BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8529
(436 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96DB2|HDA11_HUMAN Histone deacetylase 11 OS=Homo sapiens GN=HDAC11 PE=1 SV=1
Length = 347
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/331 (53%), Positives = 234/331 (70%), Gaps = 15/331 (4%)
Query: 99 TSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI 158
T++ + V WPIVY P YN+ F LEKLHPFD+ KW + N+L E K +
Sbjct: 4 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLL 55
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
+ ++E +E SEE LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R
Sbjct: 56 SDSMLVEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLR 115
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTA 277
GGT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A
Sbjct: 116 TQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRA 175
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYL 331
I+DLDAHQGNG+E+DFM++ R++IM+ AK+AIR ++EL TED YL
Sbjct: 176 TIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYL 235
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
+K+E +++SL+ PD++VYNAGTD+L D LG L+ISP GI++RDELVF R RRVP
Sbjct: 236 DKVERNIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVP 295
Query: 392 IVMLTSGGYLKQTARIIADSILNLADLGLIS 422
I+M+TSGGY K+TARIIADSILNL LGLI
Sbjct: 296 ILMVTSGGYQKRTARIIADSILNLFGLGLIG 326
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 120 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 179
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 180 LDAHQ 184
>sp|Q9GKU5|HDA11_MACFA Histone deacetylase 11 OS=Macaca fascicularis GN=HDAC11 PE=2 SV=2
Length = 347
Score = 364 bits (934), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/331 (53%), Positives = 233/331 (70%), Gaps = 15/331 (4%)
Query: 99 TSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFI 158
T++ + V WPIVY P YN+ F LEKLHPFD+ KW + N+L E K +
Sbjct: 4 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLL 55
Query: 159 TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMR 218
+ ++E +E SEE LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R
Sbjct: 56 SDSMLVEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLR 115
Query: 219 YHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTA 277
GGT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A
Sbjct: 116 TQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRA 175
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYL 331
I+DLDAHQGNG+E+DFM++ R++IM+ AK+AIR ++EL TED YL
Sbjct: 176 TIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYL 235
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
+K+E +E+SL+ PD++VYNAGTD+L D LG L+ISP GI++RDELVF R R VP
Sbjct: 236 DKVERNIEKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRHVP 295
Query: 392 IVMLTSGGYLKQTARIIADSILNLADLGLIS 422
I+M+TSGGY K+TARIIADSILNL LGLI
Sbjct: 296 ILMVTSGGYQKRTARIIADSILNLFGLGLIG 326
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 120 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 179
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 180 LDAHQ 184
>sp|Q91WA3|HDA11_MOUSE Histone deacetylase 11 OS=Mus musculus GN=Hdac11 PE=2 SV=1
Length = 347
Score = 363 bits (933), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 177/326 (54%), Positives = 230/326 (70%), Gaps = 15/326 (4%)
Query: 104 ESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNI 163
+ V + WPIVY P YN+ F LEKLHPFD+ KW + N+L E K ++ +
Sbjct: 9 QHVPEKRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFL--------KEEKLLSDGML 60
Query: 164 IEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGG 223
+E +E SEE LL+ HT +YL LKWSF VA I+E+ P++ +PN+ VQ+ LRP+R GG
