-----HFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEP 166
P+VY +Y+ H F +EK ++ + ++LV T + ++ P
Sbjct: 4 PLVYHDDYSPPLPPGHRFPMEK----------------FRLLRDHLVALGLTTDEALLRP 47
Query: 167 QEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLE 226
+ S++ L +AH Y+ ++ + E+ L +P + + R +R VGG+L
Sbjct: 48 ELCSQDILALAHAPDYVT--RYCSGEMSRDELRRL-GLP--WSPELAQRTVRA-VGGSLL 101
Query: 227 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 286
A AL+ G + ++ GG HHA GFC + D++++ L +S + +I D D HQ
Sbjct: 102 AAEQALQHGLACHLAGGTHHAHHDHASGFCIFNDLAVIALYLLESGRVGRVLIFDCDVHQ 161
Query: 287 GNGYEKDFMN-ETRIFIMETC----ITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERS 341
G+G + N + I C T KA I L P D+ YL+ + L
Sbjct: 162 GDGTARILENVPDAVTISLHCEKNFPTRKAHS--DWDIPLPPGMGDEAYLKVVHDTLNYL 219
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYL 401
L + PD+++Y+AG DV +D LGLL+++ G+ RD V R +P+V L GGY
Sbjct: 220 LPIYQPDLVLYDAGVDVHRDDALGLLSLTDAGLAARDSAVLDHCLGRNIPVVGLIGGGYD 279
Query: 402 KQ 403
K
Sbjct: 280 KD 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL+ G + ++ GG HHA GFC + D++++ L +S + +I D
Sbjct: 98 GSLLAAEQALQHGLACHLAGGTHHAHHDHASGFCIFNDLAVIALYLLESGRVGRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|359454587|ref|ZP_09243865.1| acetoin utilization protein AcuC [Pseudoalteromonas sp. BSi20495]
gi|358048376|dbj|GAA80114.1| acetoin utilization protein AcuC [Pseudoalteromonas sp. BSi20495]
Length = 305
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 141/318 (44%), Gaps = 39/318 (12%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDN-----IIEPQ 167
I+Y P +N L+ LHPFD +K+ AK IT+ + II P
Sbjct: 3 IIYEPRFNYQLGLLKYLHPFDGEKF-----------------AKVITELDSLNIEIIHPM 45
Query: 168 EVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNY-FVQKCYLRPMRYHVGGTLE 226
E ++ + + ++ L S + + P + ++ F+ L PMR V GTL
Sbjct: 46 EPVSSVVINEYLNELMRKLVLSKTLVFRALEVPKIPFVSFNFLDNKILLPMRLAVAGTLL 105
Query: 227 AGFLALRRG---WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS---TAMIV 280
AL G W N+ GGFHHAS GFC Y DI + + L ++ +S +I+
Sbjct: 106 GAERALGSGDIMW--NLSGGFHHASNVNMEGFCIYNDIGISYQQLRKNGQLSETDKVLII 163
Query: 281 DLDAHQGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKI 334
D+DAH GNG F + I +++ + + + + L E YL+K+
Sbjct: 164 DVDAHHGNGNAYSFKDNENIHLLDVYNADIYPTSDFTRNRVNFPVPLKSGVEGHEYLDKL 223
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
L+ + ++ AGTDVL D LG ++ + + R++ + + +P V+
Sbjct: 224 NQALKLVKADYALAFVI--AGTDVLAIDKLGGFKLTVKDVAEREKFILSHLKSLEIPTVV 281
Query: 395 LTSGGYLKQTARIIADSI 412
GGY KQ+A I +I
Sbjct: 282 TGGGGYSKQSALAITAAI 299
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 13/116 (11%)
Query: 4 GTLEAGFLALRRG---WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS---T 57
GTL AL G W N+ GGFHHAS GFC Y DI + + L ++ +S
Sbjct: 102 GTLLGAERALGSGDIMW--NLSGGFHHASNVNMEGFCIYNDIGISYQQLRKNGQLSETDK 159
Query: 58 AMIVDLDAHQFSDYYFPSAHSIKRKRKVEFLKERKALEDEITSEPQESVVTRPWPI 113
+I+D+DAH + +A+S K + L A + TS+ + V P P+
Sbjct: 160 VLIIDVDAHHGNG----NAYSFKDNENIHLLDVYNA-DIYPTSDFTRNRVNFPVPL 210
>gi|326800435|ref|YP_004318254.1| histone deacetylase [Sphingobacterium sp. 21]
gi|326551199|gb|ADZ79584.1| Histone deacetylase [Sphingobacterium sp. 21]
Length = 300
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 113/260 (43%), Gaps = 9/260 (3%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQK 211
LV + + P EV E + +AH Y + LK + N++ + + + K
Sbjct: 32 LVYEGTVLPNAFFRPHEVDEHYITLAHQITYWEKLK-NLNLSTKE-----IRRTGFSLSK 85
Query: 212 CYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS 271
+ V GT+E AL+ G + NI GG HHA G GFC D ++ L
Sbjct: 86 LLVYREISIVQGTIECCDHALQDGIAFNIAGGTHHAGSNWGEGFCLLNDQAIGAHYLLSQ 145
Query: 272 KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQ 328
K +I+DLD HQGNG F +E R+F KE I L D+
Sbjct: 146 KKAKKILIIDLDVHQGNGTADIFKSEQRVFTFSMHCQRNFPFRKEHSDLDIGLPEGVGDE 205
Query: 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER 388
YL +E L+ P+ + Y AG DVL D LG L++S G RDE+VF R
Sbjct: 206 EYLGILEKNLDALFNQVKPEFVFYLAGVDVLETDKLGWLSLSKPGCKTRDEIVFEYCRRF 265
Query: 389 RVPIVMLTSGGYLKQTARII 408
VP+ + GGY I+
Sbjct: 266 GVPVQVSMGGGYSTHIKDIV 285
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+E AL+ G + NI GG HHA G GFC D ++ L K +I+DL
Sbjct: 97 GTIECCDHALQDGIAFNIAGGTHHAGSNWGEGFCLLNDQAIGAHYLLSQKKAKKILIIDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|307105160|gb|EFN53410.1| hypothetical protein CHLNCDRAFT_25722 [Chlorella variabilis]
Length = 330
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 128/300 (42%), Gaps = 31/300 (10%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ +L H F + I + + D +++P++V +
Sbjct: 24 PVVYHPLYSAP--QLAPGHRFPMAVFSTIH--------------RLLLADGVVDPRQVHQ 67
Query: 172 EQLL-------IAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGG 223
L +AH +Y+ + S + + + A + L V G
Sbjct: 68 PSALPGRDLLHLAHAAEYVDAFCGGSLDEQRVRRIGFGEATRTRLLVDRTL----AEVAG 123
Query: 224 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 283
T+ LAL G + N GG HHA G GFC D+++ +LL + +I+DLD
Sbjct: 124 TILTAELALGHGLACNTAGGTHHAFSDYGSGFCILNDLAITAQLLLHQRRCQRILILDLD 183
Query: 284 AHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLER 340
HQG+G F +F + S K+A I L T D YL + L
Sbjct: 184 VHQGDGTAAIFSGRQDVFTLSVHAASNFPARKQASHLDIALPDGTADNEYLRVVAESLSG 243
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
L++F PD+++Y+AG D +D LG LA+S G+ RR+ LV VP+ GGY
Sbjct: 244 VLQAFRPDLVLYDAGVDPHADDALGRLALSDAGLWRRELLVLDSCLGMGVPVAAYVGGGY 303
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G + N GG HHA G GFC D+++ +LL + +I+DL
Sbjct: 123 GTILTAELALGHGLACNTAGGTHHAFSDYGSGFCILNDLAITAQLLLHQRRCQRILILDL 182
Query: 64 DAHQ 67
D HQ
Sbjct: 183 DVHQ 186
>gi|422002976|ref|ZP_16350210.1| deacetylase [Leptospira santarosai serovar Shermani str. LT 821]
gi|417258446|gb|EKT87834.1| deacetylase [Leptospira santarosai serovar Shermani str. LT 821]
Length = 292
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 136/301 (45%), Gaps = 37/301 (12%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDN------IIEP 166
+VY P+YN+ H F ++K++ I++ + QD+ + P
Sbjct: 1 MVYHPDYNIDL----GPHIFPARKYQMIYD--------------LVKQDHKLANLYVYRP 42
Query: 167 QEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLE 226
+ ++ L + HTE++L F I+E +P + K ++ VGGT+
Sbjct: 43 EPAKDKDLALVHTEEFLND----FFSLKITERTQSSELP---LTKQIVQSFVLAVGGTIL 95
Query: 227 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 286
A L + + +IGGGFHH+ + GFC D ++ VKL ++ + +DLD HQ
Sbjct: 96 ATELTEKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIAVKLYQRAYPGRKILFIDLDLHQ 155
Query: 287 GNGYEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSL 342
GNG F + +F E K K + +E T D YLE + L +
Sbjct: 156 GNGNSVVFQEDPDVFTFSMHQENLYPKKEKSGLDIPLEEG--TNDGKYLELLVESLRKIE 213
Query: 343 RSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402
F PD+I Y AG D D LG L ++ QG+ +RD++V V V+L +GGY K
Sbjct: 214 SDFKPDLIFYIAGADPFEGDSLGDLKLTFQGLRKRDKIVRDFVSALDVSAVILPAGGYAK 273
Query: 403 Q 403
Sbjct: 274 D 274
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A L + + +IGGGFHH+ + GFC D ++ VKL ++ + +DL
Sbjct: 92 GTILATELTEKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIAVKLYQRAYPGRKILFIDL 151
Query: 64 DAHQ 67
D HQ
Sbjct: 152 DLHQ 155
>gi|392555154|ref|ZP_10302291.1| histone deacetylase superfamily protein [Pseudoalteromonas undina
NCIMB 2128]
Length = 305
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 138/299 (46%), Gaps = 25/299 (8%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
++Y P +N L+ LHPFD +K+ + + L + II P E
Sbjct: 3 VIYEPGFNYQLGLLKYLHPFDGEKFAKVISELGG------------SDIEIIYPSEPVPT 50
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNY-FVQKCYLRPMRYHVGGTLEAGFLA 231
+++ + + ++ L S + + P + ++ F+ K L PMR V GTL A
Sbjct: 51 KVINEYLNELMRKLVLSKTLVLRTLEVPSIPFVSFGFIDKKILTPMRLAVSGTLLGAENA 110
Query: 232 LRRGWSI-NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS---TAMIVDLDAHQG 287
L+ G + N+ GGFHHAS GFC Y D+ + + L +S +S +I+D+DAH G
Sbjct: 111 LKSGEIMWNLSGGFHHASYANMEGFCVYNDVGISYQQLRKSGHLSETDKVLIIDVDAHHG 170
Query: 288 NGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERS 341
NG F + + +++ + + + + L E YLEK+ LE
Sbjct: 171 NGNAFSFKDNENVHLLDVYNEDIYPTSQYTRNRVNFPVPLKSGVEGCEYLEKLTQALELI 230
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
++ +V AGTDVL D LG ++ + + +R++++ + +P V+ GGY
Sbjct: 231 TVNYALVFVV--AGTDVLAVDKLGGFKLTVEDVAKREKIILSHLKTLEIPTVVTGGGGY 287
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 4 GTLEAGFLALRRGWSI-NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS---TAM 59
GTL AL+ G + N+ GGFHHAS GFC Y D+ + + L +S +S +
Sbjct: 102 GTLLGAENALKSGEIMWNLSGGFHHASYANMEGFCVYNDVGISYQQLRKSGHLSETDKVL 161
Query: 60 IVDLDAHQFSDYYFPSAHSIKRKRKVEFL 88
I+D+DAH + +A S K V L
Sbjct: 162 IIDVDAHHGNG----NAFSFKDNENVHLL 186
>gi|421141919|ref|ZP_15601898.1| Histone deacetylase superfamily protein [Pseudomonas fluorescens
BBc6R8]
gi|404506939|gb|EKA20930.1| Histone deacetylase superfamily protein [Pseudomonas fluorescens
BBc6R8]
Length = 306
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 137/298 (45%), Gaps = 22/298 (7%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F P D + F L H LVE+ ++ P+
Sbjct: 2 PLPLIYHDDYSPEF-------PADHRFPMDKFRLLRDH----LVESGLTRDSQLLRPELC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
E L +AH Y++ N E + +P + + R +R VGG+L A
Sbjct: 51 PAEILALAHEPGYIERY---MNGELSREDQRRLGLP--WSEALARRTVRA-VGGSLLAAE 104
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
AL G + ++ GG HHA GFC + D++++ L S ++ +I D D HQG+G
Sbjct: 105 QALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDCDVHQGDG 164
Query: 290 YEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSF 345
+ +++T I + K A + + I L D YL+ ++ L L +
Sbjct: 165 TAR-ILHDTPDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLKVVDDALNYLLPLY 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD+++Y+AG DV +D LG L ++ QG+ RDE V R +P+V + GGY K
Sbjct: 224 QPDLVLYDAGVDVHKDDALGYLKLTDQGVAARDESVMRHCLGRDIPVVGVIGGGYSKD 281
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ L S ++ +I D
Sbjct: 98 GSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|332706616|ref|ZP_08426677.1| putative deacetylase [Moorea producens 3L]
gi|332354500|gb|EGJ33979.1| putative deacetylase [Moorea producens 3L]
Length = 283
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 120/258 (46%), Gaps = 13/258 (5%)
Query: 148 IFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPN 206
++ L++ T P E L + HT Y+++ + + + A+ + L P
Sbjct: 7 LYQLLLQEDIATPKQFHTPDLPPLEWLHLVHTPAYVQAYYEGTLDPKAVRRIG-LPWSPA 65
Query: 207 YFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVK 266
+ C VGGT+ LAL +G + N GG HHA G GFC + D+++ +
Sbjct: 66 LVKRTCTA------VGGTILTAKLALSQGLACNTAGGTHHAFPNYGSGFCIFNDLAIASR 119
Query: 267 LLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIM----ETCITSKAKEAIRCRIELA 322
+L Q + +IVDLD HQG+G F NE +F E SK K+ I L
Sbjct: 120 VLQQLGLVQKILIVDLDVHQGDGTAFIFQNEHSVFTFSMHCEVNFPSK-KQKSDLDIPLP 178
Query: 323 PYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVF 382
+D YL+ + L L F P++++Y+AG D + D LG LA++ GI RRD V
Sbjct: 179 EGMDDDAYLQTLAKYLPDLLSGFKPNLVLYDAGVDPHVEDHLGKLALTDTGIYRRDMQVL 238
Query: 383 MKARERRVPIVMLTSGGY 400
+P+ + GGY
Sbjct: 239 STCVAAGIPVASVIGGGY 256
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL +G + N GG HHA G GFC + D+++ ++L Q + +IVDL
Sbjct: 76 GTILTAKLALSQGLACNTAGGTHHAFPNYGSGFCIFNDLAIASRVLQQLGLVQKILIVDL 135
Query: 64 DAHQ--FSDYYFPSAHSI 79
D HQ + + F + HS+
Sbjct: 136 DVHQGDGTAFIFQNEHSV 153
>gi|341616230|ref|ZP_08703099.1| hypothetical protein CJLT1_14807 [Citromicrobium sp. JLT1363]
Length = 320
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 91/189 (48%), Gaps = 7/189 (3%)
Query: 217 MRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST 276
+R+ GGT A LA+ G++ N G HHA G GFC + D+++ L
Sbjct: 79 VRHTNGGTWLAAQLAMEHGYAANSAAGSHHALYDTGAGFCVFNDLAVCANRLIGEAQADR 138
Query: 277 AMIVDLDAHQGNGYEKDFMNETRIFIM-----ETCITSKAKEAIRCRIELAPYTEDQHYL 331
+IVD D HQG+G IF + KA+ ++ I L T D YL
Sbjct: 139 VLIVDCDVHQGDGTASLTAGRDDIFTFSIHAEKNFPVRKARSSLD--IGLPDGTGDDDYL 196
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
++A L R L F PDI++Y AG D ND LG LA+S G+ RR+ V R RRVP
Sbjct: 197 AVLDAHLPRLLDDFAPDIVLYQAGVDPHANDKLGRLALSDSGLERRERYVVDAVRSRRVP 256
Query: 392 IVMLTSGGY 400
+ GGY
Sbjct: 257 LASALGGGY 265
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A LA+ G++ N G HHA G GFC + D+++ L +IVD
Sbjct: 85 GTWLAAQLAMEHGYAANSAAGSHHALYDTGAGFCVFNDLAVCANRLIGEAQADRVLIVDC 144
Query: 64 DAHQ 67
D HQ
Sbjct: 145 DVHQ 148
>gi|83816178|ref|YP_446172.1| histone deacetylase/AcuC/AphA family protein [Salinibacter ruber
DSM 13855]
gi|294508098|ref|YP_003572156.1| histone deacetylase [Salinibacter ruber M8]
gi|83757572|gb|ABC45685.1| histone deacetylase/AcuC/AphA family protein [Salinibacter ruber
DSM 13855]
gi|294344426|emb|CBH25204.1| histone deacetylase [Salinibacter ruber M8]
Length = 307
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 137/304 (45%), Gaps = 27/304 (8%)
Query: 122 HFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEK 181
++ L + HPF K+ + L ++ I +++ P++ L HT
Sbjct: 9 YYVPLPEGHPFPMAKFPALHQRL--------LDEDLIRPTDVVAPRQADWTDLRRVHTAD 60
Query: 182 YLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINI 240
YL L + S + A + +P + ++ R R V GT+ A +AL G + N+
Sbjct: 61 YLTHLAEGSLSDHAERRM----GLP--WSERLVYR-SRLAVQGTINAALMALTDGVAANL 113
Query: 241 GGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRI 300
GG HHA G GFC D+++ +++L + +IVDLD HQGN F ++ +
Sbjct: 114 AGGTHHAFPGHGEGFCVLNDVAVAIRVLQAACWAQRVLIVDLDVHQGNANAAVFADDASV 173
Query: 301 FIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTD 357
F K + L T DQ YL+ + + L ++L + PD++ Y G D
Sbjct: 174 FTFSMHGAKNYPFEKPPSSLDVPLDDATGDQSYLDTLRSYLPQTLDAVQPDLVFYLGGID 233
Query: 358 VLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLAD 417
V +D G L+++ +G+ RD V + + P+ +L SGGY AD+ AD
Sbjct: 234 VATDDRFGRLSLTREGLHARDRYVLEQIQAHNHPVALLLSGGY--------ADTPETTAD 285
Query: 418 LGLI 421
L I
Sbjct: 286 LHAI 289
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A +AL G + N+ GG HHA G GFC D+++ +++L + +IVDL
Sbjct: 96 GTINAALMALTDGVAANLAGGTHHAFPGHGEGFCVLNDVAVAIRVLQAACWAQRVLIVDL 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|411008749|ref|ZP_11385078.1| histone deacetylase/AcuC/AphA family protein [Aeromonas aquariorum
AAK1]
Length = 298
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 96/193 (49%), Gaps = 7/193 (3%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
VG TL A AL +G + I GG+HHA G GFC + D+ + + +IV
Sbjct: 93 VGATLAASRHALAQGCGLQISGGYHHAHRDFGSGFCLFNDLVIAAQTCLDEGRCEQVLIV 152
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITS-----KAKEAIRCRIELAPYTEDQHYLEKIE 335
DLD HQG+G + + R I+ + + K A L ED YL +
Sbjct: 153 DLDVHQGDGSAA--LCQGRRDIITLSLHGEHNFPRHKPASHMDFPLPSGMEDDAYLSTLA 210
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
L +LR + PD+I+Y AG DV D LG LA+S +G+ +RD +VF A+ +PIV +
Sbjct: 211 EALNLALRLYAPDLILYQAGVDVHHADELGYLALSDEGVRQRDAMVFDCAQRHGLPIVAV 270
Query: 396 TSGGYLKQTARII 408
GGY + +I
Sbjct: 271 PGGGYRRDWQHLI 283
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
TL A AL +G + I GG+HHA G GFC + D+ + + +IVDLD
Sbjct: 96 TLAASRHALAQGCGLQISGGYHHAHRDFGSGFCLFNDLVIAAQTCLDEGRCEQVLIVDLD 155
Query: 65 AHQ 67
HQ
Sbjct: 156 VHQ 158
>gi|405355313|ref|ZP_11024539.1| Deacetylase [Chondromyces apiculatus DSM 436]
gi|397091655|gb|EJJ22457.1| Deacetylase [Myxococcus sp. (contaminant ex DSM 436)]
Length = 279
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 119/267 (44%), Gaps = 9/267 (3%)
Query: 145 WKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAV 204
++ + L+E ++ I E E L HT +YL +L A
Sbjct: 4 YRLLREALLERGVLSPAAITESTPCPREDLERVHTPRYLDALFHGTLTEAELRRLGFPWS 63
Query: 205 PNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLL 264
P VQ+ V GT++AG ALR G N+ GG HH G GFC + DI++
Sbjct: 64 PG-LVQR-----FAAAVAGTIDAGRAALRDGIGGNLSGGTHHGFPDHGEGFCVFNDIAVA 117
Query: 265 VKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIEL 321
+++L ++ A++VDLD HQGNG F + +F + K+ + L
Sbjct: 118 IRVLQAEGALRRAVVVDLDVHQGNGTAAVFAGDDAVFTFSMHGENNFPFRKQPSHLDVGL 177
Query: 322 APYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV 381
T D YL+ + L L + + AG D L D LG L+++ G+ RD LV
Sbjct: 178 PDGTGDAEYLDALALYLPEVLDRAGACALFFQAGVDPLTEDALGRLSLTHAGLRERDRLV 237
Query: 382 FMKARERRVPIVMLTSGGYLKQTARII 408
AR+R +P+V+ GGY K + I
Sbjct: 238 LEAARQRGIPVVLTLGGGYAKPLSATI 264
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++AG ALR G N+ GG HH G GFC + DI++ +++L ++ A++VDL
Sbjct: 76 GTIDAGRAALRDGIGGNLSGGTHHGFPDHGEGFCVFNDIAVAIRVLQAEGALRRAVVVDL 135
Query: 64 DAHQ 67
D HQ
Sbjct: 136 DVHQ 139
>gi|421615856|ref|ZP_16056875.1| histone deacetylase family protein [Pseudomonas stutzeri KOS6]
gi|409782038|gb|EKN61605.1| histone deacetylase family protein [Pseudomonas stutzeri KOS6]
Length = 306
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 140/304 (46%), Gaps = 34/304 (11%)
Query: 112 PIVYRPEYNV-----HFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEP 166
P+V+ +Y+ H F +EK ++ + ++LV T ++ P
Sbjct: 4 PLVFHDDYSPPLPPGHRFPMEK----------------FRLLRDHLVALGMTTDAALLRP 47
Query: 167 QEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLE 226
Q S + L +AH Y++ ++ E+ L +P + + R +R VGG+L
Sbjct: 48 QMCSRDILALAHDRDYVE--RYCSGEMGRDELRRL-GLP--WSPELAQRTVRA-VGGSLL 101
Query: 227 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 286
A AL+ G + ++ GG HHA GFC + D++++ L +S + +I D D HQ
Sbjct: 102 AAEQALQHGLACHLAGGTHHAHRDHASGFCIFNDLAVIALYLLESGRVGRVLIFDCDVHQ 161
Query: 287 GNGYEKDFMN-----ETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERS 341
G+G + N + + T KA I L P +D YL+ + L
Sbjct: 162 GDGTARILENVPDAVTVSLHCEKNFPTRKAHSDWD--IPLPPGMDDDAYLKVVHDTLNYL 219
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYL 401
L + PD+++Y+AG DV +D LGLL+++ G+ RD V R +P+V L GGY
Sbjct: 220 LPIYQPDLVLYDAGVDVHRDDALGLLSLTDAGLAARDSAVLDHCLGRDIPLVGLIGGGYD 279
Query: 402 KQTA 405
K A
Sbjct: 280 KDRA 283
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL+ G + ++ GG HHA GFC + D++++ L +S + +I D
Sbjct: 98 GSLLAAEQALQHGLACHLAGGTHHAHRDHASGFCIFNDLAVIALYLLESGRVGRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|339489485|ref|YP_004704013.1| histone deacetylase superfamily protein [Pseudomonas putida S16]
gi|338840328|gb|AEJ15133.1| histone deacetylase superfamily protein [Pseudomonas putida S16]
Length = 304
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 143/302 (47%), Gaps = 22/302 (7%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F E P D + H ++L+++ T ++ P
Sbjct: 2 PLPLIYHEDYSPEF-PAEHRFPMDKFRLLH----------DHLIDSGLTTDQALLRPDIC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
+ L +AH Y++ N E + +P + + R +R VGG+L +
Sbjct: 51 PNDILALAHDRSYIERY---MNGDLSREDQRRLGLP--WSEALARRTVRA-VGGSLLSAE 104
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
+AL++G + ++ GG HHA GFC + D++++ + L ++ + +I D D HQG+G
Sbjct: 105 MALQQGIACHLAGGTHHAHYDHPAGFCIFNDLAVISRYLLEAGRVHRVLIFDCDVHQGDG 164
Query: 290 YEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSF 345
+ +++T I + + A + + I L D YL+ ++ L L +
Sbjct: 165 TAR-ILHDTPDAITVSLHCEQNFPARKAQSDWDIPLPRGMGDMAYLKVVDDALNYLLPLY 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PD+++Y+AG DV +D LG L ++ G+ RDE V R +P+V + GGY K A
Sbjct: 224 RPDLVLYDAGVDVHKDDALGYLQLTDAGVAARDEAVLRHCLGRDIPVVGVIGGGYSKDRA 283
Query: 406 RI 407
+
Sbjct: 284 AL 285
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L + +AL++G + ++ GG HHA GFC + D++++ + L ++ + +I D
Sbjct: 98 GSLLSAEMALQQGIACHLAGGTHHAHYDHPAGFCIFNDLAVISRYLLEAGRVHRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|396582606|gb|AFN88470.1| histone deacetylase [Aeromonas hydrophila]
Length = 319
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 135/306 (44%), Gaps = 37/306 (12%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
I Y P Y+ L H F K++ +F L Y + E + E
Sbjct: 26 IFYHPLYSA--LALPARHRFPLAKYQALFERLGS--LGY----------PLAEAAPATPE 71
Query: 173 QLLIAHTEKYLKS-LKWSFNVAAISEV----CPLVAVPNYFVQKCYLRPMRYHVGGTLEA 227
Q+ H Y+++ L + + AI ++ PL+ R +R VG TL A
Sbjct: 72 QIKRVHDAAYVEAALAGTLDAGAIRQLGFPWSPLLIE----------RTLR-SVGATLAA 120
Query: 228 GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQG 287
AL +G + I GG+HHA G GFC + D+ + ++ +IVDLD HQG
Sbjct: 121 SRHALEQGCGLQISGGYHHAHRDVGSGFCLFNDLVIAAQMCLDEGRCEQVLIVDLDVHQG 180
Query: 288 NGYEKDFMNETRIFIMETCITS-----KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSL 342
+G + + R I+ + + K A L D YL + L +L
Sbjct: 181 DGSAA--LCQGRRDIITFSLHGEHNFPRHKPASHMDFPLPSGMADDAYLTTLAEALNLAL 238
Query: 343 RSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402
R + PD+I+Y AG DV +D LG LA+S +G+ +RD +VF A +PI + GGY +
Sbjct: 239 RLYTPDLILYQAGVDVHKDDELGYLALSDEGVRQRDAMVFDCALRHGLPIAAVPGGGYRR 298
Query: 403 QTARII 408
++I
Sbjct: 299 DWQQLI 304
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
TL A AL +G + I GG+HHA G GFC + D+ + ++ +IVDLD
Sbjct: 117 TLAASRHALEQGCGLQISGGYHHAHRDVGSGFCLFNDLVIAAQMCLDEGRCEQVLIVDLD 176
Query: 65 AHQ 67
HQ
Sbjct: 177 VHQ 179
>gi|149276367|ref|ZP_01882511.1| deacetylase [Pedobacter sp. BAL39]
gi|149232887|gb|EDM38262.1| deacetylase [Pedobacter sp. BAL39]
Length = 299
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 122/264 (46%), Gaps = 10/264 (3%)
Query: 148 IFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNY 207
I L+ +I+ + + P ++EE +L +H KY + LK ++ + + +P
Sbjct: 28 IPQQLLHQGWISSEQLFAPDLLNEELVLRSHDPKYWEHLKM---LSLPPKDQRRIGLP-- 82
Query: 208 FVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKL 267
++ R +R GT+E AL G + N+ GG HHA G GFC D ++
Sbjct: 83 LSRQLVERELRI-AQGTVEGALHALEDGIAFNVAGGTHHAGSDWGEGFCLLNDQAIAANY 141
Query: 268 LFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPY 324
L + +I+DLD HQGNG + F ++ R+F KE I LA
Sbjct: 142 LLDKGLVGRVLIIDLDVHQGNGTAEIFADDRRVFTFSMHGDKNFPFRKERSDLDIPLADG 201
Query: 325 TEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMK 384
D +L+K+ L L PD + Y +G D+L +D LG L +S G RD LVF
Sbjct: 202 VGDAEFLKKLAEVLP-GLMHHKPDFVFYLSGVDILDSDRLGKLCLSKAGCRERDRLVFQF 260
Query: 385 ARERRVPIVMLTSGGYLKQTARII 408
R+ +P+ + GGY Q I+
Sbjct: 261 CRDHGLPVQVSMGGGYSPQIKDIV 284
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+E AL G + N+ GG HHA G GFC D ++ L + +I+DL
Sbjct: 97 GTVEGALHALEDGIAFNVAGGTHHAGSDWGEGFCLLNDQAIAANYLLDKGLVGRVLIIDL 156
Query: 64 DAHQ-------FSDYYFPSAHSIKRKRKVEFLKERKALE 95
D HQ F+D S+ + F KER L+
Sbjct: 157 DVHQGNGTAEIFADDRRVFTFSMHGDKNFPFRKERSDLD 195
>gi|117618465|ref|YP_857293.1| histone deacetylase/AcuC/AphA family protein [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
gi|117559872|gb|ABK36820.1| histone deacetylase/AcuC/AphA family protein [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 319
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 131/304 (43%), Gaps = 33/304 (10%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
I Y P Y+ L H F K++ +F L Y + E + E
Sbjct: 26 IFYHPLYSA--LTLPARHRFPLAKYQALFERLGS--LGY----------PLAEAAPATPE 71
Query: 173 QLLIAHTEKYLKS-LKWSFNVAAISEV----CPLVAVPNYFVQKCYLRPMRYHVGGTLEA 227
Q+ H Y+++ L + + AI ++ PL+ R +R VG TL A
Sbjct: 72 QIKRVHDAAYVEAALAGTLDADAIRQLGFPWSPLLME----------RTLR-SVGATLAA 120
Query: 228 GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQG 287
AL +G + I GG+HHA G GFC + D+ + ++ +IVDLD HQG
Sbjct: 121 SRHALEQGCGLQISGGYHHAHRDVGSGFCLFNDLVIAAQVCLDEGRCEQVLIVDLDVHQG 180
Query: 288 NGYEKDFMNETRIFIMETCIT---SKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRS 344
+G I + + K A L D YL + L +LR
Sbjct: 181 DGSAALCQGRRDIITLSLHGEHNFPRYKPASHMDFPLPSGMADDAYLTTLAEALNLALRL 240
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT 404
+ PD+I+Y AG DV +D LG LA+S +GI +RD +VF A +PI + GGY +
Sbjct: 241 YAPDLILYQAGVDVHKDDELGYLALSDEGIRQRDAMVFDCALRHGLPIAAVPGGGYRRDW 300
Query: 405 ARII 408
++I
Sbjct: 301 QQLI 304
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
TL A AL +G + I GG+HHA G GFC + D+ + ++ +IVDLD
Sbjct: 117 TLAASRHALEQGCGLQISGGYHHAHRDVGSGFCLFNDLVIAAQVCLDEGRCEQVLIVDLD 176
Query: 65 AHQ 67
HQ
Sbjct: 177 VHQ 179
>gi|145298536|ref|YP_001141377.1| histone deacetylase/AcuC/AphA family protein [Aeromonas salmonicida
subsp. salmonicida A449]
gi|418362734|ref|ZP_12963359.1| histone deacetylase/AcuC/AphA family protein [Aeromonas salmonicida
subsp. salmonicida 01-B526]
gi|142851308|gb|ABO89629.1| Histone deacetylase/AcuC/AphA family protein [Aeromonas salmonicida
subsp. salmonicida A449]
gi|356686045|gb|EHI50657.1| histone deacetylase/AcuC/AphA family protein [Aeromonas salmonicida
subsp. salmonicida 01-B526]
Length = 309
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 7/193 (3%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
VG TL A AL +G + I GG+HHA G GFC + D+ + + +IV
Sbjct: 93 VGATLAASRHALEQGCGLQISGGYHHAHRAHGSGFCLFNDLVIAAQTCLDEGRCDQVLIV 152
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITS-----KAKEAIRCRIELAPYTEDQHYLEKIE 335
DLD HQG+G + R +I+ + + K A L +D YL+ +
Sbjct: 153 DLDVHQGDGSAA--LCAGRRYIITLSLHGEHNFPRHKPASHLDFALPSGMQDDAYLDTLA 210
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
L +LR + PD+++Y AG DV D LG LA+S +GI +RD +VF A + +P+ +
Sbjct: 211 QALTLALRLYNPDLVLYQAGVDVHHADELGYLALSDEGIRQRDAMVFDCAIKHGLPVAAV 270
Query: 396 TSGGYLKQTARII 408
GGY ++ ++I
Sbjct: 271 PGGGYRREWQQLI 283
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
TL A AL +G + I GG+HHA G GFC + D+ + + +IVDLD
Sbjct: 96 TLAASRHALEQGCGLQISGGYHHAHRAHGSGFCLFNDLVIAAQTCLDEGRCDQVLIVDLD 155
Query: 65 AHQ 67
HQ
Sbjct: 156 VHQ 158
>gi|85709385|ref|ZP_01040450.1| hypothetical protein NAP1_10908 [Erythrobacter sp. NAP1]
gi|85688095|gb|EAQ28099.1| hypothetical protein NAP1_10908 [Erythrobacter sp. NAP1]
Length = 312
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 98/198 (49%), Gaps = 7/198 (3%)
Query: 217 MRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST 276
+R+ GGT A LA+ G++ N G HHA G G+C + D+++ L +
Sbjct: 89 VRHTNGGTWLAAQLAMEHGYAANSAAGSHHALGDTGAGYCVFNDLAVATNRLLAQGDAAR 148
Query: 277 AMIVDLDAHQGNGYEKDFMNETRIFIMETCI-----TSKAKEAIRCRIELAPYTEDQHYL 331
+IVDLD HQG+G +F + KA+ + I L T+D Y+
Sbjct: 149 VLIVDLDVHQGDGTASLLAGREDVFTLSVHAEKNFPVRKARSTLD--IGLPDGTDDDGYM 206
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
E ++ L R + SF PD + Y AG D + D LG LA++ +G+++RD V +AR+R +
Sbjct: 207 EALDKHLPRVIDSFAPDFVFYQAGVDPHVEDKLGRLALTDEGLMQRDRFVVREARQRGLA 266
Query: 392 IVMLTSGGYLKQTARIIA 409
+ GGY + + A
Sbjct: 267 VASALGGGYGEDQRAVAA 284
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A LA+ G++ N G HHA G G+C + D+++ L + +IVDL
Sbjct: 95 GTWLAAQLAMEHGYAANSAAGSHHALGDTGAGYCVFNDLAVATNRLLAQGDAARVLIVDL 154
Query: 64 DAHQ 67
D HQ
Sbjct: 155 DVHQ 158
>gi|116620212|ref|YP_822368.1| histone deacetylase superfamily protein [Candidatus Solibacter
usitatus Ellin6076]
gi|116223374|gb|ABJ82083.1| histone deacetylase superfamily [Candidatus Solibacter usitatus
Ellin6076]
Length = 305
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 156/318 (49%), Gaps = 27/318 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P+ VY Y+++ + H F S+K++ W + + L+ +F ++ + P+
Sbjct: 3 PYRFVYHDRYDLNLGE----HVFPSQKFR------W--LRDRLLHTRFAAAEDFVTPESA 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPL-VAVPNYFVQKCYLRPMRYHVGGTLEAG 228
+++ + + H +Y+ L+ + ++ L + V+ +L GG++ A
Sbjct: 51 TDDDVRLVHDPEYVAKLRG--GTLSYQDILRLEIPYSRQMVEAFWLA-----AGGSILAA 103
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
LAL+ G NIGGGFHHA G GFCA D+++ V+ L + I AM+VD D H GN
Sbjct: 104 RLALQDGIGFNIGGGFHHAFPGHGEGFCAINDVAIAVRRLQADRLIKRAMVVDCDVHHGN 163
Query: 289 GYEKDFMNETRIF---IMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
G F ++ +F I + K I L D YL ++ G +L F
Sbjct: 164 GTAAIFTDDQSVFTLSIHQFNNYPSEKPLSSLDIHLTDGIGDAEYLHRLGNGYRAALTMF 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
P++++Y AG D + D LG L+++ +G++ RD LV A VP+ ++ +GGY A
Sbjct: 224 KPELLMYVAGADPYMEDQLGGLSLTFEGLMERDRLVIRTALTHSVPVAIVLAGGY----A 279
Query: 406 RIIADSILNLADLGLISR 423
+ + D+I A+ +++
Sbjct: 280 QSVEDTITIHANTAAVAK 297
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ A LAL+ G NIGGGFHHA G GFCA D+++ V+ L + I AM+VD
Sbjct: 98 GSILAARLALQDGIGFNIGGGFHHAFPGHGEGFCAINDVAIAVRRLQADRLIKRAMVVDC 157
Query: 64 DAHQ 67
D H
Sbjct: 158 DVHH 161
>gi|221133465|ref|ZP_03559770.1| histone deacetylase superfamily protein [Glaciecola sp. HTCC2999]
Length = 300
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 134/301 (44%), Gaps = 22/301 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+V+ P Y+ L H F +K++ I++ L K + N PQ +
Sbjct: 3 PLVFHPIYSQ--LDLPHRHRFPIEKYQGIYDALIK---------LGVDCANFHTPQALDP 51
Query: 172 EQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
L + Y+ L + A+ + P + ++ R + G L A L
Sbjct: 52 SYLTQIYDHDYIHQLCSGQLDPKAMRRI----GFP--WSEQLIQRTLTAAAGTVLTAE-L 104
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
A+ G ++N+ GG+HHA G GFC D+ L K + + I + +I D D HQG+G
Sbjct: 105 AMEHGKALNLTGGYHHAFADFGSGFCMVNDLYLAAKTMLINPDIDSVLIFDCDVHQGDGT 164
Query: 291 EKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ IF + K+ I LA T D YLE +++ L + P
Sbjct: 165 ALLASKDNDIFTVSIHGEKNFPHRKQVSNIDIGLAKGTGDDEYLETVDSALHLAFVQAQP 224
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D ++Y+AG D+ +ND LG L I+ + + RDE+VF K + +P+ + GGY + +
Sbjct: 225 DAVIYDAGVDIHINDDLGHLDITTKAVRARDEMVFAKCDDAGIPVAAVIGGGYQRDIDAL 284
Query: 408 I 408
+
Sbjct: 285 V 285
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LA+ G ++N+ GG+HHA G GFC D+ L K + + I + +I D
Sbjct: 97 GTVLTAELAMEHGKALNLTGGYHHAFADFGSGFCMVNDLYLAAKTMLINPDIDSVLIFDC 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|428201494|ref|YP_007080083.1| deacetylase [Pleurocapsa sp. PCC 7327]
gi|427978926|gb|AFY76526.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pleurocapsa sp. PCC 7327]
Length = 308
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 135/303 (44%), Gaps = 24/303 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQ-DNIIEPQEVS 170
PIVY P+Y L + H F K+K ++ L A I Q D + P+ S
Sbjct: 4 PIVYHPDY---IAPLPEGHRFPMSKFKLLYELLL---------ADGIAQLDCVYRPEVPS 51
Query: 171 EEQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
E + + H +Y+++ + + + A + L P + C VGGT+
Sbjct: 52 RELIELVHLPEYVRAYCEGTLDPKAQRRI-GLPWSPALANRTCVA------VGGTILTAQ 104
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL+ G + N GG HHA G GFC + D+++ ++L Q + +IVDLD HQG+G
Sbjct: 105 LALQYGLACNTAGGTHHAFPGYGSGFCIFNDLAIATRVLQQLGLVKKVLIVDLDVHQGDG 164
Query: 290 YEKDFMNETRIFIMETCITS---KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
F ++ +F + K+ + L +D YL + L L
Sbjct: 165 TACIFQDDPSVFTFSMHCEANFPNNKQKSDLDVPLPVGLDDDGYLHILAKYLSDVLSQVQ 224
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
PD+++Y+AG D +D LG LA++ GI RR+ V P+ + GGY
Sbjct: 225 PDLVLYDAGVDTHASDRLGKLALTDLGIYRREMQVLTTCLAAGCPVACVIGGGYADDLQG 284
Query: 407 IIA 409
++A
Sbjct: 285 LVA 287
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL+ G + N GG HHA G GFC + D+++ ++L Q + +IVDL
Sbjct: 98 GTILTAQLALQYGLACNTAGGTHHAFPGYGSGFCIFNDLAIATRVLQQLGLVKKVLIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|427408837|ref|ZP_18899039.1| hypothetical protein HMPREF9718_01513 [Sphingobium yanoikuyae ATCC
51230]
gi|425713147|gb|EKU76161.1| hypothetical protein HMPREF9718_01513 [Sphingobium yanoikuyae ATCC
51230]
Length = 300
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 104/217 (47%), Gaps = 13/217 (5%)
Query: 195 ISEVCPLVAVPN------YFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHAS 248
+ EV L P+ + V + +R GGT A LAL G++ N GG HHA
Sbjct: 61 VEEVLTLAVPPDKERRIGFPVTERVMRRALLSPGGTWLAAKLALVHGYAANAAGGSHHAL 120
Query: 249 ETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIM----- 303
G G+C + D+++ L ++ +I+DLD HQG+G +F M
Sbjct: 121 ADSGAGYCVFNDLAIAANRLIAEGDVNRILILDLDVHQGDGTASLMAGRGDVFTMSIHAE 180
Query: 304 ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDP 363
+ KA+ + + LA T D YL + L R L F PD+I+Y AG D ++D
Sbjct: 181 KNFPVRKARSTLD--LGLADDTGDADYLAALGEMLPRVLDDFAPDLILYQAGVDGHVDDR 238
Query: 364 LGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
LG LA+S +G+ RD LV +A R +P+ GGY
Sbjct: 239 LGRLALSDEGLAARDGLVMRQALVRAIPVASCMGGGY 275
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A LAL G++ N GG HHA G G+C + D+++ L ++ +I+DL
Sbjct: 95 GTWLAAKLALVHGYAANAAGGSHHALADSGAGYCVFNDLAIAANRLIAEGDVNRILILDL 154
Query: 64 DAHQ 67
D HQ
Sbjct: 155 DVHQ 158
>gi|424033537|ref|ZP_17772951.1| histone deacetylase domain protein [Vibrio cholerae HENC-01]
gi|408874401|gb|EKM13572.1| histone deacetylase domain protein [Vibrio cholerae HENC-01]
Length = 307
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y+ +L + H + K++ YL++ + + LV+ + +PQ ++
Sbjct: 3 PLIYHPIYSQ--LELPEGHRYPIMKYQ----YLYQAVKDKLVQQDWGQHIEFSQPQPLNV 56
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+++ + H+E+Y+ L V+ + + + + R + G L A A
Sbjct: 57 DEIKLVHSEEYVDLL-----VSGDMPAAKMRRIGFPWSETLVSRTLMSTAGTVLTAE-KA 110
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G +I++ GG+HHA + G GFC + D+ + K + +++ + +I+D D H G+G
Sbjct: 111 LEHGVAIHLSGGYHHAHKDFGSGFCLFNDLVIAAKYMLETEHVDKVLIIDSDVHHGDGTA 170
Query: 292 KDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
+E I + C + K + L+ T D +L + +E +L PD
Sbjct: 171 TLCADELDIITLSFHCDKNFPARKPDSDLDVPLSRGTSDDTFLMTFKEVVEMALNLHRPD 230
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
+++Y+AG D+ +D LG +S QGI RD + +++ VP+ + GGY + ++
Sbjct: 231 MVIYDAGVDIHTDDELGYFDVSTQGIYERDRFIMQLMKDKGVPVAAVVGGGYRSNHSDLV 290
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ AL G +I++ GG+HHA + G GFC + D+ + K + +++ + +I+D
Sbjct: 102 GTVLTAEKALEHGVAIHLSGGYHHAHKDFGSGFCLFNDLVIAAKYMLETEHVDKVLIIDS 161
Query: 64 DAHQ 67
D H
Sbjct: 162 DVHH 165
>gi|255083386|ref|XP_002504679.1| histone deacetylase [Micromonas sp. RCC299]
gi|226519947|gb|ACO65937.1| histone deacetylase [Micromonas sp. RCC299]
Length = 293
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 130/266 (48%), Gaps = 13/266 (4%)
Query: 144 LWKHIFNYLV-EAKFITQDNIIEPQEV-SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCP 200
+++ I+ L+ E + N+ +P + S E+L H E+Y+ F + A+S E
Sbjct: 11 VFREIYRRLLREGVAVPGKNLFQPARMPSLEELTAVHDEEYVNK----FMIGAMSDEELR 66
Query: 201 LVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYAD 260
+ +P + + R + V GT+ LAL G ++N GG HHA + G+C + D
Sbjct: 67 RMGLP--WTEDLVERTLS-EVSGTMLCADLALTCGLAVNTAGGTHHAHRSHASGYCIFND 123
Query: 261 ISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK--AKEAIRCR 318
+++ K + ++ +IVDLD HQG+G + I+ + AK++ R
Sbjct: 124 LAVTAKRVIARGAVERVLIVDLDVHQGDGTASTTAADPGIYTLSVHCEDNFPAKKSTSSR 183
Query: 319 -IELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRR 377
+ L T D Y++ EA L S+ P +++Y+AG DV D LG ++ +G+IRR
Sbjct: 184 DVALPTGTGDDAYIKTTEAALRESIEEHGPQLVLYDAGVDVHGADDLGGFNLTDEGLIRR 243
Query: 378 DELVFMKARERRVPIVMLTSGGYLKQ 403
+ LV R +P+ + GGY K
Sbjct: 244 EALVLDTCVGRGIPVAAVVGGGYDKD 269
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G ++N GG HHA + G+C + D+++ K + ++ +IVDL
Sbjct: 86 GTMLCADLALTCGLAVNTAGGTHHAHRSHASGYCIFNDLAVTAKRVIARGAVERVLIVDL 145
Query: 64 DAHQ 67
D HQ
Sbjct: 146 DVHQ 149
>gi|226355849|ref|YP_002785589.1| histone deacetylase superfamily protein [Deinococcus deserti
VCD115]
gi|226317839|gb|ACO45835.1| putative Histone deacetylase superfamily [Deinococcus deserti
VCD115]
Length = 312
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 95/190 (50%), Gaps = 3/190 (1%)
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 281
G TL A AL+RG IN+GGG HHA + GF D+ + + L + +++D
Sbjct: 101 GATLAATRDALQRGLGINLGGGTHHAFADRAEGFSFLNDVVISARWLLDAGYARRILVLD 160
Query: 282 LDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGL 338
LD HQGNG E R+ + S KE + L T DQ YL+ +E +
Sbjct: 161 LDVHQGNGTASMLRAEPRVLTVSVHAQSNYPFRKERSGLDVGLPDGTGDQAYLQALETQV 220
Query: 339 ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSG 398
+ +F PD + Y AG DVL D LG LA+SP+G+ RD V + A +P ++ +G
Sbjct: 221 APVVTAFRPDFLFYLAGADVLAGDQLGRLALSPEGVRARDHRVLLWAARAGLPTTVVMAG 280
Query: 399 GYLKQTARII 408
GY + +I
Sbjct: 281 GYNRDPQTLI 290
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
TL A AL+RG IN+GGG HHA + GF D+ + + L + +++DLD
Sbjct: 103 TLAATRDALQRGLGINLGGGTHHAFADRAEGFSFLNDVVISARWLLDAGYARRILVLDLD 162
Query: 65 AHQ 67
HQ
Sbjct: 163 VHQ 165
>gi|431804581|ref|YP_007231484.1| histone deacetylase superfamily protein [Pseudomonas putida HB3267]
gi|430795346|gb|AGA75541.1| histone deacetylase superfamily protein [Pseudomonas putida HB3267]
Length = 304
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 142/302 (47%), Gaps = 22/302 (7%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F E P D + H ++L+++ T ++ P
Sbjct: 2 PLPLIYHEDYSPEF-PAEHRFPMDKFRLLH----------DHLIDSGLTTDQALLRPDIC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
+ L +AH Y++ N E + +P + + R +R VGG+L +
Sbjct: 51 PNDILALAHDRSYIERY---MNGDLSREDQRRLGLP--WSEALARRTVRA-VGGSLLSAE 104
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
+AL+ G + ++ GG HHA GFC + D++++ + L ++ + +I D D HQG+G
Sbjct: 105 MALQHGIACHLAGGTHHAHYDHPAGFCIFNDLAVISRYLLEAGRVHRVLIFDCDVHQGDG 164
Query: 290 YEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSF 345
+ +++T I + + A + + I L D YL+ ++ L L +
Sbjct: 165 TAR-ILHDTPDAITVSLHCEQNFPARKAQSDWDIPLPRGMGDMAYLKVVDDALNYLLPLY 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PD+++Y+AG DV +D LG L ++ G+ RDE V R +P+V + GGY K A
Sbjct: 224 RPDLVLYDAGVDVHKDDALGYLQLTDAGVAARDEAVLRHCLGRDIPVVGVIGGGYSKDRA 283
Query: 406 RI 407
+
Sbjct: 284 AL 285
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L + +AL+ G + ++ GG HHA GFC + D++++ + L ++ + +I D
Sbjct: 98 GSLLSAEMALQHGIACHLAGGTHHAHYDHPAGFCIFNDLAVISRYLLEAGRVHRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|340788226|ref|YP_004753691.1| Deacetylase [Collimonas fungivorans Ter331]
gi|340553493|gb|AEK62868.1| Deacetylase [Collimonas fungivorans Ter331]
Length = 311
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 127/297 (42%), Gaps = 22/297 (7%)
Query: 119 YNVHF-FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIA 177
Y+ HF L H F +K++ I + I + T D + L +A
Sbjct: 5 YSDHFVLPLPAGHRFPMQKYRLIHEAALRTISDIDFHEAPTTSDGV----------LALA 54
Query: 178 HTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGW- 236
H Y+ ++ ++ + P V++ R G T+ A AL
Sbjct: 55 HHPHYISAVSAGTLPESVQKAIGFPWTPQ-MVERS-----RRSAGATIAACRAALTDPGR 108
Query: 237 -SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFM 295
++N+ GG HHA +G GFC + D ++ +L+ + + IVDLD HQGNG
Sbjct: 109 IAVNLAGGTHHAFADQGAGFCVFNDAAIAARLMQAERRVQRVAIVDLDVHQGNGTASILA 168
Query: 296 NETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVY 352
N+ +F + KE + LA T DQ YL ++ L L F P +I++
Sbjct: 169 NDDSVFTLSLHGERNYPFDKERSDLDVALADGTGDQAYLSALQDALAAMLERFSPQLIIF 228
Query: 353 NAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIA 409
AG D D LG L +S G+ RRD ++ A R +P+ + +GGY K +A
Sbjct: 229 LAGADPHEGDRLGRLKLSFDGLARRDAMLLETAGRRAIPVAIAMAGGYGKNIQDTVA 285
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQFSDYYFPSAH 77
++N+ GG HHA +G GFC + D ++ +L+ + + IVDLD HQ + A+
Sbjct: 110 AVNLAGGTHHAFADQGAGFCVFNDAAIAARLMQAERRVQRVAIVDLDVHQGNGTASILAN 169
Query: 78 -------SIKRKRKVEFLKERKALE 95
S+ +R F KER L+
Sbjct: 170 DDSVFTLSLHGERNYPFDKERSDLD 194
>gi|383452543|ref|YP_005366532.1| histone deacetylase family protein [Corallococcus coralloides DSM
2259]
gi|380727540|gb|AFE03542.1| histone deacetylase family protein [Corallococcus coralloides DSM
2259]
Length = 592
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/271 (32%), Positives = 126/271 (46%), Gaps = 12/271 (4%)
Query: 151 YLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQ 210
YL+EA + ++ P VS QL H +YL+SL +A I P+
Sbjct: 48 YLLEAGVVRAADVRHPVPVSYAQLARVHDARYLESLSDPATLARI-----YATDPSEVPV 102
Query: 211 KCYLRPMRYHVGGTLEAGFLAL-RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF 269
L +R GGTL A LAL R+G +N+ GGFHHA KGGGFC DI++ V L
Sbjct: 103 DALLDSVRLVCGGTLGAARLALARQGPVVNMAGGFHHARPDKGGGFCTVNDIAVAVADLR 162
Query: 270 QSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCRIELAP-YTEDQ 328
S + ++DLDAH +G + +++I + P +D
Sbjct: 163 ASGFDGSVAVLDLDAHPPDGTAACLAGQPKVWIGSVSGSDWGVLPPGVDETRVPDGCDDV 222
Query: 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER 388
Y++K++ L R S DI AG DVL D G + I+ QG +RD + R R
Sbjct: 223 TYVQKVKDLLTRMPAS---DITFVIAGGDVLSGDRFGRVGITLQGARKRDVAIASALRGR 279
Query: 389 RVPIVMLTSGGYLKQTARIIADSILNLADLG 419
V L GGY ++ ++ A ++L LA LG
Sbjct: 280 AS--VWLPGGGYHAESWKLFAGTVLVLAGLG 308
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 4 GTLEAGFLAL-RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 62
GTL A LAL R+G +N+ GGFHHA KGGGFC DI++ V L S + ++D
Sbjct: 115 GTLGAARLALARQGPVVNMAGGFHHARPDKGGGFCTVNDIAVAVADLRASGFDGSVAVLD 174
Query: 63 LDAH 66
LDAH
Sbjct: 175 LDAH 178
>gi|186686128|ref|YP_001869324.1| histone deacetylase superfamily protein [Nostoc punctiforme PCC
73102]
gi|186468580|gb|ACC84381.1| histone deacetylase superfamily [Nostoc punctiforme PCC 73102]
Length = 305
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 128/300 (42%), Gaps = 20/300 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PI+Y P+Y L + H F K++ ++ L + Q+ P+
Sbjct: 4 PIIYHPDY---IAPLPEGHRFPMSKFRQLYELL--------LADGVANQEQFHTPERPPP 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E + + HT Y+++ + L P + C VGGT+ LA
Sbjct: 53 ELIELVHTPSYVQAYCEGTLDPKLQRRIGLPWSPALANRTCVA------VGGTILTAKLA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G + N GG HHA + G GFC + D+++ ++L + + +IVDLD HQG+G
Sbjct: 107 LSHGLACNTAGGTHHAFPSYGSGFCIFNDLAIACRVLQKFGLVQKILIVDLDVHQGDGTA 166
Query: 292 KDFMNETRIFIMET-CITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
F ++ +F C + K+ + L ED YL+ + L L PD
Sbjct: 167 FIFQDDDSVFTFSMHCEVNFPGTKQNSDLDVPLPVGMEDDAYLQTLANYLSDLLSKVKPD 226
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
++ Y+AG D + D LG LA++ GI RR+ V P+ + GGY ++
Sbjct: 227 LVFYDAGVDPHIGDRLGKLALTDAGIFRREMQVLSTCMSSGYPVACVIGGGYADDMKSLV 286
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G + N GG HHA + G GFC + D+++ ++L + + +IVDL
Sbjct: 98 GTILTAKLALSHGLACNTAGGTHHAFPSYGSGFCIFNDLAIACRVLQKFGLVQKILIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|424047263|ref|ZP_17784823.1| histone deacetylase domain protein [Vibrio cholerae HENC-03]
gi|408884107|gb|EKM22861.1| histone deacetylase domain protein [Vibrio cholerae HENC-03]
Length = 306
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 137/300 (45%), Gaps = 15/300 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y+ L H + K++ YL++ + L + Q + +P +S
Sbjct: 3 PLIYHPVYSQ--LDLPNGHRYPIMKYR----YLYQAVMEKLASEDWGGQIEVFQPSLLST 56
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ + H +Y+ L V + + + + R + G L A A
Sbjct: 57 DDIKRVHDGEYVDLL-----VTGTMPAAKMRRIGFPWSEALITRTLTSTAGTVLTAE-KA 110
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G +I++ GG+HHA + G GFC + D+++ K + + + MI+D D H G+G
Sbjct: 111 LEHGVAIHLSGGYHHAHKNFGSGFCLFNDLAIAAKHMLDHEHVDKVMIIDSDVHHGDGTA 170
Query: 292 KDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
+E I + C + K + L+ T D+ YL + +E ++ PD
Sbjct: 171 TICESEPDIVTLSFHCDKNFPARKPDSDLDVPLSRDTNDETYLMAFKEVVEMAINLHRPD 230
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
+++Y+AG D+ ++D LG +S +GI RD + +ER +P+ + GGY + A ++
Sbjct: 231 MVIYDAGVDIHVDDELGYFNVSTEGIFERDRFLMQLMKERGIPVAAVVGGGYRSEHADLV 290
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ AL G +I++ GG+HHA + G GFC + D+++ K + + + MI+D
Sbjct: 102 GTVLTAEKALEHGVAIHLSGGYHHAHKNFGSGFCLFNDLAIAAKHMLDHEHVDKVMIIDS 161
Query: 64 DAHQ 67
D H
Sbjct: 162 DVHH 165
>gi|343517076|ref|ZP_08754091.1| histone deacetylase/AcuC/AphA family protein [Vibrio sp. N418]
gi|342794575|gb|EGU30338.1| histone deacetylase/AcuC/AphA family protein [Vibrio sp. N418]
Length = 305
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 137/294 (46%), Gaps = 20/294 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y+ L + H + K++ L H ++ ++ + + +P+ +++
Sbjct: 3 PVIYHPIYSQ--LSLPEGHRYPIDKYR-----LLYHALTDKMQGEWANRFMVFQPKPLTQ 55
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGF 229
+ H Y+ +L ++ P V + + + + GGT
Sbjct: 56 ATISQYHCSDYIDAL--------VNGRLPAVKMRRIGFPWSEALIERTFTSAGGTWLTTQ 107
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LA+ +G +I++ GG+HHA G GFC D+ L K + I +IVD D H G+G
Sbjct: 108 LAIEQGIAIHLSGGYHHAHYDFGSGFCLINDLVLSAKQALTLEKIDRVLIVDSDVHHGDG 167
Query: 290 YEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
++ RI + C + K + I A T+D +LE + +E ++ +
Sbjct: 168 TATMCSDDERIITLSFHCDKNFPARKPSSDIDIGFARETQDNEFLEHFYSVVETTINLYR 227
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
PD+I+Y+AG D+ +D LG IS QG+ +RD + A++R +PI + GGY
Sbjct: 228 PDVIIYDAGVDIHQDDELGYFNISTQGLYQRDRFILALAQQRNIPIACVVGGGY 281
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LA+ +G +I++ GG+HHA G GFC D+ L K + I +IVD
Sbjct: 101 GTWLTTQLAIEQGIAIHLSGGYHHAHYDFGSGFCLINDLVLSAKQALTLEKIDRVLIVDS 160
Query: 64 DAHQ 67
D H
Sbjct: 161 DVHH 164
>gi|344202956|ref|YP_004788099.1| histone deacetylase [Muricauda ruestringensis DSM 13258]
gi|343954878|gb|AEM70677.1| Histone deacetylase [Muricauda ruestringensis DSM 13258]
Length = 300
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 118/267 (44%), Gaps = 12/267 (4%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQ 210
L+ T+ N EP + + AH E Y K L + + +A+ ++ P
Sbjct: 32 LIHEGTCTEHNFFEPGLPEDHHIFAAHDEVYFKDLVDLNLSKSAVRKI----GFP--LSD 85
Query: 211 KCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQ 270
+ LR R GT++ AL G S+NI GG HHA +G FC D ++ + L
Sbjct: 86 ELVLRE-RIIADGTIKGCDFALEHGISMNIAGGTHHAYSDRGEAFCMLNDQAIGARYLLN 144
Query: 271 SKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTED 327
++ +IVDLD HQGNG + F + +F KE I L T D
Sbjct: 145 NELAKKILIVDLDVHQGNGTAEIFKTDHSVFTFSMHGNGNYPFKKEISDLDIPLEKGTTD 204
Query: 328 QHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE 387
Q YL ++ L L PD I Y G DVL +D LG L+++ +G RD V +
Sbjct: 205 QEYLSLLKNTLPELLEQVQPDFIFYLCGVDVLESDKLGTLSMTLEGCKERDLFVLQTCYD 264
Query: 388 RRVPIVMLTSGGYLKQTARIIADSILN 414
++P+ GGY +II D+ N
Sbjct: 265 AKIPVQCSMGGGY-SPDIKIIVDAHAN 290
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++ AL G S+NI GG HHA +G FC D ++ + L ++ +IVDL
Sbjct: 97 GTIKGCDFALEHGISMNIAGGTHHAYSDRGEAFCMLNDQAIGARYLLNNELAKKILIVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|237801473|ref|ZP_04589934.1| histone deacetylase family protein [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331024332|gb|EGI04389.1| histone deacetylase family protein [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 307
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 142/296 (47%), Gaps = 22/296 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y +Y+ F E P D ++ + +YLV++ + +I P
Sbjct: 4 PLIYHDDYSP-AFPPEHRFPMDK----------FRLLRDYLVDSGLTSDVQLIRPDICPA 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ L +AH Y+ S S +++ E + +P + + R +R VGG+L +A
Sbjct: 53 DILALAHDPSYI-SRYLSGDLS--REDQRRLGLP--WSEALARRTVRA-VGGSLLTADMA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L+ G + ++ GG HHA GFC + D++++ + L QS + +I D D HQG+G
Sbjct: 107 LKHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQGDGTA 166
Query: 292 KDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ + +T I + K A + + I L D YL ++ L L + P
Sbjct: 167 R-ILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDAEYLNVVDDLLNYLLPFYKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
D+++Y+AG DV +D LG L ++ QG+ RRDE V R +P++ + GGY K
Sbjct: 226 DLVLYDAGVDVHKDDALGYLQLTDQGVARRDEAVMRHCLGRDIPVMGVIGGGYSKD 281
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L +AL+ G + ++ GG HHA GFC + D++++ + L QS + +I D
Sbjct: 98 GSLLTADMALKHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|257060373|ref|YP_003138261.1| histone deacetylase [Cyanothece sp. PCC 8802]
gi|256590539|gb|ACV01426.1| Histone deacetylase [Cyanothece sp. PCC 8802]
Length = 305
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 140/303 (46%), Gaps = 26/303 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY P+Y + H F K++ ++ L + + E K NI P+
Sbjct: 4 PIVYHPQY---VAPIPDEHRFPMLKFRLLYELLLS---DSIAEPK-----NIYTPEFPEL 52
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAG 228
+ + HT +Y+ + + + +V + + +P VQ+ + VGGT+
Sbjct: 53 GLIELVHTAEYINAYCQGTLDVKSQRRI----GLPWSQELVQRTLIA-----VGGTILTA 103
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
LAL+ G + N GG HHA G GFC + D+++ ++L Q + +IVDLD HQG+
Sbjct: 104 KLALQYGLASNTAGGTHHAFPNYGSGFCIFNDLAIASRVLQQLGLVKKVLIVDLDVHQGD 163
Query: 289 GYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
G F N+ +F S K+ + L +D YL+ + L L
Sbjct: 164 GTAVIFENDPTVFTFSLHCESNFPAKKQQSDLDVPLPEGLDDDGYLQVLAQYLPDLLSHV 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PD+++Y+AG D ++D LG LA++ +G+ RR+ V P+ + GGY K
Sbjct: 224 KPDLVLYDAGVDTHVSDRLGKLALTDRGLYRREMQVLSTCVAAGYPVASVIGGGYTKDLK 283
Query: 406 RII 408
+++
Sbjct: 284 KLV 286
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL+ G + N GG HHA G GFC + D+++ ++L Q + +IVDL
Sbjct: 98 GTILTAKLALQYGLASNTAGGTHHAFPNYGSGFCIFNDLAIASRVLQQLGLVKKVLIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|260060958|ref|YP_003194038.1| Histone deacetylase superfamily protein [Robiginitalea biformata
HTCC2501]
gi|88785090|gb|EAR16259.1| Histone deacetylase superfamily protein [Robiginitalea biformata
HTCC2501]
Length = 300
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 88/189 (46%), Gaps = 3/189 (1%)
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
GT+ AL G S+NI GG HHA +G FC D ++ L + +++DL
Sbjct: 97 GTIRCCHYALENGVSMNIAGGTHHAYRDRGEAFCMLNDQAIGACHLLANNLAERILMLDL 156
Query: 283 DAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLE 339
D HQGNG F E R+F S KE + LA T D YL +E LE
Sbjct: 157 DVHQGNGTAAIFREEPRVFTYSMHGQSNYPFRKEVSDWDVPLAKQTGDTEYLTTLETHLE 216
Query: 340 RSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGG 399
PD + Y G DVL D LG LA++P+G +RD +VF R +P+ GG
Sbjct: 217 NLYAQVRPDFVFYLCGVDVLATDKLGTLALTPEGCRQRDAMVFRWCRSHGLPVQCSMGGG 276
Query: 400 YLKQTARII 408
Y Q I+
Sbjct: 277 YSPQIRTIV 285
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ AL G S+NI GG HHA +G FC D ++ L + +++DL
Sbjct: 97 GTIRCCHYALENGVSMNIAGGTHHAYRDRGEAFCMLNDQAIGACHLLANNLAERILMLDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|262277700|ref|ZP_06055493.1| histone deacetylase family protein [alpha proteobacterium HIMB114]
gi|262224803|gb|EEY75262.1| histone deacetylase family protein [alpha proteobacterium HIMB114]
Length = 300
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/297 (29%), Positives = 136/297 (45%), Gaps = 29/297 (9%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
PI+ P+Y ++ H F KK+ + L K T N EP EVS
Sbjct: 2 LPIINHPDY---VAQIGDDHRFPIKKFGELIKLLRK--------KNIATTYNTFEPDEVS 50
Query: 171 EEQLLIAHTEKYLKSLK-WSFNVAAISEVC-PLVAVPNYFVQKCYLRPMRYHVGGTLEAG 228
LL H+E+Y+ + S + I ++ PLV R GGT+ A
Sbjct: 51 VPTLLNVHSEEYINKINNLSLDKDEIRKLGFPLVT--------SVRRRSFVATGGTVLAS 102
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
LA++ + N GG HHA +G G+C + D+++ L + +I+DLD HQG+
Sbjct: 103 KLAVKHKLACNTAGGSHHAFSNQGNGYCVFNDVAVATSYLKKKYKYKKILIIDLDVHQGD 162
Query: 289 GYEKDFMNETRIFIMETCITSK-----AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
G K F ++ +F + I SK K+ IEL +D+ YL + L++ +
Sbjct: 163 GTAKIFESDDSVFTV--SIHSKKNYPSKKQKSNIDIELEDGIKDEEYLNVVNQLLQK-IE 219
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
F D + Y AG DV D LG L I+ GI +R+ELV ++ +P+ + GGY
Sbjct: 220 DFQFDFVFYIAGVDVHFEDRLGKLNITETGIRKREELVINNFFKKNIPLCGVLGGGY 276
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LA++ + N GG HHA +G G+C + D+++ L + +I+DL
Sbjct: 97 GTVLASKLAVKHKLACNTAGGSHHAFSNQGNGYCVFNDVAVATSYLKKKYKYKKILIIDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|411119985|ref|ZP_11392361.1| deacetylase, histone deacetylase/acetoin utilization protein
[Oscillatoriales cyanobacterium JSC-12]
gi|410710141|gb|EKQ67652.1| deacetylase, histone deacetylase/acetoin utilization protein
[Oscillatoriales cyanobacterium JSC-12]
Length = 305
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 129/292 (44%), Gaps = 20/292 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY Y V L H F K++ ++ L E +Q +I P+ E
Sbjct: 4 PLVYHSNYVV---PLPAGHRFPMPKFRMLYELLLAD------EVAHPSQFHI--PERPPE 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ + H +Y+++ A L P + C VGGT+ LA
Sbjct: 53 AWIELVHIPEYVRAYCEGTLDAKAQRRIGLPWSPELVNRTCVA------VGGTILTAKLA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G + N GG HHA + G GFC + D+++ ++L Q + +IVDLD HQG+G
Sbjct: 107 LECGIACNTAGGTHHAFPSYGSGFCIFNDMAIAARVLQQLGLVQQVLIVDLDVHQGDGTA 166
Query: 292 KDFMNETRIFIMET-CITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
F ++ +F C + K+ + L ED YL+ ++ L L PD
Sbjct: 167 WIFRDDPTVFTFSMHCEVNFPGTKQQSDLDVPLPEGMEDDEYLQTLDTYLPDLLSQVKPD 226
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
+++Y+AG D + D LG LA++ G+ RR+ V R P+ + GGY
Sbjct: 227 LVIYDAGVDAHMGDRLGKLALTDSGLFRREMQVLTTCLVRGYPVACVIGGGY 278
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G + N GG HHA + G GFC + D+++ ++L Q + +IVDL
Sbjct: 98 GTILTAKLALECGIACNTAGGTHHAFPSYGSGFCIFNDMAIAARVLQQLGLVQQVLIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|338530056|ref|YP_004663390.1| histone deacetylase family protein [Myxococcus fulvus HW-1]
gi|337256152|gb|AEI62312.1| histone deacetylase family protein [Myxococcus fulvus HW-1]
Length = 299
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 118/267 (44%), Gaps = 9/267 (3%)
Query: 145 WKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAV 204
++ + L+ + +++ E E L HT +YL +L A
Sbjct: 24 YRLLREALLARGVLPPESLTESTPSPREDLARVHTPRYLDALFQGTLTEAEQRRLGFPWS 83
Query: 205 PNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLL 264
P +R V GT++A AL+ G N+ GG HH G GFC + DI++
Sbjct: 84 PEL------VRRFAAAVAGTVDAARAALQDGIGGNLSGGTHHGFPDHGEGFCVFNDIAVA 137
Query: 265 VKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIEL 321
++ L S+ I A++VDLD HQGNG F + +F + K+ + + L
Sbjct: 138 IRALQASRDIRRAVVVDLDVHQGNGTAAVFAGDDSVFTFSMHGENNFPFRKQPSQLDVGL 197
Query: 322 APYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV 381
T D YL+ + L L I+ Y AG D L D LG L+++ G+ RD LV
Sbjct: 198 PDGTGDAAYLDALALYLPEVLDRAGACILFYQAGVDPLTEDALGRLSLTHAGLRARDRLV 257
Query: 382 FMKARERRVPIVMLTSGGYLKQTARII 408
AR+R +P V+ GGY K + I
Sbjct: 258 LEAARQRGLPAVLTLGGGYAKPLSATI 284
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++A AL+ G N+ GG HH G GFC + DI++ ++ L S+ I A++VDL
Sbjct: 96 GTVDAARAALQDGIGGNLSGGTHHGFPDHGEGFCVFNDIAVAIRALQASRDIRRAVVVDL 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|334705473|ref|ZP_08521339.1| histone deacetylase/AcuC/AphA family protein [Aeromonas caviae
Ae398]
Length = 298
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 127/301 (42%), Gaps = 27/301 (8%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQD-NIIEPQEVSE 171
I Y P Y+ L + H F K++ +F + I D + + S
Sbjct: 5 IFYHPHYSA--LTLPERHRFPLAKYQALFE-------------RLIALDYPLAQAAPASR 49
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
EQ+ H Y+++ L + + AI + + + + VG TL A
Sbjct: 50 EQIEKVHDAAYVQAALAGTLDEGAIRRL-------GFPWSPLLIERTLHSVGATLAASRH 102
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL +G + I GG+HHA G GFC + D+ + + +IVDLD HQG+G
Sbjct: 103 ALAQGCGLQISGGYHHAHRGFGSGFCLFNDLVIAARTCLDEGLCERVLIVDLDVHQGDGS 162
Query: 291 EKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
I + K A L ED YLE ++ L + R + P
Sbjct: 163 AALCTGSRDIITLSLHGEHNFPHHKPASHLDFPLPSGMEDDAYLETLDQALALAHRLYAP 222
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D I+Y AG DV +D LG L++S G+ +RD +VF A +PI + GGY + ++
Sbjct: 223 DFILYQAGVDVHRDDELGYLSLSDSGVRQRDAMVFDSALRHGLPITAVPGGGYRRDWQQL 282
Query: 408 I 408
I
Sbjct: 283 I 283
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
TL A AL +G + I GG+HHA G GFC + D+ + + +IVDLD
Sbjct: 96 TLAASRHALAQGCGLQISGGYHHAHRGFGSGFCLFNDLVIAARTCLDEGLCERVLIVDLD 155
Query: 65 AHQ 67
HQ
Sbjct: 156 VHQ 158
>gi|332291650|ref|YP_004430259.1| histone deacetylase [Krokinobacter sp. 4H-3-7-5]
gi|332169736|gb|AEE18991.1| Histone deacetylase [Krokinobacter sp. 4H-3-7-5]
Length = 300
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 134/308 (43%), Gaps = 30/308 (9%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PI P H F +EK ++ L K LV T+DN EP EV
Sbjct: 8 PIYKHPLPEGHRFPMEK------------YDLLPKQ----LVYEGTCTEDNFFEPVEVDN 51
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E ++ HT +Y++SLK + + ++ + V + + GT++ A
Sbjct: 52 EHIVRCHTTEYVESLK-ALTIDPRAQRKTGFPLSQELVDRELIITQ-----GTIDGCHYA 105
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G ++NI GG HHA G FC D ++ + L ++ +IVDLD HQGNG
Sbjct: 106 LENGIAMNIAGGTHHAYTDHGEAFCLLNDQAIAARYLQANELAKKILIVDLDVHQGNGTA 165
Query: 292 KDFMNETRIFIMETCITSKA-----KEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
+ F + +F + KA KE I L T D YL+ ++ L ++
Sbjct: 166 EIFTGDDSVFTFS--MHGKANYPFRKEISDLDIALETDTGDAEYLDILKKTLPNLIKEQQ 223
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
PD I Y G D+L +D LG L S +G RD V + ++P+ GGY +
Sbjct: 224 PDFIFYLCGVDILASDKLGKLGCSIEGCKERDRFVLQICHDLKIPVQCSMGGGY-SPDIK 282
Query: 407 IIADSILN 414
+I D+ N
Sbjct: 283 VIIDAHAN 290
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++ AL G ++NI GG HHA G FC D ++ + L ++ +IVDL
Sbjct: 97 GTIDGCHYALENGIAMNIAGGTHHAYTDHGEAFCLLNDQAIAARYLQANELAKKILIVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|218248300|ref|YP_002373671.1| histone deacetylase superfamily protein [Cyanothece sp. PCC 8801]
gi|218168778|gb|ACK67515.1| histone deacetylase superfamily [Cyanothece sp. PCC 8801]
Length = 305
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 140/303 (46%), Gaps = 26/303 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY P+Y + H F K++ ++ L + + E K NI P+
Sbjct: 4 PIVYHPQY---VAPIPDEHRFPMLKFRLLYELLLS---DSIAEPK-----NIYTPEFPEL 52
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAG 228
+ + HT +Y+ + + + +V + + +P VQ+ + VGGT+
Sbjct: 53 GLIELVHTAEYINAYCQGTLDVKSQRRI----GLPWSQELVQRTLIA-----VGGTILTA 103
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
LAL+ G + N GG HHA G GFC + D+++ ++L Q + +IVDLD HQG+
Sbjct: 104 KLALQYGLASNTAGGTHHAFPNYGSGFCIFNDLAIASRVLQQLGLVKKVLIVDLDVHQGD 163
Query: 289 GYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
G F N+ +F S K+ + L +D YL+ + L L
Sbjct: 164 GTAVIFENDPTVFTFSLHCESNFPAKKQQSDLDVPLPEGLDDDGYLQILAQYLPDLLSHV 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PD+++Y+AG D ++D LG LA++ +G+ RR+ V P+ + GGY K
Sbjct: 224 KPDLVLYDAGVDTHVSDRLGKLALTDRGLYRREMQVLSTCVAAGYPVASVIGGGYTKDLK 283
Query: 406 RII 408
+++
Sbjct: 284 KLV 286
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL+ G + N GG HHA G GFC + D+++ ++L Q + +IVDL
Sbjct: 98 GTILTAKLALQYGLASNTAGGTHHAFPNYGSGFCIFNDLAIASRVLQQLGLVKKVLIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|241763690|ref|ZP_04761739.1| histone deacetylase superfamily [Acidovorax delafieldii 2AN]
gi|241367079|gb|EER61453.1| histone deacetylase superfamily [Acidovorax delafieldii 2AN]
Length = 311
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 120/259 (46%), Gaps = 22/259 (8%)
Query: 165 EPQEVSEEQLLIAHTEKYLKSLK-WSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGG 223
E S+ +L +AH Y++++ + AA E+ + R VG
Sbjct: 42 EAPAASDGELALAHVPSYIQAVATGTLAPAAQREI-------GFPWSPAMAERARRSVGA 94
Query: 224 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS-------T 276
T+ A ALR G + N+ GG HHA +G GFC + DI++ +L+ ++ +
Sbjct: 95 TIAACRAALREGVAGNLAGGTHHAYADRGSGFCVFNDIAVAARLMQAERARAGVKAQPLC 154
Query: 277 AMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEK 333
++DLD HQGNG F + +F + KE +EL D YL
Sbjct: 155 VAVIDLDVHQGNGTAHLFQGDDSVFTLSLHGARNFPFRKEEGDLDVELPDGCADDEYLHA 214
Query: 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIV 393
+E L+ + F P +++Y AG D + D LG LA+S G+ RD VF A +R VP+
Sbjct: 215 LEQALDALDQRFAPGLVLYLAGADPHVGDRLGRLALSHDGLEARDRRVFDWAWQRGVPLA 274
Query: 394 MLTSGGYLKQTARIIADSI 412
+GGY R +AD++
Sbjct: 275 FTMAGGY----GRDMADTL 289
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 22/112 (19%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS-------T 57
T+ A ALR G + N+ GG HHA +G GFC + DI++ +L+ ++ +
Sbjct: 95 TIAACRAALREGVAGNLAGGTHHAYADRGSGFCVFNDIAVAARLMQAERARAGVKAQPLC 154
Query: 58 AMIVDLDAHQFSDYYFPSAH-----------SIKRKRKVEFLKERKALEDEI 98
++DLD HQ + +AH S+ R F KE L+ E+
Sbjct: 155 VAVIDLDVHQGNG----TAHLFQGDDSVFTLSLHGARNFPFRKEEGDLDVEL 202
>gi|345867518|ref|ZP_08819529.1| histone deacetylase domain protein [Bizionia argentinensis JUB59]
gi|344048186|gb|EGV43799.1| histone deacetylase domain protein [Bizionia argentinensis JUB59]
Length = 300
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 115/253 (45%), Gaps = 9/253 (3%)
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
++ N EP + +L HT +Y L N+ ++ + P + ++
Sbjct: 39 SEANFFEPVIPDDRYILQVHTAEYYNHL---LNLTLDAKAARKIGFP---LSAELIKREV 92
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
GT++A AL G ++NI GG HHA +G GFC D ++ + L + + +
Sbjct: 93 IIADGTIKASKFALENGIAMNIAGGTHHAYSNRGEGFCLLNDQAIAARYLQKHQLAEKIL 152
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIE 335
IVDLD HQGNG + F N+ +F S KE I L + DQ YL ++
Sbjct: 153 IVDLDVHQGNGTAEIFQNDPSVFTFSMHGKSNYPFKKEESDLDIALETDSNDQEYLSILK 212
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
L + + S PD I Y G DV+ D LG LA++ +G RD V ++ +P++
Sbjct: 213 ETLPKLIASEKPDFIYYLCGVDVMATDKLGKLALTLEGCKERDRFVLQTCKDLGIPVMCS 272
Query: 396 TSGGYLKQTARII 408
GGY II
Sbjct: 273 MGGGYSPDIKIII 285
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++A AL G ++NI GG HHA +G GFC D ++ + L + + +IVDL
Sbjct: 97 GTIKASKFALENGIAMNIAGGTHHAYSNRGEGFCLLNDQAIAARYLQKHQLAEKILIVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|343506193|ref|ZP_08743701.1| histone deacetylase/AcuC/AphA family protein [Vibrio ichthyoenteri
ATCC 700023]
gi|342803497|gb|EGU38848.1| histone deacetylase/AcuC/AphA family protein [Vibrio ichthyoenteri
ATCC 700023]
Length = 312
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 137/294 (46%), Gaps = 13/294 (4%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWK--HIFNYLVEAKFITQDNIIEPQEV 169
P++Y P Y+ L H + K++ +F + + H + AK++ +P +
Sbjct: 3 PLIYHPIYSQ--LTLPAKHRYPINKYQLLFQAVEQKLHATSIASPAKWLNTFQFFKPCPL 60
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
S E + H Y+ +L AA + P + ++ R + GGT
Sbjct: 61 SPETVSRHHCPDYIDALLSGQLPAAKMR---RIGFP--WSEQLIERTLT-SAGGTWLTTQ 114
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL G +I++ GG+HHA G GFC D+++ K + +I+D D H G+G
Sbjct: 115 LALDYGVAIHLSGGYHHAHYDFGTGFCLINDLAMSAKQALSMDHVDRVLIIDSDVHHGDG 174
Query: 290 YEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
++ RI + C + K I LA T D +L+ + +E ++ +
Sbjct: 175 TATMCADDERIITVSFHCDKNFPARKPHSDVDIALAKETGDAEFLDHFYSVVETAVNVYQ 234
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
PD+I+Y+AG D+ +D LG +S QGI +RD + AR+R++PI + GGY
Sbjct: 235 PDLILYDAGVDIHCDDELGYFNVSTQGIYQRDYFILQLARQRKIPIACVIGGGY 288
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LAL G +I++ GG+HHA G GFC D+++ K + +I+D
Sbjct: 108 GTWLTTQLALDYGVAIHLSGGYHHAHYDFGTGFCLINDLAMSAKQALSMDHVDRVLIIDS 167
Query: 64 DAHQ 67
D H
Sbjct: 168 DVHH 171
>gi|381203585|ref|ZP_09910691.1| histone deacetylase [Sphingobium yanoikuyae XLDN2-5]
Length = 300
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 103/217 (47%), Gaps = 13/217 (5%)
Query: 195 ISEVCPLVAVP------NYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHAS 248
+ EV L P + V + +R GGT A LAL G++ N GG HHA
Sbjct: 61 VEEVLALAVPPEKERRIGFPVTERVMRRALLSPGGTWLAAKLALVHGYAANAAGGSHHAL 120
Query: 249 ETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIM----- 303
G G+C + D+++ L ++ +I+DLD HQG+G +F +
Sbjct: 121 ADSGAGYCVFNDLAIAANRLIAEGDVNRILILDLDVHQGDGTASLMAGRGDVFTLSIHAE 180
Query: 304 ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDP 363
+ KA+ + + LA T D YL + L R L F PD+I+Y AG D ++D
Sbjct: 181 KNFPVRKARSTLD--LGLADDTGDADYLAALGEMLPRVLNDFVPDLILYQAGVDGHVDDR 238
Query: 364 LGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
LG LA+S +G+ RD LV +A R +P+ GGY
Sbjct: 239 LGRLALSDEGLAARDGLVMRQALARAIPVASCMGGGY 275
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A LAL G++ N GG HHA G G+C + D+++ L ++ +I+DL
Sbjct: 95 GTWLAAKLALVHGYAANAAGGSHHALADSGAGYCVFNDLAIAANRLIAEGDVNRILILDL 154
Query: 64 DAHQ 67
D HQ
Sbjct: 155 DVHQ 158
>gi|254293275|ref|YP_003059298.1| histone deacetylase [Hirschia baltica ATCC 49814]
gi|254041806|gb|ACT58601.1| Histone deacetylase [Hirschia baltica ATCC 49814]
Length = 300
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 134/282 (47%), Gaps = 25/282 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIV+ P Y+ + H F +K+ + L +EA ++ P+ S
Sbjct: 3 PIVHHPLYDAS--SVSDKHRFPMRKYSLLPLKL--------MEAGLAYPNSFHLPELASA 52
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCP--LVAVPNYFVQKCYLRPMRYHVGGTLEAG 228
E+L AH+ +Y+ + L + + AA ++ + V N R G+L AG
Sbjct: 53 EELSAAHSVQYVAAVLSGNLDRAAQKKLGFEWSIDVSNR---------ARASAAGSLLAG 103
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
LAL+ G + N GG HHA G GFC + D+++ V + +K + +IVDLD H G+
Sbjct: 104 KLALKHGAAANTAGGSHHAGYDYGAGFCVFNDVAVAVLNMLNAKLVERVLIVDLDVHHGD 163
Query: 289 GYEKDFMNETRIFIMET-CITSKAKEAIRCRIE--LAPYTEDQHYLEKIEAGLERSLRSF 345
G + F N+ R+F C + +E ++ LA ED+ YL ++ L +L
Sbjct: 164 GSARIFANDQRVFTFSMHCEDNWPREKPPSDLDVGLAKGLEDEAYLAALKWSLCEALERS 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE 387
P I+ YNAG D + D LGLL +S G+ RD+ V R+
Sbjct: 224 SPQIVFYNAGVDPHIEDRLGLLNLSDAGLQARDKWVANTCRD 265
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L AG LAL+ G + N GG HHA G GFC + D+++ V + +K + +IVDL
Sbjct: 98 GSLLAGKLALKHGAAANTAGGSHHAGYDYGAGFCVFNDVAVAVLNMLNAKLVERVLIVDL 157
Query: 64 DAHQ 67
D H
Sbjct: 158 DVHH 161
>gi|334343955|ref|YP_004552507.1| histone deacetylase [Sphingobium chlorophenolicum L-1]
gi|334100577|gb|AEG48001.1| Histone deacetylase [Sphingobium chlorophenolicum L-1]
Length = 305
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 118/264 (44%), Gaps = 16/264 (6%)
Query: 162 NIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHV 221
I EP + + H Y+ + + V E V +++ L P
Sbjct: 40 TIHEPAPMPRPWIEAVHDPAYVDQVA-TMTVPRDKERRIGFPVTERVMRRSMLSP----- 93
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 281
GGT A LA+R G++ N GG HHA G G+C + D+++ L +I+D
Sbjct: 94 GGTWLAARLAMRHGYAANAAGGSHHALADTGAGYCVFNDLAIAANRLIAEGEARRILILD 153
Query: 282 LDAHQGNGYEKDFMNETRIFIMETCITS-----KAKEAIRCRIELAPYTEDQHYLEKIEA 336
LD HQG+G IF + S KA+ ++ I L T D Y++ +
Sbjct: 154 LDVHQGDGTAVLTGGRDDIFTLSIHAESNFPVRKARSSL--DIGLRDGTGDDAYMDALMR 211
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
L L F PD+I+Y AG D +D LG LA+S +G+ RRD V AR R +P+
Sbjct: 212 VLPPVLDDFRPDLILYQAGVDPHADDRLGRLALSDEGLDRRDRRVMRAARSRGIPLASTM 271
Query: 397 SGGYLKQ---TARIIADSILNLAD 417
GGY AR AD ++ LAD
Sbjct: 272 GGGYGADRMAIARRHADCMIRLAD 295
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A LA+R G++ N GG HHA G G+C + D+++ L +I+DL
Sbjct: 95 GTWLAARLAMRHGYAANAAGGSHHALADTGAGYCVFNDLAIAANRLIAEGEARRILILDL 154
Query: 64 DAHQ 67
D HQ
Sbjct: 155 DVHQ 158
>gi|386361161|ref|YP_006059406.1| deacetylase [Thermus thermophilus JL-18]
gi|383510188|gb|AFH39620.1| deacetylase, histone deacetylase/acetoin utilization protein
[Thermus thermophilus JL-18]
Length = 294
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 121/242 (50%), Gaps = 11/242 (4%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
++ EV E L +AH YL L F E + +P + LR + G
Sbjct: 37 VLPAPEVPREALFLAHEASYLGKL---FGEGLTREESLRLGLP---FSQALLRRALHAAG 90
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST-AMIVD 281
GTL A AL G +N+ GG HHA + G+ + D+++ + L + S ++VD
Sbjct: 91 GTLAAALDALEAGLGLNLAGGTHHAFPGRAEGYSLFNDVAVAILWLRAKEGFSGRVLVVD 150
Query: 282 LDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGL 338
LDAHQGNG F + +F + KE + L T D+ YL +E L
Sbjct: 151 LDAHQGNGTAFFFQEDPSVFTLSLHGERNYPLKKERSDLDVGLPDGTGDEAYLWALEEAL 210
Query: 339 ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSG 398
E++ R+F PD++ YNAG DVL D G LA+SP+G+ RRDE VF + VP+V++ G
Sbjct: 211 EKA-RAFRPDLVFYNAGVDVLRGDRFGRLALSPEGVRRRDERVFRFVKALGVPLVVVMGG 269
Query: 399 GY 400
GY
Sbjct: 270 GY 271
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST-AMIVDLDAHQFSDYYF--- 73
+N+ GG HHA + G+ + D+++ + L + S ++VDLDAHQ + F
Sbjct: 105 GLNLAGGTHHAFPGRAEGYSLFNDVAVAILWLRAKEGFSGRVLVVDLDAHQGNGTAFFFQ 164
Query: 74 --PSAH--SIKRKRKVEFLKERKALE 95
PS S+ +R KER L+
Sbjct: 165 EDPSVFTLSLHGERNYPLKKERSDLD 190
>gi|421610754|ref|ZP_16051920.1| histone deacetylase/AcuC/AphA family protein [Rhodopirellula
baltica SH28]
gi|408498538|gb|EKK03031.1| histone deacetylase/AcuC/AphA family protein [Rhodopirellula
baltica SH28]
Length = 305
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 145/318 (45%), Gaps = 30/318 (9%)
Query: 119 YNVHF-FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIA 177
Y HF L + H F K++ + + VE++ D +I PQ ++EQLL
Sbjct: 5 YTDHFDLPLPEGHRFPMSKYRLLRQRV--------VESEHHRDDTLIVPQAATDEQLLHC 56
Query: 178 HTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWS 237
HT Y++ ++ + + + P + K R R G T+ A A+ G S
Sbjct: 57 HTPDYVQRVQ---SGTLTKQEIRRIGFP--WSAKMVERSRRS-TGATISAARAAIDEGIS 110
Query: 238 INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNE 297
N+ GG HHA +G G+C + D ++ ++ L I A I+DLD HQGNG +
Sbjct: 111 ANLAGGTHHAFAGEGEGYCVFNDAAVAIRTLQSEGLIQRAAIIDLDVHQGNGTASILKDV 170
Query: 298 TRIFIMETCITSKAKE-AIR-----CRIELAPYTEDQHY---LEKIEAGLER-SLRSFCP 347
+F TC K +R I L T D Y L + A LE+ S
Sbjct: 171 PSVF---TCSVHGVKNFPLRKMPSDLDISLPDGTGDDDYCDALRSVLAKLEKHQSESGQF 227
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D+++Y AG D ND LG L+++ G+ RRDELV R +P+ + +GGY + I
Sbjct: 228 DLVIYLAGADPYKNDRLGRLSLTMDGLRRRDELVLQWCRHNDLPVAIAMAGGYSVEVKEI 287
Query: 408 --IADSILNLADLGLISR 423
I L++A + +SR
Sbjct: 288 VDIHSQTLHIAKVWSLSR 305
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
T+ A A+ G S N+ GG HHA +G G+C + D ++ ++ L I A I+DL
Sbjct: 96 ATISAARAAIDEGISANLAGGTHHAFAGEGEGYCVFNDAAVAIRTLQSEGLIQRAAIIDL 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|428207541|ref|YP_007091894.1| histone deacetylase [Chroococcidiopsis thermalis PCC 7203]
gi|428009462|gb|AFY88025.1| Histone deacetylase [Chroococcidiopsis thermalis PCC 7203]
Length = 305
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 130/300 (43%), Gaps = 20/300 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P+Y V L H F K++ ++ L Y + + P+ +
Sbjct: 4 PLVYHPDYVV---PLPDTHRFPMPKFQLLYELLIADGVAYPEQFQI--------PERPPQ 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ + H +Y+++ A L P + C VGGT+ LA
Sbjct: 53 AWIELVHLPEYVQAYCTGTLDAKAQRRIGLPWSPALANRTCVA------VGGTVLTAKLA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G + N GG HHA + G GFC + D+++ ++L + + +IVDLD HQG+G
Sbjct: 107 LECGLACNTAGGTHHAFPSYGSGFCIFNDLAIATRVLQELNLVRKVLIVDLDVHQGDGTA 166
Query: 292 KDFMNETRIFI--METCIT-SKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
F N+ +F M I K+ + L ED YL+ + L L PD
Sbjct: 167 FIFQNDPSVFTFSMHCEINFPGTKQKSDLDVPLPEGMEDDEYLQTLAQYLPDLLSRIQPD 226
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
+++Y+AG D + D LG LA++ G+ RRD V P+ + GGY + ++
Sbjct: 227 LVLYDAGVDPHIGDRLGKLALTNTGLFRRDMQVLSTCVAAGYPVACVIGGGYAEDMTSLV 286
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G + N GG HHA + G GFC + D+++ ++L + + +IVDL
Sbjct: 98 GTVLTAKLALECGLACNTAGGTHHAFPSYGSGFCIFNDLAIATRVLQELNLVRKVLIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|170719842|ref|YP_001747530.1| histone deacetylase superfamily protein [Pseudomonas putida W619]
gi|169757845|gb|ACA71161.1| histone deacetylase superfamily [Pseudomonas putida W619]
Length = 304
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 140/298 (46%), Gaps = 22/298 (7%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F E P D ++ + ++LVE+ T ++ PQ
Sbjct: 2 PLPLIYHDDYSPEF-PPEHRFPMDK----------FRLLRDHLVESGLTTDQALLRPQIC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
+ L +AH Y++ + E + +P + + R +R VGG+L A
Sbjct: 51 PNDILALAHDRDYIERY---MHGELSREDQRRLGLP--WSEALARRTVRA-VGGSLLAAE 104
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
+AL+ G + ++ GG HHA GFC + D++++ + L ++ + +I D D HQG+G
Sbjct: 105 MALQHGLACHLAGGTHHAHFDHPAGFCIFNDLAVISRYLLEAGRVHRVLIFDCDVHQGDG 164
Query: 290 YEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSF 345
+ + +T I + + A + I L D YL+ +E L L +
Sbjct: 165 TAR-ILQDTPDAITVSLHCEQNFPARKAHSDWDIPLPRGMGDAAYLKVVEDALNYLLPLY 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD+++Y+AG DV +D LG L ++ G+ RDE V R +P+V + GGY K
Sbjct: 224 QPDLVLYDAGVDVHKDDALGYLQLTDAGLAARDEHVMRHCLGRDIPVVGVIGGGYSKD 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A +AL+ G + ++ GG HHA GFC + D++++ + L ++ + +I D
Sbjct: 98 GSLLAAEMALQHGLACHLAGGTHHAHFDHPAGFCIFNDLAVISRYLLEAGRVHRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|339492852|ref|YP_004713145.1| histone deacetylase family protein [Pseudomonas stutzeri ATCC 17588
= LMG 11199]
gi|338800224|gb|AEJ04056.1| histone deacetylase family protein [Pseudomonas stutzeri ATCC 17588
= LMG 11199]
Length = 306
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 138/304 (45%), Gaps = 34/304 (11%)
Query: 112 PIVYRPEYNV-----HFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEP 166
P+VY +Y+ H F +EK ++ + ++LV T ++ P
Sbjct: 4 PLVYHDDYSPPLPPGHRFPMEK----------------FRLLRDHLVTLGMTTDAALLRP 47
Query: 167 QEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLE 226
S + L +AH Y+ ++ E+ L +P + + R +R VGG+L
Sbjct: 48 SLCSRDILTLAHDADYVA--RYCSGEMGRDELRRL-GLP--WSPELAQRTVRA-VGGSLL 101
Query: 227 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 286
A AL+ G + ++ GG HHA GFC + D++++ L +S + +I D D HQ
Sbjct: 102 AAEQALQHGLACHLAGGTHHAHRDHASGFCIFNDLAVIALYLLESGRVGRVLIFDCDVHQ 161
Query: 287 GNGYEKDFMN-----ETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERS 341
G+G + N + + T KA I L P D+ YL+ + L
Sbjct: 162 GDGTARILENVPDAVTVSLHCEKNFPTRKAHS--DWDIPLPPGMGDEAYLQVVHDTLNYL 219
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYL 401
L + PD+++Y+AG DV +D LGLL+++ G+ RD V R +P+V L GGY
Sbjct: 220 LPIYQPDLVLYDAGVDVHRDDALGLLSLTDAGLAARDSAVLDHCLGRDIPVVGLIGGGYD 279
Query: 402 KQTA 405
K A
Sbjct: 280 KDRA 283
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL+ G + ++ GG HHA GFC + D++++ L +S + +I D
Sbjct: 98 GSLLAAEQALQHGLACHLAGGTHHAHRDHASGFCIFNDLAVIALYLLESGRVGRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|254441358|ref|ZP_05054851.1| Histone deacetylase family, putative [Octadecabacter antarcticus
307]
gi|198251436|gb|EDY75751.1| Histone deacetylase family, putative [Octadecabacter antarcticus
307]
Length = 301
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 135/302 (44%), Gaps = 26/302 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY Y++ + H F+ K+ + +YL + + F Q + I V
Sbjct: 5 PVVYNDFYDI---CVPLTHRFNGTKFSKLVHYLQR--------SDFSNQLDFIHSSPVRY 53
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGF 229
E + AH Y++ + A + + +P +++ +L + GT
Sbjct: 54 EDIKRAHANDYVQRVATG---ALLRNEVRQINLPINTQLIKRSFLA-----LNGTYTTAL 105
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
AL G + + GG HHA + G GFC + D++ L + + + +I+DLD HQG+G
Sbjct: 106 KALETGVACHAAGGTHHAHYSHGSGFCVFNDLAFTALNLIEHGMVESVLILDLDVHQGDG 165
Query: 290 YEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
+ I+ E + ++ R + L + ED YL+++ L R F
Sbjct: 166 TIDICHGKRGIYTCSLHCEQNFPFQKRQGTR-DVPLDCHLEDNAYLDQLHRTLADISRDF 224
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
P +++Y+AG DV L D LG L ++ +G+ +RD +V + +PI + GGY A
Sbjct: 225 TPQLVLYDAGVDVFLGDQLGNLDLTLEGVFKRDCIVLEHFKNCNIPIATVIGGGYSPSDA 284
Query: 406 RI 407
I
Sbjct: 285 DI 286
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT AL G + + GG HHA + G GFC + D++ L + + + +I+DL
Sbjct: 99 GTYTTALKALETGVACHAAGGTHHAHYSHGSGFCVFNDLAFTALNLIEHGMVESVLILDL 158
Query: 64 DAHQ 67
D HQ
Sbjct: 159 DVHQ 162
>gi|365096461|ref|ZP_09331053.1| histone deacetylase [Acidovorax sp. NO-1]
gi|363413841|gb|EHL21030.1| histone deacetylase [Acidovorax sp. NO-1]
Length = 314
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 131/296 (44%), Gaps = 30/296 (10%)
Query: 119 YNVHF-FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIA 177
Y HF L + H F K++ + + + +H+ ++ + P ++ +L +
Sbjct: 5 YADHFVLPLPEAHRFPMAKYRLLRDRIAQHLPGVSLQ--------VATP--ATDRELALV 54
Query: 178 HTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWS 237
HT Y+ + +A + P + + + R+ VG T+ A +AL G +
Sbjct: 55 HTSHYIDA------IADGTLAAPAQREIGFPWSEAMVERARHSVGATVAASKVALLEGVA 108
Query: 238 INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA----------MIVDLDAHQG 287
N+ GG HHA KG GFC + D+++ +LL + A ++DLD HQG
Sbjct: 109 GNLAGGTHHAYAHKGSGFCVFNDVAVATRLLQAQWAQGAAGGRGSRPLQVAVIDLDVHQG 168
Query: 288 NGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRS 344
NG F + +F + KE +EL D YL+ +E L+ +
Sbjct: 169 NGTAHIFQGDHSVFTVSLHGARNFPFRKEPSDLDVELPDGCTDDDYLQALELALQTLEQR 228
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
F P + Y AG D D LG LA++ G+ RD VF A +RR+P+ +GGY
Sbjct: 229 FAPRFVFYLAGADPHEGDRLGRLAVTHDGLEARDRRVFDWAWQRRIPVAFAMAGGY 284
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA------ 58
T+ A +AL G + N+ GG HHA KG GFC + D+++ +LL + A
Sbjct: 95 TVAASKVALLEGVAGNLAGGTHHAYAHKGSGFCVFNDVAVATRLLQAQWAQGAAGGRGSR 154
Query: 59 ----MIVDLDAHQFSD--YYFPSAHSI-----KRKRKVEFLKERKALEDEI 98
++DLD HQ + + F HS+ R F KE L+ E+
Sbjct: 155 PLQVAVIDLDVHQGNGTAHIFQGDHSVFTVSLHGARNFPFRKEPSDLDVEL 205
>gi|24215622|ref|NP_713103.1| histone deacetylase [Leptospira interrogans serovar Lai str. 56601]
gi|386074823|ref|YP_005989141.1| histone deacetylase [Leptospira interrogans serovar Lai str. IPAV]
gi|24196779|gb|AAN50121.1| histone deacetylase [Leptospira interrogans serovar Lai str. 56601]
gi|353458613|gb|AER03158.1| histone deacetylase [Leptospira interrogans serovar Lai str. IPAV]
Length = 302
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 139/294 (47%), Gaps = 22/294 (7%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
+VY P+YN+ H F ++K++ +++ + + ++K ++ I +P +
Sbjct: 10 LVYHPDYNLDL----GPHVFPARKYQMVYDLVKR-------DSK-LSNLYIYKPDLAKTK 57
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
L + HT+++L +S N+ ++ L + K + VGGT+ + LA
Sbjct: 58 DLSLVHTQEFLDDF-FSLNITERTQYSELP------LTKQIVHSFVLAVGGTILSMELAQ 110
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
+ + +IGGGFHH+ + GFC D ++ KL + + +DLD HQGNG
Sbjct: 111 KYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIASKLYQKEYPDKKILFIDLDLHQGNGNSF 170
Query: 293 DFMNETRIFI--METCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
F N+ +F M KE I L D+ YLE +E L + F PD+I
Sbjct: 171 IFQNDPDVFTFSMHQENLYPKKEKSDLDISLEEGIGDKEYLELLEKSLRKIESDFKPDLI 230
Query: 351 VYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE-RRVPIVMLTSGGYLKQ 403
Y AG D D LG L ++ QG+ +RD++V A +V+L +GGY K
Sbjct: 231 FYIAGADPFEGDSLGDLKLTFQGLRKRDQIVRDFAYSLNDTRVVILPAGGYAKD 284
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ + LA + + +IGGGFHH+ + GFC D ++ KL + + +DL
Sbjct: 101 GTILSMELAQKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIASKLYQKEYPDKKILFIDL 160
Query: 64 DAHQ 67
D HQ
Sbjct: 161 DLHQ 164
>gi|395797814|ref|ZP_10477102.1| histone deacetylase family protein [Pseudomonas sp. Ag1]
gi|395338182|gb|EJF70035.1| histone deacetylase family protein [Pseudomonas sp. Ag1]
Length = 306
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 139/299 (46%), Gaps = 24/299 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F P D + F L H LVE+ ++ P+
Sbjct: 2 PLPLIYHDDYSPEF-------PADHRFPMDKFRLLRDH----LVESGLTRDSQLLRPELC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAG 228
E L +AH Y++ + +S E + +P + + R +R VGG+L A
Sbjct: 51 PAEILALAHEPGYIER----YMSGELSREDQRRLGLP--WSEALARRTVRA-VGGSLLAA 103
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
AL G + ++ GG HHA GFC + D++++ L S ++ +I D D HQG+
Sbjct: 104 EQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDCDVHQGD 163
Query: 289 GYEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRS 344
G + +++T I + K A + + I L D YL+ ++ L L
Sbjct: 164 GTAR-ILHDTPDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLKVVDDALNYLLPL 222
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ QG+ RDE V R +P+V + GGY K
Sbjct: 223 YQPDLVLYDAGVDVHKDDALGYLKLTDQGVAARDESVMRHCLGRDIPVVGVIGGGYSKD 281
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ L S ++ +I D
Sbjct: 98 GSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|386019455|ref|YP_005937479.1| histone deacetylase family protein [Pseudomonas stutzeri DSM 4166]
gi|327479427|gb|AEA82737.1| histone deacetylase family protein [Pseudomonas stutzeri DSM 4166]
Length = 306
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 138/304 (45%), Gaps = 34/304 (11%)
Query: 112 PIVYRPEYNV-----HFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEP 166
P+VY +Y+ H F +EK ++ + ++LV T ++ P
Sbjct: 4 PLVYHDDYSPPLPPGHRFPMEK----------------FRLLRDHLVTLGMTTDAALLRP 47
Query: 167 QEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLE 226
S + L +AH Y+ ++ E+ L +P + + R +R VGG+L
Sbjct: 48 SLCSRDILTLAHDADYVA--RYCSGEMGRDELRRL-GLP--WSPELAQRTVRA-VGGSLL 101
Query: 227 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 286
A AL+ G + ++ GG HHA GFC + D++++ L +S + +I D D HQ
Sbjct: 102 AAEQALQHGLACHLAGGTHHAHRDHASGFCIFNDLAVIALYLLESGRVGRVLIFDCDVHQ 161
Query: 287 GNGYEKDFMN-----ETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERS 341
G+G + N + + T KA I L P D+ YL+ + L
Sbjct: 162 GDGTARILENVPDAVTVSLHCEKNFPTRKADS--DWDIPLPPGMGDEAYLQVVHDTLNYL 219
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYL 401
L + PD+++Y+AG DV +D LGLL+++ G+ RD V R +P+V L GGY
Sbjct: 220 LPIYQPDLVLYDAGVDVHRDDALGLLSLTDAGLAARDSAVLDHCLGRDIPVVGLIGGGYD 279
Query: 402 KQTA 405
K A
Sbjct: 280 KDRA 283
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL+ G + ++ GG HHA GFC + D++++ L +S + +I D
Sbjct: 98 GSLLAAEQALQHGLACHLAGGTHHAHRDHASGFCIFNDLAVIALYLLESGRVGRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|407791878|ref|ZP_11138955.1| histone deacetylase superfamily protein [Gallaecimonas xiamenensis
3-C-1]
gi|407198705|gb|EKE68734.1| histone deacetylase superfamily protein [Gallaecimonas xiamenensis
3-C-1]
Length = 299
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 15/195 (7%)
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
GTL LAL G ++++ GG+HHA +GGGFC + D+++ + L ++ D
Sbjct: 96 GTLLCAELALDHGLALHLSGGYHHAHYAQGGGFCIFNDLAMAAQTLVDQGKARRVLVFDC 155
Query: 283 DAHQGNGYEKDFMNETRIFIMETCITSKA---------KEAIRCRIELAPYTEDQHYLEK 333
D HQG+G T + CI+ K + L DQ YL+
Sbjct: 156 DVHQGDG------TATMLAQHPDCISVSVHAQRNYPARKPDSDLDVALPEGLTDQPYLDA 209
Query: 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIV 393
+ L+ +LR + PD+++Y+AG D+ +D LG +S QG++ RD LV + + +P+
Sbjct: 210 VTDALDLALRYYQPDLVLYDAGVDIHADDELGHFKVSSQGLLHRDRLVLSRCLAKDIPVA 269
Query: 394 MLTSGGYLKQTARII 408
+ GGY + ++
Sbjct: 270 AVIGGGYQRDLQGVV 284
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL LAL G ++++ GG+HHA +GGGFC + D+++ + L ++ D
Sbjct: 96 GTLLCAELALDHGLALHLSGGYHHAHYAQGGGFCIFNDLAMAAQTLVDQGKARRVLVFDC 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|239814774|ref|YP_002943684.1| histone deacetylase [Variovorax paradoxus S110]
gi|239801351|gb|ACS18418.1| Histone deacetylase [Variovorax paradoxus S110]
Length = 311
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 118/255 (46%), Gaps = 15/255 (5%)
Query: 162 NIIEPQEVSEEQLLIAHTEKYLKSLK-WSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH 220
++ + ++ +L +AHT +++ ++ S + A+ E+ + + + R
Sbjct: 42 DMDQAPRATDGELALAHTPQWIAAISDGSVSPQAMREI-------GFPWSEAMVERSRRS 94
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS----T 276
G T+ A A G + N+ GG HHA KGGGFC + D ++ +L+ +
Sbjct: 95 TGATIAACRAAFAGGVAANMAGGTHHAYADKGGGFCVFNDAAVAARLMQAEHGRAGRQLK 154
Query: 277 AMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEK 333
++DLD HQGNG F ++ +F + KEA +EL D YL
Sbjct: 155 VAVIDLDVHQGNGTASIFRSDPSVFTLSLHGQKNFPFRKEASDLDVELPDGCGDADYLTA 214
Query: 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIV 393
+E L+ R F P +++Y AG D D LG L ++ G+ RD VF A +RR+P+
Sbjct: 215 LEHALDELERRFSPGLVIYLAGADPFERDRLGRLKLTFDGLEARDRRVFDWAWQRRIPLA 274
Query: 394 MLTSGGYLKQTARII 408
+GGY A +
Sbjct: 275 FAMAGGYASDIAETV 289
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS----TAMI 60
T+ A A G + N+ GG HHA KGGGFC + D ++ +L+ + +
Sbjct: 98 TIAACRAAFAGGVAANMAGGTHHAYADKGGGFCVFNDAAVAARLMQAEHGRAGRQLKVAV 157
Query: 61 VDLDAHQ 67
+DLD HQ
Sbjct: 158 IDLDVHQ 164
>gi|402831312|ref|ZP_10880001.1| histone deacetylase family protein [Capnocytophaga sp. CM59]
gi|402282578|gb|EJU31116.1| histone deacetylase family protein [Capnocytophaga sp. CM59]
Length = 300
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 125/303 (41%), Gaps = 31/303 (10%)
Query: 112 PIVYRPEYNVHFFKLEK---LHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQE 168
PI P H F +EK LH LW+ I T+ + P++
Sbjct: 7 PIYTHPVPENHRFPMEKYALLHE----------QLLWEGI---------ATEADFFAPEK 47
Query: 169 VSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAG 228
V+ L +AHT Y++ V E + + Q+ R + V GT+E
Sbjct: 48 VALSSLYLAHTPAYVQDF-----VGQTLEERTRIRIGFVQSQQLIDRELTL-VQGTIEGA 101
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
AL + NI GG HHA +G GFC D ++ L +I+DLD HQGN
Sbjct: 102 LYALEGQVAFNIAGGTHHAYSDRGEGFCMLNDQAVAAAYLLDKGKAQRVLIIDLDVHQGN 161
Query: 289 GYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
G + F + +F KE I L T D Y+ ++ L
Sbjct: 162 GTAEIFAQKPAVFTFSMHAQGNYPFVKEQSDMDIALPDGTGDDAYITQLREVLPELFEKH 221
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PD + Y +G DVL +D G L +S +G +RD LVF +R++P+ GGY + +
Sbjct: 222 QPDFVFYQSGVDVLESDKFGKLRLSLEGCAQRDRLVFEACAQRQIPVQCSMGGGYSPRLS 281
Query: 406 RII 408
I+
Sbjct: 282 TIL 284
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+E AL + NI GG HHA +G GFC D ++ L +I+DL
Sbjct: 96 GTIEGALYALEGQVAFNIAGGTHHAYSDRGEGFCMLNDQAVAAAYLLDKGKAQRVLIIDL 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|427724084|ref|YP_007071361.1| histone deacetylase [Leptolyngbya sp. PCC 7376]
gi|427355804|gb|AFY38527.1| Histone deacetylase [Leptolyngbya sp. PCC 7376]
Length = 300
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 135/302 (44%), Gaps = 22/302 (7%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
+P++Y P Y + + H F K+K ++ L + I + + EP+
Sbjct: 3 FPVIYHPNY---VTPIPEEHRFPMPKFKRLYEMLLRD--------DVIRSEQVYEPEFPE 51
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+ L + H Y+ + + N + + +P + + R + +GGT+ L
Sbjct: 52 MDWLELVHDRNYIDAYR---NGTLDKKAQRRIGLP--WSKGVVTRTLTA-IGGTVTTAKL 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G + N GG HHA T G GFC D+++ K + +I+DLD HQG+G
Sbjct: 106 ALEHGLACNTAGGTHHAFPTYGSGFCILNDLAIAAKTVRHLGLAKKILIIDLDVHQGDGT 165
Query: 291 EKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
F +E ++ E SK K+ I L +D YL+ + L+ L +
Sbjct: 166 AFIFQDEPDVYTFSMHCEINFPSK-KQNSNFDIPLPAGLDDDGYLQILANHLDDLLSAVK 224
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
PD++ ++AG D + D LG LA++ +GI RR+ +V P+ + GGY K
Sbjct: 225 PDLVFFDAGVDTHVGDRLGKLAMTDRGIYRRERMVLSACHAAGYPVACVIGGGYSKNIDD 284
Query: 407 II 408
++
Sbjct: 285 LV 286
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G + N GG HHA T G GFC D+++ K + +I+DL
Sbjct: 98 GTVTTAKLALEHGLACNTAGGTHHAFPTYGSGFCILNDLAIAAKTVRHLGLAKKILIIDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|434393911|ref|YP_007128858.1| Histone deacetylase [Gloeocapsa sp. PCC 7428]
gi|428265752|gb|AFZ31698.1| Histone deacetylase [Gloeocapsa sp. PCC 7428]
Length = 304
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 128/307 (41%), Gaps = 50/307 (16%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PI+Y P+Y L + H F K+ ++ L + A+F T P +
Sbjct: 4 PIIYHPDYVA---PLPEGHRFPMPKFSRLYELLIADGVAH--PAQFHT------PVQPPS 52
Query: 172 EQLLIAHTEKYLKS---------------LKWSFNVAAISEVCPLVAVPNYFVQKCYLRP 216
E + + HT Y ++ L WS A + C
Sbjct: 53 EWITLVHTPDYFQAYCTGTLDPKAQRRIGLPWS--SALVKRTC----------------- 93
Query: 217 MRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST 276
VGGT+ LAL G + N GG HHA + G GFC + D+++ ++L Q + +
Sbjct: 94 --IAVGGTILTAKLALSHGLACNTAGGTHHAFPSYGSGFCIFNDLAIAARVLQQLQLVKK 151
Query: 277 AMIVDLDAHQGNGYEKDFMNETRIFIMET-CITS--KAKEAIRCRIELAPYTEDQHYLEK 333
+IVDLD HQG+G F + +F C + K+ + L ED YL+
Sbjct: 152 VLIVDLDVHQGDGTAYIFQEDASVFTFSMHCEVNFPGTKQKSDLDVPLPVGMEDDAYLQT 211
Query: 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIV 393
+ L L PD+++Y+AG D D LG LA++ GI RR+ V R P+
Sbjct: 212 LANYLPDLLSHVKPDLVLYDAGVDPHAGDRLGKLALTDAGIYRREMQVLSTCVSRGYPVA 271
Query: 394 MLTSGGY 400
+ GGY
Sbjct: 272 CVIGGGY 278
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G + N GG HHA + G GFC + D+++ ++L Q + + +IVDL
Sbjct: 98 GTILTAKLALSHGLACNTAGGTHHAFPSYGSGFCIFNDLAIAARVLQQLQLVKKVLIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|429211647|ref|ZP_19202812.1| histone deacetylase superfamily protein [Pseudomonas sp. M1]
gi|428156129|gb|EKX02677.1| histone deacetylase superfamily protein [Pseudomonas sp. M1]
Length = 306
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 142/307 (46%), Gaps = 32/307 (10%)
Query: 110 PWPIVYRPEYNV-----HFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNII 164
P P+VY +Y+ H F +EK F L +H LV++ + ++
Sbjct: 2 PLPLVYHDDYSPPFPAGHRFPMEK------------FRLLKEH----LVDSGLTSDAALL 45
Query: 165 EPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGT 224
P+ + L +AH Y++ ++ + E+ L +P + + R +R VGG+
Sbjct: 46 RPEPCPADILALAHDRGYIE--RYCSGDMSREELRRL-GLP--WSEALARRTVRA-VGGS 99
Query: 225 LEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDA 284
L LALR G + ++ GG HHA GFC + D++++ L S +I D D
Sbjct: 100 LLGAELALRHGLACHLAGGTHHAHHDHASGFCIFNDLAVIALHLLASGRAGRVLIFDCDV 159
Query: 285 HQGNGYEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLER 340
HQG+G + + + I + K A + I L + D YL ++ L+
Sbjct: 160 HQGDGTAR-ILEQVADAITVSLHCEKNFPARKAHSDWDIPLPLHMGDADYLRVVDEALDY 218
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
L + PD+++Y+AG DV +D LG L ++ G+ RDE V + R +P++ + GGY
Sbjct: 219 LLPLYQPDLVLYDAGVDVHKDDALGYLNLTDAGLAARDERVIERCLARDIPVLGVIGGGY 278
Query: 401 LKQTARI 407
K A +
Sbjct: 279 DKDRAAL 285
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L LALR G + ++ GG HHA GFC + D++++ L S +I D
Sbjct: 98 GSLLGAELALRHGLACHLAGGTHHAHHDHASGFCIFNDLAVIALHLLASGRAGRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|416018674|ref|ZP_11565602.1| histone deacetylase family protein [Pseudomonas syringae pv.