Sbjct: 61 VEAREASEEDLLVVHTRRYLNELKWSFVVATITEIPPVIFLPNFLVQRKVLRPLRTQTGG 120
Query: 224 TLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVDL 282
T+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+DL
Sbjct: 121 TIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDL 180
Query: 283 DAHQGNGYEKDFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEA 336
DAHQGNG+E+DFM + R++IM+ AKEAIR ++EL TED+ YLEK+E
Sbjct: 181 DAHQGNGHERDFMGDKRVYIMDVYNRHIYPGDRFAKEAIRRKVELEWGTEDEEYLEKVER 240
Query: 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396
+ RSL+ PD++VYNAGTDVL D LG L+ISP GI++RDE+VF R +PI+M+T
Sbjct: 241 NVRRSLQEHLPDVVVYNAGTDVLEGDRLGGLSISPAGIVKRDEVVFRVVRAHDIPILMVT 300
Query: 397 SGGYLKQTARIIADSILNLADLGLIS 422
SGGY K+TARIIADSILNL DLGLI
Sbjct: 301 SGGYQKRTARIIADSILNLHDLGLIG 326
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS-KSISTAMIVD 62
GT+ AG LA+ RGW+IN+GGGFHH S +GGGFCAYADI+L +K LF+ + IS A I+D
Sbjct: 120 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 179
Query: 63 LDAHQ 67
LDAHQ
Sbjct: 180 LDAHQ 184
>sp|Q944K3|HDA2_ARATH Histone deacetylase 2 OS=Arabidopsis thaliana GN=HDA2 PE=1 SV=2
Length = 387
Score = 310 bits (795), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 155/319 (48%), Positives = 207/319 (64%), Gaps = 15/319 (4%)
Query: 113 IVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEE 172
I+Y Y++ F +EKLHPFDS KW + +L V F+ + I+EP E S+
Sbjct: 76 IIYSSSYDISFMGIEKLHPFDSSKWGRVCKFL--------VSDGFLEEKAIVEPLEASKI 127
Query: 173 QLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL 232
LL+ H+E YL SLK S VA I+EV P+ PN+ VQ+ L P R VGGT+ A LA
Sbjct: 128 DLLVVHSENYLNSLKSSATVARITEVAPVAFFPNFLVQQKVLYPFRKQVGGTILAAKLAT 187
Query: 233 RRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
RGW+INIGGGFHH + +GGGFCA+ADISL + F IS MI+DLDAHQGNG+E
Sbjct: 188 ERGWAINIGGGFHHCTAERGGGFCAFADISLCIHFAFLRLRISRVMIIDLDAHQGNGHET 247
Query: 293 DFMNETRIFIMET------CITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFC 346
D ++ R++I++ +A+ I ++E+ T YL K++ LE + R+F
Sbjct: 248 DLGDDNRVYILDMYNPEIYPFDYRARRFIDQKVEVMSGTTTDEYLRKLDEALEVASRNFQ 307
Query: 347 PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 406
P++++YNAGTD+L DPLGLL ISP GI RDE VF ARE+ +P+VMLTSGGY+K +AR
Sbjct: 308 PELVIYNAGTDILDGDPLGLLKISPDGITSRDEKVFRFAREKNIPLVMLTSGGYMKSSAR 367
Query: 407 IIADSILNLADLGLI-SRP 424
+IADSI NL+ GLI +RP
Sbjct: 368 VIADSIENLSRQGLIQTRP 386
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 46/64 (71%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ A LA RGW+INIGGGFHH + +GGGFCA+ADISL + F IS MI+DL
Sbjct: 178 GTILAAKLATERGWAINIGGGFHHCTAERGGGFCAFADISLCIHFAFLRLRISRVMIIDL 237
Query: 64 DAHQ 67
DAHQ
Sbjct: 238 DAHQ 241
>sp|P28606|Y1628_SYNP2 Uncharacterized protein SYNPCC7002_A1628 OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6)
GN=SYNPCC7002_A1628 PE=3 SV=2
Length = 300
Score = 108 bits (271), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 130/316 (41%), Gaps = 50/316 (15%)
Query: 111 WPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
+P+VY P+Y + + H F K++ + L +E I + + +PQ
Sbjct: 3 FPVVYHPDY---VTPIPEEHRFPMPKFRLLHGLL--------LEDGVIQPEQVYQPQLPD 51
Query: 171 EEQLLIAHTEKYLKS---------------LKWSFNVAAISEVCPLVAVPNYFVQKCYLR 215
L + H Y+ + L WS V VQ+
Sbjct: 52 RAWLELVHEPDYVTAYCQGTLTPKAQRRIGLPWSAGV----------------VQRTLTA 95
Query: 216 PMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS 275
VGGT+ LAL G + N GG HHA G GFC D+++ + + Q
Sbjct: 96 -----VGGTILTAQLALEHGLACNTAGGTHHAFPGYGSGFCILNDLAIATRTIQQRGLAQ 150
Query: 276 TAMIVDLDAHQGNGYEKDFMNETRIFIMET-CITSKAKEAIRCRIELA--PYTEDQHYLE 332
+IVDLD HQG+G F ++ +F C + + R ++L +D YL+
Sbjct: 151 RILIVDLDVHQGDGTAFIFQDDPTVFTFSMHCEVNFPSQKQRSDLDLGLPEGLDDDGYLQ 210