glycinea str. B076]
gi|416024596|ref|ZP_11568657.1| histone deacetylase family protein [Pseudomonas syringae pv.
glycinea str. race 4]
gi|422403310|ref|ZP_16480368.1| histone deacetylase family protein [Pseudomonas syringae pv.
glycinea str. race 4]
gi|320322646|gb|EFW78739.1| histone deacetylase family protein [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330569|gb|EFW86548.1| histone deacetylase family protein [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330873527|gb|EGH07676.1| histone deacetylase family protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 305
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 137/296 (46%), Gaps = 22/296 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y +Y+ F + P D ++ + +YLV++ + ++ P+
Sbjct: 4 PLIYHEDYSTDFPADHRF-PMDK----------FRLLRDYLVDSGLTSDVQLMRPELCPA 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ L +AH Y+ N E + +P + + R +R VGG+L A
Sbjct: 53 DILALAHDPSYISRY---LNGDLSREDQRRLGLP--WSEALARRTVRA-VGGSLLTAEQA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L+ G + ++ GG HHA GFC + D++++ + L QS + +I D D HQG+G
Sbjct: 107 LKHGMACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQGDGTA 166
Query: 292 KDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ + +T I + K A + + I L D YL ++ L L + P
Sbjct: 167 R-ILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVVDDLLNYLLPFYKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
D+++Y+AG DV +D LG L ++ QG+ RDE V R +P++ + GGY K
Sbjct: 226 DLVLYDAGVDVHKDDALGYLQLTDQGVANRDEAVLRHCLSRDIPVMGVIGGGYSKD 281
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L AL+ G + ++ GG HHA GFC + D++++ + L QS + +I D
Sbjct: 98 GSLLTAEQALKHGMACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|323498238|ref|ZP_08103240.1| histone deacetylase/AcuC/AphA family protein [Vibrio sinaloensis
DSM 21326]
gi|323316666|gb|EGA69675.1| histone deacetylase/AcuC/AphA family protein [Vibrio sinaloensis
DSM 21326]
Length = 307
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 141/310 (45%), Gaps = 34/310 (10%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYL---------WKHIFNYLVEAKFITQDN 162
P++Y Y+ L + H + K++ +F + W + F Y
Sbjct: 3 PLIYHAIYSE--LPLPEGHRYPINKYRLLFEAIEQQRAEDTKWNNTFRY----------- 49
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
++PQ VS++++ H +Y++ L S +AA P + + + + G
Sbjct: 50 -VQPQAVSQQEVEQVHCREYIQLLT-SGTLAA-----PKMRRIGFPWSEELITRTLTSAG 102
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
GT E L G +I++ GG+HHA G GFC D+ L K + + +IVD
Sbjct: 103 GTCETVSQCLDYGVAIHLSGGYHHAHYDFGSGFCLVNDLVLAAKRALTLEGVDKVLIVDS 162
Query: 283 DAHQGNGYEKDFMNETRI----FIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGL 338
D H G+G +E I F E ++ ++ I LA T D +L + +
Sbjct: 163 DVHHGDGTATLCEDEASIVTLSFHCEKNFPARKPDS-DLDIPLARETRDDEFLPTFRSVV 221
Query: 339 ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSG 398
E ++ PD+IVY+AG D+ +D LG L +S +GI RD +F A+++++PI + G
Sbjct: 222 EMAVNLHQPDLIVYDAGVDIHEDDELGYLNVSSEGIFARDVFMFELAKQKQIPIACVVGG 281
Query: 399 GYLKQTARII 408
GY Q ++
Sbjct: 282 GYRSQHQDLV 291
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT E L G +I++ GG+HHA G GFC D+ L K + + +IVD
Sbjct: 103 GTCETVSQCLDYGVAIHLSGGYHHAHYDFGSGFCLVNDLVLAAKRALTLEGVDKVLIVDS 162
Query: 64 DAHQ 67
D H
Sbjct: 163 DVHH 166
>gi|375148298|ref|YP_005010739.1| histone deacetylase [Niastella koreensis GR20-10]
gi|361062344|gb|AEW01336.1| Histone deacetylase [Niastella koreensis GR20-10]
Length = 307
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 113/254 (44%), Gaps = 9/254 (3%)
Query: 158 ITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPM 217
IT N+ P +E +L H E Y++ L+ A P ++ +
Sbjct: 44 ITSHNLFAPAACDDEIVLWTHDEAYVQKLQQQTLSAREQRHIGFPQSPQLTRREFVI--- 100
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
GT++ A G ++N+ GG HHA +G GFC D + L + +
Sbjct: 101 ---AQGTIDCCDYAFEHGVALNVAGGTHHAFTDRGEGFCLLNDFGVAANYLLKKELARRI 157
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
+I+DLD HQGNG F +E R+F KE I L TED YL +
Sbjct: 158 IIIDLDVHQGNGTASIFEHEPRVFTFSMHGAHNYPFHKEKSDLDIALNDGTEDGLYLSLL 217
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
++ L L PD Y +G D+L D G L +S +G RRDELVF + ++RR+P V+
Sbjct: 218 QSNLLTLLDQIKPDFAFYLSGVDILSTDKFGKLKVSMEGCRRRDELVFSQLKKRRIPCVV 277
Query: 395 LTSGGYLKQTARII 408
GGY I+
Sbjct: 278 AMGGGYSPDIKTIV 291
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++ A G ++N+ GG HHA +G GFC D + L + + +I+DL
Sbjct: 103 GTIDCCDYAFEHGVALNVAGGTHHAFTDRGEGFCLLNDFGVAANYLLKKELARRIIIIDL 162
Query: 64 DAHQ 67
D HQ
Sbjct: 163 DVHQ 166
>gi|449134933|ref|ZP_21770397.1| histone deacetylase/AcuC/AphA family protein [Rhodopirellula
europaea 6C]
gi|448886412|gb|EMB16819.1| histone deacetylase/AcuC/AphA family protein [Rhodopirellula
europaea 6C]
Length = 305
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 135/284 (47%), Gaps = 21/284 (7%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQK 211
+VE+ D +I PQ ++EQLL HT Y++ ++ + + + P + +K
Sbjct: 31 IVESDHHRDDALIVPQAATDEQLLHCHTPDYVQRVQ---SGTLTKQEIRRIGFP--WSEK 85
Query: 212 CYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS 271
R R G T+ A AL G S N+ GG HHA +G G+C + D ++ ++ L
Sbjct: 86 MVERSRRS-TGATISAARAALEEGVSANLAGGTHHAFAGEGEGYCVFNDAAVAIRTLQSE 144
Query: 272 KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSKAKE-AIR-----CRIELAPYT 325
I A I+DLD HQGNG + +F TC K +R + L T
Sbjct: 145 GLIQRATIIDLDVHQGNGTASILKDVPSVF---TCSVHGVKNFPLRKMPSDLDVSLPDGT 201
Query: 326 EDQHY---LEKIEAGLER-SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV 381
D Y L + A LE+ S D+++Y AG D ND LG L+++ +G+ +RDE+V
Sbjct: 202 GDDDYCDALRSVLAKLEKHQSDSGRFDLVIYLAGADPFKNDRLGRLSLTMEGLRQRDEMV 261
Query: 382 FMKARERRVPIVMLTSGGYLKQTARI--IADSILNLADLGLISR 423
R +P+ + +GGY + I I L++A + +SR
Sbjct: 262 LQWCRHNDLPVAIAMAGGYSVEVKEIVDIHSQTLHIAKVWSLSR 305
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
T+ A AL G S N+ GG HHA +G G+C + D ++ ++ L I A I+DL
Sbjct: 96 ATISAARAALEEGVSANLAGGTHHAFAGEGEGYCVFNDAAVAIRTLQSEGLIQRATIIDL 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|398869111|ref|ZP_10624496.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM78]
gi|398231625|gb|EJN17611.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM78]
Length = 312
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 139/301 (46%), Gaps = 22/301 (7%)
Query: 107 VTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEP 166
+ P P++Y +Y+ F P D + F L H LV++ +++ P
Sbjct: 5 IIMPLPLIYHEDYSPEF-------PADHRFPMDKFRLLRDH----LVDSGLTRDADLLRP 53
Query: 167 QEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLE 226
Q + L +AH Y++ S +++ E + +P + + R +R VGG+L
Sbjct: 54 QLCPADILALAHDPSYIERY-MSGDLS--REDQRRLGLP--WSEALTRRTVRA-VGGSLL 107
Query: 227 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 286
A AL G + ++ GG HHA GFC + D++++ L +S ++ +I D D HQ
Sbjct: 108 AAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHFLLESGRVNRVLIFDCDVHQ 167
Query: 287 GNGYEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSL 342
G+G + N + E ++ E+ I L D YL+ ++ L L
Sbjct: 168 GDGTARILHNTPEAVTVSLHCEKNFPARKAES-DWDIPLPNGMGDADYLQVVDDALNYLL 226
Query: 343 RSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402
+ PD+++Y+AG DV +D LG L ++ G+ RDE V R +P+V + GGY K
Sbjct: 227 PLYQPDLVLYDAGVDVHKDDALGYLKLTDNGVAARDESVMRHCLGRDIPVVGVIGGGYSK 286
Query: 403 Q 403
Sbjct: 287 D 287
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ L +S ++ +I D
Sbjct: 104 GSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHFLLESGRVNRVLIFDC 163
Query: 64 DAHQ 67
D HQ
Sbjct: 164 DVHQ 167
>gi|219848505|ref|YP_002462938.1| histone deacetylase superfamily protein [Chloroflexus aggregans DSM
9485]
gi|219542764|gb|ACL24502.1| histone deacetylase superfamily [Chloroflexus aggregans DSM 9485]
Length = 299
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 118/256 (46%), Gaps = 11/256 (4%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL-KSLKWSFNVAAISEVCPLVAVPNYFVQ 210
++ ++ D + P+ S ++L+ HT Y+ + + A I + +
Sbjct: 31 VIAENIVSLDRLHVPEPASVDELVRVHTPAYIERVMTGRLTGAEIRRI-------GFPWS 83
Query: 211 KCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQ 270
+ R G T+ A +AL+ G +N+ GG HHA G G+C + D ++ + +
Sbjct: 84 PQMVERSRRSAGATIAACRVALQEGVGVNLAGGTHHAFADAGAGYCVFNDAAVAARAMQA 143
Query: 271 SKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTED 327
+ I+D D HQG+G F ++ +F K+ I L T D
Sbjct: 144 EGRVRQIAIIDCDVHQGDGTAAIFADDPTVFTFSIHGAHNFPFRKQQSDLDIALPDATGD 203
Query: 328 QHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE 387
YL+ +E GL ++ + PD+++Y AG D +D LG L+++ G+ RD LVF R
Sbjct: 204 AAYLDALEWGLRQTFATAKPDLVIYLAGADPYYDDRLGRLSLTKAGLAERDRLVFGYCRS 263
Query: 388 RRVPIVMLTSGGYLKQ 403
VP+ + +GGY +Q
Sbjct: 264 AGVPVAVTMAGGYARQ 279
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
T+ A +AL+ G +N+ GG HHA G G+C + D ++ + + + I+D D
Sbjct: 97 TIAACRVALQEGVGVNLAGGTHHAFADAGAGYCVFNDAAVAARAMQAEGRVRQIAIIDCD 156
Query: 65 AHQ-------FSDYYFPSAHSIKRKRKVEFLKERKALE 95
HQ F+D SI F K++ L+
Sbjct: 157 VHQGDGTAAIFADDPTVFTFSIHGAHNFPFRKQQSDLD 194
>gi|399063313|ref|ZP_10746847.1| deacetylase, histone deacetylase/acetoin utilization protein
[Novosphingobium sp. AP12]
gi|398032393|gb|EJL25735.1| deacetylase, histone deacetylase/acetoin utilization protein
[Novosphingobium sp. AP12]
Length = 303
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 115/240 (47%), Gaps = 13/240 (5%)
Query: 166 PQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTL 225
P+ + E L H Y+ + S +V+A + + ++ L P GGT
Sbjct: 44 PEVMPREWLEAVHEPAYVDEV-ISCSVSAAKQRRIGFVIDERISRRSQLSP-----GGTW 97
Query: 226 EAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAH 285
A LAL+ G++ N GG HHA G G+C + D++L L +S +I+DLD H
Sbjct: 98 LAAKLALQYGYAANSAGGSHHALADSGAGYCVFNDLALAANRLIDEGDVSRILILDLDVH 157
Query: 286 QGNGYEKDFMNETRIFIM-----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLER 340
QG+G + IF + + T KA+ ++ I L T+D YLE + L
Sbjct: 158 QGDGTAALTAGRSDIFTLSIHAEKNFPTRKARSSL--DIGLPDATDDAGYLEALTGSLRP 215
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
L F P++I+ AG D +D LG L+++ +G+ RD V +A+ R +P+ GGY
Sbjct: 216 VLDHFMPELILLQAGVDAHADDKLGRLSLTDEGLADRDCFVATEAKRRGIPLASTLGGGY 275
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A LAL+ G++ N GG HHA G G+C + D++L L +S +I+DL
Sbjct: 95 GTWLAAKLALQYGYAANSAGGSHHALADSGAGYCVFNDLALAANRLIDEGDVSRILILDL 154
Query: 64 DAHQ 67
D HQ
Sbjct: 155 DVHQ 158
>gi|452749112|ref|ZP_21948882.1| histone deacetylase family protein [Pseudomonas stutzeri NF13]
gi|452006938|gb|EMD99200.1| histone deacetylase family protein [Pseudomonas stutzeri NF13]
Length = 306
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 139/302 (46%), Gaps = 30/302 (9%)
Query: 112 PIVYRPEYNV-----HFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEP 166
P+V+ +Y+ H F +EK ++ + ++LV T+ ++ P
Sbjct: 4 PLVFHDDYSPPLPPGHRFPMEK----------------FRLLRDHLVALGLTTEAALLRP 47
Query: 167 QEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLE 226
S + L +AH Y++ ++ E+ L +P + + R +R VGG+L
Sbjct: 48 ALCSHDILTLAHDRNYVE--RYCSGAMGRDELRRL-GLP--WSPELAQRTVRA-VGGSLL 101
Query: 227 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 286
A AL+ G + ++ GG HHA GFC + D++++ L +S + +I D D HQ
Sbjct: 102 AAEQALQHGLACHLAGGTHHAHHDHASGFCIFNDLAVIALYLLESGRVGRVLIFDCDVHQ 161
Query: 287 GNGYEKDFMN-ETRIFIMETCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
G+G + N + + C + K I L P D YL+ + L L
Sbjct: 162 GDGTARILENVADAVTVSLHCEKNFPARKAHSDWDIPLPPGMGDDAYLKVVHDTLNYLLP 221
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LGLL+++ G+ RD V R +P+V L GGY K
Sbjct: 222 IYQPDLVLYDAGVDVHRDDALGLLSLTDAGLAARDSAVLDHCLGRDIPVVGLIGGGYDKD 281
Query: 404 TA 405
A
Sbjct: 282 RA 283
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL+ G + ++ GG HHA GFC + D++++ L +S + +I D
Sbjct: 98 GSLLAAEQALQHGLACHLAGGTHHAHHDHASGFCIFNDLAVIALYLLESGRVGRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|404396176|ref|ZP_10987971.1| hypothetical protein HMPREF0989_05014 [Ralstonia sp. 5_2_56FAA]
gi|404278975|gb|EJZ44406.1| hypothetical protein HMPREF0989_05014 [Ralstonia sp. 5_2_56FAA]
Length = 335
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 119/247 (48%), Gaps = 15/247 (6%)
Query: 162 NIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHV 221
++ E ++ LL+AHT +Y++++ A P V++ R
Sbjct: 54 SMQEAPRADDDALLLAHTFEYVEAVSAGRLDPARQREIGFPWSPE-MVERS-----RRSA 107
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST----- 276
G T+ A AL G ++N+ GG HHA KGGGFC + D ++ + + Q +S T
Sbjct: 108 GATMAACDAALADGIAVNLAGGTHHAYADKGGGFCVFNDAAIASRWI-QRQSGRTPGDFP 166
Query: 277 AMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEK 333
IVDLD HQGNG ++ +F + KEA + L D+ YL+
Sbjct: 167 VAIVDLDVHQGNGTASILRDDATVFTLSLHGEKNYPFRKEASDLDVGLHDGCGDEDYLQA 226
Query: 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIV 393
+ L+ F P +I+Y AG D D LG L ++ QG+ RRD+ VF A +RR+P+
Sbjct: 227 LTGALDILAGRFKPQLIIYLAGADPHEGDRLGRLKLTLQGLARRDQEVFDFAYQRRIPVA 286
Query: 394 MLTSGGY 400
+ +GGY
Sbjct: 287 VTMAGGY 293
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST-----AM 59
T+ A AL G ++N+ GG HHA KGGGFC + D ++ + + Q +S T
Sbjct: 110 TMAACDAALADGIAVNLAGGTHHAYADKGGGFCVFNDAAIASRWI-QRQSGRTPGDFPVA 168
Query: 60 IVDLDAHQ 67
IVDLD HQ
Sbjct: 169 IVDLDVHQ 176
>gi|443311907|ref|ZP_21041529.1| deacetylase, histone deacetylase/acetoin utilization protein
[Synechocystis sp. PCC 7509]
gi|442777982|gb|ELR88253.1| deacetylase, histone deacetylase/acetoin utilization protein
[Synechocystis sp. PCC 7509]
Length = 305
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 136/301 (45%), Gaps = 22/301 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y +Y L + H F K++ ++ L + P+ +
Sbjct: 4 PLIYHCDY---VAALPEQHRFPMPKFRQLYELL--------IATGVAHPQQFFLPEIPCQ 52
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+ L + HT +Y+++ L+ + + A + L P + C VGGT+ L
Sbjct: 53 QWLELVHTSEYVQAYLQGTLDAKAQRRI-GLPWSPALVKRTCTA------VGGTILTAQL 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL+ G + N GG HHA + G G+C + D+++ +++ + +I+DLD HQG+G
Sbjct: 106 ALKYGLACNTAGGTHHAFPSYGSGYCIFNDLAIASRVIQRLNLARKILIIDLDVHQGDGT 165
Query: 291 EKDFMNETRIFIMET-CITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
F N+ +F C + K+ I L ED+ YL+ + L L P
Sbjct: 166 AFIFQNDDSVFTFSMHCEVNFPGTKQVSDLDIPLPVGMEDEDYLQTLANYLPDVLNQVKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D+++Y+AG D + D LG LA++ GI RR+ V R P+ + GGY + +
Sbjct: 226 DLVLYDAGVDTHVGDRLGKLALTDTGIFRREMQVLSTCIAARYPVACVIGGGYAEDLKSL 285
Query: 408 I 408
+
Sbjct: 286 V 286
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL+ G + N GG HHA + G G+C + D+++ +++ + +I+DL
Sbjct: 98 GTILTAQLALKYGLACNTAGGTHHAFPSYGSGYCIFNDLAIASRVIQRLNLARKILIIDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|269962118|ref|ZP_06176472.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269833202|gb|EEZ87307.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 306
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 137/300 (45%), Gaps = 15/300 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y+ L H + K++ YL++ + L + Q +P +S
Sbjct: 3 PLIYHPIYSQ--LDLPDGHRYPIMKYR----YLYQAVMEKLASEDWGGQIECFQPSPLST 56
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ + H +Y+ L V + + + + R + G L A A
Sbjct: 57 DDIKRVHDGEYVDLL-----VTGAMPAAKMRRIGFPWSEALITRTLTSTAGTVLTAE-KA 110
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G +I++ GG+HHA + G GFC + D+++ K + ++ + MI+D D H G+G
Sbjct: 111 LEHGVAIHLSGGYHHAHKNFGSGFCLFNDLAIAAKHMLDNEHVDKVMIIDSDVHHGDGTA 170
Query: 292 KDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
+E I + C + K + L+ T D+ YL + +E ++ PD
Sbjct: 171 TICESEPDIVTLSFHCDKNFPARKPDSDLDVPLSRDTNDETYLMTFKEVVEMAINLHRPD 230
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
I++Y+AG D+ ++D LG +S +GI RD + +++ +P+ + GGY + A ++
Sbjct: 231 IVIYDAGVDIHVDDELGYFNVSTEGIFERDRFLMQLMKDKGIPVAAVVGGGYRSEHADLV 290
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ AL G +I++ GG+HHA + G GFC + D+++ K + ++ + MI+D
Sbjct: 102 GTVLTAEKALEHGVAIHLSGGYHHAHKNFGSGFCLFNDLAIAAKHMLDNEHVDKVMIIDS 161
Query: 64 DAHQ 67
D H
Sbjct: 162 DVHH 165
>gi|398845414|ref|ZP_10602449.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM84]
gi|398253577|gb|EJN38699.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM84]
Length = 304
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 137/298 (45%), Gaps = 22/298 (7%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F E P D + H ++LV++ ++ P
Sbjct: 2 PLPLIYHDDYSPEF-PAEHRFPMDKFRLLH----------DHLVDSGLTCDQALLRPDIC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
+ L +AH Y++ N E + +P + + R +R VGG+L
Sbjct: 51 PNDILALAHDRGYIERY---MNGDLSREDQRRLGLP--WSEALARRTVRA-VGGSLLTAE 104
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
+ALR G + ++ GG HHA GFC + D++++ + L ++ + +I D D HQG+G
Sbjct: 105 MALRHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISRYLLEAGRVHRVLIFDCDVHQGDG 164
Query: 290 YEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSF 345
+ + +T I + + A + I L D YL+ ++ L L +
Sbjct: 165 TAR-ILQDTPDAITVSLHCEQNFPARKAHSDWDIPLPRGMGDTAYLKVVDDALNYLLPLY 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P+V + GGY K
Sbjct: 224 QPDLVLYDAGVDVHKDDALGYLQLTDEGLAARDERVMRHCLGRDIPVVGVIGGGYSKD 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L +ALR G + ++ GG HHA GFC + D++++ + L ++ + +I D
Sbjct: 98 GSLLTAEMALRHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISRYLLEAGRVHRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|77461139|ref|YP_350646.1| histone deacetylase superfamily protein [Pseudomonas fluorescens
Pf0-1]
gi|77385142|gb|ABA76655.1| putative histone deacetylase family protein [Pseudomonas
fluorescens Pf0-1]
Length = 306
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 139/300 (46%), Gaps = 26/300 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F P D + F L H LV++ ++++ P+
Sbjct: 2 PLPLIYHEDYSPEF-------PADHRFPMDKFRLLRDH----LVDSGLTRDEDLLRPELC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVP-NYFVQKCYLRPMRYHVGGTLEA 227
+ L +AH Y++ + +S E + +P N + + +R VGG++ A
Sbjct: 51 PADILALAHDRSYIER----YMSGELSREDQRRLGLPWNEALARRTVRA----VGGSILA 102
Query: 228 GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQG 287
AL G + ++ GG HHA GFC + D++++ L QS ++ +I D D HQG
Sbjct: 103 AEKALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAIISHYLLQSGRVNRVLIFDCDVHQG 162
Query: 288 NGYEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+G + N + E ++ E+ I L D YL+ ++ L L
Sbjct: 163 DGTARILHNTPEAITVSLHCEKNFPARKAES-DWDIPLPNGMGDADYLKVVDDALNYLLP 221
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P+V + GGY K
Sbjct: 222 LYQPDLVLYDAGVDVHKDDALGYLQLTDEGVAARDESVMRHCLGRDIPVVGVIGGGYSKD 281
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ A AL G + ++ GG HHA GFC + D++++ L QS ++ +I D
Sbjct: 98 GSILAAEKALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAIISHYLLQSGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|384250439|gb|EIE23918.1| Arginase/deacetylase, partial [Coccomyxa subellipsoidea C-169]
Length = 304
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 128/295 (43%), Gaps = 23/295 (7%)
Query: 122 HFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQD--NIIEPQEVSEEQLLIAHT 179
H LE+ H F K++ + +E +D I E + +EE L +AH
Sbjct: 14 HEVPLEEKHRFPMSKYR---------LTRLALEGDATVKDLLEIREAPQATEEDLALAHD 64
Query: 180 EKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWS 237
Y++ F + + P + +R R GGTL A L + ++
Sbjct: 65 PGYVRRF---FEGQLGPKEMRSIGFP---WSEGLVRRARASAGGTLAATRALLEWQLPFT 118
Query: 238 INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNE 297
NI GG HHA +G GFC + DI++ ++ + I +++DLD HQGNG F +
Sbjct: 119 ANIAGGTHHAFAGRGEGFCVFNDIAVSARMAMTEEGIEKVLVIDLDVHQGNGTSAIFAQD 178
Query: 298 TRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYN 353
R+ + R + + L T D+ YL + L R P ++ +
Sbjct: 179 DRVTTFDVHGDKNYPWKTRSKSTYDVALKDATRDEEYLALLREWLPRLFAEHRPQLVFFQ 238
Query: 354 AGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
AG D + D G L+++ +G++ R+E+V K + VP V+ GGY + + +
Sbjct: 239 AGVDAMEKDSFGRLSLTRKGLLERNEMVLSKCLQEGVPTVITMGGGYSRPIDKTV 293
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L + ++ NI GG HHA +G GFC + DI++ ++ + I +++
Sbjct: 102 GTLAATRALLEWQLPFTANIAGGTHHAFAGRGEGFCVFNDIAVSARMAMTEEGIEKVLVI 161
Query: 62 DLDAHQ 67
DLD HQ
Sbjct: 162 DLDVHQ 167
>gi|120437426|ref|YP_863112.1| histone deacetylase [Gramella forsetii KT0803]
gi|117579576|emb|CAL68045.1| histone deacetylase family protein [Gramella forsetii KT0803]
Length = 300
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 116/253 (45%), Gaps = 9/253 (3%)
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
+N +P+ E +L H +Y+K LK + +++ + V + + + + +
Sbjct: 39 NDENFFKPEFPEESHILNVHDPEYVKRLK-NLDLSKKE-----IRVSGFPLSQELVNREQ 92
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
GT++A AL+ G ++NI GG HHA + FC D ++ + L + +
Sbjct: 93 IIANGTIKACDYALKNGIAMNIAGGTHHAFTNRAEAFCLLNDQAIGARYLQEKGLAKKIL 152
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIE 335
++DLD HQGNG + F N+ +F KE IE T+D YLEK++
Sbjct: 153 MIDLDVHQGNGTAEIFKNDASVFTFSMHGKGNYPFRKEKSDLDIEFDDGTQDAKYLEKLK 212
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
+ L + + PD I Y G D+L D LG L+ S +G RD V + +P+
Sbjct: 213 SILPKLIEKTRPDFIFYLCGVDILKTDKLGRLSCSIEGCRERDRFVLQTCHDLNIPVECS 272
Query: 396 TSGGYLKQTARII 408
GGY K II
Sbjct: 273 MGGGYSKDIKHII 285
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++A AL+ G ++NI GG HHA + FC D ++ + L + +++DL
Sbjct: 97 GTIKACDYALKNGIAMNIAGGTHHAFTNRAEAFCLLNDQAIGARYLQEKGLAKKILMIDL 156
Query: 64 DAHQ-------FSDYYFPSAHSIKRKRKVEFLKERKALEDEITSEPQES 105
D HQ F + S+ K F KE+ L+ E Q++
Sbjct: 157 DVHQGNGTAEIFKNDASVFTFSMHGKGNYPFRKEKSDLDIEFDDGTQDA 205
>gi|363580001|ref|ZP_09312811.1| histone deacetylase [Flavobacteriaceae bacterium HQM9]
Length = 300
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 114/253 (45%), Gaps = 9/253 (3%)
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
T++N EP VS+ LL HT++Y+++L N+ + V++ ++
Sbjct: 39 TKENFFEPGVVSKTDLLRVHTKEYIQNL-TDLNLPKTEARAIGFPLSAALVEREFVI--- 94
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
GT++A AL+ G ++NI GG HHA +G FC D ++ L + +
Sbjct: 95 --TQGTIDAAKFALQHGIAMNIAGGTHHAFSNRGEAFCLLNDQAVAAAYLLHYQLAKKIL 152
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIE 335
IVDLD HQGNG + F N+ +F KE + L T D YL+ ++
Sbjct: 153 IVDLDVHQGNGTAEIFQNQANVFTFSMHGEKNYPFRKETSDLDMALPNGTNDDTYLKLLK 212
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
L P+ + Y G D+L+ D LG L+ + QG RD V ++ P++
Sbjct: 213 EKLPELYAKVQPNFVFYLCGVDILVTDKLGKLSCTLQGCKERDRFVLEFFNTKKAPVMCS 272
Query: 396 TSGGYLKQTARII 408
GGY II
Sbjct: 273 MGGGYSPDIKTII 285
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++A AL+ G ++NI GG HHA +G FC D ++ L + +IVDL
Sbjct: 97 GTIDAAKFALQHGIAMNIAGGTHHAFSNRGEAFCLLNDQAVAAAYLLHYQLAKKILIVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|88857897|ref|ZP_01132539.1| histone deacetylase family protein [Pseudoalteromonas tunicata D2]
gi|88819514|gb|EAR29327.1| histone deacetylase family protein [Pseudoalteromonas tunicata D2]
Length = 302
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 139/304 (45%), Gaps = 33/304 (10%)
Query: 115 YRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIE---PQEVSE 171
Y P Y+ L H F KK++ +F + K + N + P +
Sbjct: 7 YHPCYST--LDLPATHRFPIKKYRLLFEAI-----------KTLDDSNHFQFQLPTPATS 53
Query: 172 EQLLIAHTEKY-LKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAG 228
+QLL+ H+ +Y ++ L + AI ++ P V++ L VG ++ A
Sbjct: 54 QQLLLCHSSEYVMQFLTGELDSKAIRKM----GFPWSKELVERTCLS-----VGASINAA 104
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
+AL+ G+S+ + GG+HHA G GFC + D+++ + + +I D D HQG+
Sbjct: 105 QIALKYGFSLQLSGGYHHAFTDFGSGFCIFNDLAIAAAHCIELGLVERVLIFDCDVHQGD 164
Query: 289 GYEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRS 344
G + ++ I E +K +++ L D YL ++ L + R
Sbjct: 165 GTAQISQQQSNIISCSIHCEQNFPAKKQQS-DLDFALNKGCTDDEYLSTVQQALTLATRL 223
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT 404
+ PD+I+YNAG D+ D LG L IS +G+ +RD V + + +P+ GGY++
Sbjct: 224 YQPDLILYNAGADIFAQDELGYLNISLEGVYQRDLAVIGFCQAQSIPLACAIGGGYMRDI 283
Query: 405 ARII 408
+++
Sbjct: 284 NQLV 287
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 28/136 (20%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
++ A +AL+ G+S+ + GG+HHA G GFC + D+++ + + +I D
Sbjct: 99 ASINAAQIALKYGFSLQLSGGYHHAFTDFGSGFCIFNDLAIAAAHCIELGLVERVLIFDC 158
Query: 64 DAHQ-------------------FSDYYFPSAHSIKRKRKVEFLKERKALEDEITSEPQE 104
D HQ + FP+ K++ ++F + +DE S Q+
Sbjct: 159 DVHQGDGTAQISQQQSNIISCSIHCEQNFPAK---KQQSDLDFALNKGCTDDEYLSTVQQ 215
Query: 105 --SVVTRPWPIVYRPE 118
++ TR +Y+P+
Sbjct: 216 ALTLATR----LYQPD 227
>gi|421497632|ref|ZP_15944790.1| histone deacetylase/AcuC/AphA family protein [Aeromonas media WS]
gi|407183367|gb|EKE57266.1| histone deacetylase/AcuC/AphA family protein [Aeromonas media WS]
Length = 298
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 129/304 (42%), Gaps = 33/304 (10%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
I Y P Y+ L + H F K++ I+ +L Y + E S E
Sbjct: 5 IFYHPYYSS--LTLPERHRFPLAKYQAIYQHLAA--LGY----------PLAEAPAASRE 50
Query: 173 QLLIAHTEKYLKS-LKWSFNVAAISEV----CPLVAVPNYFVQKCYLRPMRYHVGGTLEA 227
Q+ H Y+++ L AI + P++ R +R VG T+ A
Sbjct: 51 QIARVHDADYVEAALTGQLEREAIRRLGFPWSPMLIE----------RTLRS-VGATVAA 99
Query: 228 GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQG 287
AL +G + I GG+HHA G GFC + D+ + + S +IVDLD HQG
Sbjct: 100 SRHALEQGCGLQISGGYHHAHRDFGSGFCLFNDLVIAARACLDEGSCEQVLIVDLDVHQG 159
Query: 288 NGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRS 344
+G I + K A L ED YLE + L +LR
Sbjct: 160 DGSAALCTGSQDIITLSLHGEHNFPHHKPASHLDFALPSGMEDDAYLETLSQALNLALRL 219
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT 404
+ PD+I+Y AG DV D LG L++S G+ +RD +VF A +PI + GGY +
Sbjct: 220 YHPDLILYQAGVDVHQADELGYLSLSDAGVRQRDAMVFDCAISNGLPIAAVPGGGYRRDW 279
Query: 405 ARII 408
++I
Sbjct: 280 RQLI 283
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
T+ A AL +G + I GG+HHA G GFC + D+ + + S +IVDLD
Sbjct: 96 TVAASRHALEQGCGLQISGGYHHAHRDFGSGFCLFNDLVIAARACLDEGSCEQVLIVDLD 155
Query: 65 AHQ 67
HQ
Sbjct: 156 VHQ 158
>gi|395499064|ref|ZP_10430643.1| histone deacetylase family protein [Pseudomonas sp. PAMC 25886]
Length = 306
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 139/299 (46%), Gaps = 24/299 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F P D + F L H LVE+ ++ P+
Sbjct: 2 PLPLIYHDDYSPEF-------PADHRFPMDKFRLLRDH----LVESGLTRDSQLLRPELC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAG 228
E L +AH Y++ + +S E + +P + + R +R VGG+L A
Sbjct: 51 PAEILALAHEPGYIER----YMSGELSREDQRRLGLP--WSEALARRTVRA-VGGSLLAA 103
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
AL G + ++ GG HHA GFC + D++++ L S ++ +I D D HQG+
Sbjct: 104 EQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDCDVHQGD 163
Query: 289 GYEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRS 344
G + +++T I + K A + I L D+ YL+ ++ L L
Sbjct: 164 GTAR-ILHDTPDAITVSLHCEKNFPARKAESDWDIPLPMGMGDEDYLKVVDDALNYLLPL 222
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P+V + GGY K
Sbjct: 223 YQPDLVLYDAGVDVHKDDALGYLKLTDEGVAARDESVMRHCLGRDIPVVGVIGGGYSKD 281
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ L S ++ +I D
Sbjct: 98 GSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|359446646|ref|ZP_09236297.1| hypothetical protein P20439_2635 [Pseudoalteromonas sp. BSi20439]
gi|358039452|dbj|GAA72546.1| hypothetical protein P20439_2635 [Pseudoalteromonas sp. BSi20439]
Length = 267
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 119/252 (47%), Gaps = 15/252 (5%)
Query: 164 IEPQEVSEEQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNY--FVQKCYLRPMRYH 220
I P + QL + H+ Y+ L S A+ ++ P+ V++ Y
Sbjct: 13 ISPSPATTAQLSLCHSSDYIADFLNGSLTDKAVKKM----GFPHSPELVER-----TLYS 63
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
VG +++A A++ G + N+ GG+HHA G GFC + D+++ L ++ T +I
Sbjct: 64 VGASIQAAESAIKSGLAANLSGGYHHAYSNYGSGFCIFNDLAIAAAHLIATEQADTVLIF 123
Query: 281 DLDAHQGNGYEKDFMNETRIFIMET-CITS--KAKEAIRCRIELAPYTEDQHYLEKIEAG 337
D D HQG+G + + +I C + + K+ L T D YL +E
Sbjct: 124 DCDVHQGDGTAQITQHHEQIISCSIHCEQNFPRQKQHSNYDFALPANTIDAEYLTTLEQA 183
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
LE +R PDII+YNAG D+ D LGL +S G+ RD V ++R +P++
Sbjct: 184 LELCVRLHQPDIILYNAGADIYTKDELGLFDVSLAGVYARDFAVLNFCKQRNIPLMCALG 243
Query: 398 GGYLKQTARIIA 409
GGY + +++
Sbjct: 244 GGYQRNINDLVS 255
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
+++A A++ G + N+ GG+HHA G GFC + D+++ L ++ T +I D
Sbjct: 66 ASIQAAESAIKSGLAANLSGGYHHAYSNYGSGFCIFNDLAIAAAHLIATEQADTVLIFDC 125
Query: 64 DAHQ 67
D HQ
Sbjct: 126 DVHQ 129
>gi|113475495|ref|YP_721556.1| histone deacetylase superfamily protein [Trichodesmium erythraeum
IMS101]
gi|110166543|gb|ABG51083.1| histone deacetylase superfamily [Trichodesmium erythraeum IMS101]
Length = 303
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 100/191 (52%), Gaps = 3/191 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
VGGT+ LAL+ G + N GG HHA + G GFC + D+++ +++ + + +IV
Sbjct: 94 VGGTILTAQLALKHGLACNTAGGTHHAFPSYGSGFCIFNDLAIATRVMQKLGLVEKVLIV 153
Query: 281 DLDAHQGNGYEKDFMNETRIFI--METCITSKAKEAIR-CRIELAPYTEDQHYLEKIEAG 337
DLD HQG+G F ++ +F M I +++ + + L +D+ YL+ +
Sbjct: 154 DLDVHQGDGTAWIFQDDPTVFTFSMHCGINFPSRKQVSDLDVPLPEGMDDELYLQTLAQH 213
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L L PD+++Y+AG D ++D LG LA++ GI RR+ V + P+ +
Sbjct: 214 LPYLLSEVKPDLVLYDAGVDTHIHDALGKLALTDTGIFRREMQVLSTCLGKGYPVASVIG 273
Query: 398 GGYLKQTARII 408
GGY K ++
Sbjct: 274 GGYTKDMNSLV 284
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL+ G + N GG HHA + G GFC + D+++ +++ + + +IVDL
Sbjct: 96 GTILTAQLALKHGLACNTAGGTHHAFPSYGSGFCIFNDLAIATRVMQKLGLVEKVLIVDL 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|407368493|ref|ZP_11115025.1| histone deacetylase superfamily protein [Pseudomonas mandelii JR-1]
Length = 306
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 138/299 (46%), Gaps = 24/299 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F P D + F L H LV++ +++ P+
Sbjct: 2 PLPLIYHEDYSPEF-------PADHRFPMDKFRLLRDH----LVDSGLTRDADLLRPELC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAG 228
E L +AH Y++ + +S E + +P + + R +R VGG+L A
Sbjct: 51 PPEILALAHDAAYIER----YMSGELSREDQRRLGLP--WSEALARRTVRA-VGGSLLAA 103
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
AL G + ++ GG HHA GFC + D++++ L +S ++ +I D D HQG+
Sbjct: 104 EQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHFLLESGRVNRVLIFDCDVHQGD 163
Query: 289 GYEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRS 344
G + N + E ++ E+ I L D YL+ ++ L L
Sbjct: 164 GTARILHNTPEAVTVSLHCEKNFPARKAES-DWDIPLPKGMGDADYLKVVDDALNYLLPL 222
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P+V + GGY K
Sbjct: 223 YQPDLVLYDAGVDVHKDDALGYLKLTDEGVAARDESVMRHCLGRDIPVVGVIGGGYSKD 281
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ L +S ++ +I D
Sbjct: 98 GSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHFLLESGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|156975305|ref|YP_001446212.1| hypothetical protein VIBHAR_03035 [Vibrio harveyi ATCC BAA-1116]
gi|156526899|gb|ABU71985.1| hypothetical protein VIBHAR_03035 [Vibrio harveyi ATCC BAA-1116]
Length = 307
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 138/300 (46%), Gaps = 15/300 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y+ L + H + K+ H L + + L + Q +P +S
Sbjct: 3 PLIYHPIYSQ--LDLPEGHRYPIMKYHH----LHQAVLEKLANESWGEQVEFFQPTSLSV 56
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+++ H+E+Y+ L VA + + + + R + G L A A
Sbjct: 57 DEVKRVHSEEYVDLL-----VAGAMPAAKMRRIGFPWSEALITRTLTSTAGTVLTAE-KA 110
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G +I++ GG+HHA + G GFC + D+++ K + + + MI+D D H G+G
Sbjct: 111 LEHGIAIHLSGGYHHAHKDFGSGFCLFNDLAIAAKHMLDHEHVDKVMIIDSDVHHGDGTA 170
Query: 292 KDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
+E I + C + K + L T+D+ +L + ++ ++ PD
Sbjct: 171 TLCKDEADIITLSFHCDKNFPARKPDSDLDVPLRRDTDDETFLMTFKEVVQMAINLHRPD 230
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
+++Y+AG D+ +D LG +S +GI RD + ++R +P+ + GGY + A ++
Sbjct: 231 MVIYDAGVDIHTDDELGYFNVSTKGIFERDRFLMQLMKDRGIPVAAVVGGGYRSEHADLV 290
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ AL G +I++ GG+HHA + G GFC + D+++ K + + + MI+D
Sbjct: 102 GTVLTAEKALEHGIAIHLSGGYHHAHKDFGSGFCLFNDLAIAAKHMLDHEHVDKVMIIDS 161
Query: 64 DAHQ 67
D H
Sbjct: 162 DVHH 165
>gi|212557470|gb|ACJ29924.1| Histone deacetylase/AcuC/AphA family protein [Shewanella
piezotolerans WP3]
Length = 306
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 90/183 (49%), Gaps = 3/183 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
V GT A AL G +I++ GG+HHA G GFC + D++ + + I +I
Sbjct: 96 VAGTQLACLKALEYGCAIHLSGGYHHAHHRFGSGFCIFNDLTYAAQQALKQPGIDNVLIF 155
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAG 337
D D HQG+G +I K+ IEL T D++YLE +
Sbjct: 156 DCDVHQGDGTATTASAFDKIITCSIHCQHNFPARKQQSNYDIELPRGTTDKYYLETVSQT 215
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L +R PD+I+Y+AG D+ +D LG IS +GI RD++V +A ++PI +
Sbjct: 216 LSYLIRLHQPDLIIYDAGVDIHTDDNLGYFNISTEGIFARDKVVIQQAYSAKIPIACVIG 275
Query: 398 GGY 400
GGY
Sbjct: 276 GGY 278
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A AL G +I++ GG+HHA G GFC + D++ + + I +I D
Sbjct: 98 GTQLACLKALEYGCAIHLSGGYHHAHHRFGSGFCIFNDLTYAAQQALKQPGIDNVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|167035768|ref|YP_001670999.1| histone deacetylase superfamily protein [Pseudomonas putida GB-1]
gi|166862256|gb|ABZ00664.1| histone deacetylase superfamily [Pseudomonas putida GB-1]
Length = 304
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 141/302 (46%), Gaps = 22/302 (7%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F E P D ++ + ++LV++ T ++ P
Sbjct: 2 PLPLIYHEDYSPEF-PAEHRFPMDK----------FRLLRDHLVDSGLTTDQALLRPDIC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
+ L +AH Y++ N E + +P + + R +R VGG+L
Sbjct: 51 PNDILALAHDRSYIERY---MNGELSREDQRRLGLP--WSEALARRTVRA-VGGSLLTAE 104
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
+AL+ G + ++ GG HHA GFC + D++++ + L + + +I D D HQG+G
Sbjct: 105 MALQHGIACHLAGGTHHAHYDHPAGFCIFNDLAVISRYLLAAGRVHRVLIFDCDVHQGDG 164
Query: 290 YEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSF 345
+ +++T I + + A + + I L D YL+ ++ L L +
Sbjct: 165 TAR-ILHDTPEAITVSLHCEQNFPARKAQSDWDIPLPRGMGDTAYLKVVDDALNYLLPLY 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PD+++Y+AG DV +D LG L ++ G+ RDE V R +P+V + GGY K A
Sbjct: 224 QPDLVLYDAGVDVHKDDALGYLQLTDAGVAARDEAVLRHCLGRDIPVVGVIGGGYSKDRA 283
Query: 406 RI 407
+
Sbjct: 284 AL 285
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L +AL+ G + ++ GG HHA GFC + D++++ + L + + +I D
Sbjct: 98 GSLLTAEMALQHGIACHLAGGTHHAHYDHPAGFCIFNDLAVISRYLLAAGRVHRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|393765147|ref|ZP_10353737.1| histone deacetylase superfamily protein [Methylobacterium sp. GXF4]
gi|392729439|gb|EIZ86714.1| histone deacetylase superfamily protein [Methylobacterium sp. GXF4]
Length = 306
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 133/292 (45%), Gaps = 21/292 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PI + P Y L H F +K+ + L AK + + P+ +
Sbjct: 4 PIAFHPAYE---SSLPAGHRFPMRKYGLLAETLV---------AKGLAPLGFVTPELATA 51
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
L+ AH Y+ ++ VA ++ + +P V +R R VGGTL A LA
Sbjct: 52 GILVNAHDPAYVAAV---LGVAVPRDIERAIGLP---VDASLVRRSRASVGGTLLAARLA 105
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G + + GG HHA +G GFC D+++ + L ++ ++VD D HQG+G
Sbjct: 106 LAEGLAGSAAGGSHHARRLQGAGFCVLNDVAVAARTLQAEGAVRRVLVVDCDVHQGDGTA 165
Query: 292 KDFMNETRIFIMET-CITSKAKEAIRCRIE--LAPYTEDQHYLEKIEAGLERSLRSFCPD 348
+F + C + + I ++ L +D YLE + A L L + PD
Sbjct: 166 DCLALWPDLFTLSIHCENNYPAQKIAGDLDIGLPDRLDDAGYLEVLRARLPPLLDALVPD 225
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
+I YNAG D +D LG L +S G++ RD V +AR R +P+V + GGY
Sbjct: 226 LIFYNAGVDPHRDDRLGRLCLSDDGLLARDRFVVAQARARLIPLVAVIGGGY 277
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 23 GGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
GG HHA +G GFC D+++ + L ++ ++VD D HQ
Sbjct: 116 GGSHHARRLQGAGFCVLNDVAVAARTLQAEGAVRRVLVVDCDVHQ 160
>gi|431928586|ref|YP_007241620.1| deacetylase [Pseudomonas stutzeri RCH2]
gi|431826873|gb|AGA87990.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas stutzeri RCH2]
Length = 306
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 138/304 (45%), Gaps = 34/304 (11%)
Query: 112 PIVYRPEYNV-----HFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEP 166
P+V+ +Y+ H F +EK ++ + ++LV T ++ P
Sbjct: 4 PLVFHDDYSPPLPPGHRFPMEK----------------FRLLRDHLVALGLTTDATLLRP 47
Query: 167 QEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLE 226
+ + L +AH Y+ ++ E+ L +P + + R +R VGG+L
Sbjct: 48 ELCGHDILALAHDPDYVA--RYCSGEMGRDELRRL-GLP--WSPELAQRTVRA-VGGSLL 101
Query: 227 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 286
A AL+ G + ++ GG HHA GFC + D++++ L +S + +I D D HQ
Sbjct: 102 AAEQALQHGLACHLAGGTHHAHRDHASGFCIFNDLAVIALYLLESGRVGRVLIFDCDVHQ 161
Query: 287 GNGYEKDFMN-----ETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERS 341
G+G + N + + T KA I L P D+ YL+ + L
Sbjct: 162 GDGTARILENIPDAVTVSLHCEKNFPTRKAHS--DWDIPLPPGMGDEAYLKVVHDTLNYL 219
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYL 401
L + PD+++Y+AG DV +D LGLL++S G+ RD V R +P+V L GGY
Sbjct: 220 LPIYQPDLVLYDAGVDVHRDDALGLLSLSDAGLAARDSAVLDHCLGRDIPVVGLIGGGYD 279
Query: 402 KQTA 405
K A
Sbjct: 280 KDRA 283
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL+ G + ++ GG HHA GFC + D++++ L +S + +I D
Sbjct: 98 GSLLAAEQALQHGLACHLAGGTHHAHRDHASGFCIFNDLAVIALYLLESGRVGRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|424925046|ref|ZP_18348407.1| Deacetylase [Pseudomonas fluorescens R124]
gi|404306206|gb|EJZ60168.1| Deacetylase [Pseudomonas fluorescens R124]
Length = 306
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 140/300 (46%), Gaps = 26/300 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F P D + F L H LV++ +++ P+
Sbjct: 2 PLPLIYHEDYSPEF-------PADHRFPMDKFRLLRDH----LVDSGLTRDADLLRPEIC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVP-NYFVQKCYLRPMRYHVGGTLEA 227
+ L +AH +Y++ + +S E + +P N + + +R VGG++ A
Sbjct: 51 PNDILALAHDRRYIE----RYMSGELSREDQRRLGLPWNEALARRTVRA----VGGSILA 102
Query: 228 GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQG 287
AL G + ++ GG HHA GFC + D++++ L QS ++ +I D D HQG
Sbjct: 103 AEKALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAIISHYLLQSGRVNRVLIFDCDVHQG 162
Query: 288 NGYEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLR 343
+G + + +T I + K A + I L D YL+ ++ L L
Sbjct: 163 DGTAR-ILQDTPEAITVSLHCEKNFPARKAESDWDIPLPKGMGDADYLQVVDDTLNYLLP 221
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P+V + GGY K
Sbjct: 222 LYQPDLVLYDAGVDVHKDDALGYLQLTDEGVAARDESVMRHCLGRDIPVVGVIGGGYSKD 281
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ A AL G + ++ GG HHA GFC + D++++ L QS ++ +I D
Sbjct: 98 GSILAAEKALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAIISHYLLQSGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|257482169|ref|ZP_05636210.1| histone deacetylase family protein [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|422597283|ref|ZP_16671558.1| histone deacetylase family protein [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|422682025|ref|ZP_16740292.1| histone deacetylase family protein [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|330987575|gb|EGH85678.1| histone deacetylase family protein [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331011366|gb|EGH91422.1| histone deacetylase family protein [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
Length = 305
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 137/296 (46%), Gaps = 22/296 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y +Y+ F + P D ++ + +YLV++ + ++ P+
Sbjct: 4 PLIYHEDYSPDFPADHRF-PMDK----------FRLLRDYLVDSGLTSDVQLMRPELCPA 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ L +AH Y+ N E + +P + + R +R VGG+L A
Sbjct: 53 DILALAHDPSYISRY---LNGDLSREDQRRLGLP--WSEALARRTVRA-VGGSLLTAEQA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L+ G + ++ GG HHA GFC + D++++ + L QS + +I D D HQG+G
Sbjct: 107 LKHGMACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQGDGTA 166
Query: 292 KDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ + +T I + K A + + I L D YL ++ L L + P
Sbjct: 167 R-ILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVVDDLLNYLLPFYKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
D+++Y+AG DV +D LG L ++ QG+ RDE V R +P++ + GGY K
Sbjct: 226 DLVLYDAGVDVHKDDALGYLQLTDQGVANRDEAVLRHCLNRDIPVMGVIGGGYSKD 281
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L AL+ G + ++ GG HHA GFC + D++++ + L QS + +I D
Sbjct: 98 GSLLTAEQALKHGMACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|241663209|ref|YP_002981569.1| histone deacetylase superfamily protein [Ralstonia pickettii 12D]
gi|240865236|gb|ACS62897.1| histone deacetylase superfamily [Ralstonia pickettii 12D]
Length = 335
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 116/244 (47%), Gaps = 15/244 (6%)
Query: 165 EPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGT 224
E ++ LL+AHT +Y+ ++ A P V++ R G T
Sbjct: 57 EAPRADDDALLLAHTTEYVCAVSAGRLDPARQREIGFPWSPE-MVERS-----RRSAGAT 110
Query: 225 LEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST-----AMI 279
+ A AL G ++N+ GG HHA KGGGFC + D ++ + + Q +S T I
Sbjct: 111 MAACDAALADGIAVNLAGGTHHAYADKGGGFCVFNDAAIASRWI-QRQSGRTPGDFPVAI 169
Query: 280 VDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEA 336
VDLD HQGNG ++ +F + KEA + L D+ YL+ +
Sbjct: 170 VDLDVHQGNGTASILRDDATVFTLSLHGEKNYPFRKEASDLDVGLHDGCGDEDYLQALTG 229
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
L+ F P +I+Y AG D D LG L ++ QG+ RRD+ VF A +RR+P+ +
Sbjct: 230 ALDILAGRFKPQLIIYLAGADPHEGDRLGRLKLTLQGLARRDQEVFDFAYQRRIPVAVTM 289
Query: 397 SGGY 400
+GGY
Sbjct: 290 AGGY 293
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST-----AM 59
T+ A AL G ++N+ GG HHA KGGGFC + D ++ + + Q +S T
Sbjct: 110 TMAACDAALADGIAVNLAGGTHHAYADKGGGFCVFNDAAIASRWI-QRQSGRTPGDFPVA 168
Query: 60 IVDLDAHQ 67
IVDLD HQ
Sbjct: 169 IVDLDVHQ 176
>gi|374704111|ref|ZP_09710981.1| putative histone deacetylase family protein [Pseudomonas sp. S9]
Length = 305
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 143/317 (45%), Gaps = 52/317 (16%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P+Y+ F H F +K++ + ++L +++ ++ + + P
Sbjct: 4 PLVYHPDYSPEF---PAEHRFPMEKFRLLHDHL--------IDSGVVSDEELHSPALCPN 52
Query: 172 EQLLIAHTEKYLK---------------SLKWSFNVAAISEVCPLVAVPNYFVQKCYLRP 216
E L +AH Y++ L WS AA+++ R
Sbjct: 53 EILALAHCPDYIERYMSGELPHADQRRLGLPWS---AALAQ-----------------RT 92
Query: 217 MRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST 276
+R VGG++ LAL G + ++ GG HHA GFC + D++++ + L + +
Sbjct: 93 VRA-VGGSILTAELALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISRYLLAAGKVQR 151
Query: 277 AMIVDLDAHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLE 332
+I D D HQG+G + + +T I + K A + I L D+ YL+
Sbjct: 152 VLIFDCDVHQGDGTAR-LLADTPEAITVSLHCEKNFPARKADSDWDIPLPMGMGDRDYLQ 210
Query: 333 KIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPI 392
++ L L + PD+++Y+AG DV +D LG L ++ QG+ RD+ V R +P+
Sbjct: 211 VVDDALNYLLPLYQPDLVLYDAGVDVHKDDALGYLKLTDQGVATRDKAVLQHCVGRNIPV 270
Query: 393 VMLTSGGYLKQTARIIA 409
+ + GGY K + A
Sbjct: 271 MGVIGGGYDKDRKALAA 287
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ LAL G + ++ GG HHA GFC + D++++ + L + + +I D
Sbjct: 98 GSILTAELALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISRYLLAAGKVQRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|32477270|ref|NP_870264.1| histone deacetylase [Rhodopirellula baltica SH 1]
gi|417302473|ref|ZP_12089573.1| histone deacetylase/AcuC/AphA family protein [Rhodopirellula
baltica WH47]
gi|32447821|emb|CAD77339.1| conserved hypothetical protein-putative histone deacetylase
[Rhodopirellula baltica SH 1]
gi|327541213|gb|EGF27757.1| histone deacetylase/AcuC/AphA family protein [Rhodopirellula
baltica WH47]
Length = 305
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 144/318 (45%), Gaps = 30/318 (9%)
Query: 119 YNVHF-FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIA 177
Y HF L + H F K++ + + VE++ D +I PQ ++EQLL
Sbjct: 5 YTDHFDLPLPEGHRFPMSKYRLLRQRV--------VESEHHRDDTLIVPQAATDEQLLHC 56
Query: 178 HTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWS 237
HT Y++ ++ + + + P + K R R G T+ A AL G S
Sbjct: 57 HTPDYVQRVQ---SGTLTKQEIRRIGFP--WSAKMVERSRRS-TGATISAARAALDEGIS 110
Query: 238 INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNE 297
N+ GG HHA +G G+C + D ++ ++ L I A I+DLD HQGNG +
Sbjct: 111 ANLAGGTHHAFAGEGEGYCVFNDAAVAIRTLQSEGLIQRAAIIDLDVHQGNGTASILKDV 170
Query: 298 TRIFIMETCITSKAKE-AIR-----CRIELAPYTEDQHY---LEKIEAGLER-SLRSFCP 347
+F TC K +R + L T D Y L + A LE+ S
Sbjct: 171 PSVF---TCSVHGVKNFPLRKMPSDLDVSLPDGTGDDDYCDALRSVLAKLEKHQSESGQF 227
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D+++Y AG D ND LG L+++ G+ RRDELV +P+ + +GGY + I
Sbjct: 228 DLVIYLAGADPYKNDRLGRLSLTMDGLRRRDELVLQWCHHNDLPVAIAMAGGYSVEVKEI 287
Query: 408 --IADSILNLADLGLISR 423
I L++A + +SR
Sbjct: 288 VDIHSQTLHIAKVWSLSR 305
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
T+ A AL G S N+ GG HHA +G G+C + D ++ ++ L I A I+DL
Sbjct: 96 ATISAARAALDEGISANLAGGTHHAFAGEGEGYCVFNDAAVAIRTLQSEGLIQRAAIIDL 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|289623985|ref|ZP_06456939.1| histone deacetylase family protein [Pseudomonas syringae pv.
aesculi str. NCPPB 3681]
gi|289648772|ref|ZP_06480115.1| histone deacetylase family protein [Pseudomonas syringae pv.
aesculi str. 2250]
gi|422584154|ref|ZP_16659267.1| histone deacetylase family protein [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|422605128|ref|ZP_16677143.1| histone deacetylase family protein [Pseudomonas syringae pv. mori
str. 301020]
gi|298156609|gb|EFH97704.1| deacetylase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
gi|330868974|gb|EGH03683.1| histone deacetylase family protein [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330888785|gb|EGH21446.1| histone deacetylase family protein [Pseudomonas syringae pv. mori
str. 301020]
Length = 305
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 137/296 (46%), Gaps = 22/296 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y +Y+ F + P D ++ + +YLV++ + ++ P+
Sbjct: 4 PLIYHEDYSPDFPADHRF-PMDK----------FRLLRDYLVDSGLTSDVQLMRPELCPA 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ L +AH Y+ N E + +P + + R +R VGG+L A
Sbjct: 53 DILALAHDPSYISRY---LNGDLSREDQRRLGLP--WSEALARRTVRA-VGGSLLTAEQA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L+ G + ++ GG HHA GFC + D++++ + L QS + +I D D HQG+G
Sbjct: 107 LKHGMACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQGDGTA 166
Query: 292 KDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ + +T I + K A + + I L D YL ++ L L + P
Sbjct: 167 R-ILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVVDDLLNYLLPFYKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
D+++Y+AG DV +D LG L ++ QG+ RDE V R +P++ + GGY K
Sbjct: 226 DLVLYDAGVDVHKDDALGYLQLTDQGVANRDEAVLRHCLSRDIPVMGVIGGGYSKD 281
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L AL+ G + ++ GG HHA GFC + D++++ + L QS + +I D
Sbjct: 98 GSLLTAEQALKHGMACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|427732319|ref|YP_007078556.1| deacetylase [Nostoc sp. PCC 7524]
gi|427368238|gb|AFY50959.1| deacetylase, histone deacetylase/acetoin utilization protein
[Nostoc sp. PCC 7524]
Length = 305
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 134/301 (44%), Gaps = 22/301 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PI+Y P+Y L + H F K++ ++ L +L + T+ N
Sbjct: 4 PIIYHPDY---VAPLPEGHRFPMPKFQKLYELLLTEGVAHLEQFHTPTRPN--------S 52
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
E + + HT Y++ + + + A + L P + C VGGT+ L
Sbjct: 53 ELIELVHTPDYVQGYCEGTLDPKAQRRIG-LPWSPALANRTCVA------VGGTILTAQL 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL +G + N GG HHA G GFC + D+++ ++L + + +IVDLD HQG+G
Sbjct: 106 ALSQGLACNTAGGTHHAFPCYGSGFCIFNDLAIASRVLQKQGLVQKILIVDLDVHQGDGT 165
Query: 291 EKDFMNETRIFIMET-CITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
F ++ +F C + K+ + L ED YL+ + + L L P
Sbjct: 166 AFIFQDDDSVFTFSMHCEVNFPGTKQQSDLDVPLPVGMEDDAYLQTLASYLPDLLSEVKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D+++Y+AG D + D LG LA++ GI RR+ V P+ + GGY +
Sbjct: 226 DLVLYDAGVDPHIGDRLGKLALTDTGIFRREMQVLSTCISAGYPVACVIGGGYADDLKSL 285
Query: 408 I 408
+
Sbjct: 286 V 286
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL +G + N GG HHA G GFC + D+++ ++L + + +IVDL
Sbjct: 98 GTILTAQLALSQGLACNTAGGTHHAFPCYGSGFCIFNDLAIASRVLQKQGLVQKILIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|88809136|ref|ZP_01124645.1| putative histone deacetylase/AcuC/AphA family protein
[Synechococcus sp. WH 7805]
gi|88787078|gb|EAR18236.1| putative histone deacetylase/AcuC/AphA family protein
[Synechococcus sp. WH 7805]
Length = 304
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 3/183 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
VGGTL LALR G + ++ GG HHA G GFC + D+++ ++L + + ++V
Sbjct: 96 VGGTLLTARLALRHGLACHLAGGTHHAFPDFGSGFCIFNDLAVCARVLIEQDGLQRVLVV 155
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAG 337
DLD HQG+ F + R+F S K+ + L ED YL+ I
Sbjct: 156 DLDVHQGDATALIFSGDERVFTFSAHAASNFPSRKQVSDLDLSLRDGLEDWDYLQTIGDH 215
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L L P +++YNAG D +D LG L ++ G+++RD LV R +P+ +
Sbjct: 216 LPELLDRQRPQLVLYNAGVDPHRDDRLGRLCLTNLGLLQRDHLVLDACLRRGIPVASVIG 275
Query: 398 GGY 400
GGY
Sbjct: 276 GGY 278
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL LALR G + ++ GG HHA G GFC + D+++ ++L + + ++VDL
Sbjct: 98 GTLLTARLALRHGLACHLAGGTHHAFPDFGSGFCIFNDLAVCARVLIEQDGLQRVLVVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|398980080|ref|ZP_10688815.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM25]
gi|398135039|gb|EJM24169.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM25]
Length = 306
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 139/300 (46%), Gaps = 26/300 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F P D + F L H LV++ ++++ P+
Sbjct: 2 PLPLIYHEDYSPEF-------PADHRFPMDKFRLLRDH----LVDSGLTRDEDLLRPELC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVP-NYFVQKCYLRPMRYHVGGTLEA 227
+ L +AH Y++ + +S E + +P N + + +R VGG++ A
Sbjct: 51 PADILALAHDRGYIER----YMSGELSREDQRRLGLPWNEALARRTVRA----VGGSILA 102
Query: 228 GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQG 287
AL G + ++ GG HHA GFC + D++++ L QS ++ +I D D HQG
Sbjct: 103 AEKALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAIISHYLLQSGRVNRVLIFDCDVHQG 162
Query: 288 NGYEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+G + N + E ++ E+ I L D YL+ ++ L L
Sbjct: 163 DGTARILHNTPEAITVSLHCEKNFPARKAES-DWDIPLPNGMGDADYLKVVDDALNYLLP 221
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P+V + GGY K
Sbjct: 222 LYQPDLVLYDAGVDVHKDDALGYLQLTDEGVAARDESVMRHCLGRDIPVVGVIGGGYSKD 281
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ A AL G + ++ GG HHA GFC + D++++ L QS ++ +I D
Sbjct: 98 GSILAAEKALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAIISHYLLQSGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|304570490|ref|YP_001104.2| histone deacetylase [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
Length = 302
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 138/294 (46%), Gaps = 22/294 (7%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
+VY P+YN+ H F ++K++ +++ + + ++K ++ I +P +
Sbjct: 10 LVYHPDYNLDL----GPHVFPARKYQMVYDLVKR-------DSK-LSNLYIYKPDLAKTK 57
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
L + HT+++L +S N+ ++ L + K + VGGT+ + L
Sbjct: 58 DLSLVHTQEFLDDF-FSLNITERTQYSELP------LTKQIVHSFVLAVGGTILSMELTQ 110
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
+ + +IGGGFHH+ + GFC D ++ KL + + +DLD HQGNG
Sbjct: 111 KYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIASKLYQKEYPDKKILFIDLDLHQGNGNSF 170
Query: 293 DFMNETRIFI--METCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
F N+ +F M KE I L D+ YLE +E L + F PD+I
Sbjct: 171 IFQNDPDVFTFSMHQENLYPKKEKSDLDISLEEGIGDKEYLELLEKSLRKIESDFKPDLI 230
Query: 351 VYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE-RRVPIVMLTSGGYLKQ 403
Y AG D D LG L ++ QG+ +RD++V A +V+L +GGY K
Sbjct: 231 FYIAGADPFEGDSLGDLKLTFQGLRKRDQIVRDFAYSLNDTRVVILPAGGYAKD 284
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ + L + + +IGGGFHH+ + GFC D ++ KL + + +DL
Sbjct: 101 GTILSMELTQKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIASKLYQKEYPDKKILFIDL 160
Query: 64 DAHQ 67
D HQ
Sbjct: 161 DLHQ 164
>gi|296283064|ref|ZP_06861062.1| hypothetical protein CbatJ_05560 [Citromicrobium bathyomarinum
JL354]
Length = 294
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 94/194 (48%), Gaps = 8/194 (4%)
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 281
GGT A LA+R G++ N G HHA G GFC + D+++ L +IVD
Sbjct: 84 GGTWLAARLAMRHGYAANSAAGSHHALYDTGAGFCVFNDLAVCANRLIAQGDARRVLIVD 143
Query: 282 LDAHQGNGYEKDFMNETRIFIM-----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEA 336
D HQG+G +F + + KA+ ++ + L T D YL+ ++
Sbjct: 144 CDVHQGDGTAALTAGREDVFTLSLHAEKNFPVRKARSSLD--VALPDGTSDADYLDVLDT 201
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
L L F PDI++Y AG D ND LG LA++ +G+ RRD V R R +PI
Sbjct: 202 HLPHVLDEFAPDIVLYQAGVDPHENDKLGRLALTDEGLERRDRYVVETVRGRDLPIASAL 261
Query: 397 SGGYLKQTARIIAD 410
GGY R++A+
Sbjct: 262 GGGY-GTDPRVVAE 274
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A LA+R G++ N G HHA G GFC + D+++ L +IVD
Sbjct: 85 GTWLAARLAMRHGYAANSAAGSHHALYDTGAGFCVFNDLAVCANRLIAQGDARRVLIVDC 144
Query: 64 DAHQ 67
D HQ
Sbjct: 145 DVHQ 148
>gi|433658231|ref|YP_007275610.1| Histone deacetylase [Vibrio parahaemolyticus BB22OP]
gi|432508919|gb|AGB10436.1| Histone deacetylase [Vibrio parahaemolyticus BB22OP]
Length = 302
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 140/301 (46%), Gaps = 21/301 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y+ +L + H + K+++++ + + V+A+++ EPQ ++
Sbjct: 3 PLIYHPIYSK--LELPEGHRYPIMKYQYLYEEVRRD-----VQAEWV---QFFEPQALTI 52
Query: 172 EQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
E + H Y+ L + + A + + + + + GTL
Sbjct: 53 EAIKRVHDADYVDLLVQGNMPAAKMRRI-------GFPWSEALITRTLTSAAGTLLTAEK 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G ++++ GG+HHA + G GFC + D+ + K + ++ + +I+D D H G+G
Sbjct: 106 ALEHGIALHLSGGYHHAHKDFGSGFCLFNDLVIAAKHMLDNEHVDKILIIDSDVHHGDGT 165
Query: 291 EKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
E I + C + K + LA T+D+ +L + +E +L P
Sbjct: 166 ATLCQEEPDIVTLSFHCDKNFPARKPQSDLDVPLAKGTDDETFLMTFKEVVEMALNFHRP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D+++Y+AG D+ ND LG +S Q I RD +F + + R +P+ + GGY A +
Sbjct: 226 DMVIYDAGVDIHQNDELGYFDVSTQAIFERDRFLFQRMKNRGIPVAAVVGGGYRTNHADL 285
Query: 408 I 408
+
Sbjct: 286 V 286
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL AL G ++++ GG+HHA + G GFC + D+ + K + ++ + +I+D
Sbjct: 98 GTLLTAEKALEHGIALHLSGGYHHAHKDFGSGFCLFNDLVIAAKHMLDNEHVDKILIIDS 157
Query: 64 DAHQ 67
D H
Sbjct: 158 DVHH 161
>gi|88801602|ref|ZP_01117130.1| Histone deacetylase superfamily protein [Polaribacter irgensii
23-P]
gi|88782260|gb|EAR13437.1| Histone deacetylase superfamily protein [Polaribacter irgensii
23-P]
Length = 300
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 113/253 (44%), Gaps = 9/253 (3%)
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
T++N EP+ + + H +Y L N+ + + P + R M
Sbjct: 39 TEENFFEPEIPNYKHFFTVHDPEYFFDL---LNITLSQKAARKIGFP--LSEVLIAREMM 93
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
GT++A A++ G ++NI GG HHA +G FC D ++ K L Q +
Sbjct: 94 I-ADGTMKASEYAIKNGIAMNIAGGTHHAFSNRGEAFCMLNDQAIGAKYLQQKGLADKIL 152
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIE 335
IVDLD HQGNG + F N+ +F S KEA I L T+D YL ++
Sbjct: 153 IVDLDVHQGNGTAEIFQNDRSVFTFSMHGKSNYPFVKEASDLDIALENNTKDATYLTLLK 212
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
L + ++ PD I Y G DV+ +D LG L ++ G RD V + ++P++
Sbjct: 213 ETLPKLIQQEKPDFIYYLCGVDVIESDKLGKLDLTIAGCKERDNFVIQTCYDLKIPVMCS 272
Query: 396 TSGGYLKQTARII 408
GGY I+
Sbjct: 273 MGGGYSPDVNTIV 285
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++A A++ G ++NI GG HHA +G FC D ++ K L Q +IVDL
Sbjct: 97 GTMKASEYAIKNGIAMNIAGGTHHAFSNRGEAFCMLNDQAIGAKYLQQKGLADKILIVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|148980163|ref|ZP_01815914.1| deacetylase [Vibrionales bacterium SWAT-3]
gi|145961381|gb|EDK26688.1| deacetylase [Vibrionales bacterium SWAT-3]
Length = 306
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/310 (26%), Positives = 134/310 (43%), Gaps = 34/310 (10%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIF---------NYLWKHIFNYLVEAKFITQDN 162
P++Y P Y+ L + H + K++ + + LWK++F
Sbjct: 3 PLIYHPIYSQ--LPLPEGHRYPINKYQLLHSAVEALMDSDPLWKNMFE------------ 48
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHV 221
+ EP+ VS EQ+ H Y+ L S A + + + + + Y
Sbjct: 49 VFEPKPVSVEQVKQVHDSDYVDLLVSGSLPAAKMRRI-------GFPWSEQLIERTLYSS 101
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 281
GGT A +A+ G +I++ GG+HHA G GFC D+ L K + + +IVD
Sbjct: 102 GGTCLAADMAIESGLAIHLSGGYHHAHHDFGSGFCLLNDLVLAAKHALTFEQVDKVLIVD 161
Query: 282 LDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGL 338
D H G+G I + C + K + L+ TED+ +L E
Sbjct: 162 SDVHHGDGTATLCQESDEIITLSFHCDKNFPARKPLSDLDVPLSRETEDEEFLRCFEQVT 221
Query: 339 ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSG 398
+ ++ PD+I+Y+AG D+ +D LG L +S QGI RD + A+ +P+ + G
Sbjct: 222 KLAIAHHQPDLIIYDAGVDIHQDDELGYLNVSEQGIFERDCFMINLAKSESIPMACVVGG 281
Query: 399 GYLKQTARII 408
GY Q ++
Sbjct: 282 GYRTQHQDLV 291
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A +A+ G +I++ GG+HHA G GFC D+ L K + + +IVD
Sbjct: 103 GTCLAADMAIESGLAIHLSGGYHHAHHDFGSGFCLLNDLVLAAKHALTFEQVDKVLIVDS 162
Query: 64 DAHQ 67
D H
Sbjct: 163 DVHH 166
>gi|427718250|ref|YP_007066244.1| histone deacetylase [Calothrix sp. PCC 7507]
gi|427350686|gb|AFY33410.1| Histone deacetylase [Calothrix sp. PCC 7507]
Length = 310
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 130/300 (43%), Gaps = 20/300 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY P+Y L H F K++ ++ L + A+F T P+
Sbjct: 10 PIVYHPDY---IAPLPPGHRFPMSKFRQLYELLLGDGVAQI--AQFHT------PERPPT 58
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ + + HT Y+++ A L P + C VGGT+ LA
Sbjct: 59 DLIELVHTPDYVQAYCEGTLDAKAQRRIGLPWSPALANRTCVA------VGGTILTAKLA 112
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L +G + N GG HHA + G GFC + D+++ ++L + + +IVDLD HQG+G
Sbjct: 113 LSQGLACNTAGGTHHAFPSYGSGFCIFNDLAIACRVLQKIGLVHKILIVDLDVHQGDGTA 172
Query: 292 KDFMNETRIFIMET-CITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
F ++ +F C + K+ + L ED YL+ + L L PD
Sbjct: 173 FIFQDDESVFTFSMHCEVNFPGTKQKSDLDVPLTVGMEDDTYLQTLANYLPDLLSEIKPD 232
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
+I Y+AG D + D LG LA++ GI RR+ V P+ + GGY ++
Sbjct: 233 LIFYDAGVDPHIGDRLGKLALTDTGIYRREMQVLSTCVSAGYPVACVIGGGYADDLKSLV 292
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL +G + N GG HHA + G GFC + D+++ ++L + + +IVDL
Sbjct: 104 GTILTAKLALSQGLACNTAGGTHHAFPSYGSGFCIFNDLAIACRVLQKIGLVHKILIVDL 163
Query: 64 DAHQ 67
D HQ
Sbjct: 164 DVHQ 167
>gi|291233233|ref|XP_002736558.1| PREDICTED: predicted protein-like, partial [Saccoglossus
kowalevskii]
Length = 315
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 140/310 (45%), Gaps = 22/310 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIV+ Y + L H F +K++ ++ L +E I + ++ P + S+
Sbjct: 20 PIVHHEGYVCY---LPPGHRFQMRKFERLYQIL--------LEQNVICERQVLMPVKASK 68
Query: 172 EQLLIA-HTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+ L A HT+ Y++ + V V +C RY GGT+
Sbjct: 69 DLLTEAVHTKDYIEDFFNGWTDEKAQRKTGFVWSEG-LVSRC-----RYETGGTVLTAEA 122
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL+ G + + GG HHA G G+C + DI++ K L +S +++DLD HQG+G
Sbjct: 123 ALQCGLACSTAGGTHHAFPAYGAGYCLFNDIAVAAKYLILRNKVSRVLVIDLDVHQGDGT 182
Query: 291 EKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
F ++ +F K+ I L T + Y++ I+ L ++F P
Sbjct: 183 AFIFKDDPAVFTFSVHCGKNFPLFKQQSDLDISLNCGTGNADYMDVIQHNLPWIFQTFRP 242
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D+++Y+AG D D LG LA++ +G+ +RD V + P L GGY K ++
Sbjct: 243 DLVIYDAGVDPHKEDLLGQLALTDEGLFKRDYWVINYSITCGCPCACLIGGGYDKSVDKL 302
Query: 408 -IADSILNLA 416
+ SIL+ A
Sbjct: 303 ALRHSILHRA 312
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ AL+ G + + GG HHA G G+C + DI++ K L +S +++DL
Sbjct: 115 GTVLTAEAALQCGLACSTAGGTHHAFPAYGAGYCLFNDIAVAAKYLILRNKVSRVLVIDL 174
Query: 64 DAHQ 67
D HQ
Sbjct: 175 DVHQ 178
>gi|119510696|ref|ZP_01629824.1| histone deacetylase/AcuC/AphA family protein [Nodularia spumigena
CCY9414]
gi|119464650|gb|EAW45559.1| histone deacetylase/AcuC/AphA family protein [Nodularia spumigena
CCY9414]
Length = 305
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 128/300 (42%), Gaps = 20/300 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PI+Y P+Y L H F K++ ++ L A+F T P+
Sbjct: 4 PIIYHPDY---IAPLPPGHRFPMSKFEKLYELLLAE--GVAQTAQFHT------PKRPPP 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E + + HT +Y+K+ L P + C VGGT+ +A
Sbjct: 53 ELIELVHTSEYVKAYCEGTLEPKAQRRIGLPWSPELVNRTCVA------VGGTILTAQMA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L +G + N GG HHA + G GFC + D+++ ++L + + +IVDLD HQG+G
Sbjct: 107 LSQGLACNTAGGTHHAFPSYGSGFCIFNDLAIACRVLQKLGLVQNILIVDLDVHQGDGTA 166
Query: 292 KDFMNETRIFIMET-CITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
F + +F C + K+ + L ED YL+ + L L PD
Sbjct: 167 VIFQGDDSVFTFSMHCEVNFPGTKQTSDLDVPLTVGMEDDAYLQTLANYLPDLLSHIQPD 226
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
+++Y+AG D + D LG LA+S GI R+ V P+ + GGY ++
Sbjct: 227 LVLYDAGVDPHIGDRLGKLALSDTGIFLREMQVLSTCVAAGYPVACVIGGGYADDMKSLV 286
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ +AL +G + N GG HHA + G GFC + D+++ ++L + + +IVDL
Sbjct: 98 GTILTAQMALSQGLACNTAGGTHHAFPSYGSGFCIFNDLAIACRVLQKLGLVQNILIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|71907996|ref|YP_285583.1| histone deacetylase superfamily protein [Dechloromonas aromatica
RCB]
gi|71847617|gb|AAZ47113.1| Histone deacetylase superfamily [Dechloromonas aromatica RCB]
Length = 300
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 125/287 (43%), Gaps = 17/287 (5%)
Query: 120 NVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHT 179
+V L H F +K+ + L L +F D + P ++E+L AH
Sbjct: 7 DVFVLPLPAGHRFPMEKYSRLRQAL-------LASGEFSESDFQL-PHAATDEELGRAHD 58
Query: 180 EKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSIN 239
Y++++ ++ +SE A+ + Q R R G T+ A AL S N
Sbjct: 59 LDYIQAI----SIGELSEAAQ-KAIGFPWSQGMVERSRRS-AGATICACRAALAEDVSAN 112
Query: 240 IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETR 299
+ GG HHA G GFC + D ++ + + +IVD D HQGNG +
Sbjct: 113 LAGGTHHAFRDHGEGFCIFNDAAVAARTMQAEGRAKRVLIVDCDVHQGNGTASILRGDDS 172
Query: 300 IFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGT 356
IF KE IEL D YL +E GL + + PD+++Y AG
Sbjct: 173 IFTFSIHGARNFPFDKEQSDLDIELPDGCSDDAYLAHLEEGLGIAFDASRPDLVIYLAGA 232
Query: 357 DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
D +D LG L +S G+ RD LV + + R+P+ + +GGY +Q
Sbjct: 233 DPYHDDRLGRLGLSFAGLAERDRLVLARCKANRIPVAIAMAGGYARQ 279
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
T+ A AL S N+ GG HHA G GFC + D ++ + + +IVD D
Sbjct: 97 TICACRAALAEDVSANLAGGTHHAFRDHGEGFCIFNDAAVAARTMQAEGRAKRVLIVDCD 156
Query: 65 AHQFS---------DYYFPSAHSIKRKRKVEFLKERKALEDEI 98
HQ + D F SI R F KE+ L+ E+
Sbjct: 157 VHQGNGTASILRGDDSIF--TFSIHGARNFPFDKEQSDLDIEL 197
>gi|71733714|ref|YP_276468.1| histone deacetylase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|71554267|gb|AAZ33478.1| histone deacetylase family protein [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 305
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 135/296 (45%), Gaps = 22/296 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y +Y+ F + P D ++ + +YLV++ + ++ P+
Sbjct: 4 PLIYHEDYSPDFPADHRF-PMDK----------FRLLRDYLVDSGLTSDVQLMRPELCPA 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ L +AH Y+ N E + +P + R VGG+L A
Sbjct: 53 DILALAHDPSYISRY---LNGDLSREDQRRLGLP---WSEALARRTVSAVGGSLLTAEQA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L+ G + ++ GG HHA GFC + D++++ + L QS + +I D D HQG+G
Sbjct: 107 LKHGMACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQGDGTA 166
Query: 292 KDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ + +T I + K A + + I L D +YL ++ L L + P
Sbjct: 167 R-ILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDANYLNVVDDLLNYLLPFYKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
D+++Y+AG DV +D LG L ++ QG+ RDE V R +P++ + GGY K
Sbjct: 226 DLVLYDAGVDVHKDDALGYLQLTDQGVANRDEAVLRHCLSRDIPVMGVIGGGYSKD 281
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L AL+ G + ++ GG HHA GFC + D++++ + L QS + +I D
Sbjct: 98 GSLLTAEQALKHGMACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|398964631|ref|ZP_10680408.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM30]
gi|398148017|gb|EJM36705.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM30]
Length = 306
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 140/300 (46%), Gaps = 26/300 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F P D + F L H LV++ +++ P+
Sbjct: 2 PLPLIYHEDYSPEF-------PADHRFPMDKFRLLRDH----LVDSGLTRDADLLRPEIC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVP-NYFVQKCYLRPMRYHVGGTLEA 227
+ L +AH +Y++ + +S E + +P N + + +R VGG++ A
Sbjct: 51 PNDILALAHDRRYIE----RYMSGELSREDQRRLGLPWNEALARRTVRA----VGGSILA 102
Query: 228 GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQG 287
AL G + ++ GG HHA GFC + D++++ L QS ++ +I D D HQG
Sbjct: 103 AEKALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAIISHYLLQSGRVNRVLIFDCDVHQG 162
Query: 288 NGYEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLR 343
+G + +++T I + K A + I L D YL+ ++ L L
Sbjct: 163 DGTAR-ILHDTPEAITVSLHCEKNFPARKAESDWDIPLPNGMGDADYLQVVDDTLNYLLP 221
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ G+ RDE V R +P+V + GGY K
Sbjct: 222 LYQPDLVLYDAGVDVHKDDALGYLQLTDAGVAARDESVMRHCLGRDIPVVGVIGGGYSKD 281
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ A AL G + ++ GG HHA GFC + D++++ L QS ++ +I D
Sbjct: 98 GSILAAEKALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAIISHYLLQSGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|336314525|ref|ZP_08569442.1| deacetylase, histone deacetylase/acetoin utilization protein
[Rheinheimera sp. A13L]
gi|335881065|gb|EGM78947.1| deacetylase, histone deacetylase/acetoin utilization protein
[Rheinheimera sp. A13L]
Length = 319
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 140/302 (46%), Gaps = 25/302 (8%)
Query: 106 VVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIE 165
V T+P ++Y P Y+ + +P ++ ++ L+E + D
Sbjct: 2 VRTKPPGLIYHPIYSQLELPFKHRYPIGK----------YQALYQALLELG-VPVDQFTS 50
Query: 166 PQEVSEEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGT 224
Q + +QL H Y K L + A+ + P + ++ R + VGGT
Sbjct: 51 SQIATTDQLGSVHDPFYTKQLISGQLDAKAMRRI----GFP--WSEQLVTRSLT-SVGGT 103
Query: 225 LEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDA 284
++ LAL++G ++++ GG+HHA +G GFC + D+++ + ++ + +I D D
Sbjct: 104 VQTVQLALQQGLALHLSGGYHHAFVGEGSGFCLFNDLAVAARYAL-TQGVDKVLIFDCDV 162
Query: 285 HQGNGYEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLER 340
HQG+G F +E I E ++ K+ + L D YL ++ LE
Sbjct: 163 HQGDGTAAIFSDEPAIITASLHGEKNFPAR-KQQSSWDLGLPTACTDGEYLAAVKQSLEY 221
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
LR PD+++++AG D+ D LGLL IS G+ RD V + +R +P+ + GGY
Sbjct: 222 LLRIHQPDLVIFDAGIDIHQQDDLGLLHISTAGVAERDWYVLNECHKREIPVAAVIGGGY 281
Query: 401 LK 402
+
Sbjct: 282 QR 283
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++ LAL++G ++++ GG+HHA +G GFC + D+++ + ++ + +I D
Sbjct: 102 GTVQTVQLALQQGLALHLSGGYHHAFVGEGSGFCLFNDLAVAARYAL-TQGVDKVLIFDC 160
Query: 64 DAHQ 67
D HQ
Sbjct: 161 DVHQ 164
>gi|428774306|ref|YP_007166094.1| histone deacetylase [Cyanobacterium stanieri PCC 7202]
gi|428688585|gb|AFZ48445.1| Histone deacetylase [Cyanobacterium stanieri PCC 7202]
Length = 303
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 131/305 (42%), Gaps = 30/305 (9%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNII-EPQEVS 170
P+VY +Y L + H F K+K ++ L K IT + +P S
Sbjct: 4 PVVYHADY---VTPLPQEHRFPMPKFKLLYELLLK---------DGITSPTLTHQPLIAS 51
Query: 171 EEQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVP---NYFVQKCYLRPMRYHVGGTLE 226
E L + H Y++ S + A+ + +P + C V GT+
Sbjct: 52 AEILQLVHHPHYVEQYCNGSLDTKALRRI----GLPWSEGLVKRTCTA------VAGTIL 101
Query: 227 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 286
LAL+ G N GG HHA G GFC + D+++ K L + + + +IVDLD HQ
Sbjct: 102 TAQLALKYGLCCNTAGGTHHAFPEYGSGFCIFNDLAIASKYLLEHQLVEKILIVDLDVHQ 161
Query: 287 GNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
G+G F +E R+F + K+ I L +D YL+ + + L L+
Sbjct: 162 GDGTAYTFAHEPRVFTFSMHCEANFPYRKQTSDLDIPLPIGLDDDGYLQILASHLPHLLQ 221
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PDI++Y+ G D D LG L ++ GI RR+ V + P+ + GGY K
Sbjct: 222 EVRPDIVLYDGGVDTHRGDRLGKLCLTETGIYRREMQVLSTCLAQGYPVACVIGGGYSKD 281
Query: 404 TARII 408
++
Sbjct: 282 IHELV 286
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL+ G N GG HHA G GFC + D+++ K L + + + +IVDL
Sbjct: 98 GTILTAQLALKYGLCCNTAGGTHHAFPEYGSGFCIFNDLAIASKYLLEHQLVEKILIVDL 157
Query: 64 DAHQFSDYYFPSAH 77
D HQ + AH
Sbjct: 158 DVHQGDGTAYTFAH 171
>gi|254413119|ref|ZP_05026891.1| Histone deacetylase family, putative [Coleofasciculus
chthonoplastes PCC 7420]
gi|196180283|gb|EDX75275.1| Histone deacetylase family, putative [Coleofasciculus
chthonoplastes PCC 7420]
Length = 304
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 126/293 (43%), Gaps = 22/293 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY P+Y L H F K+ + L + +T + I P
Sbjct: 4 PIVYHPDY---VTPLPPGHRFPMSKFGKLCELL--------LADTIVTSEQIHTPNPPPR 52
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
E + + HT Y+++ + + A + L P + C VGGT+ L
Sbjct: 53 EWIQLIHTPDYIQAYCNGTLDPKAQRRIG-LPWSPGLVTRTCTA------VGGTILTAQL 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G + N GG HHA + G GFC + D+++ ++L + +I+DLD HQG+G
Sbjct: 106 ALTHGIACNTAGGTHHAFPSYGSGFCIFNDLAIATRVLQTMGLVQKILILDLDVHQGDGT 165
Query: 291 EKDFMNETRIFI--METCITSKA-KEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
F N+ +F M + A K+ I L +D YL+ + L L P
Sbjct: 166 AFIFQNDPTVFTFSMHCQVNFPATKQKSDLDIPLPVGMDDDAYLQTLAHHLPDILSEVQP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
D+++Y+AG D D G LA++ GI RR+ V P+ + GGY
Sbjct: 226 DLVLYDAGVDTHACDRFGKLALTDTGIYRREMQVLSTCIAAGYPVASVIGGGY 278
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G + N GG HHA + G GFC + D+++ ++L + +I+DL
Sbjct: 98 GTILTAQLALTHGIACNTAGGTHHAFPSYGSGFCIFNDLAIATRVLQTMGLVQKILILDL 157
Query: 64 DAHQFSDYYF-----PSAHSIKRKRKVEFLKERKALEDEI 98
D HQ F P+ + +V F ++ + +I
Sbjct: 158 DVHQGDGTAFIFQNDPTVFTFSMHCQVNFPATKQKSDLDI 197
>gi|398938902|ref|ZP_10668169.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM41(2012)]
gi|398164896|gb|EJM53021.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM41(2012)]
Length = 306
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 137/299 (45%), Gaps = 24/299 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F P D + F L H LV++ +++ P
Sbjct: 2 PLPLIYHEDYSPEF-------PADHRFPMDKFRLLRDH----LVDSGLTRDADLLRPDLC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAG 228
E L +AH Y++ + +S E + +P + + R +R VGG+L A
Sbjct: 51 PPEILALAHDPAYIER----YMGGELSREDQRRLGLP--WSEALARRTVRA-VGGSLLAA 103
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
AL G + ++ GG HHA GFC + D++++ L +S ++ +I D D HQG+
Sbjct: 104 EQALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISHFLLESGRVNRVLIFDCDVHQGD 163
Query: 289 GYEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRS 344
G + N + E ++ E+ I L D YL+ ++ L L
Sbjct: 164 GTARILHNTPEAVTVSLHCEKNFPARKAES-DWDIPLPMGMGDADYLKVVDDALNYLLPL 222
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P+V + GGY K
Sbjct: 223 YQPDLVLYDAGVDVHKDDALGYLKLTDEGVAARDESVMRHCLGRDIPVVGVIGGGYSKD 281
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ L +S ++ +I D
Sbjct: 98 GSLLAAEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISHFLLESGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|440712560|ref|ZP_20893176.1| histone deacetylase/AcuC/AphA family protein [Rhodopirellula
baltica SWK14]
gi|436442715|gb|ELP35826.1| histone deacetylase/AcuC/AphA family protein [Rhodopirellula
baltica SWK14]
Length = 285
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 124/267 (46%), Gaps = 19/267 (7%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQK 211
+VE++ D +I PQ ++EQLL HT Y++ ++ + + + P + K
Sbjct: 11 VVESEHHRDDTLIVPQAATDEQLLHCHTPDYVRRVQ---SGTLTKQEIRRIGFP--WSAK 65
Query: 212 CYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS 271
R R G T+ A AL G S N+ GG HHA +G G+C + D ++ ++ L
Sbjct: 66 MVERSRRS-TGATISAARAALDEGISANLAGGTHHAFAGEGEGYCVFNDAAVAIRTLQSE 124
Query: 272 KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSKAKE-AIR-----CRIELAPYT 325
I A I+DLD HQGNG + +F TC K +R + L T
Sbjct: 125 GLIQRAAIIDLDVHQGNGTASILKDVPSVF---TCSVHGVKNFPLRKMPSDLDVSLPDGT 181
Query: 326 EDQHYLEKIEAGLER----SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV 381
D Y + + + L + S D+++Y AG D ND LG L+++ G+ RRDELV
Sbjct: 182 GDDDYCDALRSVLAKLKKHQSESGQFDLVIYLAGADPYKNDRLGRLSLTMDGLRRRDELV 241
Query: 382 FMKARERRVPIVMLTSGGYLKQTARII 408
+P+ + +GGY + I+
Sbjct: 242 LQWCHHNDLPVAIAMAGGYSVEVKEIV 268
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
T+ A AL G S N+ GG HHA +G G+C + D ++ ++ L I A I+DL
Sbjct: 76 ATISAARAALDEGISANLAGGTHHAFAGEGEGYCVFNDAAVAIRTLQSEGLIQRAAIIDL 135
Query: 64 DAHQ 67
D HQ
Sbjct: 136 DVHQ 139
>gi|398858263|ref|ZP_10613955.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM79]
gi|398239575|gb|EJN25282.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM79]
Length = 306
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 137/299 (45%), Gaps = 24/299 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F P D + F L H LV++ +++ P
Sbjct: 2 PLPLIYHEDYSPEF-------PADHRFPMDKFRLLRDH----LVDSGLTRDTDLLRPDLC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAG 228
E L +AH Y++ + +S E + +P + + R +R VGG+L A
Sbjct: 51 PPEILALAHDPAYIER----YMGGELSREDQRRLGLP--WSEALARRTVRA-VGGSLLAA 103
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
AL G + ++ GG HHA GFC + D++++ L +S ++ +I D D HQG+
Sbjct: 104 EQALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISHYLLESGRVNRVLIFDCDVHQGD 163
Query: 289 GYEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRS 344
G + N + E ++ E+ I L D YL+ ++ L L
Sbjct: 164 GTARILHNTPEAITVSLHCEKNFPARKAES-DWDIPLPMGMGDADYLKVVDDALNYLLPL 222
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P+V + GGY K
Sbjct: 223 YQPDLVLYDAGVDVHKDDALGYLKLTDEGVAARDESVMRHCLGRDIPVVGVIGGGYSKD 281
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ L +S ++ +I D
Sbjct: 98 GSLLAAEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISHYLLESGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|304320465|ref|YP_003854108.1| histone deacetylase/AcuC/AphA family protein [Parvularcula
bermudensis HTCC2503]
gi|303299367|gb|ADM08966.1| putative histone deacetylase/AcuC/AphA family protein [Parvularcula
bermudensis HTCC2503]
Length = 299
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 131/270 (48%), Gaps = 16/270 (5%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLK-WSFNVAAISEVCPLVAVPNYFVQ 210
L+E + + + + E ++ +AHTE Y+ SL+ + + A+ + P +
Sbjct: 31 LIEERLLPAERLAPSPAAREGEIKVAHTESYIASLREGTIDPRAMRRI----GFP--WSP 84
Query: 211 KCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQ 270
+ R R VGG L A AL+ G S + GG HHA G G+C Y D +++ + L
Sbjct: 85 HIHRRGQRT-VGGALAAARRALKEGLSGQLAGGTHHAHAEAGSGYCIYNDFAVVARTLLN 143
Query: 271 SKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTED 327
+ IVDLD HQG+G + ++I++ K + L TED
Sbjct: 144 EGVVDRIAIVDLDVHQGDGNAAMLTDHPGVYILDVFGEKNFPFRKVPATLDVPLPDRTED 203
Query: 328 QHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE 387
+L IEA L + + +F PD+++Y AG D L +D LG L IS G++ RD +V A +
Sbjct: 204 GAFLAAIEAHLPQ-VWAFEPDLLLYQAGVDPLASDKLGRLDISFAGLMDRDRMVLGGAWQ 262
Query: 388 RRVPIVMLTSGGYLKQTARIIADSILNLAD 417
R +P+ M GGY A I DS+ A+
Sbjct: 263 RGIPVSMAIGGGY----ADPIGDSVRAYAN 288
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 14 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+ G S + GG HHA G G+C Y D +++ + L + IVDLD HQ
Sbjct: 106 KEGLSGQLAGGTHHAHAEAGSGYCIYNDFAVVARTLLNEGVVDRIAIVDLDVHQ 159
>gi|372222676|ref|ZP_09501097.1| histone deacetylase [Mesoflavibacter zeaxanthinifaciens S86]
Length = 300
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 112/253 (44%), Gaps = 15/253 (5%)
Query: 162 NIIEPQEVSEEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH 220
N EP + +L HT Y L K + + I ++ + + K +
Sbjct: 42 NFFEPIYAEIQPILAVHTTDYYSRLTKLNLDKKEIRKI-------GFPLSKQLVDREHII 94
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
GTL+A AL+ G ++NI GG HHA +G FC D ++ + L S +IV
Sbjct: 95 TDGTLKAIQFALKYGIAMNIAGGTHHAYSNRGEAFCLLNDQAIGAQYLLDQNLASKILIV 154
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSKA-----KEAIRCRIELAPYTEDQHYLEKIE 335
DLD HQGNG + F + +F I KA KE I L T D YL+ +
Sbjct: 155 DLDVHQGNGTAEIFEHNPHVFTFS--IHGKANYPFKKEISDLDIALEKGTTDDVYLKILN 212
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
L L PD + Y AG DVL D LG L ++ +G +RD +V + +P++
Sbjct: 213 ETLSNLLEQTQPDFVFYLAGVDVLATDKLGTLGLTKEGCKKRDAMVLQACKNNGLPVMCS 272
Query: 396 TSGGYLKQTARII 408
GGY + I+
Sbjct: 273 MGGGYSPEIKHIV 285
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL+A AL+ G ++NI GG HHA +G FC D ++ + L S +IVDL
Sbjct: 97 GTLKAIQFALKYGIAMNIAGGTHHAYSNRGEAFCLLNDQAIGAQYLLDQNLASKILIVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|409422584|ref|ZP_11259675.1| histone deacetylase superfamily protein [Pseudomonas sp. HYS]
Length = 304
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 138/298 (46%), Gaps = 22/298 (7%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F E P D ++ + ++LV + T ++ P+
Sbjct: 2 PLPLIYHDDYSP-AFPAEHRFPMDK----------FRLLRDHLVASGLTTDAALLRPEIC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
++ L +AH Y++ + E + +P + + R +R VGG+L A
Sbjct: 51 PDDILALAHDRAYIERY---MHGELSREDQRRLGLP--WSEALARRTVRA-VGGSLLAAE 104
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
AL G + ++ GG HHA GFC + D++++ L ++ + +I D D HQG+G
Sbjct: 105 QALEHGIACHLAGGTHHAHYDHPAGFCIFNDLAVISHYLLEAGRVHKVLIFDCDVHQGDG 164
Query: 290 YEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
+ N + E ++ E+ I L DQ YL+ ++ L L +
Sbjct: 165 TARILHNTPDAITVSLHCEQNFPARKAES-DWDIPLPRGMGDQAYLKVVDDALNYLLPLY 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P+V + GGY K
Sbjct: 224 RPDLVLYDAGVDVHKDDALGYLQLTDEGVAARDESVLRHCLGRDIPVVGVIGGGYSKD 281
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ L ++ + +I D
Sbjct: 98 GSLLAAEQALEHGIACHLAGGTHHAHYDHPAGFCIFNDLAVISHYLLEAGRVHKVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|398905223|ref|ZP_10652679.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM50]
gi|398174733|gb|EJM62519.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM50]
Length = 329
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 137/299 (45%), Gaps = 24/299 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F P D + F L H LV++ +++ P
Sbjct: 25 PLPLIYHEDYSPEF-------PADHRFPMDKFRLLRDH----LVDSGLARDTDLLRPDLC 73
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAG 228
E L +AH Y++ + +S E + +P + + R +R VGG+L A
Sbjct: 74 PPEILALAHDPAYIER----YMGGELSREDQRRLGLP--WSEALARRTVRA-VGGSLLAA 126
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
AL G + ++ GG HHA GFC + D++++ L +S ++ +I D D HQG+
Sbjct: 127 EQALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISHYLLESGRVNRVLIFDCDVHQGD 186
Query: 289 GYEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRS 344
G + N + E ++ E+ I L D YL+ ++ L L
Sbjct: 187 GTARILHNTPEAITVSLHCEKNFPARKAES-DWDIPLPMGMGDADYLKVVDDALNYLLPL 245
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P+V + GGY K
Sbjct: 246 YQPDLVLYDAGVDVHKDDALGYLKLTDEGVAARDESVMRHCLGRDIPVVGVIGGGYSKD 304
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ L +S ++ +I D
Sbjct: 121 GSLLAAEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISHYLLESGRVNRVLIFDC 180
Query: 64 DAHQ 67
D HQ
Sbjct: 181 DVHQ 184
>gi|423197320|ref|ZP_17183903.1| hypothetical protein HMPREF1171_01935 [Aeromonas hydrophila SSU]
gi|404631008|gb|EKB27644.1| hypothetical protein HMPREF1171_01935 [Aeromonas hydrophila SSU]
Length = 298
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 96/193 (49%), Gaps = 7/193 (3%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
VG TL A AL +G + I GG+HHA G GFC + D+ + + +IV
Sbjct: 93 VGATLAASRHALVQGCGLQISGGYHHAHRDFGSGFCLFNDLVIAAQTCLDEGRCEQVLIV 152
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITS-----KAKEAIRCRIELAPYTEDQHYLEKIE 335
DLD HQG+G + + R I+ + + K A L ED YL +
Sbjct: 153 DLDVHQGDGSAA--LCQGRRDIITLSLHGEHNFPRHKPASHMDFPLPSGMEDDAYLTTLA 210
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
L +LR + PD+I+Y AG DV D LG L++S +G+ +RD +VF A+ +PI +
Sbjct: 211 EALNLALRLYTPDLILYQAGVDVHHADELGYLSLSNEGVRQRDAMVFDCAQRHGLPIAAV 270
Query: 396 TSGGYLKQTARII 408
GGY + ++I
Sbjct: 271 PGGGYRRDWQQLI 283
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
TL A AL +G + I GG+HHA G GFC + D+ + + +IVDLD
Sbjct: 96 TLAASRHALVQGCGLQISGGYHHAHRDFGSGFCLFNDLVIAAQTCLDEGRCEQVLIVDLD 155
Query: 65 AHQ 67
HQ
Sbjct: 156 VHQ 158
>gi|343509659|ref|ZP_08746924.1| histone deacetylase/AcuC/AphA family protein [Vibrio scophthalmi
LMG 19158]
gi|342804010|gb|EGU39349.1| histone deacetylase/AcuC/AphA family protein [Vibrio scophthalmi
LMG 19158]
Length = 260
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 95/182 (52%), Gaps = 3/182 (1%)
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 281
GGT LA+ +G +I++ GG+HHA G GFC D+ L K + I +IVD
Sbjct: 55 GGTWLTTQLAIEQGIAIHLSGGYHHAHYDFGSGFCLINDLVLSAKQALTLEKIDRVLIVD 114
Query: 282 LDAHQGNGYEKDFMNETRIFIME-TCITSKAKEAIRCRIEL--APYTEDQHYLEKIEAGL 338
D H G+G ++ RI + C + I++ A T+D +LE + +
Sbjct: 115 SDVHHGDGTATMCSDDERIITLSFHCDKNFPARKPNSDIDIGFARETQDNEFLEHFYSVV 174
Query: 339 ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSG 398
E ++ + PD+I+Y+AG D+ +D LG IS QG+ +RD + A++R +PI + G
Sbjct: 175 ETAINLYQPDVIIYDAGVDIHQDDELGYFNISTQGLYQRDRFILALAQQRNIPIACVVGG 234
Query: 399 GY 400
GY
Sbjct: 235 GY 236
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LA+ +G +I++ GG+HHA G GFC D+ L K + I +IVD
Sbjct: 56 GTWLTTQLAIEQGIAIHLSGGYHHAHYDFGSGFCLINDLVLSAKQALTLEKIDRVLIVDS 115
Query: 64 DAHQ 67
D H
Sbjct: 116 DVHH 119
>gi|404401075|ref|ZP_10992659.1| histone deacetylase [Pseudomonas fuscovaginae UPB0736]
Length = 306
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 139/299 (46%), Gaps = 24/299 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F E P D ++ + ++LV++ ++ P
Sbjct: 2 PLPLIYHDDYSPEF-PPEHRFPMDK----------FRLLRDHLVDSGLTRDQELLRPDLC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAG 228
+ L +AH Y++ + +S E + +P + + R +R VGG+L A
Sbjct: 51 PVDILTLAHDRDYIER----YRAGELSREDQRRLGLP--WSEALARRTIRA-VGGSLLAA 103
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
AL G + ++ GG HHA GFC + D++++ + +S +S +I D D HQG+
Sbjct: 104 EQALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISRYFLESGRVSRVLIFDCDVHQGD 163
Query: 289 GYEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRS 344
G + + +T I + K A + + I L D YL ++ L L
Sbjct: 164 GTAR-ILEDTPEAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLRVVDDALNYLLPL 222
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P+V + GGY K
Sbjct: 223 YQPDLVLYDAGVDVHKDDALGYLKLTDEGVAARDEKVLRHCLGRDIPVVGVIGGGYSKD 281
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ + +S +S +I D
Sbjct: 98 GSLLAAEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISRYFLESGRVSRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|398885389|ref|ZP_10640302.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM60]
gi|398192581|gb|EJM79728.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM60]
Length = 306
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 138/300 (46%), Gaps = 26/300 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F P D + F L H LV++ +++ P+
Sbjct: 2 PLPLIYHEDYSPEF-------PADHRFPMDKFRLLRDH----LVDSGLTRDADLLRPELC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVP-NYFVQKCYLRPMRYHVGGTLEA 227
E L +AH Y++ + +S E + +P N + + +R VGG+L A
Sbjct: 51 PPEILALAHDAAYIER----YMSGELSREDQRRLGLPWNEALARRTVRA----VGGSLLA 102
Query: 228 GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQG 287
AL G + ++ GG HHA GFC + D++++ L +S ++ +I D D HQG
Sbjct: 103 AEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDCDVHQG 162
Query: 288 NGYEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+G + N + E ++ E+ I L D YL+ ++ L L
Sbjct: 163 DGTARILHNTPDAVTVSLHCEKNFPARKAES-DWDIPLPKGMGDADYLKVVDDALNYLLP 221
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P+V + GGY K
Sbjct: 222 LYQPDLVLYDAGVDVHKDDALGYLKLTDEGVAARDESVMRHCLGRDIPVVGVIGGGYSKD 281
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ L +S ++ +I D
Sbjct: 98 GSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|398837941|ref|ZP_10595225.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM102]
gi|398117499|gb|EJM07250.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM102]
Length = 306
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 137/299 (45%), Gaps = 24/299 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F P D + F L H LV++ +++ P
Sbjct: 2 PLPLIYHEDYSPEF-------PADHRFPMDKFRLLRDH----LVDSGLARDTDLLRPDLC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAG 228
E L +AH Y++ + +S E + +P + + R +R VGG+L A
Sbjct: 51 PPEILALAHDPAYIER----YMGGELSREDQRRLGLP--WSEALARRTVRA-VGGSLLAA 103
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
AL G + ++ GG HHA GFC + D++++ L +S ++ +I D D HQG+
Sbjct: 104 EQALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISHYLLESGRVNRVLIFDCDVHQGD 163
Query: 289 GYEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRS 344
G + N + E ++ E+ I L D YL+ ++ L L
Sbjct: 164 GTARILHNTPEAITVSLHCEKNFPARKAES-DWDIPLPMGMGDADYLKVVDDALNYLLPL 222
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P+V + GGY K
Sbjct: 223 YQPDLVLYDAGVDVHKDDALGYLKLTDEGVAARDESVMRHCLGRDIPVVGVIGGGYSKD 281
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ L +S ++ +I D
Sbjct: 98 GSLLAAEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISHYLLESGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|163802804|ref|ZP_02196693.1| histone deacetylase/AcuC/AphA family protein [Vibrio sp. AND4]
gi|159173344|gb|EDP58167.1| histone deacetylase/AcuC/AphA family protein [Vibrio sp. AND4]
Length = 307
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 139/300 (46%), Gaps = 15/300 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y+ L K H + K+ H L++ + + Q +P +S
Sbjct: 3 PLIYHPIYSQ--LDLPKGHRYPIMKYHH----LYQAVEQKRALGCWGRQVEFFQPTSLSV 56
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+++ H+E+Y+ L V+ + + + + R + G L A A
Sbjct: 57 DEVKRVHSEEYVDLL-----VSGAIPAAKMRRIGFPWSEALITRTLTSTAGTVLTAE-KA 110
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G ++++ GG+HHA + G GFC + D+++ K + + I MI+D D H G+G
Sbjct: 111 LEHGIAVHLSGGYHHAHKDFGSGFCLFNDLAIAAKRMLGHELIDKVMIIDSDVHHGDGTA 170
Query: 292 KDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
+E+ I + C + K + L T D+ +LE + +E ++ PD
Sbjct: 171 TLCQDESDIITLSFHCDKNFPARKPDSDLDVPLGRGTNDETFLEAFKEVVEMAVNIHRPD 230
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
+++Y+AG D+ +D LG +S +GI RD + +++ +P+ + GGY + A ++
Sbjct: 231 MVIYDAGVDIHTDDELGYFKVSTEGIFERDRFLMQLMKDKDIPVAAVVGGGYRSEHADLV 290
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ AL G ++++ GG+HHA + G GFC + D+++ K + + I MI+D
Sbjct: 102 GTVLTAEKALEHGIAVHLSGGYHHAHKDFGSGFCLFNDLAIAAKRMLGHELIDKVMIIDS 161
Query: 64 DAHQ 67
D H
Sbjct: 162 DVHH 165
>gi|441502098|ref|ZP_20984109.1| Histone deacetylase/AcuC/AphA family protein [Photobacterium sp.
AK15]
gi|441429845|gb|ELR67296.1| Histone deacetylase/AcuC/AphA family protein [Photobacterium sp.
AK15]
Length = 311
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 130/303 (42%), Gaps = 22/303 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYL--WKHIFNYLVEAKFITQDNIIEPQEV 169
P+VY P Y+ L + H + K++ +++YL +I N + A +P +
Sbjct: 3 PLVYHPIYSQ--LDLPEGHRYPITKYRLLYDYLNCELNITNRAITA-------FHQPIPI 53
Query: 170 SEEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAG 228
+L H Y+++L S A + + P + Q+ R + G L
Sbjct: 54 EAHELKSLHCPDYIEALVNNSLPAAKMRRI----GFP--WSQQLIDRTLMSAAGTRLTVD 107
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
LA G I++ GG+HHA G GFC D++ + I MI+D D HQG+
Sbjct: 108 -LAFEHGIGIHLSGGYHHAHHDFGSGFCLINDLAFAARHALTLDGIEKVMIIDCDVHQGD 166
Query: 289 GYEKDFMNETRIFIMET-CITSKAKEAIRCRIELA--PYTEDQHYLEKIEAGLERSLRSF 345
G +E I C + I+LA T Y+E E+ L +L
Sbjct: 167 GTATLLADEPNIITFSVHCDKNFPARKPDSDIDLALPKSTTTNEYIETFESILNLALAQH 226
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PD I+Y+AG D+ +D LG IS GI RD LV R+PI + GGY K
Sbjct: 227 QPDFILYDAGVDIHKDDELGYFDISLNGIFERDRLVLNHCHSDRIPIAAVVGGGYRKDHQ 286
Query: 406 RII 408
++I
Sbjct: 287 QLI 289
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 11 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
LA G I++ GG+HHA G GFC D++ + I MI+D D HQ
Sbjct: 108 LAFEHGIGIHLSGGYHHAHHDFGSGFCLINDLAFAARHALTLDGIEKVMIIDCDVHQ 164
>gi|149917141|ref|ZP_01905641.1| Histone deacetylase superfamily protein [Plesiocystis pacifica
SIR-1]
gi|149822057|gb|EDM81450.1| Histone deacetylase superfamily protein [Plesiocystis pacifica
SIR-1]
Length = 623
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 131/283 (46%), Gaps = 11/283 (3%)
Query: 146 KHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP 205
+ I + LV + + ++ P + +L H + YL+ L+ + A + + V P
Sbjct: 53 ERILSALVREGLVGPECVVRPTPAAFVKLARVHDQAYLERLE---SAAVMEQAFGEVVPP 109
Query: 206 NYFVQKCYLRPMRYHVGGTLEAGFLALRR-GWSINIGGGFHHASETKGGGFCAYADISLL 264
L+ R VGGT+ A A RR ++N+GGGFHHA + GGFC D+++
Sbjct: 110 GPATAIVELQ--RAMVGGTMLAARAAWRRHKLAVNLGGGFHHARRDRAGGFCLLNDVAVA 167
Query: 265 VKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRI--FIMETCITSKAKEAIRCRIELA 322
+ L S +VDLD H G+G F ++ + F + + + I L
Sbjct: 168 IAELRASGFTGPISVVDLDLHDGDGTRLMFADDPSVWTFSIHNRHWAPTQAVSSTAIALG 227
Query: 323 PYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVF 382
D+ YL + + L R+L + P ++ Y AG D +DPLG IS + ++ RD V
Sbjct: 228 DDVGDRDYLGALRSHLPRALDAHRPSLVFYLAGCDPADDDPLGNWHISAEAMLARDRFVL 287
Query: 383 MKARERRV-PIVMLTSGGYLKQTARIIADSILNLADLGLISRP 424
R R V +V L +GGY R A + +A LG ++P
Sbjct: 288 DALRARGVESVVWLLAGGYGSGAWRHSARGL--IAGLGGPAKP 328
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 1 MEYGTLEAGFLALRR-GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 59
M GT+ A A RR ++N+GGGFHHA + GGFC D+++ + L S
Sbjct: 122 MVGGTMLAARAAWRRHKLAVNLGGGFHHARRDRAGGFCLLNDVAVAIAELRASGFTGPIS 181
Query: 60 IVDLDAHQ 67
+VDLD H
Sbjct: 182 VVDLDLHD 189
>gi|146281268|ref|YP_001171421.1| histone deacetylase family protein [Pseudomonas stutzeri A1501]
gi|145569473|gb|ABP78579.1| histone deacetylase family protein [Pseudomonas stutzeri A1501]
Length = 306
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 137/304 (45%), Gaps = 34/304 (11%)
Query: 112 PIVYRPEYNV-----HFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEP 166
P+VY +Y+ H F +EK ++ + ++LV T ++ P
Sbjct: 4 PLVYHDDYSPPLPPGHRFPMEK----------------FRLLRDHLVTLGMTTDAALLRP 47
Query: 167 QEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLE 226
+ L +AH Y+ ++ E+ L +P + + R +R VGG+L
Sbjct: 48 SLCRRDILTLAHDADYVA--RYCSGEMGRDELRRL-GLP--WSPELAQRTVRA-VGGSLL 101
Query: 227 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 286
A AL+ G + ++ GG HHA GFC + D++++ L +S + +I D D HQ
Sbjct: 102 AAEQALQHGLACHLAGGTHHAHRDHASGFCIFNDLAVIALYLLESGLVGRVLIFDCDVHQ 161
Query: 287 GNGYEKDFMN-----ETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERS 341
G+G + N + + T KA I L P D+ YL+ + L
Sbjct: 162 GDGTARILENVPDAVTVSLHCEKNFPTRKAHS--DWDIPLPPGMGDEAYLQVVHDTLNYL 219
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYL 401
L + PD+++Y+AG DV +D LGLL+++ G+ RD V R +P+V L GGY
Sbjct: 220 LPIYQPDLVLYDAGVDVHRDDALGLLSLTDAGLAARDSAVLDHCLGRDIPVVGLIGGGYD 279
Query: 402 KQTA 405
K A
Sbjct: 280 KDRA 283
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL+ G + ++ GG HHA GFC + D++++ L +S + +I D
Sbjct: 98 GSLLAAEQALQHGLACHLAGGTHHAHRDHASGFCIFNDLAVIALYLLESGLVGRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|170728227|ref|YP_001762253.1| histone deacetylase superfamily protein [Shewanella woodyi ATCC
51908]
gi|169813574|gb|ACA88158.1| histone deacetylase superfamily [Shewanella woodyi ATCC 51908]
Length = 305
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 151/302 (50%), Gaps = 18/302 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y+ L + H + K++++++++ K ++ + + P+ ++
Sbjct: 3 PLIYHPMYS--HLSLPEGHRYPIMKYQYLYDFIIK---KSETDSNWQQRLAFFSPKALTA 57
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+++ H ++Y++ L + +AA + P + ++ R + GT+ A A
Sbjct: 58 DEVKQVHGDEYVEQL-MTGTLAA--NKMRRIGFP--WSEELMQRTLT-SAAGTVLAAIKA 111
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG-- 289
+ G +I++ GG+HHA + G GFC D+ L Q ++I +I+D D HQG+G
Sbjct: 112 IEHGVAIHLSGGYHHAHKDFGSGFCLLNDLVLAAHFGLQRENIDKVLIIDSDVHQGDGTA 171
Query: 290 ---YEKDFMNETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
E+D + T F + ++ ++ + L T+D +L + +E ++
Sbjct: 172 TLCQERDDII-TLSFHCDKNFPARKPDS-DLDLPLTRGTDDDSFLATFKQVVEMAVNLHQ 229
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
PD+I+Y+AG D+ +D LG L IS Q I +RD +F ++R +P+ + GGY + +
Sbjct: 230 PDLIIYDAGVDIHQDDELGYLNISTQAIYQRDHFLFDTMKQRGIPVAAVVGGGYRTEQSA 289
Query: 407 II 408
++
Sbjct: 290 LV 291
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A A+ G +I++ GG+HHA + G GFC D+ L Q ++I +I+D
Sbjct: 103 GTVLAAIKAIEHGVAIHLSGGYHHAHKDFGSGFCLLNDLVLAAHFGLQRENIDKVLIIDS 162
Query: 64 DAHQ 67
D HQ
Sbjct: 163 DVHQ 166
>gi|434405446|ref|YP_007148331.1| deacetylase, histone deacetylase/acetoin utilization protein
[Cylindrospermum stagnale PCC 7417]
gi|428259701|gb|AFZ25651.1| deacetylase, histone deacetylase/acetoin utilization protein
[Cylindrospermum stagnale PCC 7417]
Length = 305
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 128/300 (42%), Gaps = 20/300 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PI+Y +Y L H F K++ ++ L + Q+ P+ ++
Sbjct: 4 PIIYHSDY---IAPLPPGHRFPMSKFRQLYELLLADGVAH--------QEQFYAPERPTQ 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ + + HT Y+++ L P + C VGGT+ LA
Sbjct: 53 DLIELVHTPNYVQAYCEGTLEPKAQRRIGLPWSPALVNRTCVA------VGGTILTAKLA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G + N GG HHA G GFC + D+++ ++L Q + ++VDLD HQG+G
Sbjct: 107 LSHGLACNTAGGTHHAFPGYGSGFCIFNDLAIASRVLQQLGIVQKILVVDLDVHQGDGTA 166
Query: 292 KDFMNETRIFIMET-CITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
F ++ +F C + K+ + L ED YL+ + L L PD
Sbjct: 167 FIFQDDKSVFTFSMHCEVNFPGTKQNSDLDVPLTEGMEDDVYLQTLAQYLPDLLSDVKPD 226
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
+++Y+AG D + D LG LA++ GI RR+ V P+ + GGY + ++
Sbjct: 227 LVLYDAGVDPHIGDRLGKLALTDTGIFRREMQVLSTCVSAGYPVACVIGGGYAEDMKSLV 286
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G + N GG HHA G GFC + D+++ ++L Q + ++VDL
Sbjct: 98 GTILTAKLALSHGLACNTAGGTHHAFPGYGSGFCIFNDLAIASRVLQQLGIVQKILVVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|162457481|ref|YP_001619848.1| histone deacetylase [Sorangium cellulosum So ce56]
gi|161168063|emb|CAN99368.1| histone deacetylase family protein [Sorangium cellulosum So ce56]
Length = 327
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 119/260 (45%), Gaps = 21/260 (8%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
I EP VS+E LL HT Y++++ + A++E L P +R+ G
Sbjct: 49 IEEPGPVSDEDLLRVHTPGYVQAIA-TGEPRALAESQKLPWSP------ALAGAVRFTNG 101
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
G + A AL G + N+ GFHHA G GFC + + + ++ I A++VD+
Sbjct: 102 GCIAAVSAALEEGIAGNLASGFHHAHADHGEGFCTFNGLVVAMERARVEGRIRRALVVDM 161
Query: 283 DAHQGNGYEKDFMNETRIFIMETCIT-SKAKEAIR-CRIELAPYTEDQ------------ 328
D H GNG + F + K A R E AP TE+
Sbjct: 162 DLHYGNGTASLLASRPWAFALSIYGNWYKQNRAYRDVEGERAPDTENSWSVPVPGGSGGA 221
Query: 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER 388
YLE +E L ++ PD+I+Y AG D DP L ++ + RDE+VF A ER
Sbjct: 222 AYLEILERHLGPAIDRAAPDLILYQAGADPFREDPYSPLDLTHDDLRARDEIVFRTALER 281
Query: 389 RVPIVMLTSGGYLKQTARII 408
R+PI + +GGY +R++
Sbjct: 282 RIPIAWVLAGGYTPDVSRVV 301
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G + A AL G + N+ GFHHA G GFC + + + ++ I A++VD+
Sbjct: 102 GCIAAVSAALEEGIAGNLASGFHHAHADHGEGFCTFNGLVVAMERARVEGRIRRALVVDM 161
Query: 64 DAH 66
D H
Sbjct: 162 DLH 164
>gi|398873689|ref|ZP_10628942.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM74]
gi|398198844|gb|EJM85796.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM74]
Length = 325
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 138/303 (45%), Gaps = 26/303 (8%)
Query: 107 VTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEP 166
+ P P++Y +Y+ F P D + F L H LV++ +++ P
Sbjct: 18 IIMPLPLIYHEDYSPEF-------PADHRFPMDKFRLLRDH----LVDSGLTRDTDLLRP 66
Query: 167 QEVSEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVP-NYFVQKCYLRPMRYHVGGT 224
E L +AH Y++ + +S E + +P N + + +R VGG+
Sbjct: 67 DLCPAEILALAHDPSYIER----YMSGELSREDQRRLGLPWNEALARRTVRA----VGGS 118
Query: 225 LEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDA 284
L A AL G + ++ GG HHA GFC + D++++ L +S ++ +I D D
Sbjct: 119 LLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDCDV 178
Query: 285 HQGNGYEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLER 340
HQG+G + N + E ++ E+ I L D YL+ ++ L
Sbjct: 179 HQGDGTARILHNTPEAVTVSLHCEKNFPARKAES-DWDIPLPNGMGDADYLKVVDDALNY 237
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
L + PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P+V + GGY
Sbjct: 238 LLPLYQPDLVLYDAGVDVHKDDALGYLKLTDEGVAARDESVMRHCLGRDIPLVGVIGGGY 297
Query: 401 LKQ 403
K
Sbjct: 298 SKD 300
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ L +S ++ +I D
Sbjct: 117 GSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDC 176
Query: 64 DAHQ 67
D HQ
Sbjct: 177 DVHQ 180
>gi|398879247|ref|ZP_10634346.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM67]
gi|398197075|gb|EJM84064.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM67]
Length = 306
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 140/300 (46%), Gaps = 26/300 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F E P D ++ + ++LV++ +++ P+
Sbjct: 2 PLPLIYHEDYSPEF-PAEHRFPMDK----------FRLLRDHLVDSGLTRDADLLRPELC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVP-NYFVQKCYLRPMRYHVGGTLEA 227
E L +AH Y++ + +S E + +P N + + +R VGG+L A
Sbjct: 51 PPEILALAHDAAYIER----YMSGELSREDQRRLGLPWNEALARRTVRA----VGGSLLA 102
Query: 228 GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQG 287
AL G + ++ GG HHA GFC + D++++ L +S ++ +I D D HQG
Sbjct: 103 AEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDCDVHQG 162
Query: 288 NGYEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
+G + N + E ++ E+ I L D YL+ ++ L L
Sbjct: 163 DGTARILHNTPDAVTVSLHCEKNFPARKAES-DWDIPLPKGMGDADYLKVVDDALNYLLP 221
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P+V + GGY K
Sbjct: 222 LYQPDLVLYDAGVDVHKDDALGYLKLTDEGVAARDESVMRHCLGRDIPVVGVIGGGYSKD 281
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ L +S ++ +I D
Sbjct: 98 GSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|433777117|ref|YP_007307584.1| deacetylase, histone deacetylase/acetoin utilization protein
[Mesorhizobium australicum WSM2073]
gi|433669132|gb|AGB48208.1| deacetylase, histone deacetylase/acetoin utilization protein
[Mesorhizobium australicum WSM2073]
Length = 300
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 134/294 (45%), Gaps = 20/294 (6%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P IV+ P+Y+ F H F K+ + L L A + N EP
Sbjct: 2 PLQIVHHPDYDAGF---ATSHRFPMSKYPLLMEALRA---RGLAGAGAL---NTAEPAPA 52
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
S L +AH Y++ + + ++ + P + LR + GGT+ A
Sbjct: 53 S--WLKLAHATDYVEQV---LGCSVPEKIEREIGFP--VGPRVSLR-AQLAAGGTVAAAR 104
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LALR G + N GG HHA +G GFC + D+++ +L + + + ++VDLD HQG+G
Sbjct: 105 LALRHGIACNTAGGSHHARRAQGAGFCTFNDVAVASLVLLEEGAAHSILVVDLDVHQGDG 164
Query: 290 YEKDFMNETRIFI--METCITSKAKE-AIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
+E R F M A++ A + L T D Y+E+++ L
Sbjct: 165 TADILGDEPRAFTFSMHGERNYPARKIASDLDVALPDGTGDAAYVERLDTILLELSAQAR 224
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
DI+ YNAG DV D LG L++S +G+ RD++V R +P+ + GGY
Sbjct: 225 WDIVFYNAGVDVHAEDRLGRLSLSDKGLRARDKMVIGHFRALGIPVCGVIGGGY 278
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LALR G + N GG HHA +G GFC + D+++ +L + + + ++VDL
Sbjct: 98 GTVAAARLALRHGIACNTAGGSHHARRAQGAGFCTFNDVAVASLVLLEEGAAHSILVVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|26991445|ref|NP_746870.1| histone deacetylase superfamily protein [Pseudomonas putida KT2440]
gi|24986520|gb|AAN70334.1|AE016675_4 histone deacetylase family protein [Pseudomonas putida KT2440]
Length = 304
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 138/298 (46%), Gaps = 22/298 (7%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F E P D + H ++LV + T ++ P
Sbjct: 2 PLPLIYHEDYSPEF-PAEHRFPMDKFRLLH----------DHLVGSGLTTDQALLRPDIC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
+ L +AH Y++ N E + +P + + R +R VGG+L
Sbjct: 51 PNDILALAHDRSYIERY---MNGELSREDQRRLGLP--WSEALARRTVRA-VGGSLLTAE 104
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
+AL+ G + ++ GG HHA GFC + D++++ + L ++ + +I D D HQG+G
Sbjct: 105 MALQHGIACHLAGGTHHAHYDHPAGFCIFNDLAVISRYLLEAGRVHRVLIFDCDVHQGDG 164
Query: 290 YEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSF 345
+ +++T I + + A + + I L D YL+ ++ L L +
Sbjct: 165 TAR-ILHDTPEAITVSLHCEQNFPARKAQSDWDIPLPRGMGDTAYLKVVDDALNYLLPLY 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD+++Y+AG DV +D LG L ++ G+ RDE V R +P++ + GGY K
Sbjct: 224 QPDLVLYDAGVDVHKDDALGYLQLTDAGVAARDEAVLRHCLGRDIPVMGVIGGGYSKD 281
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L +AL+ G + ++ GG HHA GFC + D++++ + L ++ + +I D
Sbjct: 98 GSLLTAEMALQHGIACHLAGGTHHAHYDHPAGFCIFNDLAVISRYLLEAGRVHRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|337280109|ref|YP_004619581.1| histone deacetylase [Ramlibacter tataouinensis TTB310]
gi|334731186|gb|AEG93562.1| Histone deacetylase-like protein [Ramlibacter tataouinensis TTB310]
Length = 309
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 113/242 (46%), Gaps = 18/242 (7%)
Query: 169 VSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFV-QKCYLRPMRYHVGGTLEA 227
S+ +L +AHT Y++++ + V P + F R VG T+ A
Sbjct: 46 ASDGELALAHTPGYIQAI-------SDGSVDPRIQREIGFPWSPAMAERARRSVGATISA 98
Query: 228 GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF------QSKSISTAMIVD 281
A + G + NI GG HHA KGGGFC + D ++ +L+ ++K + A IVD
Sbjct: 99 CRAAFQDGVAANIAGGTHHAYADKGGGFCVFNDAAVASRLMQAEWGRQRAKPLRVA-IVD 157
Query: 282 LDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGL 338
LD HQGNG + F + +F + KE ++L D YL +E L
Sbjct: 158 LDVHQGNGTARIFHGDPTVFTLSLHGQKNFPFRKEPSDLDVDLPDGCGDDEYLSALEGAL 217
Query: 339 ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSG 398
+ R F P +++Y AG D D LG L ++ G+ RD VF A +R VP+ +G
Sbjct: 218 DELDRRFDPGLVIYLAGADPHEGDRLGRLKLTWDGLEARDRRVFDWAWQRGVPLAFAMAG 277
Query: 399 GY 400
GY
Sbjct: 278 GY 279
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLL------FQSKSISTA 58
T+ A A + G + NI GG HHA KGGGFC + D ++ +L+ ++K + A
Sbjct: 95 TISACRAAFQDGVAANIAGGTHHAYADKGGGFCVFNDAAVASRLMQAEWGRQRAKPLRVA 154
Query: 59 MIVDLDAHQ 67
IVDLD HQ
Sbjct: 155 -IVDLDVHQ 162
>gi|90580008|ref|ZP_01235816.1| histone deacetylase/AcuC/AphA family protein [Photobacterium
angustum S14]
gi|90438893|gb|EAS64076.1| histone deacetylase/AcuC/AphA family protein [Photobacterium
angustum S14]
Length = 302
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 132/296 (44%), Gaps = 27/296 (9%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y +Y+ L + H + K++ +F ++ ++ + +I +P
Sbjct: 3 PLIYHSQYSA--LTLPEKHRYPINKYRLLFEAIF--------HSELSNKVSIHQPNRADI 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGF 229
++ H +Y+ L ++ AA + P N + + L GGT
Sbjct: 53 AKIKAIHDSEYVDDLLFNRLPAAKMR---RIGFPWSNELINRTLLS-----TGGTQLTVD 104
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL G +I++ GG+HHA G GFC + D+++ K I MI+D D H G+G
Sbjct: 105 LALEHGIAIHLSGGYHHAHHDFGSGFCLFNDLAIAAKHALSYSHIDKVMIIDCDVHHGDG 164
Query: 290 YEKDFMNETRIFIMET-CITS----KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRS 344
F + I C + K + +E T+D YL ++ L L
Sbjct: 165 TATLFADNPNIITFSVHCDKNFPARKPDSDVDLALERNTSTDD--YLTALQGVLPLLLAQ 222
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
PD+++Y+AG D+ +D LG IS QG+ +RD + +++ + +P+ + GGY
Sbjct: 223 HQPDLVIYDAGVDIHQHDELGYFDISKQGLYQRDHYILTQSKSQDIPVAAVIGGGY 278
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LAL G +I++ GG+HHA G GFC + D+++ K I MI+D
Sbjct: 98 GTQLTVDLALEHGIAIHLSGGYHHAHHDFGSGFCLFNDLAIAAKHALSYSHIDKVMIIDC 157
Query: 64 DAHQ 67
D H
Sbjct: 158 DVHH 161
>gi|456063892|ref|YP_007502862.1| histone deacetylase superfamily protein [beta proteobacterium CB]
gi|455441189|gb|AGG34127.1| histone deacetylase superfamily protein [beta proteobacterium CB]
Length = 279
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 119/252 (47%), Gaps = 15/252 (5%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
++E V++ Q+L AH YL + S N++A + + P + +K R R
Sbjct: 19 LVEAPAVTDTQILYAHDPSYLIKI-LSGNLSAKEQ--QEIGFP--WSEKMVERSRRSAGA 73
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM---I 279
A AL G + N+ GG HHA KG GFC + D ++ K L K I + I
Sbjct: 74 TLAAA-KAALNEGLAANLAGGTHHAYRDKGSGFCIFNDSAITAKAL--QKEIHQKLKVAI 130
Query: 280 VDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEA 336
+DLD HQGNG N+ IF + + KE I L +D YL +
Sbjct: 131 IDLDVHQGNGTASILQNDQSIFTLSIHGENNFPFTKERSDLDIGLPNGCQDDDYLSALNQ 190
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
GLE+ L F PD I+Y AG D D LG L+IS G+ +RD+ VF +R++P
Sbjct: 191 GLEK-LDVFKPDFIIYLAGADPHEGDRLGKLSISKDGMCQRDQYVFQYGLDRQIPTAFSM 249
Query: 397 SGGYLKQTARII 408
+GGY ++ +
Sbjct: 250 AGGYGREIQSTV 261
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 13 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM---IVDLDAHQ 67
L G + N+ GG HHA KG GFC + D ++ K L K I + I+DLD HQ
Sbjct: 82 LNEGLAANLAGGTHHAYRDKGSGFCIFNDSAITAKAL--QKEIHQKLKVAIIDLDVHQ 137
>gi|440742521|ref|ZP_20921846.1| histone deacetylase superfamily protein [Pseudomonas syringae
BRIP39023]
gi|440377358|gb|ELQ14007.1| histone deacetylase superfamily protein [Pseudomonas syringae
BRIP39023]
Length = 305
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 137/296 (46%), Gaps = 22/296 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y +Y+ F P D + F L +YL+++ + ++ P+
Sbjct: 4 PLIYHEDYSPDF-------PADHRFPMDKFRLLR----DYLIDSGLTSDVQLMRPELCPA 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ L +AH Y+ + E + +P + + R +R VGG+L A
Sbjct: 53 DILALAHDPSYINRY---LDGDLSREDQRRLGLP--WSEALARRTIRA-VGGSLLTAEQA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L+ G + ++ GG HHA GFC + D++++ + L QS S+ +I D D HQG+G
Sbjct: 107 LKHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQFLLQSGSVDKVLIFDCDVHQGDGTA 166
Query: 292 KDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ + +T I + K A + + I L D YL ++ L L + P
Sbjct: 167 R-ILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDVDYLNVVDDLLNYLLPFYKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
D+++Y+AG DV +D LG L ++ QG+ RDE V R +P++ + GGY K
Sbjct: 226 DLVLYDAGVDVHKDDALGYLQLTDQGLANRDEAVLRHCLGRDIPVMGVIGGGYSKD 281
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L AL+ G + ++ GG HHA GFC + D++++ + L QS S+ +I D
Sbjct: 98 GSLLTAEQALKHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQFLLQSGSVDKVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|300691346|ref|YP_003752341.1| histone deacetylase [Ralstonia solanacearum PSI07]
gi|299078406|emb|CBJ51057.2| Histone deacetylase [Ralstonia solanacearum PSI07]
Length = 324
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 94/190 (49%), Gaps = 7/190 (3%)
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST- 276
R G T+ A A+ G ++N+ GG HHA KGGGFC + D ++ + + + +
Sbjct: 91 RRSAGATMAACEAAMTDGIAVNLAGGTHHAYADKGGGFCVFNDAAIASRWIQRRPGRTPD 150
Query: 277 ---AMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHY 330
IVDLD HQGNG N+ +F + KEA + L D+ Y
Sbjct: 151 GFPVAIVDLDVHQGNGTASILRNDASVFTLSVHGEKNYPFRKEASDLDVGLPDGCGDEAY 210
Query: 331 LEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRV 390
LE + L+ F P +I+Y AG D D LG L ++ +G+ RRD+ VF A RR+
Sbjct: 211 LEALAGALDTLAARFAPRLIIYLAGADPHEGDRLGRLKLTMEGLARRDQQVFDFALLRRI 270
Query: 391 PIVMLTSGGY 400
PI + +GGY
Sbjct: 271 PIAVTMAGGY 280
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS----TAMI 60
T+ A A+ G ++N+ GG HHA KGGGFC + D ++ + + + + I
Sbjct: 97 TMAACEAAMTDGIAVNLAGGTHHAYADKGGGFCVFNDAAIASRWIQRRPGRTPDGFPVAI 156
Query: 61 VDLDAHQ 67
VDLD HQ
Sbjct: 157 VDLDVHQ 163
>gi|427735530|ref|YP_007055074.1| deacetylase [Rivularia sp. PCC 7116]
gi|427370571|gb|AFY54527.1| deacetylase, histone deacetylase/acetoin utilization protein
[Rivularia sp. PCC 7116]
Length = 305
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 133/301 (44%), Gaps = 22/301 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PI+Y P+Y L H F K++ ++ L L + P+ ++
Sbjct: 4 PIIYHPDYVT---PLPDAHRFPMPKFRLLYELLLSDGVADLQQFHI--------PKRPNQ 52
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
E + + HT++++ L + + A + L P + C VGGT+ A L
Sbjct: 53 EAIELVHTKEFVNGYLNGTLDTKAQRRIG-LPWSPQLVNRTCTA------VGGTILAAKL 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL +G + N GG HHA + G GFC + D ++ +++ + +IVDLD HQG+G
Sbjct: 106 ALSKGLACNTAGGTHHAFPSYGSGFCIFNDFAIATRVIQKLNLAQKILIVDLDVHQGDGT 165
Query: 291 EKDFMNETRIFIMET-CITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
F ++ +F C + K+ + L ED YL+ + L L P
Sbjct: 166 AFIFQDDDSVFTFSMHCEVNFPGRKQKSDLDVPLPEGMEDDAYLQTLAKYLPDLLVDVKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D+++++AG D + D LG LA++ GI RR+ V P+ + GGY +
Sbjct: 226 DLVLFDAGVDPHIGDKLGKLALTDTGIYRREMQVLSTCVGAGYPVACVIGGGYADDMKSL 285
Query: 408 I 408
+
Sbjct: 286 V 286
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LAL +G + N GG HHA + G GFC + D ++ +++ + +IVDL
Sbjct: 98 GTILAAKLALSKGLACNTAGGTHHAFPSYGSGFCIFNDFAIATRVIQKLNLAQKILIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|344167758|emb|CCA80001.1| Histone deacetylase [blood disease bacterium R229]
Length = 324
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 94/190 (49%), Gaps = 7/190 (3%)
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST- 276
R G T+ A A+ G ++N+ GG HHA KGGGFC + D ++ + + + +
Sbjct: 91 RRSAGATMAACEAAMTDGIAVNLAGGTHHAYADKGGGFCVFNDAAIASRWIQRRPGWTPD 150
Query: 277 ---AMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHY 330
IVDLD HQGNG N+ +F + KEA + L D+ Y
Sbjct: 151 GFPVAIVDLDVHQGNGTASILRNDASVFTLSVHGEKNYPFRKEASDLDVGLPDGCGDEAY 210
Query: 331 LEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRV 390
LE + L+ F P +I+Y AG D D LG L ++ +G+ RRD+ VF A RR+
Sbjct: 211 LEALAGALDTLAARFAPRLIIYLAGADPHEGDRLGRLKLTMEGLARRDQQVFDFALLRRI 270
Query: 391 PIVMLTSGGY 400
PI + +GGY
Sbjct: 271 PIAVTMAGGY 280
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS----TAMI 60
T+ A A+ G ++N+ GG HHA KGGGFC + D ++ + + + + I
Sbjct: 97 TMAACEAAMTDGIAVNLAGGTHHAYADKGGGFCVFNDAAIASRWIQRRPGWTPDGFPVAI 156
Query: 61 VDLDAHQ 67
VDLD HQ
Sbjct: 157 VDLDVHQ 163
>gi|402698355|ref|ZP_10846334.1| histone deacetylase [Pseudomonas fragi A22]
Length = 306
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 141/298 (47%), Gaps = 22/298 (7%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F E P D ++ + ++LV++ +++ P+
Sbjct: 2 PLPLIYHDDYSPEF-PAEHRFPMDK----------FRLLRDHLVQSGLTRDADLLRPELC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
+ L +AH Y++ ++ A + L +P + + R +R VGG+L A
Sbjct: 51 PVDILALAHDRAYIE--RYMAGELAREDQRRL-GLP--WSEALARRTIRA-VGGSLLAAE 104
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
AL G + ++ GG HHA GFC + D++++ + L +S ++ +I D D HQG+G
Sbjct: 105 QALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISRYLLESGRVNRVLIFDCDVHQGDG 164
Query: 290 YEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSF 345
+ + T I + K A + + I L D YL+ ++ L L +
Sbjct: 165 TAR-ILEHTPDAITVSLHCEKNFPARKAQSDWDIGLPMGMGDTEYLQVVDDALNYLLALY 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD+++Y+AG DV +D LG L ++ G+ RDE V R +P+V + GGY K
Sbjct: 224 QPDLVLYDAGVDVHKDDALGYLKLTDAGVAARDESVMRHCLGRDIPVVGVIGGGYSKD 281
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ + L +S ++ +I D
Sbjct: 98 GSLLAAEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISRYLLESGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|145354637|ref|XP_001421586.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581824|gb|ABO99879.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 323
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 129/265 (48%), Gaps = 16/265 (6%)
Query: 144 LWKHIFNYLVEAKFIT--QDNIIEPQEV-SEEQLLIAHTEKYLKSLKWSFNVAAISEVCP 200
+++ + + L E I Q N P S ++L AH E Y++ ++ S A ++
Sbjct: 40 VFQRVHDILREEGVIARGQTNCFVPGRAPSVDELCRAHDEDYVRDVRAS---ALDAKRER 96
Query: 201 LVAVP--NYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAY 258
+ +P + V++ + V GT+ LA++ G +N GG HHA +G GFC
Sbjct: 97 EIGLPWSDALVERTLME-----VSGTMLTVDLAMKVGLCVNTAGGTHHAHRDRGSGFCIV 151
Query: 259 ADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK--AKEAIR 316
D+++ S ++S MI+DLD HQG+G NE +F S A++
Sbjct: 152 NDLAVSALRAIDSGAVSRVMIIDLDVHQGDGTAAILANEPGVFTFSAHAKSNFPARKQQS 211
Query: 317 CR-IELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGII 375
R +EL D Y+ + A + SL F P++++Y+AG DV ND LG L ++ +G+
Sbjct: 212 TRDVELPRGMTDDAYMAVVAAAMRESLEDFRPELVIYDAGVDVTSNDTLGHLDLTVEGLY 271
Query: 376 RRDELVFMKARERRVPIVMLTSGGY 400
RR+ +V +P+ + GGY
Sbjct: 272 RRERMVMDTVLGAGIPLAGVVGGGY 296
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LA++ G +N GG HHA +G GFC D+++ S ++S MI+DL
Sbjct: 116 GTMLTVDLAMKVGLCVNTAGGTHHAHRDRGSGFCIVNDLAVSALRAIDSGAVSRVMIIDL 175
Query: 64 DAHQ 67
D HQ
Sbjct: 176 DVHQ 179
>gi|398996125|ref|ZP_10698987.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM21]
gi|398127661|gb|EJM17067.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM21]
Length = 325
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 139/302 (46%), Gaps = 24/302 (7%)
Query: 107 VTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEP 166
+ P P++Y +Y+ F P D + F L H LV++ +++ P
Sbjct: 18 IIMPLPLIYHEDYSPEF-------PADHRFPMDKFRLLRDH----LVDSGLTRDADLLRP 66
Query: 167 QEVSEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGGTL 225
+ + L +AH Y++ + +S E + +P + + R +R VGG+L
Sbjct: 67 ELCPAQILALAHDAAYIER----YMSGELSREDQRRLGLP--WSEALARRTVRA-VGGSL 119
Query: 226 EAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAH 285
A AL G + ++ GG HHA GFC + D++++ L +S ++ +I D D H
Sbjct: 120 LAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDCDVH 179
Query: 286 QGNGYEKDFMNE----TRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERS 341
QG+G + N T E ++ E+ I L D YL+ ++ L
Sbjct: 180 QGDGTARILHNTPDAVTVSLHCEKNFPARKAES-DWDIPLPKGMGDADYLKVVDDALNYL 238
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYL 401
L + PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P+V + GGY
Sbjct: 239 LPLYQPDLVLYDAGVDVHKDDALGYLKLTDEGVAARDESVMRHCLGRDIPVVGVIGGGYS 298
Query: 402 KQ 403
K
Sbjct: 299 KD 300
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ L +S ++ +I D
Sbjct: 117 GSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDC 176
Query: 64 DAHQ 67
D HQ
Sbjct: 177 DVHQ 180
>gi|383643074|ref|ZP_09955480.1| histone deacetylase superfamily protein [Sphingomonas elodea ATCC
31461]
Length = 313
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 98/207 (47%), Gaps = 10/207 (4%)
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 281
GGT A LA R G++ N GG HHA G G+C + D+++ L + + +IVD
Sbjct: 94 GGTFLAARLAQREGFAANSAGGSHHALADTGAGYCVFNDLAIAAVRLVEEGHAARVLIVD 153
Query: 282 LDAHQGNGYEKDFMNETRIFIMETCITSKAKEAIR-----CRIELAPYTEDQHYLEKIEA 336
D HQG+G + R I I ++ +R + L T D YLE +EA
Sbjct: 154 CDVHQGDGTAA--LTAGRPEIATYSIHAEKNFPVRKARSTLDVGLPDGTGDAEYLETLEA 211
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
L L F PD+++Y AG D D LG L +S +G+I RD V R R +P
Sbjct: 212 TLVPLLTGFDPDLVLYQAGVDPFAEDRLGRLGLSGEGLIARDRWVADTLRRRGIPFASTL 271
Query: 397 SGGY---LKQTARIIADSILNLADLGL 420
GGY + AR A SIL L + L
Sbjct: 272 GGGYGVDALEVARRHATSILTLGEAAL 298
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A LA R G++ N GG HHA G G+C + D+++ L + + +IVD
Sbjct: 95 GTFLAARLAQREGFAANSAGGSHHALADTGAGYCVFNDLAIAAVRLVEEGHAARVLIVDC 154
Query: 64 DAHQ 67
D HQ
Sbjct: 155 DVHQ 158
>gi|148549841|ref|YP_001269943.1| histone deacetylase superfamily protein [Pseudomonas putida F1]
gi|148513899|gb|ABQ80759.1| histone deacetylase superfamily [Pseudomonas putida F1]
Length = 317
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 137/298 (45%), Gaps = 22/298 (7%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F E P D + H ++LV + T ++ P
Sbjct: 15 PLPLIYHEDYSPEF-PAEHRFPMDKFRLLH----------DHLVGSGLTTDQALLRPDIC 63
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
+ L +AH Y++ N E + +P + + R +R VGG+L
Sbjct: 64 PNDILALAHDRSYIERY---MNGELSREDQRRLGLP--WSEALARRTVRA-VGGSLLTAE 117
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
+AL+ G + ++ GG HHA GFC + D++++ + L ++ + +I D D HQG+G
Sbjct: 118 MALQHGIACHLAGGTHHAHYDHPAGFCIFNDLAVISRYLLEAGRVHRVLIFDCDVHQGDG 177
Query: 290 YEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSF 345
+ +++T I + + A + + I L D YL ++ L L +
Sbjct: 178 TAR-ILHDTPEAITVSLHCEQNFPARKAQSDWDIPLPRGMGDTAYLRVVDDALNYLLPLY 236
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD+++Y+AG DV +D LG L ++ G+ RDE V R +P++ + GGY K
Sbjct: 237 QPDLVLYDAGVDVHKDDALGYLQLTDAGVAARDEAVLRHCLGRDIPVMGVIGGGYSKD 294
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L +AL+ G + ++ GG HHA GFC + D++++ + L ++ + +I D
Sbjct: 111 GSLLTAEMALQHGIACHLAGGTHHAHYDHPAGFCIFNDLAVISRYLLEAGRVHRVLIFDC 170
Query: 64 DAHQ 67
D HQ
Sbjct: 171 DVHQ 174
>gi|372210259|ref|ZP_09498061.1| histone deacetylase [Flavobacteriaceae bacterium S85]
Length = 300
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 128/299 (42%), Gaps = 20/299 (6%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
I Y P Y L+K H F +K+ I L Y F +N +P + +
Sbjct: 4 IAYHPCYE---HPLKKGHRFPMEKYDLIPKQLM-----YEGTCDF---ENFFKPLKANFC 52
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
L+ AHTE Y+ L N+ E P + K + GT++ + AL
Sbjct: 53 DLIEAHTEAYVNRL---LNLQLTKEEIRQSGFP---LSKQIVDRELIITQGTIDCSYYAL 106
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
G ++N+ GG HHA + FC D ++ L +++ +IVDLD HQGNG +
Sbjct: 107 EYGIAMNVAGGTHHAYSNRPDPFCYLNDQAVGATYLLKNRLAKKVLIVDLDVHQGNGTAE 166
Query: 293 DFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDI 349
F N +F KE I L D YL ++ L + L+ PD
Sbjct: 167 IFRNTPEVFTFSMHGKHNYPFEKEISDLDIGLENNCTDDEYLSTLKQVLPKLLKEQQPDF 226
Query: 350 IVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
+ Y +G D+L +D LG LA S +G RD+ V E +P+V GGY K+ I+
Sbjct: 227 VFYQSGVDILASDKLGKLACSIEGCKDRDQFVLETFFELNIPVVCCMGGGYSKELRTIV 285
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++ + AL G ++N+ GG HHA + FC D ++ L +++ +IVDL
Sbjct: 97 GTIDCSYYALEYGIAMNVAGGTHHAYSNRPDPFCYLNDQAVGATYLLKNRLAKKVLIVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|398339724|ref|ZP_10524427.1| histone deacetylase [Leptospira kirschneri serovar Bim str. 1051]
Length = 293
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 140/296 (47%), Gaps = 26/296 (8%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
+VY P+YN+ H F ++K++ +++ + + ++K ++ I +P +
Sbjct: 1 MVYHPDYNLDL----GPHVFPARKYQMVYDLVKR-------DSK-LSNLYIYKPDLAKTK 48
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
L + HT+++L F I+E +P + K + VGGT+ + L
Sbjct: 49 DLSLVHTQEFLDD----FFSLKITERTQYSELP---LTKQIVHSFVLAVGGTILSMELTQ 101
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
+ + +IGGGFHH+ + GFC D ++ KL + + +DLD HQGNG
Sbjct: 102 KYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIASKLYQKEYPGKKILFIDLDLHQGNGNSF 161
Query: 293 DFMNETRIFI--METCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
F ++ +F M KE I L T+D+ YLE ++ L + F PD+I
Sbjct: 162 VFQDDPDVFTFSMHQENLYPKKEKSDLDISLEEGTDDKEYLELLKKSLHKIESDFKPDLI 221
Query: 351 VYNAGTDVLLNDPLGLLAISPQGIIRRDELV---FMKARERRVPIVMLTSGGYLKQ 403
Y AG D D LG L ++ QG+ +RD+++ + RV V+L +GGY K
Sbjct: 222 FYIAGADPFEGDSLGDLKLTFQGLRKRDQIIRDFVYSLNDTRV--VILPAGGYAKD 275
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ + L + + +IGGGFHH+ + GFC D ++ KL + + +DL
Sbjct: 92 GTILSMELTQKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIASKLYQKEYPGKKILFIDL 151
Query: 64 DAHQ 67
D HQ
Sbjct: 152 DLHQ 155
>gi|89889818|ref|ZP_01201329.1| deacetylase [Flavobacteria bacterium BBFL7]
gi|89518091|gb|EAS20747.1| deacetylase [Flavobacteria bacterium BBFL7]
Length = 308
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 118/260 (45%), Gaps = 16/260 (6%)
Query: 159 TQDNIIEPQEV-SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPM 217
Q + EP ++ S+ +L HT +YLK+LK + N+ + + N V++
Sbjct: 40 NQTDFFEPSKLCSDTDVLRVHTSEYLKNLK-ALNLDRKAARKLGFPLNNQLVER-----E 93
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
Y GT++ A ++NI GG HHA G FC D ++ + + +
Sbjct: 94 LYIAQGTIDGCIKAFEYNIAMNIAGGTHHAYTDHGEAFCLLNDQAIAARYIQHHQLADKI 153
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
+IVDLD HQGNG + F N+ +F S KE I L +T+D YL ++
Sbjct: 154 LIVDLDVHQGNGTAEIFRNDDSVFTFSMHGASNYPFKKEISDLDIALPDHTDDSSYLNEL 213
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDEL---VFMKARER--- 388
L + PD I Y G DVL D LG L +S G RRDE F KAR +
Sbjct: 214 HHILPDLIAQEKPDFIFYLCGVDVLATDKLGRLGMSLAGCKRRDEYALSAFAKARTQKNN 273
Query: 389 RVPIVMLTSGGYLKQTARII 408
R+P+ GGY + II
Sbjct: 274 RIPVQCSMGGGYSPEIKFII 293
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++ A ++NI GG HHA G FC D ++ + + + +IVDL
Sbjct: 99 GTIDGCIKAFEYNIAMNIAGGTHHAYTDHGEAFCLLNDQAIAARYIQHHQLADKILIVDL 158
Query: 64 DAHQ 67
D HQ
Sbjct: 159 DVHQ 162
>gi|418678733|ref|ZP_13240007.1| histone deacetylase family protein [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418687687|ref|ZP_13248846.1| histone deacetylase family protein [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418741912|ref|ZP_13298285.1| histone deacetylase family protein [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|421129283|ref|ZP_15589484.1| histone deacetylase family protein [Leptospira kirschneri str.
2008720114]
gi|400321923|gb|EJO69783.1| histone deacetylase family protein [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|410359479|gb|EKP06577.1| histone deacetylase family protein [Leptospira kirschneri str.
2008720114]
gi|410738011|gb|EKQ82750.1| histone deacetylase family protein [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410750270|gb|EKR07250.1| histone deacetylase family protein [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 302
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 140/296 (47%), Gaps = 26/296 (8%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
+VY P+YN+ H F ++K++ +++ + + ++K ++ I +P +
Sbjct: 10 LVYHPDYNLDL----GPHVFPARKYQMVYDLVKR-------DSK-LSNLYIYKPDLAKTK 57
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
L + HT+++L F I+E +P + K + VGGT+ + L
Sbjct: 58 DLSLVHTQEFLDD----FFSLKITERTQYSELP---LTKQIVHSFVLAVGGTILSMELTQ 110
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
+ + +IGGGFHH+ + GFC D ++ KL + + +DLD HQGNG
Sbjct: 111 KYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIASKLYQKEYPGKKILFIDLDLHQGNGNSF 170
Query: 293 DFMNETRIFI--METCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
F ++ +F M KE I L T+D+ YLE ++ L + F PD+I
Sbjct: 171 VFQDDPDVFTFSMHQENLYPKKEKSDLDISLEEGTDDKEYLELLKKSLHKIESDFKPDLI 230
Query: 351 VYNAGTDVLLNDPLGLLAISPQGIIRRDELV---FMKARERRVPIVMLTSGGYLKQ 403
Y AG D D LG L ++ QG+ +RD+++ + RV V+L +GGY K
Sbjct: 231 FYIAGADPFEGDSLGDLKLTFQGLRKRDQIIRDFVYSLNDTRV--VILPAGGYAKD 284
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ + L + + +IGGGFHH+ + GFC D ++ KL + + +DL
Sbjct: 101 GTILSMELTQKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIASKLYQKEYPGKKILFIDL 160
Query: 64 DAHQ 67
D HQ
Sbjct: 161 DLHQ 164
>gi|386014013|ref|YP_005932290.1| Histone deacetylase superfamily [Pseudomonas putida BIRD-1]
gi|313500719|gb|ADR62085.1| Histone deacetylase superfamily [Pseudomonas putida BIRD-1]
Length = 304
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 137/298 (45%), Gaps = 22/298 (7%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F E P D + H ++LV + T ++ P
Sbjct: 2 PLPLIYHEDYSPEF-PAEHRFPMDKFRLLH----------DHLVGSGLTTDQALLRPDIC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
+ L +AH Y+ N E + +P + + R +R VGG+L
Sbjct: 51 PNDILALAHDRSYIARY---MNGELSREDQRRLGLP--WSEALARRTVRA-VGGSLLTAE 104
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
+AL+ G + ++ GG HHA GFC + D++++ + L ++ + +I D D HQG+G
Sbjct: 105 MALQHGIACHLAGGTHHAHYDHPAGFCIFNDLAVISRYLLEAGRVHRVLIFDCDVHQGDG 164
Query: 290 YEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSF 345
+ +++T I + + A + + I L D YL+ ++ L L +
Sbjct: 165 TAR-ILHDTPEAITVSLHCEQNFPARKAQSDWDIPLPRGMGDTAYLKVVDDALNYLLPLY 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD+++Y+AG DV +D LG L ++ G+ RDE V R +P++ + GGY K
Sbjct: 224 QPDLVLYDAGVDVHKDDALGYLQLTDAGVAARDEAVLRHCLGRDIPVMGVIGGGYSKD 281
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L +AL+ G + ++ GG HHA GFC + D++++ + L ++ + +I D
Sbjct: 98 GSLLTAEMALQHGIACHLAGGTHHAHYDHPAGFCIFNDLAVISRYLLEAGRVHRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|398852713|ref|ZP_10609361.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM80]
gi|398243287|gb|EJN28878.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM80]
Length = 306
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 140/300 (46%), Gaps = 26/300 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F P D + F L H LV++ +++ P+
Sbjct: 2 PLPLIYHEDYSPEF-------PADHRFPMDKFRLLRDH----LVDSGLTRDADLLRPEIC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVP-NYFVQKCYLRPMRYHVGGTLEA 227
+ L +AH Y++ + +S E + +P N + + +R VGG++ A
Sbjct: 51 PNDILALAHDRAYIER----YMSGELSREDQRRLGLPWNEALARRTVRA----VGGSILA 102
Query: 228 GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQG 287
AL G + ++ GG HHA GFC + D++++ L QS ++ +I D D HQG
Sbjct: 103 AEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAIISHYLLQSGRVNRVLIFDCDVHQG 162
Query: 288 NGYEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLR 343
+G + +++T I + K A + I L D YL+ ++ L L
Sbjct: 163 DGTAR-ILHDTPEAITVSLHCEKNFPARKAESDWDIPLPKGMGDGDYLKVVDDTLNYLLP 221
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P++ + GGY K
Sbjct: 222 LYQPDLVLYDAGVDVHKDDALGYLQLTDEGVAARDESVMRHCLGRDIPVMSVIGGGYSKD 281
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ A AL G + ++ GG HHA GFC + D++++ L QS ++ +I D
Sbjct: 98 GSILAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAIISHYLLQSGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|409405465|ref|ZP_11253927.1| deacetylase [Herbaspirillum sp. GW103]
gi|386434014|gb|EIJ46839.1| deacetylase [Herbaspirillum sp. GW103]
Length = 282
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 109/248 (43%), Gaps = 9/248 (3%)
Query: 165 EPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGT 224
E Q S+ +L +AH Y+ +A P V++ R G T
Sbjct: 22 EAQPASDGELALAHHPDYIARASAGQLTSAEQREIGFPWSPQ-MVERS-----RRSSGAT 75
Query: 225 LEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDA 284
+ A A G ++N+ GG HHA G GFC + D ++ +L+ + + IVDLD
Sbjct: 76 IAACRAAFSEGLAVNLAGGTHHAYADHGAGFCVFNDAAIAARLMQAERRAARVAIVDLDV 135
Query: 285 HQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERS 341
HQGNG + +F + + KE + L D YL+ + L
Sbjct: 136 HQGNGTASILARDESVFTLSLHGQNNYPFEKEQSDLDVALPDGVGDADYLQALRLALHTL 195
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYL 401
+ F P +++Y AG D D LG + +S G+ RDE VF A E ++P+ + +GGY
Sbjct: 196 QQRFAPQLLIYLAGADPHEGDRLGKMKLSLAGLAARDETVFGYAHEHKIPVAVTMAGGYG 255
Query: 402 KQTARIIA 409
+ + +A
Sbjct: 256 RDIEQTVA 263
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
T+ A A G ++N+ GG HHA G GFC + D ++ +L+ + + IVDLD
Sbjct: 75 TIAACRAAFSEGLAVNLAGGTHHAYADHGAGFCVFNDAAIAARLMQAERRAARVAIVDLD 134
Query: 65 AHQ 67
HQ
Sbjct: 135 VHQ 137
>gi|395445593|ref|YP_006385846.1| histone deacetylase superfamily protein [Pseudomonas putida ND6]
gi|388559590|gb|AFK68731.1| histone deacetylase superfamily protein [Pseudomonas putida ND6]
Length = 317
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 137/298 (45%), Gaps = 22/298 (7%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F E P D + H ++LV + T ++ P
Sbjct: 15 PLPLIYHEDYSPEF-PAEHRFPMDKFRLLH----------DHLVGSGLTTDQALLRPDIC 63
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
+ L +AH Y+ N E + +P + + R +R VGG+L
Sbjct: 64 PNDILALAHDRSYIARY---MNGELSREDQRRLGLP--WSEALARRTVRA-VGGSLLTAE 117
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
+AL+ G + ++ GG HHA GFC + D++++ + L ++ + +I D D HQG+G
Sbjct: 118 MALQHGIACHLAGGTHHAHYDHPAGFCIFNDLAVISRYLLEAGRVHRVLIFDCDVHQGDG 177
Query: 290 YEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSF 345
+ +++T I + + A + + I L D YL+ ++ L L +
Sbjct: 178 TAR-ILHDTPEAITVSLHCEQNFPARKAQSDWDIPLPRGMGDTAYLKVVDDALNYLLPLY 236
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD+++Y+AG DV +D LG L ++ G+ RDE V R +P++ + GGY K
Sbjct: 237 QPDLVLYDAGVDVHKDDALGYLQLTDAGVAARDEAVLRHCLGRDIPVMGVIGGGYSKD 294
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L +AL+ G + ++ GG HHA GFC + D++++ + L ++ + +I D
Sbjct: 111 GSLLTAEMALQHGIACHLAGGTHHAHYDHPAGFCIFNDLAVISRYLLEAGRVHRVLIFDC 170
Query: 64 DAHQ 67
D HQ
Sbjct: 171 DVHQ 174
>gi|320333724|ref|YP_004170435.1| histone deacetylase [Deinococcus maricopensis DSM 21211]
gi|319755013|gb|ADV66770.1| Histone deacetylase [Deinococcus maricopensis DSM 21211]
Length = 310
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 85/187 (45%), Gaps = 3/187 (1%)
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 281
G TL A A R GW +N GGG HHA GF D+ + + +I+D
Sbjct: 105 GATLAATHDARRTGWGVNFGGGTHHAYRDHAEGFSFLNDVVISAARALADGWATRVLILD 164
Query: 282 LDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGL 338
LD HQGNG E R F + KE + L T+D YL +
Sbjct: 165 LDVHQGNGTAAMLAGEPRAFTLSVHAERNYPFRKERSTLDLALPDGTDDAAYLRVLHEAA 224
Query: 339 ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSG 398
+ +F PD++ Y AG DVL D LG LA+S G+ RD VF AR VP+V + +G
Sbjct: 225 LPAAAAFTPDLLFYLAGADVLAGDQLGRLALSEAGLYARDHAVFTWARGLGVPLVTVMAG 284
Query: 399 GYLKQTA 405
GY A
Sbjct: 285 GYNHDAA 291
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
TL A A R GW +N GGG HHA GF D+ + + +I+DLD
Sbjct: 107 TLAATHDARRTGWGVNFGGGTHHAYRDHAEGFSFLNDVVISAARALADGWATRVLILDLD 166
Query: 65 AHQFSDYYF-----PSAH--SIKRKRKVEFLKERKALE 95
HQ + P A S+ +R F KER L+
Sbjct: 167 VHQGNGTAAMLAGEPRAFTLSVHAERNYPFRKERSTLD 204
>gi|426411628|ref|YP_007031727.1| histone deacetylase superfamily protein [Pseudomonas sp. UW4]
gi|426269845|gb|AFY21922.1| histone deacetylase superfamily protein [Pseudomonas sp. UW4]
Length = 306
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 137/298 (45%), Gaps = 22/298 (7%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F P D + F L H LV++ +++ P
Sbjct: 2 PLPLIYHEDYSPEF-------PADHRFPMEKFRLLRDH----LVDSGLTRDADLLRPDLC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
+ L +AH Y+ S +++ E + +P + + R +R VGG+L A
Sbjct: 51 PADILALAHDPSYIDRY-MSGDLS--REDQRRLGLP--WTEALARRTVRA-VGGSLLAAE 104
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
AL G + ++ GG HHA GFC + D++++ L +S ++ +I D D HQG+G
Sbjct: 105 QALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDCDVHQGDG 164
Query: 290 YEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
+ N + E ++ E+ I L D YL+ ++ L L +
Sbjct: 165 TARILHNTPEAVTVSLHCEKNFPARKAES-DWDIPLPNGMGDADYLKVVDDALNYLLPLY 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P+V + GGY K
Sbjct: 224 QPDLVLYDAGVDVHKDDALGYLKLTDEGVAARDESVMRHCLGRDIPLVGVIGGGYSKD 281
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ L +S ++ +I D
Sbjct: 98 GSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|443318867|ref|ZP_21048109.1| deacetylase, histone deacetylase/acetoin utilization protein
[Leptolyngbya sp. PCC 6406]
gi|442781505|gb|ELR91603.1| deacetylase, histone deacetylase/acetoin utilization protein
[Leptolyngbya sp. PCC 6406]
Length = 278
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 108/243 (44%), Gaps = 9/243 (3%)
Query: 161 DNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH 220
D I +P + L HT Y+ + + L PN + C
Sbjct: 20 DQIYQPGAPLADWLQRVHTPAYVTAYCQGTLDSQAQRRIGLPWSPNLVRRTCTA------ 73
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
VGGT+ LAL G + N GG HHA G GFC + D+++ ++L + +IV
Sbjct: 74 VGGTILTAKLALNYGLACNTAGGTHHAFPDHGAGFCIFNDLAIAARILLDQNLVQRILIV 133
Query: 281 DLDAHQGNGYEKDFMNETRI--FIMETCITSKAKEAIRCR-IELAPYTEDQHYLEKIEAG 337
DLD HQG+G F ++ R+ F M + + I R + L D+ YL +++
Sbjct: 134 DLDVHQGDGTAWIFRDDPRVVTFSMHCAVNFPRLKQISDRDVPLPEGLGDEDYLRQLQTH 193
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L L PD+++Y+AG D D LG LA++ G+ RD V + P+ +
Sbjct: 194 LPDLLSQVRPDLVLYDAGVDTHQGDRLGKLAMTNTGLYERDRWVLKTCIQAGYPVACVIG 253
Query: 398 GGY 400
GGY
Sbjct: 254 GGY 256
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G + N GG HHA G GFC + D+++ ++L + +IVDL
Sbjct: 76 GTILTAKLALNYGLACNTAGGTHHAFPDHGAGFCIFNDLAIAARILLDQNLVQRILIVDL 135
Query: 64 DAHQ 67
D HQ
Sbjct: 136 DVHQ 139
>gi|399000980|ref|ZP_10703700.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM18]
gi|398128735|gb|EJM18117.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM18]
Length = 306
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 139/299 (46%), Gaps = 24/299 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F E P D ++ + ++LV++ +++ P
Sbjct: 2 PLPLIYHEDYSPEF-PAEHRFPMDK----------FRLLRDHLVDSGLTRDTDLLRPDLC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAG 228
+ L +AH Y++ + +S E + +P + + R +R VGG+L A
Sbjct: 51 PADILALAHDPAYIER----YMSGELSREDQRRLGLP--WSEALARRTVRA-VGGSLLAA 103
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
AL G + ++ GG HHA GFC + D++++ L +S ++ +I D D HQG+
Sbjct: 104 EQALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISHYLLESGRVNRVLIFDCDVHQGD 163
Query: 289 GYEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRS 344
G + N + E ++ E+ I L D YL+ ++ L L
Sbjct: 164 GTARILHNTPEAVTVSLHCEKNFPARKAES-DWDIPLPMGMGDADYLKVVDDALNYLLPL 222
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P+V + GGY K
Sbjct: 223 YQPDLVLYDAGVDVHKDDALGYLKLTDEGVAARDERVMRHCLGRDIPVVGVIGGGYSKD 281
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ L +S ++ +I D
Sbjct: 98 GSLLAAEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISHYLLESGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|300864305|ref|ZP_07109183.1| histone deacetylase superfamily protein [Oscillatoria sp. PCC 6506]
gi|300337694|emb|CBN54329.1| histone deacetylase superfamily protein [Oscillatoria sp. PCC 6506]
Length = 305
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 93/191 (48%), Gaps = 3/191 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
VGGT+ LA+ G + N GG HHA + G GFC + D+++ +LL + + +IV
Sbjct: 96 VGGTILTAQLAISHGIACNTAGGTHHAFPSYGSGFCIFNDLAIASRLLQKMGLVQKVLIV 155
Query: 281 DLDAHQGNGYEKDFMNETRIFIMET-CITS--KAKEAIRCRIELAPYTEDQHYLEKIEAG 337
DLD HQG+G F +++ +F C + K+ + L ED YL+ +
Sbjct: 156 DLDVHQGDGTAVIFQDDSSVFTFSMHCEVNFPGTKQQSDLDVSLPVGMEDDEYLQTLAKY 215
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L L PD+++Y+AG D D LG LA++ G+ RRD V R P+
Sbjct: 216 LPDLLSDVNPDLVLYDAGVDPHKGDKLGKLALTDTGLFRRDMQVLSTCLAGRYPVACAIG 275
Query: 398 GGYLKQTARII 408
GGY ++
Sbjct: 276 GGYCDDMNGLV 286
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LA+ G + N GG HHA + G GFC + D+++ +LL + + +IVDL
Sbjct: 98 GTILTAQLAISHGIACNTAGGTHHAFPSYGSGFCIFNDLAIASRLLQKMGLVQKVLIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|422616032|ref|ZP_16684739.1| histone deacetylase superfamily protein [Pseudomonas syringae pv.
japonica str. M301072]
gi|440722310|ref|ZP_20902692.1| histone deacetylase superfamily protein [Pseudomonas syringae
BRIP34876]
gi|440726023|ref|ZP_20906281.1| histone deacetylase superfamily protein [Pseudomonas syringae
BRIP34881]
gi|443642248|ref|ZP_21126098.1| Histone deacetylase family protein [Pseudomonas syringae pv.
syringae B64]
gi|330895528|gb|EGH27838.1| histone deacetylase superfamily protein [Pseudomonas syringae pv.
japonica str. M301072]
gi|440361499|gb|ELP98726.1| histone deacetylase superfamily protein [Pseudomonas syringae
BRIP34876]
gi|440367406|gb|ELQ04469.1| histone deacetylase superfamily protein [Pseudomonas syringae
BRIP34881]
gi|443282265|gb|ELS41270.1| Histone deacetylase family protein [Pseudomonas syringae pv.
syringae B64]
Length = 305
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 141/296 (47%), Gaps = 22/296 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y +Y+ F + P D ++ + +YL+++ + ++ P+
Sbjct: 4 PLIYHEDYSPEFPADHRF-PMDK----------FRLLRDYLIDSGLTSDVQLMRPELCPA 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ L +AH Y+ S S +++ E + +P + + R +R VGG+L A
Sbjct: 53 DILALAHDPSYI-SRYLSGDLS--REDQRRLGLP--WSEALARRTIRA-VGGSLLTAEQA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L+ G + ++ GG HHA GFC + D++++ + L QS + +I D D HQG+G
Sbjct: 107 LKHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQGDGTA 166
Query: 292 KDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ + +T I + K A + + I L D YL ++ L L + P
Sbjct: 167 R-ILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVVDDLLNYLLPFYKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
D+++Y+AG DV +D LG L ++ QG+ RDE V R +P++ + GGY K
Sbjct: 226 DLVLYDAGVDVHKDDALGYLQLTDQGLANRDEAVLRHCLSRDIPVMGVIGGGYSKD 281
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L AL+ G + ++ GG HHA GFC + D++++ + L QS + +I D
Sbjct: 98 GSLLTAEQALKHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|428224317|ref|YP_007108414.1| histone deacetylase [Geitlerinema sp. PCC 7407]
gi|427984218|gb|AFY65362.1| Histone deacetylase [Geitlerinema sp. PCC 7407]
Length = 305
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 128/293 (43%), Gaps = 22/293 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P+Y + L H F K++ ++ L ++ +P+ +
Sbjct: 4 PLVYHPDYVI---PLPAGHRFPMAKFRLLYESL--------IQDGVAHASQFHQPEYPTP 52
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
E L H Y+++ + + + A + +P +R VGGTL +
Sbjct: 53 EILAHVHGPDYIQAYCEGTLDAKAQRRI----GLP---WSSALVRRTCTAVGGTLLTARM 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G + N GG HHA G GFC + D+++ ++L + +IVDLD HQG+G
Sbjct: 106 ALEHGLACNTAGGTHHAFPNHGSGFCIFNDLAIAARVLQAEGVVQKVLIVDLDVHQGDGT 165
Query: 291 EKDFMNETRIFIMET-CITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
F ++ +F C + K+ + L ED YL+ + L L P
Sbjct: 166 ALIFQDDPSVFTFSMHCEVNFPGTKQRSDLDVPLPEGLEDDAYLQTLAQYLPDLLSQVKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
D+++Y+AG D + D LG LA++ G+ RRD V P+ + GGY
Sbjct: 226 DLVLYDAGADPHVGDRLGKLALTDSGLYRRDMQVLSTCLGSGYPVASVIGGGY 278
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL +AL G + N GG HHA G GFC + D+++ ++L + +IVDL
Sbjct: 98 GTLLTARMALEHGLACNTAGGTHHAFPNHGSGFCIFNDLAIAARVLQAEGVVQKVLIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|170078236|ref|YP_001734874.1| histone deacetylase/AcuC/AphA family protein [Synechococcus sp. PCC
7002]
gi|190358879|sp|P28606.2|Y1628_SYNP2 RecName: Full=Uncharacterized protein SYNPCC7002_A1628
gi|169885905|gb|ACA99618.1| histone deacetylase/AcuC/AphA family protein [Synechococcus sp. PCC
7002]
Length = 300
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 130/316 (41%), Gaps = 50/316 (15%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
+P+VY P+Y + + H F K++ + L +E I + + +PQ
Sbjct: 3 FPVVYHPDY---VTPIPEEHRFPMPKFRLLHGLL--------LEDGVIQPEQVYQPQLPD 51
Query: 171 EEQLLIAHTEKYLKS---------------LKWSFNVAAISEVCPLVAVPNYFVQKCYLR 215
L + H Y+ + L WS V VQ+
Sbjct: 52 RAWLELVHEPDYVTAYCQGTLTPKAQRRIGLPWSAGV----------------VQRTLTA 95
Query: 216 PMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS 275
VGGT+ LAL G + N GG HHA G GFC D+++ + + Q
Sbjct: 96 -----VGGTILTAQLALEHGLACNTAGGTHHAFPGYGSGFCILNDLAIATRTIQQRGLAQ 150
Query: 276 TAMIVDLDAHQGNGYEKDFMNETRIFIMET-CITSKAKEAIRCRIELA--PYTEDQHYLE 332
+IVDLD HQG+G F ++ +F C + + R ++L +D YL+
Sbjct: 151 RILIVDLDVHQGDGTAFIFQDDPTVFTFSMHCEVNFPSQKQRSDLDLGLPEGLDDDGYLQ 210
Query: 333 KIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPI 392
+ LE L PD++ Y+AG D + D LG LA++ G+ RR+ LV P+
Sbjct: 211 ILAHHLEDLLSQVKPDLVFYDAGVDTHVGDRLGKLAMTNTGLYRRERLVLSTCLAAGYPV 270
Query: 393 VMLTSGGYLKQTARII 408
+ GGY K ++
Sbjct: 271 ACVIGGGYAKNIHDLV 286
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G + N GG HHA G GFC D+++ + + Q +IVDL
Sbjct: 98 GTILTAQLALEHGLACNTAGGTHHAFPGYGSGFCILNDLAIATRTIQQRGLAQRILIVDL 157
Query: 64 DAHQFSDYYF-----PSAHSIKRKRKVEFLKERK 92
D HQ F P+ + +V F +++
Sbjct: 158 DVHQGDGTAFIFQDDPTVFTFSMHCEVNFPSQKQ 191
>gi|34497781|ref|NP_901996.1| histone deacetylase/AcuC/AphA family protein [Chromobacterium
violaceum ATCC 12472]
gi|34103637|gb|AAQ59998.1| probable histone deacetylase/AcuC/AphA family protein
[Chromobacterium violaceum ATCC 12472]
Length = 302
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 90/189 (47%), Gaps = 9/189 (4%)
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
R VG T+ A AL G +N+ GG HHA +G GFC + DI++ LL +
Sbjct: 88 RRSVGATVAASRSALLEGCGVNLAGGTHHAGRERGSGFCMFNDIAVASMLLLAEARVRRV 147
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCR------IELAPYTEDQHYL 331
+IVDLD HQG+G +E RIF T A+ R I+L TED YL
Sbjct: 148 LIVDLDVHQGDGTAAIAADEPRIF---TFSMHGARNFPFRRVDSDWDIDLPDGTEDAAYL 204
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
+ + L PD++ Y AG D D LG LA+S QG+ RD +V R
Sbjct: 205 DALARALPELFARARPDLVCYLAGADPYHGDRLGRLALSKQGLAERDRMVMEACRRYDAA 264
Query: 392 IVMLTSGGY 400
+ + +GGY
Sbjct: 265 LAVTMAGGY 273
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
T+ A AL G +N+ GG HHA +G GFC + DI++ LL + +IVDLD
Sbjct: 94 TVAASRSALLEGCGVNLAGGTHHAGRERGSGFCMFNDIAVASMLLLAEARVRRVLIVDLD 153
Query: 65 AHQ 67
HQ
Sbjct: 154 VHQ 156
>gi|66047522|ref|YP_237363.1| histone deacetylase superfamily protein [Pseudomonas syringae pv.
syringae B728a]
gi|422671771|ref|ZP_16731136.1| histone deacetylase superfamily protein [Pseudomonas syringae pv.
aceris str. M302273]
gi|63258229|gb|AAY39325.1| Histone deacetylase superfamily [Pseudomonas syringae pv. syringae
B728a]
gi|330969510|gb|EGH69576.1| histone deacetylase superfamily protein [Pseudomonas syringae pv.
aceris str. M302273]
Length = 305
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 141/296 (47%), Gaps = 22/296 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y +Y+ F + P D ++ + +YL+++ + ++ P+
Sbjct: 4 PLIYHEDYSPDFPADHRF-PMDK----------FRLLRDYLIDSGLTSDVQLMRPELCPA 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ L +AH Y+ S S +++ E + +P + + R +R VGG+L A
Sbjct: 53 DILALAHDPSYI-SRYLSGDLS--REDQRRLGLP--WSEALARRTIRA-VGGSLLTAEQA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L+ G + ++ GG HHA GFC + D++++ + L QS + +I D D HQG+G
Sbjct: 107 LKHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQGDGTA 166
Query: 292 KDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ + +T I + K A + + I L D YL ++ L L + P
Sbjct: 167 R-ILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVVDDLLNYLLPLYKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
D+++Y+AG DV +D LG L ++ QG+ RDE V R +P++ + GGY K
Sbjct: 226 DLVLYDAGVDVHKDDALGYLQLTDQGLANRDEAVLRHCLSRDIPVMGVIGGGYSKD 281
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L AL+ G + ++ GG HHA GFC + D++++ + L QS + +I D
Sbjct: 98 GSLLTAEQALKHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|423097458|ref|ZP_17085254.1| histone deacetylase family protein [Pseudomonas fluorescens Q2-87]
gi|397887914|gb|EJL04397.1| histone deacetylase family protein [Pseudomonas fluorescens Q2-87]
Length = 306
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 142/299 (47%), Gaps = 24/299 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F E P D ++ + ++LV++ +++ P
Sbjct: 2 PLPLIYHEDYSPEF-PAEHRFPMDK----------FRLLRDHLVDSGLTRDVDLLRPSLC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAG 228
+ L +AH Y++ + +S E + +P + + R +R VGG+L A
Sbjct: 51 PPDILALAHDRAYIER----YMGGELSREDQRRLGLP--WSEALARRTVRA-VGGSLLAA 103
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
AL G + ++ GG HHA GFC + D++++ + S +S +I D D HQG+
Sbjct: 104 EQALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISRYFLASGRVSRVLIFDCDVHQGD 163
Query: 289 GYEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRS 344
G + +++T + + K A + + I L +D YL+ ++ L L
Sbjct: 164 GTAR-ILHDTPDAVTVSLHCEKNFPARKAQSDWDIPLPMGMDDGAYLKVVDDALNYLLPL 222
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P+V + GGY K
Sbjct: 223 YQPDLVLYDAGVDVHKDDALGYLKLTDEGLAARDESVMRHCLGRDIPVVGVIGGGYSKD 281
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ + S +S +I D
Sbjct: 98 GSLLAAEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISRYFLASGRVSRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|398910038|ref|ZP_10654851.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM49]
gi|398186870|gb|EJM74230.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM49]
Length = 325
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 141/304 (46%), Gaps = 28/304 (9%)
Query: 107 VTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQD-NIIE 165
+ P P++Y +Y+ F P D + F L H+ N +T+D +++
Sbjct: 18 IIMPLPLIYHEDYSPEF-------PADHRFPMDKFRLLRDHLVN-----SGLTRDADLLR 65
Query: 166 PQEVSEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVP-NYFVQKCYLRPMRYHVGG 223
P+ + L +AH Y++ + +S E + +P N + + +R VGG
Sbjct: 66 PELCPADILALAHDPSYIER----YMSGELSREDQRRLGLPWNEALARRTVRA----VGG 117
Query: 224 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 283
+L A AL G + ++ GG HHA GFC + D++++ L +S ++ +I D D
Sbjct: 118 SLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDCD 177
Query: 284 AHQGNGYEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLE 339
HQG+G + N + E ++ E+ I L D YL+ ++ L
Sbjct: 178 VHQGDGTARILHNTPEAVTVSLHCEKNFPARKAES-DWDIPLPNGMGDADYLKVVDDALN 236
Query: 340 RSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGG 399
L + PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P+V + GG
Sbjct: 237 YLLPLYQPDLVLYDAGVDVHKDDALGYLKLTDEGVAARDESVMRHCLGRDIPLVGVIGGG 296
Query: 400 YLKQ 403
Y K
Sbjct: 297 YSKD 300
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ L +S ++ +I D
Sbjct: 117 GSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDC 176
Query: 64 DAHQ 67
D HQ
Sbjct: 177 DVHQ 180
>gi|376316853|emb|CCG00233.1| histone deacetylase superfamily protein [uncultured Dokdonia sp.]
Length = 300
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 132/308 (42%), Gaps = 30/308 (9%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PI P H F +EK ++ L K LV +N EP +V+
Sbjct: 8 PIYKHPLPEGHRFPMEK------------YDLLPKQ----LVYEGTCDANNFFEPTQVAH 51
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E +L HT +Y++SLK + + ++ + V + + GT++ A
Sbjct: 52 EHILRCHTTEYVESLK-ALTIDPRAQRKTGFPLSQELVDRELIITQ-----GTIDGCHYA 105
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G ++NI GG HHA G FC D ++ + L ++ +IVDLD HQGNG
Sbjct: 106 LENGIAMNIAGGTHHAYTDHGEAFCLLNDQAIAARYLQANELAKKILIVDLDVHQGNGTA 165
Query: 292 KDFMNETRIFIMETCITSKA-----KEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
+ F + +F + KA KE I L T D YL ++ L ++
Sbjct: 166 EIFTGDDSVFTFS--MHGKANYPFRKEISDLDIALETDTGDADYLTILKKTLPTLIKEQQ 223
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
PD I Y G D+L +D LG L S +G RD V + ++P+ GGY +
Sbjct: 224 PDFIFYLCGVDILASDKLGKLGCSIEGCKERDRFVLQTCHDLKIPVQCSMGGGY-SPDIK 282
Query: 407 IIADSILN 414
+I D+ N
Sbjct: 283 VIIDAHAN 290
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++ AL G ++NI GG HHA G FC D ++ + L ++ +IVDL
Sbjct: 97 GTIDGCHYALENGIAMNIAGGTHHAYTDHGEAFCLLNDQAIAARYLQANELAKKILIVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|225012063|ref|ZP_03702500.1| histone deacetylase superfamily [Flavobacteria bacterium MS024-2A]
gi|225003618|gb|EEG41591.1| histone deacetylase superfamily [Flavobacteria bacterium MS024-2A]
Length = 305
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 89/190 (46%), Gaps = 3/190 (1%)
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 281
GGT+ A G ++NI GG HHA +G FC D ++ + L +K +I+D
Sbjct: 101 GGTIMGCEKAFETGIAMNIAGGTHHAFSDRGEAFCLLNDQAIAAQYLLDTKKAKKILIID 160
Query: 282 LDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGL 338
LD HQGNG F +F + + KE I L TED+ YL +I+ +
Sbjct: 161 LDVHQGNGTASIFKTNPSVFTLSVHGSKNYPFRKEKSDLDIGLEDGTEDETYLGQIKKVI 220
Query: 339 ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSG 398
PD + Y G DVL D LG L +S +G +RD V + ++R +P+ G
Sbjct: 221 PALFDKIKPDFVFYLCGVDVLSTDKLGRLGMSLEGCKKRDTFVLSQCKKRNIPVQCSMGG 280
Query: 399 GYLKQTARII 408
GY K II
Sbjct: 281 GYSKDIKVII 290
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A G ++NI GG HHA +G FC D ++ + L +K +I+DL
Sbjct: 102 GTIMGCEKAFETGIAMNIAGGTHHAFSDRGEAFCLLNDQAIAAQYLLDTKKAKKILIIDL 161
Query: 64 DAHQ 67
D HQ
Sbjct: 162 DVHQ 165
>gi|163761313|ref|ZP_02168388.1| hypothetical protein HPDFL43_21684 [Hoeflea phototrophica DFL-43]
gi|162281470|gb|EDQ31766.1| hypothetical protein HPDFL43_21684 [Hoeflea phototrophica DFL-43]
Length = 271
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 110/240 (45%), Gaps = 13/240 (5%)
Query: 166 PQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTL 225
P S E L +AH+ Y+ + S A I ++ LR R GT+
Sbjct: 18 PVPASAEWLALAHSRSYVDQVIASRVPAPIEREIGFA-----VDERVSLR-ARLATAGTV 71
Query: 226 EAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAH 285
A LAL G + N GG HHA +G GFC + D+++ +L ++VDLD H
Sbjct: 72 MAARLALSEGIACNTAGGSHHARRDQGAGFCTFNDVAVASLVLLADGEARNILVVDLDVH 131
Query: 286 QGNGYEKDFMNETRIFIMETCITSKAKEAIRCR-----IELAPYTEDQHYLEKIEAGLER 340
QG+G + + + + + +R + + L D+ YLE I+ L +
Sbjct: 132 QGDGTAE--ICGANAAVRTVSVHGEKNYPVRKQTSDIDVALPDGVRDEAYLETIDWLLPQ 189
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
++ F PD++ +NAG D D LG L+++ G+ RD VF R R +PI + GGY
Sbjct: 190 TIDRFDPDLVFFNAGVDPHEADRLGRLSLTDDGLRERDRRVFSFFRARNIPIAAVIGGGY 249
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LAL G + N GG HHA +G GFC + D+++ +L ++VDL
Sbjct: 69 GTVMAARLALSEGIACNTAGGSHHARRDQGAGFCTFNDVAVASLVLLADGEARNILVVDL 128
Query: 64 DAHQ 67
D HQ
Sbjct: 129 DVHQ 132
>gi|108758575|ref|YP_628878.1| histone deacetylase [Myxococcus xanthus DK 1622]
gi|108462455|gb|ABF87640.1| histone deacetylase family protein [Myxococcus xanthus DK 1622]
Length = 586
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 90/271 (33%), Positives = 131/271 (48%), Gaps = 12/271 (4%)
Query: 151 YLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQ 210
YL+EA+ + ++ PQ VS +L H YL+SL +A I P VP
Sbjct: 49 YLLEARALRTQDVHHPQPVSLAELSRVHDAAYLESLGQPETLARIFATDP-ADVP----V 103
Query: 211 KCYLRPMRYHVGGTLEAGFLAL-RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF 269
L +R GGTL A LA+ R+G +N+ GGFHHA +GGGFCA DI++ + L
Sbjct: 104 DALLSNLRRVCGGTLGAARLAVARKGPVVNMAGGFHHAGPARGGGFCAVNDIAIALAALH 163
Query: 270 QSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCRIELAPY-TEDQ 328
A+++DLDAH +G + + R +I + + P T+D+
Sbjct: 164 ADGFDGQAVVLDLDAHPPDGTAECLAGQKRAWIGSLSGSDWGALSPEVDETRVPEDTDDR 223
Query: 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER 388
YL ++ LER R PD+ AG+DVL D G + +S G RRD + R
Sbjct: 224 TYLALLDGLLERMPR---PDVAFVIAGSDVLAGDRFGRVGLSLDGARRRDRALARALRG- 279
Query: 389 RVPIVMLTSGGYLKQTARIIADSILNLADLG 419
+P V L GGY + ++ A ++L LA G
Sbjct: 280 -IPSVWLPGGGYHRDAWKVFAGTVLVLAGQG 309
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 4 GTLEAGFLAL-RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 62
GTL A LA+ R+G +N+ GGFHHA +GGGFCA DI++ + L A+++D
Sbjct: 116 GTLGAARLAVARKGPVVNMAGGFHHAGPARGGGFCAVNDIAIALAALHADGFDGQAVVLD 175
Query: 63 LDAH 66
LDAH
Sbjct: 176 LDAH 179
>gi|156743387|ref|YP_001433516.1| histone deacetylase superfamily protein [Roseiflexus castenholzii
DSM 13941]
gi|156234715|gb|ABU59498.1| histone deacetylase superfamily [Roseiflexus castenholzii DSM
13941]
Length = 297
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 121/258 (46%), Gaps = 20/258 (7%)
Query: 162 NIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEV-CPLVAVP--NYFVQKCYLRPMR 218
++I P+ + LL AHT YL +K AIS+ + P + +++ R
Sbjct: 38 DLILPEAADDRTLLRAHTADYLHRIK----TGAISDREMRQIGFPWSPHLIERS-----R 88
Query: 219 YHVGGTLEAGFLALR-RGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
VG T+ A AL G++ N+ GG HHA G G+C + D + + + +
Sbjct: 89 RSVGATIAACRAALSGDGFAANLAGGTHHAFADHGEGYCVFNDSVIAARAMQAEGRVRRV 148
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
+I+D D HQGNG + IF + KE I L T D YL +
Sbjct: 149 VIIDCDVHQGNGIAAILTGDDTIFSFSIHGSRNYPFRKERSDLDIALEDGTGDTGYLAAL 208
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
E GL +++ D+ +Y AG D +D LG L+++ G++ RD +VF R +P+ +
Sbjct: 209 ETGLRQAVERSRADLAIYLAGADPYEHDRLGRLSLTKAGLLERDRMVFEVCRNAGIPVAI 268
Query: 395 LTSGGYLKQTARIIADSI 412
+GGY AR IAD++
Sbjct: 269 TMAGGY----ARAIADTV 282
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 15/94 (15%)
Query: 16 GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQFS------ 69
G++ N+ GG HHA G G+C + D + + + + +I+D D HQ +
Sbjct: 106 GFAANLAGGTHHAFADHGEGYCVFNDSVIAARAMQAEGRVRRVVIIDCDVHQGNGIAAIL 165
Query: 70 ---DYYFPSAHSIKRKRKVEFLKERK----ALED 96
D F + SI R F KER ALED
Sbjct: 166 TGDDTIF--SFSIHGSRNYPFRKERSDLDIALED 197
>gi|398931340|ref|ZP_10665142.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM48]
gi|398163792|gb|EJM51942.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM48]
Length = 325
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 138/302 (45%), Gaps = 24/302 (7%)
Query: 107 VTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEP 166
+ P P++Y +Y+ F P D + F L H LV++ +++ P
Sbjct: 18 IIMPLPLIYHEDYSPEF-------PADHRFPMDKFRLLRDH----LVDSGLTRDVDLLRP 66
Query: 167 QEVSEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGGTL 225
+ L +AH Y++ + +S E + +P + + R +R VGG+L
Sbjct: 67 DLCPADILALAHDPSYIER----YMSGELSREDQRRLGLP--WSEALARRTVRA-VGGSL 119
Query: 226 EAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAH 285
A AL G + ++ GG HHA GFC + D++++ L +S ++ +I D D H
Sbjct: 120 LAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDCDVH 179
Query: 286 QGNGYEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERS 341
QG+G + N + E ++ E+ I L D YL+ ++ L
Sbjct: 180 QGDGTARILHNTPEAVTVSLHCEKNFPARKAES-DWDIPLPNGMGDTDYLKVVDDALNYL 238
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYL 401
L + PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P+V + GGY
Sbjct: 239 LPLYQPDLVLYDAGVDVHKDDALGYLKLTDEGVAARDESVMRHCLGRDIPVVGVIGGGYS 298
Query: 402 KQ 403
K
Sbjct: 299 KD 300
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ L +S ++ +I D
Sbjct: 117 GSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDC 176
Query: 64 DAHQ 67
D HQ
Sbjct: 177 DVHQ 180
>gi|389681767|ref|ZP_10173111.1| histone deacetylase family protein [Pseudomonas chlororaphis O6]
gi|388554302|gb|EIM17551.1| histone deacetylase family protein [Pseudomonas chlororaphis O6]
Length = 306
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 140/300 (46%), Gaps = 26/300 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F E P D ++ + ++LV++ +++ P+
Sbjct: 2 PLPLIYHDDYSPEF-PAEHRFPMDK----------FRLLRDHLVDSGLTRDADLMRPELC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVP-NYFVQKCYLRPMRYHVGGTLEA 227
+E L +AH Y++ + +S E + +P N + + +R VGG+L A
Sbjct: 51 PKEILALAHDPGYIER----YMAGELSREDQRRLGLPWNEALARRTVRA----VGGSLLA 102
Query: 228 GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQG 287
AL G + ++ GG HHA GFC + D++++ L ++ + +I D D HQG
Sbjct: 103 AEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISHYLLEAGRVGRVLIFDCDVHQG 162
Query: 288 NGYEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLR 343
+G + + T + + K A + I L D YL+ ++ L L
Sbjct: 163 DGTAR-ILEHTPDAVTVSLHCEKNFPARKATSDWDIPLPMGMGDADYLKVVDDALNYLLP 221
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ QG+ RDE V R +P++ + GGY K
Sbjct: 222 LYQPDLVLYDAGVDVHKDDALGYLKLTDQGVAARDEQVMRHCLGRDIPVLGVIGGGYSKD 281
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ L ++ + +I D
Sbjct: 98 GSLLAAEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISHYLLEAGRVGRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|408479141|ref|ZP_11185360.1| putative histone deacetylase family protein [Pseudomonas sp. R81]
Length = 306
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 137/298 (45%), Gaps = 22/298 (7%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F P D + F L H LV++ ++ PQ
Sbjct: 2 PLPLIYHDDYSPEF-------PADHRFPMDKFRLLRDH----LVDSGLTEDSQLLRPQLC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
E L +AH Y++ ++ + + L N + + +R VGG++ A
Sbjct: 51 PPEILALAHDAGYIE--RYMGGELSREDQRRLGLPWNEALARRTVRA----VGGSILAAE 104
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
AL G + ++ GG HHA GFC + D++++ L S ++ +I D D HQG+G
Sbjct: 105 QALDHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDCDVHQGDG 164
Query: 290 YEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSF 345
+ +++T I + K A + + I L D YL+ ++ L L +
Sbjct: 165 TAR-ILHDTPDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLKVVDDALNYLLPLY 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P++ + GGY K
Sbjct: 224 QPDLVLYDAGVDVHKDDALGYLKLTDEGVAARDESVMRHCLGRDIPVMGVIGGGYSKD 281
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ A AL G + ++ GG HHA GFC + D++++ L S ++ +I D
Sbjct: 98 GSILAAEQALDHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|425901732|ref|ZP_18878323.1| histone deacetylase family protein [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397892988|gb|EJL09464.1| histone deacetylase family protein [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 306
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 139/300 (46%), Gaps = 26/300 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F E P D ++ + ++LV++ +++ P+
Sbjct: 2 PLPLIYHEDYSPEF-PAEHRFPMDK----------FRLLRDHLVDSGLTRDADLLRPELC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVP-NYFVQKCYLRPMRYHVGGTLEA 227
E L +AH Y++ + +S E + +P N + + +R VGG+L A
Sbjct: 51 PREILALAHDPGYIER----YMAGELSREDQRRLGLPWNEALARRTVRA----VGGSLLA 102
Query: 228 GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQG 287
AL G + ++ GG HHA GFC + D++++ L ++ + +I D D HQG
Sbjct: 103 AEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISHYLLEAGRVGRVLIFDCDVHQG 162
Query: 288 NGYEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLR 343
+G + + T + + K A + I L D YL+ ++ L L
Sbjct: 163 DGTAR-ILEHTPDAVTVSLHCEKNFPARKATSDWDIPLPMGMGDTDYLKVVDDALNYLLP 221
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ QG+ RDE V R +P++ + GGY K
Sbjct: 222 LYQPDLVLYDAGVDVHKDDALGYLKLTDQGVAARDEQVMRHCLGRDIPVLGVIGGGYSKD 281
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ L ++ + +I D
Sbjct: 98 GSLLAAEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISHYLLEAGRVGRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|399008851|ref|ZP_10711308.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM17]
gi|398114713|gb|EJM04517.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM17]
Length = 306
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 139/300 (46%), Gaps = 26/300 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F E P D ++ + ++LV++ +++ P+
Sbjct: 2 PLPLIYHEDYSPEF-PAEHRFPMDK----------FRLLRDHLVDSGLTRDADLLRPELC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVP-NYFVQKCYLRPMRYHVGGTLEA 227
E L +AH Y++ + +S E + +P N + + +R VGG+L A
Sbjct: 51 PREILALAHDPGYIER----YMAGELSREDQRRLGLPWNEALARRTVRA----VGGSLLA 102
Query: 228 GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQG 287
AL G + ++ GG HHA GFC + D++++ L ++ + +I D D HQG
Sbjct: 103 AEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISHYLLEAGRVGRVLIFDCDVHQG 162
Query: 288 NGYEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLR 343
+G + + T + + K A + I L D YL+ ++ L L
Sbjct: 163 DGTAR-ILEHTPDAVTVSLHCEKNFPARKASSDWDIPLPMGMGDADYLKVVDDALNYLLP 221
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ QG+ RDE V R +P++ + GGY K
Sbjct: 222 LYQPDLVLYDAGVDVHQDDALGYLKLTDQGVAARDEQVMRHCLGRDIPVLGVIGGGYSKD 281
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ L ++ + +I D
Sbjct: 98 GSLLAAEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISHYLLEAGRVGRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|669044|emb|CAA78368.1| Portion of hypothetical protein [Synechococcus sp. PCC 7002]
Length = 300
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 128/310 (41%), Gaps = 50/310 (16%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
+P+VY P+Y + + H F K++ + L +E I + + +PQ
Sbjct: 3 FPVVYHPDY---VTPIPEEHRFPMPKFRLLHGLL--------LEDGVIQPEQVYQPQLPD 51
Query: 171 EEQLLIAHTEKYLKS---------------LKWSFNVAAISEVCPLVAVPNYFVQKCYLR 215
L + H Y+ + L WS V VQ+
Sbjct: 52 RAWLELVHEPDYVTAYCQGTLTPKAQRRIGLPWSAGV----------------VQRTLTA 95
Query: 216 PMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS 275
VGGT+ LAL G + N GG HHA G GFC D+++ + + Q
Sbjct: 96 -----VGGTILTAQLALEHGLACNTAGGTHHAFPGYGSGFCILNDLAIATRTIQQRGLAQ 150
Query: 276 TAMIVDLDAHQGNGYEKDFMNETRIFIMET-CITSKAKEAIRCRIELA--PYTEDQHYLE 332
+IVDLD HQG+G F ++ +F C + + R ++L +D YL+
Sbjct: 151 RILIVDLDVHQGDGTAFIFQDDPTVFTFSMHCEVNFPSQKQRSDLDLGLPEGLDDDGYLQ 210
Query: 333 KIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPI 392
+ LE L PD++ Y+AG D + D LG LA++ G+ RR+ LV P+
Sbjct: 211 ILAHHLEDLLSQVKPDLVFYDAGVDTHVGDRLGKLAMTNTGLYRRERLVLSTCLAAGYPV 270
Query: 393 VMLTSGGYLK 402
+ GGY K
Sbjct: 271 ACVIGGGYAK 280
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G + N GG HHA G GFC D+++ + + Q +IVDL
Sbjct: 98 GTILTAQLALEHGLACNTAGGTHHAFPGYGSGFCILNDLAIATRTIQQRGLAQRILIVDL 157
Query: 64 DAHQFSDYYF-----PSAHSIKRKRKVEFLKERK 92
D HQ F P+ + +V F +++
Sbjct: 158 DVHQGDGTAFIFQDDPTVFTFSMHCEVNFPSQKQ 191
>gi|297623371|ref|YP_003704805.1| histone deacetylase [Truepera radiovictrix DSM 17093]
gi|297164551|gb|ADI14262.1| Histone deacetylase [Truepera radiovictrix DSM 17093]
Length = 309
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 91/189 (48%), Gaps = 3/189 (1%)
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
R+ VGGTL A + A RG+ +N+GGG HHA +G GFC + D+++ + +
Sbjct: 97 RHTVGGTLAALYDARTRGYGVNLGGGTHHAFADRGEGFCVFNDLAVAAYHALERGLAARV 156
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
MI+DLD HQG+ + +F KE C + L D YL ++
Sbjct: 157 MIIDLDVHQGDDTAHLCAFDPHVFTYSVHGAHNYPFHKERSACDVPLEDGVTDAAYLARL 216
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
EA L ++ F P++ +Y G DVL D G A+S G RD V+ R VP+V
Sbjct: 217 EATLPDAVARFRPELALYVGGADVLAGDRFGRAALSLAGAEARDRFVYGLLRAAGVPVVY 276
Query: 395 LTSGGYLKQ 403
GGY +
Sbjct: 277 TMGGGYHRD 285
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL A + A RG+ +N+GGG HHA +G GFC + D+++ + + MI+DL
Sbjct: 102 GTLAALYDARTRGYGVNLGGGTHHAFADRGEGFCVFNDLAVAAYHALERGLAARVMIIDL 161
Query: 64 DAHQFSDYYFPSA-------HSIKRKRKVEFLKERKA----LEDEITS 100
D HQ D A +S+ F KER A LED +T
Sbjct: 162 DVHQGDDTAHLCAFDPHVFTYSVHGAHNYPFHKERSACDVPLEDGVTD 209
>gi|388598754|ref|ZP_10157150.1| hypothetical protein VcamD_02518 [Vibrio campbellii DS40M4]
Length = 307
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 139/301 (46%), Gaps = 17/301 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y+ L + H + K+ H L + + L + Q +P +S
Sbjct: 3 PLIYHPIYSQ--LDLPEGHRYPIMKYHH----LHQAVLEKLANESWGEQVEFFQPTSLSV 56
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+++ H+E+Y+ L V + + + + R + G L A A
Sbjct: 57 DEVKRVHSEEYVDLL-----VTGAMPAAKMRRIGFPWSEALITRTLTSTAGTVLTAE-KA 110
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G +I++ GG+HHA + G GFC + D+++ K + + + MI+D D H G+G
Sbjct: 111 LEHGIAIHLSGGYHHAHKDFGSGFCLFNDLAIAAKHMLDHEHVDKVMIIDSDVHHGDGTA 170
Query: 292 KDFMNETRIFIME-TCITSKAKEAIRCRIELAPY---TEDQHYLEKIEAGLERSLRSFCP 347
+E I + C + +++ P+ T+D+ +L + ++ ++ P
Sbjct: 171 TLCKDEGYIITLSFHCDKNFPARKPDSDLDV-PFRRDTDDETFLMTFKEVVQMAINLHRP 229
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D+++Y+AG D+ +D LG +S +GI RD + ++R +P+ + GGY + A +
Sbjct: 230 DMVIYDAGVDIHTDDELGYFNVSTEGIFERDRFLMQLMKDRGIPVAAVVGGGYRSEHADL 289
Query: 408 I 408
+
Sbjct: 290 V 290
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ AL G +I++ GG+HHA + G GFC + D+++ K + + + MI+D
Sbjct: 102 GTVLTAEKALEHGIAIHLSGGYHHAHKDFGSGFCLFNDLAIAAKHMLDHEHVDKVMIIDS 161
Query: 64 DAHQ 67
D H
Sbjct: 162 DVHH 165
>gi|330811883|ref|YP_004356345.1| histone deacetylase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423699453|ref|ZP_17673943.1| histone deacetylase family protein [Pseudomonas fluorescens
Q8r1-96]
gi|327379991|gb|AEA71341.1| Putative histone deacetylase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|387996896|gb|EIK58226.1| histone deacetylase family protein [Pseudomonas fluorescens
Q8r1-96]
Length = 306
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 141/297 (47%), Gaps = 24/297 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y +Y+ F E P D ++ + ++LV++ +++ P
Sbjct: 4 PLIYHEDYSPDF-PAEHRFPMDK----------FRLLRDHLVDSGLTRDADLLRPSLCPP 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+ L +AH Y++ + +S E + +P + + R +R VGG+L A
Sbjct: 53 DILALAHDRAYIER----YMGGELSREDQRRLGLP--WSEALARRTVRA-VGGSLLAAEQ 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G + ++ GG HHA GFC + D++++ + S +S +I D D HQG+G
Sbjct: 106 ALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISRYFLASGRVSRVLIFDCDVHQGDGT 165
Query: 291 EKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFC 346
+ +++T + + K A + + I L ED YL+ ++ L L +
Sbjct: 166 AR-ILHDTPDAVTVSLHCEKNFPARKAQSDWDIPLPMGMEDAAYLKVVDDALNYLLPLYQ 224
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P+V + GGY K
Sbjct: 225 PDLVLYDAGVDVHKDDALGYLKLTDEGLAARDESVMRHCLGRDIPVVGVIGGGYSKD 281
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ + S +S +I D
Sbjct: 98 GSLLAAEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDLAVISRYFLASGRVSRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|119897892|ref|YP_933105.1| histone deacetylase family protein [Azoarcus sp. BH72]
gi|119670305|emb|CAL94218.1| histone deacetylase family protein [Azoarcus sp. BH72]
Length = 305
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 121/293 (41%), Gaps = 22/293 (7%)
Query: 145 WKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVA 203
+ + LV + ++ EP ++ +L AH Y+ + + I +
Sbjct: 24 YSRLRARLVASGVFGDGDLREPAAATDAELARAHDPAYVARVAQGELAADEIRRI----- 78
Query: 204 VPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISL 263
+ + + R G TL A AL G IN+ GG HHA G GFC + D ++
Sbjct: 79 --GFPWSEAMVERSRRSAGATLAACRSALDEGCGINLAGGTHHAHRDFGSGFCVFNDAAV 136
Query: 264 LVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSKAKE------AIRC 317
+ + +VD D HQG+G +F TC AK
Sbjct: 137 AALAMRAEGRVQRVAVVDCDVHQGDGTAAILAGVPEVF---TCSLHGAKNFPFRKARSDL 193
Query: 318 RIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRR 377
+EL T D+ YL ++ LER F P +++Y AG D D LG LA+S QG+ R
Sbjct: 194 DVELPDDTGDEPYLAALDNALERVFSEFRPQLLIYLAGADPYAGDRLGRLALSKQGLAER 253
Query: 378 DELVFMKARERRVPIVMLTSGGY---LKQTARIIADSILNLADLGLISRPYNI 427
D V + +PI + +GGY + T I ++L A GL RP +
Sbjct: 254 DRRVLARCHASGLPIAIAMAGGYASEIDDTVDIHYRTVLTAA--GLFHRPAGV 304
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
TL A AL G IN+ GG HHA G GFC + D ++ + + +VD D
Sbjct: 97 TLAACRSALDEGCGINLAGGTHHAHRDFGSGFCVFNDAAVAALAMRAEGRVQRVAVVDCD 156
Query: 65 AHQ 67
HQ
Sbjct: 157 VHQ 159
>gi|1075598|pir||B47050 glnA 3'-region hypothetical protein - Synechococcus sp
gi|580726|emb|CAA78367.1| Portion of hypothetical protein [Synechococcus sp. PCC 7002]
Length = 310
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 128/310 (41%), Gaps = 50/310 (16%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
+P+VY P+Y + + H F K++ + L +E I + + +PQ
Sbjct: 13 FPVVYHPDY---VTPIPEEHRFPMPKFRLLHGLL--------LEDGVIQPEQVYQPQLPD 61
Query: 171 EEQLLIAHTEKYLKS---------------LKWSFNVAAISEVCPLVAVPNYFVQKCYLR 215
L + H Y+ + L WS V VQ+
Sbjct: 62 RAWLELVHEPDYVTAYCQGTLTPKAQRRIGLPWSAGV----------------VQRTLTA 105
Query: 216 PMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS 275
VGGT+ LAL G + N GG HHA G GFC D+++ + + Q
Sbjct: 106 -----VGGTILTAQLALEHGLACNTAGGTHHAFPGYGSGFCILNDLAIATRTIQQRGLAQ 160
Query: 276 TAMIVDLDAHQGNGYEKDFMNETRIFIMET-CITSKAKEAIRCRIELA--PYTEDQHYLE 332
+IVDLD HQG+G F ++ +F C + + R ++L +D YL+
Sbjct: 161 RILIVDLDVHQGDGTAFIFQDDPTVFTFSMHCEVNFPSQKQRSDLDLGLPEGLDDDGYLQ 220
Query: 333 KIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPI 392
+ LE L PD++ Y+AG D + D LG LA++ G+ RR+ LV P+
Sbjct: 221 ILAHHLEDLLSQVKPDLVFYDAGVDTHVGDRLGKLAMTNTGLYRRERLVLSTCLAAGYPV 280
Query: 393 VMLTSGGYLK 402
+ GGY K
Sbjct: 281 ACVIGGGYAK 290
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G + N GG HHA G GFC D+++ + + Q +IVDL
Sbjct: 108 GTILTAQLALEHGLACNTAGGTHHAFPGYGSGFCILNDLAIATRTIQQRGLAQRILIVDL 167
Query: 64 DAHQFSDYYF-----PSAHSIKRKRKVEFLKERK 92
D HQ F P+ + +V F +++
Sbjct: 168 DVHQGDGTAFIFQDDPTVFTFSMHCEVNFPSQKQ 201
>gi|346643249|ref|YP_262471.2| histone deacetylase [Pseudomonas protegens Pf-5]
gi|341580402|gb|AAY94613.2| histone deacetylase family protein [Pseudomonas protegens Pf-5]
Length = 306
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 138/299 (46%), Gaps = 24/299 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F E P D ++ + ++LV++ +++ P+
Sbjct: 2 PLPLIYHDDYSPEF-PAEHRFPMDK----------FRLLRDHLVDSGLTRDADLLRPELC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAG 228
E L +AH Y++ + +S E + +P + + R +R VGG+L A
Sbjct: 51 PAEILALAHDPAYIER----YMSGELSREDQRRLGLP--WSEALARRTVRA-VGGSLLAA 103
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
AL G + ++ GG HHA GFC + D++++ L +S + +I D D HQG+
Sbjct: 104 EQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLESGRVGRVLIFDCDVHQGD 163
Query: 289 GYEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRS 344
G + + T + + K A + + I L D YL ++ L L
Sbjct: 164 GTAR-ILQHTADAVTVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVVDDTLNYLLPL 222
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ G+ RDE V R +P+V + GGY K
Sbjct: 223 YQPDLVLYDAGVDVHQDDALGYLKLTDAGVAERDERVMRHCLGRDIPVVGVIGGGYSKD 281
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ L +S + +I D
Sbjct: 98 GSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLESGRVGRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|422629205|ref|ZP_16694410.1| histone deacetylase superfamily protein [Pseudomonas syringae pv.
pisi str. 1704B]
gi|330938165|gb|EGH41867.1| histone deacetylase superfamily protein [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 305
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 141/296 (47%), Gaps = 22/296 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y +Y+ F + P D ++ + +YL+++ + ++ P+
Sbjct: 4 PLIYHEDYSPDFPADHRF-PMDK----------FRLLRDYLIDSGLTSDVQLMRPELCPA 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ L +AH Y+ S S +++ E + +P + + R +R VGG+L A
Sbjct: 53 DILALAHDPSYI-SRYLSGDLS--REDQRRLGLP--WSEALARRTIRA-VGGSLLTAEQA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L+ G + ++ GG HHA GFC + D++++ + L QS + +I D D HQG+G
Sbjct: 107 LKHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQGDGTA 166
Query: 292 KDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ + +T I + K A + + I L D YL ++ L L + P
Sbjct: 167 R-ILADTEDAITVSLHCEKNFPARKAQSDWDIPLPIGMGDVDYLNVVDDLLNYLLPFYKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
D+++Y+AG DV +D LG L ++ QG+ RDE V R +P++ + GGY K
Sbjct: 226 DLVLYDAGVDVHKDDALGYLQLTDQGLANRDEAVLRHCLSRDIPVMGVIGGGYSKD 281
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L AL+ G + ++ GG HHA GFC + D++++ + L QS + +I D
Sbjct: 98 GSLLTAEQALKHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|427706042|ref|YP_007048419.1| histone deacetylase [Nostoc sp. PCC 7107]
gi|427358547|gb|AFY41269.1| Histone deacetylase [Nostoc sp. PCC 7107]
Length = 305
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 134/301 (44%), Gaps = 22/301 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PI+Y P Y L + H F K F+ L++ + N V + PQ++ E
Sbjct: 4 PIIYHPNY---VAPLPEGHRFPMSK----FSKLYELLLNDGVAQAEQFHTPQVPPQDLIE 56
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+ HT Y+++ K + + A + L P + C VGGT+ +
Sbjct: 57 ----LVHTPDYVRAYCKGTLDAKAQRRIG-LPWSPVLVNRTCVA------VGGTILTAQM 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL +G + N GG HHA + G GFC + D+++ ++L + + +IVDLD HQG+G
Sbjct: 106 ALSQGLACNTAGGTHHAFPSYGSGFCIFNDLAIASRVLQKLGLVQKILIVDLDVHQGDGT 165
Query: 291 EKDFMNETRIFIMET-CITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
F ++ +F C + K+ + L +D YL+ + L L P
Sbjct: 166 AFIFADDASVFTFSMHCEVNFPGTKQHSDLDVPLPVGMDDDAYLQTLAKYLPDLLSHVQP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D+I Y+AG D + D LG LA++ G+ RR+ V P+ + GGY +
Sbjct: 226 DLIFYDAGVDPHICDRLGKLALTDTGLFRREMQVLTTCVSAGYPVACVIGGGYADDMKSL 285
Query: 408 I 408
+
Sbjct: 286 V 286
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ +AL +G + N GG HHA + G GFC + D+++ ++L + + +IVDL
Sbjct: 98 GTILTAQMALSQGLACNTAGGTHHAFPSYGSGFCIFNDLAIASRVLQKLGLVQKILIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|261253511|ref|ZP_05946084.1| histone deacetylase/AcuC/AphA family protein [Vibrio orientalis CIP
102891 = ATCC 33934]
gi|417956016|ref|ZP_12599014.1| histone deacetylase/AcuC/AphA family protein [Vibrio orientalis CIP
102891 = ATCC 33934]
gi|260936902|gb|EEX92891.1| histone deacetylase/AcuC/AphA family protein [Vibrio orientalis CIP
102891 = ATCC 33934]
gi|342811536|gb|EGU46573.1| histone deacetylase/AcuC/AphA family protein [Vibrio orientalis CIP
102891 = ATCC 33934]
Length = 307
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 96/190 (50%), Gaps = 3/190 (1%)
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 281
GGT E ++ G +I++ GG+HHA G GFC D+ L K I +IVD
Sbjct: 102 GGTCETVNQSVEHGIAIHLSGGYHHAHHDFGSGFCLVNDLVLAAKRALTIDDIDKVLIVD 161
Query: 282 LDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGL 338
D H G+G ++ I + C + K + LA + D +LE + +
Sbjct: 162 SDVHHGDGTATLCADDASIVTLSFHCDKNFPARKPQSDLDVPLARESGDDEFLETFTSVV 221
Query: 339 ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSG 398
E ++ PD+I+Y+AG D+ +D LG L++S + I +RDE +F A+ +++PI + G
Sbjct: 222 EMAVNLHQPDLILYDAGVDIHKDDELGYLSVSSEAIYKRDEFMFELAKRKQLPIACVVGG 281
Query: 399 GYLKQTARII 408
GY Q +I
Sbjct: 282 GYRSQHEELI 291
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT E ++ G +I++ GG+HHA G GFC D+ L K I +IVD
Sbjct: 103 GTCETVNQSVEHGIAIHLSGGYHHAHHDFGSGFCLVNDLVLAAKRALTIDDIDKVLIVDS 162
Query: 64 DAHQ 67
D H
Sbjct: 163 DVHH 166
>gi|398954423|ref|ZP_10675959.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM33]
gi|398152442|gb|EJM40961.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM33]
Length = 308
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 139/302 (46%), Gaps = 24/302 (7%)
Query: 107 VTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEP 166
+T P P++Y +Y+ F P D + F L H LV++ +++ P
Sbjct: 1 MTMPLPLIYHEDYSPEF-------PADHRFPMDKFRLLRDH----LVDSGLTRDVDLLRP 49
Query: 167 QEVSEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGGTL 225
+ L +AH Y++ + +S E + +P + + R +R VGG+L
Sbjct: 50 DLCPADILALAHDPSYIER----YMSGELSREDQRRLGLP--WSEALARRTVRA-VGGSL 102
Query: 226 EAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAH 285
A A+ G + ++ GG HHA GFC + D++++ L +S ++ +I D D H
Sbjct: 103 LAAEQAMEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDCDVH 162
Query: 286 QGNGYEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERS 341
QG+G + + T + + K A + I L D YL+ ++ L
Sbjct: 163 QGDGTAR-ILQHTPEAVTVSLHCEKNFPARKAESDWDIPLPNGMGDADYLKVVDDALNYL 221
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYL 401
L + PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P+V + GGY
Sbjct: 222 LPLYQPDLVLYDAGVDVHKDDALGYLKLTDEGVAARDESVMRHCLGRDIPVVGVIGGGYS 281
Query: 402 KQ 403
K
Sbjct: 282 KD 283
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A A+ G + ++ GG HHA GFC + D++++ L +S ++ +I D
Sbjct: 100 GSLLAAEQAMEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDC 159
Query: 64 DAHQ 67
D HQ
Sbjct: 160 DVHQ 163
>gi|359780001|ref|ZP_09283228.1| histone deacetylase superfamily protein [Pseudomonas
psychrotolerans L19]
gi|359372617|gb|EHK73181.1| histone deacetylase superfamily protein [Pseudomonas
psychrotolerans L19]
Length = 308
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 129/297 (43%), Gaps = 30/297 (10%)
Query: 112 PIVYRPEYNV-----HFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEP 166
P+VY +Y+ H F +EK F L +H L + + DN P
Sbjct: 6 PLVYHEDYSPPFPAGHRFPMEK------------FRLLHEH----LSASGILGADNWQRP 49
Query: 167 QEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLE 226
+ +E L +AH Y+++ K A PL + +R VGG+L
Sbjct: 50 ELCPDELLALAHAPDYIQAFK------AGELPPPLQRQLGLPWSEALVRRTIRAVGGSLL 103
Query: 227 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 286
LALR G + ++ GG HHA GFC + D+++L L +S +I+D D HQ
Sbjct: 104 TLELALRHGLACHLAGGTHHAHHDYPAGFCIFNDLAILALSLLESGRAGRVLILDCDVHQ 163
Query: 287 GNGYEKDFMN-ETRIFIMETCITSKAKEAIRC--RIELAPYTEDQHYLEKIEAGLERSLR 343
G+G + + + C T+ + I L +D YL ++ L L
Sbjct: 164 GDGTARILAEVPDAVTVSLHCATNYPARKAQSDWDIPLPRGLDDAGYLRVLDDALGYLLP 223
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
PD+++Y+AG DV +D LG L ++ G+ RD V + +P+V + GGY
Sbjct: 224 LHQPDVVLYDAGVDVHRDDALGYLELTDAGLAARDSFVLRRCLAADIPVVGVIGGGY 280
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L LALR G + ++ GG HHA GFC + D+++L L +S +I+D
Sbjct: 100 GSLLTLELALRHGLACHLAGGTHHAHHDYPAGFCIFNDLAILALSLLESGRAGRVLILDC 159
Query: 64 DAHQ 67
D HQ
Sbjct: 160 DVHQ 163
>gi|300310969|ref|YP_003775061.1| deacetylase [Herbaspirillum seropedicae SmR1]
gi|300073754|gb|ADJ63153.1| deacetylase protein [Herbaspirillum seropedicae SmR1]
Length = 331
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 3/195 (1%)
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
R G T+ A A G ++N+ GG HHA G GFC + D ++ +L+ + +
Sbjct: 104 RRSSGATIAACRAAFSEGVAVNLAGGTHHAYGDHGAGFCVFNDAAIAARLMQAERRAARV 163
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
IVDLD HQGNG + +F + + KE + L D+ YL +
Sbjct: 164 AIVDLDVHQGNGTAAILARDDSVFTLSLHGQNNYPFEKEQSDLDVALPDGVGDEDYLCAL 223
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
+ L + F P +++Y AG D D LG + +S G+ RD+ VF ARE +P+ +
Sbjct: 224 QQALATLQQRFAPQLLIYLAGADPHEGDRLGKMKLSLAGLAARDQAVFSYAREHEIPVAV 283
Query: 395 LTSGGYLKQTARIIA 409
+GGY ++ + +A
Sbjct: 284 TMAGGYGREIEQTVA 298
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
T+ A A G ++N+ GG HHA G GFC + D ++ +L+ + + IVDLD
Sbjct: 110 TIAACRAAFSEGVAVNLAGGTHHAYGDHGAGFCVFNDAAIAARLMQAERRAARVAIVDLD 169
Query: 65 AHQ 67
HQ
Sbjct: 170 VHQ 172
>gi|386856560|ref|YP_006260737.1| Histone deacetylase superfamily [Deinococcus gobiensis I-0]
gi|380000089|gb|AFD25279.1| Histone deacetylase superfamily [Deinococcus gobiensis I-0]
Length = 309
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 93/198 (46%), Gaps = 6/198 (3%)
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
R GG+L A A R GW N+ GG HHA + GFC D +LL ++ +
Sbjct: 98 RRAAGGSLAALHDARRVGWGANLAGGTHHAFADRAEGFCLLNDAALLTRIALEEGVARRV 157
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSKA------KEAIRCRIELAPYTEDQHYL 331
++DLD HQGNG E T KE + L +D Y+
Sbjct: 158 AVLDLDVHQGNGTAALLAPEMAAGTAFTLSVHGERNYPFRKERSSLDLGLGDGIDDTEYM 217
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
+ A +L +F PD+++Y AG DVL D G A+S +G+ R+ V + AR R VP
Sbjct: 218 RVLRAEALPALDAFRPDLLLYLAGADVLAGDRFGRFALSLEGVYERNREVLVWARARGVP 277
Query: 392 IVMLTSGGYLKQTARIIA 409
+V + +GGY + A +A
Sbjct: 278 VVTMMAGGYNRDHALTVA 295
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A A R GW N+ GG HHA + GFC D +LL ++ + ++DL
Sbjct: 103 GSLAALHDARRVGWGANLAGGTHHAFADRAEGFCLLNDAALLTRIALEEGVARRVAVLDL 162
Query: 64 DAHQFSDYYFPSAH----------SIKRKRKVEFLKERKALE 95
D HQ + A S+ +R F KER +L+
Sbjct: 163 DVHQGNGTAALLAPEMAAGTAFTLSVHGERNYPFRKERSSLD 204
>gi|302188367|ref|ZP_07265040.1| histone deacetylase superfamily protein [Pseudomonas syringae pv.
syringae 642]
Length = 305
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 137/296 (46%), Gaps = 22/296 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y +Y+ F + P D ++ + +YL+++ + ++ P+
Sbjct: 4 PLIYHEDYSPEFPADHRF-PMDK----------FRLLRDYLIDSGLTSDVQLMRPELCPA 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ L +AH Y++ + E + +P + + R +R VGG+L A
Sbjct: 53 DILALAHDPSYIRRY---LDGDLSREDQRRLGLP--WSEALARRTIRA-VGGSLLTAEQA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L+ G + ++ GG HHA GFC + D++++ + L S + +I D D HQG+G
Sbjct: 107 LKHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLHSGRVDKVLIFDCDVHQGDGTA 166
Query: 292 KDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ + +T I + K A + + I L D YL ++ L L + P
Sbjct: 167 R-ILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVVDDLLNYLLPLYKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
D+++Y+AG DV +D LG L ++ QG+ RDE V R +P++ + GGY K
Sbjct: 226 DLVLYDAGVDVHKDDALGYLQLTDQGLANRDEAVLRHCLSRDIPVMGVIGGGYSKD 281
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L AL+ G + ++ GG HHA GFC + D++++ + L S + +I D
Sbjct: 98 GSLLTAEQALKHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLHSGRVDKVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|398986788|ref|ZP_10691706.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM24]
gi|399011733|ref|ZP_10714063.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM16]
gi|398117317|gb|EJM07069.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM16]
gi|398151664|gb|EJM40206.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM24]
Length = 306
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 139/300 (46%), Gaps = 26/300 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F P D + F L H LV++ +++ P+
Sbjct: 2 PLPLIYHEDYSPEF-------PADHRFPMDKFRLLRDH----LVDSGLTRDADLLRPEIC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVP-NYFVQKCYLRPMRYHVGGTLEA 227
+ L +AH Y++ + +S E + +P N + + +R VGG++ A
Sbjct: 51 PNDILALAHDRAYIER----YMSGELSREDQRRLGLPWNEALARRTVRA----VGGSILA 102
Query: 228 GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQG 287
AL G + ++ GG HHA GFC + D++++ L QS ++ +I D D HQG
Sbjct: 103 AEKALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAIISHYLLQSGRVNRVLIFDCDVHQG 162
Query: 288 NGYEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLR 343
+G + +++T I + K A + I L D YL+ ++ L L
Sbjct: 163 DGTAR-ILHDTPEAITVSLHCEKNFPARKAESDWDIPLPKGMGDGDYLKVVDDTLSYLLP 221
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ G+ RDE V R +P++ + GGY K
Sbjct: 222 LYQPDLVLYDAGVDVHKDDALGYLQLTDAGVAARDESVMRHCLGRDIPVMGVIGGGYSKD 281
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ A AL G + ++ GG HHA GFC + D++++ L QS ++ +I D
Sbjct: 98 GSILAAEKALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAIISHYLLQSGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|424073895|ref|ZP_17811308.1| histone deacetylase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|407995284|gb|EKG35818.1| histone deacetylase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
Length = 305
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 138/295 (46%), Gaps = 20/295 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y +Y+ F + P D ++ + +YL+++ + ++ P+
Sbjct: 4 PLIYHEDYSPDFPADHRF-PMDK----------FRLLRDYLIDSGLTSDVQLMRPELCPA 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ L +AH Y+ S S +++ E + +P + + R +R VGG+L A
Sbjct: 53 DILALAHDPSYI-SRYLSGDLS--REDQRRLGLP--WSEALARRTIRA-VGGSLLTAEQA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G + ++ GG HHA GFC + D++++ + L QS + +I D D HQG+G
Sbjct: 107 LTHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQGDGTA 166
Query: 292 KDFM-NETRIFIMETCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
+ NE I + C + K I L D YL ++ L L + PD
Sbjct: 167 RILADNEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVVDDLLNYLLPFYKPD 226
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+++Y+AG DV +D LG L ++ QG+ RDE V R +P++ + GGY K
Sbjct: 227 LVLYDAGVDVHKDDALGYLQLTDQGLANRDEAVLRHCLGRDIPVMGVIGGGYSKD 281
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L AL G + ++ GG HHA GFC + D++++ + L QS + +I D
Sbjct: 98 GSLLTAEQALTHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|260779262|ref|ZP_05888154.1| histone deacetylase/AcuC/AphA family protein [Vibrio
coralliilyticus ATCC BAA-450]
gi|260605426|gb|EEX31721.1| histone deacetylase/AcuC/AphA family protein [Vibrio
coralliilyticus ATCC BAA-450]
Length = 308
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 135/309 (43%), Gaps = 32/309 (10%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYL---------WKHIFNYLVEAKFITQDN 162
P++Y Y+ L + H + K++ +FN + W+ F+Y
Sbjct: 3 PLIYHSIYSE--LPLPQGHRYPIHKYRLLFNEIEKVRFRDEQWQAFFHY----------- 49
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
EPQ ++ E+++ H E+Y+ L F+ + + P +C + G
Sbjct: 50 -CEPQALTSEEVMKTHCEQYVSEL---FSGGLPAARMRRIGFP---WSECLIERTLTSAG 102
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
GT A+ G +I++ GG+HHA G GFC D+ L K + I +IVD
Sbjct: 103 GTCLTAEKAIEHGVAIHLSGGYHHAHYDFGSGFCLLNDLVLAAKRALTHEGIEKVLIVDS 162
Query: 283 DAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLE 339
D H G+G ++ I + C + K + L T D+ +L + +E
Sbjct: 163 DVHHGDGTATLCADQDDIVTLSFHCDKNFPARKPDSDMDVALPRETSDEEFLSSFASVVE 222
Query: 340 RSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGG 399
++ PD+I+Y+AG D+ +D LG +S Q I +RD +F A+ +PI + GG
Sbjct: 223 MAINLHQPDLILYDAGVDIHQDDELGYFNVSTQAIYQRDVAMFELAKANVLPIGCVVGGG 282
Query: 400 YLKQTARII 408
Y + ++
Sbjct: 283 YRTDHSELV 291
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A+ G +I++ GG+HHA G GFC D+ L K + I +IVD
Sbjct: 103 GTCLTAEKAIEHGVAIHLSGGYHHAHYDFGSGFCLLNDLVLAAKRALTHEGIEKVLIVDS 162
Query: 64 DAHQ 67
D H
Sbjct: 163 DVHH 166
>gi|333907538|ref|YP_004481124.1| histone deacetylase superfamily protein [Marinomonas posidonica
IVIA-Po-181]
gi|333477544|gb|AEF54205.1| histone deacetylase superfamily [Marinomonas posidonica
IVIA-Po-181]
Length = 317
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 135/299 (45%), Gaps = 20/299 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+V+ P Y++ F P + H F L + L E +T +N +P+ +S
Sbjct: 7 PLVFHPHYSIPF-------PAGHRFPMHKFRLL----ADTLREQGILTSENEYQPEPLSL 55
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
L+ AH ++Y+ + A E + + V+ R +R V GT+ LA
Sbjct: 56 AVLMAAHDKQYVHRFIRG-ELTAKEEKDIGLPWSEWLVE----RTLRA-VSGTILTSQLA 109
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L+ G + ++ GG HHA G GFC + D+++ L +K +I+D D HQG+G
Sbjct: 110 LQHGLACHLAGGTHHAHPAHGAGFCIFNDLAVAALNLVNTKQAKKVLILDCDVHQGDGTI 169
Query: 292 KDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
F + I + C + K+ I + D+ YLE ++ L L D
Sbjct: 170 AFFPDHPNIVPVSWHCEENYPNVKQTAGINIAIPKGATDETYLEILKDTLPTLLAEHRAD 229
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
I Y+AG DV D LG + +S QG++ RD V ++ +P + GGY ++ ++
Sbjct: 230 FIFYDAGVDVHQEDRLGYVKLSDQGVLARDTYVIKTCLDQGIPTACVIGGGYDREEDKV 288
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL+ G + ++ GG HHA G GFC + D+++ L +K +I+D
Sbjct: 101 GTILTSQLALQHGLACHLAGGTHHAHPAHGAGFCIFNDLAVAALNLVNTKQAKKVLILDC 160
Query: 64 DAHQ 67
D HQ
Sbjct: 161 DVHQ 164
>gi|299066616|emb|CBJ37806.1| Histone deacetylase [Ralstonia solanacearum CMR15]
Length = 327
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 124/290 (42%), Gaps = 24/290 (8%)
Query: 119 YNVHF-FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIA 177
Y HF L H F +K+ + + + ++ E ++ LL+A
Sbjct: 11 YTDHFVLPLPPGHRFPMRKYSLLRERVMAEVPGLVMH----------EAPRAEDDALLLA 60
Query: 178 HTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWS 237
H Y+ ++ A P V++ R G T+ A A+ G +
Sbjct: 61 HAPDYISAVGAGRLEPARQREIGFPWSPE-MVERS-----RRSAGATMAACEAAMADGIA 114
Query: 238 INIGGGFHHASETKGGGFCAYADISL----LVKLLFQSKSISTAMIVDLDAHQGNGYEKD 293
+N+ GG HHA KGGGFC + D ++ + + L ++ IVDLD HQGNG
Sbjct: 115 VNLAGGTHHAYADKGGGFCVFNDAAIASRWMQRRLGRTPEHFPVAIVDLDVHQGNGTASI 174
Query: 294 FMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
+++ +F + KEA + L D YLE + L+ F P +I
Sbjct: 175 LRDDSSVFTLSVHGEKNYPFRKEASDLDVGLPDGCGDAAYLEALAGALDTLAARFAPRLI 234
Query: 351 VYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
+Y AG D D LG L ++ G+ RRD VF A RR+PI + +GGY
Sbjct: 235 IYLAGADPHEGDRLGRLRLTLDGLARRDRQVFDFAFLRRIPIAVTMAGGY 284
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISL----LVKLLFQSKSISTAMI 60
T+ A A+ G ++N+ GG HHA KGGGFC + D ++ + + L ++ I
Sbjct: 101 TMAACEAAMADGIAVNLAGGTHHAYADKGGGFCVFNDAAIASRWMQRRLGRTPEHFPVAI 160
Query: 61 VDLDAHQ 67
VDLD HQ
Sbjct: 161 VDLDVHQ 167
>gi|163847420|ref|YP_001635464.1| histone deacetylase superfamily protein [Chloroflexus aurantiacus
J-10-fl]
gi|222525269|ref|YP_002569740.1| histone deacetylase superfamily protein [Chloroflexus sp. Y-400-fl]
gi|163668709|gb|ABY35075.1| histone deacetylase superfamily [Chloroflexus aurantiacus J-10-fl]
gi|222449148|gb|ACM53414.1| histone deacetylase superfamily [Chloroflexus sp. Y-400-fl]
Length = 298
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 115/260 (44%), Gaps = 15/260 (5%)
Query: 157 FITQDNIIEPQEVSEEQLLIAHTEKYL-KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLR 215
+T + + P+ S +L AH Y+ + + A I + + +
Sbjct: 36 IVTPERLHVPEPASITELCRAHDANYVERVINGHLTSAEIRRI-------GFPWSPQMVE 88
Query: 216 PMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS 275
R G T+ A +AL G +N+ GG HHA G G+C + D ++ + + +
Sbjct: 89 RSRRSAGATIAACRVALSEGVGVNLAGGTHHAFADAGAGYCVFNDAAVAARAMQSEGRVQ 148
Query: 276 TAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLE 332
I+D D HQG+G F + +F K+ I L T D YL+
Sbjct: 149 RIAIIDCDVHQGDGTAAIFTGDPTVFTFSIHGAHNFPFRKQQSDLDIALPDATGDTAYLD 208
Query: 333 KIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPI 392
+E G+ + PD+++Y AG D +D LG L+++ G+ RD LVF R VP+
Sbjct: 209 ALEWGVRQVFAIARPDLVIYLAGADPYYDDRLGRLSLTKAGLAERDRLVFSYCRAAGVPV 268
Query: 393 VMLTSGGYLKQTARIIADSI 412
+ +GGY +Q I+D++
Sbjct: 269 AVTMAGGYARQ----ISDTV 284
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
T+ A +AL G +N+ GG HHA G G+C + D ++ + + + I+D D
Sbjct: 97 TIAACRVALSEGVGVNLAGGTHHAFADAGAGYCVFNDAAVAARAMQSEGRVQRIAIIDCD 156
Query: 65 AHQ 67
HQ
Sbjct: 157 VHQ 159
>gi|442317607|ref|YP_007357628.1| histone deacetylase family protein [Myxococcus stipitatus DSM
14675]
gi|441485249|gb|AGC41944.1| histone deacetylase family protein [Myxococcus stipitatus DSM
14675]
Length = 582
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 127/272 (46%), Gaps = 14/272 (5%)
Query: 151 YLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQ 210
YL+E + ++ P+ VS +L H YL+SL +A I V P VP
Sbjct: 51 YLLEKHVVRPADVYRPRPVSYAELSRVHDAAYLESLGRPETLARIYAVDP-SEVP----V 105
Query: 211 KCYLRPMRYHVGGTLEAGFLAL-RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF 269
L +R GGTL A LA RRG +N+ GGFHHA+ +GGGFCA DI++ + L
Sbjct: 106 DTLLSNVRLVCGGTLGAARLAFGRRGPVVNMAGGFHHAAPGRGGGFCAVNDIAVALASLQ 165
Query: 270 QSKSISTAMIVDLDAHQGNGYEKDFMNETRIFI--METCITSKAKEAIRCRIELAPYTED 327
+++DLDAH +G + +++I + E + + D
Sbjct: 166 SDGYEGQTVVLDLDAHPPDGTAECLAGNPKVWIGSLSGSDWGSLPEGV-DETRVPDGISD 224
Query: 328 QHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE 387
YL ++ L R ++ D+ AG DVL D G + +S +G RRD+ +
Sbjct: 225 DDYLTLLDGLLSRMPKA---DLAFVIAGGDVLAGDRFGRVGLSVEGARRRDQRIADALHG 281
Query: 388 RRVPIVMLTSGGYLKQTARIIADSILNLADLG 419
VP V L GGY + ++ A ++L L+ +G
Sbjct: 282 --VPSVWLPGGGYHADSWKLFAGTVLVLSGMG 311
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 4 GTLEAGFLAL-RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 62
GTL A LA RRG +N+ GGFHHA+ +GGGFCA DI++ + L +++D
Sbjct: 118 GTLGAARLAFGRRGPVVNMAGGFHHAAPGRGGGFCAVNDIAVALASLQSDGYEGQTVVLD 177
Query: 63 LDAH 66
LDAH
Sbjct: 178 LDAH 181
>gi|115379349|ref|ZP_01466456.1| deacetylase [Stigmatella aurantiaca DW4/3-1]
gi|310825011|ref|YP_003957369.1| histone deacetylase family protein [Stigmatella aurantiaca DW4/3-1]
gi|115363631|gb|EAU62759.1| deacetylase [Stigmatella aurantiaca DW4/3-1]
gi|309398083|gb|ADO75542.1| Histone deacetylase family protein [Stigmatella aurantiaca DW4/3-1]
Length = 487
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 138/309 (44%), Gaps = 19/309 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PI Y Y + F LE + ++ YL VE I ++I P+ VS
Sbjct: 20 PIFYDEPYRLPFGCLEAQQGLEPRQVDFTTGYL--------VERGIIQAEDIHRPRPVSY 71
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
QL H YL++L+ +A+I V P VP V L +R GGTLEA A
Sbjct: 72 AQLARVHDAAYLEALEEPETLASIFAVDP-SEVPVDTV----LDTVRRICGGTLEAARWA 126
Query: 232 LR-RGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
L + ++N+ GGFHHA+ GGGFC DI++ + L ++DLDAH +G
Sbjct: 127 LSTQRPAVNMAGGFHHAAPDHGGGFCVLNDIAVAIATLRHEGFDGPVGVLDLDAHPADGT 186
Query: 291 EKDFMNETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
+ ++++ + + L D YL +EA LER R +I
Sbjct: 187 AACLEGDAQVWVGSLSGSDWGLVPGADEVLLDRGCGDAEYLAALEALLERMPRVALAFVI 246
Query: 351 VYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIAD 410
AG DVL D GLL +S +G RRD V RVP V + GGY + ++ A
Sbjct: 247 ---AGGDVLRGDRFGLLGLSLKGARRRDAAVARAL--HRVPSVWVPGGGYHAEAWKVFAG 301
Query: 411 SILNLADLG 419
S+L L G
Sbjct: 302 SVLVLNGRG 310
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 4 GTLEAGFLALR-RGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 62
GTLEA AL + ++N+ GGFHHA+ GGGFC DI++ + L ++D
Sbjct: 118 GTLEAARWALSTQRPAVNMAGGFHHAAPDHGGGFCVLNDIAVAIATLRHEGFDGPVGVLD 177
Query: 63 LDAH 66
LDAH
Sbjct: 178 LDAH 181
>gi|89073475|ref|ZP_01159998.1| histone deacetylase/AcuC/AphA family protein [Photobacterium sp.