Query: 333 KIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPI 392
+ LE L PD++ Y+AG D + D LG LA++ G+ RR+ LV P+
Sbjct: 211 ILAHHLEDLLSQVKPDLVFYDAGVDTHVGDRLGKLAMTNTGLYRRERLVLSTCLAAGYPV 270
Query: 393 VMLTSGGYLKQTARII 408
+ GGY K ++
Sbjct: 271 ACVIGGGYAKNIHDLV 286
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 4 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDL 63
GT+ LAL G + N GG HHA G GFC D+++ + + Q +IVDL
Sbjct: 98 GTILTAQLALEHGLACNTAGGTHHAFPGYGSGFCILNDLAIATRTIQQRGLAQRILIVDL 157
Query: 64 DAHQFSDYYF-----PSAHSIKRKRKVEFLKERK 92
D HQ F P+ + +V F +++
Sbjct: 158 DVHQGDGTAFIFQDDPTVFTFSMHCEVNFPSQKQ 191
>sp|Q6GFX3|ACUC_STAAR Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MRSA252) GN=acuC PE=3 SV=1
Length = 389
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 136/300 (45%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ ++++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATDDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + ISE + N + + M H VGG L L + G ++N
Sbjct: 71 EAIKHASH-GIISEDEAMKYGLN-DEENGQFKHMHRHSATIVGGALTLADLIMS-GKALN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDSSFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ I+M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADTYTNGKIIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>sp|Q8NW34|ACUC_STAAW Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MW2) GN=acuC PE=3 SV=1
Length = 389
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ ++++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATDDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENSQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>sp|Q6G8J2|ACUC_STAAS Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MSSA476) GN=acuC PE=3 SV=1
Length = 389
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ ++++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATDDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENSQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>sp|Q5HF39|ACUC_STAAC Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
COL) GN=acuC PE=3 SV=1
Length = 389
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ ++++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATDDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + L + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + L + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYN-QRVLIIDTDAHH 176
>sp|P64376|ACUC_STAAN Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
N315) GN=acuC PE=1 SV=1
Length = 389
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 132/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ + ++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATGDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + + + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYIAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + + + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYIAKEYN-QRVLIIDTDAHH 176
>sp|P64375|ACUC_STAAM Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=acuC PE=3 SV=1
Length = 389
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 132/300 (44%), Gaps = 35/300 (11%)
Query: 124 FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
++ HPF+ + K L + A ++ + I++P+ + ++L++ H Y+
Sbjct: 19 YRFHDQHPFNQMRLKLTTELL--------LNANLLSPEQIVQPRIATGDELMLIHKYDYV 70
Query: 184 KSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGFLALRRGWSIN 239
+++K + + + + + + + M H VGG L L + G +N
Sbjct: 71 EAIKHASHGIISEDEAKKYGLND--EENGQFKHMHRHSATIVGGALTLADLIMS-GKVLN 127
Query: 240 ---IGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF-- 294
+GGG HHA + GFC Y DI++ + + + + +I+D DAH G+G + F