SKA34]
gi|89050739|gb|EAR56220.1| histone deacetylase/AcuC/AphA family protein [Photobacterium sp.
SKA34]
Length = 302
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 90/185 (48%), Gaps = 7/185 (3%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
GGT LAL G +I++ GG+HHA G GFC + D+++ K I MI+
Sbjct: 96 TGGTQLTVDLALEHGIAIHLSGGYHHAHHDFGSGFCLFNDLAIAAKHALSYSHIDKVMII 155
Query: 281 DLDAHQGNGYEKDFMNETRIFIMET-CITS----KAKEAIRCRIELAPYTEDQHYLEKIE 335
D D H G+G N+ I C + K I +E T+D YL ++
Sbjct: 156 DCDVHHGDGTATLLANDPNIITFSVHCDKNFPARKPDSDIDLALERNTSTDD--YLAALQ 213
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
L L PD+++Y+AG D+ +D LG IS QG+ +RD + +++ + +P+ +
Sbjct: 214 GILPLLLAQHQPDLVIYDAGVDIHQHDELGYFDISKQGLYQRDHYILTQSKAQNIPVAAV 273
Query: 396 TSGGY 400
GGY
Sbjct: 274 IGGGY 278
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LAL G +I++ GG+HHA G GFC + D+++ K I MI+D
Sbjct: 98 GTQLTVDLALEHGIAIHLSGGYHHAHHDFGSGFCLFNDLAIAAKHALSYSHIDKVMIIDC 157
Query: 64 DAHQ 67
D H
Sbjct: 158 DVHH 161
>gi|124266700|ref|YP_001020704.1| hypothetical protein Mpe_A1507 [Methylibium petroleiphilum PM1]
gi|124259475|gb|ABM94469.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 324
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 112/250 (44%), Gaps = 19/250 (7%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHV 221
++E S+ +L +AH ++ + L + + E+ + + + R V
Sbjct: 40 LVEAPAASDGELALAHEPAWVNAVLDGTLSATQQREI-------GFPWSEAMVERSRRSV 92
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLL-----FQSKSIST 276
G T+ A AL G + N+ GG HHAS KG G+C + DI++ +L+ +++
Sbjct: 93 GATIAAARRALDEGVAANLAGGTHHASADKGSGYCVFNDIAVAARLMQAEWHRARRTLLR 152
Query: 277 AMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEK 333
++DLD HQGNG F ++ +F + KEA +EL D YL
Sbjct: 153 VAVIDLDVHQGNGTAAIFRDDPTVFTLSLHGEKNFPFRKEASDLDVELPDGCRDAAYLAA 212
Query: 334 IEAGLER---SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRV 390
++ L P ++ Y AG D D LG L +S G+ RD VF ER +
Sbjct: 213 LDGALATLWARHSDAPPGLVFYLAGADPHEGDRLGRLRLSAAGLAERDRRVFAACAERGI 272
Query: 391 PIVMLTSGGY 400
P+VM GGY
Sbjct: 273 PVVMTMGGGY 282
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLL-----FQSKSISTAM 59
T+ A AL G + N+ GG HHAS KG G+C + DI++ +L+ +++
Sbjct: 95 TIAAARRALDEGVAANLAGGTHHASADKGSGYCVFNDIAVAARLMQAEWHRARRTLLRVA 154
Query: 60 IVDLDAHQ-------FSDYYFPSAHSIKRKRKVEFLKERKALEDEI 98
++DLD HQ F D S+ ++ F KE L+ E+
Sbjct: 155 VIDLDVHQGNGTAAIFRDDPTVFTLSLHGEKNFPFRKEASDLDVEL 200
>gi|410450935|ref|ZP_11304962.1| histone deacetylase family protein [Leptospira sp. Fiocruz LV3954]
gi|418746281|ref|ZP_13302611.1| histone deacetylase family protein [Leptospira santarosai str.
CBC379]
gi|418753911|ref|ZP_13310147.1| histone deacetylase family protein [Leptospira santarosai str.
MOR084]
gi|421110535|ref|ZP_15571030.1| histone deacetylase family protein [Leptospira santarosai str. JET]
gi|409965752|gb|EKO33613.1| histone deacetylase family protein [Leptospira santarosai str.
MOR084]
gi|410015247|gb|EKO77352.1| histone deacetylase family protein [Leptospira sp. Fiocruz LV3954]
gi|410792828|gb|EKR90753.1| histone deacetylase family protein [Leptospira santarosai str.
CBC379]
gi|410804131|gb|EKS10254.1| histone deacetylase family protein [Leptospira santarosai str. JET]
gi|456876398|gb|EMF91500.1| histone deacetylase family protein [Leptospira santarosai str.
ST188]
Length = 270
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 113/243 (46%), Gaps = 9/243 (3%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
+ P+ ++ L + HTE++L F I+E +P + K ++ VG
Sbjct: 17 VYRPEPAKDKDLALVHTEEFLND----FFSLKITERTQSSELP---LTKQIVQSFVLAVG 69
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
GT+ A L + + +IGGGFHH+ + GFC D ++ VKL ++ + +DL
Sbjct: 70 GTILATELTEKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIAVKLYQRAYPGRKILFIDL 129
Query: 283 DAHQGNGYEKDFMNETRIFI--METCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLER 340
D HQGNG F + +F M KE I L T D YLE + L +
Sbjct: 130 DLHQGNGNSVVFQEDPDVFTFSMHQENLYPKKEKSGLDIPLEEGTNDGKYLELLVESLRK 189
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
F PD+I Y AG D D LG L ++ QG+ +RD++V V V+L +GGY
Sbjct: 190 IESDFKPDLIFYIAGADPFEGDSLGDLKLTFQGLRKRDKIVRDFVSALDVSAVILPAGGY 249
Query: 401 LKQ 403
K
Sbjct: 250 AKD 252
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A L + + +IGGGFHH+ + GFC D ++ VKL ++ + +DL
Sbjct: 70 GTILATELTEKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIAVKLYQRAYPGRKILFIDL 129
Query: 64 DAHQ 67
D HQ
Sbjct: 130 DLHQ 133
>gi|399522038|ref|ZP_10762703.1| histone deacetylase superfamily protein [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399110073|emb|CCH39263.1| histone deacetylase superfamily protein [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 311
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 139/312 (44%), Gaps = 32/312 (10%)
Query: 105 SVVTRPWPIVYRPEYNV-----HFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFIT 159
S + P P+VY +Y+ H F +EK ++ + ++LV++ T
Sbjct: 2 STYSMPLPLVYHEDYSPPFPAGHRFPMEK----------------FRLLRDHLVDSGLTT 45
Query: 160 QDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMR 218
+ P+ E L + H Y+ + +S E + +P + R +R
Sbjct: 46 DAALQRPELCPAEILALVHCPDYIAR----YMAGELSYEDQRRLGLP--WSDALAQRTVR 99
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
VGG+L LALR G + ++ GG HHA GFC + D++++ + L ++ + +
Sbjct: 100 A-VGGSLLTAELALRHGLACHLAGGTHHAHYDFPSGFCIFNDLAVIARYLLEAGRVHRVL 158
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIE 335
I D D HQG+G + +E + K I L D+ YL+ ++
Sbjct: 159 IFDCDVHQGDGTARLLEDEPDAVTVSLHCEQNFPARKAQSDWDIPLPRGMGDEDYLKVVD 218
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
L L + PD+++Y+AG DV +D LG L ++ G+ RDE V R +P++ +
Sbjct: 219 DILNYLLPIYQPDLVLYDAGVDVHKDDALGYLQLTDAGLAARDEAVLQHCLGRDIPVLGV 278
Query: 396 TSGGYLKQTARI 407
GGY K A +
Sbjct: 279 IGGGYSKDHAAL 290
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L LALR G + ++ GG HHA GFC + D++++ + L ++ + +I D
Sbjct: 103 GSLLTAELALRHGLACHLAGGTHHAHYDFPSGFCIFNDLAVIARYLLEAGRVHRVLIFDC 162
Query: 64 DAHQ 67
D HQ
Sbjct: 163 DVHQ 166
>gi|344174578|emb|CCA86379.1| histone deacetylase [Ralstonia syzygii R24]
Length = 322
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 100/205 (48%), Gaps = 10/205 (4%)
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST- 276
R G T+ A A+ G ++N+ GG HHA KGGGFC + D ++ + + + +
Sbjct: 89 RRSAGATMAACEAAMIDGIAVNLAGGTHHAYADKGGGFCVFNDAAIASRWIQRRPGRTPD 148
Query: 277 ---AMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHY 330
IVDLD HQGNG ++ +F + KEA + L D+ Y
Sbjct: 149 GFPVAIVDLDVHQGNGTASILRDDASVFTLSVHGEKNYPFRKEASDLDVGLPDGCGDEAY 208
Query: 331 LEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRV 390
LE + L+ F P +I+Y AG D D LG L ++ +G+ RRD+ VF A RR+
Sbjct: 209 LEALAGALDTLAARFAPRLIIYLAGADPHEGDRLGRLKLTMEGLARRDQQVFDFALLRRI 268
Query: 391 PIVMLTSGGY---LKQTARIIADSI 412
PI + +GGY L T + A +I
Sbjct: 269 PIAVTMAGGYGNNLDDTVAVHAQTI 293
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS----TAMI 60
T+ A A+ G ++N+ GG HHA KGGGFC + D ++ + + + + I
Sbjct: 95 TMAACEAAMIDGIAVNLAGGTHHAYADKGGGFCVFNDAAIASRWIQRRPGRTPDGFPVAI 154
Query: 61 VDLDAHQ 67
VDLD HQ
Sbjct: 155 VDLDVHQ 161
>gi|434387387|ref|YP_007097998.1| deacetylase, histone deacetylase/acetoin utilization protein
[Chamaesiphon minutus PCC 6605]
gi|428018377|gb|AFY94471.1| deacetylase, histone deacetylase/acetoin utilization protein
[Chamaesiphon minutus PCC 6605]
Length = 305
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 126/300 (42%), Gaps = 20/300 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY P+Y V L H F K++ ++ L + +T + P
Sbjct: 4 PIVYHPDYVV---PLPDSHRFPMSKFRILYELL--------LADGLVTTEQTFAPTLPPT 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E L + H Y+++ L P + C +GG++ LA
Sbjct: 53 EWLELVHDPAYIQAYYTGTLDPKAQRRIGLPWSPELVNRTCIA------LGGSILTAKLA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
+ G + N GG HHA G GFC + D+++ +++ + +IVDLD HQG+G
Sbjct: 107 IEHGIACNTAGGTHHAFANMGSGFCIFNDLAIASRVIQKLGLAKKILIVDLDVHQGDGTA 166
Query: 292 KDFMNETRIFIMET-CITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
F + +F C + K+ + L ED YL+ + L L PD
Sbjct: 167 AIFQRDPSVFTFSMHCDVNFPSKKQTSDLDVPLREGMEDAEYLKTLSQYLPDLLSQVKPD 226
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
+++Y+AG D ++D LG LA++ GI RD V + P+ + GGY + ++
Sbjct: 227 LVLYDAGVDPHISDRLGKLALTNTGIFDRDFYVLDTCVSQGYPVACVIGGGYAENIPSLV 286
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ LA+ G + N GG HHA G GFC + D+++ +++ + +IVDL
Sbjct: 98 GSILTAKLAIEHGIACNTAGGTHHAFANMGSGFCIFNDLAIASRVIQKLGLAKKILIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|384083397|ref|ZP_09994572.1| histone deacetylase superfamily protein [gamma proteobacterium
HIMB30]
Length = 308
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 134/305 (43%), Gaps = 30/305 (9%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIV+ Y+ F H F K++ + ++ H+ ++ P
Sbjct: 5 PIVWDAGYSPVF---PDSHRFPMAKFRLLKEWVDHHV----------PTTELVTPIPCPT 51
Query: 172 EQLLIAHTEKYLKSLK-WSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+ L+ H Y+ + S N AI E+ +P + + R +GGT+ L
Sbjct: 52 DVLMETHDPDYVSGFQSGSLNAKAIREI----GLP--WSEGLRDR-TNLALGGTMRTCEL 104
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
A G + ++ GG HHA +G GFC Y D+++ + L S +I D D HQG+G
Sbjct: 105 AKTYGLASHLAGGTHHAHYDRGSGFCIYNDLAVSARYLVNQGLASRVLIFDCDVHQGDGT 164
Query: 291 EKDFMNETRIFIMETCITSKAKEAIRCRIE------LAPYTEDQHYLEKIEAGLERSLRS 344
++++ F TC K ++E D YL + LE + S
Sbjct: 165 ASILAHDSQTF---TCSIHAEKNFPVRKVESDLDVNCPDGMTDDAYLSLVFETLESVITS 221
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT 404
+ PD ++Y+AG+DV ++D LG L+I+ G+ RRD V + R +P + GGY
Sbjct: 222 WHPDFVIYDAGSDVHIDDALGRLSITTDGLYRRDYGVISRIRNAGLPCATVIGGGYDNDR 281
Query: 405 ARIIA 409
AR+ A
Sbjct: 282 ARVAA 286
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LA G + ++ GG HHA +G GFC Y D+++ + L S +I D
Sbjct: 97 GTMRTCELAKTYGLASHLAGGTHHAHYDRGSGFCIYNDLAVSARYLVNQGLASRVLIFDC 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|91788947|ref|YP_549899.1| histone deacetylase superfamily protein [Polaromonas sp. JS666]
gi|91698172|gb|ABE45001.1| histone deacetylase superfamily [Polaromonas sp. JS666]
Length = 337
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 115/250 (46%), Gaps = 26/250 (10%)
Query: 169 VSEEQLLIAHTEKYLKSLK-WSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA 227
S+ +L + HT Y++++ S AA E+ + R G T+ A
Sbjct: 69 ASDGELALVHTPAYIEAITHGSLPPAAQREI-------GFPWSPGMAERARRSAGATVAA 121
Query: 228 GFLAL-----RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLL---------FQSKS 273
+AL +G + N+ GG HHA KG GFC + D ++ +L+ K
Sbjct: 122 ARVALGTGTRPQGVAANMAGGTHHAYAHKGSGFCVFNDSAVTARLMQAEWGRRHRPDRKP 181
Query: 274 ISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHY 330
+ A ++DLD HQGNG F N+ +F + KEA +EL D Y
Sbjct: 182 LQVA-VIDLDVHQGNGTAHIFANDPSVFTLSLHGQKNFPFRKEASDLDVELPDGCTDAPY 240
Query: 331 LEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRV 390
L+ +E L+ R F P ++V+ AG D D LG LA+S G+ RD VF A +RR+
Sbjct: 241 LQALEHALDELDRRFDPGLVVFLAGADPFEGDRLGRLALSFDGLEARDRRVFDWAWQRRI 300
Query: 391 PIVMLTSGGY 400
P+ +GGY
Sbjct: 301 PLTFSMAGGY 310
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 10/62 (16%)
Query: 15 RGWSINIGGGFHHASETKGGGFCAYADISLLVKLL---------FQSKSISTAMIVDLDA 65
+G + N+ GG HHA KG GFC + D ++ +L+ K + A ++DLD
Sbjct: 133 QGVAANMAGGTHHAYAHKGSGFCVFNDSAVTARLMQAEWGRRHRPDRKPLQVA-VIDLDV 191
Query: 66 HQ 67
HQ
Sbjct: 192 HQ 193
>gi|421501962|ref|ZP_15948918.1| histone deacetylase superfamily protein [Pseudomonas mendocina
DLHK]
gi|400347246|gb|EJO95600.1| histone deacetylase superfamily protein [Pseudomonas mendocina
DLHK]
Length = 306
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 141/307 (45%), Gaps = 32/307 (10%)
Query: 110 PWPIVYRPEYNV-----HFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNII 164
P P+VY +Y+ H F +EK ++ + ++LV++ + +
Sbjct: 2 PLPLVYHEDYSPPFPAGHRFPMEK----------------FRLLRDHLVDSGLTSDAELQ 45
Query: 165 EPQEVSEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGG 223
P+ E L +AH Y+ + +S E + +P + + R +R VGG
Sbjct: 46 RPELCPAEILALAHCPDYIAR----YMAGELSYEDQRRLGLP--WSEALARRTVRA-VGG 98
Query: 224 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 283
+L LALR G + ++ GG HHA GFC + D++++ + L ++ + +I D D
Sbjct: 99 SLLTAELALRHGLACHLAGGTHHAHYDFPSGFCIFNDLAVIARYLLEAGRVHRVLIFDCD 158
Query: 284 AHQGNGYEKDFMNETR-IFIMETCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLER 340
HQG+G + +E + + C + K I L D YL+ ++ L
Sbjct: 159 VHQGDGTARLLEDEPDAVTVSLHCEQNFPARKAQSDWDIPLPRGMGDADYLKVVDDTLNY 218
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
L + PD+++Y+AG DV +D LG L ++ G+ RDE V R +P++ + GGY
Sbjct: 219 LLPIYQPDLVLYDAGVDVHKDDALGYLQLTDAGLAARDEAVLHHCLGRDIPVLGVIGGGY 278
Query: 401 LKQTARI 407
K A +
Sbjct: 279 SKDHAAL 285
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L LALR G + ++ GG HHA GFC + D++++ + L ++ + +I D
Sbjct: 98 GSLLTAELALRHGLACHLAGGTHHAHYDFPSGFCIFNDLAVIARYLLEAGRVHRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|388466851|ref|ZP_10141061.1| histone deacetylase family protein [Pseudomonas synxantha BG33R]
gi|388010431|gb|EIK71618.1| histone deacetylase family protein [Pseudomonas synxantha BG33R]
Length = 306
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 139/299 (46%), Gaps = 24/299 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F P D + F L H LV++ ++ PQ
Sbjct: 2 PLPLIYHEDYSPEF-------PADHRFPMDKFRLLRDH----LVDSGLTQDSQLLRPQLC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAG 228
+ L +AH Y++ + +S E + +P + + R +R VGG++ A
Sbjct: 51 PADILALAHEPGYIER----YMGGELSREDQRRLGLP--WSEALARRTVRA-VGGSILAA 103
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
AL G + ++ GG HHA GFC + D++++ + L S ++ +I D D HQG+
Sbjct: 104 EQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISRYLLASGRVNRVLIFDCDVHQGD 163
Query: 289 GYEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRS 344
G + +++T I + K A + + I L D YL+ ++ L L
Sbjct: 164 GTAR-ILHDTPEAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLKVVDDALNYLLPL 222
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ G+ RDE V R +P++ + GGY K
Sbjct: 223 YQPDLVLYDAGVDVHKDDALGYLKLTDAGVAARDESVMRHCLGRDIPVMGVIGGGYSKD 281
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ A AL G + ++ GG HHA GFC + D++++ + L S ++ +I D
Sbjct: 98 GSILAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISRYLLASGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|330445427|ref|ZP_08309079.1| histone deacetylase domain protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328489618|dbj|GAA03576.1| histone deacetylase domain protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 302
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 130/303 (42%), Gaps = 25/303 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ L + H + K++ ++ + +++ + ++ +P +
Sbjct: 3 PLVYHPIYSA--LSLPEKHRYPINKYRLLYEAI--------MDSAHANKVSVHQPNKADI 52
Query: 172 EQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
++ H +Y+ +L A + + + + + + GGT L
Sbjct: 53 NKVKALHAPEYVDALCNNQLPAAKMRRI-------GFPWSEALIERTLFSTGGTQLTVDL 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G +I++ GG+HHA G GFC + D++ K I MI+D D H G+G
Sbjct: 106 ALEHGIAIHLSGGYHHAHHDFGSGFCLFNDLAFAAKHALSYTHIDKVMIIDCDVHHGDGT 165
Query: 291 EKDFMNETRIFIMET-CITSKAKEAIRCRIELA----PYTEDQHYLEKIEAGLERSLRSF 345
+ I C + I+LA TED YL L +L +
Sbjct: 166 ATLLADNPNIITFSVHCDKNFPARKPDSTIDLALPRETSTED--YLNAFTGLLPLALAQY 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PD+++Y+AG D+ +D LG +S G+ +RD V +ER +P+ + GGY Q
Sbjct: 224 QPDLVIYDAGVDIHQHDELGYFNVSTSGLYQRDHAVLSLCKERNIPVAAVIGGGYRTQHQ 283
Query: 406 RII 408
++
Sbjct: 284 ELV 286
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 11 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
LAL G +I++ GG+HHA G GFC + D++ K I MI+D D H
Sbjct: 105 LALEHGIAIHLSGGYHHAHHDFGSGFCLFNDLAFAAKHALSYTHIDKVMIIDCDVHH 161
>gi|325106665|ref|YP_004267733.1| histone deacetylase [Planctomyces brasiliensis DSM 5305]
gi|324966933|gb|ADY57711.1| Histone deacetylase [Planctomyces brasiliensis DSM 5305]
Length = 302
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 119/266 (44%), Gaps = 16/266 (6%)
Query: 152 LVEAKFITQDNIIEPQ------EVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP 205
L+ A+ + Q I+EPQ S+EQLL HT +YLK +K + + P
Sbjct: 26 LLRARLLEQ-GILEPQVLHEAPAASDEQLLRVHTAEYLKRVKQG---GLTKQETRRIGFP 81
Query: 206 NYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLV 265
+ + R R A R IN+ GG HH+ G G+C + D++
Sbjct: 82 --WSLEMVERSRRSTGATIAAAHAALTTR-VGINLAGGTHHSFADCGEGYCVFNDVACAS 138
Query: 266 KLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELA 322
+ L Q+ + +++D+D HQGNG F + +F K + L
Sbjct: 139 RDLQQTVGLGQVLVIDVDVHQGNGTAAIFEKDPSVFTFSIHGAKNFPLKKTISDLDVPLD 198
Query: 323 PYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVF 382
TED YL+++ AGLE++ P+ + Y AG D D G + +S G+ +RD+LV
Sbjct: 199 DNTEDDEYLQRLTAGLEQAFARCEPEFVFYVAGADPYHEDRFGRMKLSKDGLRKRDQLVL 258
Query: 383 MKARERRVPIVMLTSGGYLKQTARII 408
R +P+ ++ +GGY I+
Sbjct: 259 SACASRNLPVTVVMAGGYAPNVEDIV 284
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 19 INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
IN+ GG HH+ G G+C + D++ + L Q+ + +++D+D HQ
Sbjct: 111 INLAGGTHHSFADCGEGYCVFNDVACASRDLQQTVGLGQVLVIDVDVHQ 159
>gi|440683109|ref|YP_007157904.1| Histone deacetylase [Anabaena cylindrica PCC 7122]
gi|428680228|gb|AFZ58994.1| Histone deacetylase [Anabaena cylindrica PCC 7122]
Length = 305
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 91/191 (47%), Gaps = 3/191 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
+GGT+ LAL G + N GG HHA G GFC + D+++ +++ + +IV
Sbjct: 96 LGGTILTAQLALNHGLACNTAGGTHHAFPDYGSGFCIFNDLAVASRVIQKLGLAKNILIV 155
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAG 337
DLD HQG+G F N+ +F K+ I L ED+ YL+ +
Sbjct: 156 DLDVHQGDGTAFIFHNDNSVFTFSMHCEDNFPGTKQKSDLDIPLPLGMEDEAYLQTLANY 215
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L L PD++ Y+AG D +ND LG LA++ GI RR+ V P+ +
Sbjct: 216 LPDLLSQIKPDLVFYDAGVDTHINDKLGKLALTDTGIFRREMQVLNTCVSAGYPVACVIG 275
Query: 398 GGYLKQTARII 408
GGY + ++
Sbjct: 276 GGYAEDMKSLV 286
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G + N GG HHA G GFC + D+++ +++ + +IVDL
Sbjct: 98 GTILTAQLALNHGLACNTAGGTHHAFPDYGSGFCIFNDLAVASRVIQKLGLAKNILIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|410697943|gb|AFV77011.1| deacetylase, histone deacetylase/acetoin utilization protein
[Thermus oshimai JL-2]
Length = 293
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 128/281 (45%), Gaps = 25/281 (8%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQ-EVSEEQLLIAHTEKY 182
L + HPF K++ + L + ++EP EV +E L +AH Y
Sbjct: 11 LDLPEGHPFPLYKYRGVAEALRGLL--------------LLEPAPEVPKEALFLAHDPLY 56
Query: 183 LKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGG 242
L+ + F + + +P +LR + GGTL A AL G +N+ G
Sbjct: 57 LERV---FREGLSRKESLRLGLP---FTPAFLRRALHAAGGTLMAALDALEEGLGLNLAG 110
Query: 243 GFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFI 302
G HHA + G+ + D+++ V L + +++DLDAHQGNG F + ++
Sbjct: 111 GTHHAFPDRAEGYSLFNDVAVAVAWLRRRGFSGRVLVLDLDAHQGNGTAVFFGQDPTVYT 170
Query: 303 METCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVL 359
+ KE + L D YL +E LE++ +F P ++ YNAG DVL
Sbjct: 171 LSLHGERNYPLKKERSDLDVGLPDGVGDGAYLRALEEALEKA-GAFRPALVFYNAGVDVL 229
Query: 360 LNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
D G L++S +G+ +RD V+ +E +V++ GGY
Sbjct: 230 KGDRFGRLSLSLEGVAQRDLRVYRFVKEVGAALVVVMGGGY 270
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL A AL G +N+ GG HHA + G+ + D+++ V L + +++DL
Sbjct: 91 GTLMAALDALEEGLGLNLAGGTHHAFPDRAEGYSLFNDVAVAVAWLRRRGFSGRVLVLDL 150
Query: 64 DAHQ 67
DAHQ
Sbjct: 151 DAHQ 154
>gi|422660331|ref|ZP_16722745.1| histone deacetylase family protein [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|331018938|gb|EGH98994.1| histone deacetylase family protein [Pseudomonas syringae pv.
lachrymans str. M302278]
Length = 305
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 140/296 (47%), Gaps = 22/296 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y +Y+ F + + P D ++ + +YLV++ ++ P+
Sbjct: 4 PLIYHDDYSPAFAQDHRF-PMDK----------FRLLRDYLVDSGLTRDVQLMRPELCPV 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ L +AH Y+ S S +++ E + +P + + R +R VGG+L A
Sbjct: 53 DILALAHDPSYI-SRYLSGDLS--REDQRRLGLP--WSEALARRTIRA-VGGSLLTAEQA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G + ++ GG HHA GFC + D++++ + L QS + +I D D HQG+G
Sbjct: 107 LTHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVGKVLIFDCDVHQGDGTA 166
Query: 292 KDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ + +T I + K A + R I L D YL ++ L L + P
Sbjct: 167 R-ILADTEDAITVSLHCEKNFPARKARSDWDIPLPMGMGDADYLNVVDDLLNYLLPFYKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
D+++Y+AG DV +D LG L ++ +G+ RDE V R +P++ + GGY K
Sbjct: 226 DLVLYDAGVDVHKDDALGYLQLTDRGLANRDEAVLRHCLGRDIPVMGVIGGGYSKD 281
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L AL G + ++ GG HHA GFC + D++++ + L QS + +I D
Sbjct: 98 GSLLTAEQALTHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVGKVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|13474726|ref|NP_106295.1| hypothetical protein mll5679 [Mesorhizobium loti MAFF303099]
gi|14025481|dbj|BAB52081.1| mll5679 [Mesorhizobium loti MAFF303099]
Length = 300
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/297 (29%), Positives = 129/297 (43%), Gaps = 26/297 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQD--NIIEPQ 167
P IV+ P+Y+ F H F K+ + L + D N EP
Sbjct: 2 PLQIVHHPDYDAGF---ATNHRFPMSKYPLLMEALRAR--------GLASPDALNTTEPA 50
Query: 168 EVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA 227
S L +AH Y+ + + + ++ + P + LR + GGT+ A
Sbjct: 51 PAS--WLKLAHAADYVDQV---ISCSVPEKIEREIGFP--VGPRVSLR-AQLATGGTILA 102
Query: 228 GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQG 287
LALR G + N GG HHA +G GFC + D+++ +L + ++VDLD HQG
Sbjct: 103 ARLALRHGIACNTAGGSHHARRAQGAGFCTFNDVAVASLVLLDEGAAQNILVVDLDVHQG 162
Query: 288 NGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGL-ERSLR 343
+G +E +F K A I L T D YL ++ L E S R
Sbjct: 163 DGTADILSDEPGVFTFSMHGERNYPVRKIASDLDIALPDGTGDAAYLRRLATILPELSAR 222
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
+ DI+ YNAG DV D LG LA+S G+ RDE+V R +P+ + GGY
Sbjct: 223 ARW-DIVFYNAGVDVHAEDRLGRLALSNGGLRARDEMVIGHFRALGIPVCGVIGGGY 278
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LALR G + N GG HHA +G GFC + D+++ +L + ++VDL
Sbjct: 98 GTILAARLALRHGIACNTAGGSHHARRAQGAGFCTFNDVAVASLVLLDEGAAQNILVVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|422300155|ref|ZP_16387688.1| histone deacetylase [Pseudomonas avellanae BPIC 631]
gi|422587598|ref|ZP_16662268.1| histone deacetylase family protein [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|422654668|ref|ZP_16717402.1| histone deacetylase family protein [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330873513|gb|EGH07662.1| histone deacetylase family protein [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330967685|gb|EGH67945.1| histone deacetylase family protein [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|407987739|gb|EKG30457.1| histone deacetylase [Pseudomonas avellanae BPIC 631]
Length = 305
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 140/296 (47%), Gaps = 22/296 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y +Y+ F + + P D ++ + +YLV++ ++ P+
Sbjct: 4 PLIYHDDYSPAFPQDHRF-PMDK----------FRLLRDYLVDSGLTRDVQLMRPELCPA 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ L +AH Y+ S S +++ E + +P + + R +R VGG+L A
Sbjct: 53 DILALAHDPSYI-SRYLSGDLS--REDQRRLGLP--WSEALARRTIRA-VGGSLLTAEQA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G + ++ GG HHA GFC + D++++ + L QS + +I D D HQG+G
Sbjct: 107 LTHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVGKVLIFDCDVHQGDGTA 166
Query: 292 KDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ + +T I + K A + + I L D YL ++ L L + P
Sbjct: 167 R-ILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVVDDLLNYLLPFYKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
D+++Y+AG DV +D LG L ++ QG+ RDE V R +P++ + GGY K
Sbjct: 226 DLVLYDAGVDVHKDDALGYLQLTDQGLANRDEAVLRHCLGRDIPVMGVIGGGYSKD 281
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L AL G + ++ GG HHA GFC + D++++ + L QS + +I D
Sbjct: 98 GSLLTAEQALTHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVGKVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|330504953|ref|YP_004381822.1| histone deacetylase superfamily protein [Pseudomonas mendocina
NK-01]
gi|328919239|gb|AEB60070.1| histone deacetylase superfamily protein [Pseudomonas mendocina
NK-01]
Length = 306
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 138/303 (45%), Gaps = 32/303 (10%)
Query: 110 PWPIVYRPEYNV-----HFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNII 164
P P+VY +Y+ H F +EK ++ + ++L+++ + +
Sbjct: 2 PLPLVYHEDYSPPFPTGHRFPMEK----------------FRLLRDHLIDSGLTSDAELQ 45
Query: 165 EPQEVSEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGG 223
P+ E L + H Y+ + +S E + +P + + R +R VGG
Sbjct: 46 RPELCPAEVLALVHCPDYIAR----YMAGELSYEDQRRLGLP--WSEALARRTVRA-VGG 98
Query: 224 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 283
+L LALR G + ++ GG HHA GFC + D++++ + L ++ + +I D D
Sbjct: 99 SLLTAELALRHGLACHLAGGTHHAHYDFPSGFCIFNDLAVIARYLLETGRVHRVLIFDCD 158
Query: 284 AHQGNGYEKDFMNETR-IFIMETCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLER 340
HQG+G + NE I + C + K I L D YL+ ++ L
Sbjct: 159 VHQGDGTARLLENEPDAITVSLHCEQNFPARKAQSDWDIPLPRGMGDADYLKVVDDTLNY 218
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
L + PD+++Y+AG DV +D LG L ++ G+ RDE V R +P++ + GGY
Sbjct: 219 LLPIYQPDLVLYDAGVDVHQDDALGYLQLTDAGLAARDEAVLQHCLGRDIPVLGVIGGGY 278
Query: 401 LKQ 403
K
Sbjct: 279 SKD 281
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L LALR G + ++ GG HHA GFC + D++++ + L ++ + +I D
Sbjct: 98 GSLLTAELALRHGLACHLAGGTHHAHYDFPSGFCIFNDLAVIARYLLETGRVHRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|424069461|ref|ZP_17806907.1| histone deacetylase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|407994543|gb|EKG35114.1| histone deacetylase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
Length = 305
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 140/296 (47%), Gaps = 22/296 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y +Y+ F + P D ++ + +YL+++ + ++ P+
Sbjct: 4 PLIYHEDYSPDFPADHRF-PMDK----------FRLLRDYLIDSGLTSDVQLMRPELCPA 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ L +AH Y+ S S +++ E + +P + + R +R VGG+L A
Sbjct: 53 DILALAHDPSYI-SRYLSGDLS--REDQRRLGLP--WSEALARRTIRA-VGGSLLTAEQA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G + ++ GG HHA GFC + D++++ + L QS + +I D D HQG+G
Sbjct: 107 LTHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQGDGTA 166
Query: 292 KDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ + +T I + K A + + I L D YL ++ L L + P
Sbjct: 167 R-ILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVVDDLLNYLLPFYKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
D+++Y+AG DV +D LG L ++ QG+ RDE V R +P++ + GGY K
Sbjct: 226 DLVLYDAGVDVHKDDALGYLQLTDQGLANRDEAVLRHCLGRDIPVMGVIGGGYSKD 281
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L AL G + ++ GG HHA GFC + D++++ + L QS + +I D
Sbjct: 98 GSLLTAEQALTHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|418668158|ref|ZP_13229562.1| histone deacetylase family protein [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|410756191|gb|EKR17817.1| histone deacetylase family protein [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
Length = 271
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 114/244 (46%), Gaps = 10/244 (4%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
I +P + L + HT+++L +S N+ ++ L + K + VG
Sbjct: 17 IYKPDLAKTKDLSLVHTQEFLDDF-FSLNITERTQYSELP------LTKQIVHSFVLAVG 69
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
GT+ + LA + + +IGGGFHH+ + GFC D ++ KL + + +DL
Sbjct: 70 GTILSMELAQKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIASKLYQKEYPDKKILFIDL 129
Query: 283 DAHQGNGYEKDFMNETRIFI--METCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLER 340
D HQGNG F N+ +F M KE I L D+ YLE +E L +
Sbjct: 130 DLHQGNGNSFIFQNDPDVFTFSMHQENLYPKKEKSDLDISLEEGIGDKEYLELLEKSLRK 189
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE-RRVPIVMLTSGG 399
F PD+I Y AG D D LG L ++ QG+ +RD++V A +V+L +GG
Sbjct: 190 IESDFKPDLIFYIAGADPFEGDSLGDLKLTFQGLRKRDQIVRDFAYSLNDTRVVILPAGG 249
Query: 400 YLKQ 403
Y K
Sbjct: 250 YAKD 253
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ + LA + + +IGGGFHH+ + GFC D ++ KL + + +DL
Sbjct: 70 GTILSMELAQKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIASKLYQKEYPDKKILFIDL 129
Query: 64 DAHQ 67
D HQ
Sbjct: 130 DLHQ 133
>gi|395647111|ref|ZP_10434961.1| putative histone deacetylase family protein [Pseudomonas
extremaustralis 14-3 substr. 14-3b]
Length = 306
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 137/299 (45%), Gaps = 24/299 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F P D + F L H LV + +++ P
Sbjct: 2 PLPLIYHDDYSPEF-------PADHRFPMDKFRLLRDH----LVSSGLTQDSHLLRPALC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAG 228
E L +AH Y++ + +S E + +P + + R +R VGG+L A
Sbjct: 51 PPEILALAHEPGYIER----YMSGELSREDQRRLGLP--WSEALARRTVRA-VGGSLLAA 103
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
AL G + ++ GG HHA GFC + D++++ L S ++ +I D D HQG+
Sbjct: 104 EQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDCDVHQGD 163
Query: 289 GYEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRS 344
G + +++T I + K A + + I L D YL+ ++ L L
Sbjct: 164 GTAR-ILHDTPDAITVSLHCEKNFPARKAQSDWDIPLPMGMADADYLKVVDDALNYLLPL 222
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ G+ RDE V R +P++ + GGY K
Sbjct: 223 YQPDLVLYDAGVDVHKDDALGYLKLTDAGVAARDESVMRHCLGRDIPVMGVIGGGYSKD 281
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ L S ++ +I D
Sbjct: 98 GSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|325271806|ref|ZP_08138273.1| histone deacetylase superfamily protein [Pseudomonas sp. TJI-51]
gi|324103053|gb|EGC00433.1| histone deacetylase superfamily protein [Pseudomonas sp. TJI-51]
Length = 304
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 135/298 (45%), Gaps = 22/298 (7%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F E P D + H ++LV++ T ++ P
Sbjct: 2 PLPLIYHEDYSPEF-PAEHRFPMDKFRLLH----------DHLVDSGLTTDQALLRPDIC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
+ L +AH Y+ N E + +P + + R +R VGG+L
Sbjct: 51 PNDILALAHDRDYIARY---MNGELSREDQRRLGLP--WSEALARRTVRA-VGGSLLTAE 104
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL+ G + ++ GG HHA GFC + D++++ + L ++ + +I D D HQG+G
Sbjct: 105 LALQHGVACHLAGGTHHAHYDHPAGFCIFNDLAVISRYLLEAGRVQRVLIFDCDVHQGDG 164
Query: 290 YEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSF 345
+ +++T I + + A + I L D YL ++ L L +
Sbjct: 165 TAR-ILHDTPEAITVSLHCEQNFPARKANSDWDIPLPRGMGDTAYLNVVDDTLNYLLPLY 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD+++Y+AG DV +D LG L ++ G+ RDE V R + ++ + GGY K
Sbjct: 224 QPDLVLYDAGVDVHKDDALGYLQLTDAGVAARDEAVLRHCLGRDIAVMGVIGGGYSKD 281
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L LAL+ G + ++ GG HHA GFC + D++++ + L ++ + +I D
Sbjct: 98 GSLLTAELALQHGVACHLAGGTHHAHYDHPAGFCIFNDLAVISRYLLEAGRVQRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|428319276|ref|YP_007117158.1| Histone deacetylase [Oscillatoria nigro-viridis PCC 7112]
gi|428242956|gb|AFZ08742.1| Histone deacetylase [Oscillatoria nigro-viridis PCC 7112]
Length = 305
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 93/183 (50%), Gaps = 3/183 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
V GT+ LAL G + N GG HHA G GFC + D+++ ++L +S + +IV
Sbjct: 96 VAGTVLTAKLALDCGLACNTAGGTHHAFPAFGSGFCIFNDLAIASRVLQKSGLVRKVLIV 155
Query: 281 DLDAHQGNGYEKDFMNETRIFIMET-CITS--KAKEAIRCRIELAPYTEDQHYLEKIEAG 337
DLD HQG+G F +++ +F C + K+ + L ED YL+ ++
Sbjct: 156 DLDVHQGDGTAVIFQDDSSVFTFSMHCEVNFPGTKQKGDLDVPLPVGMEDDEYLQTLDKF 215
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L L S PD+++Y+AG D D LG LA++ G+ RR+ V M P+ +
Sbjct: 216 LPDLLSSVKPDLVLYDAGVDPHQGDKLGKLALTDTGLFRREMQVLMACLAGGYPVACVIG 275
Query: 398 GGY 400
GGY
Sbjct: 276 GGY 278
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G + N GG HHA G GFC + D+++ ++L +S + +IVDL
Sbjct: 98 GTVLTAKLALDCGLACNTAGGTHHAFPAFGSGFCIFNDLAIASRVLQKSGLVRKVLIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|406676510|ref|ZP_11083696.1| hypothetical protein HMPREF1170_01904 [Aeromonas veronii AMC35]
gi|404626733|gb|EKB23543.1| hypothetical protein HMPREF1170_01904 [Aeromonas veronii AMC35]
Length = 298
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 91/192 (47%), Gaps = 5/192 (2%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
VG T+ A AL +G + I GG+HHA G GFC + D+ + + +I+
Sbjct: 93 VGATIAASRHALEQGCGLQISGGYHHAHRDHGSGFCLFNDLVIAAQACLDEGRCEQVLII 152
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSKA----KEAIRCRIELAPYTEDQHYLEKIEA 336
DLD HQG+G E R I + K A L D YL ++
Sbjct: 153 DLDVHQGDG-SAALCAERRDIITLSLHGEHNFPHHKAASHLDFPLPSGMTDDAYLTTLQQ 211
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
L +LR + PD+I+Y AG DV D LG L++S +G+ RD +VF A VPI +
Sbjct: 212 ALSLALRLYSPDLILYQAGVDVHHADELGYLSLSDEGVRLRDAMVFDCALLHGVPIAAVP 271
Query: 397 SGGYLKQTARII 408
GGY + ++I
Sbjct: 272 GGGYRRDWQQLI 283
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
T+ A AL +G + I GG+HHA G GFC + D+ + + +I+DLD
Sbjct: 96 TIAASRHALEQGCGLQISGGYHHAHRDHGSGFCLFNDLVIAAQACLDEGRCEQVLIIDLD 155
Query: 65 AHQ 67
HQ
Sbjct: 156 VHQ 158
>gi|417950544|ref|ZP_12593664.1| histone deacetylase/AcuC/AphA family protein [Vibrio splendidus
ATCC 33789]
gi|342806327|gb|EGU41555.1| histone deacetylase/AcuC/AphA family protein [Vibrio splendidus
ATCC 33789]
Length = 306
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVS 170
P++Y P Y+ L + H + K++ + + + + + L ++KF + +P+ VS
Sbjct: 3 PLIYHPIYSQ--LPLPEGHRYPINKYQLLHSAVEALMDSDPLWKSKF----EVFQPKPVS 56
Query: 171 EEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
EQ+ H Y+ L S A + + + + + Y GGT A
Sbjct: 57 VEQVKQVHDSDYVDLLVSGSLPAAKMRRI-------GFPWSEQLIERTLYSSGGTCLAAD 109
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
+A+ G +I++ GG+HHA G GFC D+ L K + + +IVD D H G+G
Sbjct: 110 MAIESGLAIHLSGGYHHAHHDFGSGFCLLNDLVLAAKHALTFEQVDKVLIVDSDVHHGDG 169
Query: 290 YEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
I + C + K + L TED+ +L E + ++
Sbjct: 170 TATLCQESDEIITLSFHCDKNFPARKPLSDLDVPLNRETEDEEFLRCFEQVTKLAIAHHQ 229
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
PD+I+Y+AG D+ +D LG L +S QGI RD + A+ +P+ + GGY Q
Sbjct: 230 PDLIIYDAGVDIHQDDELGYLNVSTQGIFERDCFMINLAKSESIPMACVVGGGYRTQHQD 289
Query: 407 II 408
++
Sbjct: 290 LV 291
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A +A+ G +I++ GG+HHA G GFC D+ L K + + +IVD
Sbjct: 103 GTCLAADMAIESGLAIHLSGGYHHAHHDFGSGFCLLNDLVLAAKHALTFEQVDKVLIVDS 162
Query: 64 DAHQ 67
D H
Sbjct: 163 DVHH 166
>gi|330830255|ref|YP_004393207.1| histone deacetylase/AcuC/AphA family protein [Aeromonas veronii
B565]
gi|423209075|ref|ZP_17195629.1| hypothetical protein HMPREF1169_01147 [Aeromonas veronii AER397]
gi|328805391|gb|AEB50590.1| Histone deacetylase/AcuC/AphA family protein [Aeromonas veronii
B565]
gi|404618920|gb|EKB15840.1| hypothetical protein HMPREF1169_01147 [Aeromonas veronii AER397]
Length = 298
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 89/191 (46%), Gaps = 3/191 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
VG T+ A AL +G + I GG+HHA G GFC + D+ + + +IV
Sbjct: 93 VGATVAASRHALEQGCGLQISGGYHHAHRDHGSGFCLFNDLVIAAQACLDEGRCEQVLIV 152
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAG 337
DLD HQG+G I + K L D YL ++
Sbjct: 153 DLDVHQGDGSAALCAGRRDIITLSLHGEHNFPHHKATSHLDFPLPSGMTDDAYLTTLQQA 212
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L +LR + PD+I+Y AG DV D LG L++S +G+ RD +VF A + VPI +
Sbjct: 213 LSLALRLYSPDLILYQAGVDVHHADELGYLSLSDEGVRLRDAMVFDCAVQHGVPIAAVPG 272
Query: 398 GGYLKQTARII 408
GGY + ++I
Sbjct: 273 GGYRRDWQQLI 283
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
T+ A AL +G + I GG+HHA G GFC + D+ + + +IVDLD
Sbjct: 96 TVAASRHALEQGCGLQISGGYHHAHRDHGSGFCLFNDLVIAAQACLDEGRCEQVLIVDLD 155
Query: 65 AHQ 67
HQ
Sbjct: 156 VHQ 158
>gi|398896408|ref|ZP_10647537.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM55]
gi|398178668|gb|EJM66313.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM55]
Length = 306
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 136/297 (45%), Gaps = 24/297 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y +Y+ F P D + F L H LV++ +++ P
Sbjct: 4 PLIYHEDYSPEF-------PADHRFPMDKFRLLRDH----LVDSGLTRDADLLRPDLCPA 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+ L +AH Y++ + +S E + +P + + R +R VGG+L A
Sbjct: 53 DILALAHDPSYIER----YMSGELSREDQRRLGLP--WSEALARRTVRA-VGGSLLAAEQ 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G + ++ GG HHA GFC + D++++ L +S ++ +I D D HQG+G
Sbjct: 106 ALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDCDVHQGDGT 165
Query: 291 EKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
+ N + E ++ E+ I L D YL+ ++ L L +
Sbjct: 166 ARILHNTPEAVTVSLHCEKNFPARKAES-DWDIPLPNGMGDADYLKVVDDALNYLLPLYQ 224
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P+V + GGY K
Sbjct: 225 PDLVLYDAGVDVHKDDALGYLKLTDEGVAARDESVMRHCLGRDIPVVGVIGGGYSKD 281
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ L +S ++ +I D
Sbjct: 98 GSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|146308737|ref|YP_001189202.1| histone deacetylase superfamily protein [Pseudomonas mendocina ymp]
gi|145576938|gb|ABP86470.1| histone deacetylase superfamily [Pseudomonas mendocina ymp]
Length = 306
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 141/308 (45%), Gaps = 34/308 (11%)
Query: 110 PWPIVYRPEYNV-----HFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNII 164
P P+VY +Y+ H F +EK ++ + ++LV++ + +
Sbjct: 2 PLPLVYHEDYSPPFPAGHRFPMEK----------------FRLLRDHLVDSGLTSDAELQ 45
Query: 165 EPQEVSEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGG 223
P+ E L + H Y+ + +S E + +P + + R +R VGG
Sbjct: 46 RPELCPAEILALVHCPDYIAR----YMAGELSYEDQRRLGLP--WSEALARRTVRA-VGG 98
Query: 224 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 283
+L LALR G + ++ GG HHA GFC + D++++ + L ++ + +I D D
Sbjct: 99 SLLTAELALRHGLACHLAGGTHHAHYDFPSGFCIFNDLAVIARYLLEAGRVHRVLIFDCD 158
Query: 284 AHQGNGYEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLE 339
HQG+G + +E + E ++ E+ I L D YL+ ++ L
Sbjct: 159 VHQGDGTARLLEDEPDAITVSLHCEQNFPARKAES-DWDIPLPRGMGDADYLKVVDDTLN 217
Query: 340 RSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGG 399
L + PD+++Y+AG DV +D LG L ++ G+ RDE V R +P++ + GG
Sbjct: 218 YLLPIYQPDLVLYDAGVDVHKDDALGYLQLTDAGLAARDEAVLHHCLGRDIPVLGVIGGG 277
Query: 400 YLKQTARI 407
Y K A +
Sbjct: 278 YSKDHAAL 285
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L LALR G + ++ GG HHA GFC + D++++ + L ++ + +I D
Sbjct: 98 GSLLTAELALRHGLACHLAGGTHHAHYDFPSGFCIFNDLAVIARYLLEAGRVHRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|294056259|ref|YP_003549917.1| histone deacetylase superfamily protein [Coraliomargarita
akajimensis DSM 45221]
gi|293615592|gb|ADE55747.1| histone deacetylase superfamily [Coraliomargarita akajimensis DSM
45221]
Length = 302
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 132/318 (41%), Gaps = 36/318 (11%)
Query: 115 YRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQL 174
Y P+Y F L + HPF +K+ + L + I P +++ L
Sbjct: 5 YHPDY---FLPLPEGHPFPMEKFPQAYERLKDQL-------------RIAPPMDLTRADL 48
Query: 175 LIAHTEKYLKSLKWSFN-------VAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA 227
AH YL ++ + + ++ L A P + GT+ A
Sbjct: 49 ERAHCPHYLDAVSFDDDRNHPHGLLSYDRNRLGLPANPQLLTRSTL------ETAGTVAA 102
Query: 228 GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLL-FQSKSISTAMIVDLDAHQ 286
AL G + N+ GG HHA KG GFC DI++ ++ L + +IVD DAHQ
Sbjct: 103 TLHALEHGCAANLAGGTHHAFPDKGLGFCVLNDIAVAIEYLRAHGRCPDHILIVDTDAHQ 162
Query: 287 GNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
GN F ++ +F + KE C I L + E YL+ + L +
Sbjct: 163 GNANNAYFRDDPSVFTYSIHVGKNYPAKKEPGDCDIPLPRWVESADYLDALNNSLPKIFA 222
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD++ + G D +D G + ++ + +++RD+ V ++ V + GGY +Q
Sbjct: 223 HTEPDLVFWIHGADCHHDDRFGQMRLTDEAMLQRDQTVLQLCKDYATRTVCVYGGGYNRQ 282
Query: 404 ---TARIIADSILNLADL 418
T R+ A SI AD+
Sbjct: 283 PGGTGRLHAQSIRAAADV 300
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLL-FQSKSISTAMIVD 62
GT+ A AL G + N+ GG HHA KG GFC DI++ ++ L + +IVD
Sbjct: 98 GTVAATLHALEHGCAANLAGGTHHAFPDKGLGFCVLNDIAVAIEYLRAHGRCPDHILIVD 157
Query: 63 LDAHQ 67
DAHQ
Sbjct: 158 TDAHQ 162
>gi|229592755|ref|YP_002874874.1| putative histone deacetylase family protein [Pseudomonas
fluorescens SBW25]
gi|229364621|emb|CAY52526.1| putative histone deacetylase family protein [Pseudomonas
fluorescens SBW25]
Length = 306
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 140/300 (46%), Gaps = 26/300 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F E P D ++ + ++LV++ ++ PQ
Sbjct: 2 PLPLIYHDDYSPEF-PAEHRFPMDK----------FRLLRDHLVDSGLTEDSQLLRPQLC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVP-NYFVQKCYLRPMRYHVGGTLEA 227
+ L +AH Y++ + +S E + +P N + + +R VGG++ A
Sbjct: 51 PAQILALAHDTGYIE----RYMSGELSREDQRRLGLPWNEALARRTVRA----VGGSILA 102
Query: 228 GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQG 287
AL G + ++ GG HHA GFC + D++++ L S ++ +I D D HQG
Sbjct: 103 AEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDCDVHQG 162
Query: 288 NGYEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLR 343
+G + +++T I + K A + + I L D YL+ ++ L L
Sbjct: 163 DGTAR-ILHDTPDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLKVVDDALNYLLP 221
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ G+ RDE V R +P++ + GGY K
Sbjct: 222 LYQPDLVLYDAGVDVHKDDALGYLKLTDAGVAARDESVMRHCLGRDIPVMGVIGGGYSKD 281
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ A AL G + ++ GG HHA GFC + D++++ L S ++ +I D
Sbjct: 98 GSILAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|409397154|ref|ZP_11248092.1| histone deacetylase family protein [Pseudomonas sp. Chol1]
gi|409118314|gb|EKM94714.1| histone deacetylase family protein [Pseudomonas sp. Chol1]
Length = 354
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 137/300 (45%), Gaps = 30/300 (10%)
Query: 112 PIVYRPEYNV-----HFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEP 166
P+V+ +Y+ H F +EK ++ + ++LV++ T + P
Sbjct: 4 PLVFHDDYSPPLPPGHRFPMEK----------------FRLLRDHLVDSGLTTDAALRRP 47
Query: 167 QEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLE 226
+ L +AH Y+ ++ + +E+ L +P + R +R VGG+L
Sbjct: 48 MLCRHDVLNLAHDANYVA--RYCSGDMSPAELRRL-GLP--WSPALAQRTVRA-VGGSLL 101
Query: 227 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 286
LAL+ G + ++ GG HHA GFC + D++++ L +S + +I D D HQ
Sbjct: 102 TAELALQHGLACHLAGGTHHAHRDHASGFCIFNDLAVVALYLLESGRVGRVLIFDCDVHQ 161
Query: 287 GNGYEK--DFMNETRIFIMETCITSKAKEAIRC-RIELAPYTEDQHYLEKIEAGLERSLR 343
G+G + D + + + ++A I LAP D YL ++ L L
Sbjct: 162 GDGTARILDGVADAVTVSLHCEKNFPVRKATSDWDIPLAPGLGDAEYLRIVDDTLNYLLP 221
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LGLL +S G+ RD V R +P+ L GGY K
Sbjct: 222 LYQPDLVLYDAGVDVHRDDALGLLDLSDAGLAARDSAVLEHCLGRDIPVAGLIGGGYDKD 281
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L LAL+ G + ++ GG HHA GFC + D++++ L +S + +I D
Sbjct: 98 GSLLTAELALQHGLACHLAGGTHHAHRDHASGFCIFNDLAVVALYLLESGRVGRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|321496307|gb|EAQ39532.2| deacetylase [Dokdonia donghaensis MED134]
Length = 300
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 126/303 (41%), Gaps = 29/303 (9%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PI P H F +EK ++ L K LV DN EP +V+
Sbjct: 8 PIYKHPLPEGHRFPMEK------------YDLLPKQ----LVYEGTCIADNFFEPVQVAH 51
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E +L HT +Y+ +LK + + ++ + V + + GT++ A
Sbjct: 52 EHILRCHTTEYVDNLK-ALTIDPRAQRKTGFPLSQELVDRELIITQ-----GTIDGCHYA 105
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G ++NI GG HHA G FC D ++ + L ++ +IVDLD HQGNG
Sbjct: 106 LENGIAMNIAGGTHHAYTDHGEAFCLLNDQAIAARYLQANELAKKILIVDLDVHQGNGTA 165
Query: 292 KDFMNETRIFIMETCITSKA-----KEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
+ F + +F + KA KE I L T D YL ++ L ++
Sbjct: 166 EIFAGDDSVFTFS--MHGKANYPFRKEISNLDIALETDTGDVEYLGILKKTLPNLIKEQQ 223
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
PD I Y G D+L +D LG L S G RD V + ++P+ GGY
Sbjct: 224 PDFIFYLCGVDILASDKLGKLGCSIDGCKERDRFVLQICHDLKIPVQCSMGGGYSPDIKV 283
Query: 407 IIA 409
II
Sbjct: 284 IIG 286
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++ AL G ++NI GG HHA G FC D ++ + L ++ +IVDL
Sbjct: 97 GTIDGCHYALENGIAMNIAGGTHHAYTDHGEAFCLLNDQAIAARYLQANELAKKILIVDL 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|171058674|ref|YP_001791023.1| histone deacetylase superfamily protein [Leptothrix cholodnii SP-6]
gi|170776119|gb|ACB34258.1| histone deacetylase superfamily [Leptothrix cholodnii SP-6]
Length = 318
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 98/206 (47%), Gaps = 15/206 (7%)
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLL-----FQSK 272
R VG T+ A AL G S N+ GG HHAS G GFC + D+++ +L+ + +
Sbjct: 89 RRSVGATIAAARCALAEGISGNLAGGTHHASAGGGSGFCVFNDVAVAARLMQAEWHRRHR 148
Query: 273 SISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQH 329
++DLD HQGNG F ++ ++ + K A ++L D
Sbjct: 149 QFLRIAVIDLDVHQGNGTASIFADDPMVYTLSMHGEKNFPFRKVASDHDVDLPDGCTDGP 208
Query: 330 YLEKIEAGLERSLRSFC---PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKAR 386
YL+ ++A LER + P +I Y AG D D LG L IS G+ RD V AR
Sbjct: 209 YLQALDAALERLWQHHAESPPGLIFYIAGADPHEGDRLGRLKISAAGLAERDRRVLQAAR 268
Query: 387 ERRVPIVMLTSGGYLKQTARIIADSI 412
+R VP+ + GGY R I D++
Sbjct: 269 QRGVPVAISMGGGY----GRTIEDTV 290
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLL-----FQSKSISTAM 59
T+ A AL G S N+ GG HHAS G GFC + D+++ +L+ + +
Sbjct: 95 TIAAARCALAEGISGNLAGGTHHASAGGGSGFCVFNDVAVAARLMQAEWHRRHRQFLRIA 154
Query: 60 IVDLDAHQ 67
++DLD HQ
Sbjct: 155 VIDLDVHQ 162
>gi|444426852|ref|ZP_21222255.1| hypothetical protein B878_12940 [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444239867|gb|ELU51421.1| hypothetical protein B878_12940 [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 307
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 139/301 (46%), Gaps = 17/301 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y+ L + H + K+ H L + + L + + +P +S
Sbjct: 3 PLIYHPIYSQ--LDLPEGHRYPIMKYHH----LHQAVLEKLGSEDWGGKIEFFQPTPLST 56
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+++ H+E+Y+ L V + + + + R + G L A A
Sbjct: 57 DEIKRVHSEEYVDLL-----VTGAMPAAKMRRIGFPWSEALITRTLTSTAGTVLTAE-KA 110
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G +I++ GG+HHA + G GFC + D+++ K + + + MI+D D H G+G
Sbjct: 111 LEHGIAIHLSGGYHHAHKDFGSGFCLFNDLAIAAKHMLDHEHVDKVMIIDSDVHHGDGTA 170
Query: 292 KDFMNETRIFIME-TCITSKAKEAIRCRIELAPY---TEDQHYLEKIEAGLERSLRSFCP 347
+E I + C + +++ P+ T+D+ +L + ++ ++ P
Sbjct: 171 TLCKDEGDIITLSFHCDKNFPARKPDSDLDV-PFRRDTDDETFLMTFKEVVQMAINLHRP 229
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D+++Y+AG D+ +D LG +S +GI RD + ++R +P+ + GGY + A +
Sbjct: 230 DMVIYDAGVDIHTDDELGYFNVSTEGIFERDRFLMQLMKDRGIPVAAVVGGGYRSEHADL 289
Query: 408 I 408
+
Sbjct: 290 V 290
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ AL G +I++ GG+HHA + G GFC + D+++ K + + + MI+D
Sbjct: 102 GTVLTAEKALEHGIAIHLSGGYHHAHKDFGSGFCLFNDLAIAAKHMLDHEHVDKVMIIDS 161
Query: 64 DAHQ 67
D H
Sbjct: 162 DVHH 165
>gi|332184978|ref|ZP_08386727.1| histone deacetylase domain protein [Sphingomonas sp. S17]
gi|332014702|gb|EGI56758.1| histone deacetylase domain protein [Sphingomonas sp. S17]
Length = 307
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 93/184 (50%), Gaps = 7/184 (3%)
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 281
GGT A LAL G++ N GG HHA G G+C + D+++ L + +S IVD
Sbjct: 94 GGTWTAAMLALEHGFAANTAGGSHHALADTGAGYCVFNDLAVAAVRLVEEGIVSRIAIVD 153
Query: 282 LDAHQGNGYEKDFMNETRIFIMETCITSKAK-EAIRCR----IELAPYTEDQHYLEKIEA 336
D HQG+G + R I+ I ++ A + R + L+ +D YLE++E
Sbjct: 154 CDVHQGDGTAA--LTAGRADIVTYSIHAEKNFPARKARSTLDVGLSDGVDDDGYLERLET 211
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
L L P++I+Y AG D D LG LA+S +G++ RD L+ A R +P+
Sbjct: 212 TLVPFLEEHTPELILYQAGVDPFAGDRLGRLAVSEEGLVARDRLIADLALARSLPLASTV 271
Query: 397 SGGY 400
GGY
Sbjct: 272 GGGY 275
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A LAL G++ N GG HHA G G+C + D+++ L + +S IVD
Sbjct: 95 GTWTAAMLALEHGFAANTAGGSHHALADTGAGYCVFNDLAVAAVRLVEEGIVSRIAIVDC 154
Query: 64 DAHQ 67
D HQ
Sbjct: 155 DVHQ 158
>gi|421888007|ref|ZP_16319126.1| Histone deacetylase [Ralstonia solanacearum K60-1]
gi|378966642|emb|CCF95874.1| Histone deacetylase [Ralstonia solanacearum K60-1]
Length = 324
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 111/246 (45%), Gaps = 15/246 (6%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHV 221
+ E ++ LL+AH Y+ ++ + A E+ + + R
Sbjct: 42 LYEAPRAGDDALLLAHAPDYVHAVGAGKLDPARQREI-------GFPWSPAMVERSRRSA 94
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS----TA 277
G T+ A A+ G ++N+ GG HHA KGGGFC + D ++ + + + +
Sbjct: 95 GATMAACEAAMADGIAVNLAGGTHHAYADKGGGFCVFNDAAIASRWMQRRPGRAQEDFPV 154
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
IVDLD HQGNG ++ +F + KEA + L D YLE +
Sbjct: 155 AIVDLDVHQGNGTASILRDDASVFTLSLHGEKNYPFRKEASDLDVGLPDGCGDAAYLEAL 214
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
L+ F P +I+Y AG D D LG L ++ G+ RRD+ VF A +R+PI +
Sbjct: 215 AGALDTLAARFAPRLIIYLAGADPHEGDRLGRLKLTMDGLARRDQQVFDFAFLQRIPIAI 274
Query: 395 LTSGGY 400
+GGY
Sbjct: 275 TMAGGY 280
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS----TAMI 60
T+ A A+ G ++N+ GG HHA KGGGFC + D ++ + + + + I
Sbjct: 97 TMAACEAAMADGIAVNLAGGTHHAYADKGGGFCVFNDAAIASRWMQRRPGRAQEDFPVAI 156
Query: 61 VDLDAHQ 67
VDLD HQ
Sbjct: 157 VDLDVHQ 163
>gi|343503019|ref|ZP_08740854.1| histone deacetylase/AcuC/AphA family protein [Vibrio tubiashii ATCC
19109]
gi|418480546|ref|ZP_13049603.1| histone deacetylase/AcuC/AphA family protein [Vibrio tubiashii
NCIMB 1337 = ATCC 19106]
gi|342812689|gb|EGU47681.1| histone deacetylase/AcuC/AphA family protein [Vibrio tubiashii ATCC
19109]
gi|384571835|gb|EIF02364.1| histone deacetylase/AcuC/AphA family protein [Vibrio tubiashii
NCIMB 1337 = ATCC 19106]
Length = 307
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 127/281 (45%), Gaps = 23/281 (8%)
Query: 132 FDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFN 191
F++ + + N +W+ F Y ++P V + ++ H Y++ L S
Sbjct: 30 FEAIEQQRAVNPVWQQAFQY------------VQPAPVDQVEVSQVHCPDYIQLLT-SGE 76
Query: 192 VAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETK 251
+ A P + + + + GGT E A++ G +I++ GG+HHA
Sbjct: 77 LPA-----PKMRRIGFPWSETLITRTLTSAGGTCETVHQAVKHGVAIHLSGGYHHAHRDF 131
Query: 252 GGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRI----FIMETCI 307
G GFC D+ L K + I +IVD D H G+G E I F E
Sbjct: 132 GSGFCLVNDLVLAAKRALTFEGIDKVLIVDSDVHHGDGTATLCEEEDAIVTLSFHCEKNF 191
Query: 308 TSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLL 367
++ ++ + L T D +LE + +E ++ PD+I+Y+AG D+ +D LG L
Sbjct: 192 PARKPDS-DLDVPLGRDTGDAEFLEAFTSVVEMAVNLHQPDLILYDAGVDIHEDDELGYL 250
Query: 368 AISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
+IS I RD +F AR++++PI + GGY + ++
Sbjct: 251 SISSDAIYTRDVFMFQLARKKQLPIACVVGGGYCTEHQALV 291
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT E A++ G +I++ GG+HHA G GFC D+ L K + I +IVD
Sbjct: 103 GTCETVHQAVKHGVAIHLSGGYHHAHRDFGSGFCLVNDLVLAAKRALTFEGIDKVLIVDS 162
Query: 64 DAHQ 67
D H
Sbjct: 163 DVHH 166
>gi|325282956|ref|YP_004255497.1| Histone deacetylase [Deinococcus proteolyticus MRP]
gi|324314765|gb|ADY25880.1| Histone deacetylase [Deinococcus proteolyticus MRP]
Length = 307
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 92/194 (47%), Gaps = 4/194 (2%)
Query: 210 QKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF 269
++ +R MR GG+L A A GW N+ GG HHA + GGFC D ++L +L
Sbjct: 92 EEVVVRAMRA-AGGSLAALHDARAVGWGANLAGGTHHAFADRAGGFCLVNDAAILTRLAL 150
Query: 270 QSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTE 326
++DLD HQG+G +E R F + KE + L
Sbjct: 151 DEGWAQRVAVLDLDVHQGDGTAALLEHEPRAFTLSIHGERNYPFRKERSSLDLGLGDGVT 210
Query: 327 DQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKAR 386
D YL + +L +F PD+++Y AG DVL D G A++ G+ R+ V AR
Sbjct: 211 DAEYLTVLRTQALPALEAFRPDLLLYLAGADVLAGDRFGRFALTLDGVHERNRRVLTWAR 270
Query: 387 ERRVPIVMLTSGGY 400
+ VP+V + +GGY
Sbjct: 271 DAGVPVVSMMAGGY 284
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A A GW N+ GG HHA + GGFC D ++L +L ++DL
Sbjct: 104 GSLAALHDARAVGWGANLAGGTHHAFADRAGGFCLVNDAAILTRLALDEGWAQRVAVLDL 163
Query: 64 DAHQFSDY-----YFPSAH--SIKRKRKVEFLKERKALE 95
D HQ + P A SI +R F KER +L+
Sbjct: 164 DVHQGDGTAALLEHEPRAFTLSIHGERNYPFRKERSSLD 202
>gi|319785544|ref|YP_004145020.1| histone deacetylase [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317171432|gb|ADV14970.1| Histone deacetylase [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 301
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 92/183 (50%), Gaps = 3/183 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
GGT+ A LALR G + N GG HHA +G GFC + D+++ +L + +IV
Sbjct: 96 TGGTVLAARLALRHGIACNTAGGSHHARRAQGAGFCTFNDVAVAALVLLAEGAARNILIV 155
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAG 337
DLD HQG+G ++ R+F K A + L T D YLE++ A
Sbjct: 156 DLDVHQGDGTADILADDPRVFTFSMHGDRNYPVRKIASDLDVALPDGTGDAAYLERLAAI 215
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L DI+ YNAG DV +D LG L++S G+ RD++V R + VP+ +
Sbjct: 216 LPELSAQAHWDIVFYNAGVDVHADDRLGRLSLSDDGLRARDDMVISHFRAQGVPVCGVIG 275
Query: 398 GGY 400
GGY
Sbjct: 276 GGY 278
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LALR G + N GG HHA +G GFC + D+++ +L + +IVDL
Sbjct: 98 GTVLAARLALRHGIACNTAGGSHHARRAQGAGFCTFNDVAVAALVLLAEGAARNILIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|226943137|ref|YP_002798210.1| histone deacetylase superfamily protein [Azotobacter vinelandii DJ]
gi|226718064|gb|ACO77235.1| histone deacetylase superfamily [Azotobacter vinelandii DJ]
Length = 316
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 138/301 (45%), Gaps = 24/301 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY EY+ F H F +K++ + ++L V++ + + P+
Sbjct: 14 PLVYHDEYSPSF---PDGHRFPMEKFRLLRDHL--------VDSGLTSDAELRRPEPCPT 62
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+ L +AH Y++ + A+S E + +P R VGG+L A L
Sbjct: 63 DILALAHDPAYIER----YCSGALSREELRRLGLP---WTPALARRTVLAVGGSLLAAEL 115
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G + ++ GG HHA GFC + D++++ + L S + +I D D HQG+G
Sbjct: 116 ALEHGLACHLAGGTHHAHHDHPSGFCIFNDLAVVSRYLLASGRVGRVLIFDCDVHQGDGT 175
Query: 291 EKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFC 346
+ + +T I + + A + R I L D YL+ ++ L L +
Sbjct: 176 AR-ILEDTPEAITVSLHCEQNFPARKARSDWDIGLPRGMGDADYLKVVDDALNYLLPLYQ 234
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
PD+++Y+AG DV +D LG LA+S G+ RD V R + ++ + GGY + A
Sbjct: 235 PDLVLYDAGVDVHQDDALGYLALSDAGLAARDGAVLRHCLARGIAVLGVIGGGYDRDRAA 294
Query: 407 I 407
+
Sbjct: 295 L 295
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A LAL G + ++ GG HHA GFC + D++++ + L S + +I D
Sbjct: 108 GSLLAAELALEHGLACHLAGGTHHAHHDHPSGFCIFNDLAVVSRYLLASGRVGRVLIFDC 167
Query: 64 DAHQ 67
D HQ
Sbjct: 168 DVHQ 171
>gi|302841815|ref|XP_002952452.1| hypothetical protein VOLCADRAFT_105500 [Volvox carteri f.
nagariensis]
gi|300262388|gb|EFJ46595.1| hypothetical protein VOLCADRAFT_105500 [Volvox carteri f.
nagariensis]
Length = 292
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 114/262 (43%), Gaps = 28/262 (10%)
Query: 144 LWKHIFNYLVEAKFITQDNIIEPQEV-SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLV 202
+++ I+ ++E T I P + S E+L + H +Y+
Sbjct: 26 IFRRIYEQILEQGIATPAQIHSPPRLPSYEELHLVHDPEYV------------------- 66
Query: 203 AVPNYFVQKCYLRPMRYH-VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADI 261
+ C L R +G A + G ++N GG HHA G G+C D+
Sbjct: 67 ----HLFSTCQLDDERVRRIGFGTAATRSPVMHGLAVNTAGGTHHAFPAHGSGYCILNDL 122
Query: 262 SLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCR 318
++ ++L + +I+DLD HQG+G F + +F + +S K+
Sbjct: 123 AVTTEVLLAEGLVRRVLILDLDVHQGDGTAFIFRDRPDVFTLSVHSSSNFPTRKQRSTLD 182
Query: 319 IELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRD 378
+ L T D YL ++ L R LR F PDI++Y+AG D D LG LA+S +G+ RR+
Sbjct: 183 VALPDGTPDGPYLARVGDLLPRVLRDFAPDIVLYDAGVDPHAADALGRLALSDEGLARRE 242
Query: 379 ELVFMKARERRVPIVMLTSGGY 400
LV VP+ GGY
Sbjct: 243 RLVLDTCLGFDVPVAGYVGGGY 264
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 16 GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
G ++N GG HHA G G+C D+++ ++L + +I+DLD HQ
Sbjct: 96 GLAVNTAGGTHHAFPAHGSGYCILNDLAVTTEVLLAEGLVRRVLILDLDVHQ 147
>gi|410094348|ref|ZP_11290785.1| histone deacetylase superfamily protein [Pseudomonas viridiflava
UASWS0038]
gi|409758219|gb|EKN43550.1| histone deacetylase superfamily protein [Pseudomonas viridiflava
UASWS0038]
Length = 305
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 138/296 (46%), Gaps = 22/296 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y +Y+ F P D + F L H L+++ ++ P+
Sbjct: 4 PLIYHDDYSPEF-------PADHRFPMDKFRLLRDH----LIDSGLTRDVQLLRPELCPA 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ L +AH Y+ S S +++ E + +P + + R +R VGG+L A
Sbjct: 53 DILALAHDPSYI-SRYLSGDLS--REDQRRLGLP--WSEALARRTIRA-VGGSLLTAEQA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G + ++ GG HHA GFC + D++++ + L QS + +I D D HQG+G
Sbjct: 107 LDHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQGDGTA 166
Query: 292 KDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ + +T I + K A + + I L D YL+ ++ L L + P
Sbjct: 167 R-ILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDSDYLKVVDDLLNYLLPIYKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
D+++Y+AG DV +D LG L ++ QG+ RDE V R +P++ + GGY K
Sbjct: 226 DLVLYDAGVDVHKDDALGYLKLTDQGLADRDEAVLRHCLGRDIPVMGVIGGGYSKD 281
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L AL G + ++ GG HHA GFC + D++++ + L QS + +I D
Sbjct: 98 GSLLTAEQALDHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|451975732|ref|ZP_21926914.1| histone deacetylase family, putative [Vibrio alginolyticus E0666]
gi|451930317|gb|EMD78029.1| histone deacetylase family, putative [Vibrio alginolyticus E0666]
Length = 307
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 138/300 (46%), Gaps = 15/300 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P +Y P Y+ +L + H + K++ YL++ I ++ + + +P+ ++
Sbjct: 3 PFIYHPVYSQ--LELPEGHRYPIMKYQ----YLYESILVHMEKDDWKEHVQFFQPEALTV 56
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E++ H +KY+ L N + + P + + R + G L A A
Sbjct: 57 EEVKRVHDQKYVDLL---VNGNMPAAKMRRIGFP--WSESLITRTLTSAAGTALTAN-KA 110
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G +I++ GG+HHA + G GFC + D+ + + + + + +I+D D H G+G
Sbjct: 111 LEYGVAIHLSGGYHHAHKEFGSGFCLFNDLVIAARQALEVEHVDKVLIIDSDVHHGDGTA 170
Query: 292 KDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
+E I + C + K + L T D+ +L + +E ++ PD
Sbjct: 171 TLCDDEPDIITLSFHCDKNFPARKPQSDLDVPLVRGTGDEDFLMAFKEVVEMAINLHRPD 230
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
+++Y+AG D+ +D LG +S QGI+ RD + + R +P+ + GGY A ++
Sbjct: 231 LVIYDAGVDIHQDDELGYFDVSTQGILERDRFLMQTMKSRGIPVAAVVGGGYRTNHADLV 290
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT AL G +I++ GG+HHA + G GFC + D+ + + + + + +I+D
Sbjct: 102 GTALTANKALEYGVAIHLSGGYHHAHKEFGSGFCLFNDLVIAARQALEVEHVDKVLIIDS 161
Query: 64 DAHQ 67
D H
Sbjct: 162 DVHH 165
>gi|256425815|ref|YP_003126468.1| histone deacetylase superfamily protein [Chitinophaga pinensis DSM
2588]
gi|256040723|gb|ACU64267.1| histone deacetylase superfamily [Chitinophaga pinensis DSM 2588]
Length = 299
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 109/260 (41%), Gaps = 9/260 (3%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQK 211
L+ I++ + P E +L+ HT Y + L+ L P +++
Sbjct: 31 LLREGIISEQQLHIPAPAEESTILLTHTAHYWQQLQHQTLSDKEQRRIGLPQSPALTLRE 90
Query: 212 CYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS 271
+ GT++ A+ G ++N+ GG HHA +G GFC D ++ L
Sbjct: 91 IVISQ------GTIDCALHAMEHGVALNVAGGTHHAFADRGEGFCLLNDFAIAANYLLHQ 144
Query: 272 KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQ 328
+ + +I+DLD HQGNG F ++ KE + L D
Sbjct: 145 QLVKKVLIIDLDVHQGNGTAALFEGRPEVYTFSMHGAHNYPFHKEVSDWDVPLPDGMNDV 204
Query: 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER 388
YL + L + PDI+ Y +G D+L D G L ++ +G +RDE+VF ++
Sbjct: 205 DYLRTLGECLPVLINKVKPDIVFYLSGVDILQTDRYGKLQVTHEGCRKRDEMVFHTLKQH 264
Query: 389 RVPIVMLTSGGYLKQTARII 408
+P + GGY Q I+
Sbjct: 265 GIPCTVAMGGGYSTQIRDIV 284
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT++ A+ G ++N+ GG HHA +G GFC D ++ L + + +I+DL
Sbjct: 96 GTIDCALHAMEHGVALNVAGGTHHAFADRGEGFCLLNDFAIAANYLLHQQLVKKVLIIDL 155
Query: 64 DAHQ 67
D HQ
Sbjct: 156 DVHQ 159
>gi|94498520|ref|ZP_01305076.1| hypothetical protein SKA58_04476 [Sphingomonas sp. SKA58]
gi|94422063|gb|EAT07108.1| hypothetical protein SKA58_04476 [Sphingomonas sp. SKA58]
Length = 301
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 95/203 (46%), Gaps = 10/203 (4%)
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 281
GGT A LA G++ N GG HHA G G+C + D+++ L +I+D
Sbjct: 98 GGTWAAARLAKIHGYAANAAGGSHHALHDTGAGYCVFNDLAIAATRLIAEGDAKHILILD 157
Query: 282 LDAHQGNGYEKDFMNETRIFIMETCI-----TSKAKEAIRCRIELAPYTEDQHYLEKIEA 336
LD HQG+G T +F + KA+ ++ +E +D Y+ +
Sbjct: 158 LDVHQGDGTAALMAGRTDVFTLSIHAERNFPVRKARSSLDIGLEDG--IDDHGYMAVLTY 215
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
L R L F PD+I+Y AG D D LG L ++ G+ RD V +AR+R +P+
Sbjct: 216 ALPRVLDDFAPDLILYQAGVDPHGEDRLGRLELTDAGLDARDRFVLRQARKRTIPVASTM 275
Query: 397 SGGYLKQ---TARIIADSILNLA 416
GGY AR AD ++ +A
Sbjct: 276 GGGYGANRMLIARRHADCMIRMA 298
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 17/125 (13%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A LA G++ N GG HHA G G+C + D+++ L +I+DL
Sbjct: 99 GTWAAARLAKIHGYAANAAGGSHHALHDTGAGYCVFNDLAIAATRLIAEGDAKHILILDL 158
Query: 64 DAHQF----------SDYYFPSAHSIKRKRKVEFLKERKA----LEDEITSEPQESVVTR 109
D HQ +D + S H+ +R K R + LED I +V+T
Sbjct: 159 DVHQGDGTAALMAGRTDVFTLSIHA---ERNFPVRKARSSLDIGLEDGIDDHGYMAVLTY 215
Query: 110 PWPIV 114
P V
Sbjct: 216 ALPRV 220
>gi|410941483|ref|ZP_11373280.1| histone deacetylase family protein [Leptospira noguchii str.
2006001870]
gi|410783432|gb|EKR72426.1| histone deacetylase family protein [Leptospira noguchii str.
2006001870]
Length = 271
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 115/246 (46%), Gaps = 14/246 (5%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
I +P + L + HT+++L F I+E +P + K + VG
Sbjct: 17 IYKPDLAKTKDLSLVHTQEFLDD----FFSLKITEKTQYSELP---LTKQIVHSFVLAVG 69
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
GT+ + L + + +IGGGFHH+ + GFC D ++ KL + + +DL
Sbjct: 70 GTILSMELTQKYKFIYHIGGGFHHSMPDRAEGFCYLNDAAIASKLYQKEHPGKKILFIDL 129
Query: 283 DAHQGNGYEKDFMNETRIFI--METCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLER 340
D HQGNG F ++ +F M KE + L TED+ YLE +E L +
Sbjct: 130 DLHQGNGNSFVFQDDPDVFTFSMHQEDLYPKKEKSDLDVPLKEGTEDKEYLELLEKSLRK 189
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV---FMKARERRVPIVMLTS 397
F PD+I Y AG D D LG L ++ QG+ +RD++V + RV V+L +
Sbjct: 190 IESDFKPDLIFYIAGADPFEGDSLGDLKLTFQGLRKRDQIVKDFVCSLNDTRV--VILPA 247
Query: 398 GGYLKQ 403
GGY K
Sbjct: 248 GGYAKD 253
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ + L + + +IGGGFHH+ + GFC D ++ KL + + +DL
Sbjct: 70 GTILSMELTQKYKFIYHIGGGFHHSMPDRAEGFCYLNDAAIASKLYQKEHPGKKILFIDL 129
Query: 64 DAHQ 67
D HQ
Sbjct: 130 DLHQ 133
>gi|407070923|ref|ZP_11101761.1| histone deacetylase/AcuC/AphA family protein [Vibrio cyclitrophicus
ZF14]
Length = 306
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 139/302 (46%), Gaps = 18/302 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI--TQDNIIEPQEV 169
P++Y P Y+ L + H + K++ L L+++ + +Q + +P V
Sbjct: 3 PLIYHPIYSQ--LPLPEGHRYPINKYQ-----LLHGAVEALMDSDPLWKSQFEVFQPMPV 55
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
S EQ+ H +Y+ L S N+ A + + + ++ R + Y GGT A
Sbjct: 56 SVEQVKQVHDSEYV-DLLISGNLPAAK----MRRIGFPWSEQLIERTL-YSSGGTCLAAE 109
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
+A+ G++I++ GG+HHA G GFC D+ L K + I +IVD D H G+G
Sbjct: 110 MAIESGFAIHLSGGYHHAHHDFGSGFCLLNDLVLAAKHALTFEHIDKVLIVDSDVHHGDG 169
Query: 290 YEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
I + C + K + L+ T D+ +L E + ++
Sbjct: 170 TATLCQENDDIITLSFHCDKNFPARKPLSDLDVPLSRETGDEEFLRCFEQVTKLAIAHHQ 229
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
PD+IVY+AG D+ +D LG L +S QGI RD L+ A+ +P+ + GGY Q
Sbjct: 230 PDLIVYDAGIDIHQDDELGYLNVSTQGIFERDCLMVSLAKLESIPMACVVGGGYRTQHQD 289
Query: 407 II 408
++
Sbjct: 290 LV 291
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A +A+ G++I++ GG+HHA G GFC D+ L K + I +IVD
Sbjct: 103 GTCLAAEMAIESGFAIHLSGGYHHAHHDFGSGFCLLNDLVLAAKHALTFEHIDKVLIVDS 162
Query: 64 DAHQ 67
D H
Sbjct: 163 DVHH 166
>gi|84393623|ref|ZP_00992375.1| histone deacetylase/AcuC/AphA family protein [Vibrio splendidus
12B01]
gi|84375764|gb|EAP92659.1| histone deacetylase/AcuC/AphA family protein [Vibrio splendidus
12B01]
Length = 326
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 137/309 (44%), Gaps = 32/309 (10%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIF---------NYLWKHIFNYLVEAKFITQDN 162
P++Y P Y+ L + H + K++ + + LWK +Q
Sbjct: 3 PLIYHPIYSQ--LPLPEGHRYPINKYQLLHSAVEALMDRDPLWK------------SQFE 48
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
+ +P VS EQ+ H +Y+ L S N+ A + + + ++ R + Y G
Sbjct: 49 MFQPTPVSVEQVKQVHDSEYV-DLLVSGNLPAAK----MRRIGFPWSEQLIERTL-YSSG 102
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
GT A +A+ G +I++ GG+HHA G GFC D+ L K + I +IVD
Sbjct: 103 GTCLAAEMAIESGLTIHLSGGYHHAHHDFGSGFCLLNDLVLAAKHALTFEHIDKVLIVDS 162
Query: 283 DAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLE 339
D H G+G I + C + K + L+ TED+ +L E +
Sbjct: 163 DVHHGDGTATLCQENDDIITLSFHCDKNFPARKPLSDLDVPLSRETEDEEFLRCFEQVTK 222
Query: 340 RSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGG 399
++ PD+I+Y+AG D+ +D LG L +S QGI RD + A+ +P+ + GG
Sbjct: 223 LAIAHHQPDLIIYDAGIDIHQDDELGYLNVSTQGIFERDCFMIELAKSESIPMACVVGGG 282
Query: 400 YLKQTARII 408
Y Q ++
Sbjct: 283 YRTQHQDLV 291
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A +A+ G +I++ GG+HHA G GFC D+ L K + I +IVD
Sbjct: 103 GTCLAAEMAIESGLTIHLSGGYHHAHHDFGSGFCLLNDLVLAAKHALTFEHIDKVLIVDS 162
Query: 64 DAHQ 67
D H
Sbjct: 163 DVHH 166
>gi|350531992|ref|ZP_08910933.1| hypothetical protein VrotD_12733 [Vibrio rotiferianus DAT722]
Length = 317
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 138/301 (45%), Gaps = 17/301 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y+ +L + H + K+ +YL++ + L + Q +P +S
Sbjct: 3 PLIYHPIYSQ--LELAEGHRYPIMKY----HYLYQAVVEKLAIKGWGEQIEFFQPNPLSV 56
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ + H+ +Y+ L V + + + + R + G L A +A
Sbjct: 57 DDIKRVHSGEYVDLL-----VTGSMPAVKMRRIGFPWSEALIARTLTSTAGTVLTAE-MA 110
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G +I++ GG+HHA + G GFC + D+++ + I MI+D D H G+G
Sbjct: 111 LEHGVAIHLSGGYHHAHKDFGSGFCLFNDLAIAATHMLDHDHIDKVMIIDSDVHHGDGTA 170
Query: 292 KDFMNETRI----FIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+E I F + ++ E+ + L+ T D+ +L + +E ++ P
Sbjct: 171 TLCEDEPDIITLSFHCDKNFPARKPES-DLDVPLSRDTSDETFLMTFKEVVEMAINLHRP 229
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D+++Y+AG D+ +D LG +S +GI RD + +++ +P+ + GGY A +
Sbjct: 230 DMVIYDAGVDIHTDDELGYFDVSTEGIFERDRFLMQLMKDKGIPVAAVVGGGYRSDHADL 289
Query: 408 I 408
+
Sbjct: 290 V 290
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ +AL G +I++ GG+HHA + G GFC + D+++ + I MI+D
Sbjct: 102 GTVLTAEMALEHGVAIHLSGGYHHAHKDFGSGFCLFNDLAIAATHMLDHDHIDKVMIIDS 161
Query: 64 DAHQ 67
D H
Sbjct: 162 DVHH 165
>gi|153833853|ref|ZP_01986520.1| histone deacetylase/AcuC/AphA family protein [Vibrio harveyi HY01]
gi|148869795|gb|EDL68769.1| histone deacetylase/AcuC/AphA family protein [Vibrio harveyi HY01]
Length = 307
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 136/300 (45%), Gaps = 15/300 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y+ L + H + K+ H L + + L + + +P +S
Sbjct: 3 PLIYHPIYSQ--LDLPEGHRYPIMKYHH----LHQAVVEKLGSEDWGGKIEFFQPTPLST 56
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+++ H E+Y+ L V + + + + R + G L A A
Sbjct: 57 DEIKRVHCEEYVDLL-----VTGAMPAAKMRRIGFPWSEALITRTLTSTAGTVLTAE-KA 110
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G +I++ GG+HHA + G GFC + D+++ K + + + MI+D D H G+G
Sbjct: 111 LEHGIAIHLSGGYHHAHKDFGSGFCLFNDLAIAAKHMLDHEHVDKVMIIDSDVHHGDGTA 170
Query: 292 KDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
+E I + C + K + L T+D+ +L + ++ ++ PD
Sbjct: 171 TLCKDEADIITLSFHCDKNFPARKPDSDLDVPLRRDTDDETFLMTFKEVVQMAINLHRPD 230
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
+++Y+AG D+ +D LG +S +GI RD + ++R +P+ + GGY + A ++
Sbjct: 231 MVIYDAGVDIHTDDELGYFNVSTKGIFERDRFLMQLMKDRGIPVAAVVGGGYRSEHADLV 290
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ AL G +I++ GG+HHA + G GFC + D+++ K + + + MI+D
Sbjct: 102 GTVLTAEKALEHGIAIHLSGGYHHAHKDFGSGFCLFNDLAIAAKHMLDHEHVDKVMIIDS 161
Query: 64 DAHQ 67
D H
Sbjct: 162 DVHH 165
>gi|17546325|ref|NP_519727.1| hypothetical protein RSc1606 [Ralstonia solanacearum GMI1000]
gi|17428622|emb|CAD15308.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000]
Length = 323
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 108/243 (44%), Gaps = 13/243 (5%)
Query: 165 EPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGT 224
E ++ LL+AH Y+ ++ A P V++ R G T
Sbjct: 44 EAPRAGDDALLLAHAPDYVSAVGAGRLDPARQREIGFPWSPE-MVERS-----RRSAGAT 97
Query: 225 LEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST----AMIV 280
+ A A+ G ++N+ GG HHA KGGGFC + D ++ + + + + IV
Sbjct: 98 MAACEAAMADGIAVNLAGGTHHAYADKGGGFCVFNDAAIASRWMQRRPGRTPEHFPVAIV 157
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAG 337
DLD HQGNG ++ +F + KEA + L D YLE +
Sbjct: 158 DLDVHQGNGTASILRDDASVFTLSEHGEKNYPFRKEASDLDVGLPDGCGDAAYLEALAGA 217
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L+ F P +I+Y AG D D LG L ++ G+ RRD VF A RR+PI + +
Sbjct: 218 LDTLAARFAPRLIIYLAGADPHEGDRLGRLRLTMDGLARRDRQVFDFAFLRRIPIAVTMA 277
Query: 398 GGY 400
GGY
Sbjct: 278 GGY 280
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS----TAMI 60
T+ A A+ G ++N+ GG HHA KGGGFC + D ++ + + + + I
Sbjct: 97 TMAACEAAMADGIAVNLAGGTHHAYADKGGGFCVFNDAAIASRWMQRRPGRTPEHFPVAI 156
Query: 61 VDLDAHQ 67
VDLD HQ
Sbjct: 157 VDLDVHQ 163
>gi|114563800|ref|YP_751313.1| histone deacetylase superfamily protein [Shewanella frigidimarina
NCIMB 400]
gi|114335093|gb|ABI72475.1| histone deacetylase superfamily [Shewanella frigidimarina NCIMB
400]
Length = 307
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 131/299 (43%), Gaps = 19/299 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P VY Y+ L H F + K+ +++ + K + + + P +S+
Sbjct: 6 PFVYHASYSQ--LALPSTHRFPTTKYHNLYQHALKQ--------QLLFEQYRHTPTPISK 55
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ L H +Y++ N A + + P + Q+ R + + V GT LA
Sbjct: 56 DTLYTVHCPQYVEQF---INGALDHKAQRRIGFP--WSQELVTRTL-HAVNGTRLCAELA 109
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G ++++ GG+HHA G GFC + D+ + + S +I D D HQG+G
Sbjct: 110 LDHGIAVHLTGGYHHAHYDFGSGFCIFNDLVIAARSAIDSGRADKVLIFDCDVHQGDGTA 169
Query: 292 KDFMNETRIFIMET-CITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
I C + K+ I L D+ YLE I+ L +R PD
Sbjct: 170 TLTQGNPDIISCSIHCAQNFPSRKQQSDHDIALDKGCTDKQYLEHIQQILPYLIRIHQPD 229
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
+I+Y+AG D+ +D LG +IS GI+ RD+ V A+ +P+ + GGY + A +
Sbjct: 230 LIIYDAGVDIHQHDDLGYFSISNLGILARDKQVISIAKMHGIPLAAVIGGGYSRSEAEL 288
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LAL G ++++ GG+HHA G GFC + D+ + + S +I D
Sbjct: 101 GTRLCAELALDHGIAVHLTGGYHHAHYDFGSGFCIFNDLVIAARSAIDSGRADKVLIFDC 160
Query: 64 DAHQ 67
D HQ
Sbjct: 161 DVHQ 164
>gi|392549858|ref|ZP_10296995.1| histone deacetylase [Pseudoalteromonas spongiae UST010723-006]
Length = 302
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 123/301 (40%), Gaps = 24/301 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ F ++ H F K+ ++ YL +I Q N+ +P
Sbjct: 7 PLVYHPNYS---FSFDEKHRFVMSKFARLYQYL--------DSKGYINQRNLYQPPVGDF 55
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGF 229
+ + + H E Y+ L F+ S+ + +P + + + P+ GT A
Sbjct: 56 KPMELVHCESYVHDL---FHNQLDSKAMRRIGLPWSEQLMARTFTAPL-----GTHLAAE 107
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
LAL G + ++ GG HHA G G+C D++ L +I D D HQG+G
Sbjct: 108 LALEHGIACHLAGGTHHAHYDFGSGYCMVNDLAYTATRLINEGKARNVLIFDCDVHQGDG 167
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
+ +F K+ I L D YL + +
Sbjct: 168 TAAMLAHNPYVFTCSIHCEKNFPFRKQHSDLDIGLEIGLTDPDYLNIVSTTFNDLIEQLN 227
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
P +++Y+AG D+ D LG L IS QGI RD V + + VP+ + GGY K R
Sbjct: 228 PSLVLYDAGVDIWQQDTLGKLDISWQGIAARDYAVLEICQRKGVPVATVIGGGYDKDHQR 287
Query: 407 I 407
+
Sbjct: 288 L 288
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A LAL G + ++ GG HHA G G+C D++ L +I D
Sbjct: 101 GTHLAAELALEHGIACHLAGGTHHAHYDFGSGYCMVNDLAYTATRLINEGKARNVLIFDC 160
Query: 64 DAHQFSDYYFPSAH-------SIKRKRKVEFLKERKALE 95
D HQ AH SI ++ F K+ L+
Sbjct: 161 DVHQGDGTAAMLAHNPYVFTCSIHCEKNFPFRKQHSDLD 199
>gi|28871794|ref|NP_794413.1| histone deacetylase family protein [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28855046|gb|AAO58108.1| histone deacetylase family protein [Pseudomonas syringae pv. tomato
str. DC3000]
Length = 305
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 140/296 (47%), Gaps = 22/296 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y +Y+ F + + P D ++ + +YLV++ ++ P+
Sbjct: 4 PLIYHDDYSPAFAQDHRF-PMDK----------FRLLRDYLVDSGLTRDVQLMRPELCPV 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ L +AH Y+ S S +++ E + +P + + R +R VGG+L A
Sbjct: 53 DILALAHDPSYI-SRYLSGDLS--REDQRRLGLP--WSEALARRTIRA-VGGSLLTAEQA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G + ++ GG HHA GFC + D++++ + L QS + +I D D HQG+G
Sbjct: 107 LTHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVGKVLIFDCDVHQGDGTA 166
Query: 292 KDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ + +T I + K A + + I L D YL ++ L L + P
Sbjct: 167 R-ILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVVDDLLNYLLPFYKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
D+++Y+AG DV +D LG L ++ +G+ RDE V R +P++ + GGY K
Sbjct: 226 DLVLYDAGVDVHKDDALGYLQLTDRGLANRDEAVLRHCLGRDIPVMAVIGGGYSKD 281
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L AL G + ++ GG HHA GFC + D++++ + L QS + +I D
Sbjct: 98 GSLLTAEQALTHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVGKVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|442610968|ref|ZP_21025674.1| Histone deacetylase/AcuC/AphA family protein [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
gi|441746896|emb|CCQ11736.1| Histone deacetylase/AcuC/AphA family protein [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
Length = 301
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 88/193 (45%), Gaps = 9/193 (4%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
+ TL A ALR G +N+ GG+HHA + G GFC + D +++ L T +I
Sbjct: 93 LNNTLLAAKHALRHGIGVNLSGGYHHAQKNLGAGFCIFNDFAVVAHTLIHLGLADTVLIF 152
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCR------IELAPYTEDQHYLEKI 334
D D H G+G I TC + R + L T+D Y+E +
Sbjct: 153 DCDVHHGDGTATLCQENQNII---TCSIHCEQNFPRIKPNSDYDFPLPVGTQDSTYIETV 209
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
+ LE R PDI++YNAG D+ D LG IS G+ RD V ++ P+V
Sbjct: 210 QQALELCFRLHKPDIVLYNAGADIYCKDELGHFDISLAGVRTRDSKVLNYCLTKKTPVVA 269
Query: 395 LTSGGYLKQTARI 407
GGY + + ++
Sbjct: 270 TLGGGYQRNSHQL 282
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
TL A ALR G +N+ GG+HHA + G GFC + D +++ L T +I D
Sbjct: 95 NTLLAAKHALRHGIGVNLSGGYHHAQKNLGAGFCIFNDFAVVAHTLIHLGLADTVLIFDC 154
Query: 64 DAHQ 67
D H
Sbjct: 155 DVHH 158
>gi|152996916|ref|YP_001341751.1| histone deacetylase superfamily protein [Marinomonas sp. MWYL1]
gi|150837840|gb|ABR71816.1| histone deacetylase superfamily [Marinomonas sp. MWYL1]
Length = 308
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 140/302 (46%), Gaps = 26/302 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+V+ P Y++ F H F +K F L + L E +T +N P +S
Sbjct: 7 PLVFHPNYSIPF---PAGHRFPMRK----FGLLAES----LREQGILTDENEYTPAPLSL 55
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAG 228
+ L+ AH ++Y++ ++ + E+ +P + V+ R +R V GT+
Sbjct: 56 KVLMAAHHKEYVQRFIRGELSKREEKEI----GLPWSEWLVE----RTLRA-VSGTMLTT 106
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
LA G + ++ GG HHA + G GFC + D+++ + S +I+D D HQG+
Sbjct: 107 ELAFEHGLACHLAGGTHHAHPSHGSGFCIFNDLAVAALAMIGSGRAKKILILDCDVHQGD 166
Query: 289 GYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
G F + I + C + K+ I + DQ YL +++ L L
Sbjct: 167 GTIAFFKDRVDIIPVSWHCEENYPPIKQTAGINIAIPKGANDQEYLSILKSTLPAILAEQ 226
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PD + Y+AG DV +D LG + ++ QGI+ RD+ V E ++P + GGY +Q
Sbjct: 227 QPDFVFYDAGVDVHQDDRLGYVNLTDQGILERDKYVLETCVELKLPTACVIGGGYDRQEE 286
Query: 406 RI 407
++
Sbjct: 287 KV 288
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LA G + ++ GG HHA + G GFC + D+++ + S +I+D
Sbjct: 101 GTMLTTELAFEHGLACHLAGGTHHAHPSHGSGFCIFNDLAVAALAMIGSGRAKKILILDC 160
Query: 64 DAHQ 67
D HQ
Sbjct: 161 DVHQ 164
>gi|456861311|gb|EMF79988.1| histone deacetylase family protein [Leptospira weilii serovar Topaz
str. LT2116]
Length = 203
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 94/185 (50%), Gaps = 2/185 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
+GGT+ A L + + +IGGGFHH+ + GFC D ++ VKL ++ + +
Sbjct: 1 MGGTILATELTGKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIAVKLYQKAYPGRKILFI 60
Query: 281 DLDAHQGNGYEKDFMNETRIFI--METCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGL 338
DLD HQGNG F ++ +F M KE I L T+D YLE + L
Sbjct: 61 DLDLHQGNGNSVIFQEDSDVFTFSMHQENLYPKKEKSGLDIPLEEGTDDGKYLELLLESL 120
Query: 339 ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSG 398
+ F PD+I Y AG D D LG L ++ QG+ +RD++V R VP V+L +G
Sbjct: 121 RKIESDFKPDLIFYIAGADPFEGDSLGDLKLTLQGLRKRDKIVRDFVRALDVPAVILPAG 180
Query: 399 GYLKQ 403
GY K
Sbjct: 181 GYAKD 185
Score = 44.7 bits (104), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A L + + +IGGGFHH+ + GFC D ++ VKL ++ + +DL
Sbjct: 3 GTILATELTGKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIAVKLYQKAYPGRKILFIDL 62
Query: 64 DAHQ 67
D HQ
Sbjct: 63 DLHQ 66
>gi|440740501|ref|ZP_20919983.1| putative histone deacetylase family protein [Pseudomonas
fluorescens BRIP34879]
gi|447918449|ref|YP_007399017.1| putative histone deacetylase family protein [Pseudomonas poae
RE*1-1-14]
gi|440376317|gb|ELQ12992.1| putative histone deacetylase family protein [Pseudomonas
fluorescens BRIP34879]
gi|445202312|gb|AGE27521.1| putative histone deacetylase family protein [Pseudomonas poae
RE*1-1-14]
Length = 306
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 135/299 (45%), Gaps = 24/299 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F P D + F L H LV ++ P+
Sbjct: 2 PLPLIYHDDYSPEF-------PADHRFPMDKFRLLRDH----LVSTGLTEDSRLLRPELC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAG 228
+ L +AH Y+ + +S E + +P + + R +R VGG+L A
Sbjct: 51 PPQILALAHEPGYIAR----YMSGELSREDQRRLGLP--WSEALARRTVRA-VGGSLLAA 103
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
AL G + ++ GG HHA GFC + D++++ L S ++ +I D D HQG+
Sbjct: 104 EQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDCDVHQGD 163
Query: 289 GYEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRS 344
G + +++T I + K A + + I L D YL+ ++ L L
Sbjct: 164 GTAR-ILHDTPDAITVSLHCEKNFPARKAQSDWDIALPMGMGDADYLKVVDDALNYLLPL 222
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ G+ RDE V R +P++ + GGY K
Sbjct: 223 YQPDLVLYDAGVDVHKDDALGYLKLTDSGVAARDEAVMRHCLGRDIPVMGVIGGGYSKD 281
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL G + ++ GG HHA GFC + D++++ L S ++ +I D
Sbjct: 98 GSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|28898919|ref|NP_798524.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|153838572|ref|ZP_01991239.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus AQ3810]
gi|260363629|ref|ZP_05776436.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus K5030]
gi|260896197|ref|ZP_05904693.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus Peru-466]
gi|260900725|ref|ZP_05909120.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus AQ4037]
gi|28807138|dbj|BAC60408.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|149748037|gb|EDM58896.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus AQ3810]
gi|308088789|gb|EFO38484.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus Peru-466]
gi|308109740|gb|EFO47280.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus AQ4037]
gi|308115075|gb|EFO52615.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus K5030]
Length = 302
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 138/300 (46%), Gaps = 19/300 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y Y+ +L + H + K+++++ + + V+A+++ EPQ +S
Sbjct: 3 PLIYHSIYSR--LELPEGHRYPIMKYQYLYEEVRRD-----VQAEWV---QFFEPQALSI 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E + H Y+ L AA + P + + R + GTL A
Sbjct: 53 EAIKRVHDADYVDLLAQGNMPAAKMR---RIGFP--WSEALITRTLTS-AAGTLLTAEKA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G ++++ GG+HHA + G GFC + D+ + K + ++ + +I+D D H G+G
Sbjct: 107 LEHGIALHLSGGYHHAHKDFGSGFCLFNDLVIAAKHMLDNEHVDKILIIDSDVHHGDGTA 166
Query: 292 KDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
E I + C + K + LA T+D+ +L + +E +L PD
Sbjct: 167 TLCQEEPDIVTLSFHCDKNFPARKPQSDLDVPLAKGTDDETFLMTFKEVVEMALNLHRPD 226
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
+++Y+AG D+ +D LG +S Q I RD +F + R +P+ + GGY A ++
Sbjct: 227 MVIYDAGVDIHQDDELGYFDVSTQAIFERDRFLFQLMKNRGIPVAAVVGGGYRTNHADLV 286
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL AL G ++++ GG+HHA + G GFC + D+ + K + ++ + +I+D
Sbjct: 98 GTLLTAEKALEHGIALHLSGGYHHAHKDFGSGFCLFNDLVIAAKHMLDNEHVDKILIIDS 157
Query: 64 DAHQ 67
D H
Sbjct: 158 DVHH 161
>gi|423200322|ref|ZP_17186902.1| hypothetical protein HMPREF1167_00485 [Aeromonas veronii AER39]
gi|404619730|gb|EKB16634.1| hypothetical protein HMPREF1167_00485 [Aeromonas veronii AER39]
Length = 298
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 86/183 (46%), Gaps = 3/183 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
VG T+ A AL +G + I GG+HHA G GFC + D+ + + +I+
Sbjct: 93 VGATVAASRHALEQGCGLQISGGYHHAHRDHGSGFCLFNDLVIAAQACLDEGRCEQVLII 152
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAG 337
DLD HQG+G I + K A L D YL ++
Sbjct: 153 DLDVHQGDGSAALCAGRRDIITLSLHGEHNFPHHKAASHLDFPLPSGMADDAYLTTLQQA 212
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L +LR + PD+I+Y AG DV D LG L++S +G+ RD +VF A + +PI +
Sbjct: 213 LSLALRLYSPDLILYQAGVDVHHADELGYLSLSDEGVRLRDAMVFDCAIKHGLPIAAMPG 272
Query: 398 GGY 400
GGY
Sbjct: 273 GGY 275
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
T+ A AL +G + I GG+HHA G GFC + D+ + + +I+DLD
Sbjct: 96 TVAASRHALEQGCGLQISGGYHHAHRDHGSGFCLFNDLVIAAQACLDEGRCEQVLIIDLD 155
Query: 65 AHQ 67
HQ
Sbjct: 156 VHQ 158
>gi|213966783|ref|ZP_03394934.1| histone deacetylase family protein [Pseudomonas syringae pv. tomato
T1]
gi|301383292|ref|ZP_07231710.1| histone deacetylase family protein [Pseudomonas syringae pv. tomato
Max13]
gi|302062469|ref|ZP_07254010.1| histone deacetylase family protein [Pseudomonas syringae pv. tomato
K40]
gi|302133451|ref|ZP_07259441.1| histone deacetylase family protein [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213928633|gb|EEB62177.1| histone deacetylase family protein [Pseudomonas syringae pv. tomato
T1]
Length = 305
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 140/296 (47%), Gaps = 22/296 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y +Y+ F + + P D ++ + +YLV++ ++ P+
Sbjct: 4 PLIYHDDYSPAFAQDHRF-PMDK----------FRLLRDYLVDSGLTRDVQLMRPELCPV 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ L +AH Y+ S S +++ E + +P + + R +R VGG+L A
Sbjct: 53 DILALAHDPSYI-SRYLSGDLS--REDQRRLGLP--WSEALARRTIRA-VGGSLLTAEQA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G + ++ GG HHA GFC + D++++ + L QS + +I D D HQG+G
Sbjct: 107 LTHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVGKVLIFDCDVHQGDGTA 166
Query: 292 KDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ + +T I + K A + + I L D YL ++ L L + P
Sbjct: 167 R-ILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVVDDLLNYLLPFYKP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
D+++Y+AG DV +D LG L ++ +G+ RDE V R +P++ + GGY K
Sbjct: 226 DLVLYDAGVDVHKDDALGYLQLTDRGLANRDEAVLRHCLGRDIPVMGVIGGGYSKD 281
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L AL G + ++ GG HHA GFC + D++++ + L QS + +I D
Sbjct: 98 GSLLTAEQALTHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVGKVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|417760258|ref|ZP_12408284.1| histone deacetylase family protein [Leptospira interrogans str.
2002000624]
gi|417766916|ref|ZP_12414865.1| histone deacetylase family protein [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|417768599|ref|ZP_12416526.1| histone deacetylase family protein [Leptospira interrogans serovar
Pomona str. Pomona]
gi|417774430|ref|ZP_12422295.1| histone deacetylase family protein [Leptospira interrogans str.
2002000621]
gi|417785462|ref|ZP_12433166.1| histone deacetylase family protein [Leptospira interrogans str.
C10069]
gi|418675465|ref|ZP_13236756.1| histone deacetylase family protein [Leptospira interrogans str.
2002000623]
gi|418679801|ref|ZP_13241058.1| histone deacetylase family protein [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|418693218|ref|ZP_13254281.1| histone deacetylase family protein [Leptospira interrogans str.
FPW2026]
gi|418706491|ref|ZP_13267339.1| histone deacetylase family protein [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|418709210|ref|ZP_13270004.1| histone deacetylase family protein [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|418717391|ref|ZP_13277053.1| histone deacetylase family protein [Leptospira interrogans str. UI
08452]
gi|418723865|ref|ZP_13282699.1| histone deacetylase family protein [Leptospira interrogans str. UI
12621]
gi|418729853|ref|ZP_13288395.1| histone deacetylase family protein [Leptospira interrogans str. UI
12758]
gi|421087108|ref|ZP_15547949.1| histone deacetylase family protein [Leptospira santarosai str.
HAI1594]
gi|421104756|ref|ZP_15565349.1| histone deacetylase family protein [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421120054|ref|ZP_15580368.1| histone deacetylase family protein [Leptospira interrogans str.
Brem 329]
gi|421126066|ref|ZP_15586310.1| histone deacetylase family protein [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421136771|ref|ZP_15596868.1| histone deacetylase family protein [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|45600255|gb|AAS69741.1| histone deacetylase [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
gi|400328402|gb|EJO80634.1| histone deacetylase family protein [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|400350722|gb|EJP02980.1| histone deacetylase family protein [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|400356876|gb|EJP13034.1| histone deacetylase family protein [Leptospira interrogans str.
FPW2026]
gi|409943825|gb|EKN89416.1| histone deacetylase family protein [Leptospira interrogans str.
2002000624]
gi|409949245|gb|EKN99222.1| histone deacetylase family protein [Leptospira interrogans serovar
Pomona str. Pomona]
gi|409951327|gb|EKO05842.1| histone deacetylase family protein [Leptospira interrogans str.
C10069]
gi|409962663|gb|EKO26397.1| histone deacetylase family protein [Leptospira interrogans str. UI
12621]
gi|410018953|gb|EKO85781.1| histone deacetylase family protein [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410347140|gb|EKO98059.1| histone deacetylase family protein [Leptospira interrogans str.
Brem 329]
gi|410365066|gb|EKP20461.1| histone deacetylase family protein [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410430217|gb|EKP74587.1| histone deacetylase family protein [Leptospira santarosai str.
HAI1594]
gi|410436718|gb|EKP85830.1| histone deacetylase family protein [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410575763|gb|EKQ38780.1| histone deacetylase family protein [Leptospira interrogans str.
2002000621]
gi|410577627|gb|EKQ45497.1| histone deacetylase family protein [Leptospira interrogans str.
2002000623]
gi|410764116|gb|EKR34835.1| histone deacetylase family protein [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|410770546|gb|EKR45765.1| histone deacetylase family protein [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|410775466|gb|EKR55458.1| histone deacetylase family protein [Leptospira interrogans str. UI
12758]
gi|410786988|gb|EKR80723.1| histone deacetylase family protein [Leptospira interrogans str. UI
08452]
gi|455666672|gb|EMF32079.1| histone deacetylase family protein [Leptospira interrogans serovar
Pomona str. Fox 32256]
gi|455790835|gb|EMF42682.1| histone deacetylase family protein [Leptospira interrogans serovar
Lora str. TE 1992]
gi|456825484|gb|EMF73880.1| histone deacetylase family protein [Leptospira interrogans serovar
Canicola str. LT1962]
gi|456969210|gb|EMG10271.1| histone deacetylase family protein [Leptospira interrogans serovar
Grippotyphosa str. LT2186]
gi|456988116|gb|EMG23271.1| histone deacetylase family protein [Leptospira interrogans serovar
Copenhageni str. LT2050]
Length = 271
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 113/244 (46%), Gaps = 10/244 (4%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
I +P + L + HT+++L +S N+ ++ L + K + VG
Sbjct: 17 IYKPDLAKTKDLSLVHTQEFLDDF-FSLNITERTQYSELP------LTKQIVHSFVLAVG 69
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
GT+ + L + + +IGGGFHH+ + GFC D ++ KL + + +DL
Sbjct: 70 GTILSMELTQKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIASKLYQKEYPDKKILFIDL 129
Query: 283 DAHQGNGYEKDFMNETRIFI--METCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLER 340
D HQGNG F N+ +F M KE I L D+ YLE +E L +
Sbjct: 130 DLHQGNGNSFIFQNDPDVFTFSMHQENLYPKKEKSDLDISLEEGIGDKEYLELLEKSLRK 189
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE-RRVPIVMLTSGG 399
F PD+I Y AG D D LG L ++ QG+ +RD++V A +V+L +GG
Sbjct: 190 IESDFKPDLIFYIAGADPFEGDSLGDLKLTFQGLRKRDQIVRDFAYSLNDTRVVILPAGG 249
Query: 400 YLKQ 403
Y K
Sbjct: 250 YAKD 253
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ + L + + +IGGGFHH+ + GFC D ++ KL + + +DL
Sbjct: 70 GTILSMELTQKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIASKLYQKEYPDKKILFIDL 129
Query: 64 DAHQ 67
D HQ
Sbjct: 130 DLHQ 133
>gi|359789845|ref|ZP_09292775.1| hypothetical protein MAXJ12_10690 [Mesorhizobium alhagi CCNWXJ12-2]
gi|359254255|gb|EHK57283.1| hypothetical protein MAXJ12_10690 [Mesorhizobium alhagi CCNWXJ12-2]
Length = 281
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 109/254 (42%), Gaps = 9/254 (3%)
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
T N+ +P L +AH Y+ + A ++ + P + + R +
Sbjct: 18 TPSNLHKPTPAEPGWLKLAHDATYIDQV---IACAVPPKIEREIGFP---IGERVSRRAQ 71
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
GGT+ A LAL G + N GG HHA G GFC + D+++ +L + +
Sbjct: 72 LAAGGTILAARLALANGIACNTAGGSHHARRDHGAGFCTFNDVAVAALVLIAEGLAANVL 131
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIE 335
IVDLD HQG+G NE R F K A + L T D YL ++
Sbjct: 132 IVDLDVHQGDGTADILKNEPRAFTFSMHGERNYPVRKIASDLDVALPDGTGDDAYLGRLT 191
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
L DI+ YNAG D +D LG LA+S G+ RD L RER +P+ +
Sbjct: 192 DILTDISGRAAWDIVFYNAGVDPHADDRLGRLALSDYGLRARDWLTIGHFRERGIPVCGV 251
Query: 396 TSGGYLKQTARIIA 409
GGY + + A
Sbjct: 252 IGGGYSRDIGALAA 265
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LAL G + N GG HHA G GFC + D+++ +L + +IVDL
Sbjct: 76 GTILAARLALANGIACNTAGGSHHARRDHGAGFCTFNDVAVAALVLIAEGLAANVLIVDL 135
Query: 64 DAHQ 67
D HQ
Sbjct: 136 DVHQ 139
>gi|220926539|ref|YP_002501841.1| histone deacetylase superfamily protein [Methylobacterium nodulans
ORS 2060]
gi|219951146|gb|ACL61538.1| histone deacetylase superfamily [Methylobacterium nodulans ORS
2060]
Length = 298
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 124/292 (42%), Gaps = 21/292 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+V+ P Y L H F +K+ + L + + + + P+
Sbjct: 3 PVVFHPAYEA---GLPDGHRFPMRKYGRLAEILVE---------RGLVPNGFARPEPAGA 50
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ +AH Y++ + AI + +P V R GGTL A LA
Sbjct: 51 GTVALAHDPFYVEQVLTGTVPRAIETA---IGLP---VDAGVARRALASAGGTLLAARLA 104
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G + + GG HH +GGGFC + D+++ L + +I A+I+DLD HQG+G
Sbjct: 105 LAGGLAGSTAGGSHHGRRARGGGFCVFNDVAVAALALHREGTIRRALIIDLDVHQGDGTA 164
Query: 292 KDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
E +F K I L +D YL + + R L + PD
Sbjct: 165 DCLAAEPDLFTFSMHGEKNYPADKVPGDLDIGLPDGLDDDGYLAVLHQHVPRLLDALAPD 224
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
++ YNAG D +D LG LA++ G+ RD V + R R +P+ + GGY
Sbjct: 225 LVFYNAGVDPHRDDRLGRLALTDAGLAARDRHVIGETRRRGIPLAAVIGGGY 276
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 23 GGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
GG HH +GGGFC + D+++ L + +I A+I+DLD HQ
Sbjct: 115 GGSHHGRRARGGGFCVFNDVAVAALALHREGTIRRALIIDLDVHQ 159
>gi|52545875|emb|CAH56375.1| hypothetical protein [Homo sapiens]
gi|119584562|gb|EAW64158.1| histone deacetylase 11, isoform CRA_b [Homo sapiens]
Length = 236
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 65/100 (65%), Gaps = 8/100 (8%)
Query: 126 LEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKS 185
LEKLHPFD+ KW + N+L E K ++ ++E +E SEE LL+ HT +YL
Sbjct: 3 LEKLHPFDAGKWGKVINFL--------KEEKLLSDSMLVEAREASEEDLLVVHTRRYLNE 54
Query: 186 LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTL 225
LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R GGT+
Sbjct: 55 LKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTI 94
>gi|429330586|ref|ZP_19211372.1| histone deacetylase superfamily protein [Pseudomonas putida CSV86]
gi|428764696|gb|EKX86825.1| histone deacetylase superfamily protein [Pseudomonas putida CSV86]
Length = 304
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 132/296 (44%), Gaps = 22/296 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY +Y+ F + P D + H ++L+ + T + P
Sbjct: 4 PLVYHDDYSPEFPAGHRF-PMDKFRLLH----------DHLIASGLTTDAELHRPDICPN 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ L +AH Y++ N E + +P + + R +R VGG+L A LA
Sbjct: 53 DILALAHDRAYIERY---MNGELSREDQRRLGLP--WSEALARRTVRA-VGGSLLAAELA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L+ G + ++ GG HHA GFC + D++++ L ++ + +I D D HQG+G
Sbjct: 107 LQHGIACHLAGGTHHAHYDHPAGFCIFNDLAVISHYLLEAGRVHRVLIFDCDVHQGDGTA 166
Query: 292 KDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ + T I + + + R I L D YL+ ++ L L + P
Sbjct: 167 R-ILEHTADAITVSLHCEQNFPVRKARSDWDIPLHRGMGDSEYLKIVDDALNYLLPLYQP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
D+++Y+AG DV +D LG L ++ G+ RD V R +P+V + GGY K
Sbjct: 226 DLVLYDAGVDVHKDDALGYLQLTDAGVAARDTCVLRHCLGRDIPVVGVIGGGYSKD 281
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A LAL+ G + ++ GG HHA GFC + D++++ L ++ + +I D
Sbjct: 98 GSLLAAELALQHGIACHLAGGTHHAHYDHPAGFCIFNDLAVISHYLLEAGRVHRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|388569916|ref|ZP_10156296.1| histone deacetylase [Hydrogenophaga sp. PBC]
gi|388262888|gb|EIK88498.1| histone deacetylase [Hydrogenophaga sp. PBC]
Length = 331
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 92/195 (47%), Gaps = 12/195 (6%)
Query: 218 RYHVGGTLEAGFLALRRGWSI--NIGGGFHHASETKGGGFCAYADISLLVKLL------- 268
R VG TL+A + +G + N+ GG HHA KGGGFC + D ++ +L+
Sbjct: 89 RRSVGATLQAARRVMGQGGGLAANLAGGTHHAYADKGGGFCVFNDFAVAARLMQAEHARR 148
Query: 269 FQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYT 325
+ IVDLD HQGNG + F + +F + KE +EL
Sbjct: 149 HDRREPLRVAIVDLDVHQGNGTARIFAGDASVFTLSLHGAKNFPFRKEPSDLDVELPDGC 208
Query: 326 EDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKA 385
D YL +E L+ R F P++++Y AG D D LG L +S G+ RD V A
Sbjct: 209 ADDDYLHALELALDELDRRFEPELVLYLAGADPHEGDRLGRLKLSFDGLEARDRRVMDWA 268
Query: 386 RERRVPIVMLTSGGY 400
RR+P+V GGY
Sbjct: 269 WSRRLPLVFAMGGGY 283
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 16 GWSINIGGGFHHASETKGGGFCAYADISLLVKLL-------FQSKSISTAMIVDLDAHQ 67
G + N+ GG HHA KGGGFC + D ++ +L+ + IVDLD HQ
Sbjct: 108 GLAANLAGGTHHAYADKGGGFCVFNDFAVAARLMQAEHARRHDRREPLRVAIVDLDVHQ 166
>gi|308094689|ref|ZP_05891236.2| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus AN-5034]
gi|308094251|gb|EFO43946.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus AN-5034]
Length = 288
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 94/190 (49%), Gaps = 3/190 (1%)
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 281
GTL AL G ++++ GG+HHA + G GFC + D+ + K + ++ + +I+D
Sbjct: 83 AGTLLTAEKALEHGIALHLSGGYHHAHKDFGSGFCLFNDLVIAAKHMLDNEHVDKILIID 142
Query: 282 LDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGL 338
D H G+G E I + C + K + LA T+D+ +L + +
Sbjct: 143 SDVHHGDGTATLCQEEPDIVTLSFHCDKNFPARKPQSDLDVPLAKGTDDETFLMTFKEVV 202
Query: 339 ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSG 398
E +L PD+++Y+AG D+ +D LG +S Q I RD +F + R +P+ + G
Sbjct: 203 EMALNLHRPDMVIYDAGVDIHQDDELGYFDVSTQAIFERDRFLFQLMKNRGIPVAAVVGG 262
Query: 399 GYLKQTARII 408
GY A ++
Sbjct: 263 GYRTNHADLV 272
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GTL AL G ++++ GG+HHA + G GFC + D+ + K + ++ + +I+D
Sbjct: 84 GTLLTAEKALEHGIALHLSGGYHHAHKDFGSGFCLFNDLVIAAKHMLDNEHVDKILIIDS 143
Query: 64 DAHQ 67
D H
Sbjct: 144 DVHH 147
>gi|300703916|ref|YP_003745518.1| histone deacetylase [Ralstonia solanacearum CFBP2957]
gi|299071579|emb|CBJ42903.1| Histone deacetylase [Ralstonia solanacearum CFBP2957]
Length = 324
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 109/244 (44%), Gaps = 15/244 (6%)
Query: 165 EPQEVSEEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGG 223
E ++ LL+AH Y+ ++ + A E+ + + R G
Sbjct: 44 EAPRAGDDALLLAHAPDYVHAVGAGKLDPARQREI-------GFPWSSAMVERSRRSAGA 96
Query: 224 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST----AMI 279
T+ A A+ G ++N+ GG HHA KGGGFC + D ++ + + + + I
Sbjct: 97 TMAACEAAMADGTAVNLAGGTHHAYADKGGGFCVFNDAAIASRWMQRRPGRAPEDFPVAI 156
Query: 280 VDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEA 336
VDLD HQGNG ++ +F + KE + L D YLE +
Sbjct: 157 VDLDVHQGNGTASILRDDASVFTLSLHGEKNYPFRKEVSDLDVGLPDGCGDAAYLEALAG 216
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
L+ F P +I+Y AG D D LG L ++ G+ RRD+ VF A +R+PI +
Sbjct: 217 ALDTLAARFAPRLIIYLAGADPHEGDRLGRLKLTMDGLARRDQQVFDFAFLQRIPIAITM 276
Query: 397 SGGY 400
+GGY
Sbjct: 277 AGGY 280
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS----TAMI 60
T+ A A+ G ++N+ GG HHA KGGGFC + D ++ + + + + I
Sbjct: 97 TMAACEAAMADGTAVNLAGGTHHAYADKGGGFCVFNDAAIASRWMQRRPGRAPEDFPVAI 156
Query: 61 VDLDAHQ 67
VDLD HQ
Sbjct: 157 VDLDVHQ 163
>gi|398804556|ref|ZP_10563549.1| deacetylase, histone deacetylase/acetoin utilization protein
[Polaromonas sp. CF318]
gi|398093553|gb|EJL83931.1| deacetylase, histone deacetylase/acetoin utilization protein
[Polaromonas sp. CF318]
Length = 295
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 115/259 (44%), Gaps = 25/259 (9%)
Query: 160 QDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRY 219
Q + + ++ +L + HT Y+ ++ AA P + R
Sbjct: 17 QVRMAQAPAATDGELALVHTPDYIDAISHGTLPAAAQREIGFPWSPGMAERA------RR 70
Query: 220 HVGGTLEAGFLALR------RGWSINIGGGFHHASETKGGGFCAYADISLLVKLL----- 268
G T+ A +A+ G + N+ GG HH+ KGGGFC + D ++ +L+
Sbjct: 71 SAGATVAAARVAMGAPGRPGEGVAANLAGGTHHSYAHKGGGFCVFNDAAVAARLMQAEWA 130
Query: 269 ----FQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIEL 321
K + A I+DLD HQGNG F N+ +F + KEA ++L
Sbjct: 131 RQRRHGRKPLQVA-IIDLDVHQGNGTASIFANDPSVFTLSLHGQKNFPFRKEASDLDVDL 189
Query: 322 APYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV 381
D YL+ +E L+ R F P +I++ AG D D LG LA+S G+ RD V
Sbjct: 190 PDGCGDAAYLQALEHALDELERRFEPGLILFLAGADPYEGDRLGRLALSFDGLEARDRRV 249
Query: 382 FMKARERRVPIVMLTSGGY 400
F A +RR+P+ +GGY
Sbjct: 250 FDWAWQRRIPLAFAMAGGY 268
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
Query: 16 GWSINIGGGFHHASETKGGGFCAYADISLLVKLL---------FQSKSISTAMIVDLDAH 66
G + N+ GG HH+ KGGGFC + D ++ +L+ K + A I+DLD H
Sbjct: 92 GVAANLAGGTHHSYAHKGGGFCVFNDAAVAARLMQAEWARQRRHGRKPLQVA-IIDLDVH 150
Query: 67 Q 67
Q
Sbjct: 151 Q 151
>gi|388547860|ref|ZP_10151119.1| putative histone deacetylase family protein [Pseudomonas sp. M47T1]
gi|388274018|gb|EIK93621.1| putative histone deacetylase family protein [Pseudomonas sp. M47T1]
Length = 305
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 20/297 (6%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F E P D ++ + ++LV++ +++ P
Sbjct: 2 PLPLIYHDDYSPQF-PPEHRFPMDK----------FRLLRDHLVDSGLTRDADLLRPAVC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
+ L +AH Y++ + E + +P + + R +R VGG+L A
Sbjct: 51 PADTLALAHDRDYIERF---MSGQLGREDQRRLGLP--WSEALARRTVRA-VGGSLLAAE 104
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
AL+ G + ++ GG HHA GFC + D++++ + L S + + +I D D HQG+G
Sbjct: 105 QALQHGLACHLAGGTHHAHYDHPAGFCIFNDLAIISRYLLASGRVGSVLIFDCDVHQGDG 164
Query: 290 YEKDFMN-ETRIFIMETCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
+ N I + C + K I L D YL+ ++ L L +
Sbjct: 165 TARILANTPDAITVSLHCEKNFPARKADSDWDIPLPMGMGDADYLQVVDDTLNYLLPLYK 224
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD+++Y+AG DV +D LG L ++ G+ RDE V R + ++ + GGY K
Sbjct: 225 PDLVLYDAGVDVHKDDALGYLQLTDAGVSARDERVLRHCLGRDIAVMGVIGGGYSKD 281
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL+ G + ++ GG HHA GFC + D++++ + L S + + +I D
Sbjct: 98 GSLLAAEQALQHGLACHLAGGTHHAHYDHPAGFCIFNDLAIISRYLLASGRVGSVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|86140956|ref|ZP_01059515.1| Histone deacetylase superfamily protein [Leeuwenhoekiella
blandensis MED217]
gi|85832898|gb|EAQ51347.1| Histone deacetylase superfamily protein [Leeuwenhoekiella
blandensis MED217]
Length = 300
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 131/302 (43%), Gaps = 29/302 (9%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PI P H F +EK ++ L K + L E T+ N EP E
Sbjct: 8 PIYKHPLPEGHRFPMEK------------YDLLPKQL---LCEGT-CTEANFFEPGFPEE 51
Query: 172 EQLLIAHTEKYLKSLK-WSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+ L HT++Y+ +LK + + AI + + + + + + GT+
Sbjct: 52 KYLTAVHTQEYVTNLKALNLDRRAIRKT-------GFPLSQELVDREQIIAQGTMTGCEF 104
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA-MIVDLDAHQGNG 289
AL+ G + NI GG HHA G FC D ++ + L QSK ++ +IVDLD HQGNG
Sbjct: 105 ALKYGIAFNIAGGTHHAYSGHGEAFCLLNDQAIAARYL-QSKGLAKQILIVDLDVHQGNG 163
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
+ F ++ +F KE I + + D YL K++ L R +
Sbjct: 164 TAEIFQDDPSVFTFSMHGAGNYPFKKETSDLDIAVPDKSGDAVYLAKLKETLPRLIDQVK 223
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
PD I Y +G D+L D LG L+ + +G RD RE +P+ + GGY
Sbjct: 224 PDFIFYLSGVDILETDKLGRLSCTVEGCKERDRFALSCFRESGIPVQVSMGGGYSPDIKV 283
Query: 407 II 408
II
Sbjct: 284 II 285
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA-MIVD 62
GT+ AL+ G + NI GG HHA G FC D ++ + L QSK ++ +IVD
Sbjct: 97 GTMTGCEFALKYGIAFNIAGGTHHAYSGHGEAFCLLNDQAIAARYL-QSKGLAKQILIVD 155
Query: 63 LDAHQ 67
LD HQ
Sbjct: 156 LDVHQ 160
>gi|296123734|ref|YP_003631512.1| histone deacetylase [Planctomyces limnophilus DSM 3776]
gi|296016074|gb|ADG69313.1| Histone deacetylase [Planctomyces limnophilus DSM 3776]
Length = 311
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 112/250 (44%), Gaps = 10/250 (4%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
++EP ++ Q+L+AH YL + V+A + + + R G
Sbjct: 47 LLEPPAATDAQILLAHNADYL------YKVSAGEMTRDDIKRLGFPWSPELIERSRRSSG 100
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
T+EA AL G+ N+ GG HHA + GFC + D + ++L + + + +IVD
Sbjct: 101 ATIEAARSALVHGFGANLAGGTHHAYADRAEGFCIFNDSVIAARVLQKEQLVQRVLIVDG 160
Query: 283 DAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLE 339
D HQGNG + IF KE L T D YL ++ GL
Sbjct: 161 DVHQGNGTAAITRQDPSIFTFSIHSERNYPFVKETSDLDYGLPDETGDDAYLAALDEGLA 220
Query: 340 RSLRSFC-PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSG 398
R F PD++++ AG D D +G LA++ G+ RD LV+ + +P+ + +G
Sbjct: 221 ACARRFPQPDLVLFLAGADPFEGDKMGRLALTKAGLRARDRLVYRFCEQYGLPVAISMAG 280
Query: 399 GYLKQTARII 408
GY + I+
Sbjct: 281 GYSPRVEDIV 290
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
T+EA AL G+ N+ GG HHA + GFC + D + ++L + + + +IVD
Sbjct: 101 ATIEAARSALVHGFGANLAGGTHHAYADRAEGFCIFNDSVIAARVLQKEQLVQRVLIVDG 160
Query: 64 DAHQFSDYYF-----PS--AHSIKRKRKVEFLKERKALE 95
D HQ + PS SI +R F+KE L+
Sbjct: 161 DVHQGNGTAAITRQDPSIFTFSIHSERNYPFVKETSDLD 199
>gi|418702252|ref|ZP_13263163.1| histone deacetylase family protein [Leptospira interrogans serovar
Bataviae str. L1111]
gi|410758771|gb|EKR24997.1| histone deacetylase family protein [Leptospira interrogans serovar
Bataviae str. L1111]
Length = 271
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 112/244 (45%), Gaps = 10/244 (4%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
I +P + L + HT+++L +S N+ ++ L + K + VG
Sbjct: 17 IYKPDLAKTKDLSLVHTQEFLDDF-FSLNITERTQYSELP------LTKQIVHSFVLAVG 69
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
GT+ + L + + +IGGGFHH+ + GFC D ++ KL + + +DL
Sbjct: 70 GTILSMELTQKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIASKLYQKEYPDKKILFIDL 129
Query: 283 DAHQGNGYEKDFMNETRIFI--METCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLER 340
D HQGNG F N+ +F M KE I L D+ YLE +E L
Sbjct: 130 DLHQGNGNSFIFQNDPNVFTFSMHQENLYPKKEKSDLDISLEEGIGDKEYLELLEKSLRE 189
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE-RRVPIVMLTSGG 399
F PD+I Y AG D D LG L ++ QG+ +RD++V A +V+L +GG
Sbjct: 190 IESDFKPDLIFYIAGADPFEGDSLGDLKLTFQGLRKRDQIVRDFAYSLNDTRVVILPAGG 249
Query: 400 YLKQ 403
Y K
Sbjct: 250 YAKD 253
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ + L + + +IGGGFHH+ + GFC D ++ KL + + +DL
Sbjct: 70 GTILSMELTQKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIASKLYQKEYPDKKILFIDL 129
Query: 64 DAHQ 67
D HQ
Sbjct: 130 DLHQ 133
>gi|334121393|ref|ZP_08495463.1| Histone deacetylase [Microcoleus vaginatus FGP-2]
gi|333455107|gb|EGK83768.1| Histone deacetylase [Microcoleus vaginatus FGP-2]
Length = 305
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 3/183 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
V GT+ LAL G + N GG HHA G GFC + D+++ ++L ++ + +IV
Sbjct: 96 VAGTVLTAKLALDYGLACNTAGGTHHAFPAFGSGFCIFNDLAIASRVLQKNGLVRKVLIV 155
Query: 281 DLDAHQGNGYEKDFMNETRIFIMET-CITS--KAKEAIRCRIELAPYTEDQHYLEKIEAG 337
DLD HQG+G F +++ +F C + K+ + L ED YL+ ++
Sbjct: 156 DLDVHQGDGTAVIFQDDSSVFTFSMHCEVNFPGTKQKGDLDVPLPVGMEDDEYLQTLDKF 215
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L L + PD+++Y+AG D D LG LA++ G+ RR+ V M P+ +
Sbjct: 216 LPDLLSTVKPDLVLYDAGVDPHHGDKLGKLALTDTGLFRREMQVLMACLAGGYPVACVIG 275
Query: 398 GGY 400
GGY
Sbjct: 276 GGY 278
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G + N GG HHA G GFC + D+++ ++L ++ + +IVDL
Sbjct: 98 GTVLTAKLALDYGLACNTAGGTHHAFPAFGSGFCIFNDLAIASRVLQKNGLVRKVLIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|94985520|ref|YP_604884.1| histone deacetylase superfamily protein [Deinococcus geothermalis
DSM 11300]
gi|94555801|gb|ABF45715.1| histone deacetylase superfamily [Deinococcus geothermalis DSM
11300]
Length = 306
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 88/194 (45%), Gaps = 3/194 (1%)
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
R GG+L A AL +GW N+ GG HHA + GFC D ++L L
Sbjct: 98 RRAAGGSLAALHDALAQGWGANLAGGTHHAFRDRAEGFCLVNDAAILTHLALDEGLARRV 157
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
I+DLD HQGNG E R + KE + L D YL +
Sbjct: 158 AILDLDVHQGNGTAALLAGEERALTLSIHGERNYPFRKETSSLDLGLPDGVTDAEYLRVL 217
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
+ L +F PD+++Y AG DVL D G A++ G+ R+ V ARE VP+V
Sbjct: 218 QDEALPVLDAFRPDLLLYLAGVDVLAGDRFGRFALTLAGVRERNRRVLRWAREAGVPVVT 277
Query: 395 LTSGGYLKQTARII 408
+ +GGY + A +
Sbjct: 278 MLAGGYNRDHALTV 291
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL +GW N+ GG HHA + GFC D ++L L I+DL
Sbjct: 103 GSLAALHDALAQGWGANLAGGTHHAFRDRAEGFCLVNDAAILTHLALDEGLARRVAILDL 162
Query: 64 DAHQ 67
D HQ
Sbjct: 163 DVHQ 166
>gi|262276254|ref|ZP_06054063.1| histone deacetylase/AcuC/AphA family protein [Grimontia hollisae
CIP 101886]
gi|262220062|gb|EEY71378.1| histone deacetylase/AcuC/AphA family protein [Grimontia hollisae
CIP 101886]
Length = 304
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 134/303 (44%), Gaps = 27/303 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y+ F L + H + +K++ + +YL H F +T+ P+ ++
Sbjct: 3 PVIYHPIYS--DFPLPEGHRYPLQKYRLLRDYLDTHAFP-------VTE---YRPRPINS 50
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGF 229
E L H Y+++L + PLV + + + ++ +GGT
Sbjct: 51 EVLKQIHDAGYVEAL--------VKGTLPLVKMRRIGFPWSEALIQRSLTSLGGTTLVVD 102
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
A++ G +I++ GG+HHA G GFC + D+ L + I +IVD D H G+G
Sbjct: 103 KAIKHGVAIHLTGGYHHAHYDFGSGFCLFNDLVLAASHALTHEGIDKVLIVDCDVHHGDG 162
Query: 290 YEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
+ I E S+ K A + L T YL L +L +
Sbjct: 163 TATLAAGRSDIVTFSVHCEKNFPSR-KPASDIDLPLPMGTTSDAYLSAFIPCLTLALAQY 221
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PD+++Y+AG D+ +D LG L + QGI RD V ++ +P+ + GGY +
Sbjct: 222 QPDLVIYDAGVDIHQDDELGYLNVCQQGIAERDAAVLKACQKHNIPVAAVIGGGYRTEQE 281
Query: 406 RII 408
++
Sbjct: 282 TLV 284
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
A++ G +I++ GG+HHA G GFC + D+ L + I +IVD D H
Sbjct: 104 AIKHGVAIHLTGGYHHAHYDFGSGFCLFNDLVLAASHALTHEGIDKVLIVDCDVHH 159
>gi|323493174|ref|ZP_08098305.1| histone deacetylase/AcuC/AphA family protein [Vibrio brasiliensis
LMG 20546]
gi|323312645|gb|EGA65778.1| histone deacetylase/AcuC/AphA family protein [Vibrio brasiliensis
LMG 20546]
Length = 307
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 122/251 (48%), Gaps = 15/251 (5%)
Query: 164 IEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNY---FVQKCYLRPMRYH 220
+EP+ V++ +L H +Y++SL IS P V + + Q+ R +
Sbjct: 50 VEPEPVNKAELSQIHCGEYIESL--------ISGALPAVKMRRIGFPWSQELINRTL-MS 100
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
GGT E ++ G +I++ GG+HHA G GFC D+ + K + + +IV
Sbjct: 101 AGGTCETVRQSIEHGIAIHLSGGYHHAHFDFGSGFCLINDLVIAAKRGLTIEGVDKILIV 160
Query: 281 DLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAG 337
D D H G+G ++ +I + C + K + L T D+ +L +
Sbjct: 161 DSDVHHGDGTATLCASDEQIVTLSFHCDKNFPARKPDSDLDVPLTRDTGDEEFLATFTSV 220
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
+E ++ PD+IVY+AG D+ +D LG L ++ +GI RD +F A+++++PI +
Sbjct: 221 VEMAINLHQPDVIVYDAGVDIHQDDELGYLNVTSEGIYARDRFMFELAKQKQLPIACVVG 280
Query: 398 GGYLKQTARII 408
GGY Q ++
Sbjct: 281 GGYRSQHHELV 291
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT E ++ G +I++ GG+HHA G GFC D+ + K + + +IVD
Sbjct: 103 GTCETVRQSIEHGIAIHLSGGYHHAHFDFGSGFCLINDLVIAAKRGLTIEGVDKILIVDS 162
Query: 64 DAHQ 67
D H
Sbjct: 163 DVHH 166
>gi|383451822|ref|YP_005358543.1| Histone deacetylase family protein [Flavobacterium indicum
GPTSA100-9]
gi|380503444|emb|CCG54486.1| Histone deacetylase family protein [Flavobacterium indicum
GPTSA100-9]
Length = 300
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 110/248 (44%), Gaps = 13/248 (5%)
Query: 166 PQEVSEEQLLIAHTEKYLKSL-KWSFNVAAISEVC-PLVAVPNYFVQKCYLRPMRYHVGG 223
P+ + E ++ H +KY++ L + + A+ ++ PL + + R R G
Sbjct: 46 PELPNLEDIIAVHDKKYVQQLLDLTLDPRAVRKIGFPLSS-------ELIEREFRL-AQG 97
Query: 224 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 283
T+E A + NI GG HHA +G FC D ++ + L K +I+DLD
Sbjct: 98 TIEGAKNACIDKIAFNIAGGTHHAYSNRGEAFCLLNDQAIAAQYLLNQKLAKQILIIDLD 157
Query: 284 AHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLER 340
HQGNG + F N R+F S KE I L T D YL I + +
Sbjct: 158 VHQGNGTAEIFQNNPRVFTFSVHGKSNYPFKKEQSDLDIALPDQTSDADYLALISKEIPK 217
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
++ PD I Y +G D+L D LG L + G RD +VF + ++P+ + GGY
Sbjct: 218 LIQQVQPDFIFYLSGVDILATDKLGKLGCTINGCKERDVIVFENCLKFQIPVQVSMGGGY 277
Query: 401 LKQTARII 408
II
Sbjct: 278 SPDIKTII 285
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+E A + NI GG HHA +G FC D ++ + L K +I+DL
Sbjct: 97 GTIEGAKNACIDKIAFNIAGGTHHAYSNRGEAFCLLNDQAIAAQYLLNQKLAKQILIIDL 156
Query: 64 DAHQ-------FSDYYFPSAHSIKRKRKVEFLKERK----ALEDEITSEPQESVVTRPWP 112
D HQ F + S+ K F KE+ AL D+ + +++++ P
Sbjct: 157 DVHQGNGTAEIFQNNPRVFTFSVHGKSNYPFKKEQSDLDIALPDQTSDADYLALISKEIP 216
>gi|422648104|ref|ZP_16711229.1| histone deacetylase family protein [Pseudomonas syringae pv.
maculicola str. ES4326]
gi|330961643|gb|EGH61903.1| histone deacetylase family protein [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 305
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 136/297 (45%), Gaps = 24/297 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y +Y+ F + P D ++ + +YLV++ +I P+
Sbjct: 4 PLIYHDDYSPAFPADHRF-PMDK----------FRLLRDYLVDSGLTRDVQLIRPELCPT 52
Query: 172 EQLLIAHTEKYL-KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+ L +AH Y+ + L + E + +P + + R +R VGG+L
Sbjct: 53 DILALAHDPSYIGRYLSGDLS----REDQRRLGLP--WSEALARRTIRA-VGGSLLTAEK 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G + ++ GG HHA GFC + D++++ L QS + +I D D HQG+G
Sbjct: 106 ALTHGMACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLQSGRVHKILIFDCDVHQGDGT 165
Query: 291 EKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFC 346
+ + +T I + K A + + I L D YL ++ L L +
Sbjct: 166 AR-ILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDVGYLNVVDDLLNYLLPFYK 224
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD+++Y+AG DV +D LG L ++ QG+ RDE V R +P++ + GGY K
Sbjct: 225 PDLVLYDAGVDVHKDDALGYLQLTDQGVANRDEAVLRHCLGRDIPVMGVIGGGYSKD 281
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L AL G + ++ GG HHA GFC + D++++ L QS + +I D
Sbjct: 98 GSLLTAEKALTHGMACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLQSGRVHKILIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|254230476|ref|ZP_04923852.1| histone deacetylase family, putative [Vibrio sp. Ex25]
gi|262393694|ref|YP_003285548.1| histone deacetylase/AcuC/AphA family protein [Vibrio sp. Ex25]
gi|151937004|gb|EDN55886.1| histone deacetylase family, putative [Vibrio sp. Ex25]
gi|262337288|gb|ACY51083.1| histone deacetylase/AcuC/AphA family protein [Vibrio sp. Ex25]
Length = 307
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 138/300 (46%), Gaps = 15/300 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P +Y P Y+ +L + H + K++ YL++ + ++ + + +P+ ++
Sbjct: 3 PFIYHPIYSQ--LELPEGHRYPIMKYQ----YLYESVLVHMEKDNWKEHVQFFQPEALTV 56
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E++ H ++Y+ L N + + P + + R + G L A A
Sbjct: 57 EEVKRVHDQEYVDLL---VNGNMPAAKMRRIGFP--WSESLITRTLTSAAGTALTAN-KA 110
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G +I++ GG+HHA + G GFC + D+ + + + + + +I+D D H G+G
Sbjct: 111 LEYGVAIHLSGGYHHAHKEFGSGFCLFNDLVIAARQALEVEHVDKVLIIDSDVHHGDGTA 170
Query: 292 KDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
+E I + C + K + L T D+ +L + ++ +L PD
Sbjct: 171 TLCHDEPDIITLSFHCDKNFPARKPQSDLDVPLVRGTGDEDFLMAFKEVVDMALNLHRPD 230
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
+++Y+AG D+ +D LG +S QGI+ RD + + R +P+ + GGY A ++
Sbjct: 231 LVIYDAGVDIHQDDELGYFDVSTQGILERDRFLMQTMKSRGIPVAAVVGGGYRTNHADLV 290
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT AL G +I++ GG+HHA + G GFC + D+ + + + + + +I+D
Sbjct: 102 GTALTANKALEYGVAIHLSGGYHHAHKEFGSGFCLFNDLVIAARQALEVEHVDKVLIIDS 161
Query: 64 DAHQ 67
D H
Sbjct: 162 DVHH 165
>gi|423693709|ref|ZP_17668229.1| histone deacetylase family protein [Pseudomonas fluorescens SS101]
gi|388002286|gb|EIK63615.1| histone deacetylase family protein [Pseudomonas fluorescens SS101]
Length = 306
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 137/299 (45%), Gaps = 24/299 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F P D + F L H LV++ ++ P
Sbjct: 2 PLPLIYHEDYSPEF-------PADHRFPMDKFRLLRDH----LVDSGLTEDSQLLRPPLC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAG 228
+ L +AH Y++ + +S E + +P + + R +R VGG++ A
Sbjct: 51 PADILALAHEPGYIER----YMGGELSREDQRRLGLP--WSEALARRTVRA-VGGSILAA 103
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
AL G + ++ GG HHA GFC + D++++ L S ++ +I D D HQG+
Sbjct: 104 EQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDCDVHQGD 163
Query: 289 GYEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRS 344
G + +++T I + K A + + I L D YL+ ++ L L
Sbjct: 164 GTAR-ILHDTPDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLKVVDDALNYLLPL 222
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ G+ RDE V R +P++ + GGY K
Sbjct: 223 YQPDLVLYDAGVDVHKDDALGYLKLTDAGVAARDESVMRHCLGRDIPVMGVIGGGYSKD 281
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ A AL G + ++ GG HHA GFC + D++++ L S ++ +I D
Sbjct: 98 GSILAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|407939445|ref|YP_006855086.1| histone deacetylase [Acidovorax sp. KKS102]
gi|407897239|gb|AFU46448.1| histone deacetylase [Acidovorax sp. KKS102]
Length = 310
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 127/293 (43%), Gaps = 28/293 (9%)
Query: 119 YNVHF-FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIA 177
Y HF L + H F K++ + + + +H+ +++ E S+E L
Sbjct: 5 YADHFVLPLPEGHRFPMAKYRMLRDRIAEHLPGAVLK----------EALPASDEALARV 54
Query: 178 HTEKYLKSLK-WSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGW 236
H+ +Y+ ++ + AA E+ + R VG TL A A R G
Sbjct: 55 HSPQYINAVDHGTLAPAAQREI-------GFPWSPAMAERARRSVGATLAATRAAWREGV 107
Query: 237 SINIGGGFHHASETKGGGFCAYADISLLV------KLLFQSKSISTAMIVDLDAHQGNGY 290
+ N+ GG HH+ KG GFC + D+++ L S ++DLD HQGNG
Sbjct: 108 AGNLAGGTHHSYADKGSGFCVFNDVAVAARQAQADHLNDGSGWPLQVAVIDLDVHQGNGT 167
Query: 291 EKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
F + +F + KE +EL D YL ++ LE P
Sbjct: 168 AHIFQGDDSVFTLSLHGARNFPFRKEPSDLDVELPDGCADDEYLHALDQALETLDHRCKP 227
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
D++ Y AG D + D LG LA++ G+ RD VF A +RR+P V + +GGY
Sbjct: 228 DLVFYLAGADPHVGDRLGRLAVTHDGLEARDRRVFDWAWQRRIPTVFVMAGGY 280
Score = 38.1 bits (87), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLV------KLLFQSKSISTA 58
TL A A R G + N+ GG HH+ KG GFC + D+++ L S
Sbjct: 95 TLAATRAAWREGVAGNLAGGTHHSYADKGSGFCVFNDVAVAARQAQADHLNDGSGWPLQV 154
Query: 59 MIVDLDAHQ 67
++DLD HQ
Sbjct: 155 AVIDLDVHQ 163
>gi|269965988|ref|ZP_06180080.1| histone deacetylase/AcuC/AphA family protein [Vibrio alginolyticus
40B]
gi|269829384|gb|EEZ83626.1| histone deacetylase/AcuC/AphA family protein [Vibrio alginolyticus
40B]
Length = 307
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 140/300 (46%), Gaps = 15/300 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P +Y P Y+ +L + H + K++ YL++ + ++ + + +P+ ++
Sbjct: 3 PFIYHPIYSQ--LELPEGHRYPIMKYQ----YLYESVLVHMEKDNWKEHTQFFQPEALTV 56
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
++ H E+Y++ L S N+ A + P + + R + G L A A
Sbjct: 57 GEVKRVHDEEYVE-LLVSGNMPAAK--MRRIGFP--WSESLITRTLTSAAGTALTAK-KA 110
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G +I++ GG+HHA + G GFC + D+ + + + + + +I+D D H G+G
Sbjct: 111 LEYGVAIHLSGGYHHAHKEFGSGFCLFNDLVIAARQALEVEHVDKVLIIDSDVHHGDGTA 170
Query: 292 KDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
+E I + C + K + L T D+ +L + ++ +L PD
Sbjct: 171 TLCDDEPDIITLSFHCDKNFPARKPQSDLDVPLVRGTGDEDFLMAFKEVVDMALNLHRPD 230
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
+++Y+AG D+ +D LG +S QGI+ RD + + R +P+ + GGY A ++
Sbjct: 231 LVIYDAGVDIHQDDELGYFDVSTQGILERDRFLMQTVKSRGIPVAAVVGGGYRTNHADLV 290
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT AL G +I++ GG+HHA + G GFC + D+ + + + + + +I+D
Sbjct: 102 GTALTAKKALEYGVAIHLSGGYHHAHKEFGSGFCLFNDLVIAARQALEVEHVDKVLIIDS 161
Query: 64 DAHQ 67
D H
Sbjct: 162 DVHH 165
>gi|209523626|ref|ZP_03272180.1| histone deacetylase superfamily [Arthrospira maxima CS-328]
gi|423065918|ref|ZP_17054708.1| histone deacetylase superfamily [Arthrospira platensis C1]
gi|209496031|gb|EDZ96332.1| histone deacetylase superfamily [Arthrospira maxima CS-328]
gi|406712676|gb|EKD07860.1| histone deacetylase superfamily [Arthrospira platensis C1]
Length = 305
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 93/191 (48%), Gaps = 3/191 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
VGG + LAL G + N GG HHA G GFC + DI++ ++ + +IV
Sbjct: 96 VGGAILTAKLALSHGLACNTAGGTHHAFPNYGSGFCIFNDIAIAACVMQKLGLAKKILIV 155
Query: 281 DLDAHQGNGYEKDFMNETRIFI--METCITSKAKEAIRCR-IELAPYTEDQHYLEKIEAG 337
DLD HQG+ F + +F M AK+ R I LA ED+ YL+ + +
Sbjct: 156 DLDVHQGDATAVIFQDNPHVFTFSMHCQANFPAKKQTSDRDIPLAVGMEDEEYLQILASH 215
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L L F PD+++Y+AG D + D LG LA++ G+ RR+ V P+ +
Sbjct: 216 LPDLLTEFRPDLVIYDAGVDTHIGDRLGKLALTDSGLWRREMQVLSTCVGMGYPVAGIIG 275
Query: 398 GGYLKQTARII 408
GGY + ++
Sbjct: 276 GGYCEDMQSLV 286
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 26/159 (16%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G + LAL G + N GG HHA G GFC + DI++ ++ + +IVDL
Sbjct: 98 GAILTAKLALSHGLACNTAGGTHHAFPNYGSGFCIFNDIAIAACVMQKLGLAKKILIVDL 157
Query: 64 DAHQ-------FSDYYFPSAHSIKRKRKVEFLKERK----------ALEDE----ITSEP 102
D HQ F D P + + F +++ +EDE I +
Sbjct: 158 DVHQGDATAVIFQDN--PHVFTFSMHCQANFPAKKQTSDRDIPLAVGMEDEEYLQILASH 215
Query: 103 QESVVT--RPWPIVYRPEYNVHFF-KLEKLHPFDSKKWK 138
++T RP ++Y + H +L KL DS W+
Sbjct: 216 LPDLLTEFRPDLVIYDAGVDTHIGDRLGKLALTDSGLWR 254
>gi|297565408|ref|YP_003684380.1| histone deacetylase [Meiothermus silvanus DSM 9946]
gi|296849857|gb|ADH62872.1| Histone deacetylase [Meiothermus silvanus DSM 9946]
Length = 378
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 146/342 (42%), Gaps = 44/342 (12%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y + F E HPF ++ + + L Y V A + Q +
Sbjct: 4 PVLYHPAYKTYTFGPE--HPFSPRRLEMLTALL--EALGYPVGASSL--------QPATR 51
Query: 172 EQLLIAHTEKYLKSLKWSF--NVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGF 229
E +L+ H E+ ++ ++ VAA +E L + + R+ VGGTLEA
Sbjct: 52 EDILMVHAERLVRRVEGCSVGEVAADAEHYGL-GTADTPIFPGMDEATRWLVGGTLEAAR 110
Query: 230 LALRRGWS--INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQG 287
+ LR + +GGG HHA + GFC Y D+S+ ++ L ++S +D+D H G
Sbjct: 111 MILRGEAQEVLQLGGGLHHAQYDRSSGFCVYNDLSVAIRHL--TRSGLRVAYLDIDVHHG 168
Query: 288 NGYEKDFMNETRIFIMETC---------------ITSKAKEAIRCRIELAPYTEDQHYLE 332
+G + +E + + I A + + L P+T+D+ YLE
Sbjct: 169 DGVQWIHYDEAEVLTLSFHESGRYLFPGTGAIYEIGKGAGLGRKLNVPLEPFTQDESYLE 228
Query: 333 KIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE----- 387
EA LE +L F PD++V G D DPL L +S Q + +F++ RE
Sbjct: 229 VFEAVLEPALAWFRPDVMVIQCGADAHFLDPLADLVLSTQAYQK----LFLRMREYVREF 284
Query: 388 RRVPIVMLTSGGY-LKQTARIIADSILNLADLGLISRPYNIW 428
V GGY L T RI A L L L R W
Sbjct: 285 SGGKAVYTLGGGYSLDATTRIWAMLYLLLQGHPLPDRLPEAW 326
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 4 GTLEAGFLALRRGWS--INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTLEA + LR + +GGG HHA + GFC Y D+S+ ++ L ++S +
Sbjct: 104 GTLEAARMILRGEAQEVLQLGGGLHHAQYDRSSGFCVYNDLSVAIRHL--TRSGLRVAYL 161
Query: 62 DLDAHQ 67
D+D H
Sbjct: 162 DIDVHH 167
>gi|90411556|ref|ZP_01219566.1| Histone deacetylase/AcuC/AphA family protein [Photobacterium
profundum 3TCK]
gi|90327446|gb|EAS43799.1| Histone deacetylase/AcuC/AphA family protein [Photobacterium
profundum 3TCK]
Length = 304
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 124/292 (42%), Gaps = 16/292 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y+ L H + K++ ++ YL N + T +P ++
Sbjct: 3 PLVYHPIYSQ--LDLPPAHRYPISKYRRLYQYL-----NDSLPIDKQTSVKFHQPNTLTS 55
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ + H Y+ +L N + + P + Q+ R + G L LA
Sbjct: 56 DNIKRLHNSDYVDAL---INNTLPAAKMRRIGFP--WSQQLIDRTLMSTAGTQLTVE-LA 109
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
+ G +I++ GG+HHA G GFC + D++L + MIVD D H G+G
Sbjct: 110 HQHGIAIHLSGGYHHAHHDFGSGFCLFNDLALAAHHALTLNGVDKVMIVDCDVHHGDGTA 169
Query: 292 KDFMNETRIFIMET-CITSKAKEAIRCRIELA--PYTEDQHYLEKIEAGLERSLRSFCPD 348
I C + I+LA T + YL+ +A +L PD
Sbjct: 170 TLLAKHDDIITFSVHCDKNFPARKPDSDIDLALPKNTSSKDYLDTFKAIYTLALAQHQPD 229
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
+++Y+AG D+ +D LG A+ +G+ +RD VF + +P+ + GGY
Sbjct: 230 LVLYDAGVDIHKDDELGYFAVCQEGLYQRDHFVFSTCEQENIPVAAVIGGGY 281
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 11 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
LA + G +I++ GG+HHA G GFC + D++L + MIVD D H
Sbjct: 108 LAHQHGIAIHLSGGYHHAHHDFGSGFCLFNDLALAAHHALTLNGVDKVMIVDCDVHH 164
>gi|145589710|ref|YP_001156307.1| histone deacetylase superfamily protein [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145048116|gb|ABP34743.1| histone deacetylase superfamily [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 299
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 115/247 (46%), Gaps = 16/247 (6%)
Query: 164 IEPQEVSEEQLLIAHTEKYL-KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
IE S+ Q+L H +YL K ++ + E+ +V V++ R G
Sbjct: 40 IEAPAASDTQILYCHDPQYLIKVIEGKLSPQEQKEIGFPWSVK--MVERS-----RRSAG 92
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM---I 279
T+ A AL G + N+ GG HHA G GFC + D ++ + L K IS + +
Sbjct: 93 ATVAAAKTALEEGIAANLAGGTHHAYRAIGSGFCVFNDSAIAARTL--QKEISPHLKIAV 150
Query: 280 VDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEA 336
+DLD HQGNG N+ IF + + KE + L ED+ YL +
Sbjct: 151 IDLDVHQGNGTAAILQNDPSIFTLSIHGENNFPFKKEQSDLDLGLPDGCEDKLYLNALCK 210
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
LE F D I+Y AG D D LG L +S +G+ +RDE VF A +R++ +
Sbjct: 211 ALEELESRFKADCIIYLAGADPHEGDRLGRLNLSKEGMRQRDETVFQFALDRKLSVAFSM 270
Query: 397 SGGYLKQ 403
+GGY K+
Sbjct: 271 AGGYGKE 277
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM---IV 61
T+ A AL G + N+ GG HHA G GFC + D ++ + L K IS + ++
Sbjct: 94 TVAAAKTALEEGIAANLAGGTHHAYRAIGSGFCVFNDSAIAARTL--QKEISPHLKIAVI 151
Query: 62 DLDAHQ 67
DLD HQ
Sbjct: 152 DLDVHQ 157
>gi|428301891|ref|YP_007140197.1| histone deacetylase [Calothrix sp. PCC 6303]
gi|428238435|gb|AFZ04225.1| Histone deacetylase [Calothrix sp. PCC 6303]
Length = 303
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 131/315 (41%), Gaps = 50/315 (15%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PI+Y P+Y +L + H F K+ +++ L + + +P +
Sbjct: 4 PIIYHPDY---VTELPEGHRFPMAKFSLLYDLL--------LADGVAKSEQFYQPTIPQQ 52
Query: 172 EQLLIAHTEKYLKS---------------LKWSFNVAAISEVCPLVAVPNYFVQKCYLRP 216
+ + + HT +Y+ + L WS + ++ C V
Sbjct: 53 DLIELIHTPEYVNAYCQGTLDEKAQRRIGLPWSRGL--VNRTCTAV-------------- 96
Query: 217 MRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST 276
GGT+ AL G + N GG HHA G GFC + D+++ ++L +
Sbjct: 97 -----GGTILTAQKALECGLACNTAGGTHHAFPDYGSGFCIFNDLAIACRVLQRQHLAKR 151
Query: 277 AMIVDLDAHQGNGYEKDFMNETRIFIMET-CITS--KAKEAIRCRIELAPYTEDQHYLEK 333
+IVDLD HQG+G F ++ +F C + K+ + L ED YL+
Sbjct: 152 ILIVDLDVHQGDGTAFIFQDDDSVFTFSMHCEVNFPGTKQKSDLDVPLPVGMEDDAYLQT 211
Query: 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIV 393
+ + L L PDI++Y+AG D + D LG LA++ GI RR+ V + P+
Sbjct: 212 LASYLPDLLSQVKPDIVLYDAGVDPHIGDKLGKLALTDSGIFRREMQVLSTCVSQGYPVA 271
Query: 394 MLTSGGYLKQTARII 408
+ GGY ++
Sbjct: 272 CVIGGGYADDMKSLV 286
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ AL G + N GG HHA G GFC + D+++ ++L + +IVDL
Sbjct: 98 GTILTAQKALECGLACNTAGGTHHAFPDYGSGFCIFNDLAIACRVLQRQHLAKRILIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|357974943|ref|ZP_09138914.1| histone deacetylase superfamily protein [Sphingomonas sp. KC8]
Length = 304
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 117/259 (45%), Gaps = 14/259 (5%)
Query: 165 EPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGT 224
EP+ + E + H Y+ + + V E AV + ++ L P GGT
Sbjct: 43 EPEPMPREWIAAVHDADYVDQV-IAACVPPEKERRIGFAVTPHVARRAQLVP-----GGT 96
Query: 225 LEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDA 284
A LAL G++ N GG HHA G G+C + D+++ L MIVDLD
Sbjct: 97 WLAAKLALAHGFAANSAGGSHHALADTGAGYCVFNDLAITANRLIAQGDAKRVMIVDLDV 156
Query: 285 HQGNGYEKDFMNETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEK----IEAGLER 340
HQG+G +F + + K A + R L D ++A L+
Sbjct: 157 HQGDGTAILMAGRDDVFTL-SIHADKNFPARKARSSLDAALADGADDAAYLAVLDAHLDP 215
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
++ F PD+I+Y AG D + D LG LA+S G+ RD V + AR R VP+ + GGY
Sbjct: 216 AIDGFQPDLILYQAGVDPHIEDRLGRLALSDAGLAARDVRVMVAARMRGVPLASVLGGGY 275
Query: 401 LKQ---TARIIADSILNLA 416
+ AR A SI+ LA
Sbjct: 276 GEDRMAVARRHARSIITLA 294
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A LAL G++ N GG HHA G G+C + D+++ L MIVDL
Sbjct: 95 GTWLAAKLALAHGFAANSAGGSHHALADTGAGYCVFNDLAITANRLIAQGDAKRVMIVDL 154
Query: 64 DAHQ 67
D HQ
Sbjct: 155 DVHQ 158
>gi|148655721|ref|YP_001275926.1| histone deacetylase superfamily protein [Roseiflexus sp. RS-1]
gi|148567831|gb|ABQ89976.1| histone deacetylase superfamily [Roseiflexus sp. RS-1]
Length = 298
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 118/257 (45%), Gaps = 20/257 (7%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEV-CPLVAVP--NYFVQKCYLRPMRY 219
+I P + +L AHT YL ++ + A+S+ + P + V++ R
Sbjct: 39 LIVPAAADDRDILRAHTADYLHRIQ----IGAMSDREMRQIGFPWSPHLVERS-----RR 89
Query: 220 HVGGTLEAGFLALR-RGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
VG T+ A AL G + ++ GG HHA G G+C + D + +++ + +
Sbjct: 90 SVGATIAACRTALSGDGIAASLAGGTHHAFADHGEGYCVFNDSVIAARVMQAEGRVRRVV 149
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIE 335
I+D D HQGNG + IF KE I L T D YL +E
Sbjct: 150 IIDCDVHQGNGIAAILAGDETIFSFSIHGAKNYPFRKERSNLDIALEDGTGDAVYLAALE 209
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
GL +++ C D+ +Y AG D +D LG L ++ G++ RD +V R +P+ +
Sbjct: 210 QGLYQAIEQSCADLAIYLAGADPYEDDRLGRLKVTKMGLLERDRMVLEACRSAGIPVAIT 269
Query: 396 TSGGYLKQTARIIADSI 412
+GGY AR IAD++
Sbjct: 270 MAGGY----ARNIADTV 282
Score = 38.5 bits (88), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 16 GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
G + ++ GG HHA G G+C + D + +++ + +I+D D HQ
Sbjct: 106 GIAASLAGGTHHAFADHGEGYCVFNDSVIAARVMQAEGRVRRVVIIDCDVHQ 157
>gi|409990645|ref|ZP_11273991.1| histone deacetylase superfamily protein [Arthrospira platensis str.
Paraca]
gi|409938497|gb|EKN79815.1| histone deacetylase superfamily protein [Arthrospira platensis str.
Paraca]
Length = 305
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 131/301 (43%), Gaps = 22/301 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIV+ P+Y L H F K F L + L+E I + + P+
Sbjct: 4 PIVFHPDY---VAPLPPGHRFPMPK----FGLLC----DMLLEEGVIRRSQLHLPKLPPT 52
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
E + + H Y+K + + + A + L P + C VGG + L
Sbjct: 53 EWIELVHHRDYVKGYCEGTLDPKAQRRIG-LPWSPALAQRTCIA------VGGAILTAKL 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G + N GG HHA G GFC + D+++ ++ + +IVDLD HQG+
Sbjct: 106 ALSHGLACNTAGGTHHAFPNYGSGFCIFNDMAIAACVMQKLGLAKKILIVDLDVHQGDAT 165
Query: 291 EKDFMNETRIFI--METCITSKAKEAIRCR-IELAPYTEDQHYLEKIEAGLERSLRSFCP 347
F + +F M AK+ R I LA ED+ YL+ + + L L F P
Sbjct: 166 AVIFQDNPHVFTFSMHCQANFPAKKQTSDRDIPLAVGMEDEEYLQILASHLPDLLTEFRP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D+++Y+AG D + D LG LA++ G+ RR+ V P+ + GGY + +
Sbjct: 226 DLVIYDAGVDPHIGDRLGKLALTDSGLWRREMQVLSTCVGMGYPVAGIIGGGYCEDMQGL 285
Query: 408 I 408
+
Sbjct: 286 V 286
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G + LAL G + N GG HHA G GFC + D+++ ++ + +IVDL
Sbjct: 98 GAILTAKLALSHGLACNTAGGTHHAFPNYGSGFCIFNDMAIAACVMQKLGLAKKILIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|121604519|ref|YP_981848.1| histone deacetylase superfamily protein [Polaromonas
naphthalenivorans CJ2]
gi|120593488|gb|ABM36927.1| histone deacetylase superfamily [Polaromonas naphthalenivorans CJ2]
Length = 333
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 11/177 (6%)
Query: 235 GWSINIGGGFHHASETKGGGFCAYADISLLVKLL--------FQSKSISTAMIVDLDAHQ 286
G + N+ GG HHA KGGGFC + D ++ +L+ Q++ ++DLD HQ
Sbjct: 128 GIAANLAGGTHHAYAHKGGGFCVFNDAAVAARLMQAEWARQHRQARQPLQVAVIDLDVHQ 187
Query: 287 GNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
GNG F + +F + KEA +EL D YL+ +E L+ R
Sbjct: 188 GNGTASIFAGDASVFTLSLHGEKNFPFRKEASDLDVELPDGCLDAPYLQALEHALDELER 247
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
F P ++++ AG D D LG L++S G+ RD VF A +RR+P+ +GGY
Sbjct: 248 RFEPGLVLFLAGADPFAGDRLGRLSLSFDGLEARDRRVFDWAWQRRIPLAFSMAGGY 304
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 16 GWSINIGGGFHHASETKGGGFCAYADISLLVKLL--------FQSKSISTAMIVDLDAHQ 67
G + N+ GG HHA KGGGFC + D ++ +L+ Q++ ++DLD HQ
Sbjct: 128 GIAANLAGGTHHAYAHKGGGFCVFNDAAVAARLMQAEWARQHRQARQPLQVAVIDLDVHQ 187
>gi|421090451|ref|ZP_15551243.1| histone deacetylase family protein [Leptospira kirschneri str.
200802841]
gi|410000665|gb|EKO51293.1| histone deacetylase family protein [Leptospira kirschneri str.
200802841]
Length = 271
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 115/246 (46%), Gaps = 14/246 (5%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
I +P + L + HT+++L F I+E +P + K + VG
Sbjct: 17 IYKPDLAKTKDLSLVHTQEFLDD----FFSLKITERTQYSELP---LTKQIVHSFVLAVG 69
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
GT+ + L + + +IGGGFHH+ + GFC D ++ KL + + +DL
Sbjct: 70 GTILSMELTQKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIASKLYQKEYPGKKILFIDL 129
Query: 283 DAHQGNGYEKDFMNETRIFI--METCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLER 340
D HQGNG F ++ +F M KE I L T+D+ YLE ++ L +
Sbjct: 130 DLHQGNGNSFVFQDDPDVFTFSMHQENLYPKKEKSDLDISLEEGTDDKEYLELLKKSLHK 189
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV---FMKARERRVPIVMLTS 397
F PD+I Y AG D D LG L ++ QG+ +RD+++ + RV V+L +
Sbjct: 190 IESDFKPDLIFYIAGADPFEGDSLGDLKLTFQGLRKRDQIIRDFVYSLNDTRV--VILPA 247
Query: 398 GGYLKQ 403
GGY K
Sbjct: 248 GGYAKD 253
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ + L + + +IGGGFHH+ + GFC D ++ KL + + +DL
Sbjct: 70 GTILSMELTQKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIASKLYQKEYPGKKILFIDL 129
Query: 64 DAHQ 67
D HQ
Sbjct: 130 DLHQ 133
>gi|312963190|ref|ZP_07777675.1| histone deacetylase superfamily [Pseudomonas fluorescens WH6]
gi|311282701|gb|EFQ61297.1| histone deacetylase superfamily [Pseudomonas fluorescens WH6]
Length = 306
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 139/299 (46%), Gaps = 24/299 (8%)
Query: 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEV 169
P P++Y +Y+ F E P D ++ + ++LV++ ++ P
Sbjct: 2 PLPLIYHDDYSPEF-PAEHRFPMDK----------FRLLRDHLVDSGLTLDSQLLRPPLC 50
Query: 170 SEEQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAG 228
+ L +AH Y++ + +S E + +P + + R +R VGG++ A
Sbjct: 51 PPQILALAHEPGYIER----YMSGELSREDQRRLGLP--WSEALARRTVRA-VGGSILAA 103
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
AL G + ++ GG HHA GFC + D++++ L S ++ +I D D HQG+
Sbjct: 104 EQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDCDVHQGD 163
Query: 289 GYEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRS 344
G + +++T I + K A + + I L D YL+ ++ L L
Sbjct: 164 GTAR-ILHDTPEAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLKVVDDALNYLLPL 222
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD+++Y+AG DV +D LG L ++ G+ RDE V R +P++ + GGY K
Sbjct: 223 YQPDLVLYDAGVDVHKDDALGYLKLTDAGVAARDESVMRHCLGRDIPVMGVIGGGYSKD 281
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ A AL G + ++ GG HHA GFC + D++++ L S ++ +I D
Sbjct: 98 GSILAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|149185536|ref|ZP_01863852.1| hypothetical protein ED21_20964 [Erythrobacter sp. SD-21]
gi|148830756|gb|EDL49191.1| hypothetical protein ED21_20964 [Erythrobacter sp. SD-21]
Length = 313
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 90/184 (48%), Gaps = 7/184 (3%)
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 281
GGT A LA G++ N G HHA G G+C + D+++ L +IVD
Sbjct: 94 GGTWLAAQLARPHGYAANSAAGSHHALFDTGAGYCVFNDLAVAANRLIAEGDAERILIVD 153
Query: 282 LDAHQGNGYEKDFMNETRIFIM-----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEA 336
LD HQG+G +F + + KA+ ++ + LA +D YL+ ++
Sbjct: 154 LDVHQGDGTASLTATRDDVFTLSLHAEKNFPVRKARSSLD--VPLADGIDDDGYLDALDR 211
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
L + L SF PD+++Y AG DV +D LG + +S +G+ RRD V R R P+
Sbjct: 212 HLPQVLASFDPDLVLYQAGVDVHGDDRLGRINLSDEGLDRRDAYVVQAVRSRGAPLASSL 271
Query: 397 SGGY 400
GGY
Sbjct: 272 GGGY 275
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A LA G++ N G HHA G G+C + D+++ L +IVDL
Sbjct: 95 GTWLAAQLARPHGYAANSAAGSHHALFDTGAGYCVFNDLAVAANRLIAEGDAERILIVDL 154
Query: 64 DAHQ 67
D HQ
Sbjct: 155 DVHQ 158
>gi|291570560|dbj|BAI92832.1| histone deacetylase family protein [Arthrospira platensis NIES-39]
Length = 305
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 131/301 (43%), Gaps = 22/301 (7%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIV+ P+Y L H F K F L + L+E I + + P+
Sbjct: 4 PIVFHPDY---VAPLPPGHRFPMPK----FGLLC----DMLLEEGVIRRSQLHLPKLPPT 52
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
E + + H Y+K + + + A + L P + C VGG + L
Sbjct: 53 EWIELVHHRDYVKGYCEGTLDPKAQRRIG-LPWSPALAQRTCIA------VGGAILTAKL 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G + N GG HHA G GFC + D+++ ++ + +IVDLD HQG+
Sbjct: 106 ALSHGLACNTAGGTHHAFPNYGSGFCIFNDMAIAACVMQKLGLAKKILIVDLDVHQGDAT 165
Query: 291 EKDFMNETRIFI--METCITSKAKEAIRCR-IELAPYTEDQHYLEKIEAGLERSLRSFCP 347
F + +F M AK+ R I LA ED+ YL+ + + L L F P
Sbjct: 166 AVIFQDNPHVFTFSMHCQANFPAKKQTSDRDIPLAVGMEDEEYLQILASHLPDLLTEFRP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D+++Y+AG D + D LG LA++ G+ RR+ V P+ + GGY + +
Sbjct: 226 DLVIYDAGVDPHIGDRLGKLALTDSGLWRREMQVLSTCVGMGYPVAGIIGGGYCEDMHGL 285
Query: 408 I 408
+
Sbjct: 286 V 286
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G + LAL G + N GG HHA G GFC + D+++ ++ + +IVDL
Sbjct: 98 GAILTAKLALSHGLACNTAGGTHHAFPNYGSGFCIFNDMAIAACVMQKLGLAKKILIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|418695445|ref|ZP_13256465.1| histone deacetylase family protein [Leptospira kirschneri str. H1]
gi|421108114|ref|ZP_15568658.1| histone deacetylase family protein [Leptospira kirschneri str. H2]
gi|409956899|gb|EKO15820.1| histone deacetylase family protein [Leptospira kirschneri str. H1]
gi|410006815|gb|EKO60552.1| histone deacetylase family protein [Leptospira kirschneri str. H2]
Length = 271
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 114/244 (46%), Gaps = 10/244 (4%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
I +P + L + HT+++L F I+E +P + K + VG
Sbjct: 17 IYKPDLAKTKDLSLVHTQEFLDD----FFSLKITERTQYSELP---LTKQIVHSFVLAVG 69
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
GT+ + L + + +IGGGFHH+ + GFC D ++ KL + + +DL
Sbjct: 70 GTILSMELTQKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIASKLYQKEYPGKKILFIDL 129
Query: 283 DAHQGNGYEKDFMNETRIFI--METCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLER 340
D HQGNG F ++ +F M KE I L T+D+ YLE +E L +
Sbjct: 130 DLHQGNGNSFIFQDDPDVFTFSMHQENLYPKKEKSDLDISLEEGTDDKEYLELLEKSLHK 189
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE-RRVPIVMLTSGG 399
F PD+I Y AG D D LG L ++ QG+ +R++++ A +V+L +GG
Sbjct: 190 IESDFKPDLIFYIAGADPFEGDSLGDLKLTFQGLRKREQIIRDFAYSLNDTRVVILPAGG 249
Query: 400 YLKQ 403
Y K
Sbjct: 250 YAKD 253
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ + L + + +IGGGFHH+ + GFC D ++ KL + + +DL
Sbjct: 70 GTILSMELTQKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIASKLYQKEYPGKKILFIDL 129
Query: 64 DAHQ 67
D HQ
Sbjct: 130 DLHQ 133
>gi|669045|emb|CAA78369.1| Portion of hypothetical protein [Synechococcus sp. PCC 7002]
Length = 278
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 90/185 (48%), Gaps = 3/185 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
VGGT+ LAL G + N GG HHA G GFC D+++ + + Q +IV
Sbjct: 74 VGGTILTAQLALEHGLACNTAGGTHHAFPGYGSGFCILNDLAIATRTIQQRGLAQRILIV 133
Query: 281 DLDAHQGNGYEKDFMNETRIFIMET-CITSKAKEAIRCRIELA--PYTEDQHYLEKIEAG 337
DLD HQG+G F ++ +F C + + R ++L +D YL+ +
Sbjct: 134 DLDVHQGDGTAFIFQDDPTVFTFSMHCEVNFPSQKQRSDLDLGLPEGLDDDGYLQILAHH 193
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
LE L PD++ Y+AG D + D LG LA++ G+ RR+ LV P+ +
Sbjct: 194 LEDLLSQVKPDLVFYDAGVDTHVGDRLGKLAMTNTGLYRRERLVLSTCLAAGYPVACVIG 253
Query: 398 GGYLK 402
GGY K
Sbjct: 254 GGYAK 258
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G + N GG HHA G GFC D+++ + + Q +IVDL
Sbjct: 76 GTILTAQLALEHGLACNTAGGTHHAFPGYGSGFCILNDLAIATRTIQQRGLAQRILIVDL 135
Query: 64 DAHQFSDYYF-----PSAHSIKRKRKVEFLKERK 92
D HQ F P+ + +V F +++
Sbjct: 136 DVHQGDGTAFIFQDDPTVFTFSMHCEVNFPSQKQ 169
>gi|387895767|ref|YP_006326064.1| histone deacetylase family protein [Pseudomonas fluorescens A506]
gi|387163772|gb|AFJ58971.1| histone deacetylase family protein [Pseudomonas fluorescens A506]
Length = 306
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 137/297 (46%), Gaps = 24/297 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y +Y+ F P D + F L H LV++ ++ P
Sbjct: 4 PLIYHEDYSPEF-------PADHRFPMDKFRLLRDH----LVDSGLTEDSQLLRPPLCPA 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAIS-EVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+ L +AH Y++ + +S E + +P + + R +R VGG++ A
Sbjct: 53 DILALAHEPGYIER----YMSGELSREDQRRLGLP--WSEALARRTVRA-VGGSILAAEQ 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G + ++ GG HHA GFC + D++++ L S ++ +I D D HQG+G
Sbjct: 106 ALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDCDVHQGDGT 165
Query: 291 EKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFC 346
+ +++T I + K A + + I L D YL+ ++ L L +
Sbjct: 166 AR-ILHDTPDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLKVVDDALNYLLPLYQ 224
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
PD+++Y+AG DV +D LG L ++ +G+ RDE V R +P++ + GGY K
Sbjct: 225 PDLVLYDAGVDVHKDDALGYLKLTDEGVAARDESVMRHCLGRDIPVMGVIGGGYSKD 281
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ A AL G + ++ GG HHA GFC + D++++ L S ++ +I D
Sbjct: 98 GSILAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|330814278|ref|YP_004358517.1| histone deacetylase [Candidatus Pelagibacter sp. IMCC9063]
gi|327487373|gb|AEA81778.1| histone deacetylase family protein [Candidatus Pelagibacter sp.
IMCC9063]
Length = 260
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 92/191 (48%), Gaps = 4/191 (2%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
GGT+ + LAL + N GG HHA G G+C + D+++ L S+ +I
Sbjct: 53 TGGTVLSAKLALSYKLACNTAGGSHHAFSDSGNGYCVFNDVAVAAYNLLNKHSVKKILIY 112
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAG 337
DLD HQG+G K F N +++ K+ +ELA D+ YL +
Sbjct: 113 DLDVHQGDGTAKIFENNDQVYTFSAHSKKNYPLVKQQSNQDLELADDITDEEYLNTVSKS 172
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
LE + D + Y AG D+ +D LG L I+ +GI +R+++V + ++P+ +
Sbjct: 173 LEL-VNKMNFDFVFYVAGVDIHKDDKLGKLNITTEGIEKREKMVINNFYKNKIPLCGVLG 231
Query: 398 GGYLKQTARII 408
GGY K ++
Sbjct: 232 GGYNKDFNHLV 242
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ + LAL + N GG HHA G G+C + D+++ L S+ +I DL
Sbjct: 55 GTVLSAKLALSYKLACNTAGGSHHAFSDSGNGYCVFNDVAVAAYNLLNKHSVKKILIYDL 114
Query: 64 DAHQ----------FSDYYFPSAHSIKRKRKVEFLKERK----ALEDEITSEPQESVVTR 109
D HQ Y SAHS K+ +K++ L D+IT E + V++
Sbjct: 115 DVHQGDGTAKIFENNDQVYTFSAHS---KKNYPLVKQQSNQDLELADDITDEEYLNTVSK 171
Query: 110 PWPIVYRPEYNVHFF 124
+V + ++ F+
Sbjct: 172 SLELVNKMNFDFVFY 186
>gi|389876264|ref|YP_006369829.1| histone deacetylase [Tistrella mobilis KA081020-065]
gi|388527048|gb|AFK52245.1| histone deacetylase [Tistrella mobilis KA081020-065]
Length = 300
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 114/256 (44%), Gaps = 15/256 (5%)
Query: 151 YLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFV 209
+L F + + P+ L AHT Y+ L + AI + V P
Sbjct: 27 HLDRGPFADRFRHVVPEPADAALLERAHTPDYVADVLACRLDPTAIRRIGVPVTPPVVMR 86
Query: 210 QKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF 269
VGGT+ A AL RG + N GG HHA G GFC + D+++
Sbjct: 87 ATAS-------VGGTVAAVEAALDRGIASNTAGGSHHAHAGFGAGFCVFNDVAVAACHAH 139
Query: 270 QSKSISTAMIVDLDAHQGNGYEKDFMNE--TRIFIMETC---ITSKAKEAIRCRIELAPY 324
+ +I+DLD HQG+G + ++ F M KA+ I IEL
Sbjct: 140 ATGRAGRVVIIDLDVHQGDGTARILEDQPWAVTFSMHGARNFPVRKARSTID--IELPDG 197
Query: 325 TEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMK 384
T D YL+++E L L + PD+++Y AG D +D LG LA++ +G+ R+ LV +
Sbjct: 198 TGDAAYLDQLEDALPGLLDAPRPDLVIYLAGVDPHRDDRLGRLALTDRGLAAREHLVLDR 257
Query: 385 ARERRVPIVMLTSGGY 400
R +P+ + GGY
Sbjct: 258 CLARGIPVATVLGGGY 273
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A AL RG + N GG HHA G GFC + D+++ + +I+DL
Sbjct: 93 GTVAAVEAALDRGIASNTAGGSHHAHAGFGAGFCVFNDVAVAACHAHATGRAGRVVIIDL 152
Query: 64 DAHQ 67
D HQ
Sbjct: 153 DVHQ 156
>gi|326796258|ref|YP_004314078.1| histone deacetylase superfamily protein [Marinomonas mediterranea
MMB-1]
gi|326547022|gb|ADZ92242.1| histone deacetylase superfamily [Marinomonas mediterranea MMB-1]
Length = 307
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 133/304 (43%), Gaps = 30/304 (9%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P V+ P Y++ F H F K++ + L E +T +N EP +S
Sbjct: 3 PFVFHPNYSIPF---PSNHRFPMSKFRLLAEQL--------SELGILTSENCFEPSPLSL 51
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAG 228
L+ AH + Y++ ++ E + +P + V+ R +R V GT+
Sbjct: 52 TALMRAHDKHYVQRFVRGQLTQKEEKE----IGLPWSEWLVE----RTLRA-VSGTILTA 102
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
LAL G + ++ GG HHA + G GFC + D+++ L MI+D D HQG+
Sbjct: 103 ELALDHGLACHLAGGTHHAHPSHGAGFCIFNDLAVASIDLIHRGLAKKVMILDCDVHQGD 162
Query: 289 GYEKDFMNETRIFIM-----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
G F N + + E K + + I L + + YL ++ L L
Sbjct: 163 GTVAFFTNRDDVIPVSWHCDENYPVDKHQGGV--NIALPKGADGKCYLSVLKETLPDLLL 220
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+ PD + Y+AG DV ++D LG L ++ + RD V + +P+ + GGY +Q
Sbjct: 221 RYSPDFVFYDAGADVHIDDRLGFLNLTDDDVRMRDRYVLETCLDLSLPVACVIGGGYDRQ 280
Query: 404 TARI 407
++
Sbjct: 281 EYKV 284
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G + ++ GG HHA + G GFC + D+++ L MI+D
Sbjct: 97 GTILTAELALDHGLACHLAGGTHHAHPSHGAGFCIFNDLAVASIDLIHRGLAKKVMILDC 156
Query: 64 DAHQ 67
D HQ
Sbjct: 157 DVHQ 160
>gi|226356660|ref|YP_002786400.1| histone deacetylase superfamily protein [Deinococcus deserti
VCD115]
gi|226318650|gb|ACO46646.1| putative histone deacetylase superfamily [Deinococcus deserti
VCD115]
Length = 303
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 89/194 (45%), Gaps = 3/194 (1%)
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
R GG+L A AL GW N+ GG HHA + GFC D ++L +
Sbjct: 95 RRAAGGSLAALHDALAVGWGGNLAGGTHHAFHDRAEGFCLVNDAAILTRFALDEGLARRV 154
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
+VDLD HQGNG E + F + KE + L D YLE +
Sbjct: 155 AVVDLDVHQGNGTAALLRAEPQAFTLSIHGERNYPFRKEQSSLDLGLGDGVTDAEYLEVL 214
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
+L +F PD+++Y AG DVL D G A++ G+ R+ +V A+ +P+V
Sbjct: 215 RTRALPALDAFRPDLLLYLAGADVLAGDRFGRFALTLSGVRERNRVVLSWAQAAGIPVVT 274
Query: 395 LTSGGYLKQTARII 408
+ +GGY + A I
Sbjct: 275 MMAGGYNQDHALTI 288
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 14/129 (10%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL GW N+ GG HHA + GFC D ++L + +VDL
Sbjct: 100 GSLAALHDALAVGWGGNLAGGTHHAFHDRAEGFCLVNDAAILTRFALDEGLARRVAVVDL 159
Query: 64 DAHQFSDYYF-----PSAH--SIKRKRKVEFLKERKALE----DEIT-SEPQESVVTRPW 111
D HQ + P A SI +R F KE+ +L+ D +T +E E + TR
Sbjct: 160 DVHQGNGTAALLRAEPQAFTLSIHGERNYPFRKEQSSLDLGLGDGVTDAEYLEVLRTRAL 219
Query: 112 PIV--YRPE 118
P + +RP+
Sbjct: 220 PALDAFRPD 228
>gi|375266235|ref|YP_005023678.1| histone deacetylase/AcuC/AphA family protein [Vibrio sp. EJY3]
gi|369841555|gb|AEX22699.1| histone deacetylase/AcuC/AphA family protein [Vibrio sp. EJY3]
Length = 305
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 132/294 (44%), Gaps = 19/294 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y+ L + H + K+++++ + + + N +++ EP +S
Sbjct: 3 PLIYHPIYSK--LALPEGHRYPIMKYQYLYEAVQEKLENENSQSRV----QFFEPTALSV 56
Query: 172 EQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+ H +Y+ L S A + + + + + GT+
Sbjct: 57 ADIKRVHEAEYVDLLVSGSMPAAKMRRI-------GFPWSEALITRTLTSAAGTVLTAEK 109
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G ++++ GG+HHA G GFC + D+ + K + + +++D D H G+G
Sbjct: 110 ALEHGVALHLSGGYHHAHRDFGSGFCLFNDLVIAAKHMLDHDDVDKVLVIDSDVHHGDGT 169
Query: 291 EKDFMNETRI----FIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
E I F + ++ E+ + L T+D+ +L + ++ +L
Sbjct: 170 ATLCQEEPDIVTLSFHCDKNFPARKPES-DLDVPLVRGTDDETFLMTFKEVVQMALNLHR 228
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
PD+++Y+AG D+ +D LG +S QGI+ RD + +ER +P+ + GGY
Sbjct: 229 PDMVIYDAGVDIHTDDELGYFDVSTQGILERDRFLMQLMKERGIPVAAVVGGGY 282
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ AL G ++++ GG+HHA G GFC + D+ + K + + +++D
Sbjct: 102 GTVLTAEKALEHGVALHLSGGYHHAHRDFGSGFCLFNDLVIAAKHMLDHDDVDKVLVIDS 161
Query: 64 DAHQ 67
D H
Sbjct: 162 DVHH 165
>gi|409122167|ref|ZP_11221562.1| histone deacetylase [Gillisia sp. CBA3202]
Length = 325
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 113/253 (44%), Gaps = 9/253 (3%)
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
T++N EP+ +L H++ Y+ L + + P ++ R +
Sbjct: 39 TRENFFEPELPKISNVLAVHSQDYVADL---LELTVDKRAARKIGFP--LSEELIQRELI 93
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
GT++A AL G S+NI GG HHA + G FC D ++ + L + K I +
Sbjct: 94 I-AHGTMKACDHALNYGISMNIAGGTHHAYTSHGEAFCLLNDQAIAARYLQKKKGIKKIL 152
Query: 279 IVDLDAHQGNGYEKDFMNETRIF---IMETCITSKAKEAIRCRIELAPYTEDQHYLEKIE 335
IVDLD HQGNG + F + +F I S KE IEL T D+ YLE ++
Sbjct: 153 IVDLDVHQGNGTAEIFREDASVFTFSIHGKNNYSFRKETSDLDIELVDQTGDKDYLEVLK 212
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
L + PD I Y +G D+L D LG L + G RD V + +P+ +
Sbjct: 213 NTLPELINKVKPDFIFYLSGVDILATDKLGKLGCTIDGCKERDRYVLQTCHDLNIPVEVS 272
Query: 396 TSGGYLKQTARII 408
GGY + II
Sbjct: 273 MGGGYSPEIKMII 285
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 1 MEYGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMI 60
+ +GT++A AL G S+NI GG HHA + G FC D ++ + L + K I +I
Sbjct: 94 IAHGTMKACDHALNYGISMNIAGGTHHAYTSHGEAFCLLNDQAIAARYLQKKKGIKKILI 153
Query: 61 VDLDAHQ-------FSDYYFPSAHSIKRKRKVEFLKERKALEDEITSE 101
VDLD HQ F + SI K F KE L+ E+ +
Sbjct: 154 VDLDVHQGNGTAEIFREDASVFTFSIHGKNNYSFRKETSDLDIELVDQ 201
>gi|405356152|ref|ZP_11025172.1| Deacetylase [Chondromyces apiculatus DSM 436]
gi|397090748|gb|EJJ21589.1| Deacetylase [Myxococcus sp. (contaminant ex DSM 436)]
Length = 586
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 130/273 (47%), Gaps = 16/273 (5%)
Query: 151 YLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQ 210
YL+EA+ + ++ PQ V L H YL+SL +A I P
Sbjct: 49 YLLEARALRSRDVHHPQPVGFADLARVHDAAYLESLGQPETLARI-----FATDPAEIPV 103
Query: 211 KCYLRPMRYHVGGTLEAGFLALRRGWSI-NIGGGFHHASETKGGGFCAYADISLLVKLLF 269
L +R GGTL A LA+ RG + N+ GGFHHA+ +GGGFCA DI++ + L
Sbjct: 104 DALLSNLRRVCGGTLAAARLAVARGGPVVNMAGGFHHAAPARGGGFCAVNDIAVALAALH 163
Query: 270 QSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCIT---SKAKEAIRCRIELAPYTE 326
A+++DLDAH +G + + R +I + + A E R+ +T+
Sbjct: 164 ADGFEGQAVVLDLDAHPPDGTAECLAGQKRAWIGSLSGSDWGALAPEVDETRVPA--HTD 221
Query: 327 DQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKAR 386
D+ YL ++ L R R PD+ AG+DVL D G + +S G RRD V R
Sbjct: 222 DRTYLALLDGLLSRMPR---PDVAFVIAGSDVLEGDRFGRVGLSLDGARRRDRAVARALR 278
Query: 387 ERRVPIVMLTSGGYLKQTARIIADSILNLADLG 419
+P V L GGY + ++ A ++L LA G
Sbjct: 279 G--IPSVWLPGGGYHRDAWKVFAGTVLVLAGQG 309
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 19 INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAH 66
+N+ GGFHHA+ +GGGFCA DI++ + L A+++DLDAH
Sbjct: 132 VNMAGGFHHAAPARGGGFCAVNDIAVALAALHADGFEGQAVVLDLDAH 179
>gi|171463998|ref|YP_001798111.1| histone deacetylase superfamily protein [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|171193536|gb|ACB44497.1| histone deacetylase superfamily [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 299
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 115/253 (45%), Gaps = 16/253 (6%)
Query: 163 IIEPQEVSEEQLLIAHTEKYL-KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHV 221
++E ++ Q+L AH YL K + + + E+ + + R
Sbjct: 39 LVEVPPATDTQILYAHDPSYLIKIIDGTLSAQEQREI-------RFPWSTLMVERSRRSA 91
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM--- 278
G T+ A AL+ G + N+ GG HHA G GFC + D ++ + L K IS ++
Sbjct: 92 GATVAAAKTALKEGIASNLAGGTHHAYRDAGSGFCVFNDSAIADRTL--QKEISASLKIA 149
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIE 335
++DLD HQGNG N+ IF + KE + L D+ YL +
Sbjct: 150 VIDLDVHQGNGTASILQNDDSIFTPSIHGENNFPFKKEQSDLDLGLTDGCNDEIYLHSLS 209
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
L++ F D +++ AG D D LG L IS +G+ RDELVF A +R++ +
Sbjct: 210 QCLDQLDARFKADFLIFLAGADPHEGDCLGRLKISKKGMRLRDELVFQYALDRQLAVAFS 269
Query: 396 TSGGYLKQTARII 408
+GGY K+ I
Sbjct: 270 MAGGYGKEIESTI 282
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM---I 60
T+ A AL+ G + N+ GG HHA G GFC + D ++ + L K IS ++ +
Sbjct: 93 ATVAAAKTALKEGIASNLAGGTHHAYRDAGSGFCVFNDSAIADRTL--QKEISASLKIAV 150
Query: 61 VDLDAHQ 67
+DLD HQ
Sbjct: 151 IDLDVHQ 157
>gi|359786041|ref|ZP_09289183.1| histone deacetylase [Halomonas sp. GFAJ-1]
gi|359296636|gb|EHK60882.1| histone deacetylase [Halomonas sp. GFAJ-1]
Length = 304
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 124/291 (42%), Gaps = 20/291 (6%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
+V+ P Y + L HPF +K++ + L + +E + P+
Sbjct: 5 VVHHPGYTI---DLPANHPFPMEKFRLLRQLLGEQSLACPIE--------WLTPEPAPIN 53
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
L HT YL + +A +E A V++ +R GGTL AL
Sbjct: 54 TLARVHTRDYLNAFLQG-RLARAAERRSGFAWSEALVER-----VRLETGGTLLTLEAAL 107
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
G + N GG HHA G+C D+++ + +IVD D HQG+G +
Sbjct: 108 TSGLACNSAGGTHHAHADAASGYCLINDLAVAAAHALALGWVERVLIVDCDVHQGDGTAR 167
Query: 293 DFMNETRIFI--METCITSKAKEAIR-CRIELAPYTEDQHYLEKIEAGLERSLRSFCPDI 349
F N +F M A++A + L D YL ++ + L L ++ PD
Sbjct: 168 LFANVPGVFTFSMHAARNFPARKATSDLDVALPTGMGDDAYLAELASWLPGILAAYQPDA 227
Query: 350 IVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
++Y+AG DV +D LG LA+S QG+ RD V + +P+ + GGY
Sbjct: 228 VLYDAGVDVHQDDRLGYLALSNQGLYARDHYVLSCCHDADIPVAAVIGGGY 278
>gi|258621190|ref|ZP_05716224.1| histone deacetylase/AcuC/AphA family protein [Vibrio mimicus VM573]
gi|424807274|ref|ZP_18232682.1| histone deacetylase/AcuC/AphA family protein [Vibrio mimicus SX-4]
gi|258586578|gb|EEW11293.1| histone deacetylase/AcuC/AphA family protein [Vibrio mimicus VM573]
gi|342325216|gb|EGU20996.1| histone deacetylase/AcuC/AphA family protein [Vibrio mimicus SX-4]
Length = 306
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 136/301 (45%), Gaps = 16/301 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y+ L H + K++ ++ + + + ++ T N I PQ +
Sbjct: 3 PLIYHPIYSQ--LDLPVGHRYPINKYRLLYEEIVRQQEH---SEEWRTAFNFIAPQMAAL 57
Query: 172 EQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
++ H Y+++L + + A + + P + +K R + VGGT
Sbjct: 58 SLVMSVHDSDYVRALLEGTLPAAKMRRI----GFP--WSEKLIERTL-LSVGGTCLTVEQ 110
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G +I++ GG+HHA G GFC + D+++ + +I+D D H G+G
Sbjct: 111 ALLSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLSGVDKVLIIDSDVHHGDGT 170
Query: 291 EKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
I + C + K A IE T ++ +L +E ++ P
Sbjct: 171 ATLCAERDEIITLSFHCDKNFPARKPASDMDIEFTKQTGNEEFLSTFTQVVEMAVNLHQP 230
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D+I+Y+AG D+ +D LG L+IS I RRD + A++ +PI + GGY + A +
Sbjct: 231 DLILYDAGVDIHSDDELGYLSISQAAIARRDCFMLSLAKQSNIPIACVIGGGYRENHASL 290
Query: 408 I 408
+
Sbjct: 291 V 291
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL G +I++ GG+HHA G GFC + D+++ + +I+D D H
Sbjct: 111 ALLSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLSGVDKVLIIDSDVHH 166
>gi|404253657|ref|ZP_10957625.1| histone deacetylase superfamily protein [Sphingomonas sp. PAMC
26621]
Length = 300
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 8/188 (4%)
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 281
GGT AG +AL RG++ N GG HHA G G+C + D+++ L + + ++VD
Sbjct: 94 GGTWLAGKMALERGFAANTAGGSHHALAATGAGYCVFNDLAIAAVRLAEEDGLRV-LVVD 152
Query: 282 LDAHQGNGYEKDFMNETRIFIM-----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEA 336
D HQG+G +I + KA+ + + L T D YL +E+
Sbjct: 153 CDVHQGDGTAALTAGYPQIATYSIHAEKNFPVRKARSTLD--VGLPDATGDADYLATLES 210
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
L L P II+Y AG D L ND LG LA++ +G++ R+ LV A +R +P+
Sbjct: 211 TLGPMLDEVRPQIILYQAGIDPLANDRLGRLALTDEGLVARENLVARLAIDRGIPLASTV 270
Query: 397 SGGYLKQT 404
GGY T
Sbjct: 271 GGGYGADT 278
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT AG +AL RG++ N GG HHA G G+C + D+++ L + + ++VD
Sbjct: 95 GTWLAGKMALERGFAANTAGGSHHALAATGAGYCVFNDLAIAAVRLAEEDGLRV-LVVDC 153
Query: 64 DAHQ-------FSDYYFPSAHSIKRKRKVEFLKERKALE 95
D HQ + Y + +SI ++ K R L+
Sbjct: 154 DVHQGDGTAALTAGYPQIATYSIHAEKNFPVRKARSTLD 192
>gi|302826278|ref|XP_002994646.1| hypothetical protein SELMODRAFT_432551 [Selaginella moellendorffii]
gi|300137242|gb|EFJ04287.1| hypothetical protein SELMODRAFT_432551 [Selaginella moellendorffii]
Length = 314
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 64/84 (76%)
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
+ + ++F PD++VYNAGTD+L DPLG L +SP+G+ RDE+VF AR+R +PIVMLTS
Sbjct: 14 ISEAFQAFAPDLLVYNAGTDILEGDPLGRLEVSPEGVKERDEIVFSFARQRNIPIVMLTS 73
Query: 398 GGYLKQTARIIADSILNLADLGLI 421
GGY++ +A +IA+SI NL LI
Sbjct: 74 GGYMRSSAGVIAESISNLHSKKLI 97
>gi|395008638|ref|ZP_10392264.1| deacetylase, histone deacetylase/acetoin utilization protein
[Acidovorax sp. CF316]
gi|394313360|gb|EJE50408.1| deacetylase, histone deacetylase/acetoin utilization protein
[Acidovorax sp. CF316]
Length = 325
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 114/259 (44%), Gaps = 26/259 (10%)
Query: 169 VSEEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA 227
S+ +L +AHT Y+ ++ + A E+ + R VG T+ A
Sbjct: 46 ASDAELALAHTPAYIDAIANGTLPAPAQREI-------GFPWSPAMAERARRSVGATIAA 98
Query: 228 ----GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKS-ISTAM---- 278
G + N+ GG HHA KG GFC + D+++ +L+ + ++AM
Sbjct: 99 CRVAMAGGEGGGIAGNLAGGTHHAYADKGSGFCVFNDMAVAARLMQDEHARAASAMGANP 158
Query: 279 ------IVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQH 329
++DLD HQGNG + F + +F + KEA +EL D
Sbjct: 159 LALRVAVIDLDVHQGNGTARIFQGDDSVFTLSLHGARNFPFRKEAGDLDVELPDGCGDDE 218
Query: 330 YLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERR 389
YL +E L+ + F P +++Y AG D + D LG L +S G+ RD VF A +RR
Sbjct: 219 YLAALEQALDTLEQRFAPGLVLYLAGADPHVGDRLGRLHLSHDGLEARDRRVFDWAWQRR 278
Query: 390 VPIVMLTSGGYLKQTARII 408
VP+ GGY A I
Sbjct: 279 VPVAFAMGGGYGTDIADTI 297
Score = 41.2 bits (95), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 11/59 (18%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKS-ISTAM----------IVDLDAHQ 67
N+ GG HHA KG GFC + D+++ +L+ + ++AM ++DLD HQ
Sbjct: 114 NLAGGTHHAYADKGSGFCVFNDMAVAARLMQDEHARAASAMGANPLALRVAVIDLDVHQ 172
>gi|229522001|ref|ZP_04411418.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae TM
11079-80]
gi|419837765|ref|ZP_14361203.1| histone deacetylase domain protein [Vibrio cholerae HC-46B1]
gi|421344657|ref|ZP_15795060.1| histone deacetylase domain protein [Vibrio cholerae HC-43B1]
gi|421354707|ref|ZP_15805039.1| histone deacetylase domain protein [Vibrio cholerae HE-45]
gi|422307990|ref|ZP_16395143.1| histone deacetylase domain protein [Vibrio cholerae CP1035(8)]
gi|423735719|ref|ZP_17708915.1| histone deacetylase domain protein [Vibrio cholerae HC-41B1]
gi|424010057|ref|ZP_17752993.1| histone deacetylase domain protein [Vibrio cholerae HC-44C1]
gi|229340926|gb|EEO05931.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae TM
11079-80]
gi|395940737|gb|EJH51418.1| histone deacetylase domain protein [Vibrio cholerae HC-43B1]
gi|395953832|gb|EJH64445.1| histone deacetylase domain protein [Vibrio cholerae HE-45]
gi|408618659|gb|EKK91724.1| histone deacetylase domain protein [Vibrio cholerae CP1035(8)]
gi|408629577|gb|EKL02258.1| histone deacetylase domain protein [Vibrio cholerae HC-41B1]
gi|408856313|gb|EKL96008.1| histone deacetylase domain protein [Vibrio cholerae HC-46B1]
gi|408863585|gb|EKM03062.1| histone deacetylase domain protein [Vibrio cholerae HC-44C1]
Length = 306
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 99/195 (50%), Gaps = 7/195 (3%)
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
Y VGGT AL+ G +I++ GG+HHA G GFC + D+++ S+ +
Sbjct: 99 YSVGGTCLTVEQALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVL 158
Query: 279 IVDLDAHQGNGY-----EKDFMNETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEK 333
I+D D H G+G E+D + T F + ++ K A + A T D+ +L
Sbjct: 159 IIDSDVHHGDGTAILCAERDDII-TLSFHCDKNFPAR-KPASSMDVGFANQTGDEEFLST 216
Query: 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIV 393
+E ++ PD+I+Y+AG D+ +D LG L+IS I +RD + A++ +PI
Sbjct: 217 FIQVVEMAVNLHRPDLILYDAGVDIHNDDELGYLSISQAAIAQRDRFMLGLAKQESIPIA 276
Query: 394 MLTSGGYLKQTARII 408
+ GGY K A ++
Sbjct: 277 CVIGGGYRKDHAALV 291
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL+ G +I++ GG+HHA G GFC + D+++ S+ +I+D D H
Sbjct: 111 ALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
>gi|333899036|ref|YP_004472909.1| histone deacetylase superfamily protein [Pseudomonas fulva 12-X]
gi|333114301|gb|AEF20815.1| histone deacetylase superfamily [Pseudomonas fulva 12-X]
Length = 306
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 134/317 (42%), Gaps = 60/317 (18%)
Query: 110 PWPIVYRPEYNV-----HFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNII 164
P P++Y +Y+ H F +EK ++ + ++LV + + ++
Sbjct: 2 PLPLIYHDDYSPPFPGGHRFPMEK----------------FRLLRDHLVASGLTRDEELL 45
Query: 165 EPQEVSEEQLLIAHTEKYLK---------------SLKWSFNVAAISEVCPLVAVPNYFV 209
P+ + L + H Y++ L WS +A
Sbjct: 46 RPEICPADILALCHCPAYIERYLSGDLSHEDQRRLGLPWSPELAR--------------- 90
Query: 210 QKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF 269
R +R VGG+L A AL+ G + ++ GG HHA GFC + D++++ + L
Sbjct: 91 -----RTVRA-VGGSLLASEQALQHGLACHLAGGTHHAHYDYPAGFCIFNDLAVIARYLL 144
Query: 270 QSKSISTAMIVDLDAHQGNGYEKDFMN-ETRIFIMETCITS--KAKEAIRCRIELAPYTE 326
+S +I D D HQG+G + + I + C + K + I L
Sbjct: 145 ESGKAGRVLIFDCDVHQGDGTARLLEHVPDAITVSLHCEQNYPARKASSDWDIPLPRGMG 204
Query: 327 DQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKAR 386
D YL+ ++ L L + PDI++Y+AG DV +D LG L ++ G+ RDE V
Sbjct: 205 DADYLKVVDDTLGYLLALYQPDIVLYDAGVDVHKDDALGYLQLTDAGVAARDEAVLNHCL 264
Query: 387 ERRVPIVMLTSGGYLKQ 403
R +P+V + GGY K
Sbjct: 265 GRDIPVVGVIGGGYSKD 281
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A AL+ G + ++ GG HHA GFC + D++++ + L +S +I D
Sbjct: 98 GSLLASEQALQHGLACHLAGGTHHAHYDYPAGFCIFNDLAVIARYLLESGKAGRVLIFDC 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|345301994|ref|YP_004823896.1| histone deacetylase [Rhodothermus marinus SG0.5JP17-172]
gi|345111227|gb|AEN72059.1| Histone deacetylase [Rhodothermus marinus SG0.5JP17-172]
Length = 378
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 145/348 (41%), Gaps = 42/348 (12%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P+Y + F E HPF + LW L+EA I P E +
Sbjct: 3 PVVYHPDYLTYCFGPE--HPFSPVR----LEMLWT-----LLEA-LGCAPTPIRPPEATR 50
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPL-----VAVPNYFVQKCYLRPMRYHVGGTLE 226
E++L H E Y+ ++ A+ E P + P+ V R R VGGTL
Sbjct: 51 EEVLRVHAEDYVARVE----AASRGEYVPDAEAFGLDTPDVPVFPDMDRAARVLVGGTLH 106
Query: 227 AGFLAL--RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDA 284
L R + +GGGFHHA + GFC Y D+S+ ++ L + + A I D+D
Sbjct: 107 GARLIAEGRAPTVLQLGGGFHHAHPARASGFCVYNDLSIAIRALTDA-GLRVAYI-DIDV 164
Query: 285 HQGNG-----YEKDF-----MNETRIFIMETC-----ITSKAKEAIRCRIELAPYTEDQH 329
H G+G Y +D ++ET ++ I + + L P+T+D+
Sbjct: 165 HHGDGVQAIHYREDTVLTISLHETGQYLFPGTGFIDEIGEGRGQGFSLNVPLQPFTDDES 224
Query: 330 YLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERR 389
YLE E + +L F PD++V G D DPL L +S + R + A E
Sbjct: 225 YLEVFERVVPHALVMFRPDVLVVQCGADAHFQDPLADLLLSTRAYERLFRRLKALADEHT 284
Query: 390 VPIVMLT-SGGY-LKQTARIIADSILNLADLGLISRPYNIWFIYYTSK 435
+ T GGY T R+ A L L D R W I + +
Sbjct: 285 GGRALFTLGGGYDFDATVRVWALLYLVLQDRPFPERLPLSWRIEWEQR 332
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 19 INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+ +GGGFHHA + GFC Y D+S+ ++ L + + A I D+D H
Sbjct: 120 LQLGGGFHHAHPARASGFCVYNDLSIAIRALTDA-GLRVAYI-DIDVHH 166
>gi|261209974|ref|ZP_05924273.1| histone deacetylase/AcuC/AphA family protein [Vibrio sp. RC341]
gi|260840920|gb|EEX67457.1| histone deacetylase/AcuC/AphA family protein [Vibrio sp. RC341]
Length = 306
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 93/193 (48%), Gaps = 3/193 (1%)
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
+ VGGT AL G +I++ GG+HHA G GFC + D+++ + +
Sbjct: 99 FSVGGTCLTVEHALHSGLAIHLSGGYHHAHVDFGSGFCLFNDLAIAAHFALSLSGVDKVL 158
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIE 335
I+D D H G+G I + C + K A IE T D ++ +
Sbjct: 159 IIDSDVHHGDGTATLCAQRDDIITLSFHCDKNFPARKPASDMDIEFCKQTGDSEFISTFK 218
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
+E ++ PD+I+Y+AG D+ +D LG L+IS + I +RD + A++ +PI +
Sbjct: 219 QVVEIAVSVHQPDLIIYDAGVDIHHDDELGYLSISQEAIAQRDRFILGLAKQESIPIACV 278
Query: 396 TSGGYLKQTARII 408
GGY + A ++
Sbjct: 279 IGGGYREDHAALV 291
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL G +I++ GG+HHA G GFC + D+++ + +I+D D H
Sbjct: 111 ALHSGLAIHLSGGYHHAHVDFGSGFCLFNDLAIAAHFALSLSGVDKVLIIDSDVHH 166
>gi|91223676|ref|ZP_01258941.1| histone deacetylase/AcuC/AphA family protein [Vibrio alginolyticus
12G01]
gi|91191762|gb|EAS78026.1| histone deacetylase/AcuC/AphA family protein [Vibrio alginolyticus
12G01]
Length = 307
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 137/292 (46%), Gaps = 15/292 (5%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P +Y P Y+ +L + H + K++ YL++ + ++ + + +P+ ++
Sbjct: 3 PFIYHPIYSQ--LELPEGHRYPIMKYQ----YLYESVLVHMEKDNWKEHTQFFQPEALTV 56
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
++ H E+Y++ L S N+ A + P + + R + G L A A
Sbjct: 57 GEVKRVHDEEYVE-LLVSGNMPAAK--MRRIGFP--WSESLITRTLTSAAGTALTAK-KA 110
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L G +I++ GG+HHA + G GFC + D+ + + + + + +I+D D H G+G
Sbjct: 111 LEYGVAIHLSGGYHHAHKEFGSGFCLFNDLVIAARQALEVEHVDKVLIIDSDVHHGDGTA 170
Query: 292 KDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
+E I + C + K + + T D+ +L + ++ +L PD
Sbjct: 171 TLCDDEPDIITLSFHCDKNFPARKPQSDLDVPMVRGTGDEDFLMAFKEVVDMALNLHRPD 230
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
+++Y+AG D+ +D LG +S QGI+ RD + + R +P+ + GGY
Sbjct: 231 LVIYDAGVDIHQDDELGYFDVSTQGILERDRFLMQTVKSRGIPVAAVVGGGY 282
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT AL G +I++ GG+HHA + G GFC + D+ + + + + + +I+D
Sbjct: 102 GTALTAKKALEYGVAIHLSGGYHHAHKEFGSGFCLFNDLVIAARQALEVEHVDKVLIIDS 161
Query: 64 DAHQ 67
D H
Sbjct: 162 DVHH 165
>gi|421116476|ref|ZP_15576861.1| histone deacetylase family protein [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|410011936|gb|EKO70042.1| histone deacetylase family protein [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
Length = 271
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 112/244 (45%), Gaps = 10/244 (4%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
I +P + L + HT+++L +S N+ ++ L + K + VG
Sbjct: 17 IYKPDLAKTKDLSLVHTQEFLDDF-FSLNITERTQYSELP------LTKQIVHSFVLAVG 69
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
GT+ + L + + +IGGGFHH+ + GFC D ++ KL + + +DL
Sbjct: 70 GTILSMELTQKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIASKLYQKEYPDKKILFIDL 129
Query: 283 DAHQGNGYEKDFMNETRIFI--METCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLER 340
D HQGNG F N+ +F M KE I L D+ YLE +E L +
Sbjct: 130 DLHQGNGNSFIFQNDPDVFTFSMHQENLYPKKEKSDLDISLEEGIGDKEYLELLEKSLRK 189
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE-RRVPIVMLTSGG 399
F D+I Y AG D D LG L ++ QG+ +RD++V A +V+L +GG
Sbjct: 190 IESDFKSDLIFYIAGADPFEGDSLGDLKLTFQGLRKRDQIVRDFAYSLNDTRVVILPAGG 249
Query: 400 YLKQ 403
Y K
Sbjct: 250 YAKD 253
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ + L + + +IGGGFHH+ + GFC D ++ KL + + +DL
Sbjct: 70 GTILSMELTQKYKFVYHIGGGFHHSMPDRAEGFCYLNDAAIASKLYQKEYPDKKILFIDL 129
Query: 64 DAHQ 67
D HQ
Sbjct: 130 DLHQ 133
>gi|422640564|ref|ZP_16703990.1| histone deacetylase superfamily protein, partial [Pseudomonas
syringae Cit 7]
gi|330952954|gb|EGH53214.1| histone deacetylase superfamily protein [Pseudomonas syringae Cit
7]
Length = 265
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 95/187 (50%), Gaps = 5/187 (2%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
VGG+L AL+ G + ++ GG HHA GFC + D++++ + L QS + +I
Sbjct: 56 VGGSLLTAEQALKHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQFLLQSGRVDKVLIF 115
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEA 336
D D HQG+G + + +T I + K A + + I L D YL ++
Sbjct: 116 DCDVHQGDGTAR-ILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDVDYLNVVDD 174
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
L L + PD+++Y+AG DV +D LG L ++ QG+ RDE V R +P++ +
Sbjct: 175 LLNYLLPFYKPDLVLYDAGVDVHKDDALGYLQLTDQGLANRDEAVLRHCLGRDIPVMGVI 234
Query: 397 SGGYLKQ 403
GGY K
Sbjct: 235 GGGYSKD 241
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L AL+ G + ++ GG HHA GFC + D++++ + L QS + +I D
Sbjct: 58 GSLLTAEQALKHGLACHLAGGTHHAHYDYPAGFCIFNDLAVISQFLLQSGRVDKVLIFDC 117
Query: 64 DAHQ 67
D HQ
Sbjct: 118 DVHQ 121
>gi|226500478|ref|NP_001144492.1| uncharacterized protein LOC100277470 precursor [Zea mays]
gi|195642812|gb|ACG40874.1| hypothetical protein [Zea mays]
Length = 116
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 63/77 (81%)
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT 404
F P +IVYNAGTD+L DPLG L +SP+G++ RDE VF A++R +P++MLTSGGY+K +
Sbjct: 33 FEPQLIVYNAGTDILDGDPLGRLKVSPEGVVTRDEKVFRFAKDRNIPLLMLTSGGYMKSS 92
Query: 405 ARIIADSILNLADLGLI 421
AR+IADSI+NL++ LI
Sbjct: 93 ARVIADSIINLSNKNLI 109
>gi|417821386|ref|ZP_12468000.1| histone deacetylase domain protein [Vibrio cholerae HE39]
gi|423956550|ref|ZP_17735104.1| histone deacetylase domain protein [Vibrio cholerae HE-40]
gi|423985338|ref|ZP_17738655.1| histone deacetylase domain protein [Vibrio cholerae HE-46]
gi|340039017|gb|EGQ99991.1| histone deacetylase domain protein [Vibrio cholerae HE39]
gi|408657344|gb|EKL28424.1| histone deacetylase domain protein [Vibrio cholerae HE-40]
gi|408663942|gb|EKL34787.1| histone deacetylase domain protein [Vibrio cholerae HE-46]
Length = 306
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 3/193 (1%)
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
+ VGGT AL+ G +I++ GG+HHA G GFC + D+++ S+ +
Sbjct: 99 HSVGGTCLTVEQALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVL 158
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIE 335
I+D D H G+G I + C + K A + A T D+ +L
Sbjct: 159 IIDSDVHHGDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGDEEFLSTFI 218
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
+E ++ PD+I+Y+AG D+ +D LG L+IS I +RD +F A++ +PI +
Sbjct: 219 QVVEMAVNLHRPDLILYDAGVDIHNDDELGYLSISQAAIAQRDRFMFGLAKQESIPIACV 278
Query: 396 TSGGYLKQTARII 408
GGY + A ++
Sbjct: 279 IGGGYREDHAALV 291
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL+ G +I++ GG+HHA G GFC + D+++ S+ +I+D D H
Sbjct: 111 ALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
>gi|258625470|ref|ZP_05720363.1| histone deacetylase/AcuC/AphA family protein [Vibrio mimicus VM603]
gi|258582274|gb|EEW07130.1| histone deacetylase/AcuC/AphA family protein [Vibrio mimicus VM603]
Length = 306
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 3/191 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
VGGT AL G +I++ GG+HHA G GFC + D+++ + +I+
Sbjct: 101 VGGTCLTVERALLSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLSGVDKVLII 160
Query: 281 DLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAG 337
D D H G+G I + C + K A IE T D+ +L
Sbjct: 161 DSDVHHGDGTATLCAERDEIITLSFHCDKNFPARKPASDMDIEFTKQTGDEEFLSTFTQV 220
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
+E ++ PD+I+Y+AG D+ +D LG L+IS I RRD + A++ +PI +
Sbjct: 221 VEMAVNLHQPDLILYDAGVDIHSDDELGYLSISQAAIARRDCFMLSLAKQSNIPIACVIG 280
Query: 398 GGYLKQTARII 408
GGY + A ++
Sbjct: 281 GGYRENHASLV 291
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL G +I++ GG+HHA G GFC + D+++ + +I+D D H
Sbjct: 111 ALLSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLSGVDKVLIIDSDVHH 166
>gi|218708941|ref|YP_002416562.1| histone deacetylase/AcuC/AphA family protein [Vibrio splendidus
LGP32]
gi|218321960|emb|CAV17960.1| histone deacetylase/AcuC/AphA family protein [Vibrio splendidus
LGP32]
Length = 306
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 138/300 (46%), Gaps = 14/300 (4%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y+ L + H + K++ + + + + + + K+ + +P VS
Sbjct: 3 PLIYHPIYSQ--LPLPEGHRYPINKYQLLHSAVEALMDS---DPKWGNAFEMFQPMPVSV 57
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
EQ+ H +Y+ L S N+ A + + + ++ R + Y GGT A +A
Sbjct: 58 EQVKQVHDGEYV-DLLVSGNLPAAK----MRRIGFPWSEQLIERTL-YSSGGTCLAAEMA 111
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
+ G +I++ GG+HHA G GFC D+ L K + I +IVD D H G+G
Sbjct: 112 IESGLAIHLSGGYHHAHRDFGSGFCLLNDLVLAAKHALTFEHIDKVLIVDSDVHHGDGTA 171
Query: 292 KDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
I + C + K + L+ TED+ +L E + ++ PD
Sbjct: 172 TLCQESDEIITLSFHCDKNFPARKPLSDLDVPLSRETEDEEFLRCFEQVTKLAIAHHQPD 231
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
+I+Y+AG D+ +D LG L +S +GI RD + A+ +P+ + GGY + ++
Sbjct: 232 LIIYDAGIDIHQDDELGYLNVSTKGIFERDCFMIELAKSESIPMACVVGGGYRTEHQDLV 291
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A +A+ G +I++ GG+HHA G GFC D+ L K + I +IVD
Sbjct: 103 GTCLAAEMAIESGLAIHLSGGYHHAHRDFGSGFCLLNDLVLAAKHALTFEHIDKVLIVDS 162
Query: 64 DAHQ 67
D H
Sbjct: 163 DVHH 166
>gi|254286837|ref|ZP_04961790.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
AM-19226]
gi|150423128|gb|EDN15076.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
AM-19226]
Length = 306
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 93/193 (48%), Gaps = 3/193 (1%)
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
Y VGGT AL+ G +I++ GG+HHA G GFC + D+++ S+ +
Sbjct: 99 YSVGGTCLTVEQALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVL 158
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIE 335
I+D D H G+G I + C + K A + A T D+ +L
Sbjct: 159 IIDSDVHHGDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGDEEFLSTFI 218
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
+E ++ PD+I+Y+AG D+ +D LG L+IS I +RD + A+ +PI +
Sbjct: 219 QVVEMAVNLHRPDLILYDAGVDIHNDDELGYLSISQAAIAQRDRFMLGLAKXESIPIACV 278
Query: 396 TSGGYLKQTARII 408
GGY K A ++
Sbjct: 279 IGGGYRKDHAALV 291
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL+ G +I++ GG+HHA G GFC + D+++ S+ +I+D D H
Sbjct: 111 ALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
>gi|145355001|ref|XP_001421761.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581999|gb|ABP00055.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 350
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 90/174 (51%), Gaps = 8/174 (4%)
Query: 237 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS----TAMIVDLDAHQGNGYEK 292
S I GG HHA +G GFC + D+++ + + + + S +++DLD HQGNG K
Sbjct: 151 SAQIAGGTHHAYRDRGEGFCVFNDVAVAINVARREFADSLRDRKILVIDLDVHQGNGTAK 210
Query: 293 DFMNETRI--FIM--ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
F + ++ F M E K +E +EL ED+ YL +E L + + P
Sbjct: 211 IFEGDAQVVTFSMHGEKNYPIKTREKSTHDVELPDDCEDEEYLSLLEQWLPKLFDDYDPA 270
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402
I+ + AG D L D G LA+S +G++RR+ V+ R VP+V+ GGY K
Sbjct: 271 IVFFQAGIDALKEDSFGRLAMSREGLLRRNNAVYSMCIAREVPLVITMGGGYSK 324
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS----TAMIVDLDAHQ 67
S I GG HHA +G GFC + D+++ + + + + S +++DLD HQ
Sbjct: 151 SAQIAGGTHHAYRDRGEGFCVFNDVAVAINVARREFADSLRDRKILVIDLDVHQ 204
>gi|153827202|ref|ZP_01979869.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
MZO-2]
gi|149738887|gb|EDM53215.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
MZO-2]
Length = 306
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 3/193 (1%)
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
Y VGGT AL+ G +I++ GG+HHA G GFC + D+++ S+ +
Sbjct: 99 YSVGGTCLTVEQALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVL 158
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIE 335
I+D D H G+G I + C + K A + A T D+ +L
Sbjct: 159 IIDSDVHHGDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGDEEFLSTFI 218
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
+E ++ PD+I+Y+AG D+ +D LG L+IS I +RD + A++ +PI +
Sbjct: 219 QVVEMAVNLHQPDLILYDAGVDIHNDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACV 278
Query: 396 TSGGYLKQTARII 408
GGY + A ++
Sbjct: 279 IGGGYREDHAALV 291
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL+ G +I++ GG+HHA G GFC + D+++ S+ +I+D D H
Sbjct: 111 ALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
>gi|429220434|ref|YP_007182078.1| deacetylase [Deinococcus peraridilitoris DSM 19664]
gi|429131297|gb|AFZ68312.1| deacetylase, histone deacetylase/acetoin utilization protein
[Deinococcus peraridilitoris DSM 19664]
Length = 297
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 88/191 (46%), Gaps = 3/191 (1%)
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
R G T+ A ALR GW +N+ GG HHA + GF D+ + V L + +S
Sbjct: 89 RRASGATVVALRDALRSGWGVNLSGGTHHAFFDRAEGFSLLNDVVIAVTLALREGWVSRV 148
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
IVDLD HQGNG E R + + KE I L D YL +
Sbjct: 149 AIVDLDVHQGNGTASLLAREARAYTLSVHGERNYPFRKERSSLDIALGDGVSDLQYLHVL 208
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
+ + +L +F PD++VY AG DVL D G A++ +G R V+ + VP V
Sbjct: 209 DTQVFPALDAFRPDLLVYLAGVDVLGGDRFGRFALTLEGADERSRRVYRWCKAAGVPAVT 268
Query: 395 LTSGGYLKQTA 405
+GGY + A
Sbjct: 269 TMAGGYNRDFA 279
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQFSDY 71
ALR GW +N+ GG HHA + GF D+ + V L + +S IVDLD HQ +
Sbjct: 102 ALRSGWGVNLSGGTHHAFFDRAEGFSLLNDVVIAVTLALREGWVSRVAIVDLDVHQGNGT 161
Query: 72 YFPSAH-------SIKRKRKVEFLKERKALE 95
A S+ +R F KER +L+
Sbjct: 162 ASLLAREARAYTLSVHGERNYPFRKERSSLD 192
>gi|428218687|ref|YP_007103152.1| histone deacetylase [Pseudanabaena sp. PCC 7367]
gi|427990469|gb|AFY70724.1| Histone deacetylase [Pseudanabaena sp. PCC 7367]
Length = 325
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 135/320 (42%), Gaps = 40/320 (12%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY P Y L H F K F L + L+ + T D P+ +
Sbjct: 4 PIVYHPNY---VAPLPAGHRFPMPK----FGLLR----DQLIADRVATIDQFHAPEPPPQ 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+ + H Y+ + N ++ + +P + LR + + G++ LA
Sbjct: 53 DWFELVHDPDYVDAY---CNGTLDTKAQRRIGLP--WSAGLALR-TQTAIAGSILTTKLA 106
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY- 290
+ G + N GG HHA + G GFC + D+++ KL+ Q +IVDLD HQG+G
Sbjct: 107 IEHGLACNTAGGTHHAFPSFGSGFCIFNDLAIATKLVQQQNLAQRVLIVDLDVHQGDGTA 166
Query: 291 ---------EKDFMNETRIFIMETCITSKAKEAIRCR-------------IELAPYTEDQ 328
+ NET ++ + T ++ C+ + L ED+
Sbjct: 167 FIFNAINQAQASLTNETNNWVKDARKTEVFTFSMHCQDNFPHRKQTSHLDVPLPVGMEDE 226
Query: 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER 388
YL + + L L F PD+++Y+AG D + D LG LA++ G+ RR+ V +
Sbjct: 227 DYLRTLASYLPDLLDQFKPDLVLYDAGVDTHIGDRLGKLALTNTGLFRREMQVLSTCVGQ 286
Query: 389 RVPIVMLTSGGYLKQTARII 408
P+ + GGY + ++
Sbjct: 287 GYPVACVIGGGYAEDMRALV 306
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 14/124 (11%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G++ LA+ G + N GG HHA + G GFC + D+++ KL+ Q +IVDL
Sbjct: 98 GSILTTKLAIEHGLACNTAGGTHHAFPSFGSGFCIFNDLAIATKLVQQQNLAQRVLIVDL 157
Query: 64 DAHQFSDYYF--------------PSAHSIKRKRKVEFLKERKALEDEITSEPQESVVTR 109
D HQ F + + +K RK E +D Q S +
Sbjct: 158 DVHQGDGTAFIFNAINQAQASLTNETNNWVKDARKTEVFTFSMHCQDNFPHRKQTSHLDV 217
Query: 110 PWPI 113
P P+
Sbjct: 218 PLPV 221
>gi|422910892|ref|ZP_16945520.1| histone deacetylase domain protein [Vibrio cholerae HE-09]
gi|424660555|ref|ZP_18097802.1| histone deacetylase domain protein [Vibrio cholerae HE-16]
gi|341632766|gb|EGS57623.1| histone deacetylase domain protein [Vibrio cholerae HE-09]
gi|408050285|gb|EKG85450.1| histone deacetylase domain protein [Vibrio cholerae HE-16]
Length = 306
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 3/193 (1%)
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
Y VGGT AL+ G +I++ GG+HHA G GFC + D+++ S+ +
Sbjct: 99 YSVGGTCLTVEQALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVL 158
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIE 335
I+D D H G+G I + C + K A + A T D+ +L
Sbjct: 159 IIDSDVHHGDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGDEEFLSTFI 218
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
+E ++ PD+I+Y+AG D+ +D LG L+IS I +RD + A++ +PI +
Sbjct: 219 QVVEMAVNLHRPDLILYDAGVDIHSDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACV 278
Query: 396 TSGGYLKQTARII 408
GGY + A ++
Sbjct: 279 IGGGYREDHAALV 291
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL+ G +I++ GG+HHA G GFC + D+++ S+ +I+D D H
Sbjct: 111 ALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
>gi|262170966|ref|ZP_06038644.1| histone deacetylase/AcuC/AphA family protein [Vibrio mimicus
MB-451]
gi|261892042|gb|EEY38028.1| histone deacetylase/AcuC/AphA family protein [Vibrio mimicus
MB-451]
Length = 306
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 3/191 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
VGGT AL G +I++ GG+HHA G GFC + D+++ + +I+
Sbjct: 101 VGGTCLTVERALLSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLSGVDKVLII 160
Query: 281 DLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAG 337
D D H G+G I + C + K A IE T D+ +L
Sbjct: 161 DSDVHHGDGTATLCAERDEIITLSFHCDKNFPARKPASDMDIEFTKQTGDEEFLSTFTQV 220
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
+E ++ PD+I+Y+AG D+ +D LG L+IS I RRD + A++ +PI +
Sbjct: 221 VEMAVNLHQPDLILYDAGVDIHSDDELGYLSISQAAIARRDCFMLSLAKQSNIPIACVIG 280
Query: 398 GGYLKQTARII 408
GGY + A ++
Sbjct: 281 GGYRENHASLV 291
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL G +I++ GG+HHA G GFC + D+++ + +I+D D H
Sbjct: 111 ALLSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLSGVDKVLIIDSDVHH 166
>gi|376004310|ref|ZP_09782035.1| histone deacetylase/AcuC/AphA family protein (fragment)
[Arthrospira sp. PCC 8005]
gi|375327329|emb|CCE17788.1| histone deacetylase/AcuC/AphA family protein (fragment)
[Arthrospira sp. PCC 8005]
Length = 210
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 93/191 (48%), Gaps = 3/191 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
+GG + LAL G + N GG HHA G GFC + DI++ ++ + +IV
Sbjct: 1 MGGAILTAKLALSHGLACNTAGGTHHAFPNYGSGFCIFNDIAIAACVMQKLGLAKKILIV 60
Query: 281 DLDAHQGNGYEKDFMNETRIFI--METCITSKAKEAIRCR-IELAPYTEDQHYLEKIEAG 337
DLD HQG+ F + +F M AK+ R I LA ED+ YL+ + +
Sbjct: 61 DLDVHQGDATAVIFQDNPHVFTFSMHCQANFPAKKQTSDRDIPLAVGMEDEEYLQILASH 120
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L L F PD+++Y+AG D + D LG LA++ G+ RR+ V P+ +
Sbjct: 121 LPDLLTEFRPDLVIYDAGVDTHIGDRLGKLALTDSGLWRREMQVLSTCVGMGYPVAGIIG 180
Query: 398 GGYLKQTARII 408
GGY + ++
Sbjct: 181 GGYCEDMQSLV 191
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 26/159 (16%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G + LAL G + N GG HHA G GFC + DI++ ++ + +IVDL
Sbjct: 3 GAILTAKLALSHGLACNTAGGTHHAFPNYGSGFCIFNDIAIAACVMQKLGLAKKILIVDL 62
Query: 64 DAHQ-------FSDYYFPSAHSIKRKRKVEFLKERK----------ALEDE----ITSEP 102
D HQ F D P + + F +++ +EDE I +
Sbjct: 63 DVHQGDATAVIFQDN--PHVFTFSMHCQANFPAKKQTSDRDIPLAVGMEDEEYLQILASH 120
Query: 103 QESVVT--RPWPIVYRPEYNVHFF-KLEKLHPFDSKKWK 138
++T RP ++Y + H +L KL DS W+
Sbjct: 121 LPDLLTEFRPDLVIYDAGVDTHIGDRLGKLALTDSGLWR 159
>gi|419830506|ref|ZP_14353991.1| histone deacetylase domain protein [Vibrio cholerae HC-1A2]
gi|419834188|ref|ZP_14357643.1| histone deacetylase domain protein [Vibrio cholerae HC-61A2]
gi|422917892|ref|ZP_16952210.1| histone deacetylase domain protein [Vibrio cholerae HC-02A1]
gi|423822793|ref|ZP_17716803.1| histone deacetylase domain protein [Vibrio cholerae HC-55C2]
gi|423856759|ref|ZP_17720611.1| histone deacetylase domain protein [Vibrio cholerae HC-59A1]
gi|423883062|ref|ZP_17724199.1| histone deacetylase domain protein [Vibrio cholerae HC-60A1]
gi|423998319|ref|ZP_17741571.1| histone deacetylase domain protein [Vibrio cholerae HC-02C1]
gi|424017213|ref|ZP_17757042.1| histone deacetylase domain protein [Vibrio cholerae HC-55B2]
gi|424020137|ref|ZP_17759923.1| histone deacetylase domain protein [Vibrio cholerae HC-59B1]
gi|424625511|ref|ZP_18063972.1| histone deacetylase domain protein [Vibrio cholerae HC-50A1]
gi|424629994|ref|ZP_18068281.1| histone deacetylase domain protein [Vibrio cholerae HC-51A1]
gi|424634042|ref|ZP_18072142.1| histone deacetylase domain protein [Vibrio cholerae HC-52A1]
gi|424637120|ref|ZP_18075128.1| histone deacetylase domain protein [Vibrio cholerae HC-55A1]
gi|424641029|ref|ZP_18078912.1| histone deacetylase domain protein [Vibrio cholerae HC-56A1]
gi|424649095|ref|ZP_18086758.1| histone deacetylase domain protein [Vibrio cholerae HC-57A1]
gi|443528013|ref|ZP_21094061.1| histone deacetylase domain protein [Vibrio cholerae HC-78A1]
gi|341636774|gb|EGS61468.1| histone deacetylase domain protein [Vibrio cholerae HC-02A1]
gi|408012064|gb|EKG49860.1| histone deacetylase domain protein [Vibrio cholerae HC-50A1]
gi|408017961|gb|EKG55433.1| histone deacetylase domain protein [Vibrio cholerae HC-52A1]
gi|408023175|gb|EKG60354.1| histone deacetylase domain protein [Vibrio cholerae HC-56A1]
gi|408023669|gb|EKG60828.1| histone deacetylase domain protein [Vibrio cholerae HC-55A1]
gi|408032614|gb|EKG69195.1| histone deacetylase domain protein [Vibrio cholerae HC-57A1]
gi|408054782|gb|EKG89741.1| histone deacetylase domain protein [Vibrio cholerae HC-51A1]
gi|408620279|gb|EKK93291.1| histone deacetylase domain protein [Vibrio cholerae HC-1A2]
gi|408634769|gb|EKL07004.1| histone deacetylase domain protein [Vibrio cholerae HC-55C2]
gi|408640551|gb|EKL12340.1| histone deacetylase domain protein [Vibrio cholerae HC-59A1]
gi|408641186|gb|EKL12967.1| histone deacetylase domain protein [Vibrio cholerae HC-60A1]
gi|408649010|gb|EKL20327.1| histone deacetylase domain protein [Vibrio cholerae HC-61A2]
gi|408852674|gb|EKL92496.1| histone deacetylase domain protein [Vibrio cholerae HC-02C1]
gi|408859924|gb|EKL99578.1| histone deacetylase domain protein [Vibrio cholerae HC-55B2]
gi|408867231|gb|EKM06593.1| histone deacetylase domain protein [Vibrio cholerae HC-59B1]
gi|443453529|gb|ELT17348.1| histone deacetylase domain protein [Vibrio cholerae HC-78A1]
Length = 306
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 3/193 (1%)
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
Y VGGT AL+ G +I++ GG+HHA G GFC + D+++ S+ +
Sbjct: 99 YSVGGTCLTVEQALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVL 158
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIE 335
I+D D H G+G I + C + K A + A T D+ +L
Sbjct: 159 IIDSDVHHGDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGDEEFLSTFI 218
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
+E ++ PD+I+Y+AG D+ +D LG L+IS I +RD + A++ +PI +
Sbjct: 219 QVVEMAVNLHRPDLILYDAGVDIHSDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACV 278
Query: 396 TSGGYLKQTARII 408
GGY + A ++
Sbjct: 279 IGGGYREDHAALV 291
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL+ G +I++ GG+HHA G GFC + D+++ S+ +I+D D H
Sbjct: 111 ALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
>gi|153831403|ref|ZP_01984070.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
623-39]
gi|148873114|gb|EDL71249.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
623-39]
Length = 306
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 3/193 (1%)
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
Y VGGT AL+ G +I++ GG+HHA G GFC + D+++ S+ +
Sbjct: 99 YSVGGTCLTVEQALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVL 158
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIE 335
I+D D H G+G I + C + K A + A T D+ +L
Sbjct: 159 IIDSDVHHGDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGDEEFLSTFI 218
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
+E ++ PD+I+Y+AG D+ +D LG L+IS I +RD + A++ +PI +
Sbjct: 219 QVVEMAVNLHRPDLILYDAGVDIHNDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACV 278
Query: 396 TSGGYLKQTARII 408
GGY + A ++
Sbjct: 279 IGGGYREDHAALV 291
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL+ G +I++ GG+HHA G GFC + D+++ S+ +I+D D H
Sbjct: 111 ALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
>gi|229524050|ref|ZP_04413455.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae bv.