Sbjct: 128 GCHLGGGLHHAQPGRASGFCIYNDIAITAQYIAKEYN-QRVLIIDTDAHHGDGTQWSFYA 186
Query: 295 --------MNETRIFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERS 341
++ET F+ T + ++ + L PYTED +LE + +E
Sbjct: 187 DNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPV 246
Query: 342 LRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV-FMKARERRVPIVMLTSGGY 400
++SF PDII+ G D+ DPL L + + V ++ ++M GGY
Sbjct: 247 VKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HHA + GFC Y DI++ + + + + +I+D DAH
Sbjct: 130 HLGGGLHHAQPGRASGFCIYNDIAITAQYIAKEYN-QRVLIIDTDAHH 176
>sp|Q56195|ACUC_STAXY Acetoin utilization protein AcuC OS=Staphylococcus xylosus GN=acuC
PE=3 SV=1
Length = 385
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 128/287 (44%), Gaps = 28/287 (9%)
Query: 138 KHIFNYL-WKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKW-SFNVAAI 195
KH FN + K L+E + Q +II P+ ++++L + H Y+++++ S + +
Sbjct: 24 KHPFNQMRLKLTTELLMELGQLKQHHIISPRIATDDELSLIHAYDYIQAIRHASHGILSE 83
Query: 196 SEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAG--FLALRRGWSINIGGGFHHASE 249
+E +Q R M H VGG L ++ ++GGG HH+
Sbjct: 84 NEAKKYGLDGEDTLQ---FRMMHKHSARIVGGALNLADQIMSGTLTNGCHLGGGLHHSLP 140
Query: 250 TKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDF----------MNETR 299
+ GFC Y D+++ + L Q K + +D DAH G+G + F ++ET
Sbjct: 141 GRANGFCIYNDVAITISYLMQ-KYNQRVLCIDTDAHHGDGTQWSFYTNDQALIYSIHETG 199
Query: 300 IFIMETC--ITSKAKE---AIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNA 354
F+ T + E I L PYTEDQ +L+ + +E + SF PDIIV
Sbjct: 200 KFLFPGSGHYTERGAEKGFGYTVNIPLEPYTEDQSFLDVFKQTIEPVVASFKPDIIVSVH 259
Query: 355 GTDVLLNDPLGLLAISPQGIIRRDELVFMKARE-RRVPIVMLTSGGY 400
G DV DPL ++ + + +V A + ++M GGY
Sbjct: 260 GVDVHYLDPLTHMSCTLNTLYEIPYIVKSLADTYTQGKVIMFGGGGY 306
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 20 NIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++GGG HH+ + GFC Y D+++ + L Q K + +D DAH
Sbjct: 130 HLGGGLHHSLPGRANGFCIYNDVAITISYLMQ-KYNQRVLCIDTDAHH 176
>sp|P39067|ACUC_BACSU Acetoin utilization protein AcuC OS=Bacillus subtilis (strain 168)
GN=acuC PE=3 SV=1
Length = 387
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 115/276 (41%), Gaps = 30/276 (10%)
Query: 114 VYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQ 173
+Y P Y + F E HPF+ ++ ++ L K I + +I+ P+ SEE+
Sbjct: 7 IYSPSYQTYMFHQE--HPFNQQRVLLTYDLL-KTINAF-------DDGDIVTPRLASEEE 56
Query: 174 LLIAHTEKYLKSLKWSF--NVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAG--F 229
L + HT+ Y++++K + + A + + V VGGTL A
Sbjct: 57 LSLVHTDDYIQAVKLAGAGKLPAEEGESYGLGTEDTPVFAGMHEAASLLVGGTLTAADWV 116
Query: 230 LALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNG 289
++ + + N+GGG HH + GFC Y D ++ ++ + Q K + + +D DAH G+G
Sbjct: 117 MSGQALHAANLGGGLHHGFRGRASGFCIYNDSAVAIQYI-QKKYSARVLYIDTDAHHGDG 175
Query: 290 YEKDFMNETRIFIMETCIT---------------SKAKEAIRCRIELAPYTEDQHYLEKI 334
+ F + + + T S I L +TED +LE
Sbjct: 176 VQFTFYDNPDVCTLSIHETGRYLFPGTGQIQEKGSGKGYGYSFNIPLDAFTEDDSFLEAY 235
Query: 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAIS 370
F PD+I+ G D DPL L+ +
Sbjct: 236 RTAASEVAAYFEPDVIISQNGADAHYYDPLTHLSAT 271
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAH-----QFSDYY 72
+ N+GGG HH + GFC Y D ++ ++ + Q K + + +D DAH QF+ Y
Sbjct: 124 AANLGGGLHHGFRGRASGFCIYNDSAVAIQYI-QKKYSARVLYIDTDAHHGDGVQFTFYD 182
Query: 73 FP 74
P
Sbjct: 183 NP 184
>sp|O30107|Y130_ARCFU Uncharacterized protein AF_0130 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0130 PE=3 SV=1
Length = 359
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 121/280 (43%), Gaps = 38/280 (13%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVG 222
++EP + S E +L HTE+Y++ L+ I + +P + L G