albensis VL426]
gi|229337631|gb|EEO02648.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae bv.
albensis VL426]
Length = 306
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 3/193 (1%)
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
Y VGGT AL+ G +I++ GG+HHA G GFC + D+++ S+ +
Sbjct: 99 YSVGGTCLTVEQALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVL 158
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIE 335
I+D D H G+G I + C + K A + A T D+ +L
Sbjct: 159 IIDSDVHHGDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGDEEFLSTFI 218
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
+E ++ PD+I+Y+AG D+ +D LG L+IS I +RD + A++ +PI +
Sbjct: 219 QVVEMAVNLHRPDLILYDAGVDIHSDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACV 278
Query: 396 TSGGYLKQTARII 408
GGY + A ++
Sbjct: 279 IGGGYREDHAALV 291
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL+ G +I++ GG+HHA G GFC + D+++ S+ +I+D D H
Sbjct: 111 ALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
>gi|86148483|ref|ZP_01066772.1| histone deacetylase/AcuC/AphA family protein [Vibrio sp. MED222]
gi|85833723|gb|EAQ51892.1| histone deacetylase/AcuC/AphA family protein [Vibrio sp. MED222]
Length = 306
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 3/193 (1%)
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
Y GGT A +A+ G +I++ GG+HHA G GFC D+ L K + I +
Sbjct: 99 YSSGGTCLAAEMAIESGLAIHLSGGYHHAHRDFGSGFCLLNDLVLAAKHALTFEHIDKVL 158
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIE 335
IVD D H G+G I + C + K + L+ TED+ +L E
Sbjct: 159 IVDSDVHHGDGTATLCQESDEIITLSFHCDKNFPARKPLSDLDVPLSRETEDEEFLRCFE 218
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
+ ++ PD+I+Y+AG D+ +D LG L +S +GI RD + A+ +P+ +
Sbjct: 219 QVTKLAIAHHQPDLIIYDAGIDIHQDDELGYLNVSTKGIFERDCFMIELAKSESIPMACV 278
Query: 396 TSGGYLKQTARII 408
GGY + ++
Sbjct: 279 VGGGYRTEHQDLV 291
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A +A+ G +I++ GG+HHA G GFC D+ L K + I +IVD
Sbjct: 103 GTCLAAEMAIESGLAIHLSGGYHHAHRDFGSGFCLLNDLVLAAKHALTFEHIDKVLIVDS 162
Query: 64 DAHQ 67
D H
Sbjct: 163 DVHH 166
>gi|197337404|ref|YP_002157959.1| deacetylase [Vibrio fischeri MJ11]
gi|197314656|gb|ACH64105.1| deacetylase [Vibrio fischeri MJ11]
Length = 298
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 133/293 (45%), Gaps = 23/293 (7%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
++Y P Y+ L H + +K++ ++ + H + L EP +S E
Sbjct: 4 LIYHPIYSQ--LALPDGHRYPIQKYQRLYQAIQSHYSDELY--------CCFEPIPLSIE 53
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGFL 230
+ H E Y+ +L AA + P +++ L GT
Sbjct: 54 AIKQVHEENYVNALVTGTLPAAKMR---RIGFPWSESLIERTLLS-----ASGTCLTVDK 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G +I++ GG+HHA G GFC D+++ SI +I+D D H G+G
Sbjct: 106 ALENGSAIHLSGGYHHAHYDFGSGFCLVNDLAIAAHHGLSKDSIDKVLIIDSDVHHGDGT 165
Query: 291 EKDFMNETRIFIME-TCITS-KAKEAIR-CRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ I + C + A++ I + L+ T+D +LE E +E ++ P
Sbjct: 166 ATLCADRGDIITLSFHCDKNFPARKPISDYDVPLSVGTQDNEFLEAFEQIVEMAINHHQP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
D+I+Y+AG D+ ++D LG L++S +G+ +RD + A ++ +PI + GGY
Sbjct: 226 DLIIYDAGVDIHIDDELGYLSVSTEGLYQRDRFMKSIATQKGIPIACVAGGGY 278
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL G +I++ GG+HHA G GFC D+++ SI +I+D D H
Sbjct: 106 ALENGSAIHLSGGYHHAHYDFGSGFCLVNDLAIAAHHGLSKDSIDKVLIIDSDVHH 161
>gi|374340700|ref|YP_005097436.1| deacetylase [Marinitoga piezophila KA3]
gi|372102234|gb|AEX86138.1| deacetylase, histone deacetylase/acetoin utilization protein
[Marinitoga piezophila KA3]
Length = 300
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 121/252 (48%), Gaps = 27/252 (10%)
Query: 162 NIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHV 221
N+I P+ +E+L + HT Y+KS++ + +A + V K P R V
Sbjct: 42 NLISPEYAEKEELALFHTLDYIKSIEENIGGSAETPV------------KNMYNPARLSV 89
Query: 222 GGTLEA-GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
G TL A + S+N+ GG+HHA E + GFC + D+ + K Q K S MI+
Sbjct: 90 GATLTAINSITDDARISVNLCGGWHHAFENRARGFCIFNDVVIGAKYA-QKKGFSKVMII 148
Query: 281 DLDAHQGNGYEKDFMNETRIFIME------------TCITSKAKEAIRCRIELAPYTEDQ 328
D D H G+G ++ F+N+ ++ + + TS+ K+ I + P +Q
Sbjct: 149 DWDVHHGDGTQRAFLNDDSVYTISIHQDPSTQYPYVSGFTSENKKT-NLNIPITPGESEQ 207
Query: 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER 388
+ ++ + + +R F P++++ G D + DP+ + +S + ++ A++
Sbjct: 208 EIMTRVLSTIPNEIRFFKPEMLIIQMGVDGDMYDPMSSINLSERFYKSISVVLARCAKKN 267
Query: 389 RVPIVMLTSGGY 400
+ P+++L GG+
Sbjct: 268 KFPVILLGGGGF 279
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
S+N+ GG+HHA E + GFC + D+ + K Q K S MI+D D H
Sbjct: 106 SVNLCGGWHHAFENRARGFCIFNDVVIGAKYA-QKKGFSKVMIIDWDVHH 154
>gi|229528940|ref|ZP_04418330.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
12129(1)]
gi|297579548|ref|ZP_06941476.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
RC385]
gi|384425022|ref|YP_005634380.1| Histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
LMA3984-4]
gi|229332714|gb|EEN98200.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
12129(1)]
gi|297537142|gb|EFH75975.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
RC385]
gi|327484575|gb|AEA78982.1| Histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
LMA3984-4]
Length = 306
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 3/193 (1%)
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
Y VGGT AL+ G +I++ GG+HHA G GFC + D+++ S+ +
Sbjct: 99 YSVGGTCLTVEQALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVL 158
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIE 335
I+D D H G+G I + C + K A + A T D+ +L
Sbjct: 159 IIDSDVHHGDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGDEEFLSTFI 218
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
+E ++ PD+I+Y+AG D+ +D LG L+IS I +RD + A++ +PI +
Sbjct: 219 QVVEMAVNLHRPDLILYDAGVDIHNDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACV 278
Query: 396 TSGGYLKQTARII 408
GGY + A ++
Sbjct: 279 IGGGYREDHAALV 291
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL+ G +I++ GG+HHA G GFC + D+++ S+ +I+D D H
Sbjct: 111 ALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
>gi|418062902|ref|ZP_12700642.1| histone deacetylase superfamily, partial [Methylobacterium
extorquens DSM 13060]
gi|373563553|gb|EHP89742.1| histone deacetylase superfamily, partial [Methylobacterium
extorquens DSM 13060]
Length = 183
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 242 GGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIF 301
GG HHA G GFC + D+++ L + +I+ A+IVDLD HQG+G E +F
Sbjct: 1 GGSHHARRAGGAGFCVFNDVAVAALALRREGAITRALIVDLDVHQGDGTADCLAREPDLF 60
Query: 302 IMET-CITSKAKEAI--RCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDV 358
+ C + + + I L +D Y +EA L +++F PD+I YNAG D
Sbjct: 61 TLSIHCERNYPHDKVPGDLDIGLPDGLDDAEYFAVLEARLPALVQNFAPDLIFYNAGVDP 120
Query: 359 LLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
+D LG L ++ G++ RD V A+ +R+P+ + GGY
Sbjct: 121 HRDDRLGRLCLTDAGLLARDRYVVGLAQSQRIPLCAVIGGGY 162
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 23 GGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
GG HHA G GFC + D+++ L + +I+ A+IVDLD HQ
Sbjct: 1 GGSHHARRAGGAGFCVFNDVAVAALALRREGAITRALIVDLDVHQ 45
>gi|121730304|ref|ZP_01682673.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae V52]
gi|121627942|gb|EAX60511.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae V52]
Length = 306
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 3/193 (1%)
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
+ VGGT AL+ G +I++ GG+HHA G GFC + D+++ S+ +
Sbjct: 99 HSVGGTCLTVEQALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVL 158
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIE 335
I+D D H G+G I + C + K A + A T D+ +L
Sbjct: 159 IIDSDVHHGDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGDEEFLSTFI 218
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
+E ++ PD+I+Y+AG D+ +D LG L+IS I +RD + A++ +PI +
Sbjct: 219 QVVEMAVNLHRPDLILYDAGVDIHNDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACV 278
Query: 396 TSGGYLKQTARII 408
GGY K A ++
Sbjct: 279 IGGGYRKDHAALV 291
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL+ G +I++ GG+HHA G GFC + D+++ S+ +I+D D H
Sbjct: 111 ALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
>gi|429885836|ref|ZP_19367411.1| Histone deacetylase/AcuC/AphA family protein [Vibrio cholerae PS15]
gi|429227354|gb|EKY33385.1| Histone deacetylase/AcuC/AphA family protein [Vibrio cholerae PS15]
Length = 306
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 3/193 (1%)
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
Y VGGT AL+ G +I++ GG+HHA G GFC + D+++ S+ +
Sbjct: 99 YSVGGTCLTVEQALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVL 158
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIE 335
I+D D H G+G I + C + K A + A T D+ +L
Sbjct: 159 IIDSDVHHGDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGDEEFLCTFI 218
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
+E ++ PD+I+Y+AG D+ +D LG L+IS I +RD + A+++ +PI +
Sbjct: 219 QVVEMAVNLHRPDLILYDAGVDIHNDDELGYLSISQAAIAQRDRFMLGLAKQQSIPIACV 278
Query: 396 TSGGYLKQTARII 408
GGY + A ++
Sbjct: 279 IGGGYREDHAALV 291
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL+ G +I++ GG+HHA G GFC + D+++ S+ +I+D D H
Sbjct: 111 ALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
>gi|449144557|ref|ZP_21775372.1| Histone deacetylase/AcuC/AphA family protein [Vibrio mimicus CAIM
602]
gi|449080058|gb|EMB50977.1| Histone deacetylase/AcuC/AphA family protein [Vibrio mimicus CAIM
602]
Length = 306
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 3/191 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
VGGT AL+ G SI++ GG+HHA G GFC + D+++ + +I+
Sbjct: 101 VGGTCLTVERALQSGLSIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLSGVDKVLII 160
Query: 281 DLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAG 337
D D G+G I + C + K A IE T D+ +L
Sbjct: 161 DSDVDHGDGTATLCAEREEIITLSFHCDKNFPARKPASDMDIEFIKQTGDEEFLSTFTQV 220
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
+E ++ PD+I+Y+AG D+ +D LG L+IS I RRD + A++ +PI +
Sbjct: 221 VEMAVNLHQPDLILYDAGVDIHSDDELGYLSISQAAIARRDYFMLSLAKQSNIPIACVIG 280
Query: 398 GGYLKQTARII 408
GGY + A ++
Sbjct: 281 GGYRENHASLV 291
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
AL+ G SI++ GG+HHA G GFC + D+++ + +I+D D
Sbjct: 111 ALQSGLSIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLSGVDKVLIIDSD 163
>gi|332527742|ref|ZP_08403783.1| hypothetical protein RBXJA2T_17377 [Rubrivivax benzoatilyticus JA2]
gi|332112140|gb|EGJ12116.1| hypothetical protein RBXJA2T_17377 [Rubrivivax benzoatilyticus JA2]
Length = 314
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 123/276 (44%), Gaps = 20/276 (7%)
Query: 147 HIFNYLVEAKFITQDNI-IEPQ-EVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAV 204
H ++ L EA T I +EP S+ +L +AH ++ ++ AA
Sbjct: 22 HKYHLLREAVAATLPAIRVEPAPAASDGELALAHEPAWIDAVAHGTTSAAQQREI----- 76
Query: 205 PNYFVQKCYLRPMRYHVGGTLEAGFLAL--RRGWSINIGGGFHHASETKGGGFCAYADIS 262
+ + R+ VG T+ A AL G + N+ GG HHA KG G+C + D++
Sbjct: 77 -GFPWSEAMAERARHSVGATIAAARAALFDGDGVAANLAGGTHHAYAHKGSGYCVFNDVA 135
Query: 263 LLVKLLFQS-----KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEA 314
+ +L+ ++ ++VDLD HQGNG F ++ +F + KEA
Sbjct: 136 VAARLMQAEWYRVHRAGLQVLVVDLDVHQGNGTASIFRDDASVFTLSLHGAKNFPFRKEA 195
Query: 315 IRCRIELAPYTEDQHYLEKIEAGLERSLRSF--CPDIIVYNAGTDVLLNDPLGLLAISPQ 372
+EL D YL ++A L + R P + Y AG D D LG L +S +
Sbjct: 196 SDLDVELPDGCADAEYLAALDAALSEAWRRLRTPPGLAFYLAGADPHEGDRLGRLKLSAE 255
Query: 373 GIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
G+ RD VF ER VP+ + +GGY + A +
Sbjct: 256 GLAERDRRVFTALAERHVPVAVTMAGGYGRDIAVTV 291
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 16 GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-----KSISTAMIVDLDAHQ 67
G + N+ GG HHA KG G+C + D+++ +L+ ++ ++VDLD HQ
Sbjct: 108 GVAANLAGGTHHAYAHKGSGYCVFNDVAVAARLMQAEWYRVHRAGLQVLVVDLDVHQ 164
>gi|395493326|ref|ZP_10424905.1| histone deacetylase superfamily protein [Sphingomonas sp. PAMC
26617]
Length = 300
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 91/184 (49%), Gaps = 8/184 (4%)
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 281
GGT AG +AL RG++ N GG HHA G G+C + D+++ L + + ++VD
Sbjct: 94 GGTWLAGKIALERGFAANTAGGSHHALAATGAGYCVFNDLAIAAVRLAEEDGLRV-LVVD 152
Query: 282 LDAHQGNGYEKDFMNETRIFIM-----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEA 336
D HQG+G +I + KA+ + + L T D YL +E+
Sbjct: 153 CDVHQGDGTAALTAGYPQIATYSIHAEKNFPVRKARSTLD--VGLPDATGDADYLATLES 210
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
L L P II+Y AG D L ND LG LA++ G++ R+ LV A +R +P+
Sbjct: 211 TLVPMLDEVRPQIILYQAGIDPLANDRLGRLALTDDGLVARENLVARLAIDRGIPLASTV 270
Query: 397 SGGY 400
GGY
Sbjct: 271 GGGY 274
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT AG +AL RG++ N GG HHA G G+C + D+++ L + + ++VD
Sbjct: 95 GTWLAGKIALERGFAANTAGGSHHALAATGAGYCVFNDLAIAAVRLAEEDGLRV-LVVDC 153
Query: 64 DAHQ-------FSDYYFPSAHSIKRKRKVEFLKERKALE 95
D HQ + Y + +SI ++ K R L+
Sbjct: 154 DVHQGDGTAALTAGYPQIATYSIHAEKNFPVRKARSTLD 192
>gi|147674598|ref|YP_001217568.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae O395]
gi|227118489|ref|YP_002820385.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae O395]
gi|262167664|ref|ZP_06035367.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae RC27]
gi|146316481|gb|ABQ21020.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae O395]
gi|227013939|gb|ACP10149.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae O395]
gi|262023869|gb|EEY42567.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae RC27]
Length = 306
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 3/193 (1%)
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
Y VGGT AL+ G +I++ GG+HHA G GFC + D+++ S+ +
Sbjct: 99 YSVGGTCLTVEQALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVL 158
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIE 335
I+D D H G+G I + C + K A + A T D+ +L
Sbjct: 159 IIDSDVHHGDGTATLCAERDEIITLSFHCDKNFPARKPASSMDVGYANQTGDEEFLSTFI 218
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
+E ++ PD+I+Y+AG D+ +D LG L+IS I +RD + A++ +PI +
Sbjct: 219 QAVEMAVNLHRPDLILYDAGVDIHNDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACV 278
Query: 396 TSGGYLKQTARII 408
GGY + ++
Sbjct: 279 IGGGYREDHTALV 291
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL+ G +I++ GG+HHA G GFC + D+++ S+ +I+D D H
Sbjct: 111 ALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
>gi|417825291|ref|ZP_12471879.1| histone deacetylase domain protein [Vibrio cholerae HE48]
gi|340046776|gb|EGR07706.1| histone deacetylase domain protein [Vibrio cholerae HE48]
Length = 306
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 3/193 (1%)
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
+ VGGT AL+ G +I++ GG+HHA G GFC + D+++ S+ +
Sbjct: 99 HSVGGTCLTVEQALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVL 158
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIE 335
I+D D H G+G I + C + K A + A T D+ +L
Sbjct: 159 IIDSDVHHGDGTATLCAECDDIITLSFHCDKNFPARKPASSMDVGFANQTGDEEFLSTFI 218
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
+E ++ PD+I+Y+AG D+ +D LG L+IS I +RD +F A++ +PI +
Sbjct: 219 QVVEMAVNLHRPDLILYDAGVDIHNDDELGYLSISQAAIAQRDRFMFGLAKQESIPIACV 278
Query: 396 TSGGYLKQTARII 408
GGY + A ++
Sbjct: 279 IGGGYREDHAALV 291
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL+ G +I++ GG+HHA G GFC + D+++ S+ +I+D D H
Sbjct: 111 ALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
>gi|386856400|ref|YP_006260577.1| Histone deacetylase superfamily [Deinococcus gobiensis I-0]
gi|379999929|gb|AFD25119.1| Histone deacetylase superfamily [Deinococcus gobiensis I-0]
Length = 273
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 3/167 (1%)
Query: 245 HHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIME 304
HHA GF D+++ + L +I+DLD HQGNG F E+R+ +
Sbjct: 91 HHAYAGHAEGFSFLNDVAISARWLLDHAHARRILILDLDVHQGNGTASLFAGESRVLTVS 150
Query: 305 TCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLN 361
KE + L T D YL ++ + + +F PD + Y AG DVL
Sbjct: 151 VHAARNYPFDKETSGLDVNLPDGTGDAEYLAALDTRVAPVVAAFRPDFVYYLAGADVLAG 210
Query: 362 DPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII 408
D LG LA+S G+ RDE VF A R+P+VM+T+GGY ++ +++
Sbjct: 211 DQLGRLALSLDGVRARDERVFRWAARARLPLVMVTAGGYHREPEQLV 257
>gi|207742992|ref|YP_002259384.1| hypothetical protein RSIPO_01159 [Ralstonia solanacearum IPO1609]
gi|206594389|emb|CAQ61316.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609]
Length = 302
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 110/244 (45%), Gaps = 15/244 (6%)
Query: 165 EPQEVSEEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGG 223
E ++ LL+AH Y+ ++ + A E+ + + R G
Sbjct: 22 EAPRAGDDALLLAHAPDYIDAVGAGKLDPARQREI-------GFPWSPAMVERSRRSAGA 74
Query: 224 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA----MI 279
T+ A A+ G ++N+ GG HHA KGGGFC + D ++ + + + + I
Sbjct: 75 TMAACEAAMADGIAVNLAGGTHHAYADKGGGFCVFNDAAIAARWMQRRPGRAPGDFPVAI 134
Query: 280 VDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEA 336
VDLD HQGNG ++ +F + KEA + L D YLE +
Sbjct: 135 VDLDVHQGNGTASILRDDASVFTLSVHGEKNYPFRKEASDLDVGLPDGCGDAAYLEALAG 194
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
L+ F P +I+Y AG D D LG L ++ G+ RRD+ VF A +R+PI +
Sbjct: 195 ALDALAARFAPRLIIYLAGADPHEGDRLGRLKLTMDGLARRDQQVFDFAFLQRIPIAITM 254
Query: 397 SGGY 400
+GGY
Sbjct: 255 AGGY 258
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA----MI 60
T+ A A+ G ++N+ GG HHA KGGGFC + D ++ + + + + I
Sbjct: 75 TMAACEAAMADGIAVNLAGGTHHAYADKGGGFCVFNDAAIAARWMQRRPGRAPGDFPVAI 134
Query: 61 VDLDAHQ 67
VDLD HQ
Sbjct: 135 VDLDVHQ 141
>gi|83745862|ref|ZP_00942919.1| Deacetylase [Ralstonia solanacearum UW551]
gi|83727552|gb|EAP74673.1| Deacetylase [Ralstonia solanacearum UW551]
Length = 324
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 110/244 (45%), Gaps = 15/244 (6%)
Query: 165 EPQEVSEEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGG 223
E ++ LL+AH Y+ ++ + A E+ + + R G
Sbjct: 44 EAPRAGDDALLLAHAPDYIDAVGAGKLDPARQREI-------GFPWSPAMVERSRRSAGA 96
Query: 224 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA----MI 279
T+ A A+ G ++N+ GG HHA KGGGFC + D ++ + + + + I
Sbjct: 97 TMAACEAAMADGIAVNLAGGTHHAYADKGGGFCVFNDAAIAARWMQRRPGRAPGDFPVAI 156
Query: 280 VDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEA 336
VDLD HQGNG ++ +F + KEA + L D YLE +
Sbjct: 157 VDLDVHQGNGTASILRDDASVFTLSVHGEKNYPFRKEASDLDVGLPDGCGDAAYLEALAG 216
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
L+ F P +I+Y AG D D LG L ++ G+ RRD+ VF A +R+PI +
Sbjct: 217 ALDALAARFAPRLIIYLAGADPHEGDRLGRLKLTMDGLARRDQQVFDFAFLQRIPIAITM 276
Query: 397 SGGY 400
+GGY
Sbjct: 277 AGGY 280
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA----MI 60
T+ A A+ G ++N+ GG HHA KGGGFC + D ++ + + + + I
Sbjct: 97 TMAACEAAMADGIAVNLAGGTHHAYADKGGGFCVFNDAAIAARWMQRRPGRAPGDFPVAI 156
Query: 61 VDLDAHQ 67
VDLD HQ
Sbjct: 157 VDLDVHQ 163
>gi|320335190|ref|YP_004171901.1| histone deacetylase [Deinococcus maricopensis DSM 21211]
gi|319756479|gb|ADV68236.1| Histone deacetylase [Deinococcus maricopensis DSM 21211]
Length = 299
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 83/186 (44%), Gaps = 3/186 (1%)
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
R GGT A ALR GW IN+ GG HHA + GGFC D +++ +
Sbjct: 89 RRATGGTFAALHDALRVGWGINLAGGTHHAFRDRAGGFCLLNDAAMVARYALDEGLARRV 148
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKI 334
+I+DLD HQG+G F + K+ I L D YL +
Sbjct: 149 LILDLDVHQGDGTANLLGGVPHTFTLSVHGERNYPFRKQTSDLDIGLPDGVTDAEYLRVL 208
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
+ + +L +F PD++VY AG DVL D G ++ G+ R+ V R V +V
Sbjct: 209 DERVRPALEAFRPDVVVYLAGADVLAGDRFGRFQLTLDGVRERNRRVLAWCRAAGVAVVS 268
Query: 395 LTSGGY 400
+GGY
Sbjct: 269 TMAGGY 274
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A ALR GW IN+ GG HHA + GGFC D +++ + +I+DL
Sbjct: 94 GTFAALHDALRVGWGINLAGGTHHAFRDRAGGFCLLNDAAMVARYALDEGLARRVLILDL 153
Query: 64 DAHQ 67
D HQ
Sbjct: 154 DVHQ 157
>gi|219109741|ref|XP_002176624.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411159|gb|EEC51087.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]
Length = 294
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 6/171 (3%)
Query: 236 WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKS--ISTAMIVDLDAHQGNGYEKD 293
W ++ GG HHA +G GFC ++D+++ ++ + + + +DLD HQGNG
Sbjct: 124 WGAHVAGGTHHAFYDRGEGFCVFSDMAVAANVVMKRYPGVVRRILFLDLDVHQGNGNALL 183
Query: 294 FMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP-DI 349
F + +F ++ K+ IEL P D+ YL ++ L R R P D+
Sbjct: 184 FRDNDSVFTFSLHCSANYFSEKQNSDLDIELPPECSDETYLVTLKHWLNRIEREAEPFDL 243
Query: 350 IVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
+ + AG DVL D LG ++++P G+ RR++LV+ + +P+V+ GGY
Sbjct: 244 VFFQAGVDVLAQDRLGRMSLTPVGVQRRNQLVYEFCASQSLPLVICMGGGY 294
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 17 WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQ--SKSISTAMIVDLDAHQ 67
W ++ GG HHA +G GFC ++D+++ ++ + + + +DLD HQ
Sbjct: 124 WGAHVAGGTHHAFYDRGEGFCVFSDMAVAANVVMKRYPGVVRRILFLDLDVHQ 176
>gi|260219472|emb|CBA26317.1| Uncharacterized protein SYNPCC7002_A1628 [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 317
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 110/253 (43%), Gaps = 20/253 (7%)
Query: 162 NIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHV 221
+ E +E +L + HT Y+ S+ + +E L + + R +R V
Sbjct: 39 QLTEAPAATEGELALVHTPAYIDSI-----LQGTAEPAVLREIGFPWSPAMAERALR-SV 92
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS------ 275
G T+ A +A+ G + N+ GG HHA KGGGFC + D+++ ++L S
Sbjct: 93 GATVAAARVAMIEGLAANLAGGTHHAYAHKGGGFCVFNDLAVAARVLQAEWGRSRHPDGS 152
Query: 276 -----TAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTED 327
++DLD HQGNG F ++ +F + KE I L D
Sbjct: 153 RRQPLQVAVIDLDVHQGNGTASIFRHDESVFTLSLHGDKNFPFRKEDSDLDIPLPDGCAD 212
Query: 328 QHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE 387
YL +E L+ F P ++ + AG D D LG L ++ G+ RD V +
Sbjct: 213 AEYLSTLEHALQELEGRFTPGLVFFLAGADPHEGDRLGRLKLTADGLEARDRRVLDWCWQ 272
Query: 388 RRVPIVMLTSGGY 400
RR+P V+ GGY
Sbjct: 273 RRIPAVITMGGGY 285
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 11/74 (14%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS-------- 56
T+ A +A+ G + N+ GG HHA KGGGFC + D+++ ++L S
Sbjct: 95 TVAAARVAMIEGLAANLAGGTHHAYAHKGGGFCVFNDLAVAARVLQAEWGRSRHPDGSRR 154
Query: 57 ---TAMIVDLDAHQ 67
++DLD HQ
Sbjct: 155 QPLQVAVIDLDVHQ 168
>gi|59713550|ref|YP_206325.1| deacetylase [Vibrio fischeri ES114]
gi|59481798|gb|AAW87437.1| deacetylase [Vibrio fischeri ES114]
Length = 298
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 132/293 (45%), Gaps = 23/293 (7%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
++Y P Y+ L H + +K++ ++ + H + L EP +S E
Sbjct: 4 LIYHPIYSQ--LALPDGHRYPIQKYQRLYQAIQSHYSDELY--------CCFEPIPLSIE 53
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGFL 230
+ H E Y+ +L AA + P +++ L GT
Sbjct: 54 AIKQVHEENYVNALVTGTLPAAKMR---RIGFPWSESLIERTLLS-----ASGTCLTVDK 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G +I++ GG+HHA G GFC D+++ SI +I+D D H G+G
Sbjct: 106 ALENGSAIHLSGGYHHAHYDFGSGFCLVNDLAIAAHHGLSKDSIDKVLIIDSDVHHGDGT 165
Query: 291 EKDFMNETRIFIME-TCITS-KAKEAIR-CRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ I + C + A++ I + LA T+D +LE E +E ++ P
Sbjct: 166 ATLCADRGDIITLSFHCDKNFPARKPISDYDVPLAIGTQDNEFLEAFEQIVEMAINHHQP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
D+I+Y+AG D+ ++D LG L IS +G+ +RD+ + ++ +PI + GGY
Sbjct: 226 DLIIYDAGVDIHIDDELGYLNISTEGLYQRDKFMRNITAQKGIPIACVVGGGY 278
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL G +I++ GG+HHA G GFC D+++ SI +I+D D H
Sbjct: 106 ALENGSAIHLSGGYHHAHYDFGSGFCLVNDLAIAAHHGLSKDSIDKVLIIDSDVHH 161
>gi|312883681|ref|ZP_07743405.1| histone deacetylase/AcuC/AphA family protein [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309368654|gb|EFP96182.1| histone deacetylase/AcuC/AphA family protein [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 307
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 134/311 (43%), Gaps = 36/311 (11%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYL---------WKHIFNYLVEAKFITQDN 162
P++Y P Y+ L + H + K++ +F+ + W+ F++
Sbjct: 3 PLIYHPIYSQ--LPLPEGHRYPINKYRLLFDAIEERCNEQPSWRQNFHF----------- 49
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHV 221
+EP ++ + H E ++ L + A + + + + ++
Sbjct: 50 -VEPTPLTLNDVEKVHNEAFVNQLASGTLPGAKMRRI-------GFPWSEQLIKRTLTSA 101
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 281
GGT E AL G ++++ GG+HHA G GFC + D+ L + Q + I +IVD
Sbjct: 102 GGTCETVKQALSHGVAVHLSGGYHHAHYDFGSGFCLFNDLVLAARSALQLEGIGKVLIVD 161
Query: 282 LDAHQGNGYEKDFMNETRI----FIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAG 337
D H G+G + RI F + ++ E+ + T D +L +
Sbjct: 162 SDVHHGDGTASLCNGDERIVTLSFHCDKNFPARKPES-DLDVPFCRDTGDDEFLNSFTSI 220
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
+E ++ PD I+Y+AG D+ +D LG L +S I +RD +F A+ +PI +
Sbjct: 221 VEMAVHMHQPDCILYDAGVDIHTDDELGYLDVSTGAIYKRDVFMFNLAKRYHLPIACVVG 280
Query: 398 GGYLKQTARII 408
GGY + ++
Sbjct: 281 GGYRSNHSDLV 291
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT E AL G ++++ GG+HHA G GFC + D+ L + Q + I +IVD
Sbjct: 103 GTCETVKQALSHGVAVHLSGGYHHAHYDFGSGFCLFNDLVLAARSALQLEGIGKVLIVDS 162
Query: 64 DAHQ 67
D H
Sbjct: 163 DVHH 166
>gi|342306691|dbj|BAK54780.1| protein deacetylase [Sulfolobus tokodaii str. 7]
Length = 350
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 133/298 (44%), Gaps = 25/298 (8%)
Query: 139 HIFNYLWKHIFNYLVEAKFITQD-NIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISE 197
H F L + + L+E + + +I+ P+ +SEE L + HT++Y++ +K E
Sbjct: 21 HPFKSLREAMTKKLLEERGAFHEIDIVPPKVISEELLSLIHTKEYIEFIKRK-----SEE 75
Query: 198 VCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCA 257
L+ + K V GT+ A L +INIGGGFHHA ++ GFC
Sbjct: 76 GSGLLDEGDTPAFKGIFEAALIRVSGTVTAVELLQSYDHTINIGGGFHHAKRSQASGFCV 135
Query: 258 YADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIM-------------- 303
+ D++L +KL +S +VD+D H G+G + ++ ++ +
Sbjct: 136 FNDVALAIKL--AERSFKKIALVDIDGHHGDGTQYLLYDDPKVLKVSLHMFHPRFFPGTG 193
Query: 304 -ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLND 362
E I S + + I L P T D YL + ++ F PD+I G D D
Sbjct: 194 DEYEIGSGEGKGMTINIPLPPGTGDDMYLYAFNEIVVPKIKEFKPDLIFLLNGGDSYYED 253
Query: 363 PLGLLAISPQGIIRRDELVFMKARE-RRVPIVMLTSGGY-LKQTARIIADSILNLADL 418
PL L +S +G + V A + +VM GGY + TARI A SI +A L
Sbjct: 254 PLVELKLSTKGYLEVVRTVHSLAHQFANGKLVMTGGGGYNYEATARIWALSIAEIAGL 311
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A L +INIGGGFHHA ++ GFC + D++L +KL +S +VD+
Sbjct: 101 GTVTAVELLQSYDHTINIGGGFHHAKRSQASGFCVFNDVALAIKL--AERSFKKIALVDI 158
Query: 64 DAHQ 67
D H
Sbjct: 159 DGHH 162
>gi|254507752|ref|ZP_05119883.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus 16]
gi|219549277|gb|EED26271.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus 16]
Length = 307
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 141/331 (42%), Gaps = 42/331 (12%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYL---------WKHIFNYLVEAKFITQDN 162
P++Y Y+ L + H + +K++ ++ + WKH F +
Sbjct: 3 PLIYHSIYSQ--LPLPEGHRYPIQKYQLLYEVITQQRECDPRWKHAFQF----------- 49
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYH 220
+EP +S E + H Y+ +L F+ A + + P + V +
Sbjct: 50 -VEPSPLSAECVKQVHCHDYIDAL---FSGALPAPKMRRIGFPWSDTLVSRTLTS----- 100
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
GGT E + + G +I++ GG+HHA + G GFC D+ L K + I +++
Sbjct: 101 AGGTSETVEQSAKHGVAIHLSGGYHHAHKDFGSGFCLINDLVLAAKRALTLEGIEKVIVI 160
Query: 281 DLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAG 337
D D H G+G E I + C + K + L+ T D+ +L +
Sbjct: 161 DSDVHHGDGTATLCEQEENIVTLSFHCDKNFPARKPDSDLDVALSRNTGDEEFLSTFRSV 220
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
+E ++ PD+I+Y+AG D+ D LG +S + I RD+ +F A++ +PI +
Sbjct: 221 VEMAISIHQPDLILYDAGVDIHHEDELGYFDVSTKAIYERDKFMFSLAKDNGLPIACVVG 280
Query: 398 GGYLKQTARIIADSILNLADLGLISRPYNIW 428
GGY ++ + LI Y+++
Sbjct: 281 GGYRTNHGDLVP------VHMQLIHAAYDVY 305
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT E + + G +I++ GG+HHA + G GFC D+ L K + I +++D
Sbjct: 103 GTSETVEQSAKHGVAIHLSGGYHHAHKDFGSGFCLINDLVLAAKRALTLEGIEKVIVIDS 162
Query: 64 DAHQ 67
D H
Sbjct: 163 DVHH 166
>gi|15922638|ref|NP_378307.1| acetoin utilization protein AcuC [Sulfolobus tokodaii str. 7]
Length = 362
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 133/299 (44%), Gaps = 25/299 (8%)
Query: 138 KHIFNYLWKHIFNYLVEAKFITQD-NIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAIS 196
H F L + + L+E + + +I+ P+ +SEE L + HT++Y++ +K
Sbjct: 32 NHPFKSLREAMTKKLLEERGAFHEIDIVPPKVISEELLSLIHTKEYIEFIKRK-----SE 86
Query: 197 EVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFC 256
E L+ + K V GT+ A L +INIGGGFHHA ++ GFC
Sbjct: 87 EGSGLLDEGDTPAFKGIFEAALIRVSGTVTAVELLQSYDHTINIGGGFHHAKRSQASGFC 146
Query: 257 AYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIM------------- 303
+ D++L +KL +S +VD+D H G+G + ++ ++ +
Sbjct: 147 VFNDVALAIKL--AERSFKKIALVDIDGHHGDGTQYLLYDDPKVLKVSLHMFHPRFFPGT 204
Query: 304 --ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLN 361
E I S + + I L P T D YL + ++ F PD+I G D
Sbjct: 205 GDEYEIGSGEGKGMTINIPLPPGTGDDMYLYAFNEIVVPKIKEFKPDLIFLLNGGDSYYE 264
Query: 362 DPLGLLAISPQGIIRRDELVFMKARE-RRVPIVMLTSGGY-LKQTARIIADSILNLADL 418
DPL L +S +G + V A + +VM GGY + TARI A SI +A L
Sbjct: 265 DPLVELKLSTKGYLEVVRTVHSLAHQFANGKLVMTGGGGYNYEATARIWALSIAEIAGL 323
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A L +INIGGGFHHA ++ GFC + D++L +KL +S +VD+
Sbjct: 113 GTVTAVELLQSYDHTINIGGGFHHAKRSQASGFCVFNDVALAIKL--AERSFKKIALVDI 170
Query: 64 DAHQ 67
D H
Sbjct: 171 DGHH 174
>gi|196230846|ref|ZP_03129707.1| histone deacetylase superfamily [Chthoniobacter flavus Ellin428]
gi|196225187|gb|EDY19696.1| histone deacetylase superfamily [Chthoniobacter flavus Ellin428]
Length = 306
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 116/265 (43%), Gaps = 32/265 (12%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
+ P+ V+E L HT +Y+ ++K + +++ P F C G
Sbjct: 39 LTRPEPVTESDLQRVHTAEYIAAIK-TGEPRDLAQSQKFPWSPELFPSVCLTN------G 91
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
G L A ALR G S + GFHHA G GFC + + + + L S I +A ++D+
Sbjct: 92 GCLAAARQALRDGASAALVSGFHHACADHGEGFCTFNGLVIAIDALVASGEIRSAAVLDM 151
Query: 283 DAHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLE-------KIE 335
D H GNG + + E+R ++ + C +++ ++H+ + +
Sbjct: 152 DLHYGNGTAQ--LAESRPYLFNLSLYGNDFWDNFCYRDVS----ERHHADGANHVSFSLP 205
Query: 336 AGLER------------SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFM 383
AG +R L PD+I+Y AG D DP LA+ + RD VF
Sbjct: 206 AGCDRKALFAIMDQALPQLAERKPDVILYQAGADPYFEDPYSPLALDHDDLRSRDRRVFE 265
Query: 384 KARERRVPIVMLTSGGYLKQTARII 408
A+ R+PI + +GGY ++++
Sbjct: 266 FAKAHRIPIAWVLAGGYTSDVSKVV 290
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G L A ALR G S + GFHHA G GFC + + + + L S I +A ++D+
Sbjct: 92 GCLAAARQALRDGASAALVSGFHHACADHGEGFCTFNGLVIAIDALVASGEIRSAAVLDM 151
Query: 64 DAH 66
D H
Sbjct: 152 DLH 154
>gi|229513698|ref|ZP_04403160.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae TMA
21]
gi|229348879|gb|EEO13836.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae TMA
21]
Length = 306
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 3/193 (1%)
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
Y VGGT AL+ G +I++ GG+HHA G GFC + D+++ S+ +
Sbjct: 99 YSVGGTCLTVEQALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVL 158
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIE 335
I+D D H G+G I + C + K A + A T D+ +L
Sbjct: 159 IIDSDVHHGDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGDEEFLSTFI 218
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
+E ++ PD+I+Y+AG D+ +D LG L+IS I +RD + A++ +PI +
Sbjct: 219 QVVEMAVNLHRPDLILYDAGVDIHNDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACV 278
Query: 396 TSGGYLKQTARII 408
GGY + ++
Sbjct: 279 IGGGYREDHTALV 291
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL+ G +I++ GG+HHA G GFC + D+++ S+ +I+D D H
Sbjct: 111 ALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
>gi|422923349|ref|ZP_16956503.1| histone deacetylase domain protein [Vibrio cholerae BJG-01]
gi|341644088|gb|EGS68329.1| histone deacetylase domain protein [Vibrio cholerae BJG-01]
Length = 306
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 3/193 (1%)
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
+ VGGT AL+ G +I++ GG+HHA G GFC + D+++ S+ +
Sbjct: 99 HSVGGTCLTVEQALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVL 158
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIE 335
I+D D H G+G I + C + K A + A T D+ +L
Sbjct: 159 IIDSDVHHGDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGDEEFLSTFI 218
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
+E ++ PD+I+Y+AG D+ +D LG L+IS I +RD + A++ +PI +
Sbjct: 219 QVVEMAVNLHRPDLILYDAGVDIHNDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACV 278
Query: 396 TSGGYLKQTARII 408
GGY + A ++
Sbjct: 279 IGGGYREDHAALV 291
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL+ G +I++ GG+HHA G GFC + D+++ S+ +I+D D H
Sbjct: 111 ALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
>gi|15642044|ref|NP_231676.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|153820272|ref|ZP_01972939.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae NCTC
8457]
gi|153824175|ref|ZP_01976842.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae B33]
gi|227082169|ref|YP_002810720.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
M66-2]
gi|229507869|ref|ZP_04397374.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae BX
330286]
gi|229511896|ref|ZP_04401375.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae B33]
gi|229519032|ref|ZP_04408475.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae RC9]
gi|229607414|ref|YP_002878062.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
MJ-1236]
gi|254849129|ref|ZP_05238479.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae MO10]
gi|255745211|ref|ZP_05419160.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholera CIRS
101]
gi|262155929|ref|ZP_06029050.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae INDRE
91/1]
gi|298497930|ref|ZP_07007737.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae MAK
757]
gi|360035924|ref|YP_004937687.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae O1
str. 2010EL-1786]
gi|379741866|ref|YP_005333835.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
IEC224]
gi|417814079|ref|ZP_12460732.1| histone deacetylase domain protein [Vibrio cholerae HC-49A2]
gi|417817817|ref|ZP_12464446.1| histone deacetylase domain protein [Vibrio cholerae HCUF01]
gi|418335058|ref|ZP_12943971.1| histone deacetylase domain protein [Vibrio cholerae HC-06A1]
gi|418338671|ref|ZP_12947565.1| histone deacetylase domain protein [Vibrio cholerae HC-23A1]
gi|418346594|ref|ZP_12951354.1| histone deacetylase domain protein [Vibrio cholerae HC-28A1]
gi|418350352|ref|ZP_12955083.1| histone deacetylase domain protein [Vibrio cholerae HC-43A1]
gi|418355888|ref|ZP_12958607.1| histone deacetylase domain protein [Vibrio cholerae HC-61A1]
gi|419827012|ref|ZP_14350511.1| histone deacetylase domain protein [Vibrio cholerae CP1033(6)]
gi|421318129|ref|ZP_15768697.1| histone deacetylase domain protein [Vibrio cholerae CP1032(5)]
gi|421321807|ref|ZP_15772360.1| histone deacetylase domain protein [Vibrio cholerae CP1038(11)]
gi|421325608|ref|ZP_15776132.1| histone deacetylase domain protein [Vibrio cholerae CP1041(14)]
gi|421333176|ref|ZP_15783653.1| histone deacetylase domain protein [Vibrio cholerae CP1046(19)]
gi|421336765|ref|ZP_15787226.1| histone deacetylase domain protein [Vibrio cholerae CP1048(21)]
gi|421340193|ref|ZP_15790625.1| histone deacetylase domain protein [Vibrio cholerae HC-20A2]
gi|421348484|ref|ZP_15798861.1| histone deacetylase domain protein [Vibrio cholerae HC-46A1]
gi|422897146|ref|ZP_16934594.1| histone deacetylase domain protein [Vibrio cholerae HC-40A1]
gi|422903345|ref|ZP_16938319.1| histone deacetylase domain protein [Vibrio cholerae HC-48A1]
gi|422907228|ref|ZP_16942031.1| histone deacetylase domain protein [Vibrio cholerae HC-70A1]
gi|422914075|ref|ZP_16948581.1| histone deacetylase domain protein [Vibrio cholerae HFU-02]
gi|422926281|ref|ZP_16959295.1| histone deacetylase domain protein [Vibrio cholerae HC-38A1]
gi|423145602|ref|ZP_17133196.1| histone deacetylase domain protein [Vibrio cholerae HC-19A1]
gi|423150278|ref|ZP_17137592.1| histone deacetylase domain protein [Vibrio cholerae HC-21A1]
gi|423154096|ref|ZP_17141277.1| histone deacetylase domain protein [Vibrio cholerae HC-22A1]
gi|423157181|ref|ZP_17144274.1| histone deacetylase domain protein [Vibrio cholerae HC-32A1]
gi|423160750|ref|ZP_17147690.1| histone deacetylase domain protein [Vibrio cholerae HC-33A2]
gi|423165576|ref|ZP_17152302.1| histone deacetylase domain protein [Vibrio cholerae HC-48B2]
gi|423768874|ref|ZP_17713020.1| histone deacetylase domain protein [Vibrio cholerae HC-50A2]
gi|423895478|ref|ZP_17727225.1| histone deacetylase domain protein [Vibrio cholerae HC-62A1]
gi|423930915|ref|ZP_17731618.1| histone deacetylase domain protein [Vibrio cholerae HC-77A1]
gi|424003030|ref|ZP_17746105.1| histone deacetylase domain protein [Vibrio cholerae HC-17A2]
gi|424006819|ref|ZP_17749789.1| histone deacetylase domain protein [Vibrio cholerae HC-37A1]
gi|424024802|ref|ZP_17764453.1| histone deacetylase domain protein [Vibrio cholerae HC-62B1]
gi|424027687|ref|ZP_17767290.1| histone deacetylase domain protein [Vibrio cholerae HC-69A1]
gi|424586963|ref|ZP_18026542.1| histone deacetylase domain protein [Vibrio cholerae CP1030(3)]
gi|424591759|ref|ZP_18031184.1| histone deacetylase domain protein [Vibrio cholerae CP1037(10)]
gi|424595611|ref|ZP_18034932.1| histone deacetylase domain protein [Vibrio cholerae CP1040(13)]
gi|424599529|ref|ZP_18038708.1| histone deacetylase domain protein [Vibrio Cholerae CP1044(17)]
gi|424602249|ref|ZP_18041390.1| histone deacetylase domain protein [Vibrio cholerae CP1047(20)]
gi|424607222|ref|ZP_18046164.1| histone deacetylase domain protein [Vibrio cholerae CP1050(23)]
gi|424611043|ref|ZP_18049882.1| histone deacetylase domain protein [Vibrio cholerae HC-39A1]
gi|424613854|ref|ZP_18052642.1| histone deacetylase domain protein [Vibrio cholerae HC-41A1]
gi|424617831|ref|ZP_18056503.1| histone deacetylase domain protein [Vibrio cholerae HC-42A1]
gi|424622615|ref|ZP_18061120.1| histone deacetylase domain protein [Vibrio cholerae HC-47A1]
gi|424645578|ref|ZP_18083314.1| histone deacetylase domain protein [Vibrio cholerae HC-56A2]
gi|424653344|ref|ZP_18090724.1| histone deacetylase domain protein [Vibrio cholerae HC-57A2]
gi|424657167|ref|ZP_18094452.1| histone deacetylase domain protein [Vibrio cholerae HC-81A2]
gi|440710238|ref|ZP_20890889.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
4260B]
gi|443504398|ref|ZP_21071356.1| histone deacetylase domain protein [Vibrio cholerae HC-64A1]
gi|443508297|ref|ZP_21075060.1| histone deacetylase domain protein [Vibrio cholerae HC-65A1]
gi|443512139|ref|ZP_21078777.1| histone deacetylase domain protein [Vibrio cholerae HC-67A1]
gi|443515696|ref|ZP_21082207.1| histone deacetylase domain protein [Vibrio cholerae HC-68A1]
gi|443519489|ref|ZP_21085885.1| histone deacetylase domain protein [Vibrio cholerae HC-71A1]
gi|443524380|ref|ZP_21090593.1| histone deacetylase domain protein [Vibrio cholerae HC-72A2]
gi|443531976|ref|ZP_21097990.1| histone deacetylase domain protein [Vibrio cholerae HC-7A1]
gi|443535776|ref|ZP_21101653.1| histone deacetylase domain protein [Vibrio cholerae HC-80A1]
gi|443539319|ref|ZP_21105173.1| histone deacetylase domain protein [Vibrio cholerae HC-81A1]
gi|449055536|ref|ZP_21734204.1| Histone deacetylase/AcuC/AphA family protein [Vibrio cholerae O1
str. Inaba G4222]
gi|9656588|gb|AAF95190.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|126509182|gb|EAZ71776.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae NCTC
8457]
gi|126518301|gb|EAZ75526.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae B33]
gi|227010057|gb|ACP06269.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
M66-2]
gi|229343721|gb|EEO08696.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae RC9]
gi|229351861|gb|EEO16802.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae B33]
gi|229355374|gb|EEO20295.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae BX
330286]
gi|229370069|gb|ACQ60492.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
MJ-1236]
gi|254844834|gb|EET23248.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae MO10]
gi|255737041|gb|EET92437.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholera CIRS
101]
gi|262030240|gb|EEY48883.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae INDRE
91/1]
gi|297542263|gb|EFH78313.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae MAK
757]
gi|340036565|gb|EGQ97541.1| histone deacetylase domain protein [Vibrio cholerae HC-49A2]
gi|340037540|gb|EGQ98515.1| histone deacetylase domain protein [Vibrio cholerae HCUF01]
gi|341620789|gb|EGS46543.1| histone deacetylase domain protein [Vibrio cholerae HC-48A1]
gi|341620988|gb|EGS46740.1| histone deacetylase domain protein [Vibrio cholerae HC-70A1]
gi|341621824|gb|EGS47555.1| histone deacetylase domain protein [Vibrio cholerae HC-40A1]
gi|341637299|gb|EGS61987.1| histone deacetylase domain protein [Vibrio cholerae HFU-02]
gi|341646063|gb|EGS70181.1| histone deacetylase domain protein [Vibrio cholerae HC-38A1]
gi|356417082|gb|EHH70701.1| histone deacetylase domain protein [Vibrio cholerae HC-06A1]
gi|356418270|gb|EHH71873.1| histone deacetylase domain protein [Vibrio cholerae HC-21A1]
gi|356422816|gb|EHH76285.1| histone deacetylase domain protein [Vibrio cholerae HC-19A1]
gi|356428656|gb|EHH81882.1| histone deacetylase domain protein [Vibrio cholerae HC-22A1]
gi|356430313|gb|EHH83522.1| histone deacetylase domain protein [Vibrio cholerae HC-23A1]
gi|356432899|gb|EHH86094.1| histone deacetylase domain protein [Vibrio cholerae HC-28A1]
gi|356439455|gb|EHH92424.1| histone deacetylase domain protein [Vibrio cholerae HC-32A1]
gi|356444848|gb|EHH97657.1| histone deacetylase domain protein [Vibrio cholerae HC-43A1]
gi|356445491|gb|EHH98295.1| histone deacetylase domain protein [Vibrio cholerae HC-33A2]
gi|356450597|gb|EHI03314.1| histone deacetylase domain protein [Vibrio cholerae HC-48B2]
gi|356452386|gb|EHI05065.1| histone deacetylase domain protein [Vibrio cholerae HC-61A1]
gi|356647078|gb|AET27133.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae O1
str. 2010EL-1786]
gi|378795376|gb|AFC58847.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
IEC224]
gi|395916387|gb|EJH27217.1| histone deacetylase domain protein [Vibrio cholerae CP1032(5)]
gi|395917446|gb|EJH28274.1| histone deacetylase domain protein [Vibrio cholerae CP1041(14)]
gi|395918801|gb|EJH29625.1| histone deacetylase domain protein [Vibrio cholerae CP1038(11)]
gi|395928578|gb|EJH39331.1| histone deacetylase domain protein [Vibrio cholerae CP1046(19)]
gi|395931864|gb|EJH42608.1| histone deacetylase domain protein [Vibrio cholerae CP1048(21)]
gi|395939476|gb|EJH50158.1| histone deacetylase domain protein [Vibrio cholerae HC-20A2]
gi|395943063|gb|EJH53739.1| histone deacetylase domain protein [Vibrio cholerae HC-46A1]
gi|395958647|gb|EJH69126.1| histone deacetylase domain protein [Vibrio cholerae HC-56A2]
gi|395959239|gb|EJH69682.1| histone deacetylase domain protein [Vibrio cholerae HC-57A2]
gi|395961942|gb|EJH72251.1| histone deacetylase domain protein [Vibrio cholerae HC-42A1]
gi|395970729|gb|EJH80469.1| histone deacetylase domain protein [Vibrio cholerae HC-47A1]
gi|395972960|gb|EJH82534.1| histone deacetylase domain protein [Vibrio cholerae CP1030(3)]
gi|395975395|gb|EJH84886.1| histone deacetylase domain protein [Vibrio cholerae CP1047(20)]
gi|408007037|gb|EKG45148.1| histone deacetylase domain protein [Vibrio cholerae HC-39A1]
gi|408012616|gb|EKG50391.1| histone deacetylase domain protein [Vibrio cholerae HC-41A1]
gi|408030652|gb|EKG67306.1| histone deacetylase domain protein [Vibrio cholerae CP1037(10)]
gi|408031991|gb|EKG68591.1| histone deacetylase domain protein [Vibrio cholerae CP1040(13)]
gi|408041546|gb|EKG77652.1| histone deacetylase domain protein [Vibrio Cholerae CP1044(17)]
gi|408042813|gb|EKG78846.1| histone deacetylase domain protein [Vibrio cholerae CP1050(23)]
gi|408053174|gb|EKG88194.1| histone deacetylase domain protein [Vibrio cholerae HC-81A2]
gi|408607802|gb|EKK81205.1| histone deacetylase domain protein [Vibrio cholerae CP1033(6)]
gi|408633618|gb|EKL05943.1| histone deacetylase domain protein [Vibrio cholerae HC-50A2]
gi|408654347|gb|EKL25489.1| histone deacetylase domain protein [Vibrio cholerae HC-77A1]
gi|408655278|gb|EKL26403.1| histone deacetylase domain protein [Vibrio cholerae HC-62A1]
gi|408845427|gb|EKL85543.1| histone deacetylase domain protein [Vibrio cholerae HC-37A1]
gi|408845564|gb|EKL85679.1| histone deacetylase domain protein [Vibrio cholerae HC-17A2]
gi|408870259|gb|EKM09539.1| histone deacetylase domain protein [Vibrio cholerae HC-62B1]
gi|408878990|gb|EKM17983.1| histone deacetylase domain protein [Vibrio cholerae HC-69A1]
gi|439974461|gb|ELP50638.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
4260B]
gi|443431343|gb|ELS73895.1| histone deacetylase domain protein [Vibrio cholerae HC-64A1]
gi|443435239|gb|ELS81383.1| histone deacetylase domain protein [Vibrio cholerae HC-65A1]
gi|443439122|gb|ELS88837.1| histone deacetylase domain protein [Vibrio cholerae HC-67A1]
gi|443443106|gb|ELS96408.1| histone deacetylase domain protein [Vibrio cholerae HC-68A1]
gi|443446907|gb|ELT03563.1| histone deacetylase domain protein [Vibrio cholerae HC-71A1]
gi|443449714|gb|ELT10005.1| histone deacetylase domain protein [Vibrio cholerae HC-72A2]
gi|443457366|gb|ELT24763.1| histone deacetylase domain protein [Vibrio cholerae HC-7A1]
gi|443461052|gb|ELT32126.1| histone deacetylase domain protein [Vibrio cholerae HC-80A1]
gi|443465419|gb|ELT40079.1| histone deacetylase domain protein [Vibrio cholerae HC-81A1]
gi|448264575|gb|EMB01812.1| Histone deacetylase/AcuC/AphA family protein [Vibrio cholerae O1
str. Inaba G4222]
Length = 306
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 3/193 (1%)
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
Y VGGT AL+ G +I++ GG+HHA G GFC + D+++ S+ +
Sbjct: 99 YSVGGTCLTVEQALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVL 158
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIE 335
I+D D H G+G I + C + K A + A T D+ +L
Sbjct: 159 IIDSDVHHGDGTATLCAERDEIITLSFHCDKNFPARKPASSMDVGYANQTGDEEFLSTFI 218
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
+E ++ PD+I+Y+AG D+ +D LG L+IS I +RD + A++ +PI +
Sbjct: 219 QVVEMAVNLHRPDLILYDAGVDIHNDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACV 278
Query: 396 TSGGYLKQTARII 408
GGY + ++
Sbjct: 279 IGGGYREDHTALV 291
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL+ G +I++ GG+HHA G GFC + D+++ S+ +I+D D H
Sbjct: 111 ALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
>gi|209809743|ref|YP_002265282.1| hypothetical protein VSAL_II0998 [Aliivibrio salmonicida LFI1238]
gi|208011306|emb|CAQ81752.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
Length = 300
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 11/177 (6%)
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
A+ G +I++ GG+HHA G GFC + D+ + + + I T +IVD D H G+G
Sbjct: 106 AVEYGAAIHLSGGYHHAHYDFGSGFCLFNDLVVAAHHALKQECIETVLIVDSDVHHGDGT 165
Query: 291 EKDFMNETRIFIMETCITSKAKEAIRCRIELAPY-------TEDQHYLEKIEAGLERSLR 343
++ I ++ + R ++ Y T+D +LE + +E ++
Sbjct: 166 ATLCADKDDIIT----VSFHCDKNFPARKPMSNYDVPLFIGTQDDEFLEAFQQVVEMAIN 221
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
PD+I+Y+AG D+ +D LG L +S +G+ +RD + A+++ +PI + GGY
Sbjct: 222 HHQPDLIIYDAGVDIHCDDELGYLNVSTKGLYQRDCWMSTTAKQKNIPIACVVGGGY 278
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
A+ G +I++ GG+HHA G GFC + D+ + + + I T +IVD D H
Sbjct: 106 AVEYGAAIHLSGGYHHAHYDFGSGFCLFNDLVVAAHHALKQECIETVLIVDSDVHH 161
>gi|386333349|ref|YP_006029518.1| deacetylase [Ralstonia solanacearum Po82]
gi|334195797|gb|AEG68982.1| Deacetylase [Ralstonia solanacearum Po82]
Length = 324
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 124/291 (42%), Gaps = 26/291 (8%)
Query: 119 YNVHF-FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIA 177
Y HF L H F +K+ + + + ++ E ++ LL+A
Sbjct: 7 YTDHFVLPLPPGHRFPMRKYSLLRERIAAEVPGLVLH----------EAPRAGDDALLLA 56
Query: 178 HTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGW 236
H Y+ ++ + A E+ + + R G T+ A A+ G
Sbjct: 57 HAPDYIDAVGAGKLDPARQREI-------GFPWSPAMVERSRRSAGATMAACEAAMADGI 109
Query: 237 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST----AMIVDLDAHQGNGYEK 292
++N+ GG HHA KGGGFC + D ++ + + + + IVDLD HQGNG
Sbjct: 110 AVNLAGGTHHAYADKGGGFCVFNDAAIAARWMQRRPGRAPEDFPVAIVDLDVHQGNGTAS 169
Query: 293 DFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDI 349
++ +F + KEA + L D YLE + L+ F P +
Sbjct: 170 ILRDDASVFTLSVHGEKNYPFRKEASDLDVGLPDGCGDAAYLEALAGALDALAARFAPCL 229
Query: 350 IVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
I+Y AG D D LG L ++ G+ RRD+ VF A +R+PI + +GGY
Sbjct: 230 IIYLAGADPHEGDRLGRLKLTMDGLARRDQQVFDFAFLQRIPIAITMAGGY 280
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS----TAMI 60
T+ A A+ G ++N+ GG HHA KGGGFC + D ++ + + + + I
Sbjct: 97 TMAACEAAMADGIAVNLAGGTHHAYADKGGGFCVFNDAAIAARWMQRRPGRAPEDFPVAI 156
Query: 61 VDLDAHQ 67
VDLD HQ
Sbjct: 157 VDLDVHQ 163
>gi|224006361|ref|XP_002292141.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972660|gb|EED90992.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 299
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 92/185 (49%), Gaps = 19/185 (10%)
Query: 236 WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFM 295
WS ++ GG HHA G GFC ++DI++ +L Q+ I +I+DLD HQGNG K F
Sbjct: 116 WSAHVAGGTHHAFSDYGEGFCIFSDIAVAANVLLQN-GIRRILIIDLDVHQGNGNAKLFD 174
Query: 296 NETRIFIMETCITSK---AKEAIRCRIELAPYTEDQ-------HYLEKIEA-------GL 338
+ ++ KE IEL D+ H+L +IE G
Sbjct: 175 GNSDVWTFSMHCQGNYFSKKETSDLDIELPIGCGDETYISTLSHWLRRIEQHPFDEEEGS 234
Query: 339 ERSLRSFCP-DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
E + P D+I Y AG D+ +D LG L+I+ +G+ RR+ LV+ A R P+V+
Sbjct: 235 EDDTKVKKPFDLIFYQAGVDIHEDDRLGRLSITSEGMSRRNSLVYDFADRMRAPLVITMG 294
Query: 398 GGYLK 402
GGY K
Sbjct: 295 GGYPK 299
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 17 WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
WS ++ GG HHA G GFC ++DI++ +L Q+ I +I+DLD HQ
Sbjct: 116 WSAHVAGGTHHAFSDYGEGFCIFSDIAVAANVLLQN-GIRRILIIDLDVHQ 165
>gi|153217599|ref|ZP_01951280.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae 1587]
gi|153803619|ref|ZP_01958205.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
MZO-3]
gi|124113455|gb|EAY32275.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae 1587]
gi|124120845|gb|EAY39588.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
MZO-3]
Length = 306
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 3/193 (1%)
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
+ VGGT AL+ G +I++ GG+HHA G GFC + D+++ S+ +
Sbjct: 99 HSVGGTCLTVEQALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVL 158
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIE 335
I+D D H G+G I + C + K A + A T D+ +L
Sbjct: 159 IIDSDVHHGDGTATLCAECDDIITLSFHCDKNFPARKPASSMDVGFANQTGDEEFLSTFI 218
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
+E ++ PD+I+Y+AG D+ +D LG L+IS I +RD + A+++ +PI +
Sbjct: 219 QVVEMAVNLHRPDLILYDAGVDIHNDDELGYLSISQAAIAQRDRFMLGLAKQQSIPIACV 278
Query: 396 TSGGYLKQTARII 408
GGY + A ++
Sbjct: 279 IGGGYREDHAALV 291
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL+ G +I++ GG+HHA G GFC + D+++ S+ +I+D D H
Sbjct: 111 ALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
>gi|268315689|ref|YP_003289408.1| histone deacetylase superfamily protein [Rhodothermus marinus DSM
4252]
gi|262333223|gb|ACY47020.1| histone deacetylase superfamily [Rhodothermus marinus DSM 4252]
Length = 378
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 124/281 (44%), Gaps = 40/281 (14%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P+Y + F E HPF + LW L+EA I P E +
Sbjct: 3 PVVYHPDYLTYCFGPE--HPFSPVR----LEMLWT-----LLEA-LGCAPTPIRPPEATR 50
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPL-----VAVPNYFVQKCYLRPMRYHVGGTLE 226
+L H E Y+ ++ A+ E P + P+ V R R VGGTL
Sbjct: 51 ADVLRVHAEDYVARVE----AASRGEYVPDAEAFGLDTPDVPVFPDMDRAARILVGGTLH 106
Query: 227 -AGFLALRRGWSI-NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDA 284
A +A R ++ +GGGFHHA + GFC Y D+S+ ++ L + + A I D+D
Sbjct: 107 GARLIADGRATTVLQLGGGFHHAHPARASGFCVYNDLSIAIRALTDA-GLRVAYI-DIDV 164
Query: 285 HQGNG-----YEKDF-----MNETRIFIMETC-----ITSKAKEAIRCRIELAPYTEDQH 329
H G+G Y +D ++ET ++ I + + L P+T+D+
Sbjct: 165 HHGDGVQAIHYREDTVLTISLHETGQYLFPGTGFIDEIGEGRGQGFSLNVPLQPFTDDES 224
Query: 330 YLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAIS 370
YLE E + +L F PD++V G D DPL L +S
Sbjct: 225 YLEVFERVVPHALVMFRPDVLVVQCGADAHFQDPLADLLLS 265
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 19 INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+ +GGGFHHA + GFC Y D+S+ ++ L + + A I D+D H
Sbjct: 120 LQLGGGFHHAHPARASGFCVYNDLSIAIRALTDA-GLRVAYI-DIDVHH 166
>gi|421351773|ref|ZP_15802138.1| histone deacetylase domain protein [Vibrio cholerae HE-25]
gi|395952218|gb|EJH62832.1| histone deacetylase domain protein [Vibrio cholerae HE-25]
Length = 306
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 3/193 (1%)
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
+ VGGT AL+ G +I++ GG+HHA G GFC + D+++ S+ +
Sbjct: 99 HSVGGTCLTVEQALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVL 158
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIE 335
I+D D H G+G I + C + K A + A T D+ +L
Sbjct: 159 IIDSDVHHGDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGDEEFLSTFI 218
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
+E ++ PD+I+Y+AG D+ +D LG L+IS I +RD + A++ +PI +
Sbjct: 219 QVVEMAVNLHRPDLILYDAGVDIHNDDELGYLSISQAAIAQRDLFMLGLAKQESIPIACV 278
Query: 396 TSGGYLKQTARII 408
GGY + A ++
Sbjct: 279 IGGGYREDHAALV 291
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL+ G +I++ GG+HHA G GFC + D+++ S+ +I+D D H
Sbjct: 111 ALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
>gi|359426187|ref|ZP_09217274.1| putative acetoin utilization protein [Gordonia amarae NBRC 15530]
gi|358238664|dbj|GAB06856.1| putative acetoin utilization protein [Gordonia amarae NBRC 15530]
Length = 377
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 108/252 (42%), Gaps = 39/252 (15%)
Query: 162 NIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH- 220
+++ P + LL AHT YL ++K + + P V VP + P+ H
Sbjct: 23 DLVAPDPADDGLLLRAHTADYLAAVKQAPD--------PSVEVPGGYGLGGEDNPVFEHM 74
Query: 221 -------VGGTLEAGFLALRRG---WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQ 270
VGGTL A A+ G +++IGGG HHA GFC Y D+++ + L
Sbjct: 75 HEAASVIVGGTLRAAR-AIATGEATRAVSIGGGMHHAMPESAAGFCLYNDVAVAISWLLD 133
Query: 271 SKSISTAMIVDLDAHQGNGYEKDFMNETRIFIME-----------TCITSKAKEAIRC-- 317
+ I +D+D H G+G ++ F ++ R+ + T +S+ E
Sbjct: 134 NTDIQRVAYIDVDVHHGDGVQRAFADDPRVLTISVHQDPRTLWPCTGYSSEVGEGAAAGS 193
Query: 318 --RIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGII 375
+ L P T D H+L A + + + F PDIIV G D DPLG ++ G
Sbjct: 194 IVNLPLPPGTRDTHWLRAYHAVVPQVVSVFGPDIIVSQCGVDTHRADPLGEFEMTVDG-- 251
Query: 376 RRDELVFMKARE 387
F+ RE
Sbjct: 252 --QRAAFLAMRE 261
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+++IGGG HHA GFC Y D+++ + L + I +D+D H
Sbjct: 100 AVSIGGGMHHAMPESAAGFCLYNDVAVAISWLLDNTDIQRVAYIDVDVHH 149
>gi|262166159|ref|ZP_06033896.1| histone deacetylase/AcuC/AphA family protein [Vibrio mimicus VM223]
gi|262025875|gb|EEY44543.1| histone deacetylase/AcuC/AphA family protein [Vibrio mimicus VM223]
Length = 306
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 3/191 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
VGGT AL +I++ GG+HHA G GFC + D+++ + +I+
Sbjct: 101 VGGTCLTVERALLSDVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLSGVDKVLII 160
Query: 281 DLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAG 337
D D H G+G I + C + K A IE T D+ +L
Sbjct: 161 DSDVHHGDGTATLCAECDEIITLSFHCDKNFPARKPASDMDIEFTKQTGDEEFLSTFTQV 220
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
+E ++ PD+I+Y+AG D+ +D LG L+IS I RRD + A++ +PI +
Sbjct: 221 VEMAVNLHQPDLIIYDAGVDIHSDDELGYLSISQAAIARRDCFMLSLAKQSNIPIACVIG 280
Query: 398 GGYLKQTARII 408
GGY + A ++
Sbjct: 281 GGYRENHASLV 291
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL +I++ GG+HHA G GFC + D+++ + +I+D D H
Sbjct: 111 ALLSDVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLSGVDKVLIIDSDVHH 166
>gi|383935850|ref|ZP_09989283.1| histone deacetylase superfamily protein [Rheinheimera nanhaiensis
E407-8]
gi|383703169|dbj|GAB59374.1| histone deacetylase superfamily protein [Rheinheimera nanhaiensis
E407-8]
Length = 313
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 123/252 (48%), Gaps = 15/252 (5%)
Query: 162 NIIEPQEVSEEQLLIAHTEKYLKSLK-WSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH 220
+ EP VSE L H Y++SLK S + A+ + P + + Y R +
Sbjct: 48 QLAEP--VSEAALSQVHCPTYIQSLKDGSIDAKAMRRI----GFP--WSAQLYQRSL-CS 98
Query: 221 VGGTLEAGFLALRRGW-SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMI 279
VGGT++ A+ G ++++ GG+HHA +G GFC + D+ + K L + + + ++
Sbjct: 99 VGGTVQTAQAAVDTGGIALHLSGGYHHAFYAEGSGFCLFNDLVVAAKTLLK-QGLDKILL 157
Query: 280 VDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEA 336
+DLD HQG+G +E RI K+ I LA D YL +
Sbjct: 158 LDLDVHQGDGSALLLADEPRIISCSVHCEKNFPYRKQQSDWDIALAKDCSDDEYLTAVGQ 217
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
L L PD+++Y+AG D+ +D LGLL IS + +RD V + ++R +P+ +
Sbjct: 218 SLSSLLNWHQPDLVLYDAGVDIHRDDELGLLNISTAALYQRDLQVLQQCQQRSIPVAAVI 277
Query: 397 SGGYLKQTARII 408
GGY + A ++
Sbjct: 278 GGGYQRNVAALV 289
>gi|119486182|ref|ZP_01620242.1| histone deacetylase/AcuC/AphA family protein [Lyngbya sp. PCC 8106]
gi|119456673|gb|EAW37802.1| histone deacetylase/AcuC/AphA family protein [Lyngbya sp. PCC 8106]
Length = 305
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 127/307 (41%), Gaps = 34/307 (11%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PIVY +Y L H F K++ ++ L D +IEP +V
Sbjct: 4 PIVYHSDY---VAPLLPGHRFPMSKFRLLYQMLLA--------------DEVIEPSQVHT 46
Query: 172 EQLL------IAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGT 224
+L + H Y+++ + + + A + L P + C VGG
Sbjct: 47 PELPPSEWIELVHDRDYVQAYCQGTLDPKAQRRIG-LPWSPALANRTCIA------VGGA 99
Query: 225 LEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDA 284
+ LAL G + N GG HHA G GFC + DI++ + + +I+DLD
Sbjct: 100 VLTAKLALSHGLACNTAGGTHHAFPNLGTGFCIFNDIAIAARTIQNLGLAPKILILDLDV 159
Query: 285 HQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERS 341
HQG+ F ++ +F + K+ + L ED+ YL + LE
Sbjct: 160 HQGDATAFIFQDDPSVFTFSMHCEANFPARKQKSDLDVGLPVGMEDEAYLYTLGKYLEDL 219
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYL 401
L PD++ Y+AG D ++D LG LA+S G+ RR+ V P+ + GGY
Sbjct: 220 LSEVKPDLVFYDAGVDTHVDDRLGKLALSDTGLWRREMQVLSSCVRLGYPVAGIIGGGYC 279
Query: 402 KQTARII 408
A ++
Sbjct: 280 DDMAALV 286
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G + LAL G + N GG HHA G GFC + DI++ + + +I+DL
Sbjct: 98 GAVLTAKLALSHGLACNTAGGTHHAFPNLGTGFCIFNDIAIAARTIQNLGLAPKILILDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|421898145|ref|ZP_16328512.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
gi|206589351|emb|CAQ36313.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
Length = 302
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 109/244 (44%), Gaps = 15/244 (6%)
Query: 165 EPQEVSEEQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGG 223
E ++ LL+AH Y+ ++ + A E+ + + R G
Sbjct: 22 EAPRAGDDALLLAHAPDYIDAVGAGKLDPARQREI-------GFPWSPAMVERSRRSAGA 74
Query: 224 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA----MI 279
T+ A A+ G ++N+ GG HHA KGGGFC + D ++ + + + I
Sbjct: 75 TMAACEAAMADGIAVNLAGGTHHAYADKGGGFCVFNDAAIAALWMQRRPGRAPGDFPVAI 134
Query: 280 VDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEA 336
VDLD HQGNG ++ +F + KEA + L D YLE +
Sbjct: 135 VDLDVHQGNGTASILRDDASVFTLSVHGEKNYPFRKEASDLDVGLPDGCGDAAYLEALAG 194
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
L+ F P +I+Y AG D D LG L ++ G+ RRD+ VF A +R+PI +
Sbjct: 195 ALDALAARFAPRLIIYLAGADPHEGDRLGRLKLTMDGLARRDQQVFDFAFLQRIPIAITM 254
Query: 397 SGGY 400
+GGY
Sbjct: 255 AGGY 258
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA----MI 60
T+ A A+ G ++N+ GG HHA KGGGFC + D ++ + + + I
Sbjct: 75 TMAACEAAMADGIAVNLAGGTHHAYADKGGGFCVFNDAAIAALWMQRRPGRAPGDFPVAI 134
Query: 61 VDLDAHQ 67
VDLD HQ
Sbjct: 135 VDLDVHQ 141
>gi|255081060|ref|XP_002504096.1| histone deacetylase [Micromonas sp. RCC299]
gi|226519363|gb|ACO65354.1| histone deacetylase [Micromonas sp. RCC299]
Length = 805
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 14/196 (7%)
Query: 221 VGGTLEAGFLALRRGWSI----NIGGGFHHASETKGGGFCAYADISLLVKLLFQS----- 271
GGT+ A LR G + I GG HHA KG GFC + DI++ + +
Sbjct: 158 TGGTVAATHDVLRPGTTAKCAAQIAGGTHHAFRDKGEGFCVFNDIAVAATMALRKYPARF 217
Query: 272 -KSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCR----IELAPYTE 326
+++DLD HQGNG K F ++ R+ + R +++ T
Sbjct: 218 EGCAHPILVIDLDVHQGNGTAKIFEDDPRVITFSAHGAGNYPWKTKMRSDHDVDVPDGTG 277
Query: 327 DQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKAR 386
D+ Y+ +E L R ++ P ++ + AG D L D G L ++ G++RR+ +VF +
Sbjct: 278 DKEYIAMLEEWLPRLFETYDPKLVYFQAGVDALAVDSFGKLKMTRAGMLRRNHMVFDECL 337
Query: 387 ERRVPIVMLTSGGYLK 402
R VP+V+ GGY +
Sbjct: 338 RRDVPLVITMGGGYSR 353
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 4 GTLEAGFLALRRGWSI----NIGGGFHHASETKGGGFCAYADISLLVKLLFQ------SK 53
GT+ A LR G + I GG HHA KG GFC + DI++ + +
Sbjct: 160 GTVAATHDVLRPGTTAKCAAQIAGGTHHAFRDKGEGFCVFNDIAVAATMALRKYPARFEG 219
Query: 54 SISTAMIVDLDAHQ 67
+++DLD HQ
Sbjct: 220 CAHPILVIDLDVHQ 233
>gi|443243613|ref|YP_007376838.1| deacetylase [Nonlabens dokdonensis DSW-6]
gi|442801012|gb|AGC76817.1| deacetylase [Nonlabens dokdonensis DSW-6]
Length = 307
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 133/310 (42%), Gaps = 31/310 (10%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
+PI + P Y L + H F K++ + L L E I D EP ++
Sbjct: 2 FPIAFHPIYQ---HPLPEGHRFPMLKYELLPQQL-------LHEGTAIETD-FFEPSKLC 50
Query: 171 EE-QLLIAHTEKYLKSLK-WSFNVAAISEVC-PLVAVPNYFVQKCYLRPMRYHVGGTLEA 227
E +L HT++YL+ LK + + A ++ PL A + R +R GT+E
Sbjct: 51 NEVDVLRVHTDQYLEDLKELTLDKRAARKLGFPLSA-------QLVERELRI-AQGTIEG 102
Query: 228 GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQG 287
A ++N+ GG HHA G FC D ++ + L +IVDLD HQG
Sbjct: 103 CLKAYDHRVAMNVAGGTHHAYTDHGEAFCLLNDQAIAARYLQHHGLAEKVLIVDLDVHQG 162
Query: 288 NGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRS 344
NG + F N+ +F KE I + ED +YL +++ L +
Sbjct: 163 NGTAEIFQNDDSVFTFSMHGAGNYPFKKEQSDLDIAIPDGYEDDYYLSELKNTLPDLIAQ 222
Query: 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDEL---VFMKARERR---VPIVMLTSG 398
PD I Y G DVL +D LG L+++ G RD F KAR + +P+ G
Sbjct: 223 EQPDFIFYLCGVDVLESDKLGKLSMTLDGCKERDRFSLSAFAKARTKTNAIIPVQCSMGG 282
Query: 399 GYLKQTARII 408
GY + II
Sbjct: 283 GYSPEIKTII 292
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+E A ++N+ GG HHA G FC D ++ + L +IVDL
Sbjct: 98 GTIEGCLKAYDHRVAMNVAGGTHHAYTDHGEAFCLLNDQAIAARYLQHHGLAEKVLIVDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|291295221|ref|YP_003506619.1| histone deacetylase superfamily protein [Meiothermus ruber DSM
1279]
gi|290470180|gb|ADD27599.1| histone deacetylase superfamily [Meiothermus ruber DSM 1279]
Length = 378
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 142/351 (40%), Gaps = 60/351 (17%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P+Y ++ F + HPF + + +EP + +
Sbjct: 4 PVVYSPQYQLYNFGPQ--HPFSPLR----------LEMLLDLLEHLGPPLQFVEPAQATR 51
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYL-------RPMRYHVGGT 224
E++ H E +++ V A PL +Y + R+ VGGT
Sbjct: 52 EEVRSVHLESFVR------RVEAAGRGEPLPDFDHYGLGTADTPIFPGMDEAARWLVGGT 105
Query: 225 LEAGFL----ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
L A + A R + +GGG HHA + GFC Y D+S+ ++ L + + + A I
Sbjct: 106 LSAARMVSSGAARE--VLQLGGGLHHAQKDLASGFCVYNDLSIAIRHLTE-QGLRVAYI- 161
Query: 281 DLDAHQGNGYEKDFMNETRIFIM--------------ETCITSKAKEAIR-CRIELAPYT 325
D+D H G+G + +E + T KA+ R I L P+T
Sbjct: 162 DIDVHHGDGVQWIHYDEPNVLTFSIHESGRYLYPGTGHTHEIGKAQGTGRKLNIPLEPFT 221
Query: 326 EDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQG------IIRRDE 379
ED YLE ++ GLE +LR F PD++V G D DPL + ++ Q ++R+
Sbjct: 222 EDDSYLEVLQMGLEPALRWFRPDVLVVQCGADAHFQDPLAEILLTTQAYAKIFPLLRQYA 281
Query: 380 LVFMKARERRVPIVMLTSGGY-LKQTARIIADSILNLADLGLISRPYNIWF 429
F R V GGY L T+RI A L L L L W
Sbjct: 282 AAFAGGR-----AVYTLGGGYSLDATSRIWALLYLTLQGLPLPDHLPEPWL 327
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 19 INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+ +GGG HHA + GFC Y D+S+ ++ L + + + A I D+D H
Sbjct: 121 LQLGGGLHHAQKDLASGFCVYNDLSIAIRHLTE-QGLRVAYI-DIDVHH 167
>gi|445059378|ref|YP_007384782.1| histone deacetylase family protein [Staphylococcus warneri SG1]
gi|443425435|gb|AGC90338.1| histone deacetylase family protein [Staphylococcus warneri SG1]
Length = 386
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 146/323 (45%), Gaps = 37/323 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L ++A+F+T++NI+EP+ +++++ + H Y+
Sbjct: 18 YRFNNEHPFNQMRLKLTTELL--------LDAQFLTKENILEPRIATDDEIGLIHKYDYI 69
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWS-- 237
+++K + + +E V R M H VGG L + ++
Sbjct: 70 QAIKHASHGILSAEEAKKYGFNEDTVP---FRHMHQHCARIVGGALNLADKIMDGTYTNG 126
Query: 238 INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNE 297
++GGG HHA + GFC Y D+++ + L + MI+D DAH G+G + F
Sbjct: 127 CHLGGGLHHALAGRANGFCIYNDVAITAQYLVNRYN-QRVMIIDTDAHHGDGTQWSFYTS 185
Query: 298 TRIF---IMETC---------ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERSL 342
+ I ET T + ++ + L PYTED+ +LE ++ +E +
Sbjct: 186 NEVLTYSIHETGKFLFPGSGHYTERGEDIGYGYTVNVPLEPYTEDESFLESFKSTVEPVI 245
Query: 343 RSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGYL 401
+F PDII+ G D+ DPL ++ + + ++ + + I+M GGY
Sbjct: 246 AAFKPDIILSVNGVDIHYRDPLTHMSCTLSSLYHLPYMLKDLAEKYTENKIIMFGGGGY- 304
Query: 402 KQTARIIADSILNLADLGLISRP 424
R++ + +L L LI+ P
Sbjct: 305 -NLWRVVPRAWSHLY-LSLINEP 325
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y D+++ + L + MI+D DAH
Sbjct: 128 HLGGGLHHALAGRANGFCIYNDVAITAQYLVNRYN-QRVMIIDTDAHH 174
>gi|358637882|dbj|BAL25179.1| histone deacetylase family protein [Azoarcus sp. KH32C]
Length = 329
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 110/286 (38%), Gaps = 18/286 (6%)
Query: 119 YNVHF-FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIA 177
Y HF L H F +K+ + L + E+ FI P S+ ++L A
Sbjct: 18 YADHFVLPLPPGHRFPMEKYSRLRARLAAS--GHFGESDFIV------PTAASDTEILRA 69
Query: 178 HTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWS 237
H YL A P + R G TL A AL G S
Sbjct: 70 HDAGYLSRAASGRLEPAEQRRIGFPWTPQMIERS------RRSAGATLAACRRALTEGCS 123
Query: 238 INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNE 297
N+ GG HHA G GFC + D ++ + +VD D HQG+G
Sbjct: 124 ANLAGGTHHAHRDFGSGFCVFNDAAIAALAMQAEGLARKVAVVDCDVHQGDGTATILAGR 183
Query: 298 TRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNA 354
+F + K +EL T D YL + L F PD+++Y A
Sbjct: 184 RDLFTLSLHGAKNFPFRKAVSDLDVELPDGTGDSAYLAALNDALSDLFSRFEPDLVIYLA 243
Query: 355 GTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
G D D LG LA++ G+ RD+LV + R +P+ + +GGY
Sbjct: 244 GADPFEGDRLGRLALTFDGLAARDQLVLGRCFGRGIPVAVAMAGGY 289
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%)
Query: 5 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
TL A AL G S N+ GG HHA G GFC + D ++ + +VD D
Sbjct: 110 TLAACRRALTEGCSANLAGGTHHAHRDFGSGFCVFNDAAIAALAMQAEGLARKVAVVDCD 169
Query: 65 AHQ 67
HQ
Sbjct: 170 VHQ 172
>gi|320451507|ref|YP_004203603.1| deacetylase [Thermus scotoductus SA-01]
gi|320151676|gb|ADW23054.1| deacetylase [Thermus scotoductus SA-01]
Length = 293
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 117/241 (48%), Gaps = 10/241 (4%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
I+ EV E L +AH +Y++ L F + + +P LR + G
Sbjct: 37 ILPAPEVPREALHLAHRPEYVEKL---FTEGLSRQESLRLGLP---FSPSLLRRALFAAG 90
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
GTL A AL G +N+ GG HHA + G+ + D+++ V L + ++VDL
Sbjct: 91 GTLAAARDALELGLGLNLSGGTHHAYPDRAEGYSLFNDVAVAVAWLRREGFRGRVLVVDL 150
Query: 283 DAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLE 339
DAHQGNG F + +F + KE + L D+ YL ++ LE
Sbjct: 151 DAHQGNGTAVFFQEDPTVFTLSLHGERNYPLRKERSDLDVGLPDGVGDEAYLYALDEALE 210
Query: 340 RSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGG 399
+ ++F P+++ YNAG DVL D G L +S +G+ +RDE VF + VP+V++ GG
Sbjct: 211 IA-QAFRPELVFYNAGVDVLKGDRFGRLGLSLEGVRKRDERVFRMVKTLGVPLVVVMGGG 269
Query: 400 Y 400
Y
Sbjct: 270 Y 270
>gi|386361023|ref|YP_006059268.1| deacetylase [Thermus thermophilus JL-18]
gi|383510050|gb|AFH39482.1| deacetylase, histone deacetylase/acetoin utilization protein
[Thermus thermophilus JL-18]
Length = 375
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 141/320 (44%), Gaps = 41/320 (12%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
++YR EY ++ F + HPF + + + L++A Q N + P E + E
Sbjct: 2 VIYRDEYRLYNFGPD--HPFSPVRLE---------MLTSLLQALEAWQ-NPLAPPEATRE 49
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCP-----LVAVPNYFVQKCYLRPMRYHVGGTLEA 227
++L H+E+ +K ++ A+ E+ P + + V R R VGGTLE
Sbjct: 50 EVLTVHSERLVKRVE----AASRGELYPDLEHYGLGTGDTPVFPGMDRAARILVGGTLEG 105
Query: 228 GFLALR-RGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 286
L + +GGG HHA + GFC Y D+S+ ++ +++ VD+D H
Sbjct: 106 ARRILAGEKRVLQLGGGLHHAQYDRASGFCVYNDLSVAIR--HMTRAGLRVAYVDIDVHH 163
Query: 287 GNGYEKDFMNETRIFIMETC---------------ITSKAKEAIRCRIELAPYTEDQHYL 331
G+G + E + + I A + + L P+TED+ YL
Sbjct: 164 GDGVQWIHYEEGEVLTLSLHESGRYLFPGTGHVYEIGRGAGLGKKLNLPLEPFTEDESYL 223
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
E EA + +L++F PD++V AG D DPL L ++ + R L+ A
Sbjct: 224 EVFEALVPWALKAFRPDVLVVQAGADAHYLDPLADLLLTTRAYERLFRLLLEYAEAYAGG 283
Query: 392 IVMLT-SGGY-LKQTARIIA 409
V+ T GGY L T R+ A
Sbjct: 284 RVLFTLGGGYSLDGTVRVWA 303
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 19 INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+ +GGG HHA + GFC Y D+S+ ++ +++ VD+D H
Sbjct: 117 LQLGGGLHHAQYDRASGFCVYNDLSVAIR--HMTRAGLRVAYVDIDVHH 163
>gi|262189882|ref|ZP_06048207.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae CT
5369-93]
gi|262034235|gb|EEY52650.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae CT
5369-93]
Length = 295
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 94/193 (48%), Gaps = 3/193 (1%)
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
+ VGGT AL+ G +I++ GG+HHA G GFC + D+++ S+ +
Sbjct: 99 HSVGGTCLTVEQALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVL 158
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIE 335
I+D D H G+G I + C + K A + A T D+ +L
Sbjct: 159 IIDSDVHHGDGTATLCAECDDIITLSFHCDKNFPARKPASSMDVGFANQTGDEEFLSTFI 218
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
+E ++ PD+I+Y+AG D+ +D LG L+IS I +RD + A+++ +PI +
Sbjct: 219 QVVEMAVNLHRPDLILYDAGVDIHNDDELGYLSISQAAIAQRDRFMLGLAKQQSIPIACV 278
Query: 396 TSGGYLKQTARII 408
GGY + ++
Sbjct: 279 IGGGYREDHTALV 291
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL+ G +I++ GG+HHA G GFC + D+++ S+ +I+D D H
Sbjct: 111 ALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
>gi|289550511|ref|YP_003471415.1| NAD-independent protein deacetylase AcuC [Staphylococcus
lugdunensis HKU09-01]
gi|315658002|ref|ZP_07910876.1| acetoin utilization protein AcuC [Staphylococcus lugdunensis
M23590]
gi|289180043|gb|ADC87288.1| NAD-independent protein deacetylase AcuC [Staphylococcus
lugdunensis HKU09-01]
gi|315497038|gb|EFU85359.1| acetoin utilization protein AcuC [Staphylococcus lugdunensis
M23590]
Length = 385
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 128/299 (42%), Gaps = 33/299 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ + HPF+ + K L A ++ NI+EP + +L + H Y+
Sbjct: 19 YRFDNHHPFNQMRLKLTTELL--------QTAGYLNNSNIVEPPIATTNELTLVHQYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGW--S 237
+++K + + ++ + + M H VGG L L ++ +
Sbjct: 71 QAIKHASHGILSNQEADKYGLSGEDTNQ--FNNMHSHSARIVGGALTLADLIMKGIYHNG 128
Query: 238 INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNE 297
++GGG HHA E + GFC Y D+++ K L Q K +IVD DAH G+G + F +
Sbjct: 129 CHLGGGLHHALEGRANGFCVYNDVAITAKYLNQ-KYGQRVLIVDTDAHHGDGTQWRFYTD 187
Query: 298 TRIF---IMETC---------ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERSL 342
I I ET T + ++ + L PYTED YLE +E L +
Sbjct: 188 EEIMCYSIHETGKFLFPGSGHYTERGEDQGYGYTVNLPLEPYTEDASYLECLELSLNAII 247
Query: 343 RSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE-RRVPIVMLTSGGY 400
+F PDII+ G D+ DPL + + + + L+ A I+M GGY
Sbjct: 248 EAFKPDIILSVHGVDIHFQDPLTHMNCTLDALYQIPYLINALAETYTDGKIIMFGGGGY 306
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA E + GFC Y D+++ K L Q K +IVD DAH
Sbjct: 130 HLGGGLHHALEGRANGFCVYNDVAITAKYLNQ-KYGQRVLIVDTDAHH 176
>gi|239637943|ref|ZP_04678904.1| acetoin utilization protein AcuC [Staphylococcus warneri L37603]
gi|239596506|gb|EEQ79042.1| acetoin utilization protein AcuC [Staphylococcus warneri L37603]
Length = 386
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 146/326 (44%), Gaps = 43/326 (13%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L ++A+F+T +NI+EP+ +++++ + H Y+
Sbjct: 18 YRFNNEHPFNQMRLKLTTELL--------LDAQFLTNENILEPRIATDDEIGLIHKYDYI 69
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + +E V R M H VGG L + G IN
Sbjct: 70 QAIKHASHGILSAEEAKKYGFNEDTVP---FRHMHRHCARIVGGALNLAD-KIMDGTYIN 125
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMN 296
+GGG HHA + GFC Y D+++ + L + MI+D DAH G+G + F
Sbjct: 126 GCHLGGGLHHALAGRANGFCIYNDVAITAQYLVHHYN-QRVMIIDTDAHHGDGTQWSFYT 184
Query: 297 ETRIF---IMETC---------ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
+ I ET T + ++ + L PYTED+ +LE ++ +E
Sbjct: 185 SNDVLTYSIHETGKFLFPGSGHYTERGEDIGYGYTVNVPLEPYTEDKSFLESFKSTVEPV 244
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV---FMKARERRVPIVMLTSG 398
+ +F PDII+ G D+ DPL + + + + ++ K E R I+M G
Sbjct: 245 IAAFKPDIILSVNGVDIHYRDPLTHMNCTLSSLYQLPYIIKDLAEKYTENR--IIMFGGG 302
Query: 399 GYLKQTARIIADSILNLADLGLISRP 424
GY R++ + +L L LI+ P
Sbjct: 303 GY--NLWRVVPRAWSHLY-LSLINEP 325
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y D+++ + L + MI+D DAH
Sbjct: 128 HLGGGLHHALAGRANGFCIYNDVAITAQYLVHHYN-QRVMIIDTDAHH 174
>gi|385784140|ref|YP_005760313.1| histone deacetylase family protein [Staphylococcus lugdunensis
N920143]
gi|418413816|ref|ZP_12987032.1| hypothetical protein HMPREF9308_00197 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|339894396|emb|CCB53674.1| histone deacetylase family protein [Staphylococcus lugdunensis
N920143]
gi|410877454|gb|EKS25346.1| hypothetical protein HMPREF9308_00197 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 385
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 128/299 (42%), Gaps = 33/299 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ + HPF+ + K L A ++ NI+EP + +L + H Y+
Sbjct: 19 YRFDNHHPFNQMRLKLTTELL--------QTAGYLNNSNIVEPPIATTNELTLVHQYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGW--S 237
+++K + + ++ + + M H VGG L L ++ +
Sbjct: 71 QAIKHASHGILSNQEADKYGLSGEDTNQ--FNNMHSHSARIVGGALTLADLIMKGIYHNG 128
Query: 238 INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNE 297
++GGG HHA E + GFC Y D+++ K L Q K +IVD DAH G+G + F +
Sbjct: 129 CHLGGGLHHALEGRANGFCVYNDVAITAKYLNQ-KYGQRVLIVDTDAHHGDGTQWRFYTD 187
Query: 298 TRIF---IMETC---------ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERSL 342
I I ET T + ++ + L PYTED YLE +E L +
Sbjct: 188 EEIMCYSIHETGKFLFPGSGHYTERGEDQGYGYTVNLPLEPYTEDASYLECLELSLNAII 247
Query: 343 RSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE-RRVPIVMLTSGGY 400
+F PDII+ G D+ DPL + + + + L+ A I+M GGY
Sbjct: 248 EAFKPDIILSVHGVDIHFQDPLTHMNCTLDALYQIPYLINALAETYTDGKIIMFGGGGY 306
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA E + GFC Y D+++ K L Q K +IVD DAH
Sbjct: 130 HLGGGLHHALEGRANGFCVYNDVAITAKYLNQ-KYGQRVLIVDTDAHH 176
>gi|384430669|ref|YP_005640029.1| histone deacetylase [Thermus thermophilus SG0.5JP17-16]
gi|333966137|gb|AEG32902.1| Histone deacetylase [Thermus thermophilus SG0.5JP17-16]
Length = 375
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 88/320 (27%), Positives = 141/320 (44%), Gaps = 45/320 (14%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
++YR EY ++ F + HPF + + + L+EA + + + P E S E
Sbjct: 2 VIYRDEYRLYNFGPD--HPFSPVRLE---------MLTSLLEALGVWRAPL-SPPEASRE 49
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYF-------VQKCYLRPMRYHVGGTL 225
++L H+E+ +K ++ A+ E+ P +P Y V R R VGGTL
Sbjct: 50 EVLSVHSERLVKRVE----AASRGELYP--DLPEYGLGTGDTPVFPGMDRAARILVGGTL 103
Query: 226 EAGFLALR-RGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDA 284
E L + +GGG HHA + GFC Y D+S+ ++ +++ VD+D
Sbjct: 104 EGARRILAGEKRVLQLGGGLHHAQYDRASGFCVYNDLSVAIR--HMTRAGLRVAYVDIDV 161
Query: 285 HQGNGYEKDFMNETRIFIMETC---------------ITSKAKEAIRCRIELAPYTEDQH 329
H G+G + E + + I A + + L P+TED+
Sbjct: 162 HHGDGVQWIHYEEGEVLTLSLHESGRYLFPGTGHVYEIGRGAGLGKKLNLPLEPFTEDES 221
Query: 330 YLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERR 389
YLE EA + +L++F PD++V AG D DPL L ++ + R L+ A
Sbjct: 222 YLEVFEALVPWALKAFRPDVLVVQAGADAHYLDPLADLLLTARAYERLFRLLLEYAEAYA 281
Query: 390 VPIVMLT-SGGY-LKQTARI 407
V+ T GGY L T R+
Sbjct: 282 GGRVLFTLGGGYSLDGTVRV 301
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 19 INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+ +GGG HHA + GFC Y D+S+ ++ +++ VD+D H
Sbjct: 117 LQLGGGLHHAQYDRASGFCVYNDLSVAIR--HMTRAGLRVAYVDIDVHH 163
>gi|320104431|ref|YP_004180022.1| histone deacetylase [Isosphaera pallida ATCC 43644]
gi|319751713|gb|ADV63473.1| Histone deacetylase [Isosphaera pallida ATCC 43644]
Length = 309
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 92/188 (48%), Gaps = 7/188 (3%)
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
R GGT+ A AL S+N+ GG HHA KG G+C + D ++ + L +
Sbjct: 98 RRSTGGTIAAARAALEDFASVNLAGGTHHAHVHKGAGYCVFNDAAVAARALLAEGRVERV 157
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSKAKEAIR-----CRIELAPYTEDQHYLE 332
+I+D D H G+G F ++ R+F I S +R + L D YL
Sbjct: 158 VILDCDVHHGDGTAAIFADDPRVFTY--SIHSAKNYPMRKPPSDLDVPLPDGIGDTDYLA 215
Query: 333 KIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPI 392
++E + ++L ++ +Y AG D D LG L ++ +G+ RRD +F + R R +P+
Sbjct: 216 RLEETVPQALDRAGANLAIYLAGADPYEGDRLGRLKLTKEGLRRRDAFIFAECRRRMLPV 275
Query: 393 VMLTSGGY 400
+ +GGY
Sbjct: 276 AVTMAGGY 283
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A AL S+N+ GG HHA KG G+C + D ++ + L + +I+D
Sbjct: 103 GTIAAARAALEDFASVNLAGGTHHAHVHKGAGYCVFNDAAVAARALLAEGRVERVVILDC 162
Query: 64 DAHQ 67
D H
Sbjct: 163 DVHH 166
>gi|55980444|ref|YP_143741.1| acetoin utilization protein AcuC [Thermus thermophilus HB8]
gi|55771857|dbj|BAD70298.1| acetoin utilization protein AcuC (putative T-histone deacetylase)
[Thermus thermophilus HB8]
Length = 374
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 141/315 (44%), Gaps = 32/315 (10%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
++YR EY ++ F + HPF + + + L++A + + + P E S E
Sbjct: 2 VIYREEYRLYNFGPD--HPFSPVRLE---------MLTSLLQALGVWRAPL-SPPEASRE 49
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLE-AGFLA 231
++L H+E+ +K ++ + ++ + + V R R VGGTLE A +
Sbjct: 50 EVLSVHSERLVKRVEAASRGELYPDLEHYLGTGDTPVFPGMDRAARILVGGTLEGARRIM 109
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
+ +GGG HHA + GFC Y D+S+ ++ + Q + A VD+D H G+G +
Sbjct: 110 AGEKRVLQLGGGLHHAQYDRASGFCVYNDLSVAIRHMTQV-GLRVAY-VDIDVHHGDGVQ 167
Query: 292 KDFMNETRIFIMETC---------------ITSKAKEAIRCRIELAPYTEDQHYLEKIEA 336
E + + I A + + L P+TED+ YLE EA
Sbjct: 168 WIHYEEGEVLTLSLHESGRYLFPGTGHVYEIGRGAGLGKKLNLPLEPFTEDESYLEVFEA 227
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
+ +L++F PD++V AG D DPL L ++ + R L+ A V+ T
Sbjct: 228 LVPWALKAFRPDVLVVQAGADAHYLDPLADLLLTARAYERLFRLLLEYAEAYAGGRVLFT 287
Query: 397 -SGGY-LKQTARIIA 409
GGY L T R+ A
Sbjct: 288 LGGGYSLDGTVRVWA 302
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 19 INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+ +GGG HHA + GFC Y D+S+ ++ + Q + A VD+D H
Sbjct: 116 LQLGGGLHHAQYDRASGFCVYNDLSVAIRHMTQV-GLRVAY-VDIDVHH 162
>gi|397636559|gb|EJK72326.1| hypothetical protein THAOC_06153 [Thalassiosira oceanica]
Length = 330
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 34/222 (15%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKL------------- 267
V GT+ LALR G + N+ GG HHA+ + G+ D++ V+L
Sbjct: 90 VAGTVLTAQLALRHGVASNVAGGTHHATRDRARGYTILNDLATAVRLMTWDEDDAARDGT 149
Query: 268 ----------LFQSKS-ISTAMIVDLDAHQGNGYEKDFMN------ETRIFIMETCITSK 310
L++ +S + ++VD D HQG+G F N R+F ++ +
Sbjct: 150 GPEDLELLRGLYRGESPVERVLVVDTDVHQGDGTAT-FHNGPGSPLAGRLFTLDLHASRN 208
Query: 311 ---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLL 367
KE + L T+D YL+ + GL+R++ PD+++YNAG DV D LG L
Sbjct: 209 YPARKEECTYSVGLPDGTDDDGYLDALAGGLDRAIDEVRPDLVLYNAGVDVHERDRLGRL 268
Query: 368 AISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIA 409
+++ GI RRD V R +P+ GGY + A
Sbjct: 269 SLTTDGIRRRDMHVVRTCRGAGLPVACTVGGGYSDDPGEVAA 310
>gi|218295240|ref|ZP_03496076.1| histone deacetylase superfamily [Thermus aquaticus Y51MC23]
gi|218244443|gb|EED10968.1| histone deacetylase superfamily [Thermus aquaticus Y51MC23]
Length = 375
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 144/323 (44%), Gaps = 41/323 (12%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
++YR EY ++ F + HPF + + + + L++A + ++ + P E + E
Sbjct: 2 VIYRDEYRLYNFGPQ--HPFSPVRLEMLVS---------LLQALGVWREPL-SPSEATRE 49
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPL----VAVPNYFVQKCYLRPMRYHVGGTLEAG 228
++L H+E+ +K ++ V+ V L + + V R R VGGTLE
Sbjct: 50 EILSVHSERLVKRVE---AVSRGERVPDLEHYGLGTGDTPVFPGMDRAARVLVGGTLEGA 106
Query: 229 ---FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAH 285
L RR + +GGG HHA + GFC Y D+S+ ++ L +++ +D+D H
Sbjct: 107 RRILLGERR--VLQLGGGLHHAQYDRASGFCVYNDLSVAIRYL--TRAGLKVAYLDIDVH 162
Query: 286 QGNGYEKDFMNETRIFIMETC---------------ITSKAKEAIRCRIELAPYTEDQHY 330
G+G + E + + + + + + L P+TED+ Y
Sbjct: 163 HGDGVQWIHYEEKEVLTLSLHESGRYLFPGTGHVHEMGRREGTGRKLNLPLEPFTEDESY 222
Query: 331 LEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRV 390
LE EA + +L++F PD++V AG D DPL L ++ + R L+ A
Sbjct: 223 LEVFEALVPWALKAFRPDVLVVQAGADAHFLDPLADLLLTTRAYERLFRLILEYAEAFTG 282
Query: 391 PIVMLTSGGYLKQTARIIADSIL 413
V+ T GG A + +IL
Sbjct: 283 GRVLFTLGGGYSLDAAVRVWAIL 305
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 35/145 (24%)
Query: 4 GTLEAG---FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMI 60
GTLE L RR + +GGG HHA + GFC Y D+S+ ++ L ++ +
Sbjct: 101 GTLEGARRILLGERR--VLQLGGGLHHAQYDRASGFCVYNDLSVAIRYLTRAGLKVAYLD 158
Query: 61 VD-------------------LDAHQFSDYYFPSA---HSIKRK----RKVEFLKERKAL 94
+D L H+ Y FP H + R+ RK+ E
Sbjct: 159 IDVHHGDGVQWIHYEEKEVLTLSLHESGRYLFPGTGHVHEMGRREGTGRKLNLPLE-PFT 217
Query: 95 EDEITSEPQESVVTRPWPI-VYRPE 118
EDE E E++V PW + +RP+
Sbjct: 218 EDESYLEVFEALV--PWALKAFRPD 240
>gi|418636659|ref|ZP_13199005.1| histone deacetylase family protein [Staphylococcus lugdunensis
VCU139]
gi|374840714|gb|EHS04199.1| histone deacetylase family protein [Staphylococcus lugdunensis
VCU139]
Length = 384
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 128/299 (42%), Gaps = 33/299 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ + HPF+ + K L A ++ NI+EP + +L + H Y+
Sbjct: 18 YRFDNHHPFNQMRLKLTTELL--------QTAGYLNNSNIVEPPIATTNELTLVHQYDYV 69
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGW--S 237
+++K + + ++ + + M H VGG L L ++ +
Sbjct: 70 QAIKHASHGILSNQEADKYGLSGEDTNQ--FNNMHSHSARIVGGALTLADLIMKGIYHNG 127
Query: 238 INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNE 297
++GGG HHA E + GFC Y D+++ K L Q K +IVD DAH G+G + F +
Sbjct: 128 CHLGGGLHHALEGRANGFCVYNDVAITAKYLNQ-KYGQRVLIVDTDAHHGDGTQWRFYTD 186
Query: 298 TRIF---IMETC---------ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERSL 342
I I ET T + ++ + L PYTED YLE +E L +
Sbjct: 187 EEIMCYSIHETGKFLFPGSGHYTERGEDQGYGYTVNLPLEPYTEDASYLECLELSLNAII 246
Query: 343 RSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE-RRVPIVMLTSGGY 400
+F PDII+ G D+ DPL + + + + L+ A I+M GGY
Sbjct: 247 EAFKPDIILSVHGVDIHFQDPLTHMNCTLDALYQIPYLINALAETYTDGRIIMFGGGGY 305
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA E + GFC Y D+++ K L Q K +IVD DAH
Sbjct: 129 HLGGGLHHALEGRANGFCVYNDVAITAKYLNQ-KYGQRVLIVDTDAHH 175
>gi|27366395|ref|NP_761923.1| Histone deacetylase/AcuC/AphA family protein [Vibrio vulnificus
CMCP6]
gi|27362596|gb|AAO11450.1| Histone deacetylase/AcuC/AphA family protein [Vibrio vulnificus
CMCP6]
Length = 312
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 130/292 (44%), Gaps = 14/292 (4%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y+ L + H + K+ H++ + ++ +L + +P+ +S
Sbjct: 5 PLIYHPIYSQ--LPLPEGHRYPIMKYHHLYQAVCRYQQQHLEWQQAFA---FYQPEALSI 59
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E + H ++Y+ L AA + P + +K R + G L A A
Sbjct: 60 EAIKQVHQQEYVDLLTTGLLPAAKMR---RIGFP--WSEKLIERTLTSTAGTVLTAE-KA 113
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L+ G +I++ GG+HHA G GFC + D+ + + S+ +I+D D H G+G
Sbjct: 114 LQHGVAIHLSGGYHHAHFDYGSGFCLFNDLVMAAHKALEHGSVDKVLIIDSDVHHGDGTA 173
Query: 292 KDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
I + C + K I L D+ +L + + ++R PD
Sbjct: 174 TLCQRRDDIVTLSFHCDKNFPARKPDSDLDIGLPRECGDEAFLAAFKEVVPMAIRLHQPD 233
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
+I+Y+AG D+ D LG L +S + +RD +F +A+ +P+ + GGY
Sbjct: 234 LIIYDAGVDIHHEDELGYLNVSTDALYQRDAFLFGQAKANAIPVAAVVGGGY 285
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ AL+ G +I++ GG+HHA G GFC + D+ + + S+ +I+D
Sbjct: 105 GTVLTAEKALQHGVAIHLSGGYHHAHFDYGSGFCLFNDLVMAAHKALEHGSVDKVLIIDS 164
Query: 64 DAHQ 67
D H
Sbjct: 165 DVHH 168
>gi|381190206|ref|ZP_09897729.1| T-histone deacetylase [Thermus sp. RL]
gi|380451799|gb|EIA39400.1| T-histone deacetylase [Thermus sp. RL]
Length = 375
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 140/318 (44%), Gaps = 41/318 (12%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
++YR EY ++ F + HPF + + + L++A Q N + P E + E
Sbjct: 2 VIYREEYRLYNFGPD--HPFSPVRLE---------MLTSLLQALEAWQ-NPLAPPEATRE 49
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCP-----LVAVPNYFVQKCYLRPMRYHVGGTLEA 227
++L H+E+ +K ++ A+ E+ P + + V R R VGGTLE
Sbjct: 50 EVLSVHSERLVKRVE----AASRGELFPDLEHYGLGTGDTPVFPGMDRAARILVGGTLEG 105
Query: 228 GFLALR-RGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 286
L + +GGG HHA + GFC Y D+S+ ++ +++ VD+D H
Sbjct: 106 ARRILAGEKRVLQLGGGLHHAQYDRASGFCVYNDLSVAIR--HMTRAGLRVAYVDIDVHH 163
Query: 287 GNGYEKDFMNETRIFIMETC---------------ITSKAKEAIRCRIELAPYTEDQHYL 331
G+G + E + + I A + + L P+TED+ YL
Sbjct: 164 GDGVQWIHYEEGEVLTLSLHESGRYLFPGTGHVYEIGRGAGLGKKLNLPLEPFTEDESYL 223
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
E EA + +L++F PD++V AG D DPL L ++ + R L+ A
Sbjct: 224 EVFEALVPWALKAFRPDVLVVQAGADAHYLDPLADLLLTARAYERLFRLLLEYAEAYAGG 283
Query: 392 IVMLT-SGGY-LKQTARI 407
V+ T GGY L T R+
Sbjct: 284 RVLFTLGGGYSLDGTVRV 301
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 19 INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+ +GGG HHA + GFC Y D+S+ ++ +++ VD+D H
Sbjct: 117 LQLGGGLHHAQYDRASGFCVYNDLSVAIR--HMTRAGLRVAYVDIDVHH 163
>gi|375105538|ref|ZP_09751799.1| deacetylase, histone deacetylase/acetoin utilization protein
[Burkholderiales bacterium JOSHI_001]
gi|374666269|gb|EHR71054.1| deacetylase, histone deacetylase/acetoin utilization protein
[Burkholderiales bacterium JOSHI_001]
Length = 314
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 116/251 (46%), Gaps = 19/251 (7%)
Query: 162 NIIEPQEVSEEQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH 220
I+E +E +L +AH Y+ L+ + + AA E+ P + ++ R +R
Sbjct: 39 RILEAPAATEGELALAHDPGYIDGVLRGTLSTAAQREI----GFP--WSERMAQRAVRS- 91
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLL-----FQSKSIS 275
VG T+ A AL G + GG HHA KG G+C + D+++ +L+ + K
Sbjct: 92 VGATIAAARAALAEGVAAQTAGGTHHAYSFKGSGYCVFNDVAVAARLMQAETHRRHKRGL 151
Query: 276 TAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLE 332
+++DLD HQGNG F ++ +F KEA +EL D+ YL
Sbjct: 152 RVLVIDLDVHQGNGTAAIFRDDESVFTFSMHGARNFPFRKEASDLDVELPDGCSDEPYLA 211
Query: 333 KIE---AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERR 389
++ A + L P + Y AG D D LG L +S G+ RDE V R RR
Sbjct: 212 ALDHALASVAARLADRPPGLAFYLAGADPHEGDRLGRLKLSSAGLAARDERVLAWLRARR 271
Query: 390 VPIVMLTSGGY 400
+P+ + +GGY
Sbjct: 272 IPVALSMAGGY 282
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 16 GWSINIGGGFHHASETKGGGFCAYADISLLVKLL-----FQSKSISTAMIVDLDAHQ--- 67
G + GG HHA KG G+C + D+++ +L+ + K +++DLD HQ
Sbjct: 106 GVAAQTAGGTHHAYSFKGSGYCVFNDVAVAARLMQAETHRRHKRGLRVLVIDLDVHQGNG 165
Query: 68 ----FSDYYFPSAHSIKRKRKVEFLKERKALEDEI 98
F D S+ R F KE L+ E+
Sbjct: 166 TAAIFRDDESVFTFSMHGARNFPFRKEASDLDVEL 200
>gi|242374025|ref|ZP_04819599.1| acetoin utilization protein [Staphylococcus epidermidis M23864:W1]
gi|242348276|gb|EES39878.1| acetoin utilization protein [Staphylococcus epidermidis M23864:W1]
Length = 391
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 137/302 (45%), Gaps = 39/302 (12%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L EAKF+ ++II+P+ ++++L + H Y+
Sbjct: 19 YRFNNEHPFNQMRLKLTTELL--------KEAKFLKPEHIIKPRIATDDELALIHKYDYI 70
Query: 184 KSLKW-SFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLE-AGFL---ALRR 234
++++ S + + E VQ R M H VGG L A L +L
Sbjct: 71 QAIRHASHGILSEEEAKKYGLNSEDTVQ---FRHMHRHSARIVGGALNLADRLMDGSLDN 127
Query: 235 GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF 294
G ++GGG HHA + GFC Y D+++ K L + + MI+D DAH G+G + F
Sbjct: 128 G--CHLGGGLHHAQSGRANGFCIYNDVAITAKYLVERYN-QRVMIIDTDAHHGDGTQWSF 184
Query: 295 MNETRIF---IMETC---------ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLE 339
+ +I I ET T + ++ + L PYTED YL+ + +E
Sbjct: 185 YTDNQIMTYSIHETGKFLFPGSGHYTERGEDLGYGYTVNVPLEPYTEDDSYLDVFKETVE 244
Query: 340 RSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVF-MKARERRVPIVMLTSG 398
+ +F PDII+ G D+ DPL ++ + + ++ + AR ++M G
Sbjct: 245 PVIAAFKPDIILSVHGVDIHYRDPLTHISCTLSTLYTIPYIIQDLAARYCHHKVIMFGGG 304
Query: 399 GY 400
GY
Sbjct: 305 GY 306
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y D+++ K L + + MI+D DAH
Sbjct: 130 HLGGGLHHAQSGRANGFCIYNDVAITAKYLVERYN-QRVMIIDTDAHH 176
>gi|149188179|ref|ZP_01866474.1| Histone deacetylase/AcuC/AphA family protein [Vibrio shilonii AK1]
gi|148838167|gb|EDL55109.1| Histone deacetylase/AcuC/AphA family protein [Vibrio shilonii AK1]
Length = 309
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 137/301 (45%), Gaps = 19/301 (6%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y+ L + H + K++ ++ + + L E+ F+ I P ++
Sbjct: 7 PLIYHPIYS--DLPLPEGHRYPINKYRLLYEEVERKYLR-LAESPFV----IKTPSALTV 59
Query: 172 EQLLIAHTEKYLKSL-KWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
EQ+ H + Y++ L S A I + P + ++ R + GGT A
Sbjct: 60 EQVQQVHCKDYVEDLVTGSLPAARIRRI----GFP--WTEQLIQRTLT-SAGGTCLAAQQ 112
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
A+ G +I++ GG+HHA G GFC + D+ + + + + +IVD D H G+G
Sbjct: 113 AMEYGLAIHLSGGYHHAHYDFGSGFCLFNDLIIAAQNAIEHGA-EKVLIVDSDVHHGDGS 171
Query: 291 EKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+I + K + L+ D+ +L + +E ++R P
Sbjct: 172 ATLAAGTDQIVTLSLHCEKNFPARKPLSDMDVPLSRGASDKEFLASFKQVVELAIRLHQP 231
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 407
D+I+Y+AG D+ +D LG L ++ G+ +RD + R + +P+ + GGY + + +
Sbjct: 232 DLIIYDAGVDIHEDDELGYLQVTLNGVCQRDLWMLDYCRNKGIPVACVVGGGYRTEHSDL 291
Query: 408 I 408
I
Sbjct: 292 I 292
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A A+ G +I++ GG+HHA G GFC + D+ + + + + +IVD
Sbjct: 105 GTCLAAQQAMEYGLAIHLSGGYHHAHYDFGSGFCLFNDLIIAAQNAIEHGA-EKVLIVDS 163
Query: 64 DAHQ 67
D H
Sbjct: 164 DVHH 167
>gi|320156918|ref|YP_004189297.1| histone deacetylase/AcuC/AphA family protein [Vibrio vulnificus
MO6-24/O]
gi|319932230|gb|ADV87094.1| histone deacetylase/AcuC/AphA family protein [Vibrio vulnificus
MO6-24/O]
Length = 312
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 130/292 (44%), Gaps = 14/292 (4%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y+ L + H + K+ H++ + ++ +L + +P+ +S
Sbjct: 5 PLIYHPIYSQ--LPLPEGHRYPIMKYHHLYQAVCRYQQQHLEWQQAFA---FYQPEALSI 59
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E + H ++Y+ L AA + P + +K R + G L A A
Sbjct: 60 EAIKQVHQQEYVDLLTTGLLPAAKMR---RIGFP--WSEKLIERTLTSTAGTVLTAE-KA 113
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L+ G +I++ GG+HHA G GFC + D+ + + S+ +I+D D H G+G
Sbjct: 114 LQHGVAIHLSGGYHHAHFDYGSGFCLFNDLVMAAHKALEHASVDKVLIIDSDVHHGDGTA 173
Query: 292 KDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
I + C + K I L D+ +L + + ++R PD
Sbjct: 174 TLCQRRDDIVTLSFHCDKNFPARKPDSDLDIGLPRECGDEAFLAAFKEVVPMAIRLHQPD 233
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
+I+Y+AG D+ D LG L +S + +RD +F +A+ +P+ + GGY
Sbjct: 234 LIIYDAGVDIHHEDELGYLNVSTVALYQRDAFLFGQAKANAIPVAAVVGGGY 285
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ AL+ G +I++ GG+HHA G GFC + D+ + + S+ +I+D
Sbjct: 105 GTVLTAEKALQHGVAIHLSGGYHHAHFDYGSGFCLFNDLVMAAHKALEHASVDKVLIIDS 164
Query: 64 DAHQ 67
D H
Sbjct: 165 DVHH 168
>gi|428176853|gb|EKX45735.1| hypothetical protein GUITHDRAFT_70985 [Guillardia theta CCMP2712]
Length = 342
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 86/190 (45%), Gaps = 3/190 (1%)
Query: 214 LRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKS 273
+R V GT A LAL R + N GG HH+ G GF + D+++ L +
Sbjct: 116 VRRTLLEVQGTTIAARLALERRLACNAAGGTHHSFADYGSGFTIFNDLAVTAAWLRDERL 175
Query: 274 ISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHY 330
+I+DLD HQG+G + + S K+ + L D+ Y
Sbjct: 176 AKRVLILDLDVHQGDGTAAIHAGNPDVMTVSVHCESNFPFRKQQSDLDVALEDEVGDRDY 235
Query: 331 LEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRV 390
L ++ L L F PDI++Y+AG DV +D LG L IS QG+ RD V ++
Sbjct: 236 LLRLSQFLPSLLADFKPDIVLYDAGVDVHADDELGKLHISDQGLFDRDVYVLRTCLAMKI 295
Query: 391 PIVMLTSGGY 400
P+ + GGY
Sbjct: 296 PVATVIGGGY 305
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A LAL R + N GG HH+ G GF + D+++ L + +I+DL
Sbjct: 125 GTTIAARLALERRLACNAAGGTHHSFADYGSGFTIFNDLAVTAAWLRDERLAKRVLILDL 184
Query: 64 DAHQ 67
D HQ
Sbjct: 185 DVHQ 188
>gi|423687680|ref|ZP_17662483.1| deacetylase [Vibrio fischeri SR5]
gi|371493463|gb|EHN69066.1| deacetylase [Vibrio fischeri SR5]
Length = 298
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 127/293 (43%), Gaps = 23/293 (7%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
++Y P Y+ L H + +K++ ++ + H + + EP +S E
Sbjct: 4 LIYHPIYSQ--LALPDGHRYPIQKYQRLYQAIQSHYSDEVYRC--------FEPIPLSIE 53
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAGFL 230
+ H E Y+ +L AA + P + + L GT
Sbjct: 54 AIKQVHEENYVNALVTGTLPAAKMR---RIGFPWSESLIGRTLLS-----ASGTCLTVDK 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL G +I++ GG+HHA G GFC D+ + SI +I+D D H G+G
Sbjct: 106 ALENGSAIHLSGGYHHAHYDFGSGFCLVNDLVIAAHHGLSKDSIDKVLIIDSDVHHGDGT 165
Query: 291 EKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ I + C + K + L T+D +LE + +E ++ P
Sbjct: 166 ATLCADRGDIITLSFHCDKNFPARKPMSDYDVPLPVGTQDNEFLEAFKQIVEMAINHHQP 225
Query: 348 DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
D+I+Y+AG D+ ++D LG L++S +G+ +RD + A ++ +PI + GGY
Sbjct: 226 DLIIYDAGVDIHIDDELGYLSVSTEGLYQRDRFMKSIATQKGIPIACVVGGGY 278
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
AL G +I++ GG+HHA G GFC D+ + SI +I+D D H
Sbjct: 106 ALENGSAIHLSGGYHHAHYDFGSGFCLVNDLVIAAHHGLSKDSIDKVLIIDSDVHH 161
>gi|46198412|ref|YP_004079.1| T-histone deacetylase [Thermus thermophilus HB27]
gi|46196034|gb|AAS80452.1| putative T-histone deacetylase [Thermus thermophilus HB27]
Length = 375
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 143/321 (44%), Gaps = 43/321 (13%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
++YR EY ++ F + HPF + + + L++A + + + P E S E
Sbjct: 2 VIYREEYRLYNFGPD--HPFSPVRLE---------MLTSLLQALGVWRAPL-SPPEASRE 49
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCP-----LVAVPNYFVQKCYLRPMRYHVGGTLEA 227
++L H+E+ +K ++ A+ E+ P + + V R R VGGTLE
Sbjct: 50 EVLSVHSERLVKRVE----AASRGELYPDLEHYGLGTGDTPVFPGMDRAARILVGGTLEG 105
Query: 228 G--FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAH 285
LA + + +GGG HHA + GFC Y D+S+ ++ +++ VD+D H
Sbjct: 106 ARRILAGEKR-VLQLGGGLHHAQYDRASGFCVYNDLSVAIR--HMTRAGLRVAYVDIDVH 162
Query: 286 QGNGYEKDFMNETRIFIMETC---------------ITSKAKEAIRCRIELAPYTEDQHY 330
G+G + E + + I A + + L P+TED+ Y
Sbjct: 163 HGDGVQWIHYEEGEVLTLSLHESGRYLFPGTGHVYEIGRGAGLGKKLNLPLEPFTEDESY 222
Query: 331 LEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRV 390
LE EA + +L++F PD++V AG D DPL L ++ + R L+ A
Sbjct: 223 LEVFEALVPWALKAFRPDVLVVQAGADAHYLDPLADLLLTTRAYERLFRLLLEYAEAYAG 282
Query: 391 PIVMLT-SGGY-LKQTARIIA 409
V+ T GGY L T R+ A
Sbjct: 283 GRVLFTLGGGYSLDGTVRVWA 303
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 19 INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+ +GGG HHA + GFC Y D+S+ ++ +++ VD+D H
Sbjct: 117 LQLGGGLHHAQYDRASGFCVYNDLSVAIR--HMTRAGLRVAYVDIDVHH 163
>gi|224012517|ref|XP_002294911.1| histone deacetylase Rpd3 HDA2 HDA1 HDAC HD2 [Thalassiosira
pseudonana CCMP1335]
gi|220969350|gb|EED87691.1| histone deacetylase Rpd3 HDA2 HDA1 HDAC HD2 [Thalassiosira
pseudonana CCMP1335]
Length = 348
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 110/231 (47%), Gaps = 24/231 (10%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF--QSKSISTAM 278
V GT+ LA++ G + ++ GG HHA +G GF D++++ +L+ + + +
Sbjct: 116 VAGTVLTAQLAMKYGLACHLAGGTHHAESCRGKGFTILNDLAVVARLMTWNEGDEVERVL 175
Query: 279 IVDLDAHQGNGYEKDFMNET-----------------RIFIMETCITSK---AKEAIRCR 318
+VD D HQG+G ++T +++ ++ S KE
Sbjct: 176 VVDCDVHQGDGTATFHTDQTSPSNNKDKTFPATNLCNKLYTLDLHAESNYPHPKEKCTYD 235
Query: 319 IELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRD 378
+ L +D+ YL + L+R+L P +++YNAG DV +D LG L++S +G+ +RD
Sbjct: 236 VPLPDDCDDELYLSSLGDALDRALEEVNPQLVLYNAGVDVYHSDKLGRLSLSWEGMKQRD 295
Query: 379 ELVFMKARERRVPIVMLTSGGYLKQTARI-IADSILNLADLGLISRPYNIW 428
V + +P+ + GGY + I S+++ L+ R Y +W
Sbjct: 296 IHVVRRCLIDNIPVACVVGGGYSTDVRELGIRHSLISRV-CSLMWREYGLW 345
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF--QSKSISTAMIV 61
GT+ LA++ G + ++ GG HHA +G GF D++++ +L+ + + ++V
Sbjct: 118 GTVLTAQLAMKYGLACHLAGGTHHAESCRGKGFTILNDLAVVARLMTWNEGDEVERVLVV 177
Query: 62 DLDAHQ 67
D D HQ
Sbjct: 178 DCDVHQ 183
>gi|412985199|emb|CCO20224.1| histone deacetylase superfamily protein [Bathycoccus prasinos]
Length = 322
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 91/201 (45%), Gaps = 14/201 (6%)
Query: 221 VGGTLEAGFLALRRG--WSINIGGGFHHASETKGGGFCAYADISLLVKL-------LFQS 271
GGT++ L G W+ + GG HHA G GFC + DI+ V++ LF+
Sbjct: 94 TGGTIKMTRDVLEHGFMWAGQLAGGTHHAFAGHGEGFCVFNDIACAVRVAQRDYEELFEG 153
Query: 272 KSISTAMIVDLDAHQGNGYEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTED 327
+ +IVDLD HQGNG K F N+ I + K + I L ED
Sbjct: 154 ED-RNVLIVDLDVHQGNGTAKIFENDKNIITYSIHGDRNYPWKTRMLSDYDIALPDDCED 212
Query: 328 QHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE 387
+ YL +E L + P ++ + AG D L D G L+++ +G+ RR+ LV E
Sbjct: 213 EEYLNALETSLPKVFEKHKPFLVYFQAGVDALKADSFGRLSMTREGLRRRNNLVLALCVE 272
Query: 388 RRVPIVMLTSGGYLKQTARII 408
+V GGY K R I
Sbjct: 273 HDCKLVTTMGGGYAKPIERSI 293
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
Query: 1 MEYGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKL-------LFQSK 53
M LE GF+ W+ + GG HHA G GFC + DI+ V++ LF+ +
Sbjct: 100 MTRDVLEHGFM-----WAGQLAGGTHHAFAGHGEGFCVFNDIACAVRVAQRDYEELFEGE 154
Query: 54 SISTAMIVDLDAHQ 67
+IVDLD HQ
Sbjct: 155 D-RNVLIVDLDVHQ 167
>gi|385774025|ref|YP_005646592.1| histone deacetylase superfamily protein [Sulfolobus islandicus
HVE10/4]
gi|323478140|gb|ADX83378.1| histone deacetylase superfamily [Sulfolobus islandicus HVE10/4]
Length = 351
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 136/305 (44%), Gaps = 37/305 (12%)
Query: 139 HIFNYLWKHIFNYLVEAK----FITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAA 194
H F L + + L+E + FIT +IEP+ +SEE L + H+++Y++ +K+
Sbjct: 21 HPFKSLRESMTKRLLEERSAFHFIT---LIEPKPISEEVLQLVHSKEYIEFVKYK----- 72
Query: 195 ISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGW----SINIGGGFHHASET 250
E + + K + G+++A L L +G INIGGGFHHA
Sbjct: 73 SKEGQGYLDDGDTPAFKGIYEAALIRISGSVKA--LELIKGGEFNHGINIGGGFHHAKRN 130
Query: 251 KGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIME------ 304
+ GFC + D++L+ KL S S IVD+D H +G ++ +++ ++ +
Sbjct: 131 RAAGFCVFNDVALIAKL--GENSFSKIAIVDIDGHHADGTQELLIDDDKVLKISLHMFHP 188
Query: 305 ---------TCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAG 355
I E I L P T D YL + + + + P++I+ G
Sbjct: 189 NFFPGSGDVNEIGVGKGEGYTINIPLPPGTGDDGYLLAFDEIVIPVIERYKPELIILITG 248
Query: 356 TDVLLNDPLGLLAISPQGIIRRDELVFMKARE-RRVPIVMLTSGGY-LKQTARIIADSIL 413
D NDPL L +S G + V A + V ++ML GGY TARI SI
Sbjct: 249 GDSYFNDPLVELKLSTHGYLDVVTKVHHLAHKYSSVRLIMLGGGGYNYDATARIWTISIA 308
Query: 414 NLADL 418
+A +
Sbjct: 309 EIAGI 313
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
INIGGGFHHA + GFC + D++L+ KL S S IVD+D H
Sbjct: 117 GINIGGGFHHAKRNRAAGFCVFNDVALIAKL--GENSFSKIAIVDIDGHH 164
>gi|37679340|ref|NP_933949.1| histone deacetylase/AcuC/AphA family protein [Vibrio vulnificus
YJ016]
gi|37198083|dbj|BAC93920.1| histone deacetylase/AcuC/AphA family protein [Vibrio vulnificus
YJ016]
Length = 312
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 130/292 (44%), Gaps = 14/292 (4%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y+ L + H + K+ H++ + ++ +L + +P+ +S
Sbjct: 5 PLIYHPIYSR--LPLPEGHRYPIMKYHHLYQAVCRYQQQHLEWQQAFA---FYQPEALSI 59
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E + H ++Y+ L AA + P + ++ R + G L A A
Sbjct: 60 EAIKQVHQQEYVDLLTTGLLPAAKMR---RIGFP--WSEQLIERTLTSTAGTVLTAE-KA 113
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L+ G +I++ GG+HHA G GFC + D+ + + S+ +I+D D H G+G
Sbjct: 114 LQHGVAIHLSGGYHHAHFDYGSGFCLFNDLVMAAHKALEHASVDKVLIIDSDVHHGDGTA 173
Query: 292 KDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
I + C + K I L D+ +L + + ++R PD
Sbjct: 174 TLCQRRDDIVTLSFHCDKNFPARKPDSDLDIGLPRECGDEAFLAAFKEVVPMAIRLHQPD 233
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400
+I+Y+AG D+ D LG L +S + +RD +F +A+ +P+ + GGY
Sbjct: 234 LIIYDAGVDIHHEDELGYLNVSTDALYQRDAFLFGQAKASAIPVAAVVGGGY 285
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ AL+ G +I++ GG+HHA G GFC + D+ + + S+ +I+D
Sbjct: 105 GTVLTAEKALQHGVAIHLSGGYHHAHFDYGSGFCLFNDLVMAAHKALEHASVDKVLIIDS 164
Query: 64 DAHQ 67
D H
Sbjct: 165 DVHH 168
>gi|30025976|gb|AAP04525.1| putative T-histone deacetylase [Thermus caldophilus]
Length = 375
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 142/320 (44%), Gaps = 41/320 (12%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
++YR EY ++ F + HPF + + + L++A + + + P E S E
Sbjct: 2 VIYREEYRLYNFGPD--HPFSPVRLE---------MLTSLLQALGVWRAPL-SPPEASRE 49
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCP-----LVAVPNYFVQKCYLRPMRYHVGGTLE- 226
++L H+E+ +K ++ A+ E+ P + + V R R VGGTLE
Sbjct: 50 EVLSVHSERLVKRVE----AASRGELYPDLEHYGLGTGDTPVFPGMDRAARILVGGTLEG 105
Query: 227 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 286
A + + +GGG HHA + GFC Y D+S+ ++ +++ VD+D H
Sbjct: 106 ARRIMAGEKRVLQLGGGLHHAQYDRASGFCVYNDLSVAIR--HMTRAGLRVAYVDIDVHH 163
Query: 287 GNGYEKDFMNETRIFIMETC---------------ITSKAKEAIRCRIELAPYTEDQHYL 331
G+G + E + + I A + + L P+TED+ YL
Sbjct: 164 GDGVQWIHYEEGEVLTLSLHESGRYLFPGTGHVYEIGRGAGLGKKLNLPLEPFTEDESYL 223
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
E EA + +L++F PD++V AG D DPL L ++ + R L+ A
Sbjct: 224 EVFEALVPWALKAFRPDVLVVQAGADAHYLDPLADLLLTARAYERLFRLLLEYAEAYAGG 283
Query: 392 IVMLT-SGGY-LKQTARIIA 409
V+ T GGY L T R+ A
Sbjct: 284 RVLFTLGGGYSLDGTVRVWA 303
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 19 INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+ +GGG HHA + GFC Y D+S+ ++ +++ VD+D H
Sbjct: 117 LQLGGGLHHAQYDRASGFCVYNDLSVAIR--HMTRAGLRVAYVDIDVHH 163
>gi|219113079|ref|XP_002186123.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582973|gb|ACI65593.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 324
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 96/189 (50%), Gaps = 9/189 (4%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSK-SISTAMI 279
V GT+ LA R G + ++ GG HHA T G G+ + D+++ ++ ++ S+ ++
Sbjct: 113 VAGTVLTSQLACRYGIAAHVAGGTHHAHVTGGAGYTIFNDLAVATHVVTATEPSVERVLV 172
Query: 280 VDLDAHQGNGYEK-----DFMNETRIFIMETCITS---KAKEAIRCRIELAPYTEDQHYL 331
+D D HQG+G + D ++++ + S + K + L ED Y+
Sbjct: 173 IDCDVHQGDGTARFSAAPDGPLHSKLYTLSLHCASNYPRLKAHSTWDVGLPDRMEDDEYM 232
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
+ + ++ +L + PD+++Y+AG DV D LG L ++ GI RRD V + R+P
Sbjct: 233 DALVRAVDVALAAAQPDLVLYDAGVDVYRKDKLGRLHLTLDGIRRRDRWVLDRCVSARIP 292
Query: 392 IVMLTSGGY 400
+ + GGY
Sbjct: 293 VAAVVGGGY 301
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSK-SISTAMIVD 62
GT+ LA R G + ++ GG HHA T G G+ + D+++ ++ ++ S+ +++D
Sbjct: 115 GTVLTSQLACRYGIAAHVAGGTHHAHVTGGAGYTIFNDLAVATHVVTATEPSVERVLVID 174
Query: 63 LDAHQ 67
D HQ
Sbjct: 175 CDVHQ 179
>gi|449018659|dbj|BAM82061.1| unknown deacetylase [Cyanidioschyzon merolae strain 10D]
Length = 369
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 92/190 (48%), Gaps = 13/190 (6%)
Query: 221 VGGTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTA 277
VGGT+ + R + I GG HHA G GFC + DI++ ++ + +
Sbjct: 141 VGGTVACMRDVVEGRSRCAAQIAGGTHHAFPDHGEGFCVFNDIAIAARVALRDYAQVRRI 200
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETCITSK------AKEAIRCRIELAPYTEDQHYL 331
+++DLD HQGNG F ++R+F TC K+ IE T+D YL
Sbjct: 201 LVLDLDVHQGNGVAAIFQGDSRVF---TCSFHGHGNYPFRKQKSDLDIEFEDNTDDTDYL 257
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVF-MKARERRV 390
+ +E L R + PD++ Y AG D L D LG LA++ G+ R+++V +E
Sbjct: 258 QILEVWLPRIMAKHDPDLVFYQAGVDALAEDKLGRLALTRAGLRLRNQIVLDYILQESEA 317
Query: 391 PIVMLTSGGY 400
IV+ GGY
Sbjct: 318 GIVICMGGGY 327
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 14 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQ 67
R + I GG HHA G GFC + DI++ ++ + + +++DLD HQ
Sbjct: 155 RSRCAAQIAGGTHHAFPDHGEGFCVFNDIAIAARVALRDYAQVRRILVLDLDVHQ 209
>gi|153006297|ref|YP_001380622.1| histone deacetylase superfamily protein [Anaeromyxobacter sp.
Fw109-5]
gi|152029870|gb|ABS27638.1| histone deacetylase superfamily [Anaeromyxobacter sp. Fw109-5]
Length = 589
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 121/267 (45%), Gaps = 11/267 (4%)
Query: 151 YLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQ 210
+L E + I P+ ++ + L HT + L+SL NVA I V P VP V
Sbjct: 52 WLRECGAVPTRAIHSPRRIAYDDLARVHTPELLESLGRPENVAHIFAVDP-SDVPVDEVM 110
Query: 211 KCYLRPMRYHVGGTLEAGFLALR-RGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF 269
+R G TL A LR + ++N+ GGFHHAS GGFC D+++ + +
Sbjct: 111 TT----IRLACGATLSATRETLRTKQPALNLLGGFHHASPGAAGGFCPVNDVAVALAAVR 166
Query: 270 QSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCRIELAPYTEDQH 329
+++DLDAH +G + + +I + A L T D
Sbjct: 167 AEGFTDRVVVLDLDAHPPDGIAACLAGDAKTWIGSLSGSDWGPLAGVDETVLPEGTGDAE 226
Query: 330 YLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERR 389
YL+ + A L R R P + AG DVL D G L ++ +G RD LV A
Sbjct: 227 YLDALAALLGRMPR---PQLAFVLAGGDVLAGDRFGKLGLTLEGARERDLLV--AAELEG 281
Query: 390 VPIVMLTSGGYLKQTARIIADSILNLA 416
VP V L++GGY + R++A + + LA
Sbjct: 282 VPQVWLSAGGYSNRAWRVLAGTGMALA 308
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAH 66
++N+ GGFHHAS GGFC D+++ + + +++DLDAH
Sbjct: 134 ALNLLGGFHHASPGAAGGFCPVNDVAVALAAVRAEGFTDRVVVLDLDAH 182
>gi|328950005|ref|YP_004367340.1| histone deacetylase [Marinithermus hydrothermalis DSM 14884]
gi|328450329|gb|AEB11230.1| Histone deacetylase [Marinithermus hydrothermalis DSM 14884]
Length = 377
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 138/318 (43%), Gaps = 34/318 (10%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P++Y P Y + F + HPF + + + + L H Y + P + +
Sbjct: 3 PVIYHPAYLSYNFGPQ--HPFSPVRLEMLLDLL--HALGY--------PPPLHTPPQATR 50
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPL-VAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
++L H E+++ ++ + A +++ + + V R+ VGGTLE L
Sbjct: 51 AEVLRVHAERFVTRVEAAARGAPPADLHHYGLGTTDTPVFPEMDAAARWIVGGTLEGARL 110
Query: 231 --ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
A R + +GGG HHA K GFC Y D+++ ++ L + + A I D+D H G+
Sbjct: 111 IAAGRTQRVLQLGGGLHHAQYDKASGFCVYNDLAVAIRYL-TDQGLRVAYI-DIDVHHGD 168
Query: 289 GYEKDFMNETRIFIMETCITSK---------------AKEAIRCRIELAPYTEDQHYLEK 333
G + F ++ + + + + A ++ + L P+T+D YLE
Sbjct: 169 GVQWIFYDDPNVLTLSLHESGRYLFPGTGTVLELGRGAGAGLKLNLPLEPFTQDASYLEV 228
Query: 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIV 393
E +L +F PD++V G D DPL L ++ Q + + V AR
Sbjct: 229 FERVAPAALEAFRPDVLVVQCGADAHYMDPLADLLLTTQAYEQLFQRVLDLARAHTGGRA 288
Query: 394 MLT-SGGY-LKQTARIIA 409
+ T GGY L T R+ A
Sbjct: 289 LFTLGGGYALDATVRVWA 306
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 4 GTLEAGFL--ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTLE L A R + +GGG HHA K GFC Y D+++ ++ L + + A I
Sbjct: 103 GTLEGARLIAAGRTQRVLQLGGGLHHAQYDKASGFCVYNDLAVAIRYL-TDQGLRVAYI- 160
Query: 62 DLDAHQ 67
D+D H
Sbjct: 161 DIDVHH 166
>gi|334134833|ref|ZP_08508335.1| histone deacetylase family [Paenibacillus sp. HGF7]
gi|333607677|gb|EGL18989.1| histone deacetylase family [Paenibacillus sp. HGF7]
Length = 392
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 131/288 (45%), Gaps = 47/288 (16%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
+K + HPF+ K+ + L K A + I+ P+ ++++LL H Y+
Sbjct: 16 YKFNEEHPFNPKRLLLTIDLLRK--------AGALNDSEIVTPRVATDDELLRVHQPAYI 67
Query: 184 KSLKWSFNVAAISEVCPLVAVPN-------------YFVQKCYLRPMRYHVGGTLEAG-- 228
++K A+SE+ P + N YF + M VGG++ A
Sbjct: 68 DAVK------ALSELSPSLEWVNSAAKYGLDTEDTPYFAWMHDVTSMV--VGGSITAADT 119
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
++ R + ++GGG HHA ++KG GFC Y D S + L + + + + +D D H G+
Sbjct: 120 VMSGRAKRAFHLGGGLHHALQSKGAGFCVYNDASAAIAHLTEHYN-AKVLYIDTDVHHGD 178
Query: 289 GYEKDFMNETRIF---IMETC---------ITSKAK-EAI-RC-RIELAPYTEDQHYLEK 333
G + F ++ R+ I ET +T + + EA C + + PYTED +LE
Sbjct: 179 GVQWSFYSDPRVCTFSIHETGKYLFPGTGDVTERGEGEAFGTCVNVPVEPYTEDDSWLES 238
Query: 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV 381
EA L + F PDIIV G D DPL + S + R EL+
Sbjct: 239 FEAVLVPLIERFKPDIIVSQHGCDAHALDPLAHVHCSMRIYKRMPELI 286
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+ ++GGG HHA ++KG GFC Y D S + L + + + + +D D H
Sbjct: 128 AFHLGGGLHHALQSKGAGFCVYNDASAAIAHLTEHYN-AKVLYIDTDVHH 176
>gi|298710180|emb|CBJ26255.1| histone deacetylase family protein, plastidal [Ectocarpus
siliculosus]
Length = 362
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 3/183 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
V GT+ A LAL+ G + N+ GG HHA + G G+ D+++ +++ + S IV
Sbjct: 148 VSGTVLAARLALKFGLACNLAGGTHHAHKGFGSGYTILNDLAVASRVVQADGTASKVTIV 207
Query: 281 DLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAG 337
D D HQG+G F ++ + + C + K A + P D+ L +
Sbjct: 208 DCDVHQGDGTATIFADDASVRTLSFHCQDNFPAVKPASDIDVGFPPGAGDEDLLSALRRV 267
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L + PD+++Y+AG D+ D LG + IS +G++ RD V E +P+ +
Sbjct: 268 LPHEFAQYPPDLVLYDAGVDMHAGDRLGKMLISDEGLLARDYYVISTCLEMGLPVACVVG 327
Query: 398 GGY 400
GGY
Sbjct: 328 GGY 330
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LAL+ G + N+ GG HHA + G G+ D+++ +++ + S IVD
Sbjct: 150 GTVLAARLALKFGLACNLAGGTHHAHKGFGSGYTILNDLAVASRVVQADGTASKVTIVDC 209
Query: 64 DAHQ 67
D HQ
Sbjct: 210 DVHQ 213
>gi|237653134|ref|YP_002889448.1| histone deacetylase [Thauera sp. MZ1T]
gi|237624381|gb|ACR01071.1| Histone deacetylase [Thauera sp. MZ1T]
Length = 305
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 125/296 (42%), Gaps = 30/296 (10%)
Query: 119 YNVHF-FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIA 177
Y HF L H F +K+ + L ++ D++ P S+ ++L A
Sbjct: 5 YADHFVLPLPAGHRFPMEKYSRLRARLR--------DSGLFADDDLRVPAAASDAEILRA 56
Query: 178 HTEKYLKSLKW-SFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRR-- 234
H YL+ + + + A + + + + R G TL A AL R
Sbjct: 57 HDAGYLQRVAGGTLDAAEVRRI-------GFPWSAAMVERSRRSAGATLAACRSALDREG 109
Query: 235 --GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
+ N+ GG HHA G GFC + D ++ + IVD D HQG+G
Sbjct: 110 GAACAANLAGGTHHAHRDFGSGFCVFNDAAIAALAMRAEGRAGRIAIVDCDVHQGDGTAT 169
Query: 293 DFMNETRIFIMETCITSKAK------EAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
+ +F TC AK +A +EL T D+ YL ++A L+
Sbjct: 170 ILADTPEVF---TCSLHGAKNFPFRKQASDLDVELPDDTGDEAYLAALDAALDTVFTRGR 226
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402
P++++Y AG D D LG LA+S G+ RRDE V + R VP+ + +GGY +
Sbjct: 227 PELVIYLAGADPYAGDRLGRLALSIDGLRRRDERVLGRCRAADVPVAVAMAGGYAQ 282
>gi|440792258|gb|ELR13486.1| oxidoreductase, aldo/keto reductase superfamily protein
[Acanthamoeba castellanii str. Neff]
Length = 719
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 135/301 (44%), Gaps = 50/301 (16%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY +Y+ +++ LE+L P ++ + LVE I D I P+ ++
Sbjct: 437 PVVYSDDYDQNWWGLERLLPLPLTLQDRKYH---GELAQGLVEKGVIKADQFIMPEVPTK 493
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
E L +T++YL SL S +A L P+ + M VGGT+ A +A
Sbjct: 494 EDLKEYNTQEYLTSLNQSRRLAEALGNPTLRYFPSLVIHTFVSGFMLEAVGGTVLASRVA 553
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
L RGW+IN+GGGFHHAS + G QG+G+
Sbjct: 554 LERGWAINLGGGFHHASASSGS--------------------------------QGDGFV 581
Query: 292 KDFMNETRIFIMETCITSKAKEAIRCRIELAPYT--------EDQHYLEKIEAGLERSLR 343
DF + ++++++ T + R R + + + YL+ + +E+++
Sbjct: 582 ADFGLDENVYLVDSH-TDQPNGHKRSRAHVRGASLGVPRQGMPKEEYLQWVATEVEKAIT 640
Query: 344 SFCPDIIVYNAG---TDVLLNDPLGLLAISPQGIIRRDELVFMKARE-RRVPIVMLTSGG 399
+F P ++ Y +G TD +P L + ++ RD LVF A + +P+VM+ SGG
Sbjct: 641 TFRPHMVFYISGSSPTDPTQGNPPPNLREA--WVVDRDALVFRLAVDTHSIPLVMVVSGG 698
Query: 400 Y 400
+
Sbjct: 699 W 699
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 28/38 (73%), Gaps = 3/38 (7%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASE---TKGGGFCA 38
GT+ A +AL RGW+IN+GGGFHHAS ++G GF A
Sbjct: 545 GTVLASRVALERGWAINLGGGFHHASASSGSQGDGFVA 582
>gi|70606055|ref|YP_254925.1| histone deacetylase [Sulfolobus acidocaldarius DSM 639]
gi|449066252|ref|YP_007433334.1| histone deacetylase [Sulfolobus acidocaldarius N8]
gi|449068528|ref|YP_007435609.1| histone deacetylase [Sulfolobus acidocaldarius Ron12/I]
gi|68566703|gb|AAY79632.1| histone deacetylase [Sulfolobus acidocaldarius DSM 639]
gi|449034760|gb|AGE70186.1| histone deacetylase [Sulfolobus acidocaldarius N8]
gi|449037036|gb|AGE72461.1| histone deacetylase [Sulfolobus acidocaldarius Ron12/I]
Length = 346
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 122/275 (44%), Gaps = 23/275 (8%)
Query: 162 NIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHV 221
++I+P +SEE LL H+ Y++ +K E + + K
Sbjct: 44 DVIKPDLISEEDLLKVHSRDYIQLVK-----KKSEEGTGYLDDGDTPAFKGMYEGALSRT 98
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 281
GT+ L + NIGGGFHHA + GFC + D++L +K+ Q K A+I D
Sbjct: 99 SGTVTTIKLLDKYDVVFNIGGGFHHAKYSSASGFCVFNDVALAIKIA-QEKYNRIALI-D 156
Query: 282 LDAHQGNGYEKDFMNET-----------RIFIMETC----ITSKAKEAIRCRIELAPYTE 326
+D H G+G + ++ R F T I E + + L P T
Sbjct: 157 IDGHHGDGTQYMLFDDPNSLKISLHMYHRGFFPGTGNYDEIGRGRGEGLVLNVPLPPGTG 216
Query: 327 DQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKAR 386
D+ YL+ + + S+ PD+I+ G D DPL L ++ +G + L+ A+
Sbjct: 217 DKEYLKAFTETVIPKVESYKPDLIIILNGGDSHFTDPLVELKLTNKGYVDVISLLKDLAQ 276
Query: 387 ERRVPIVMLTSGGY-LKQTARIIADSILNLADLGL 420
+ IVM GGY + TA+I SI LA+LGL
Sbjct: 277 RFKSKIVMTGGGGYSYEATAKIWVLSIATLAELGL 311
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
NIGGGFHHA + GFC + D++L +K+ Q K A+I D+D H
Sbjct: 116 NIGGGFHHAKYSSASGFCVFNDVALAIKIA-QEKYNRIALI-DIDGHH 161
>gi|393721715|ref|ZP_10341642.1| histone deacetylase [Sphingomonas echinoides ATCC 14820]
Length = 308
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 99/209 (47%), Gaps = 4/209 (1%)
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 281
GGT AG LAL RG++ N GG HHA G G+C D+++ L + + ++VD
Sbjct: 94 GGTWLAGKLALERGFAANSAGGSHHALAATGAGYCVLNDLAIAAVRLAEEDA-RRVLVVD 152
Query: 282 LDAHQGNGYEKDFMNETRI--FIMETCITSKAKEAIRCR-IELAPYTEDQHYLEKIEAGL 338
D HQG+G I + + A++A R + L T D YL + +
Sbjct: 153 CDVHQGDGTAALTAGHPGIATYSIHAEKNFPARKARSTRDVALPDGTGDAAYLAALSETV 212
Query: 339 ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSG 398
L + PD+I+Y AG D L +D LG LA++P+G++ RD L+ A R + + G
Sbjct: 213 LPMLDEYRPDLILYQAGVDPLADDRLGRLALTPKGLVARDALIGRAAAARGIALASTVGG 272
Query: 399 GYLKQTARIIADSILNLADLGLISRPYNI 427
GY A + + + LG R I
Sbjct: 273 GYGHDVAVLAEAHVRAMLTLGQAYRDARI 301
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT AG LAL RG++ N GG HHA G G+C D+++ L + + ++VD
Sbjct: 95 GTWLAGKLALERGFAANSAGGSHHALAATGAGYCVLNDLAIAAVRLAEEDA-RRVLVVDC 153
Query: 64 DAHQ 67
D HQ
Sbjct: 154 DVHQ 157
>gi|227828343|ref|YP_002830123.1| histone deacetylase superfamily protein [Sulfolobus islandicus
M.14.25]
gi|227831101|ref|YP_002832881.1| histone deacetylase superfamily protein [Sulfolobus islandicus
L.S.2.15]
gi|229579986|ref|YP_002838386.1| histone deacetylase superfamily protein [Sulfolobus islandicus
Y.G.57.14]
gi|229581353|ref|YP_002839752.1| histone deacetylase superfamily protein [Sulfolobus islandicus
Y.N.15.51]
gi|229585574|ref|YP_002844076.1| histone deacetylase superfamily protein [Sulfolobus islandicus
M.16.27]
gi|238620536|ref|YP_002915362.1| histone deacetylase superfamily protein [Sulfolobus islandicus
M.16.4]
gi|284998600|ref|YP_003420368.1| histone deacetylase superfamily protein [Sulfolobus islandicus
L.D.8.5]
gi|385776671|ref|YP_005649239.1| histone deacetylase superfamily protein [Sulfolobus islandicus
REY15A]
gi|227457549|gb|ACP36236.1| histone deacetylase superfamily [Sulfolobus islandicus L.S.2.15]
gi|227460139|gb|ACP38825.1| histone deacetylase superfamily [Sulfolobus islandicus M.14.25]
gi|228010702|gb|ACP46464.1| histone deacetylase superfamily [Sulfolobus islandicus Y.G.57.14]
gi|228012069|gb|ACP47830.1| histone deacetylase superfamily [Sulfolobus islandicus Y.N.15.51]
gi|228020624|gb|ACP56031.1| histone deacetylase superfamily [Sulfolobus islandicus M.16.27]
gi|238381606|gb|ACR42694.1| histone deacetylase superfamily [Sulfolobus islandicus M.16.4]
gi|284446496|gb|ADB87998.1| histone deacetylase superfamily [Sulfolobus islandicus L.D.8.5]
gi|323475419|gb|ADX86025.1| histone deacetylase superfamily [Sulfolobus islandicus REY15A]
Length = 351
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 41/307 (13%)
Query: 139 HIFNYLWKHIFNYLVEAK----FITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAA 194
H F L + + L+E + FIT +IEP+ +SEE L + H+++Y++ +K+
Sbjct: 21 HPFKSLRESMTKRLLEERSAFHFIT---LIEPKPISEEVLQLVHSKEYIEFVKYK----- 72
Query: 195 ISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGW----SINIGGGFHHASET 250
E + + K + G+++A L L +G +INIGGGFHHA
Sbjct: 73 SKEGQGYLDDGDTPAFKGIYEAALIRISGSVKA--LELIKGGEFNHAINIGGGFHHAKRN 130
Query: 251 KGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIME------ 304
+ GFC + D++L+ KL S S IVD+D H +G ++ +++ ++ +
Sbjct: 131 RAAGFCVFNDVALIAKL--GENSFSKIAIVDIDGHHADGTQELLIDDDKVLKISLHMFHP 188
Query: 305 ---------TCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAG 355
I E I L P T D YL + + + + P++I+ G
Sbjct: 189 NFFPGSGDVNEIGVGKGEGYTINIPLPPGTGDDGYLLAFDEIVIPVIERYKPELIILITG 248
Query: 356 TDVLLNDPLGLLAISPQG---IIRRDELVFMKARERRVPIVMLTSGGY-LKQTARIIADS 411
D NDPL L +S G ++ + + K R ++ML GGY TARI S
Sbjct: 249 GDSYFNDPLVELKLSTHGYLDVVTKVHHLAHKYSSGR--LIMLGGGGYNYDATARIWTIS 306
Query: 412 ILNLADL 418
I +A +
Sbjct: 307 IAEIAGI 313
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+INIGGGFHHA + GFC + D++L+ KL S S IVD+D H
Sbjct: 117 AINIGGGFHHAKRNRAAGFCVFNDVALIAKL--GENSFSKIAIVDIDGHH 164
>gi|220908103|ref|YP_002483414.1| histone deacetylase superfamily protein [Cyanothece sp. PCC 7425]
gi|219864714|gb|ACL45053.1| histone deacetylase superfamily [Cyanothece sp. PCC 7425]
Length = 305
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 128/303 (42%), Gaps = 26/303 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VY P Y V L H F K+ +++ L L E + P ++
Sbjct: 4 PLVYHPNYGV---PLPPGHRFPMLKFCRLYDLL-------LAEG-IASPAQFHLPALPAQ 52
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISE-VCPLVAVP--NYFVQKCYLRPMRYHVGGTLEAG 228
L H Y++S ++ +SE V + +P V + + VGGT+
Sbjct: 53 NWLEQVHEPTYIQS----YSDGTLSEKVLRRIGLPWSEALVHRTWTA-----VGGTILTA 103
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
LA G + N GG HHA G GFC + D+++ + + +I+DLD HQG+
Sbjct: 104 QLAFSHGLACNTAGGTHHAFPDYGSGFCIFNDLAIAARTVQHLGLAHKILIIDLDVHQGD 163
Query: 289 GYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
G F +++ +F + K+ + L EDQ YL + L L
Sbjct: 164 GTAFIFRHDSSVFTFSMHCQANFPATKQQSDLDVPLPVGMEDQPYLHTLSLHLSDLLSQV 223
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA 405
PD+++Y+AG D D LG LA++ G+ +R+ V P+ + GGY +
Sbjct: 224 KPDLVLYDAGVDPHWGDRLGKLALTDTGLYQRELYVLSTCIGAGYPVACVIGGGYAEDLK 283
Query: 406 RII 408
++
Sbjct: 284 ALV 286
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LA G + N GG HHA G GFC + D+++ + + +I+DL
Sbjct: 98 GTILTAQLAFSHGLACNTAGGTHHAFPDYGSGFCIFNDLAIAARTVQHLGLAHKILIIDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|377562735|ref|ZP_09792103.1| putative acetoin utilization protein [Gordonia sputi NBRC 100414]
gi|377530032|dbj|GAB37268.1| putative acetoin utilization protein [Gordonia sputi NBRC 100414]
Length = 414
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 125/281 (44%), Gaps = 34/281 (12%)
Query: 132 FDSKKWKHI--FNYLWKHIFNYLVEAKFITQD-NIIEPQEVSEEQLLIAHTEKYLKSLKW 188
F S +W H N + + L ++ + D ++ EP + ++ L + H+ Y+ +++
Sbjct: 11 FLSYRWAHTHPMNPVRLALTMTLAQSLGVLDDVDVSEPLAIGDDALTVVHSRDYIDAVR- 69
Query: 189 SFNVAAISEVCPLV------AVPNYFVQKCYLRPMRYHVGGTLEA----GFLALRRGWSI 238
+ S PL+ + V R VGGTL A G A+RR ++
Sbjct: 70 AVGSGTASLSGPLLERLFGLGDSDNPVFDGMHEAARLLVGGTLAAAQAVGSGAVRR--AV 127
Query: 239 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNET 298
NIGGG HHA ++ GFC Y D ++ + L ++ A I D+DAH G+G + F ++
Sbjct: 128 NIGGGMHHAMRSRAAGFCIYNDCAVAIHWLLENGFDRIAYI-DIDAHHGDGVQVAFASDP 186
Query: 299 RIFIME---------------TCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
R+ + T + A E I L P T+D+ +L A + +
Sbjct: 187 RVMTVSLHQHPATLWPGTGWPTEVGEDAAEGSAVNIALMPDTQDRLWLRAFHAVVPSLIA 246
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMK 384
F P II+ G D DPL L+++ G +R ++ M+
Sbjct: 247 EFKPQIIISQCGADSHRADPLTDLSLTVDG--QRAAMIAMR 285
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 4 GTLEA----GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 59
GTL A G A+RR ++NIGGG HHA ++ GFC Y D ++ + L ++ A
Sbjct: 110 GTLAAAQAVGSGAVRR--AVNIGGGMHHAMRSRAAGFCIYNDCAVAIHWLLENGFDRIAY 167
Query: 60 IVDLDAHQ 67
I D+DAH
Sbjct: 168 I-DIDAHH 174
>gi|294139409|ref|YP_003555387.1| histone deacetylase/AcuC/AphA family protein [Shewanella violacea
DSS12]
gi|293325878|dbj|BAJ00609.1| histone deacetylase/AcuC/AphA family protein [Shewanella violacea
DSS12]
Length = 311
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 3/183 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
GT+ A+ G +I++ GG+HHA G GFC + D+ L Q I +I+
Sbjct: 101 AAGTVLTAHKAIESGVAIHLSGGYHHAHNDFGSGFCLFNDLVLAAHFSLQKDDIHKVLII 160
Query: 281 DLDAHQGNGYEKDFMNETRIFIME-TCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAG 337
D D H G+G I + C + K + L T D+ +L +
Sbjct: 161 DSDVHHGDGTATLCQGRDDIITLSFHCDKNFPARKPDSDLDVPLTRGTGDETFLACFQQV 220
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
++ ++ PD+++Y+AG D+ +D LG L IS Q I RD + ++ +P+ +
Sbjct: 221 VQMAINLHRPDLVIYDAGVDLHRDDELGYLDISTQAIYLRDLFLLQTMQDNHIPVAAVVG 280
Query: 398 GGY 400
GGY
Sbjct: 281 GGY 283
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A+ G +I++ GG+HHA G GFC + D+ L Q I +I+D
Sbjct: 103 GTVLTAHKAIESGVAIHLSGGYHHAHNDFGSGFCLFNDLVLAAHFSLQKDDIHKVLIIDS 162
Query: 64 DAHQ 67
D H
Sbjct: 163 DVHH 166
>gi|375130376|ref|YP_004992476.1| histone deacetylase/AcuC/AphA family protein [Vibrio furnissii NCTC
11218]
gi|315179550|gb|ADT86464.1| histone deacetylase/AcuC/AphA family protein [Vibrio furnissii NCTC
11218]
Length = 306
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 3/183 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
GGT LA+ G +I++ GG+HHA G GFC Y D+ L I +IV
Sbjct: 100 AGGTCLTAQLAVEHGVAIHLSGGYHHAHRDFGSGFCLYNDLVLAAHQALLLDGIDKVLIV 159
Query: 281 DLDAHQGNGYEKDFMNETRIFIME-TCITSKAKEAIRCRIELAPYTE--DQHYLEKIEAG 337
D D H G+G I + C + I++A + D+ +L ++
Sbjct: 160 DSDVHHGDGTATLCAARDDIITLSFHCDKNFPARKPESDIDIALSRDAGDEEFLSHFQSV 219
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
+ ++ PD+I+Y+AG D+ +D LG +S I +RD + A++ ++P+ +
Sbjct: 220 VTMAVNLHRPDLIIYDAGIDIHQDDELGYFHVSTDAIFQRDCFMMRLAKQHQLPMACVVG 279
Query: 398 GGY 400
GGY
Sbjct: 280 GGY 282
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 58/144 (40%), Gaps = 29/144 (20%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LA+ G +I++ GG+HHA G GFC Y D+ L I +IVD
Sbjct: 102 GTCLTAQLAVEHGVAIHLSGGYHHAHRDFGSGFCLYNDLVLAAHQALLLDGIDKVLIVDS 161
Query: 64 DAHQ-------------------FSDYYFPSAHSIKRKRKVEFLKERKALEDEITSEPQE 104
D H D FP+ K + ++ R A ++E S Q
Sbjct: 162 DVHHGDGTATLCAARDDIITLSFHCDKNFPAR---KPESDIDIALSRDAGDEEFLSHFQ- 217
Query: 105 SVVT------RPWPIVYRPEYNVH 122
SVVT RP I+Y ++H
Sbjct: 218 SVVTMAVNLHRPDLIIYDAGIDIH 241
>gi|260767385|ref|ZP_05876323.1| histone deacetylase/AcuC/AphA family protein [Vibrio furnissii CIP
102972]
gi|260617620|gb|EEX42801.1| histone deacetylase/AcuC/AphA family protein [Vibrio furnissii CIP
102972]
Length = 306
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 3/183 (1%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
GGT LA+ G +I++ GG+HHA G GFC Y D+ L I +IV
Sbjct: 100 AGGTCLTAQLAVEHGVAIHLSGGYHHAHRDFGSGFCLYNDLVLAAHQALLLDGIDKVLIV 159
Query: 281 DLDAHQGNGYEKDFMNETRIFIME-TCITSKAKEAIRCRIELAPYTE--DQHYLEKIEAG 337
D D H G+G I + C + I++A + D+ +L ++
Sbjct: 160 DSDVHHGDGTATLCAARDDIITLSFHCDKNFPARKPESDIDIALSRDAGDEEFLSHFQSV 219
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
+ ++ PD+I+Y+AG D+ +D LG +S I +RD + A++ ++P+ +
Sbjct: 220 VTMAVNLHRPDLIIYDAGIDIHQDDELGYFHVSTDAIFQRDCFMMRLAKQHQLPMACVVG 279
Query: 398 GGY 400
GGY
Sbjct: 280 GGY 282
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 58/144 (40%), Gaps = 29/144 (20%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT LA+ G +I++ GG+HHA G GFC Y D+ L I +IVD
Sbjct: 102 GTCLTAQLAVEHGVAIHLSGGYHHAHRDFGSGFCLYNDLVLAAHQALLLDGIDKVLIVDS 161
Query: 64 DAHQ-------------------FSDYYFPSAHSIKRKRKVEFLKERKALEDEITSEPQE 104
D H D FP+ K + ++ R A ++E S Q
Sbjct: 162 DVHHGDGTATLCAARDDIITLSFHCDKNFPAR---KPESDIDIALSRDAGDEEFLSHFQ- 217
Query: 105 SVVT------RPWPIVYRPEYNVH 122
SVVT RP I+Y ++H
Sbjct: 218 SVVTMAVNLHRPDLIIYDAGIDIH 241
>gi|289675852|ref|ZP_06496742.1| histone deacetylase family protein [Pseudomonas syringae pv.
syringae FF5]
Length = 195
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 5/171 (2%)
Query: 237 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMN 296
+ ++ GG HHA GFC + D++++ + L QS + +I D D HQG+G + +
Sbjct: 2 ACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQGDGTAR-ILA 60
Query: 297 ETRIFIMETCITSKAKEAIRCR----IELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVY 352
+T I + K A + + I L D YL ++ L L + PD+++Y
Sbjct: 61 DTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVVDDLLNYLLPFYKPDLVLY 120
Query: 353 NAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+AG DV +D LG L ++ QG+ RDE V R +P++ + GGY K
Sbjct: 121 DAGVDVHKDDALGYLQLTDQGLANRDEAVLRHCLSRDIPVMGVIGGGYSKD 171
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+ ++ GG HHA GFC + D++++ + L QS + +I D D HQ
Sbjct: 2 ACHLAGGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQ 51
>gi|15805859|ref|NP_294557.1| histone deacetylase/AcuC/AphA family protein [Deinococcus
radiodurans R1]
gi|6458549|gb|AAF10411.1|AE001937_7 histone deacetylase/AcuC/AphA family protein [Deinococcus
radiodurans R1]
Length = 301
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 81/186 (43%), Gaps = 6/186 (3%)
Query: 221 VGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
GG+L A A GW N+ GG HHA + GFC D ++L ++ +
Sbjct: 93 AGGSLAALHDAQSTGWGANLAGGTHHAFHDRAEGFCLVNDAAILTRIALDRGLARRVATL 152
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSKA------KEAIRCRIELAPYTEDQHYLEKI 334
DLD HQGNG E T KE + L D YL +
Sbjct: 153 DLDVHQGNGTASLLTPEMAAGTAFTLSIHGERNYPFRKERSSLDLGLGDGVTDAEYLAVL 212
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
+L ++ PD+++Y AG DVL D G A++ G+ R+ VF A+ VPIV
Sbjct: 213 TGQALPALDAYRPDLLLYLAGADVLAGDRFGRFALTLSGVSARNRAVFRWAQAAGVPIVT 272
Query: 395 LTSGGY 400
+ +GGY
Sbjct: 273 MMAGGY 278
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
G+L A A GW N+ GG HHA + GFC D ++L ++ +DL
Sbjct: 95 GSLAALHDAQSTGWGANLAGGTHHAFHDRAEGFCLVNDAAILTRIALDRGLARRVATLDL 154
Query: 64 DAHQ---FSDYYFPSAH-------SIKRKRKVEFLKERKALE----DEITSEPQESVVTR 109
D HQ + P SI +R F KER +L+ D +T +V+T
Sbjct: 155 DVHQGNGTASLLTPEMAAGTAFTLSIHGERNYPFRKERSSLDLGLGDGVTDAEYLAVLTG 214
Query: 110 ---PWPIVYRPE 118
P YRP+
Sbjct: 215 QALPALDAYRPD 226
>gi|320451028|ref|YP_004203124.1| acetoin utilization protein AcuC [Thermus scotoductus SA-01]
gi|320151197|gb|ADW22575.1| acetoin utilization protein AcuC [Thermus scotoductus SA-01]
Length = 374
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 145/325 (44%), Gaps = 31/325 (9%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
++YR EY ++ F HPF + + + L++A + ++ + P E + E
Sbjct: 1 MIYRDEYRLYNFG--PSHPFSPVRLE---------MLTSLLKALGVWREPLA-PPEATRE 48
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPL-VAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+L H+E+ +K ++ + + ++ + + V R R VGGTLE
Sbjct: 49 DVLSVHSERLVKRVEAASRGEGVPDLEHYGLGTGDTPVFPGMDRAARILVGGTLEGARRI 108
Query: 232 LR-RGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
L + +GGG HHA + GFC Y D+S+ ++ L +S + A + D+D H G+G
Sbjct: 109 LAGEKRVLQLGGGLHHAQYDRSSGFCVYNDLSVAIRHLVRS-GLRVAYL-DIDVHHGDGV 166
Query: 291 EKDFMNETRIFIMETCITSK-------------AKEAI--RCRIELAPYTEDQHYLEKIE 335
+ E + + + + E + + + L P+TED+ YLE E
Sbjct: 167 QWIHYEEKEVLTISLHESGRYLFPGTGHVHEIGRGEGVGRKLNLPLEPFTEDESYLEVFE 226
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
A + +L +F PD++V AG D DPL L ++ + R LV A ++L
Sbjct: 227 ALVPWALGAFRPDVLVVQAGADAHFLDPLADLLLTTRAYERLFRLVLEYAEAYAGGRILL 286
Query: 396 TSGGYLKQTARIIADSILNLADLGL 420
T GG A + ++L L GL
Sbjct: 287 TLGGGYSLDAAVRVWALLYLVFHGL 311
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 19 INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+ +GGG HHA + GFC Y D+S+ ++ L +S + A + D+D H
Sbjct: 116 LQLGGGLHHAQYDRSSGFCVYNDLSVAIRHLVRS-GLRVAYL-DIDVHH 162
>gi|410697778|gb|AFV76846.1| deacetylase, histone deacetylase/acetoin utilization protein
[Thermus oshimai JL-2]
Length = 375
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 139/314 (44%), Gaps = 33/314 (10%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
++YR EY ++ F HPF + + + L+EA + + + P E + E
Sbjct: 2 VIYRDEYRLYNFG--PTHPFSPLRLE---------MLTSLLEALGVWRPPLA-PPEATRE 49
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPL-VAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
++L H+E+ ++ ++ + ++++ + + V R R VGGTLE
Sbjct: 50 EVLTVHSERLVRRVEAASRGEKVADLEHYGLGTGDTPVFPGMDRAARILVGGTLEGARRM 109
Query: 232 LR-RGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
L + +GGG HHA + GFC Y D+S+ ++ L +++ +D+D H G+G
Sbjct: 110 LAGEKRVLQLGGGLHHAQYDRASGFCVYNDLSVAIRHL--TRAGLKVAYLDIDVHHGDGV 167
Query: 291 EKDFMNETRIFIMETCITSK---------------AKEAIRCRIELAPYTEDQHYLEKIE 335
+ E + + + + A + + L P+TED YLE +
Sbjct: 168 QWIHYEEAEVLTLSLHESGRYLFPGTGHIHELGRGAGLGRKLNLPLEPFTEDGSYLEVFQ 227
Query: 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395
A + +L +F PD++V AG D DPL L ++ + L+ A V+L
Sbjct: 228 ALVPWALEAFRPDVLVVQAGADAHYQDPLADLLLTTRAYEALFRLILEYAEAYAGGRVLL 287
Query: 396 T-SGGY-LKQTARI 407
T GGY L T R+
Sbjct: 288 TLGGGYSLDATVRV 301
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 19 INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+ +GGG HHA + GFC Y D+S+ ++ L +++ +D+D H
Sbjct: 117 LQLGGGLHHAQYDRASGFCVYNDLSVAIRHL--TRAGLKVAYLDIDVHH 163
>gi|332795744|ref|YP_004457244.1| histone deacetylase superfamily protein [Acidianus hospitalis W1]
gi|332693479|gb|AEE92946.1| histone deacetylase superfamily [Acidianus hospitalis W1]
Length = 352
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 105/218 (48%), Gaps = 22/218 (10%)
Query: 221 VGGTLEAGFLALRRGW--SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
VGG+++A + +G+ +IN+GGGFHHA ++ GFC + D++L+ KL + I+
Sbjct: 102 VGGSVKA-LEMIEKGYDVAINLGGGFHHAKKSSASGFCVFNDVALIAKLAEKKYKIA--- 157
Query: 279 IVDLDAHQGNGYEKDFMNETRI-----------FIMETC----ITSKAKEAIRCRIELAP 323
IVD+D H G+G ++ ++ R+ F T I + + L P
Sbjct: 158 IVDIDGHHGDGTQQLLYDDNRVLKASLHMFHRNFFPGTGNYDEIGEGKGKGFTINVPLPP 217
Query: 324 YTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFM 383
T D Y+ + + + L F P++I+ G D +DPL L +S +G +
Sbjct: 218 GTADDAYISAFKEVVVKKLEKFKPELIIIVEGGDSHFDDPLVELKLSTKGYSEVINEILS 277
Query: 384 KARERRVPIVMLTSGGY-LKQTARIIADSILNLADLGL 420
AR I++L GGY + TARI + LA L +
Sbjct: 278 IARRFSSKIILLGGGGYNYEATARIWTITTAQLAGLDM 315
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 5/57 (8%)
Query: 13 LRRGW--SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+ +G+ +IN+GGGFHHA ++ GFC + D++L+ KL + I+ IVD+D H
Sbjct: 112 IEKGYDVAINLGGGFHHAKKSSASGFCVFNDVALIAKLAEKKYKIA---IVDIDGHH 165
>gi|308812688|ref|XP_003083651.1| Histone deacetylase superfamily (ISS) [Ostreococcus tauri]
gi|116055532|emb|CAL58200.1| Histone deacetylase superfamily (ISS) [Ostreococcus tauri]
Length = 749
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 16/195 (8%)
Query: 221 VGGTLE------AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSI 274
GGT+ AGF A + + GG HHA +G GFC + DI ++++ + + +
Sbjct: 535 TGGTVACAREVLAGFGARA---AAQLAGGTHHAYRDRGEGFCVFNDIGTAIRVVQRDELL 591
Query: 275 STA---MIVDLDAHQGNGYEKDFMNETRI--FIM--ETCITSKAKEAIRCRIELAPYTED 327
+++DLD HQGNG K F ++ ++ F M E K +E + L D
Sbjct: 592 PRDRKILVIDLDVHQGNGTAKMFEHDQQVVTFSMHGEKNYPIKTRERSTHDVGLPDDAND 651
Query: 328 QHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE 387
+ +LE+++ L R + + P ++ Y AG D L D G L ++ G++RR+ V+
Sbjct: 652 EMFLEQLDHWLPRLWQEYEPGLVFYQAGVDALAQDSFGRLGMTRNGLLRRNNAVYSMCIS 711
Query: 388 RRVPIVMLTSGGYLK 402
P+V+ GGY K
Sbjct: 712 TNTPLVITMGGGYSK 726
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 8 AGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA---MIVDLD 64
AGF A + + GG HHA +G GFC + DI ++++ + + + +++DLD
Sbjct: 547 AGFGARA---AAQLAGGTHHAYRDRGEGFCVFNDIGTAIRVVQRDELLPRDRKILVIDLD 603
Query: 65 AHQ 67
HQ
Sbjct: 604 VHQ 606
>gi|49483975|ref|YP_041199.1| histone deacetylase [Staphylococcus aureus subsp. aureus MRSA252]
gi|257425848|ref|ZP_05602272.1| histone deacetylase [Staphylococcus aureus subsp. aureus 55/2053]
gi|257428515|ref|ZP_05604913.1| histone deacetylase [Staphylococcus aureus subsp. aureus 65-1322]
gi|257431148|ref|ZP_05607525.1| histone deacetylase [Staphylococcus aureus subsp. aureus 68-397]
gi|257433830|ref|ZP_05610188.1| histone deacetylase [Staphylococcus aureus subsp. aureus E1410]
gi|257436747|ref|ZP_05612791.1| histone deacetylase [Staphylococcus aureus subsp. aureus M876]
gi|282904304|ref|ZP_06312192.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus C160]
gi|282906129|ref|ZP_06313984.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282909045|ref|ZP_06316863.1| histone deacetylase [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282911360|ref|ZP_06319162.1| histone deacetylase [Staphylococcus aureus subsp. aureus WBG10049]
gi|282914529|ref|ZP_06322315.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus M899]
gi|282919497|ref|ZP_06327232.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus C427]
gi|282924875|ref|ZP_06332541.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus C101]
gi|283958483|ref|ZP_06375934.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus A017934/97]
gi|293503607|ref|ZP_06667454.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus 58-424]
gi|293510623|ref|ZP_06669328.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus M809]
gi|293537164|ref|ZP_06671844.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus M1015]
gi|295428305|ref|ZP_06820934.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297590732|ref|ZP_06949370.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus MN8]
gi|384867304|ref|YP_005747500.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus TCH60]
gi|415682541|ref|ZP_11447857.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus CGS00]
gi|417889376|ref|ZP_12533466.1| histone deacetylase family [Staphylococcus aureus subsp. aureus
21195]
gi|418564576|ref|ZP_13128997.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21264]
gi|418582665|ref|ZP_13146741.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1605]
gi|418595345|ref|ZP_13158963.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21342]
gi|418602071|ref|ZP_13165485.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21345]
gi|418892471|ref|ZP_13446583.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1176]
gi|418898371|ref|ZP_13452440.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIGC341D]
gi|418901243|ref|ZP_13455298.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1214]
gi|418909591|ref|ZP_13463585.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG149]
gi|418917638|ref|ZP_13471596.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1267]
gi|418923424|ref|ZP_13477339.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1233]
gi|418982748|ref|ZP_13530455.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1242]
gi|418986413|ref|ZP_13534096.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1500]
gi|81650911|sp|Q6GFX3.1|ACUC_STAAR RecName: Full=Acetoin utilization protein AcuC
gi|49242104|emb|CAG40804.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus MRSA252]
gi|257271542|gb|EEV03688.1| histone deacetylase [Staphylococcus aureus subsp. aureus 55/2053]
gi|257275356|gb|EEV06843.1| histone deacetylase [Staphylococcus aureus subsp. aureus 65-1322]
gi|257278096|gb|EEV08744.1| histone deacetylase [Staphylococcus aureus subsp. aureus 68-397]
gi|257281923|gb|EEV12060.1| histone deacetylase [Staphylococcus aureus subsp. aureus E1410]
gi|257284098|gb|EEV14221.1| histone deacetylase [Staphylococcus aureus subsp. aureus M876]
gi|282313241|gb|EFB43637.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus C101]
gi|282317307|gb|EFB47681.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus C427]
gi|282321710|gb|EFB52035.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus M899]
gi|282325055|gb|EFB55365.1| histone deacetylase [Staphylococcus aureus subsp. aureus WBG10049]
gi|282327309|gb|EFB57604.1| histone deacetylase [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282331421|gb|EFB60935.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282595922|gb|EFC00886.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus C160]
gi|283790632|gb|EFC29449.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus A017934/97]
gi|290920009|gb|EFD97077.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus M1015]
gi|291095273|gb|EFE25538.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus 58-424]
gi|291466514|gb|EFF09035.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus M809]
gi|295127705|gb|EFG57342.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297575618|gb|EFH94334.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus MN8]
gi|312437809|gb|ADQ76880.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus TCH60]
gi|315195641|gb|EFU26028.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus CGS00]
gi|341851634|gb|EGS92548.1| histone deacetylase family [Staphylococcus aureus subsp. aureus
21195]
gi|371975713|gb|EHO93005.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21264]
gi|374397105|gb|EHQ68323.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21345]
gi|374401872|gb|EHQ72924.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21342]
gi|377701912|gb|EHT26238.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1214]
gi|377703517|gb|EHT27831.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1500]
gi|377703793|gb|EHT28105.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1242]
gi|377709408|gb|EHT33661.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1605]
gi|377729947|gb|EHT54024.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1176]
gi|377734148|gb|EHT58187.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1233]
gi|377749703|gb|EHT73647.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1267]
gi|377751400|gb|EHT75330.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG149]
gi|377759828|gb|EHT83708.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIGC341D]
Length = 389
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 136/300 (45%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ ++++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATDDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + ISE + N + + M H VGG L L + G ++N
Sbjct: 71 EAIKHASH-GIISEDEAMKYGLN-DEENGQFKHMHRHSATIVGGALTLADLIMS-GKALN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDSSFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ I+M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADTYTNGKIIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>gi|414161081|ref|ZP_11417344.1| acetoin utilization protein AcuC [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410876760|gb|EKS24658.1| acetoin utilization protein AcuC [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 384
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 133/300 (44%), Gaps = 38/300 (12%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L ++A ++ II P+ ++E+L + H+ Y+
Sbjct: 19 YRFSNEHPFNQMRLKLTTELL--------IDAGLLSSSQIITPRIATDEELTLIHSYDYV 70
Query: 184 KSLKWSFNVAAISEV-CPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFL----ALRR 234
++K + + +SEV N + + M H VGG L+ + ++
Sbjct: 71 NAIKHA-SRGILSEVESKKYGFANEDTSQ--FKHMHQHSARIVGGALKLADMIVQGEVKN 127
Query: 235 GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF 294
G ++GGG HHA + GFC Y DI++ K L + ++ MI+D DAH G+G + F
Sbjct: 128 G--CHLGGGLHHALPGRANGFCIYNDIAITAKYLSERYNMK-VMIIDTDAHHGDGVQWSF 184
Query: 295 MNETRIF---IMETC---------ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLE 339
+ I I ET T + KE + + L PYTED Y++ + +
Sbjct: 185 YTQNEILNYSIHETGKFLFPGSGHYTERGKEQGFSYSVNVPLEPYTEDDSYIDYFKRTVT 244
Query: 340 RSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGG 399
++SF PDII+ G D+ DPL + + + + A E VM+ GG
Sbjct: 245 PVVKSFKPDIILSVHGVDIHYLDPLTHMNCTLDSLYAIPYYIKALADEYTDGKVMMFGGG 304
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ K L + ++ MI+D DAH
Sbjct: 130 HLGGGLHHALPGRANGFCIYNDIAITAKYLSERYNMK-VMIIDTDAHH 176
>gi|298711263|emb|CBJ26508.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 341
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 88/175 (50%), Gaps = 9/175 (5%)
Query: 236 WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS--KSISTAMIVDLDAHQGNGYEKD 293
+S +I GG HHA +G GFC ++DI++ + + ++I +IVD D HQGNG
Sbjct: 138 FSGHIAGGTHHAFSDRGEGFCVFSDIAVAANVALRDYPETIRQILIVDCDVHQGNGNAVL 197
Query: 294 FMNETRIFIMETCITSKA-----KEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
F ++ + I KA KE IE+ D+ YL + L + PD
Sbjct: 198 FKSKPEVSTFS--IHCKANYFSEKEDSDVDIEVEEGAGDEEYLSLLSERLPSLVDHVRPD 255
Query: 349 IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403
+I Y G D L +D LG L+++ +G+ R+ LV+ A R +P V+ GGY K
Sbjct: 256 LIFYQGGVDPLEHDRLGRLSLTREGLRLRNRLVYDTALARGIPTVLTMGGGYPKD 310
Score = 44.7 bits (104), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 17 WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS--KSISTAMIVDLDAHQ 67
+S +I GG HHA +G GFC ++DI++ + + ++I +IVD D HQ
Sbjct: 138 FSGHIAGGTHHAFSDRGEGFCVFSDIAVAANVALRDYPETIRQILIVDCDVHQ 190
>gi|223043530|ref|ZP_03613575.1| acetoin utilization protein AcuC [Staphylococcus capitis SK14]
gi|417905938|ref|ZP_12549732.1| histone deacetylase family protein [Staphylococcus capitis VCU116]
gi|222443018|gb|EEE49118.1| acetoin utilization protein AcuC [Staphylococcus capitis SK14]
gi|341598324|gb|EGS40835.1| histone deacetylase family protein [Staphylococcus capitis VCU116]
Length = 390
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 133/301 (44%), Gaps = 37/301 (12%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L +A F+ ++I+ P+ ++E+L + H Y+
Sbjct: 19 YRFSNEHPFNQMRLKLTTELL--------KDANFLKNEHIVIPRIATDEELALIHQYDYI 70
Query: 184 KSLKW-SFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSI 238
++++ S + + E + +Q + M H VGG L + G I
Sbjct: 71 QAIRHASHGILSEHEAKKYGLNGDDTLQ---FKHMHRHSARIVGGALNLAD-CIMDGTFI 126
Query: 239 N---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFM 295
N +GGG HHA + GFC Y D+++ K L + K M++D DAH G+G + F
Sbjct: 127 NGCHLGGGLHHALPGRANGFCIYNDVAITAKYLVE-KYHQRVMVIDTDAHHGDGTQWSFY 185
Query: 296 NETRIF---IMETC---------ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLER 340
+ RI I ET T + ++ + L PYTED Y+E + +E
Sbjct: 186 TDNRIMTYSIHETGKFLFPGSGHYTERGEDIGYGYTVNVPLEPYTEDASYIEVFKETVEP 245
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVF-MKARERRVPIVMLTSGG 399
+ +F PDII+ G D+ DPL + + G+ ++ + R ++M GG
Sbjct: 246 LVAAFKPDIILSVHGVDIHYRDPLTHMNCTLNGLYSIPYIIQDLAKRYCNHKVLMFGGGG 305
Query: 400 Y 400
Y
Sbjct: 306 Y 306
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y D+++ K L + K M++D DAH
Sbjct: 130 HLGGGLHHALPGRANGFCIYNDVAITAKYLVE-KYHQRVMVIDTDAHH 176
>gi|311031292|ref|ZP_07709382.1| Histone deacetylase family protein, involved in acetoin utilization
[Bacillus sp. m3-13]
Length = 400
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 119/274 (43%), Gaps = 44/274 (16%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
+K + HPF+ + K ++ L K +K ++ +I+ P+ ++E+L + H +Y+
Sbjct: 24 YKFSENHPFNQLRVKLTYDLLQK--------SKLLSAQDIVPPRMATDEELALIHDPRYI 75
Query: 184 KSLKWS----------FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLA 231
+++K + N +E P+ PN L VGGTL A +
Sbjct: 76 EAVKLAGKGLLPKEKANNYGLGTEDTPIF--PNMHEASALL------VGGTLTAVDQVMT 127
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
+ ++N+GGG HH K GFC Y D ++ +K L Q K + + VD DAH G+G +
Sbjct: 128 GKSEHALNLGGGLHHGFRGKASGFCIYNDTAVAIKYL-QEKYGARVLYVDTDAHHGDGVQ 186
Query: 292 KDFMNETRIFIMETCITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEA 336
F + + + T + + R I + +TED +LE E
Sbjct: 187 WAFYEDPNVCTLSIHETGRYLFPGTGNVNERGQGDGYGYSFNIPIDAFTEDDSFLEVYEQ 246
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAIS 370
L F PD+I+ G D DPL L+ S
Sbjct: 247 SLTEVANFFKPDVILTQNGADAHYYDPLTHLSTS 280
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++N+GGG HH K GFC Y D ++ +K L Q K + + VD DAH
Sbjct: 133 ALNLGGGLHHGFRGKASGFCIYNDTAVAIKYL-QEKYGARVLYVDTDAHH 181
>gi|340357467|ref|ZP_08680082.1| acetoin utilization protein AcuC [Sporosarcina newyorkensis 2681]
gi|339617531|gb|EGQ22154.1| acetoin utilization protein AcuC [Sporosarcina newyorkensis 2681]
Length = 384
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 117/268 (43%), Gaps = 44/268 (16%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ + HPF+ K+ L K + L E I D I+ P+ ++E+LL+AH KY+
Sbjct: 16 YEFSETHPFNQKRI-----ILTKDL---LEEMHAIQPDEIVVPRSATDEELLLAHDAKYI 67
Query: 184 KSLK------WSFNVAAI----SEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLA 231
+ +K S N+ +I +E P PN L VGGTL A +
Sbjct: 68 EIVKKASKGEVSENIGSIYGIGTEDTPFF--PNMHEASALL------VGGTLTAIEEVME 119
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
R +++N+GGG HH + K GFC Y D S+ +K L Q K + + VD DAH G+G +
Sbjct: 120 GRSRYALNLGGGLHHGFQGKASGFCIYNDSSVAIKYL-QEKYGARVLYVDTDAHHGDGVQ 178
Query: 292 KDFMNETRI------------FIMETCITSKAKE---AIRCRIELAPYTEDQHYLEKIEA 336
F ++ + F +T + + +TED+ +L
Sbjct: 179 WTFYDDPSVCTFSIHETGRYLFPGTGNVTERGNGKGYGTSFNFPVDAFTEDESFLHIYRT 238
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPL 364
L F PD+I+ G D DPL
Sbjct: 239 ALREVAEFFKPDVILTQNGADAHYLDPL 266
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A + R +++N+GGG HH + K GFC Y D S+ +K L Q K + + V
Sbjct: 109 GTLTAIEEVMEGRSRYALNLGGGLHHGFQGKASGFCIYNDSSVAIKYL-QEKYGARVLYV 167
Query: 62 DLDAHQ 67
D DAH
Sbjct: 168 DTDAHH 173
>gi|441508325|ref|ZP_20990249.1| putative acetoin utilization protein [Gordonia aichiensis NBRC
108223]
gi|441447353|dbj|GAC48210.1| putative acetoin utilization protein [Gordonia aichiensis NBRC
108223]
Length = 414
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 125/281 (44%), Gaps = 34/281 (12%)
Query: 132 FDSKKWKHI--FNYLWKHIFNYLVEAKFITQD-NIIEPQEVSEEQLLIAHTEKYLKSLKW 188
F S +W H N + + L ++ + D ++ P ++ ++ L + H++ Y+ +++
Sbjct: 11 FLSYRWAHTHPMNPVRLALTMTLAQSLGVLDDIDVSPPLDIGDDALTVVHSQDYIDAVR- 69
Query: 189 SFNVAAISEVCPLV------AVPNYFVQKCYLRPMRYHVGGTLEA----GFLALRRGWSI 238
+ S PL+ + V R VGGTL A G A+RR ++
Sbjct: 70 AVGSGTASLSGPLLERLFGLGDSDNPVFDGMHEAARLLVGGTLAAAQAVGSGAVRR--AV 127
Query: 239 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNET 298
NIGGG HHA ++ GFC Y D ++ + L ++ A I D+DAH G+G + F ++
Sbjct: 128 NIGGGMHHAMRSRAAGFCIYNDCAVAIHWLLENGFDRIAYI-DIDAHHGDGVQVAFASDP 186
Query: 299 RIFIME---------------TCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
R+ + T + A + I L P T D+ +L A + +
Sbjct: 187 RVMTVSLHQHPATLWPGTGWPTEVGEDAGQGAAVNIALMPDTRDRLWLRAFHAVVPSLIA 246
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMK 384
F P II+ G D DPL L+++ G +R ++ M+
Sbjct: 247 EFKPQIIISQCGADSHRADPLTDLSLTVDG--QRAAMIAMR 285
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 4 GTLEA----GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 59
GTL A G A+RR ++NIGGG HHA ++ GFC Y D ++ + L ++ A
Sbjct: 110 GTLAAAQAVGSGAVRR--AVNIGGGMHHAMRSRAAGFCIYNDCAVAIHWLLENGFDRIAY 167
Query: 60 IVDLDAHQ 67
I D+DAH
Sbjct: 168 I-DIDAHH 174
>gi|377559225|ref|ZP_09788785.1| putative acetoin utilization protein [Gordonia otitidis NBRC
100426]
gi|377523683|dbj|GAB33950.1| putative acetoin utilization protein [Gordonia otitidis NBRC
100426]
Length = 414
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 124/281 (44%), Gaps = 34/281 (12%)
Query: 132 FDSKKWKHI--FNYLWKHIFNYLVEAKFITQD-NIIEPQEVSEEQLLIAHTEKYLKSLKW 188
F S +W H N + + L ++ + D ++ P ++ ++ L + H++ Y+ +++
Sbjct: 11 FLSYRWAHTHPMNPVRLALTMTLAQSLGVLDDVDVSPPLDIGDDALTVVHSQDYIDAVR- 69
Query: 189 SFNVAAISEVCPLV------AVPNYFVQKCYLRPMRYHVGGTLEA----GFLALRRGWSI 238
+ S PL+ + V R VGGTL A G A+RR ++
Sbjct: 70 AVGSGTASLSGPLLERLFGLGDSDNPVFDGMHEAARLLVGGTLAAAQAVGSGAVRR--AV 127
Query: 239 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNET 298
NIGGG HHA + GFC Y D ++ + L ++ A I D+DAH G+G + F +
Sbjct: 128 NIGGGMHHAMRARAAGFCIYNDCAVAIHWLLENGFDRIAYI-DIDAHHGDGVQVAFAADP 186
Query: 299 RIFIME---------------TCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
R+ + T + A E + L P T+D+ +L A + +
Sbjct: 187 RVMTVSLHQHPATLWPGTGWPTEVGDDAAEGSAVNVALMPDTQDRLWLRAFHAVVPSLIA 246
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMK 384
F P II+ G D DPL L+++ G +R ++ M+
Sbjct: 247 EFKPQIIISQCGADSHRADPLTDLSLTVDG--QRAAMIAMR 285
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 4 GTLEA----GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 59
GTL A G A+RR ++NIGGG HHA + GFC Y D ++ + L ++ A
Sbjct: 110 GTLAAAQAVGSGAVRR--AVNIGGGMHHAMRARAAGFCIYNDCAVAIHWLLENGFDRIAY 167
Query: 60 IVDLDAHQ 67
I D+DAH
Sbjct: 168 I-DIDAHH 174
>gi|397617237|gb|EJK64344.1| hypothetical protein THAOC_14934 [Thalassiosira oceanica]
Length = 345
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 94/207 (45%), Gaps = 30/207 (14%)
Query: 221 VGGTLEAGFLAL-----------RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLF 269
VGGT+ A R W +I GG HHA G GFC ++DI++ +L
Sbjct: 113 VGGTVAAACAVCEYEMRQSKDDPRPNWGAHIAGGTHHAFSDFGEGFCIFSDIAVAANVLL 172
Query: 270 QS-KSISTAMIVDLDAHQGNGYEKDFMNETRI--FIMETCITS--KAKEAIRCRIELAPY 324
SI +I+DLD HQGNG F + R+ F M C + KE +EL
Sbjct: 173 DKFPSIKRILIIDLDVHQGNGNAVLFQGDDRVQTFSMH-CAGNFFSKKEKSDLDVELPIG 231
Query: 325 TEDQHYLEKIEAGLER-----------SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQG 373
+D YL + L R S + F D I + +G D+L D LG L ++ +G
Sbjct: 232 CDDSTYLGTLSHWLRRIEEHEFSNTSPSQKKF--DFIFFQSGVDILKEDRLGKLEVTKEG 289
Query: 374 IIRRDELVFMKARERRVPIVMLTSGGY 400
+ R+ +VF A+ P+V+ GGY
Sbjct: 290 VSTRNRMVFDFAQRLGCPLVICMGGGY 316
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 14 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDLDAHQ 67
R W +I GG HHA G GFC ++DI++ +L SI +I+DLD HQ
Sbjct: 136 RPNWGAHIAGGTHHAFSDFGEGFCIFSDIAVAANVLLDKFPSIKRILIIDLDVHQ 190
>gi|444375853|ref|ZP_21175105.1| Histone deacetylase/AcuC/AphA family protein [Enterovibrio sp.
AK16]
gi|443680081|gb|ELT86729.1| Histone deacetylase/AcuC/AphA family protein [Enterovibrio sp.
AK16]
Length = 306
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/306 (23%), Positives = 129/306 (42%), Gaps = 33/306 (10%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWK----HIFNYLWKHIFNYLVEAKFITQDNIIEPQ 167
PI+Y P Y+ F L + H + +K++ HI W +T +P
Sbjct: 3 PIIYHPIYS--DFPLPEGHRYPLQKYRLLKEHIDEMGWP-----------VTT---FQPT 46
Query: 168 EVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP--NYFVQKCYLRPMRYHVGGTL 225
+ + L H Y+ +L +S PLV + + + ++ +GGT
Sbjct: 47 RLDHQHLKRFHDNDYVDAL--------VSGSLPLVKMRRIGFPWSEALIQRSLTSLGGTT 98
Query: 226 EAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAH 285
A+ G ++++ GG+HH+ + G GFC + D+ L +I +IVD D H
Sbjct: 99 LTVDKAIEHGVAVHLTGGYHHSHKDFGSGFCLFNDLILAADHALSYPNIDKVLIVDCDVH 158
Query: 286 QGNGYEKDFMNETRIFIMET-CITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSL 342
G+G I + C + K I + E YL + L ++
Sbjct: 159 HGDGTATLAQKREDIITLSVHCDKNFPSRKPDSDIDIPMPIGVESDTYLSEFVPVLTLAI 218
Query: 343 RSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402
PD+++Y+AG D+ ++D LG + + +GI RD+ V + +P+ + GGY
Sbjct: 219 AQHQPDMVIYDAGVDIHVDDELGYMNVCQRGIADRDKAVMETCHQNGIPVAAVIGGGYRT 278
Query: 403 QTARII 408
+ + ++
Sbjct: 279 EQSALV 284
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
A+ G ++++ GG+HH+ + G GFC + D+ L +I +IVD D H
Sbjct: 104 AIEHGVAVHLTGGYHHSHKDFGSGFCLFNDLILAADHALSYPNIDKVLIVDCDVHH 159
>gi|313680385|ref|YP_004058124.1| histone deacetylase [Oceanithermus profundus DSM 14977]
gi|313153100|gb|ADR36951.1| Histone deacetylase [Oceanithermus profundus DSM 14977]
Length = 378
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 126/314 (40%), Gaps = 48/314 (15%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
P+VYRPEY + F + HPF ++ + L + + +
Sbjct: 3 PVVYRPEYLTYDFGPQ--HPFSPQRLAMLVELL----------EELDPAWGPVAAVQARR 50
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFV--QKCYLRP-----MRYHVGGT 224
E +L H E++++ V A S+ P + Y + + P R+ VGGT
Sbjct: 51 EDVLTVHAERFVR------RVEAASQGAPPDDLDEYGLGTSDTPVFPGMDAAARWLVGGT 104
Query: 225 LEAGFL----ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280
L L RR + +GGG HHA + GFC Y D+++ + ++ + V
Sbjct: 105 LTGARLVSGGTARR--VLQLGGGLHHAQFDRASGFCVYNDLAVAIHHFLEAGM--RVLYV 160
Query: 281 DLDAHQGNGYEKDFMNETRIFIMETCITSK---------------AKEAIRCRIELAPYT 325
D+D H G+G + F + R+ + + + + L PYT
Sbjct: 161 DVDVHHGDGVQWIFYKDPRVLTLSLHESGRYLFPGTGGVFELGQGGGTGYSWNLPLEPYT 220
Query: 326 EDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKA 385
D YLE E E++L F PD+I+ AG D DPL L ++ + R + A
Sbjct: 221 GDACYLEGFERVFEKALAWFLPDVILVQAGADAHFLDPLADLMLTTRAYERIFTRILEGA 280
Query: 386 RERRVPIVMLTSGG 399
+ V+ T GG
Sbjct: 281 EQYTEGRVLFTLGG 294
>gi|384440157|ref|YP_005654881.1| Histone deacetylase superfamily [Thermus sp. CCB_US3_UF1]
gi|359291290|gb|AEV16807.1| Histone deacetylase superfamily [Thermus sp. CCB_US3_UF1]
Length = 374
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 137/322 (42%), Gaps = 49/322 (15%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
++YR EY ++ F E HPF + + + P E + E
Sbjct: 1 MIYRDEYRLYNFGPE--HPFSPLR----------LEMLLSLLQALGAWREPVPPPEATRE 48
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCP-----LVAVPNYFVQKCYLRPMRYHVGGTLEA 227
++L H+E+ ++ ++ A+ E P + + V R R VGGTLE
Sbjct: 49 EILSVHSERLVRRVE----AASRGERVPDLDHYGLGTSDTPVFPGMDRAARILVGGTLEG 104
Query: 228 GFLALRRGWS-----INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
RR S + +GGG HHA + GFC Y D+S+ ++ L S++ +D+
Sbjct: 105 A----RRILSGEKRVLQLGGGLHHAQYDRASGFCVYNDLSVAIRHL--SRAGLRVAYLDI 158
Query: 283 DAHQGNGYEKDFMNETRIFIMETCITSK-------------AKEAI--RCRIELAPYTED 327
D H G+G + E + + + + E + + + L P+TED
Sbjct: 159 DVHHGDGVQWIHYEEGEVLTLSLHESGRYLFPGTGHVHEIGRGEGVGRKLNLPLEPFTED 218
Query: 328 QHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE 387
+ YLE EA L +L++F PD++V AG D DPL L ++ + R L+ A
Sbjct: 219 ESYLEVFEALLPWALKAFRPDVLVVQAGADAHYLDPLADLLLTTRAYARLFPLILEYAEA 278
Query: 388 RRVPIVMLT-SGGY-LKQTARI 407
V+ T GGY L T R+
Sbjct: 279 FAGGRVLFTLGGGYSLDATVRV 300
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 19 INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+ +GGG HHA + GFC Y D+S+ ++ L S++ +D+D H
Sbjct: 116 LQLGGGLHHAQYDRASGFCVYNDLSVAIRHL--SRAGLRVAYLDIDVHH 162
>gi|86159808|ref|YP_466593.1| histone deacetylase superfamily protein [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85776319|gb|ABC83156.1| Histone deacetylase superfamily [Anaeromyxobacter dehalogenans
2CP-C]
Length = 594
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 127/303 (41%), Gaps = 19/303 (6%)
Query: 115 YRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQL 174
Y P Y + LE + ++ + W +L E + + P+ +S E L
Sbjct: 23 YDPRYRLPLSGLESGAGMEPRRADFV---AW-----WLAECGAVPRARRRAPRRISFEDL 74
Query: 175 LIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALR- 233
H + L+SL +A + V P VP V +R GGTL A LR
Sbjct: 75 ARVHDAELLESLGHPDTLARVFAVDP-SDVPVDEVMTT----VRLACGGTLGAARETLRT 129
Query: 234 RGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKD 293
R ++N+ GGFHHA GGFC D+++ + L ++DLDAH +G
Sbjct: 130 RAPAVNLLGGFHHAFPGAAGGFCPVNDVAVAIAALRADGFTGRVAVLDLDAHPPDGIAAC 189
Query: 294 FMNETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYN 353
+ +I + L P + D YLE + A L R R P +
Sbjct: 190 LARDPDHWIGSISGSDWGPLEGVDETVLPPGSGDAAYLEALGALLSRMPR---PQLAFVL 246
Query: 354 AGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSIL 413
AG DVL D G L +S G RD LV A VP V L +GGY +++ R +A + +
Sbjct: 247 AGGDVLAGDRFGQLGLSLDGARERDLLV--AAELDFVPSVWLAAGGYSRRSWRALAGTGM 304
Query: 414 NLA 416
+A
Sbjct: 305 AVA 307
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 4 GTLEAGFLALR-RGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 62
GTL A LR R ++N+ GGFHHA GGFC D+++ + L ++D
Sbjct: 118 GTLGAARETLRTRAPAVNLLGGFHHAFPGAAGGFCPVNDVAVAIAALRADGFTGRVAVLD 177
Query: 63 LDAH 66
LDAH
Sbjct: 178 LDAH 181
>gi|258424149|ref|ZP_05687031.1| acetoin utilization protein acuC [Staphylococcus aureus A9635]
gi|417890091|ref|ZP_12534170.1| histone deacetylase family [Staphylococcus aureus subsp. aureus
21200]
gi|418283968|ref|ZP_12896702.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21202]
gi|418306587|ref|ZP_12918368.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21194]
gi|418889537|ref|ZP_13443670.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1524]
gi|257845770|gb|EEV69802.1| acetoin utilization protein acuC [Staphylococcus aureus A9635]
gi|341855784|gb|EGS96628.1| histone deacetylase family [Staphylococcus aureus subsp. aureus
21200]
gi|365165363|gb|EHM57151.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21202]
gi|365246497|gb|EHM87045.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21194]
gi|377753045|gb|EHT76963.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1524]
Length = 389
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 133/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ ++++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATDDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + R M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFRHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHAVNVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADTYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>gi|311743330|ref|ZP_07717137.1| acetoin dehydrogenase AcuC [Aeromicrobium marinum DSM 15272]
gi|311313398|gb|EFQ83308.1| acetoin dehydrogenase AcuC [Aeromicrobium marinum DSM 15272]
Length = 393
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 103/234 (44%), Gaps = 30/234 (12%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
++ +E++L + HT Y++ ++ ++A E VP+ + R H
Sbjct: 49 VVGAAPATEDELALVHTPSYIERVQ---KLSAHPEYS---DVPHGLGTEDNPVFARMHEA 102
Query: 223 GTLEAG--FLALRRGWS------INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSI 274
L AG A RR W+ +N+ GG HHA + GFC Y D++L ++ L +
Sbjct: 103 SALIAGASVEAARRVWTGEVDRAVNVSGGLHHAMPGRASGFCIYNDVALAIRWLLDHGAE 162
Query: 275 STAMIVDLDAHQGNGYEKDFMNETRIFIME---------------TCITSKAKEAIRCRI 319
A VD+DAH G+G + F ++ R+ + T + E +
Sbjct: 163 RVAY-VDVDAHHGDGVQAMFWDDPRVLTISVHEGPQTLFPGTGYATETGGEGAEGTAVNV 221
Query: 320 ELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQG 373
L P T D +L A + + LR F PDI+V G D ++DPL L +S G
Sbjct: 222 PLPPGTSDAGWLRAFHAVVPQVLREFGPDILVTQHGCDSHMDDPLTNLMLSIDG 275
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 12 ALRRGWS------INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDA 65
A RR W+ +N+ GG HHA + GFC Y D++L ++ L + A VD+DA
Sbjct: 113 AARRVWTGEVDRAVNVSGGLHHAMPGRASGFCIYNDVALAIRWLLDHGAERVAY-VDVDA 171
Query: 66 HQ 67
H
Sbjct: 172 HH 173
>gi|392551183|ref|ZP_10298320.1| histone deacetylase superfamily protein [Pseudoalteromonas spongiae
UST010723-006]
Length = 298
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 135/302 (44%), Gaps = 25/302 (8%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
PI Y P Y+ L H F +K++ ++ ++ + + + +FIT P++ S
Sbjct: 4 PIFYHPSYSS--LSLPDNHRFPIEKYQLLYQFIKQELAE---QFRFIT------PEKASL 52
Query: 172 EQLLIAHTEKYLKS-LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFL 230
+ + H +++ + + AI ++ + + Y +G +++ L
Sbjct: 53 DDISKVHCPIFVQQFVTGTLEPKAIRKM-------GFPWSPQLVERTLYSIGASIQGAKL 105
Query: 231 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGY 290
AL + I GG+HH+ G GFC + D+ + + L + +S +I+DLD HQG+G
Sbjct: 106 ALETHIASQISGGYHHSFPNFGSGFCIFNDLVIAARHLLDNNLVSKVVILDLDVHQGDGS 165
Query: 291 E--KDFMNETRIFIMETCITS--KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
M++ I I C + K+ L + DQ Y ++ L +L
Sbjct: 166 AVCAQAMDDI-ITISLHCEQNFPAKKQHSDYDFTLNKHANDQEYQTMLQQCL-LTLLVEQ 223
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
PDI++YNAG D+ D LG +S G+ +R++ V +P+ + GGY +
Sbjct: 224 PDIVLYNAGADIYSGDELGYFNVSLAGLKQREQSVISFCASHDLPLFTASGGGYQRNVDN 283
Query: 407 II 408
++
Sbjct: 284 LV 285
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
+++ LAL + I GG+HH+ G GFC + D+ + + L + +S +I+DL
Sbjct: 98 ASIQGAKLALETHIASQISGGYHHSFPNFGSGFCIFNDLVIAARHLLDNNLVSKVVILDL 157
Query: 64 DAHQ 67
D HQ
Sbjct: 158 DVHQ 161
>gi|15896999|ref|NP_341604.1| acetylpolyamine aminohydrolase [Sulfolobus solfataricus P2]
gi|284173848|ref|ZP_06387817.1| acetylpolyamine aminohydrolase [Sulfolobus solfataricus 98/2]
gi|384433499|ref|YP_005642857.1| histone deacetylase [Sulfolobus solfataricus 98/2]
gi|13813158|gb|AAK40394.1| Acetylpolyamine aminohydrolase [Sulfolobus solfataricus P2]
gi|261601653|gb|ACX91256.1| Histone deacetylase [Sulfolobus solfataricus 98/2]
Length = 351
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 137/307 (44%), Gaps = 41/307 (13%)
Query: 139 HIFNYLWKHIFNYLVEAK----FITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAA 194
H F L + + L+E + FIT ++EP+ + EE L + H+++Y++ +K+
Sbjct: 21 HPFKSLRESMTKRLLEERGAFHFIT---LVEPKSIPEEALQLVHSKEYIEFVKYK----- 72
Query: 195 ISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRG---WSINIGGGFHHASETK 251
E + + K V G+++A L ++ G +INIGGGFHHA +
Sbjct: 73 SKEGQGYLDDGDTPAFKGIYEAALIRVSGSVKALEL-IKSGEFNHTINIGGGFHHAKRNR 131
Query: 252 GGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIME------- 304
GFC + D++L+ KL S IVD+D H +G ++ +++ I +
Sbjct: 132 AAGFCVFNDVALISKL--GESFFSRIAIVDIDGHHADGTQELLIDDNNILKISLHMFHPN 189
Query: 305 --------TCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGT 356
I E I L P T D YL + + ++ + P++I+ AG
Sbjct: 190 FFPGTGDVNEIGLGKGEGYTINIPLPPGTGDDGYLLAFDEIVVPAIERYKPELIILVAGG 249
Query: 357 DVLLNDPLGLLAISPQG----IIRRDELVFMKARERRVPIVMLTSGGY-LKQTARIIADS 411
D NDPL L +S G + + LV + R ++ML GGY TARI S
Sbjct: 250 DSHFNDPLVELKLSTHGYLDVVTKIHRLVHEYSNGR---LIMLGGGGYNYDATARIWTIS 306
Query: 412 ILNLADL 418
I +A +
Sbjct: 307 IAEIAGI 313
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+INIGGGFHHA + GFC + D++L+ KL S IVD+D H
Sbjct: 117 TINIGGGFHHAKRNRAAGFCVFNDVALISKL--GESFFSRIAIVDIDGHH 164
>gi|421873504|ref|ZP_16305117.1| acetoin utilization protein AcuC [Brevibacillus laterosporus GI-9]
gi|372457566|emb|CCF14666.1| acetoin utilization protein AcuC [Brevibacillus laterosporus GI-9]
Length = 395
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 125/289 (43%), Gaps = 36/289 (12%)
Query: 104 ESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNI 163
S VT ++Y +Y +FF E HPF+ K+ ++ + + +T +NI
Sbjct: 9 NSYVTSTPRLIYSADYTKYFFHEE--HPFNQKRLLLTYDLMQAY--------GLLTPENI 58
Query: 164 IEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH--- 220
I P+ ++E+LL+ H +YL+ +K E PL A + + +
Sbjct: 59 IAPRYATDEELLLVHDPRYLEIVK---RQGTQPEELPLAASYGLGTEDVPIFANMHEATS 115
Query: 221 --VGGTLEAGFLAL--RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST 276
VGG++ A + + + S N GG HHA + GFC Y D S+ + + + +
Sbjct: 116 LIVGGSISAVDIVMNGQAEHSFNPAGGLHHAFRGRASGFCIYNDCSVAIAYIRKHWD-AR 174
Query: 277 AMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK--------------AKEAIRC-RIEL 321
+ +D DAH G+G + F ++ + + T K + C + L
Sbjct: 175 VLYIDTDAHHGDGVQWAFYDDPNVMTISLHETGKYLFPGTGNVTERGDGQGFGYCVNVPL 234
Query: 322 APYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAIS 370
+TED +LE E+ L R F PDII+ G D DPL L+ S
Sbjct: 235 DAFTEDDSFLEIYESLLPRIAHGFQPDIIITQNGCDAHNYDPLTHLSCS 283
>gi|372489509|ref|YP_005029074.1| deacetylase [Dechlorosoma suillum PS]
gi|359356062|gb|AEV27233.1| deacetylase, histone deacetylase/acetoin utilization protein
[Dechlorosoma suillum PS]
Length = 300
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 110/261 (42%), Gaps = 27/261 (10%)
Query: 162 NIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYL------- 214
+ I P+ S E L AH Y + VC P Q +
Sbjct: 40 DFILPEAASREDLCRAHDPAY------------VERVCSGRLTPEEMRQIGFPWSDAMVE 87
Query: 215 RPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSI 274
RP R G TL A AL GW +N+ GG HHA+ G GFC + D ++ + L +
Sbjct: 88 RPRR-SAGATLGACRAALAEGWGVNLAGGTHHAAHAAGAGFCVFNDAAVAARALQAQGRV 146
Query: 275 STAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYL 331
++D D HQG+G + + +F AK IEL +D YL
Sbjct: 147 GQVAVIDCDVHQGDGTARILEGDASVFTFSIHGARNYPFAKARSDLDIELPDGCDDAAYL 206
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
+E GL P + +Y AG D D LG L+++ G+ RDE V RER +P
Sbjct: 207 AALEQGLADLFSRCRPQLAIYLAGADPYAGDRLGRLSLTMAGLEARDERVLAACRERGIP 266
Query: 392 IVMLTSGGYLKQTARIIADSI 412
+ + +GGY AR I D++
Sbjct: 267 VAIAMAGGY----ARDIGDTV 283
>gi|224476824|ref|YP_002634430.1| putative acetoin utilization protein [Staphylococcus carnosus
subsp. carnosus TM300]
gi|222421431|emb|CAL28245.1| putative acetoin utilization protein [Staphylococcus carnosus
subsp. carnosus TM300]
Length = 384
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 120/265 (45%), Gaps = 38/265 (14%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L ++A +T D II P+ ++++L + H+ Y+
Sbjct: 19 YRFSNDHPFNQMRLKLTTELL--------IDAGLLTPDQIITPRIATDDELTLIHSYDYV 70
Query: 184 KSLKW-SFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFL----ALRR 234
++K S + + SE Q + M H VGG L+ + L+
Sbjct: 71 NAIKHASHGILSPSEAKKYGLADEDTSQ---FKHMHQHSARIVGGALKLADMIVNDELQN 127
Query: 235 GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF 294
G ++GGG HHA + GFC Y D+++ K L + + M++D DAH G+G + F
Sbjct: 128 G--CHLGGGLHHALPGRANGFCIYNDVAITAKYLSKKYGLR-VMVIDTDAHHGDGVQWSF 184
Query: 295 MNETRIF---IMETC---------ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLE 339
+ I I ET T + KE + + L PYTED ++E + +
Sbjct: 185 YTDNDILNYSIHETGKFLFPGSGHYTERGKEQGFSYSVNVPLEPYTEDASFVECFKKTVT 244
Query: 340 RSLRSFCPDIIVYNAGTDVLLNDPL 364
++S+ PDI++ G D+ DPL
Sbjct: 245 PVVKSYQPDILLSVHGVDIHYLDPL 269
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y D+++ K L + + M++D DAH
Sbjct: 130 HLGGGLHHALPGRANGFCIYNDVAITAKYLSKKYGLR-VMVIDTDAHH 176
>gi|387780810|ref|YP_005755608.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus LGA251]
gi|344177912|emb|CCC88392.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus LGA251]
Length = 389
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 136/303 (44%), Gaps = 41/303 (13%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ ++++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATDDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFV---QKCYLRPMRYH----VGGTLEAGFLALRRGW 236
+++K + + ISE A Y + + + M H VGG L L + G
Sbjct: 71 EAIKHASH-GIISED----AAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GK 124
Query: 237 SIN---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKD 293
+N +GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G +
Sbjct: 125 VLNGCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWS 183
Query: 294 F----------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGL 338
F ++ET F+ T + ++ + L PYTED +LE + +
Sbjct: 184 FYADNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTINVPLEPYTEDASFLECFKLTV 243
Query: 339 ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTS 397
E ++SF PDII+ G D+ DPL L + + V ++ ++M
Sbjct: 244 EPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADTYTNGKVIMFGG 303
Query: 398 GGY 400
GGY
Sbjct: 304 GGY 306
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>gi|21283407|ref|NP_646495.1| acetoin utilization protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49486560|ref|YP_043781.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus MSSA476]
gi|297207553|ref|ZP_06923988.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300911634|ref|ZP_07129078.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus TCH70]
gi|418934694|ref|ZP_13488516.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIGC128]
gi|418988791|ref|ZP_13536463.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1835]
gi|448740449|ref|ZP_21722428.1| acetoin utilization protein [Staphylococcus aureus KT/314250]
gi|38604907|sp|Q8NW34.1|ACUC_STAAW RecName: Full=Acetoin utilization protein AcuC
gi|81649144|sp|Q6G8J2.1|ACUC_STAAS RecName: Full=Acetoin utilization protein AcuC
gi|21204847|dbj|BAB95543.1| acetoin utilization protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49245003|emb|CAG43464.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus MSSA476]
gi|296887570|gb|EFH26468.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300887055|gb|EFK82256.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus TCH70]
gi|377717884|gb|EHT42059.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1835]
gi|377770788|gb|EHT94549.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIGC128]
gi|445548933|gb|ELY17180.1| acetoin utilization protein [Staphylococcus aureus KT/314250]
Length = 389
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ ++++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATDDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENSQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>gi|294011535|ref|YP_003544995.1| histone deacetylase family protein [Sphingobium japonicum UT26S]
gi|292674865|dbj|BAI96383.1| histone deacetylase family protein [Sphingobium japonicum UT26S]
Length = 321
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 98/204 (48%), Gaps = 10/204 (4%)
Query: 222 GGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 281
GGT A LA+R G++ N GG HHA G G+C + D+++ L +I+D
Sbjct: 114 GGTWLAARLAMRHGYAANAAGGSHHALPGSGAGYCVFNDLAIAANRLIAEGDARRILILD 173
Query: 282 LDAHQGNGYEKDFMNETRIFIM-----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEA 336
LD HQG+G IF + KA+ + I L T D+ Y++ +
Sbjct: 174 LDVHQGDGTAVLTGGRGDIFTLSIHADRNFPVRKARSTL--DIGLPDGTGDEAYMDALMK 231
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
+ L F PD+I+Y AG D D LG LA+S G+ RRD V AR R +P+
Sbjct: 232 VMPPVLDDFRPDLILYQAGVDPHEEDRLGRLALSDAGLDRRDRAVMRAARRRGIPLASTM 291
Query: 397 SGGYLKQ---TARIIADSILNLAD 417
GGY + AR AD ++ LA+
Sbjct: 292 GGGYGEDRMAIARRHADCMIRLAE 315
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A LA+R G++ N GG HHA G G+C + D+++ L +I+DL
Sbjct: 115 GTWLAARLAMRHGYAANAAGGSHHALPGSGAGYCVFNDLAIAANRLIAEGDARRILILDL 174
Query: 64 DAHQ 67
D HQ
Sbjct: 175 DVHQ 178
>gi|156324737|ref|XP_001618473.1| hypothetical protein NEMVEDRAFT_v1g154458 [Nematostella vectensis]
gi|156199037|gb|EDO26373.1| predicted protein [Nematostella vectensis]
Length = 152
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 3/147 (2%)
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
+AL G + + GGG HHA + G GFC + D+++ L + ++ MIVDLD HQG+G
Sbjct: 5 IALECGLACSTGGGTHHAFPSHGSGFCIFNDLAITASYLLDNNLVTRVMIVDLDVHQGDG 64
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
F NE +F K+ + L +D YL + A L L +
Sbjct: 65 TASIFQNEPNVFTFSAHSEKNFPLRKQTSNLDLSLECGMDDLEYLTTVRAHLTWLLDMWR 124
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQG 373
PDI++Y+AG D ++D LG L ++ G
Sbjct: 125 PDIVLYDAGVDPHVDDVLGRLKLTDNG 151
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 11 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+AL G + + GGG HHA + G GFC + D+++ L + ++ MIVDLD HQ
Sbjct: 5 IALECGLACSTGGGTHHAFPSHGSGFCIFNDLAITASYLLDNNLVTRVMIVDLDVHQ 61
>gi|386831332|ref|YP_006237986.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|417799844|ref|ZP_12446976.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21310]
gi|418655462|ref|ZP_13217317.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-105]
gi|334272376|gb|EGL90741.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21310]
gi|375036820|gb|EHS29883.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-105]
gi|385196724|emb|CCG16354.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus HO 5096 0412]
Length = 389
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ ++++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATDDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 IKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>gi|82751324|ref|YP_417065.1| acetoin utilization protein [Staphylococcus aureus RF122]
gi|82656855|emb|CAI81284.1| acetoin utilization protein [Staphylococcus aureus RF122]
Length = 389
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 129/300 (43%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ ++++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATDDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMN 296
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 297 ETRIFIMETCITSK-----------AKEAI----RCRIELAPYTEDQHYLEKIEAGLERS 341
+ + T K E I + L PYTED +LE + +E
Sbjct: 187 DNHVITYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADTYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>gi|330835421|ref|YP_004410149.1| histone deacetylase superfamily protein [Metallosphaera cuprina
Ar-4]
gi|329567560|gb|AEB95665.1| histone deacetylase superfamily protein [Metallosphaera cuprina
Ar-4]
Length = 348
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 122/287 (42%), Gaps = 34/287 (11%)
Query: 151 YLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKW-SFNVAAISEVCPLVAVPNYFV 209
Y+ E F Q + P E L H+ Y++ +K S + + A F
Sbjct: 34 YMEERGFFHQMEVRRPDPPDENVLYSLHSRDYVEFVKLKSIEGEGLLDYGDTPAFKGVF- 92
Query: 210 QKCYLRPMRYHVGGTLEAGFLALRRGW--SINIGGGFHHASETKGGGFCAYADISLLVKL 267
+ +R M G++ G L +G+ +INIGGG HHA + GFC + D++L K
Sbjct: 93 ESSLIRVM-----GSV-TGIRLLSQGYEHAINIGGGLHHAQRSSASGFCVFNDVALAAKE 146
Query: 268 LFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSK---------------AK 312
K IVD+D H G+G + ++ + + + K A
Sbjct: 147 --GEKFFKRIAIVDVDGHHGDGTQALLYDDPNVLKVSLHMYHKGFFPGTGEVYEDGIGAG 204
Query: 313 EAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQ 372
+ + + L P T D YL + + L F P++I+ G D +DPL L +S +
Sbjct: 205 KGLTVNVPLPPGTGDDAYLYAFDEVVMPLLNRFGPEVIIIQEGGDSHFDDPLVELKLSTR 264
Query: 373 G---IIRRDELVFMKARERRVPIVMLTSGGY-LKQTARIIADSILNL 415
G IIRR + A ER I++L GGY TARI S+ L
Sbjct: 265 GYLSIIRR---IHNLAHERSSKILLLGGGGYNYDATARIWTVSVAEL 308
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 8 AGFLALRRGW--SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDA 65
G L +G+ +INIGGG HHA + GFC + D++L K K IVD+D
Sbjct: 104 TGIRLLSQGYEHAINIGGGLHHAQRSSASGFCVFNDVALAAKE--GEKFFKRIAIVDVDG 161
Query: 66 HQ 67
H
Sbjct: 162 HH 163
>gi|57652033|ref|YP_186618.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus COL]
gi|87160179|ref|YP_494375.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88195547|ref|YP_500353.1| hypothetical protein SAOUHSC_01849 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|151221840|ref|YP_001332662.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus str. Newman]
gi|161509951|ref|YP_001575610.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221142370|ref|ZP_03566863.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|258450871|ref|ZP_05698924.1| acetoin utilization protein acuC [Staphylococcus aureus A5948]
gi|282924425|ref|ZP_06332098.1| acetoin utilization protein acuC [Staphylococcus aureus A9765]
gi|284024782|ref|ZP_06379180.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus 132]
gi|294849896|ref|ZP_06790635.1| acetoin utilization protein acuC [Staphylococcus aureus A9754]
gi|304380670|ref|ZP_07363341.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|379014934|ref|YP_005291170.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus VC40]
gi|384862331|ref|YP_005745051.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|384870273|ref|YP_005752987.1| Acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus T0131]
gi|385782009|ref|YP_005758180.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus 11819-97]
gi|387143330|ref|YP_005731723.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus TW20]
gi|415688103|ref|ZP_11451870.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CGS01]
gi|417649583|ref|ZP_12299380.1| histone deacetylase family [Staphylococcus aureus subsp. aureus
21189]
gi|418281270|ref|ZP_12894084.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21178]
gi|418284413|ref|ZP_12897135.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21209]
gi|418318145|ref|ZP_12929557.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21232]
gi|418571361|ref|ZP_13135596.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21283]
gi|418572397|ref|ZP_13136608.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21333]
gi|418643298|ref|ZP_13205473.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-24]
gi|418647053|ref|ZP_13209133.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-88]
gi|418651151|ref|ZP_13213161.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-91]
gi|418659599|ref|ZP_13221263.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-111]
gi|418906673|ref|ZP_13460698.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|418925985|ref|ZP_13479887.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG2018]
gi|418929075|ref|ZP_13482961.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1612]
gi|418947481|ref|ZP_13499848.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-157]
gi|418953860|ref|ZP_13505845.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-189]
gi|419774089|ref|ZP_14300070.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus CO-23]
gi|422742902|ref|ZP_16796901.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus MRSA177]
gi|422745031|ref|ZP_16798980.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus MRSA131]
gi|424785618|ref|ZP_18212419.1| NAD-independent protein deacetylase AcuC [Staphylococcus aureus
CN79]
gi|440708377|ref|ZP_20889044.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21282]
gi|440735175|ref|ZP_20914785.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|448745121|ref|ZP_21726990.1| acetoin utilization protein AcuC [Staphylococcus aureus KT/Y21]
gi|81694282|sp|Q5HF39.1|ACUC_STAAC RecName: Full=Acetoin utilization protein AcuC
gi|57286219|gb|AAW38313.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus COL]
gi|87126153|gb|ABD20667.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|87203105|gb|ABD30915.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|150374640|dbj|BAF67900.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus str. Newman]
gi|160368760|gb|ABX29731.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|257861407|gb|EEV84215.1| acetoin utilization protein acuC [Staphylococcus aureus A5948]
gi|269941213|emb|CBI49601.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus TW20]
gi|282592926|gb|EFB97929.1| acetoin utilization protein acuC [Staphylococcus aureus A9765]
gi|294823235|gb|EFG39665.1| acetoin utilization protein acuC [Staphylococcus aureus A9754]
gi|302751560|gb|ADL65737.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|304340777|gb|EFM06706.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|315197202|gb|EFU27541.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CGS01]
gi|320141678|gb|EFW33513.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320143832|gb|EFW35605.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus MRSA177]
gi|329314408|gb|AEB88821.1| Acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus T0131]
gi|329726976|gb|EGG63433.1| histone deacetylase family [Staphylococcus aureus subsp. aureus
21189]
gi|364522998|gb|AEW65748.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus 11819-97]
gi|365165595|gb|EHM57379.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21178]
gi|365173435|gb|EHM63998.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21209]
gi|365244037|gb|EHM84703.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21232]
gi|371980363|gb|EHO97572.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21283]
gi|371984450|gb|EHP01562.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21333]
gi|374363631|gb|AEZ37736.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus VC40]
gi|375014661|gb|EHS08338.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-24]
gi|375026527|gb|EHS19908.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-91]
gi|375031072|gb|EHS24362.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-88]
gi|375034824|gb|EHS27973.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-111]
gi|375374219|gb|EHS77859.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-189]
gi|375375718|gb|EHS79284.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-157]
gi|377738987|gb|EHT62996.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1612]
gi|377745054|gb|EHT69031.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG2018]
gi|377762578|gb|EHT86440.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|383972120|gb|EID88171.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus CO-23]
gi|421956114|gb|EKU08444.1| NAD-independent protein deacetylase AcuC [Staphylococcus aureus
CN79]
gi|436430924|gb|ELP28279.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|436505051|gb|ELP41007.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21282]
gi|445561561|gb|ELY17758.1| acetoin utilization protein AcuC [Staphylococcus aureus KT/Y21]
Length = 389
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ ++++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATDDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>gi|418316815|ref|ZP_12928246.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21340]
gi|418875664|ref|ZP_13429920.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIGC93]
gi|365240216|gb|EHM80998.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21340]
gi|377769736|gb|EHT93504.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIGC93]
Length = 389
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ ++++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATDDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>gi|409390118|ref|ZP_11241889.1| putative acetoin utilization protein [Gordonia rubripertincta NBRC
101908]
gi|403199945|dbj|GAB85123.1| putative acetoin utilization protein [Gordonia rubripertincta NBRC
101908]
Length = 418
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 120/281 (42%), Gaps = 34/281 (12%)
Query: 132 FDSKKWKHI--FNYLWKHIFNYLVEAKFITQD-NIIEPQEVSEEQLLIAHTEKYLKSLKW 188
F S +W H N + + L ++ + D + PQ + ++ L + HT Y+ +++
Sbjct: 15 FLSYRWAHTHPMNPVRLALTMTLAQSLGVLDDVETVPPQAIDDDALTVVHTRDYIDAVR- 73
Query: 189 SFNVAAISEVCPLV------AVPNYFVQKCYLRPMRYHVGGTLEAGFL----ALRRGWSI 238
+ S PL+ + V R VGGTL A A R ++
Sbjct: 74 AVGSGTASLSGPLLERLFGLGDADNPVFAGMHEAARLLVGGTLAAAQTVASGAATR--AV 131
Query: 239 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNET 298
NIGGG HHA + + GFC Y D ++ ++ L K +D+DAH G+G + +F +
Sbjct: 132 NIGGGMHHAMKARAAGFCIYNDCAIAIRYLLD-KGFDRIAYIDVDAHHGDGVQVEFAADP 190
Query: 299 RIFIME---------------TCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
R+ + T + + + L P TED+ +L A + +
Sbjct: 191 RVMTVSLHQHPATLWPGTGWPTEVGDGDAQGSAVNLALMPNTEDRLWLRAFHAVVPSLIA 250
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMK 384
F P IIV G D DPL L+++ +G +R ++ M+
Sbjct: 251 EFKPQIIVSQCGADSHRADPLTDLSLTVEG--QRAAMIAMR 289
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++NIGGG HHA + + GFC Y D ++ ++ L K +D+DAH
Sbjct: 130 AVNIGGGMHHAMKARAAGFCIYNDCAIAIRYLLD-KGFDRIAYIDVDAHH 178
>gi|417653456|ref|ZP_12303187.1| histone deacetylase family [Staphylococcus aureus subsp. aureus
21193]
gi|329733147|gb|EGG69484.1| histone deacetylase family [Staphylococcus aureus subsp. aureus
21193]
Length = 389
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ ++++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATDDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>gi|452995875|emb|CCQ92264.1| protein deacetylase [Clostridium ultunense Esp]
Length = 378
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 120/276 (43%), Gaps = 31/276 (11%)
Query: 114 VYRPEY-NVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
+Y P N HF HPF+ K+ + + + E I + I P+ ++E
Sbjct: 8 IYSPALLNYHF---HDEHPFNQKRLELTLSLI--------RELGLIDESQIQSPRMATDE 56
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPL-VAVPNYFVQKCYLRPMRYHVGGTLEAGFLA 231
+L + H Y++++K + ++ P + + + VGG L A
Sbjct: 57 ELTLIHEPYYIEAVKKAGEMSGSFLGLPYGLGTEDVPIFPGMHEASALSVGGALVAADYV 116
Query: 232 LRRGW--SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
+ + ++++GGG HHA + GFC Y D S+ + + + K + + VD DAH G+G
Sbjct: 117 MEKPGRHALHLGGGLHHAFRGRASGFCVYNDCSVAIAYV-REKYRARVLYVDTDAHHGDG 175
Query: 290 YEKDFMNETRIFIMETCITSK---------------AKEAIRCRIELAPYTEDQHYLEKI 334
+ F ++ + + T K + + L P+TED YLE
Sbjct: 176 VQWAFYQDSDVMTLSFHETGKYLFPGTGNIYERGEGEGYGLSLNVPLEPFTEDDSYLEAY 235
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAIS 370
E +E+++R F PD++ G D DPL L++S
Sbjct: 236 ERVIEKAIRFFKPDLLFTQNGADAHRYDPLTHLSVS 271
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++++GGG HHA + GFC Y D S+ + + + K + + VD DAH
Sbjct: 124 ALHLGGGLHHAFRGRASGFCVYNDCSVAIAYV-REKYRARVLYVDTDAHH 172
>gi|253732384|ref|ZP_04866549.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253734481|ref|ZP_04868646.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus TCH130]
gi|282916995|ref|ZP_06324753.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus D139]
gi|283770813|ref|ZP_06343705.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus H19]
gi|384550550|ref|YP_005739802.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus JKD6159]
gi|418312977|ref|ZP_12924476.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21334]
gi|418562627|ref|ZP_13127084.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21262]
gi|418600111|ref|ZP_13163582.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21343]
gi|418645848|ref|ZP_13207965.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-55]
gi|421148391|ref|ZP_15608051.1| acetoin utilization protein [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|443638504|ref|ZP_21122543.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21196]
gi|253723906|gb|EES92635.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253727535|gb|EES96264.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus TCH130]
gi|282319482|gb|EFB49834.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus D139]
gi|283460960|gb|EFC08050.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus H19]
gi|302333399|gb|ADL23592.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus JKD6159]
gi|365236987|gb|EHM77860.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21334]
gi|371973731|gb|EHO91079.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21262]
gi|374395267|gb|EHQ66537.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21343]
gi|375022154|gb|EHS15641.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-55]
gi|394331534|gb|EJE57617.1| acetoin utilization protein [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|443409013|gb|ELS67518.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21196]
Length = 389
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ ++++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATDDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADTYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>gi|379796096|ref|YP_005326095.1| Acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus MSHR1132]
gi|356873087|emb|CCE59426.1| Acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus MSHR1132]
Length = 389
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 130/300 (43%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L ++A + + I++P+ ++++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LDANLLDPEQIVQPRIATDDELMLVHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISDDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GEVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMN 296
+GGG HHA + GFC Y DI++ K L +K ++VD DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAVTAKYL-ATKYQQRVLVVDTDAHHGDGTQWSFYA 186
Query: 297 ETRIFIMETCITSK-----------AKEAI----RCRIELAPYTEDQHYLEKIEAGLERS 341
+ I T K E I + L PYTED ++E + +E
Sbjct: 187 DNHIATYSIHETGKFLFPGSGHYTERGEDIGFGHSINVPLEPYTEDASFIECFKMTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE-RRVPIVMLTSGGY 400
+++F PDII+ G D+ DPL L + + + V A + ++M GGY
Sbjct: 247 VKAFKPDIILGVNGVDIHYRDPLTHLNCTLKSLYEIPYFVKKLADQYTNGKVIMFGGGGY 306
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ K L +K ++VD DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAVTAKYL-ATKYQQRVLVVDTDAHH 176
>gi|417796461|ref|ZP_12443671.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21305]
gi|418872486|ref|ZP_13426824.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-125]
gi|334269165|gb|EGL87593.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21305]
gi|375367140|gb|EHS71109.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-125]
Length = 375
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ ++++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATDDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>gi|418321408|ref|ZP_12932754.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus VCU006]
gi|365225640|gb|EHM66883.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus VCU006]
Length = 375
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ ++++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATDDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>gi|418560500|ref|ZP_13125015.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21252]
gi|418994454|ref|ZP_13542089.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG290]
gi|371972060|gb|EHO89451.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21252]
gi|377744251|gb|EHT68229.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG290]
Length = 389
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ ++++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATDDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHAVNVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADTYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>gi|404258488|ref|ZP_10961807.1| putative acetoin utilization protein [Gordonia namibiensis NBRC
108229]
gi|403403002|dbj|GAC00217.1| putative acetoin utilization protein [Gordonia namibiensis NBRC
108229]
Length = 418
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 120/281 (42%), Gaps = 34/281 (12%)
Query: 132 FDSKKWKHI--FNYLWKHIFNYLVEAKFITQD-NIIEPQEVSEEQLLIAHTEKYLKSLKW 188
F S +W H N + + L ++ + D + PQ + ++ L + HT Y+ +++
Sbjct: 15 FLSYRWAHTHPMNPVRLALTMTLAQSLGVLDDVETVPPQAIDDDALTVVHTRDYIDAVR- 73
Query: 189 SFNVAAISEVCPLV------AVPNYFVQKCYLRPMRYHVGGTLEAGFL----ALRRGWSI 238
+ S PL+ + V R VGGTL A A R ++
Sbjct: 74 AVGSGTASLSGPLLERLFGLGDADNPVFAGMHEAARLLVGGTLAAAQTVASGAATR--AV 131
Query: 239 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNET 298
NIGGG HHA + + GFC Y D ++ ++ L K +D+DAH G+G + +F +
Sbjct: 132 NIGGGMHHAMKARAAGFCIYNDCAIAIRYLLD-KGFDRIAYIDVDAHHGDGVQVEFAADP 190
Query: 299 RIFIME---------------TCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
R+ + T + + + L P TED+ +L A + +
Sbjct: 191 RVMTVSLHQHPATLWPGTGWPTEVGDGDAQGSAVNLALMPNTEDRLWLRAFHAVVPSLVA 250
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMK 384
F P IIV G D DPL L+++ +G +R ++ M+
Sbjct: 251 EFKPQIIVSQCGADSHRADPLTDLSLTVEG--QRAAMIAMR 289
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++NIGGG HHA + + GFC Y D ++ ++ L K +D+DAH
Sbjct: 130 AVNIGGGMHHAMKARAAGFCIYNDCAIAIRYLLD-KGFDRIAYIDVDAHH 178
>gi|304404101|ref|ZP_07385763.1| Histone deacetylase [Paenibacillus curdlanolyticus YK9]
gi|304347079|gb|EFM12911.1| Histone deacetylase [Paenibacillus curdlanolyticus YK9]
Length = 393
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 115/273 (42%), Gaps = 39/273 (14%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ + HPFD + + L + + + +II P +E +L H Y+
Sbjct: 17 YRFNEHHPFDPTRLITTTDLL--------IRSDALQGTDIIVPTPADDELILSIHRPDYV 68
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFV--QKCYLRPMRYH----VGGTLEAG-----FLAL 232
+++K + A SE A F Y M VGG++ A LA
Sbjct: 69 QAVK-ELSEATPSEASVAAAAKYGFTTDDTPYFEGMHQASAAIVGGSVHAAETVMSGLAT 127
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
R + ++ GG HHA +G GFC Y D ++ ++ + +SK S + +D D H G+G +
Sbjct: 128 R---AFHMAGGLHHAFPDRGTGFCIYNDAAIAIEHI-RSKYGSRILYIDTDVHHGDGVQW 183
Query: 293 DFMNETRIFIMETCITSK---------------AKEAIRCRIELAPYTEDQHYLEKIEAG 337
F + +F T K A + L PYTED+ +LE +A
Sbjct: 184 TFYSNEHVFTYSIHETGKFLFPGTGFVHERGVDAGIGACMNVPLEPYTEDESWLECFQAT 243
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAIS 370
+E + R F PD+IV G D DPL + S
Sbjct: 244 VEEAARMFQPDLIVSQHGCDAHAYDPLSHMHCS 276
Score = 38.1 bits (87), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+ ++ GG HHA +G GFC Y D ++ ++ + +SK S + +D D H
Sbjct: 129 AFHMAGGLHHAFPDRGTGFCIYNDAAIAIEHI-RSKYGSRILYIDTDVHH 177
>gi|379021512|ref|YP_005298174.1| NAD-independent protein deacetylase AcuC [Staphylococcus aureus
subsp. aureus M013]
gi|417899283|ref|ZP_12543190.1| histone deacetylase family [Staphylococcus aureus subsp. aureus
21259]
gi|341846087|gb|EGS87285.1| histone deacetylase family [Staphylococcus aureus subsp. aureus
21259]
gi|359830821|gb|AEV78799.1| NAD-independent protein deacetylase AcuC [Staphylococcus aureus
subsp. aureus M013]
Length = 375
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ ++++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATDDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADTYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>gi|384547954|ref|YP_005737207.1| acetoin utilization protein [Staphylococcus aureus subsp. aureus
ED133]
gi|298695003|gb|ADI98225.1| acetoin utilization protein [Staphylococcus aureus subsp. aureus
ED133]
Length = 389
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ ++++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATDDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTNYSIHETGKFLFPGSGHYTERGEDIGYGHTINVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADTYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>gi|416839583|ref|ZP_11902964.1| acetoin utilization protein [Staphylococcus aureus O11]
gi|323440721|gb|EGA98430.1| acetoin utilization protein [Staphylococcus aureus O11]
Length = 389
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ ++++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATDDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTINVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADTYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>gi|417897377|ref|ZP_12541313.1| histone deacetylase family [Staphylococcus aureus subsp. aureus
21235]
gi|341839723|gb|EGS81288.1| histone deacetylase family [Staphylococcus aureus subsp. aureus
21235]
Length = 388
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ ++++L++ H Y+
Sbjct: 18 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATDDELMLIHKYDYV 69
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 70 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 126
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 127 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 185
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 186 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTINVPLEPYTEDASFLECFKLTVEPV 245
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 246 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADTYTNGKVIMFGGGGY 305
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 129 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 175
>gi|417903139|ref|ZP_12546994.1| histone deacetylase family [Staphylococcus aureus subsp. aureus
21269]
gi|341850313|gb|EGS91437.1| histone deacetylase family [Staphylococcus aureus subsp. aureus
21269]
Length = 389
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ ++++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATDDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTINVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADTYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>gi|335040248|ref|ZP_08533380.1| histone deacetylase superfamily [Caldalkalibacillus thermarum
TA2.A1]
gi|334179819|gb|EGL82452.1| histone deacetylase superfamily [Caldalkalibacillus thermarum
TA2.A1]
Length = 397
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 128/292 (43%), Gaps = 42/292 (14%)
Query: 122 HFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEA-KFITQDNIIEPQEVSEEQLLIAHTE 180
+FF E HPF+ K+ + L+E F+T D + P+ ++E+LL+ H
Sbjct: 19 YFFHDE--HPFNQKRIA---------LTKQLLECCGFLTPDQVRAPRLATDEELLLVHDR 67
Query: 181 KYLKSLKWSFNVAAISEVCPLVAVPNYF-----VQKCYLRPMRYH-----VGGTLEAGFL 230
+Y++++K + V+ S P P + + L P + VGGTL L
Sbjct: 68 EYIEAVKKASQVSGQSS--PGQEHPEFHPFGLGTEDTPLFPDMHRQAVLAVGGTLLGAEL 125
Query: 231 AL--RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
R +N+ GG HHA K GFC Y D ++ ++ + + + + +D DAH G+
Sbjct: 126 IAQGRTKRVLNLAGGLHHAQRGKASGFCIYNDCAVAIEYVRKQYDMKV-LYIDTDAHHGD 184
Query: 289 GYEKDFMNETRIFIMETCITSK--------------AKEAIRC-RIELAPYTEDQHYLEK 333
G + F ++ +F T + + C + + +T+D +L+
Sbjct: 185 GVQWIFYHDPHVFTFSIHETGRYLYPGTGHVNEKGIGEGYGYCLNLPVDAFTQDASWLDC 244
Query: 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKA 385
E GLE L+ F PDII+ G D DPL LA S R EL+ A
Sbjct: 245 FERGLEAVLQFFKPDIIISQHGCDAHFYDPLTHLAGSMSIYARMPELIKQAA 296
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 19 INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+N+ GG HHA K GFC Y D ++ ++ + + + + +D DAH
Sbjct: 135 LNLAGGLHHAQRGKASGFCIYNDCAVAIEYVRKQYDMKV-LYIDTDAHH 182
>gi|314933887|ref|ZP_07841252.1| acetoin utilization protein AcuC [Staphylococcus caprae C87]
gi|313654037|gb|EFS17794.1| acetoin utilization protein AcuC [Staphylococcus caprae C87]
Length = 390
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 132/301 (43%), Gaps = 37/301 (12%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L +A F+ ++I+ P+ ++E+L + H Y+
Sbjct: 19 YRFSNEHPFNQMRLKLTTELL--------KDANFLKDEHIVIPRIATDEELALIHQYDYI 70
Query: 184 KSLKW-SFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSI 238
++++ S + + E + +Q + M H VGG L + G I
Sbjct: 71 QAIRHASHGILSEHEAKKYGLNGDDTLQ---FKHMHRHSARIVGGALNL-VDCIMDGTFI 126
Query: 239 N---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFM 295
N +GGG HHA + GFC Y D+++ K L + K M++D DAH G+G + F
Sbjct: 127 NGCHLGGGLHHALPGRANGFCIYNDVAITAKYLVE-KYHQRVMVIDTDAHHGDGTQWSFY 185
Query: 296 NETRIF---IMETC---------ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLER 340
+ RI I ET T + ++ + L PYTED YLE + +E
Sbjct: 186 TDNRIMTYSIHETGKFLFPGSGHYTERGEDIGYGYTVNVPLEPYTEDASYLEVFKETVEP 245
Query: 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVF-MKARERRVPIVMLTSGG 399
+ +F PDII+ G D+ DPL + + + ++ + R ++M GG
Sbjct: 246 LVAAFKPDIILSVHGLDIHYRDPLTHMNCTLNSLYSIPYIIQDLAKRYCNHKVLMFGGGG 305
Query: 400 Y 400
Y
Sbjct: 306 Y 306
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y D+++ K L + K M++D DAH
Sbjct: 130 HLGGGLHHALPGRANGFCIYNDVAITAKYLVE-KYHQRVMVIDTDAHH 176
>gi|152977032|ref|YP_001376549.1| histone deacetylase superfamily protein [Bacillus cytotoxicus NVH
391-98]
gi|152025784|gb|ABS23554.1| histone deacetylase superfamily [Bacillus cytotoxicus NVH 391-98]
Length = 388
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 115/255 (45%), Gaps = 37/255 (14%)
Query: 138 KHIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLK--------- 187
+H FN L + ++ LV++ F++ +I P+ ++E++ + HTE Y+ ++K
Sbjct: 19 EHPFNQLRVTLTYDLLVKSGFLSPSQVIPPRMATDEEIALIHTEDYINAVKRAGEGHLEQ 78
Query: 188 -WSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGF 244
+ +E P+ P+ L VGGTL A ++ + ++N+GGG
Sbjct: 79 SIAMTYGLGTEDTPMF--PHMHEASALL------VGGTLTAVDAVMSGKATCALNLGGGL 130
Query: 245 HHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIME 304
HH K GFC Y D S+ +K L Q + + +D DAH G+G + F ++ + +
Sbjct: 131 HHGFRGKASGFCIYNDSSIAIKYLQQKYGLRV-LYIDTDAHHGDGVQWSFYDDPNVCTIS 189
Query: 305 TCITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDI 349
T + A+ R + L +TED+ +L+ ++ F PDI
Sbjct: 190 LHETGRYLFPGTGAVNERGQGVGYSYSFNVPLDAFTEDESFLQSYRTVVKEVAAYFKPDI 249
Query: 350 IVYNAGTDVLLNDPL 364
IV G D DPL
Sbjct: 250 IVTQNGADAHYYDPL 264
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A ++ + ++N+GGG HH K GFC Y D S+ +K L Q + + +
Sbjct: 107 GTLTAVDAVMSGKATCALNLGGGLHHGFRGKASGFCIYNDSSIAIKYLQQKYGLRV-LYI 165
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 166 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 197
>gi|423484238|ref|ZP_17460928.1| hypothetical protein IEQ_04016 [Bacillus cereus BAG6X1-2]
gi|401139264|gb|EJQ46827.1| hypothetical protein IEQ_04016 [Bacillus cereus BAG6X1-2]
Length = 397
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 114/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L ++ FI+ +I P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKSGFISPSQVISPRMATDEEIAYIHTEEYINAVKLAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +LE ++ + F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLESYRTVVKEAAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|416846223|ref|ZP_11906445.1| acetoin utilization protein [Staphylococcus aureus O46]
gi|323442960|gb|EGB00582.1| acetoin utilization protein [Staphylococcus aureus O46]
Length = 389
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ ++++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATDDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QLVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTINVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADTYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QLVLIIDTDAHH 176
>gi|196040911|ref|ZP_03108209.1| acetoin utilization protein AcuC [Bacillus cereus NVH0597-99]
gi|196028365|gb|EDX66974.1| acetoin utilization protein AcuC [Bacillus cereus NVH0597-99]
Length = 388
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II PQ ++E++ HTE+Y+ ++K +
Sbjct: 20 HPFNQLRVTLTYDLLQKGGFISPSQIISPQMATDEEIAYVHTEEYINAVKRAGEGKLEKS 79
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 80 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 131
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 132 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 190
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 191 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLDSYRTVVKEVAAYFKPDII 250
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 251 LTQNGADAHYYDPL 264
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 107 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 165
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 166 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 197
>gi|357012364|ref|ZP_09077363.1| acetoin utilization protein AcuC [Paenibacillus elgii B69]
Length = 392
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 125/308 (40%), Gaps = 48/308 (15%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
+K HPF+ ++ + L K AK ++ D++I P E QL H+++Y+
Sbjct: 16 YKFNDSHPFNQQRLVLTVDLLRK--------AKALSGDSLIRPMPADETQLCSVHSQEYV 67
Query: 184 KSLK----------WSFNVAAI---SEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--G 228
++K W +E P P +L VGG++ A
Sbjct: 68 NAVKALSADQPTEEWLHQAGKYGLDTEDTPFF--PGMHQATSFL------VGGSIRAVDA 119
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
L G ++++GGG HHA KG GFC Y D ++ + +SK + +D D H G+
Sbjct: 120 VLGGEAGHALHLGGGLHHAMPHKGAGFCVYNDAAVAIAHA-KSKYGVRVLYIDTDVHHGD 178
Query: 289 GYEKDFMNETRIFIMETCITSK----AKEAIRCR-----------IELAPYTEDQHYLEK 333
G + F + T K A+ R + + P+TED+ +LE
Sbjct: 179 GVQWSFYTDPDTCTFSIHETGKYLFPGTGAVNERGDGTGFGTTINVPMEPFTEDESWLEC 238
Query: 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER-RVPI 392
E L ++ F PD+IV G D DPL + S + ++ A E +
Sbjct: 239 FEEVLVKTAAQFKPDLIVSQHGCDAHAYDPLAHIHCSMEIYRAMPRIIHRLAHEHCQGRW 298
Query: 393 VMLTSGGY 400
V L GGY
Sbjct: 299 VALGGGGY 306
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 11 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
L G ++++GGG HHA KG GFC Y D ++ + +SK + +D D H
Sbjct: 121 LGGEAGHALHLGGGLHHAMPHKGAGFCVYNDAAVAIAHA-KSKYGVRVLYIDTDVHH 176
>gi|441513647|ref|ZP_20995475.1| putative deacetylase [Gordonia amicalis NBRC 100051]
gi|441451593|dbj|GAC53436.1| putative deacetylase [Gordonia amicalis NBRC 100051]
Length = 418
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 118/281 (41%), Gaps = 34/281 (12%)
Query: 132 FDSKKWKHI--FNYLWKHIFNYLVEAKFITQD-NIIEPQEVSEEQLLIAHTEKYLKSLKW 188
F S +W H N + + L ++ + D + PQ + ++ L + HT Y+ +++
Sbjct: 15 FLSYRWAHTHPMNPVRLALTMTLAQSLGVLDDVETVPPQAIDDDALTVVHTRDYIDAVR- 73
Query: 189 SFNVAAISEVCPLV------AVPNYFVQKCYLRPMRYHVGGTLEAGFL----ALRRGWSI 238
+ S PL+ + V R VGGTL A A R ++
Sbjct: 74 AVGSGTASLSGPLLERLFGLGDADNPVFAGMHEAARLLVGGTLAAAQTVASGAATR--AV 131
Query: 239 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNET 298
NIGGG HHA + GFC Y D ++ ++ L K +D+DAH G+G + +F +
Sbjct: 132 NIGGGMHHAMRARAAGFCIYNDCAIAIRYLLD-KGFDRIAYIDVDAHHGDGVQVEFAADP 190
Query: 299 RIFIME---------------TCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
R+ + T + + + L P TED+ +L A + +
Sbjct: 191 RVMTVSLHQHPATLWPGTGWPTEVGDGDAQGSAVNLALMPNTEDRLWLRAFHAVVPSLIA 250
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMK 384
F P IIV G D DPL L+++ G +R ++ M+
Sbjct: 251 EFKPQIIVSQCGADSHRADPLTDLSLTVDG--QRAAMIAMR 289
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++NIGGG HHA + GFC Y D ++ ++ L K +D+DAH
Sbjct: 130 AVNIGGGMHHAMRARAAGFCIYNDCAIAIRYLLD-KGFDRIAYIDVDAHH 178
>gi|417901174|ref|ZP_12545051.1| histone deacetylase family [Staphylococcus aureus subsp. aureus
21266]
gi|341846333|gb|EGS87530.1| histone deacetylase family [Staphylococcus aureus subsp. aureus
21266]
Length = 346
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 125/272 (45%), Gaps = 27/272 (9%)
Query: 152 LVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQK 211
L+ A ++ + I++P+ ++++L++ H Y++++K + + + + + +
Sbjct: 10 LLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASHGIISEDEAKKYGLND--EEN 67
Query: 212 CYLRPMRYH----VGGTLEAGFLALRRGWSIN---IGGGFHHASETKGGGFCAYADISLL 264
+ M H VGG L L + G +N +GGG HHA + GFC Y DI++
Sbjct: 68 GQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGRASGFCIYNDIAIT 126
Query: 265 VKLLFQSKSISTAMIVDLDAHQGNGYEKDF----------MNETRIFIMETC--ITSKAK 312
+ L + + +I+D DAH G+G + F ++ET F+ T + +
Sbjct: 127 AQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKFLFPGSGHYTERGE 185
Query: 313 E---AIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAI 369
+ + L PYTED +LE + +E ++SF PDII+ G D+ DPL L
Sbjct: 186 DIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSVNGVDIHYRDPLTHLNC 245
Query: 370 SPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
+ + V ++ ++M GGY
Sbjct: 246 TLHSLYEIPYFVKYLADTYTNGKVIMFGGGGY 277
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 101 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 147
>gi|423584808|ref|ZP_17560895.1| hypothetical protein IIE_00220 [Bacillus cereus VD045]
gi|423631383|ref|ZP_17607130.1| hypothetical protein IK5_04233 [Bacillus cereus VD154]
gi|401235000|gb|EJR41473.1| hypothetical protein IIE_00220 [Bacillus cereus VD045]
gi|401263956|gb|EJR70072.1| hypothetical protein IK5_04233 [Bacillus cereus VD154]
Length = 397
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYVHTEEYINAVKRAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +LE ++ F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLESYRTVVKEVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|423411542|ref|ZP_17388662.1| hypothetical protein IE1_00846 [Bacillus cereus BAG3O-2]
gi|423432671|ref|ZP_17409675.1| hypothetical protein IE7_04487 [Bacillus cereus BAG4O-1]
gi|401104867|gb|EJQ12835.1| hypothetical protein IE1_00846 [Bacillus cereus BAG3O-2]
gi|401115804|gb|EJQ23651.1| hypothetical protein IE7_04487 [Bacillus cereus BAG4O-1]
Length = 397
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYVHTEEYINAVKRAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +LE ++ F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLESYRTVVKEVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|365158548|ref|ZP_09354740.1| hypothetical protein HMPREF1014_00203 [Bacillus sp. 7_6_55CFAA_CT2]
gi|423438101|ref|ZP_17415082.1| hypothetical protein IE9_04282 [Bacillus cereus BAG4X12-1]
gi|363626421|gb|EHL77404.1| hypothetical protein HMPREF1014_00203 [Bacillus sp. 7_6_55CFAA_CT2]
gi|401119714|gb|EJQ27525.1| hypothetical protein IE9_04282 [Bacillus cereus BAG4X12-1]
Length = 397
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYVHTEEYINAVKRAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +LE ++ F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLESYRTVVKEVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|423377489|ref|ZP_17354773.1| hypothetical protein IC9_00842 [Bacillus cereus BAG1O-2]
gi|401638338|gb|EJS56088.1| hypothetical protein IC9_00842 [Bacillus cereus BAG1O-2]
Length = 397
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYVHTEEYINAVKCAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +LE ++ F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLESYRTVVKEVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|239918281|ref|YP_002957839.1| deacetylase, histone deacetylase/acetoin utilization protein
[Micrococcus luteus NCTC 2665]
gi|281415525|ref|ZP_06247267.1| deacetylase, histone deacetylase/acetoin utilization protein
[Micrococcus luteus NCTC 2665]
gi|239839488|gb|ACS31285.1| deacetylase, histone deacetylase/acetoin utilization protein
[Micrococcus luteus NCTC 2665]
Length = 417
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 106/240 (44%), Gaps = 42/240 (17%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAI--------SEVCPLVAVPNYFVQKCYL 214
I+EP ++EQL + H +Y+ +++ + ++ +E CP+ P+ +
Sbjct: 57 IVEPPVATDEQLALVHDPEYVAAVRRAAETSSAEDGRFGLGTEDCPVF--PDLHESAARI 114
Query: 215 RPMRYHVGGTLEAGFLALRRGWS------INIGGGFHHASETKGGGFCAYADISLLVKLL 268
GG+L +A WS +N GG HHA+ + GFC Y D ++ ++ L
Sbjct: 115 ------AGGSL----VAAEAIWSGEVDRAVNFAGGMHHAARSSASGFCIYNDCAVAIQRL 164
Query: 269 FQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIM---ETCIT------------SKAKE 313
+ A VD+DAH G+G + F ++ R+ + ET I+ A +
Sbjct: 165 LDLGAERVAY-VDVDAHHGDGTQSIFYDDPRVLTISLHETGISLFPGTGFANEIGGSAAQ 223
Query: 314 AIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQG 373
+ L P T D +L A + L +F PD++V G D L DPL L ++ G
Sbjct: 224 GTAVNVALPPRTGDAGFLRAAHAVVPPLLEAFAPDVLVSQHGCDGHLTDPLADLRLTVDG 283
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++N GG HHA+ + GFC Y D ++ ++ L + A VD+DAH
Sbjct: 133 AVNFAGGMHHAARSSASGFCIYNDCAVAIQRLLDLGAERVAY-VDVDAHH 181
>gi|418455153|ref|ZP_13026410.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus VRS11a]
gi|418458029|ref|ZP_13029227.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus VRS11b]
gi|387744083|gb|EIK30855.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus VRS11a]
gi|387746150|gb|EIK32884.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus VRS11b]
Length = 389
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 132/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ + ++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATGDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLEYFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>gi|449091626|ref|YP_007424067.1| hypothetical protein HD73_4968 [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|449025383|gb|AGE80546.1| hypothetical protein HD73_4968 [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 388
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 111/254 (43%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 20 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYVHTEEYINAVKRAGEGKLEKS 79
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 80 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 131
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 132 HGFRGKASGFCIYNDSSIAIKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 190
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +LE + F PDII
Sbjct: 191 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLESYRTVVTEVAAYFKPDII 250
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 251 LTQNGADAHYYDPL 264
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 107 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAIKYI-QKKYGLRVLYI 165
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 166 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 197
>gi|410677064|ref|YP_006929435.1| acetoin utilization protein AcuB [Bacillus thuringiensis Bt407]
gi|409176193|gb|AFV20498.1| acetoin utilization protein AcuB [Bacillus thuringiensis Bt407]
Length = 397
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYVHTEEYINAVKRAGEGNLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +LE ++ F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLESYRTVVKEVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|423582877|ref|ZP_17558988.1| hypothetical protein IIA_04392 [Bacillus cereus VD014]
gi|401211692|gb|EJR18439.1| hypothetical protein IIA_04392 [Bacillus cereus VD014]
Length = 397
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYVHTEEYINAVKRAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTVSL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +LE ++ F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLESYRTVVKEVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ ++ +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTVSLHETGRYL 206
>gi|423426796|ref|ZP_17403827.1| hypothetical protein IE5_04485 [Bacillus cereus BAG3X2-2]
gi|423502653|ref|ZP_17479245.1| hypothetical protein IG1_00219 [Bacillus cereus HD73]
gi|401110362|gb|EJQ18271.1| hypothetical protein IE5_04485 [Bacillus cereus BAG3X2-2]
gi|402459892|gb|EJV91620.1| hypothetical protein IG1_00219 [Bacillus cereus HD73]
Length = 397
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 111/254 (43%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYVHTEEYINAVKRAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAIKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +LE + F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLESYRTVVTEVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAIKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|383758207|ref|YP_005437192.1| hypothetical protein RGE_23520 [Rubrivivax gelatinosus IL144]
gi|381378876|dbj|BAL95693.1| hypothetical protein RGE_23520 [Rubrivivax gelatinosus IL144]
Length = 314
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 88/181 (48%), Gaps = 10/181 (5%)
Query: 235 GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-----KSISTAMIVDLDAHQGNG 289
G + N+ GG HHA KG G+C + D+++ +L+ ++ ++VDLD HQGNG
Sbjct: 108 GVAANLAGGTHHAYAHKGSGYCVFNDVAVAARLMQAEWHRMHRAGLQVLVVDLDVHQGNG 167
Query: 290 YEKDFMNETRIFIMETCITSK---AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
F ++ +F + KEA +EL D YL ++A L + R
Sbjct: 168 TASIFRDDASVFTLSLHGAKNFPFRKEASDLDVELPDGCADAEYLAALDAALAEAWRRLP 227
Query: 347 --PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT 404
P + Y AG D D LG L +S +G+ RD VF RRVP+V+ +GGY +
Sbjct: 228 TPPGLAFYLAGADPHEGDRLGRLKLSAEGLAERDRRVFAALAARRVPVVVTMAGGYGRDI 287
Query: 405 A 405
A
Sbjct: 288 A 288
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 16 GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-----KSISTAMIVDLDAHQ 67
G + N+ GG HHA KG G+C + D+++ +L+ ++ ++VDLD HQ
Sbjct: 108 GVAANLAGGTHHAYAHKGSGYCVFNDVAVAARLMQAEWHRMHRAGLQVLVVDLDVHQ 164
>gi|377567677|ref|ZP_09796885.1| putative acetoin utilization protein [Gordonia terrae NBRC 100016]
gi|377535217|dbj|GAB42050.1| putative acetoin utilization protein [Gordonia terrae NBRC 100016]
Length = 414
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 118/279 (42%), Gaps = 30/279 (10%)
Query: 132 FDSKKWKHI--FNYLWKHIFNYLVEAKFITQD-NIIEPQEVSEEQLLIAHTEKYLKSLKW 188
F S +W H N + + L ++ + D + PQ + ++ L + H+ Y+ +++
Sbjct: 11 FLSYRWAHTHPMNPVRLALTMTLAQSLGVLDDVETVPPQAIDDDALTVVHSRDYIDAVR- 69
Query: 189 SFNVAAISEVCPLV------AVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWS--INI 240
+ S PL+ + V R VGGTL A + + +NI
Sbjct: 70 AVGSGTASLSGPLLERLFGLGDADNPVFTGMHEAARLLVGGTLAAAQTVVSGAATRAVNI 129
Query: 241 GGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRI 300
GGG HHA ++ GFC Y D ++ +K L + A I D+DAH G+G + +F + R+
Sbjct: 130 GGGMHHAMRSRAAGFCIYNDCAIAIKYLLDNGFDRIAYI-DVDAHHGDGVQVEFATDPRV 188
Query: 301 FIME---------------TCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
+ T + + L P TED+ +L A + + F
Sbjct: 189 MTVSLHQHPATLWPGTGWPTEVGDGDAAGSAVNLALMPNTEDRLWLRAFHAVVPSLIAEF 248
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMK 384
P IIV G D DPL L+++ G +R ++ M+
Sbjct: 249 RPQIIVSQCGADSHRADPLTDLSLTVDG--QRAAMIAMR 285
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++NIGGG HHA ++ GFC Y D ++ +K L + A I D+DAH
Sbjct: 126 AVNIGGGMHHAMRSRAAGFCIYNDCAIAIKYLLDNGFDRIAYI-DVDAHH 174
>gi|188997126|ref|YP_001931377.1| histone deacetylase superfamily protein [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932193|gb|ACD66823.1| histone deacetylase superfamily [Sulfurihydrogenibium sp. YO3AOP1]
Length = 306
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 120/273 (43%), Gaps = 36/273 (13%)
Query: 164 IEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCY------LRPM 217
++P+ S +++ + H Y + + F A + P V Y + L +
Sbjct: 45 LKPRRASAKEITLIHDIYYPQEI-MDFCAAGGGYLDPDTHVGEYSYEAAVMAVGAGLEAI 103
Query: 218 RYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
V G +E F A+R HHA + K GFC + +I++ + + Q K +
Sbjct: 104 DNIVNGKIERAFCAVRPPG--------HHAEKDKAMGFCIFNNIAITARYV-QQKGFNKV 154
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMET-------CITSKAKEAI------RCRIELAPY 324
I+D DAH GNG +K F ++ +F T SK ++ + + L
Sbjct: 155 FIIDFDAHHGNGTQKAFYDDDTVFYFSTHEYPFYPGTGSKNEKGVGKGYGYTYNVPLPAG 214
Query: 325 TEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMK 384
T D+ Y E L ++SF PDII+ +AG D+ +DPL L +S +GI E +
Sbjct: 215 TGDEVYTEIYSQTLPELVKSFNPDIILVSAGYDLHQDDPLTYLEVSTEGIGTIVENILKS 274
Query: 385 ARERRVPIVMLTSGGY----LKQTARIIADSIL 413
A VP V + GGY L ++ R+ + +L
Sbjct: 275 A---DVPYVFMLEGGYNLNALGESVRLTIEKML 304
>gi|343926978|ref|ZP_08766466.1| putative acetoin utilization protein [Gordonia alkanivorans NBRC
16433]
gi|343763036|dbj|GAA13392.1| putative acetoin utilization protein [Gordonia alkanivorans NBRC
16433]
Length = 418
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 119/281 (42%), Gaps = 34/281 (12%)
Query: 132 FDSKKWKHI--FNYLWKHIFNYLVEAKFITQD-NIIEPQEVSEEQLLIAHTEKYLKSLKW 188
F S +W H N + + L ++ + D + PQ + ++ L HT Y+ +++
Sbjct: 15 FLSYRWAHTHPMNPVRLALTMTLAQSLGVLDDVETVPPQAIDDDALTAVHTRDYIDAVR- 73
Query: 189 SFNVAAISEVCPLV------AVPNYFVQKCYLRPMRYHVGGTLEAGFL----ALRRGWSI 238
+ S PL+ + V R VGGTL A A R ++
Sbjct: 74 AVGSGTASLSGPLLERLFGLGDADNPVFAGMHEAARLLVGGTLAAAQTVASGAATR--AV 131
Query: 239 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNET 298
NIGGG HHA + + GFC Y D ++ ++ L K +D+DAH G+G + +F +
Sbjct: 132 NIGGGMHHAMKARAAGFCIYNDCAIAIRYLLD-KGFDRIAYIDVDAHHGDGVQVEFAADP 190
Query: 299 RIFIME---------------TCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
R+ + T + + + L P TED+ +L A + +
Sbjct: 191 RVMTVSLHQHPATLWPGTGWPTEVGDGDAQGSAVNLALMPNTEDRLWLRAFHAVVPSLIA 250
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMK 384
F P IIV G D DPL L+++ +G +R ++ M+
Sbjct: 251 GFKPQIIVSQCGADSHRADPLTDLSLTVEG--QRAAMIAMR 289
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++NIGGG HHA + + GFC Y D ++ ++ L K +D+DAH
Sbjct: 130 AVNIGGGMHHAMKARAAGFCIYNDCAIAIRYLLD-KGFDRIAYIDVDAHH 178
>gi|423634442|ref|ZP_17610095.1| hypothetical protein IK7_00851 [Bacillus cereus VD156]
gi|401280421|gb|EJR86341.1| hypothetical protein IK7_00851 [Bacillus cereus VD156]
Length = 397
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYVHTEEYINAVKRAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +LE ++ F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLESYRTVVKEVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|302839673|ref|XP_002951393.1| hypothetical protein VOLCADRAFT_91828 [Volvox carteri f.
nagariensis]
gi|300263368|gb|EFJ47569.1| hypothetical protein VOLCADRAFT_91828 [Volvox carteri f.
nagariensis]
Length = 505
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 24/224 (10%)
Query: 222 GGTLEAGFLALRRGWSI---NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAM 278
GGT+ A + +++G SI NI GG HHA + + L ++ + +
Sbjct: 236 GGTVAAMHVVMQQGGSIIAGNIAGGTHHAFRDR------------VESLFLCILTLDSIL 283
Query: 279 IVDLDAHQGNGYEKDFMNETRIFIMETCITS----KAKEAIRCRIELAPYTEDQHYLEKI 334
+VDLD HQGNG F ++ R+ + K + I L T D+ Y+ +
Sbjct: 284 VVDLDVHQGNGTADIFQDDPRVTTFDIFGDKNYPWKTRRKNTYDIPLLDDTGDEQYVALL 343
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394
+ L + +R P +I++ AG D L D G L ++ G++ R+ LV+ A E VP+V+
Sbjct: 344 RSWLPKLMREHRPQLIMFQAGVDALRGDSFGRLGMTRSGLLARNNLVYGTALEAGVPLVI 403
Query: 395 LTSGGY---LKQTARIIADSILNLADL--GLISRPYNIWFIYYT 433
GGY + + ++ S L L+ RP + W + T
Sbjct: 404 TMGGGYTRPMDASVHVLVHSPLGGGVFWEALLRRPPHCWGCWAT 447
>gi|452201140|ref|YP_007481221.1| NAD-independent protein deacetylase AcuC [Bacillus thuringiensis
serovar thuringiensis str. IS5056]
gi|452106533|gb|AGG03473.1| NAD-independent protein deacetylase AcuC [Bacillus thuringiensis
serovar thuringiensis str. IS5056]
Length = 388
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 20 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYVHTEEYINAVKRAGEGNLEKS 79
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 80 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 131
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 132 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 190
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +LE ++ F PDII
Sbjct: 191 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLESYRTVVKEVAAYFKPDII 250
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 251 LTQNGADAHYYDPL 264
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 107 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 165
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 166 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 197
>gi|423386180|ref|ZP_17363436.1| hypothetical protein ICE_03926 [Bacillus cereus BAG1X1-2]
gi|423527484|ref|ZP_17503929.1| hypothetical protein IGE_01036 [Bacillus cereus HuB1-1]
gi|401634831|gb|EJS52594.1| hypothetical protein ICE_03926 [Bacillus cereus BAG1X1-2]
gi|402452853|gb|EJV84663.1| hypothetical protein IGE_01036 [Bacillus cereus HuB1-1]
Length = 397
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKGGFISPSQIITPRMATDEEIAYVHTEEYINAVKRAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +LE ++ F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLESYRTVVKEVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|417894330|ref|ZP_12538349.1| histone deacetylase family, partial [Staphylococcus aureus subsp.
aureus 21201]
gi|341852475|gb|EGS93364.1| histone deacetylase family [Staphylococcus aureus subsp. aureus
21201]
Length = 363
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 132/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ + ++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATGDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>gi|423614938|ref|ZP_17590772.1| hypothetical protein IIO_00264 [Bacillus cereus VD115]
gi|401261794|gb|EJR67945.1| hypothetical protein IIO_00264 [Bacillus cereus VD115]
Length = 397
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 116/257 (45%), Gaps = 41/257 (15%)
Query: 138 KHIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL------------K 184
+H FN L + ++ L ++ FI+ +I P+ ++E++ HTE+Y+ K
Sbjct: 28 EHPFNQLRVTLTYDLLQKSGFISPSQVISPRMATDEEIAYVHTEEYIHAVKRAGEGKLEK 87
Query: 185 SLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGG 242
S+ ++ + +E P+ PN L VGGTL A L+ + ++N+GG
Sbjct: 88 SIAMTYGLG--TEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGG 137
Query: 243 GFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFI 302
G HH K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ +
Sbjct: 138 GLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCT 196
Query: 303 METCITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCP 347
+ T + A+ R + L +TED+ +LE ++ F P
Sbjct: 197 ISLHETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLESYRTVVKEVAAYFKP 256
Query: 348 DIIVYNAGTDVLLNDPL 364
DII+ G D DPL
Sbjct: 257 DIILTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|423440595|ref|ZP_17417501.1| hypothetical protein IEA_00925 [Bacillus cereus BAG4X2-1]
gi|423449256|ref|ZP_17426135.1| hypothetical protein IEC_03864 [Bacillus cereus BAG5O-1]
gi|423463659|ref|ZP_17440427.1| hypothetical protein IEK_00846 [Bacillus cereus BAG6O-1]
gi|423533012|ref|ZP_17509430.1| hypothetical protein IGI_00844 [Bacillus cereus HuB2-9]
gi|423541725|ref|ZP_17518116.1| hypothetical protein IGK_03817 [Bacillus cereus HuB4-10]
gi|423622255|ref|ZP_17598033.1| hypothetical protein IK3_00853 [Bacillus cereus VD148]
gi|401128705|gb|EJQ36394.1| hypothetical protein IEC_03864 [Bacillus cereus BAG5O-1]
gi|401171258|gb|EJQ78491.1| hypothetical protein IGK_03817 [Bacillus cereus HuB4-10]
gi|401261395|gb|EJR67555.1| hypothetical protein IK3_00853 [Bacillus cereus VD148]
gi|402418726|gb|EJV51015.1| hypothetical protein IEA_00925 [Bacillus cereus BAG4X2-1]
gi|402421203|gb|EJV53463.1| hypothetical protein IEK_00846 [Bacillus cereus BAG6O-1]
gi|402464392|gb|EJV96087.1| hypothetical protein IGI_00844 [Bacillus cereus HuB2-9]
Length = 397
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 114/256 (44%), Gaps = 41/256 (16%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL------------KS 185
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ KS
Sbjct: 29 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYVHTEEYIHAVKRAGEGKLEKS 88
Query: 186 LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGG 243
+ ++ + +E P+ PN L VGGTL A L+ + ++N+GGG
Sbjct: 89 IAMTYGLG--TEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGG 138
Query: 244 FHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIM 303
HH K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 139 LHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTI 197
Query: 304 ETCITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
T + A+ R + L +TED+ +LE ++ F PD
Sbjct: 198 SLHETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLESYRTVVKEVAAYFKPD 257
Query: 349 IIVYNAGTDVLLNDPL 364
II+ G D DPL
Sbjct: 258 IILTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|418950362|ref|ZP_13502539.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-160]
gi|375377037|gb|EHS80531.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-160]
Length = 389
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ ++++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATDDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHLLYEIPYFVKYLADTYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>gi|30022737|ref|NP_834368.1| acetoin utilization protein AcuC [Bacillus cereus ATCC 14579]
gi|423640267|ref|ZP_17615885.1| hypothetical protein IK9_00212 [Bacillus cereus VD166]
gi|29898296|gb|AAP11569.1| Acetoin utilization acuC protein [Bacillus cereus ATCC 14579]
gi|401281183|gb|EJR87096.1| hypothetical protein IK9_00212 [Bacillus cereus VD166]
Length = 397
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 114/256 (44%), Gaps = 41/256 (16%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL------------KS 185
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ KS
Sbjct: 29 HPFNQLRVTLTYDLLQKGGFISPSQIISPRTATDEEIAYVHTEEYINAVKRAGEGKLEKS 88
Query: 186 LKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGG 243
+ S+ + +E P+ PN L VGGTL A L+ + ++N+GGG
Sbjct: 89 IAMSYGLG--TEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGG 138
Query: 244 FHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIM 303
HH K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 139 LHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTI 197
Query: 304 ETCITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPD 348
T + A+ R + L +TED+ +L+ ++ F PD
Sbjct: 198 SLHETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLKSYRTVVKEVAAYFKPD 257
Query: 349 IIVYNAGTDVLLNDPL 364
II+ G D DPL
Sbjct: 258 IILTQNGADAHYYDPL 273
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|417801016|ref|ZP_12448117.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21318]
gi|334277340|gb|EGL95571.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21318]
Length = 389
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 132/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ + ++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATGDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>gi|407797142|ref|ZP_11144089.1| acetoin utilization protein AcuC [Salimicrobium sp. MJ3]
gi|407018478|gb|EKE31203.1| acetoin utilization protein AcuC [Salimicrobium sp. MJ3]
Length = 388
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 123/277 (44%), Gaps = 36/277 (12%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
VY +Y + F + HPF+ + + ++ L ++ + ++I+ P+ +EE
Sbjct: 7 FVYSKDYATYRFSDD--HPFNQMRVELTYDLL--------KDSGALKDEDIVSPRYATEE 56
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPL---VAVPNYFVQKCYLRPMRYHVGGTLEA-- 227
+L + H+ +Y++++K +V +SE + + + K VG TL A
Sbjct: 57 ELALFHSREYIEAVK-KASVGDLSEEEGFEFGIGTEDTPIFKGMHEASSLIVGSTLSAID 115
Query: 228 GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQG 287
+ R S+N+GGG HH E + GFC Y D ++ +K L Q K M VD DAH G
Sbjct: 116 EVMQGRTDHSLNLGGGLHHGFERRASGFCIYNDGAVGIKYL-QKKYNQRVMYVDTDAHHG 174
Query: 288 NGYEKDFMNETRI-----------------FIMETCITSKAKEAIRCRIELAPYTEDQHY 330
+G + F + I ++ E + A I+ +TED+ +
Sbjct: 175 DGVQWAFYGDPDICTFSIHETGRYLFPGTGYVNERGLKEGYGYAFNLPIDA--FTEDESF 232
Query: 331 LEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLL 367
L+ E+ ++ F PDIIV G D DPL L
Sbjct: 233 LDVYESAFKKIAAYFKPDIIVSQNGADAHFYDPLTHL 269
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 14 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
R S+N+GGG HH E + GFC Y D ++ +K L Q K M VD DAH
Sbjct: 121 RTDHSLNLGGGLHHGFERRASGFCIYNDGAVGIKYL-QKKYNQRVMYVDTDAHH 173
>gi|148268213|ref|YP_001247156.1| histone deacetylase superfamily protein [Staphylococcus aureus
subsp. aureus JH9]
gi|150394281|ref|YP_001316956.1| histone deacetylase superfamily protein [Staphylococcus aureus
subsp. aureus JH1]
gi|253315892|ref|ZP_04839105.1| histone deacetylase superfamily protein [Staphylococcus aureus
subsp. aureus str. CF-Marseille]
gi|257794118|ref|ZP_05643097.1| histone deacetylase [Staphylococcus aureus A9781]
gi|258415822|ref|ZP_05682093.1| histone deacetylase [Staphylococcus aureus A9763]
gi|258420651|ref|ZP_05683590.1| histone deacetylase superfamily protein [Staphylococcus aureus
A9719]
gi|258438301|ref|ZP_05689585.1| histone deacetylase superfamily protein [Staphylococcus aureus
A9299]
gi|258443759|ref|ZP_05692098.1| histone deacetylase superfamily protein [Staphylococcus aureus
A8115]
gi|258445970|ref|ZP_05694146.1| histone deacetylase superfamily protein [Staphylococcus aureus
A6300]
gi|258448303|ref|ZP_05696430.1| histone deacetylase superfamily protein [Staphylococcus aureus
A6224]
gi|258454170|ref|ZP_05702141.1| histone deacetylase superfamily protein [Staphylococcus aureus
A5937]
gi|269203373|ref|YP_003282642.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus ED98]
gi|282893229|ref|ZP_06301463.1| acetoin utilization protein AcuC [Staphylococcus aureus A8117]
gi|282927864|ref|ZP_06335475.1| acetoin utilization protein AcuC [Staphylococcus aureus A10102]
gi|295406046|ref|ZP_06815854.1| acetoin utilization protein AcuC [Staphylococcus aureus A8819]
gi|296276749|ref|ZP_06859256.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus MR1]
gi|297245029|ref|ZP_06928906.1| acetoin utilization protein AcuC [Staphylococcus aureus A8796]
gi|384864946|ref|YP_005750305.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|387150878|ref|YP_005742442.1| NAD-independent protein deacetylase AcuC [Staphylococcus aureus
04-02981]
gi|415691799|ref|ZP_11453889.1| histone deacetylase superfamily protein [Staphylococcus aureus
subsp. aureus CGS03]
gi|417651352|ref|ZP_12301115.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21172]
gi|418424911|ref|ZP_12998023.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus VRS1]
gi|418430709|ref|ZP_13003618.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus VRS3a]
gi|418434337|ref|ZP_13006449.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus VRS4]
gi|418437350|ref|ZP_13009144.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus VRS5]
gi|418440247|ref|ZP_13011946.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus VRS6]
gi|418443265|ref|ZP_13014863.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus VRS7]
gi|418446330|ref|ZP_13017802.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus VRS8]
gi|418449350|ref|ZP_13020732.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus VRS9]
gi|418567019|ref|ZP_13131384.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21272]
gi|418638618|ref|ZP_13200906.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-3]
gi|418662733|ref|ZP_13224269.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-122]
gi|418878657|ref|ZP_13432891.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1165]
gi|418881424|ref|ZP_13435640.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1213]
gi|418884241|ref|ZP_13438433.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1769]
gi|418886991|ref|ZP_13441138.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1150]
gi|418895502|ref|ZP_13449596.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1057]
gi|418914828|ref|ZP_13468798.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|418920764|ref|ZP_13474695.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIGC348]
gi|418932051|ref|ZP_13485885.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1750]
gi|418991670|ref|ZP_13539330.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1096]
gi|419786292|ref|ZP_14312028.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-M]
gi|424775115|ref|ZP_18202114.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus CM05]
gi|443636008|ref|ZP_21120126.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21236]
gi|147741282|gb|ABQ49580.1| histone deacetylase superfamily [Staphylococcus aureus subsp.
aureus JH9]
gi|149946733|gb|ABR52669.1| histone deacetylase superfamily [Staphylococcus aureus subsp.
aureus JH1]
gi|257788090|gb|EEV26430.1| histone deacetylase [Staphylococcus aureus A9781]
gi|257839415|gb|EEV63888.1| histone deacetylase [Staphylococcus aureus A9763]
gi|257843255|gb|EEV67665.1| histone deacetylase superfamily protein [Staphylococcus aureus
A9719]
gi|257848345|gb|EEV72336.1| histone deacetylase superfamily protein [Staphylococcus aureus
A9299]
gi|257851165|gb|EEV75108.1| histone deacetylase superfamily protein [Staphylococcus aureus
A8115]
gi|257855212|gb|EEV78151.1| histone deacetylase superfamily protein [Staphylococcus aureus
A6300]
gi|257858542|gb|EEV81418.1| histone deacetylase superfamily protein [Staphylococcus aureus
A6224]
gi|257863622|gb|EEV86379.1| histone deacetylase superfamily protein [Staphylococcus aureus
A5937]
gi|262075663|gb|ACY11636.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus ED98]
gi|282590374|gb|EFB95453.1| acetoin utilization protein AcuC [Staphylococcus aureus A10102]
gi|282764547|gb|EFC04673.1| acetoin utilization protein AcuC [Staphylococcus aureus A8117]
gi|285817417|gb|ADC37904.1| NAD-independent protein deacetylase AcuC [Staphylococcus aureus
04-02981]
gi|294969043|gb|EFG45064.1| acetoin utilization protein AcuC [Staphylococcus aureus A8819]
gi|297178109|gb|EFH37357.1| acetoin utilization protein AcuC [Staphylococcus aureus A8796]
gi|312830113|emb|CBX34955.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|315130627|gb|EFT86613.1| histone deacetylase superfamily protein [Staphylococcus aureus
subsp. aureus CGS03]
gi|329727536|gb|EGG63992.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21172]
gi|371982723|gb|EHO99871.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21272]
gi|375021186|gb|EHS14691.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-3]
gi|375035690|gb|EHS28802.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-122]
gi|377693543|gb|EHT17913.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1165]
gi|377693944|gb|EHT18312.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1057]
gi|377712447|gb|EHT36664.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1750]
gi|377714068|gb|EHT38272.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1769]
gi|377721806|gb|EHT45935.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1096]
gi|377724493|gb|EHT48609.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1150]
gi|377730765|gb|EHT54831.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIG1213]
gi|377755484|gb|EHT79383.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|377763619|gb|EHT87474.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus CIGC348]
gi|383360791|gb|EID38182.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-M]
gi|387717849|gb|EIK05847.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus VRS3a]
gi|387718877|gb|EIK06834.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus VRS1]
gi|387724670|gb|EIK12319.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus VRS4]
gi|387726850|gb|EIK14392.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus VRS5]
gi|387729788|gb|EIK17206.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus VRS6]
gi|387735012|gb|EIK22155.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus VRS8]
gi|387736219|gb|EIK23321.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus VRS9]
gi|387736338|gb|EIK23434.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus VRS7]
gi|402346973|gb|EJU82043.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus CM05]
gi|408423821|emb|CCJ11232.1| Histone deacetylase superfamily [Staphylococcus aureus subsp.
aureus ST228]
gi|408425811|emb|CCJ13198.1| Histone deacetylase superfamily [Staphylococcus aureus subsp.
aureus ST228]
gi|408427798|emb|CCJ15161.1| Histone deacetylase superfamily [Staphylococcus aureus subsp.
aureus ST228]
gi|408429787|emb|CCJ26952.1| Histone deacetylase superfamily [Staphylococcus aureus subsp.
aureus ST228]
gi|408431774|emb|CCJ19089.1| Acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus ST228]
gi|408433768|emb|CCJ21053.1| Acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus ST228]
gi|408435760|emb|CCJ23020.1| Acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus ST228]
gi|408437744|emb|CCJ24987.1| Acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus ST228]
gi|443408517|gb|ELS67036.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus 21236]
Length = 389
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 132/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ + ++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATGDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>gi|418654605|ref|ZP_13216504.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-99]
gi|375014804|gb|EHS08476.1| histone deacetylase family protein [Staphylococcus aureus subsp.
aureus IS-99]
Length = 375
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 132/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ + ++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATGDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>gi|403070424|ref|ZP_10911756.1| acetoin utilization protein [Oceanobacillus sp. Ndiop]
Length = 383
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 128/303 (42%), Gaps = 28/303 (9%)
Query: 114 VYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQ 173
V+ ++ ++ F E HPF+ K+ L K + A QD II P+ +EE+
Sbjct: 8 VFSDDFLIYHFNEE--HPFNQKR-----VLLAKELLE--ASAMLYAQD-IIPPRMATEEE 57
Query: 174 LLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLA 231
+ + H Y+ ++K + +++ + + + + VGGTL A L
Sbjct: 58 IGLFHDRAYINAVKQADSLSEDEAYEYGLGTEDTPIFPNMHEASSFAVGGTLTAVDEVLT 117
Query: 232 LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291
RR ++N+GGG HHA + K GFC Y D ++ +K + + ++ + VD DAH G+G +
Sbjct: 118 GRRDHALNLGGGLHHALQRKAAGFCIYNDCAIAIKYIREKYNLKV-LYVDTDAHHGDGVQ 176
Query: 292 KDFMNETRIFIMETCITS---------------KAKEAIRCRIELAPYTEDQHYLEKIEA 336
F ++ + T K + + +T+D+ YL E
Sbjct: 177 WAFYDDPNVCTFSIHETGRYLFPGSGNVSERGIKQGHGYSFNLPIDAFTQDESYLHSYET 236
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
+ F PDII+ G D DPL L + + R +L A + + T
Sbjct: 237 AFREIAKFFNPDIIITQNGADAHCFDPLTHLCGTMEIFNRIPQLAHELAHQYCNGKWIAT 296
Query: 397 SGG 399
GG
Sbjct: 297 GGG 299
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L RR ++N+GGG HHA + K GFC Y D ++ +K + + ++ + V
Sbjct: 107 GTLTAVDEVLTGRRDHALNLGGGLHHALQRKAAGFCIYNDCAIAIKYIREKYNLKV-LYV 165
Query: 62 DLDAHQ 67
D DAH
Sbjct: 166 DTDAHH 171
>gi|423395057|ref|ZP_17372258.1| hypothetical protein ICU_00751 [Bacillus cereus BAG2X1-1]
gi|423405919|ref|ZP_17383068.1| hypothetical protein ICY_00604 [Bacillus cereus BAG2X1-3]
gi|401655828|gb|EJS73356.1| hypothetical protein ICU_00751 [Bacillus cereus BAG2X1-1]
gi|401660588|gb|EJS78066.1| hypothetical protein ICY_00604 [Bacillus cereus BAG2X1-3]
Length = 397
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 113/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L ++ FI+ +I P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKSGFISPSQVISPRMATDEEIAYIHTEEYINAVKLAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +LE ++ F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLESYRTVVKEVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|206969663|ref|ZP_03230617.1| acetoin utilization protein AcuC [Bacillus cereus AH1134]
gi|206735351|gb|EDZ52519.1| acetoin utilization protein AcuC [Bacillus cereus AH1134]
Length = 388
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 20 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYIHTEEYINAVKRAGEGKLEKS 79
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 80 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 131
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 132 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 190
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +LE ++ F PDII
Sbjct: 191 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLESYRTVVKEVAAYFKPDII 250
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 251 LTQNGADAHYYDPL 264
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 107 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 165
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 166 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 197
>gi|393725141|ref|ZP_10345068.1| histone deacetylase [Sphingomonas sp. PAMC 26605]
Length = 324
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 95/206 (46%), Gaps = 7/206 (3%)
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 282
GT A LAL G++ N GG HHA G G+C + D+++ L + ++ +IVD
Sbjct: 95 GTWLAARLALDHGFAANSAGGSHHALADTGAGYCVFNDLAIAAVRLVEEGDVARVLIVDC 154
Query: 283 DAHQGNGYEK-----DFMNETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAG 337
D HQG+G + I + KA+ + + LA T D YL + A
Sbjct: 155 DVHQGDGTAALTAGHPGIATYSIHAEKNFPARKARSTL--DVPLADGTGDAAYLATLAAT 212
Query: 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397
L + + P++I+Y AG D L D LG LA+S +G+I R+ + A R + +
Sbjct: 213 LLPLIDEYRPELILYQAGIDPLAGDRLGRLALSDEGLIARETFIAQSAARRGIALASTVG 272
Query: 398 GGYLKQTARIIADSILNLADLGLISR 423
GGY + + + LG I R
Sbjct: 273 GGYGDDVMALARAHVRAIVTLGEIYR 298
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A LAL G++ N GG HHA G G+C + D+++ L + ++ +IVD
Sbjct: 95 GTWLAARLALDHGFAANSAGGSHHALADTGAGYCVFNDLAIAAVRLVEEGDVARVLIVDC 154
Query: 64 DAHQ 67
D HQ
Sbjct: 155 DVHQ 158
>gi|418452154|ref|ZP_13023487.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus VRS10]
gi|387744292|gb|EIK31062.1| acetoin utilization protein acuC [Staphylococcus aureus subsp.
aureus VRS10]
Length = 389
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 133/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ + ++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATGDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNET-RIFIMETCITSKAKEAI----RCRIELAPYTEDQHYLEKIEAGLERS 341
++ET + F + ++ E I + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFFFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>gi|423452027|ref|ZP_17428880.1| hypothetical protein IEE_00771 [Bacillus cereus BAG5X1-1]
gi|401142098|gb|EJQ49647.1| hypothetical protein IEE_00771 [Bacillus cereus BAG5X1-1]
Length = 397
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L ++ FI+ +I P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKSGFISPSQVISPRMATDEEIAFIHTEEYINAVKLAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLDSYRTVVKEVAEYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|402563821|ref|YP_006606545.1| acetoin utilization protein AcuC [Bacillus thuringiensis HD-771]
gi|401792473|gb|AFQ18512.1| acetoin utilization protein AcuC [Bacillus thuringiensis HD-771]
Length = 388
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 20 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYIHTEEYINAVKRAGEGKLEKS 79
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 80 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 131
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 132 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 190
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +LE ++ F PDII
Sbjct: 191 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLEAYRTVVKEVAAYFKPDII 250
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 251 LTQNGADAHYYDPL 264
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 107 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 165
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 166 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 197
>gi|359767856|ref|ZP_09271638.1| putative acetoin utilization protein [Gordonia polyisoprenivorans
NBRC 16320]
gi|378717648|ref|YP_005282537.1| putative acetoin dehydrogenase [Gordonia polyisoprenivorans VH2]
gi|359314772|dbj|GAB24471.1| putative acetoin utilization protein [Gordonia polyisoprenivorans
NBRC 16320]
gi|375752351|gb|AFA73171.1| putative acetoin dehydrogenase [Gordonia polyisoprenivorans VH2]
Length = 414
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 122/281 (43%), Gaps = 34/281 (12%)
Query: 132 FDSKKW--KHIFNYLWKHIFNYLVEAKFITQD-NIIEPQEVSEEQLLIAHTEKYLKSLKW 188
F S +W H N + + L + + D ++ +P ++ ++ L+ H+ Y+ +++
Sbjct: 11 FLSYRWAHSHPMNPVRLALTMSLARSLGVLDDVDLADPLQIDDDALIPVHSRDYIDAVR- 69
Query: 189 SFNVAAISEVCPLVAV------PNYFVQKCYLRPMRYHVGGTLEAGFL----ALRRGWSI 238
+ S PL+A + V R VGGTL A ++RR ++
Sbjct: 70 AVGSGTASLSGPLLARLFGLGDADNPVFDGMHEAARLLVGGTLAAAQAVASGSVRR--AV 127
Query: 239 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNET 298
NIGGG HHA ++ GFC Y D S+ ++ L A I D+DAH G+G + +F+ +
Sbjct: 128 NIGGGMHHAMRSRAAGFCIYNDCSVAIRWLLDHGYDRIAYI-DIDAHHGDGVQAEFVADP 186
Query: 299 RIFIME---------------TCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLR 343
R+ + T I + + P T D+ +L A + +
Sbjct: 187 RVMTISLHQHPATLWPGTGWPTEIGEEDAHGTAVNLPFMPNTPDRLWLRGFHAVVPSMIA 246
Query: 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMK 384
F P I++ G D DPL LA++ G +R ++ M+
Sbjct: 247 EFAPQILISQCGADSHRADPLTDLALTVDG--QRAAMIAMR 285
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 12 ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++RR ++NIGGG HHA ++ GFC Y D S+ ++ L A I D+DAH
Sbjct: 122 SVRR--AVNIGGGMHHAMRSRAAGFCIYNDCSVAIRWLLDHGYDRIAYI-DIDAHH 174
>gi|423470868|ref|ZP_17447612.1| hypothetical protein IEM_02174 [Bacillus cereus BAG6O-2]
gi|423557758|ref|ZP_17534060.1| hypothetical protein II3_02962 [Bacillus cereus MC67]
gi|401192295|gb|EJQ99311.1| hypothetical protein II3_02962 [Bacillus cereus MC67]
gi|402434606|gb|EJV66644.1| hypothetical protein IEM_02174 [Bacillus cereus BAG6O-2]
Length = 397
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L ++ FI+ +I P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKSGFISPSQVISPRMATDEEIAFIHTEEYINAVKLAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLDSYRTVVKEVAEYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|452944050|ref|YP_007500215.1| histone deacetylase superfamily [Hydrogenobaculum sp. HO]
gi|452882468|gb|AGG15172.1| histone deacetylase superfamily [Hydrogenobaculum sp. HO]
Length = 309
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 245 HHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIME 304
HHA K GFC + ++++ + Q+ I D D H NG + F + +F+
Sbjct: 123 HHAEYAKAMGFCIFNNVAIGARKA-QNLGYKKVYIADFDVHHPNGTQHIFYEDGSVFLFS 181
Query: 305 T-CI-----TSKAKE-------AIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIV 351
T C T A E + L T D+ Y+E + S R+F PDI++
Sbjct: 182 THCYPFYPGTGAADEKGFGEGLGTTLNVPLRAGTGDETYIEVYQTKFSESFRAFKPDILL 241
Query: 352 YNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY-LKQTARIIAD 410
+AG D+ +DPLG + ++ QGI ++ A+E VP+V GGY TA+ I D
Sbjct: 242 ISAGYDLHEDDPLGPMRVTSQGIKEITNILINAAKELNVPVVATLEGGYNYNATAQGILD 301
Query: 411 SILNLAD 417
++ N+ +
Sbjct: 302 TLFNMVN 308
>gi|339007493|ref|ZP_08640068.1| acetoin utilization protein AcuC [Brevibacillus laterosporus LMG
15441]
gi|338776702|gb|EGP36230.1| acetoin utilization protein AcuC [Brevibacillus laterosporus LMG
15441]
Length = 384
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 121/280 (43%), Gaps = 36/280 (12%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
++Y +Y +FF E HPF+ K+ ++ + + +T +NII P+ ++E
Sbjct: 7 LIYSADYTKYFFHEE--HPFNQKRLLLTYDLMQAY--------GLLTPENIIAPRYATDE 56
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH-----VGGTLEA 227
+LL+ H +L+ +K E PL A + + + VGG++ A
Sbjct: 57 ELLLVHDPSFLEIVK---RQGTQPEELPLAASYGLGTEDVPIFANMHEATSLIVGGSISA 113
Query: 228 GFLAL--RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAH 285
+ + + S N GG HHA + GFC Y D S+ + + + + + +D DAH
Sbjct: 114 VDIVMNGQAEHSFNPAGGLHHAFRGRASGFCIYNDCSVAIAYIRKHWD-ARVLYIDTDAH 172
Query: 286 QGNGYEKDFMNETRIFIMETCITSK--------------AKEAIRC-RIELAPYTEDQHY 330
G+G + F ++ + + T K + C + L +TED +
Sbjct: 173 HGDGVQWAFYDDPNVMTISLHETGKYLFPGTGNVTERGDGQGFGYCVNVPLDAFTEDDSF 232
Query: 331 LEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAIS 370
LE E+ L R F PDII+ G D DPL L+ S
Sbjct: 233 LEIYESLLPRIAHGFQPDIIITQNGCDAHNYDPLTHLSCS 272
>gi|423657610|ref|ZP_17632909.1| hypothetical protein IKG_04598 [Bacillus cereus VD200]
gi|401289166|gb|EJR94887.1| hypothetical protein IKG_04598 [Bacillus cereus VD200]
Length = 397
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKGGFISPSQIISPRTATDEEIAYVHTEEYINAVKRAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLKSYRTVVKEVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|85374902|ref|YP_458964.1| hypothetical protein ELI_10375 [Erythrobacter litoralis HTCC2594]
gi|84787985|gb|ABC64167.1| hypothetical protein ELI_10375 [Erythrobacter litoralis HTCC2594]
Length = 307
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 88/187 (47%), Gaps = 3/187 (1%)
Query: 217 MRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIST 276
+R+ GGT A LA+ G++ N G HHA G G+C + D+++ L
Sbjct: 79 VRHTNGGTWLAAQLAMEHGYAANSAAGSHHALFDTGAGYCVFNDLAVAANRLIAEGDAKR 138
Query: 277 AMIVDLDAHQGNGYEK--DFMNETRIFIMETCITSKAKEAIRCR-IELAPYTEDQHYLEK 333
++VDLD HQG+G ++ F M ++A + L ED YLE
Sbjct: 139 VLVVDLDVHQGDGTASLTALRDDIVTFSMHAEKNFPVRKARSNHDVALPDGMEDVAYLET 198
Query: 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIV 393
+ L R L PDI++Y AG D +D LG L ++ +G+ RD V + R R +PI
Sbjct: 199 LAEHLPRLLDDVAPDIVLYQAGVDPHEDDKLGRLNLTSEGLDERDRFVVREVRRRGLPIA 258
Query: 394 MLTSGGY 400
GGY
Sbjct: 259 SALGGGY 265
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT A LA+ G++ N G HHA G G+C + D+++ L ++VDL
Sbjct: 85 GTWLAAQLAMEHGYAANSAAGSHHALFDTGAGYCVFNDLAVAANRLIAEGDAKRVLVVDL 144
Query: 64 DAHQ 67
D HQ
Sbjct: 145 DVHQ 148
>gi|423598040|ref|ZP_17574040.1| hypothetical protein III_00842 [Bacillus cereus VD078]
gi|401237501|gb|EJR43952.1| hypothetical protein III_00842 [Bacillus cereus VD078]
Length = 388
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L ++ FI+ +I P+ ++E++ HTE+Y+ ++K +
Sbjct: 20 HPFNQLRVTLTYDLLQKSGFISPSQVISPRMATDEEIAFIHTEEYINAVKLAGEGKLEKS 79
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 80 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 131
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 132 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 190
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 191 HETGRYLFPGTGAVNERGQGNGYNYSFNVPLDAFTEDESFLDSYRTVVKEVAAYFKPDII 250
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 251 LTQNGADAHYYDPL 264
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 107 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 165
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 166 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 197
>gi|296505134|ref|YP_003666834.1| acetoin utilization protein AcuC [Bacillus thuringiensis BMB171]
gi|296326186|gb|ADH09114.1| acetoin utilization protein AcuC [Bacillus thuringiensis BMB171]
Length = 388
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 20 HPFNQLRVTLTYDLLQKGGFISPSQIISPRTATDEEIAYVHTEEYINAVKRAGEGKLEKS 79
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 80 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 131
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 132 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 190
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 191 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLKSYRTVVKEVAAYFKPDII 250
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 251 LTQNGADAHYYDPL 264
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 107 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 165
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 166 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 197
>gi|149181079|ref|ZP_01859579.1| acetoin utilization protein [Bacillus sp. SG-1]
gi|148851166|gb|EDL65316.1| acetoin utilization protein [Bacillus sp. SG-1]
Length = 391
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 112/256 (43%), Gaps = 31/256 (12%)
Query: 138 KHIFN-YLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAIS 196
H FN + K + L EA + +D+I+EP+ ++E+L + H ++ ++K +A S
Sbjct: 21 NHPFNQFRLKLTIDLLEEAGALNKDDIVEPRLATDEELHLIHDPAFVSAVK-----SAGS 75
Query: 197 EVCPLVAVPNYFVQ-------KCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFHHA 247
P +Y + K VGGTL A + + + GGG HH
Sbjct: 76 GTLPQDKAESYGIGTEDTPIFKGMHEASALMVGGTLTAVDCVMGGASKHAAHFGGGLHHG 135
Query: 248 SETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCI 307
+ K GFC Y D S+ +K + Q K + + VD DAH G+G + F ++ + +
Sbjct: 136 FKGKASGFCIYNDSSVAIKYM-QEKYGARVLYVDTDAHHGDGVQWSFYDDPDVCTLSIHE 194
Query: 308 TSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVY 352
T + I R I L +TED+ +L E + + F PD+I+
Sbjct: 195 TGRYLFPGTGNINERGHGKGYGYSFNIPLDAFTEDESWLHAYETSIREVIEFFKPDVILS 254
Query: 353 NAGTDVLLNDPLGLLA 368
GTD DPL L+
Sbjct: 255 QNGTDAHYYDPLTHLS 270
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+ + GGG HH + K GFC Y D S+ +K + Q K + + VD DAH
Sbjct: 125 AAHFGGGLHHGFKGKASGFCIYNDSSVAIKYM-QEKYGARVLYVDTDAHH 173
>gi|423660489|ref|ZP_17635658.1| hypothetical protein IKM_00886 [Bacillus cereus VDM022]
gi|401302397|gb|EJS07976.1| hypothetical protein IKM_00886 [Bacillus cereus VDM022]
Length = 397
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L ++ FI+ +I P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKSGFISPSQVISPRMATDEEIAFIHTEEYINAVKLAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYNYSFNVPLDAFTEDESFLDSYRTVVKEVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|297625091|ref|YP_003706525.1| histone deacetylase [Truepera radiovictrix DSM 17093]
gi|297166271|gb|ADI15982.1| Histone deacetylase [Truepera radiovictrix DSM 17093]
Length = 400
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 122/285 (42%), Gaps = 41/285 (14%)
Query: 114 VYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQ 173
VY PE + ++L HPF + + + L + + + P+ + E Q
Sbjct: 15 VYSPELS--RYRLSDTHPFKPLRLELTRSLLQS--------CGLLGAAHEVAPRPLEEAQ 64
Query: 174 LLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKC--YLRPMRYHV-----GGTLE 226
LL HT Y+ ++K +S PL Y + + P + G T
Sbjct: 65 LLKLHTPDYVDAVK------RVSRGEPLAEAVAYGLGTADNPIFPGMHEAILTVCGATQT 118
Query: 227 AGFL--ALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDA 284
A L A R ++++ GG HHA + GFC Y D++L + L ++ + +DLDA
Sbjct: 119 AVELVAAGRARRALSLSGGLHHAQAGQMSGFCTYNDVALAI-LEATARFGARVAYIDLDA 177
Query: 285 HQGNGYEKDFMNETRIFIMETCITSK---------------AKEAIRCRIELAPYTEDQH 329
H G+G + F + + + + + + L P+TED+
Sbjct: 178 HHGDGVQWLFYESAEVMTISLHESGRYLFPGTGHTFEVGRGPGRGLSVNVPLEPFTEDES 237
Query: 330 YLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGI 374
YLE +A + +L +F PD+IV AG D+ DPL L +S QGI
Sbjct: 238 YLEVFDAVVPTALAAFHPDLIVLQAGADMHRFDPLADLNLSVQGI 282
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++++ GG HHA + GFC Y D++L + L ++ + +DLDAH
Sbjct: 131 ALSLSGGLHHAQAGQMSGFCTYNDVALAI-LEATARFGARVAYIDLDAHH 179
>gi|15924725|ref|NP_372259.1| acetoin utilization protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927312|ref|NP_374845.1| acetoin utilization protein [Staphylococcus aureus subsp. aureus
N315]
gi|156980052|ref|YP_001442311.1| acetoin utilization protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|255006521|ref|ZP_05145122.2| acetoin utilization protein [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|54036696|sp|P64376.1|ACUC_STAAN RecName: Full=Acetoin utilization protein AcuC
gi|54040696|sp|P64375.1|ACUC_STAAM RecName: Full=Acetoin utilization protein AcuC
gi|13701530|dbj|BAB42824.1| acetoin utilization protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247507|dbj|BAB57897.1| acetoin utilization protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|156722187|dbj|BAF78604.1| acetoin utilization protein [Staphylococcus aureus subsp. aureus
Mu3]
Length = 389
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 132/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ + ++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATGDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + + + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYIAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + + + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYIAKEYN-QRVLIIDTDAHH 176
>gi|75760728|ref|ZP_00740751.1| Acetoin utilization acuC protein [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74491783|gb|EAO54976.1| Acetoin utilization acuC protein [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 397
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDXLQKGGFISPSQIISPRMATDEEIAYVHTEEYINAVKRAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLKSYRTVVKEVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|423650564|ref|ZP_17626134.1| hypothetical protein IKA_04351 [Bacillus cereus VD169]
gi|401281723|gb|EJR87629.1| hypothetical protein IKA_04351 [Bacillus cereus VD169]
Length = 397
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYVHTEEYINAVKRAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLKSYRTVVKEVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|423495557|ref|ZP_17472201.1| hypothetical protein IEW_04455 [Bacillus cereus CER057]
gi|423497647|ref|ZP_17474264.1| hypothetical protein IEY_00874 [Bacillus cereus CER074]
gi|401150464|gb|EJQ57923.1| hypothetical protein IEW_04455 [Bacillus cereus CER057]
gi|401162127|gb|EJQ69485.1| hypothetical protein IEY_00874 [Bacillus cereus CER074]
Length = 388
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L ++ FI+ +I P+ ++E++ HTE+Y+ ++K +
Sbjct: 20 HPFNQLRVTLTYDLLQKSGFISPSQVIAPRMATDEEIAFIHTEEYINAVKLAGEGKLEKS 79
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 80 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 131
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 132 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 190
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 191 HETGRYLFPGTGAVNERGQGNGYNYSFNVPLDAFTEDESFLDSYRTVVKEVAAYFKPDII 250
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 251 LTQNGADAHYYDPL 264
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 107 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 165
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 166 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 197
>gi|418427866|ref|ZP_13000870.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus VRS2]
gi|387717742|gb|EIK05741.1| acetoin utilization protein AcuC [Staphylococcus aureus subsp.
aureus VRS2]
Length = 389
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 131/300 (43%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ + ++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATGDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHVSHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>gi|197123863|ref|YP_002135814.1| histone deacetylase [Anaeromyxobacter sp. K]
gi|196173712|gb|ACG74685.1| histone deacetylase superfamily [Anaeromyxobacter sp. K]
Length = 594
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 129/303 (42%), Gaps = 19/303 (6%)
Query: 115 YRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQL 174
Y P Y + LE + ++ + W +L ++ + + P+ +S E L
Sbjct: 23 YDPRYRLPLSGLESGAGMEPRRADFV---AW-----WLADSGAVPRSRRRTPRRISFEDL 74
Query: 175 LIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALR- 233
H + L+SL +A + V P VP V +R GGTL A LR
Sbjct: 75 ARVHDAELLESLGHPDTLARVFAVDP-SDVPVDEVMTT----VRLACGGTLGAARETLRT 129
Query: 234 RGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKD 293
R +IN+ GGFHHA GGFC D+++ + + ++DLDAH +G
Sbjct: 130 RAPAINLLGGFHHAFPGAAGGFCPVNDVAVAIAAVRAEGFSGRVAVIDLDAHPPDGIAAC 189
Query: 294 FMNETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYN 353
+ +I + L P + D YLE + A L R R P +
Sbjct: 190 LAQDPDHWIGSISGSDWGPLEGVDETVLPPGSGDDAYLEALGALLSRMPR---PQLAFVL 246
Query: 354 AGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSIL 413
AG DVL D G L +S G RD LV A VP V L++GGY +++ R +A + +
Sbjct: 247 AGGDVLAGDRFGQLGLSLDGARERDLLV--AAELDFVPTVWLSAGGYSRRSWRALAGTGM 304
Query: 414 NLA 416
+A
Sbjct: 305 AVA 307
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 4 GTLEAGFLALR-RGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 62
GTL A LR R +IN+ GGFHHA GGFC D+++ + + ++D
Sbjct: 118 GTLGAARETLRTRAPAINLLGGFHHAFPGAAGGFCPVNDVAVAIAAVRAEGFSGRVAVID 177
Query: 63 LDAH 66
LDAH
Sbjct: 178 LDAH 181
>gi|423358245|ref|ZP_17335748.1| hypothetical protein IC1_00225 [Bacillus cereus VD022]
gi|423560825|ref|ZP_17537101.1| hypothetical protein II5_00229 [Bacillus cereus MSX-A1]
gi|401085932|gb|EJP94164.1| hypothetical protein IC1_00225 [Bacillus cereus VD022]
gi|401202670|gb|EJR09520.1| hypothetical protein II5_00229 [Bacillus cereus MSX-A1]
Length = 397
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYVHTEEYINAVKRAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLKSYRTVVKEVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|423489834|ref|ZP_17466516.1| hypothetical protein IEU_04457 [Bacillus cereus BtB2-4]
gi|402431125|gb|EJV63197.1| hypothetical protein IEU_04457 [Bacillus cereus BtB2-4]
Length = 397
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L ++ FI+ +I P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKSGFISPSQVIAPRMATDEEIAFIHTEEYINAVKLAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYNYSFNVPLDAFTEDESFLDSYRTVVKEVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|423512768|ref|ZP_17489299.1| hypothetical protein IG3_04265 [Bacillus cereus HuA2-1]
gi|402447692|gb|EJV79542.1| hypothetical protein IG3_04265 [Bacillus cereus HuA2-1]
Length = 397
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L ++ FI+ +I P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKSGFISSSQVIAPRMATDEEIAYVHTEEYINAVKRAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYNYSFNVPLDAFTEDESFLDSYRTVVKEVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|423612844|ref|ZP_17588705.1| hypothetical protein IIM_03559 [Bacillus cereus VD107]
gi|401244832|gb|EJR51191.1| hypothetical protein IIM_03559 [Bacillus cereus VD107]
Length = 397
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 114/255 (44%), Gaps = 37/255 (14%)
Query: 138 KHIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS------- 189
+H FN L + ++ L ++ FI+ +I P+ ++E++ HTE+Y+ ++K +
Sbjct: 28 EHPFNQLRVTLTYDLLQKSGFISPSQVIPPRMATDEEIAFIHTEEYINAVKRAGEGKLEK 87
Query: 190 ---FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGF 244
+E P+ PN L VGGTL A L+ + ++N+GGG
Sbjct: 88 SIAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGL 139
Query: 245 HHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIME 304
HH K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 140 HHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTIS 198
Query: 305 TCITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDI 349
T + A+ R + L +TED+ +L+ ++ F PDI
Sbjct: 199 LHETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLDSYRTVVKEVAAYFKPDI 258
Query: 350 IVYNAGTDVLLNDPL 364
I+ G D DPL
Sbjct: 259 ILTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|170705511|ref|ZP_02895975.1| acetoin utilization protein AcuC [Bacillus anthracis str. A0389]
gi|170129636|gb|EDS98499.1| acetoin utilization protein AcuC [Bacillus anthracis str. A0389]
Length = 397
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYIHTEEYINAVKRAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLDSYRTVVKEVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|423549589|ref|ZP_17525916.1| hypothetical protein IGW_00220 [Bacillus cereus ISP3191]
gi|401190848|gb|EJQ97886.1| hypothetical protein IGW_00220 [Bacillus cereus ISP3191]
Length = 397
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYIHTEEYINAVKRAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLDSYRTVVKEVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|423521451|ref|ZP_17497924.1| hypothetical protein IGC_00834 [Bacillus cereus HuA4-10]
gi|401177653|gb|EJQ84840.1| hypothetical protein IGC_00834 [Bacillus cereus HuA4-10]
Length = 397
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L ++ FI+ +I P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKSGFISPSQVIAPRMATDEEIAYVHTEEYINAVKRAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLDSYRTVVKEVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|434377818|ref|YP_006612462.1| acetoin utilization protein AcuC [Bacillus thuringiensis HD-789]
gi|401876375|gb|AFQ28542.1| acetoin utilization protein AcuC [Bacillus thuringiensis HD-789]
Length = 388
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 20 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYVHTEEYINAVKRAGEGKLEKS 79
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 80 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 131
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 132 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 190
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 191 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLKSYRTVVKEVAAYFKPDII 250
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 251 LTQNGADAHYYDPL 264
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 107 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 165
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 166 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 197
>gi|386715102|ref|YP_006181425.1| acetoin utilization protein AcuC [Halobacillus halophilus DSM 2266]
gi|384074658|emb|CCG46151.1| acetoin utilization protein AcuC [Halobacillus halophilus DSM 2266]
Length = 390
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 111/247 (44%), Gaps = 23/247 (9%)
Query: 139 HIFNYLWKHIFNYLVEAK-FITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISE 197
H FN + + L+EA + QD+ I P+ +EE+L +AH+ Y++++K + +SE
Sbjct: 22 HPFNQMRVILTKELLEASSALIQDHFITPRHATEEELSLAHSRTYIQAVKQA-GQGLLSE 80
Query: 198 VCPL---VAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFHHASETKG 252
+ + + + K VG TL A + R ++N+GGG HH E K
Sbjct: 81 EDGMEFGIGTEDTPMFKGMHEASSLLVGSTLSAIEAVMENRVKHALNLGGGLHHGFERKA 140
Query: 253 GGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITS--- 309
GFC Y D ++ +K L + K + VD DAH G+G + F ++ + T
Sbjct: 141 SGFCIYNDGAVGIKYL-RKKYDCKVLYVDTDAHHGDGVQWAFYDDPNVCTFSIHETGRYL 199
Query: 310 ------------KAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTD 357
K + + +TED+ +L+ E ++ + F PD+IV G D
Sbjct: 200 FPGTGNVNERGLKEGYGYSFNLPIDAFTEDESFLQVYETAMKEIVHYFKPDVIVTQNGAD 259
Query: 358 VLLNDPL 364
DPL
Sbjct: 260 AHFLDPL 266
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++N+GGG HH E K GFC Y D ++ +K L + K + VD DAH
Sbjct: 125 ALNLGGGLHHGFERKASGFCIYNDGAVGIKYL-RKKYDCKVLYVDTDAHH 173
>gi|303280659|ref|XP_003059622.1| histone deacetylase [Micromonas pusilla CCMP1545]
gi|226459458|gb|EEH56754.1| histone deacetylase [Micromonas pusilla CCMP1545]
Length = 403
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 91/194 (46%), Gaps = 28/194 (14%)
Query: 237 SINIGGGFHHASETKGGGFCAYADISLLVKL-------LFQSKSISTAMIVDLDAHQGNG 289
+ I GG HHA G GFC + DI++ + L ++S + +IVDLD HQGNG
Sbjct: 184 AAQIAGGTHHAFADAGEGFCVFNDIAVAATMALREYDHLLSARSKTPILIVDLDVHQGNG 243
Query: 290 YEKDFMNETRIFIM----ETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF 345
K F ++ R+ E K K +EL D ++ E + ++
Sbjct: 244 TAKIFEDDPRVVTFSAHGEKNYPWKTKMRSTHDVELPDDASDDQCVKVFEEWIPFLFETY 303
Query: 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVF------MKAR----ERR------ 389
P ++ + AG D L +D G L +S +G++RR+ LV+ KAR E+R
Sbjct: 304 DPQLVFFQAGVDALRDDAFGRLGMSREGLLRRNHLVYDACLRRGKARGGGEEKRTGERSA 363
Query: 390 -VPIVMLTSGGYLK 402
VP+V+ GGY +
Sbjct: 364 HVPLVVTMGGGYSR 377
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKL-------LFQSKSISTAMIVDLDAHQ 67
+ I GG HHA G GFC + DI++ + L ++S + +IVDLD HQ
Sbjct: 184 AAQIAGGTHHAFADAGEGFCVFNDIAVAATMALREYDHLLSARSKTPILIVDLDVHQ 240
>gi|196043782|ref|ZP_03111019.1| acetoin utilization protein AcuC [Bacillus cereus 03BB108]
gi|300118894|ref|ZP_07056607.1| acetoin utilization protein [Bacillus cereus SJ1]
gi|376268604|ref|YP_005121316.1| NAD-independent protein deacetylase AcuC [Bacillus cereus F837/76]
gi|196025118|gb|EDX63788.1| acetoin utilization protein AcuC [Bacillus cereus 03BB108]
gi|298723739|gb|EFI64468.1| acetoin utilization protein [Bacillus cereus SJ1]
gi|364514404|gb|AEW57803.1| NAD-independent protein deacetylase AcuC [Bacillus cereus F837/76]
Length = 388
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 20 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYIHTEEYINAVKRAGEGKLEKS 79
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 80 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 131
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 132 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 190
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 191 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLDSYRTVVKEVAAYFKPDII 250
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 251 LTQNGADAHYYDPL 264
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 107 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 165
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 166 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 197
>gi|118479808|ref|YP_896959.1| acetoin utilization protein [Bacillus thuringiensis str. Al Hakam]
gi|118419033|gb|ABK87452.1| acetoin utilization protein [Bacillus thuringiensis str. Al Hakam]
Length = 397
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYIHTEEYINAVKRAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLDSYRTVVKEVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|423573644|ref|ZP_17549763.1| hypothetical protein II9_00865 [Bacillus cereus MSX-D12]
gi|401213975|gb|EJR20709.1| hypothetical protein II9_00865 [Bacillus cereus MSX-D12]
Length = 397
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 111/254 (43%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYIHTEEYINAVKRAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IALTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ + F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLDSYRTVVREVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|42783850|ref|NP_981097.1| acetoin utilization protein AcuC [Bacillus cereus ATCC 10987]
gi|42739780|gb|AAS43705.1| acetoin utilization protein AcuC [Bacillus cereus ATCC 10987]
Length = 388
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 20 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYIHTEEYINAVKRAGEGKLEKS 79
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 80 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 131
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 132 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 190
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 191 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLDSYRTVVKEVAAYFKPDII 250
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 251 LTQNGADAHYYDPL 264
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 107 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 165
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 166 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 197
>gi|49481428|ref|YP_038712.1| acetoin utilization protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49332984|gb|AAT63630.1| acetoin utilization protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 388
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 111/254 (43%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 20 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYIHTEEYINAVKRAGEGKLEKS 79
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 80 IALTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 131
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 132 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 190
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ + F PDII
Sbjct: 191 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLDSYRTVVREVAAYFKPDII 250
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 251 LTQNGADAHYYDPL 264
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 107 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 165
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 166 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 197
>gi|218899820|ref|YP_002448231.1| acetoin utilization protein AcuC [Bacillus cereus G9842]
gi|218541257|gb|ACK93651.1| acetoin utilization protein AcuC [Bacillus cereus G9842]
Length = 388
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 20 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYVHTEEYINAVKRAGEGKLEKS 79
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 80 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 131
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 132 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 190
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 191 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLKSYRTVVKEVAAYFKPDII 250
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 251 LTQNGADAHYYDPL 264
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 107 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 165
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 166 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 197
>gi|218235910|ref|YP_002369464.1| acetoin utilization protein AcuC [Bacillus cereus B4264]
gi|218163867|gb|ACK63859.1| acetoin utilization protein AcuC [Bacillus cereus B4264]
Length = 388
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 20 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYVHTEEYINAVKRAGEGKLEKS 79
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 80 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 131
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 132 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 190
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 191 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLKSYRTVVKEVAAYFKPDII 250
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 251 LTQNGADAHYYDPL 264
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 107 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 165
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 166 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 197
>gi|254725040|ref|ZP_05186823.1| acetoin utilization protein AcuC [Bacillus anthracis str. A1055]
Length = 388
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 20 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYIHTEEYINAVKRAGEGKLEKS 79
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 80 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 131
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 132 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 190
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 191 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLDSYRTVVKEVAAYFKPDII 250
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 251 LTQNGADAHYYDPL 264
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 107 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 165
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 166 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 197
>gi|30264739|ref|NP_847116.1| acetoin utilization protein AcuC [Bacillus anthracis str. Ames]
gi|47530212|ref|YP_021561.1| acetoin utilization protein AcuC [Bacillus anthracis str. 'Ames
Ancestor']
gi|49187557|ref|YP_030810.1| acetoin utilization protein AcuC [Bacillus anthracis str. Sterne]
gi|65322036|ref|ZP_00394995.1| COG0123: Deacetylases, including yeast histone deacetylase and
acetoin utilization protein [Bacillus anthracis str.
A2012]
gi|165869634|ref|ZP_02214292.1| acetoin utilization protein AcuC [Bacillus anthracis str. A0488]
gi|167633944|ref|ZP_02392267.1| acetoin utilization protein AcuC [Bacillus anthracis str. A0442]
gi|167638079|ref|ZP_02396357.1| acetoin utilization protein AcuC [Bacillus anthracis str. A0193]
gi|170685701|ref|ZP_02876924.1| acetoin utilization protein AcuC [Bacillus anthracis str. A0465]
gi|177651273|ref|ZP_02934104.1| acetoin utilization protein AcuC [Bacillus anthracis str. A0174]
gi|190568293|ref|ZP_03021201.1| acetoin utilization protein AcuC [Bacillus anthracis str.
Tsiankovskii-I]
gi|218905895|ref|YP_002453729.1| acetoin utilization protein AcuC [Bacillus cereus AH820]
gi|227817458|ref|YP_002817467.1| acetoin utilization protein AcuC [Bacillus anthracis str. CDC 684]
gi|229600740|ref|YP_002868947.1| acetoin utilization protein AcuC [Bacillus anthracis str. A0248]
gi|254687477|ref|ZP_05151333.1| acetoin utilization protein AcuC [Bacillus anthracis str.
CNEVA-9066]
gi|254736778|ref|ZP_05194484.1| acetoin utilization protein AcuC [Bacillus anthracis str. Western
North America USA6153]
gi|254741815|ref|ZP_05199502.1| acetoin utilization protein AcuC [Bacillus anthracis str. Kruger B]
gi|254754587|ref|ZP_05206622.1| acetoin utilization protein AcuC [Bacillus anthracis str. Vollum]
gi|254757419|ref|ZP_05209446.1| acetoin utilization protein AcuC [Bacillus anthracis str. Australia
94]
gi|421511203|ref|ZP_15958081.1| acetoin utilization protein AcuC [Bacillus anthracis str. UR-1]
gi|421639282|ref|ZP_16079875.1| acetoin utilization protein AcuC [Bacillus anthracis str. BF1]
gi|30259414|gb|AAP28602.1| acetoin utilization protein AcuC [Bacillus anthracis str. Ames]
gi|47505360|gb|AAT34036.1| acetoin utilization protein AcuC [Bacillus anthracis str. 'Ames
Ancestor']
gi|49181484|gb|AAT56860.1| acetoin utilization protein AcuC [Bacillus anthracis str. Sterne]
gi|164714463|gb|EDR19982.1| acetoin utilization protein AcuC [Bacillus anthracis str. A0488]
gi|167513896|gb|EDR89264.1| acetoin utilization protein AcuC [Bacillus anthracis str. A0193]
gi|167530745|gb|EDR93447.1| acetoin utilization protein AcuC [Bacillus anthracis str. A0442]
gi|170670165|gb|EDT20905.1| acetoin utilization protein AcuC [Bacillus anthracis str. A0465]
gi|172083099|gb|EDT68161.1| acetoin utilization protein AcuC [Bacillus anthracis str. A0174]
gi|190560549|gb|EDV14526.1| acetoin utilization protein AcuC [Bacillus anthracis str.
Tsiankovskii-I]
gi|218537946|gb|ACK90344.1| acetoin utilization protein AcuC [Bacillus cereus AH820]
gi|227006483|gb|ACP16226.1| acetoin utilization protein AcuC [Bacillus anthracis str. CDC 684]
gi|229265148|gb|ACQ46785.1| acetoin utilization protein AcuC [Bacillus anthracis str. A0248]
gi|401818776|gb|EJT17968.1| acetoin utilization protein AcuC [Bacillus anthracis str. UR-1]
gi|403393701|gb|EJY90944.1| acetoin utilization protein AcuC [Bacillus anthracis str. BF1]
Length = 388
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 20 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYIHTEEYINAVKRAGEGKLEKS 79
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 80 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 131
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 132 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 190
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 191 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLDSYRTVVKEVAAYFKPDII 250
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 251 LTQNGADAHYYDPL 264
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 107 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 165
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 166 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 197
>gi|423591354|ref|ZP_17567385.1| hypothetical protein IIG_00222 [Bacillus cereus VD048]
gi|401232722|gb|EJR39220.1| hypothetical protein IIG_00222 [Bacillus cereus VD048]
Length = 397
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L ++ FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKSGFISPSQIISPRMATDEEIAFIHTEEYINAVKLAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A ++ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVISGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYNYSFNVPLDAFTEDESFLDSYRTVVKEVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAH-----QFSDYY 72
++N+GGG HH K GFC Y D S+ +K + Q K + +D DAH Q+S Y
Sbjct: 132 ALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYD 190
Query: 73 FPSAHSIKRKRKVEFL 88
P+ +I +L
Sbjct: 191 DPNVCTISLHETGRYL 206
>gi|423389025|ref|ZP_17366251.1| hypothetical protein ICG_00873 [Bacillus cereus BAG1X1-3]
gi|423417418|ref|ZP_17394507.1| hypothetical protein IE3_00890 [Bacillus cereus BAG3X2-1]
gi|401107697|gb|EJQ15642.1| hypothetical protein IE3_00890 [Bacillus cereus BAG3X2-1]
gi|401642300|gb|EJS60011.1| hypothetical protein ICG_00873 [Bacillus cereus BAG1X1-3]
Length = 397
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L ++ FI+ +I P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKSGFISPSQVIAPRMATDEEIAYVHTEEYINAVKRAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYNYSFNVPLDAFTEDESFLDSYRTVVKEVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|47565084|ref|ZP_00236127.1| acetoin utilization protein AcuC [Bacillus cereus G9241]
gi|47557870|gb|EAL16195.1| acetoin utilization protein AcuC [Bacillus cereus G9241]
Length = 388
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 20 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYIHTEEYINAVKRAGEGKLEKS 79
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 80 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 131
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ I +
Sbjct: 132 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNICPISL 190
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 191 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLDSYRTVVKEVAAYFKPDII 250
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 251 LTQNGADAHYYDPL 264
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 107 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 165
Query: 62 DLDAHQ 67
D DAH
Sbjct: 166 DTDAHH 171
>gi|52140837|ref|YP_085992.1| acetoin utilization protein [Bacillus cereus E33L]
gi|51974306|gb|AAU15856.1| acetoin utilization protein [Bacillus cereus E33L]
Length = 388
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 112/254 (44%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 20 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYIHTEEYINAVKRAGEGKLEKS 79
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 80 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 131
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 132 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 190
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ ++ F PDII
Sbjct: 191 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLDSYRTVVKEVAAYFKPDII 250
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 251 LTQNGADAHYYDPL 264
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 107 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 165
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 166 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 197
>gi|225866649|ref|YP_002752027.1| acetoin utilization protein AcuC [Bacillus cereus 03BB102]
gi|225789606|gb|ACO29823.1| acetoin utilization protein AcuC [Bacillus cereus 03BB102]
Length = 388
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 111/254 (43%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 20 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYIHTEEYINAVKRAGEGKLEKS 79
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 80 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 131
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 132 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 190
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ + F PDII
Sbjct: 191 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLDSYRTVVREVAAYFKPDII 250
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 251 LTQNGADAHYYDPL 264
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 107 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 165
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 166 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 197
>gi|381211806|ref|ZP_09918877.1| acetoin utilization protein [Lentibacillus sp. Grbi]
Length = 388
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 123/290 (42%), Gaps = 46/290 (15%)
Query: 114 VYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQ 173
VY E+ + F + HPF+ K+ L K + L + ++ D+II+P++ +E++
Sbjct: 8 VYSNEFLDYHFHSD--HPFNQKR-----VLLTKDL---LEKTNLLSADHIIKPRKAAEDE 57
Query: 174 LLIAHTEKYLKSLK----------WSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGG 223
L + H Y+ ++K S +E P+ PN YL VGG
Sbjct: 58 LALIHDRAYINAVKKAGTENLTENESMEYGIGTEDTPVF--PNMHEASTYL------VGG 109
Query: 224 TLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 281
TL A L + ++N+GGG HH + K GFC Y D ++ +K + + + + VD
Sbjct: 110 TLSAVDSVLQGKAAHALNLGGGLHHGFKRKASGFCIYNDGAIAIKYIREKYDLKV-LYVD 168
Query: 282 LDAHQGNGYEKDFMNETRIFIMETCITS---------------KAKEAIRCRIELAPYTE 326
DAH G+G + F ++ + + T K + + +TE
Sbjct: 169 TDAHHGDGVQWAFYDDPNVCTLSIHETGRYLFPGTGHINERGIKEGHGFSFNLPIDAFTE 228
Query: 327 DQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIR 376
D+ ++ E + F PD+I+ G D DPL L + + R
Sbjct: 229 DESFIHVYETAFRQIADYFRPDVILTQNGADAHAYDPLTHLCATTETFER 278
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L + ++N+GGG HH + K GFC Y D ++ +K + + + + V
Sbjct: 109 GTLSAVDSVLQGKAAHALNLGGGLHHGFKRKASGFCIYNDGAIAIKYIREKYDLKV-LYV 167
Query: 62 DLDAHQ 67
D DAH
Sbjct: 168 DTDAHH 173
>gi|423355153|ref|ZP_17332778.1| hypothetical protein IAU_03227 [Bacillus cereus IS075]
gi|423373377|ref|ZP_17350716.1| hypothetical protein IC5_02432 [Bacillus cereus AND1407]
gi|423570899|ref|ZP_17547144.1| hypothetical protein II7_04120 [Bacillus cereus MSX-A12]
gi|423603654|ref|ZP_17579547.1| hypothetical protein IIK_00235 [Bacillus cereus VD102]
gi|401085330|gb|EJP93573.1| hypothetical protein IAU_03227 [Bacillus cereus IS075]
gi|401096341|gb|EJQ04388.1| hypothetical protein IC5_02432 [Bacillus cereus AND1407]
gi|401203526|gb|EJR10365.1| hypothetical protein II7_04120 [Bacillus cereus MSX-A12]
gi|401246418|gb|EJR52765.1| hypothetical protein IIK_00235 [Bacillus cereus VD102]
Length = 397
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 111/254 (43%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYIHTEEYINAVKRAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ + F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLDSYRTVVREVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|206978111|ref|ZP_03238994.1| acetoin utilization protein AcuC [Bacillus cereus H3081.97]
gi|301056175|ref|YP_003794386.1| acetoin utilization protein [Bacillus cereus biovar anthracis str.
CI]
gi|206743647|gb|EDZ55071.1| acetoin utilization protein AcuC [Bacillus cereus H3081.97]
gi|300378344|gb|ADK07248.1| acetoin utilization protein [Bacillus cereus biovar anthracis str.
CI]
Length = 388
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 111/254 (43%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 20 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYIHTEEYINAVKRAGEGKLEKS 79
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 80 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 131
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 132 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 190
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ + F PDII
Sbjct: 191 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLDSYRTVVREVAAYFKPDII 250
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 251 LTQNGADAHYYDPL 264
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 107 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 165
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 166 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 197
>gi|384182477|ref|YP_005568239.1| acetoin utilization protein AcuC [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324328561|gb|ADY23821.1| acetoin utilization protein AcuC [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 388
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 111/254 (43%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 20 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYIHTEEYINAVKRAGEGKLEKS 79
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 80 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 131
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 132 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 190
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ + F PDII
Sbjct: 191 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLDSYRTVVREVAAYFKPDII 250
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 251 LTQNGADAHYYDPL 264
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 107 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 165
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 166 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 197
>gi|423400479|ref|ZP_17377652.1| hypothetical protein ICW_00877 [Bacillus cereus BAG2X1-2]
gi|423457084|ref|ZP_17433881.1| hypothetical protein IEI_00224 [Bacillus cereus BAG5X2-1]
gi|423478815|ref|ZP_17455530.1| hypothetical protein IEO_04273 [Bacillus cereus BAG6X1-1]
gi|401148861|gb|EJQ56344.1| hypothetical protein IEI_00224 [Bacillus cereus BAG5X2-1]
gi|401655203|gb|EJS72737.1| hypothetical protein ICW_00877 [Bacillus cereus BAG2X1-2]
gi|402426846|gb|EJV58961.1| hypothetical protein IEO_04273 [Bacillus cereus BAG6X1-1]
Length = 397
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 111/254 (43%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 29 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYVHTEEYINAVKRAGEGKLEKS 88
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 89 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 140
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 141 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 199
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L ++ F PDII
Sbjct: 200 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLNSYRTVVKEVAAYFKPDII 259
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 260 LTQNGADAHYYDPL 273
Score = 44.7 bits (104), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 116 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 174
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 175 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 206
>gi|374632284|ref|ZP_09704658.1| deacetylase, histone deacetylase/acetoin utilization protein
[Metallosphaera yellowstonensis MK1]
gi|373526114|gb|EHP70894.1| deacetylase, histone deacetylase/acetoin utilization protein
[Metallosphaera yellowstonensis MK1]
Length = 350
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 132/309 (42%), Gaps = 37/309 (11%)
Query: 130 HPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS 189
HPF S + Y+ + F ++VE ++ P E+ L H+ +Y+ ++
Sbjct: 21 HPFKSLRESMARKYMEERGFFHVVE--------VVRPDPPEEDILTEVHSPEYVDFVR-- 70
Query: 190 FNVAAISEVCP-LVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGW--SINIGGGFHH 246
A+SE+ L+ + K V G++ G L RG+ S+N+GGG HH
Sbjct: 71 ----AMSELGEGLLDYGDTPAFKGVYESALMRVMGSV-TGIRLLARGYDHSVNLGGGLHH 125
Query: 247 ASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNET-------- 298
A + GFC + D+++ VK K + +VD+D H G+G + +
Sbjct: 126 AQRSAASGFCVFNDVAIAVKQ--AEKLLGRVAVVDIDGHHGDGTQALLYEDPKSLKVSLH 183
Query: 299 ---RIFIMETC----ITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIV 351
R F T I + + L P T D YL + + +L F PDIIV
Sbjct: 184 MYHRGFFPGTGNIDEIGEGEGRGLTVNVPLPPGTGDDAYLYAFDNVVIPALEKFKPDIIV 243
Query: 352 YNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRV-PIVMLTSGGY-LKQTARIIA 409
G D ++DPL L +S +G + + + + + I+ML GGY TAR+
Sbjct: 244 IQEGGDSHMSDPLVGLKLSTRGYLEVIKRIHSFSHNKSTGKILMLGGGGYDYDATARVWT 303
Query: 410 DSILNLADL 418
S L+ +
Sbjct: 304 ISTAELSGI 312
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 8 AGFLALRRGW--SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDA 65
G L RG+ S+N+GGG HHA + GFC + D+++ VK K + +VD+D
Sbjct: 104 TGIRLLARGYDHSVNLGGGLHHAQRSAASGFCVFNDVAIAVKQ--AEKLLGRVAVVDIDG 161
Query: 66 HQ 67
H
Sbjct: 162 HH 163
>gi|217962153|ref|YP_002340723.1| acetoin utilization protein AcuC [Bacillus cereus AH187]
gi|222098139|ref|YP_002532196.1| acetoin utilization protein [Bacillus cereus Q1]
gi|375286669|ref|YP_005107108.1| acetoin utilization protein AcuC [Bacillus cereus NC7401]
gi|217068269|gb|ACJ82519.1| acetoin utilization protein AcuC [Bacillus cereus AH187]
gi|221242197|gb|ACM14907.1| acetoin utilization protein [Bacillus cereus Q1]
gi|358355196|dbj|BAL20368.1| acetoin utilization protein AcuC [Bacillus cereus NC7401]
Length = 388
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 111/254 (43%), Gaps = 37/254 (14%)
Query: 139 HIFNYLWKHI-FNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS-------- 189
H FN L + ++ L + FI+ II P+ ++E++ HTE+Y+ ++K +
Sbjct: 20 HPFNQLRVTLTYDLLQKGGFISPSQIISPRMATDEEIAYIHTEEYINAVKRAGEGKLEKS 79
Query: 190 --FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEA--GFLALRRGWSINIGGGFH 245
+E P+ PN L VGGTL A L+ + ++N+GGG H
Sbjct: 80 IAMTYGLGTEDTPMF--PNMHEASALL------VGGTLTAVDAVLSGKVKHALNLGGGLH 131
Query: 246 HASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMET 305
H K GFC Y D S+ +K + Q K + +D DAH G+G + F ++ + +
Sbjct: 132 HGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYIDTDAHHGDGVQWSFYDDPNVCTISL 190
Query: 306 CITSK----AKEAIRCR-----------IELAPYTEDQHYLEKIEAGLERSLRSFCPDII 350
T + A+ R + L +TED+ +L+ + F PDII
Sbjct: 191 HETGRYLFPGTGAVNERGQGNGYSYSFNVPLDAFTEDESFLDSYRTVVREVAAYFKPDII 250
Query: 351 VYNAGTDVLLNDPL 364
+ G D DPL
Sbjct: 251 LTQNGADAHYYDPL 264
Score = 44.7 bits (104), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 GTLEA--GFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
GTL A L+ + ++N+GGG HH K GFC Y D S+ +K + Q K + +
Sbjct: 107 GTLTAVDAVLSGKVKHALNLGGGLHHGFRGKASGFCIYNDSSIAMKYI-QKKYGLRVLYI 165
Query: 62 DLDAH-----QFSDYYFPSAHSIKRKRKVEFL 88
D DAH Q+S Y P+ +I +L
Sbjct: 166 DTDAHHGDGVQWSFYDDPNVCTISLHETGRYL 197
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,875,506,463
Number of Sequences: 23463169
Number of extensions: 290539550
Number of successful extensions: 637607
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2530
Number of HSP's successfully gapped in prelim test: 2699
Number of HSP's that attempted gapping in prelim test: 622911
Number of HSP's gapped (non-prelim): 11890
length of query: 436
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 290
effective length of database: 8,933,572,693
effective search space: 2590736080970
effective search space used: 2590736080970
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 78 (34.7 bits)