Sbjct: 47 LLEPFKASLEDVLEVHTEEYVRFLEMESKKGGIIDFD--TNIPVGVFDRALLA-----AG 99
Query: 223 GTLEAGFLALRRGWS---INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMI 279
G + A L + I HHA G GFC +++++VK L + + I
Sbjct: 100 GAIRAAQAVLNKECENAFAMIRPPGHHAKPYIGAGFCYLNNMAIMVKWLLK-QGFERIAI 158
Query: 280 VDLDAHQGNGYEKDFMNETRIFIMET--------------CITSKAKEAIRCRIELAPYT 325
+D DAH G+G ++ F N+ R+ + T C T K E I L P T
Sbjct: 159 LDWDAHHGDGTQEIFYNDDRVLFISTHQMPLYPGTGYPEECGTGKG-EGYTVNIPLPPGT 217
Query: 326 EDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQG---IIRRDELVF 382
D+ Y+ I+ +E + F P I +AG D DP+ LA++ +G ++RR V
Sbjct: 218 GDEGYMMVIDEIIEPVVNEFKPQFIAISAGQDNHFTDPITSLALTARGYAEMMRR--AVA 275
Query: 383 MKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLIS 422
M + +V + GGY + A L +LG+I+
Sbjct: 276 MAEKHCDGRLVAVLEGGYSVEGA-------LPYTNLGIIA 308
>sp|Q09440|HDA2_CAEEL Putative histone deacetylase 2 OS=Caenorhabditis elegans GN=hda-2
PE=3 SV=1
Length = 507
Score = 72.0 bits (175), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 93/350 (26%), Positives = 153/350 (43%), Gaps = 67/350 (19%)
Query: 96 DEITSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEA 155
DEI EP + V + + Y +V F +LHP ++ + N L + +Y +
Sbjct: 16 DEII-EPDGADVKK-RNVAYYYHKDVGHFHYGQLHPMKPQRLV-VCNDL---VVSYEM-P 68
Query: 156 KFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKW---------------SFNVAAISEVCP 200
K++T ++E ++ + + HTE Y+ L+ FN I E CP
Sbjct: 69 KYMT---VVESPKLDAADISVFHTEDYVNFLQTVTPKLGLTMPDDVLRQFN---IGEDCP 122
Query: 201 LVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWS---INIGGGFHHASETKGGGFCA 257
+ A C L + GG++E G L + IN GG HHA +++ GFC
Sbjct: 123 IFAG---LWDYCTL-----YAGGSVE-GARRLNHKMNDIVINWPGGLHHAKKSEASGFCY 173
Query: 258 YADISL-LVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIF--------------- 301
DI L +++LL K + + +D+D H G+G ++ F N R+
Sbjct: 174 VNDIVLGILELLKYHKRV---LYIDIDIHHGDGVQEAFNNSDRVMTVSFHRFGQYFPGSG 230
Query: 302 -IMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLL 360
IM+ + AI + L D+ YL+ E+ + +F P+ IV G+D L
Sbjct: 231 SIMDKGVGPGKYFAIN--VPLMAAIRDEPYLKLFESVISGVEENFNPEAIVLQCGSDSLC 288
Query: 361 NDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY-LKQTARIIA 409
D LG A+S R + ++K+ + P+++L GGY L+ AR A
Sbjct: 289 EDRLGQFALSFNAHAR--AVKYVKSLGK--PLMVLGGGGYTLRNVARCWA 334
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 19 INIGGGFHHASETKGGGFCAYADISL-LVKLLFQSKSISTAMIVDLDAHQ 67
IN GG HHA +++ GFC DI L +++LL K + + +D+D H
Sbjct: 154 INWPGGLHHAKKSEASGFCYVNDIVLGILELLKYHKRV---LYIDIDIHH 200
>sp|O59702|CLR6_SCHPO Histone deacetylase clr6 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=clr6 PE=1 SV=1
Length = 405
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 129/320 (40%), Gaps = 55/320 (17%)
Query: 148 IFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSL--------------KWSFNVA 193
+ N +V + N+I P + + HT++Y++ L + FNV
Sbjct: 35 VHNLVVNYNLYEKLNVITPVRATRNDMTRCHTDEYIEFLWRVTPDTMEKFQPHQLKFNVG 94
Query: 194 AISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRG---WSINIGGGFHHASET 250
+ CP+ + + C + GG++ A L G +IN GG HHA +
Sbjct: 95 ---DDCPVF---DGLYEFCSIS-----AGGSIGAA-QELNSGNAEIAINWAGGLHHAKKR 142
Query: 251 KGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIF--------- 301
+ GFC DI+L L K + +D+D H G+G E+ F R+
Sbjct: 143 EASGFCYVNDIALAALELL--KYHQRVLYIDIDVHHGDGVEEFFYTTDRVMTCSFHKFGE 200
Query: 302 -------IMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNA 354
I +T I + A+ + L +D+ Y + + ++ F P+ ++
Sbjct: 201 YFPGTGHIKDTGIGTGKNYAV--NVPLRDGIDDESYESVFKPVISHIMQWFRPEAVILQC 258
Query: 355 GTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY-LKQTARIIADSIL 413
GTD L D LG +S +G + V + +P++ + GGY ++ AR+
Sbjct: 259 GTDSLAGDRLGCFNLSMKGHSMCVDFV----KSFNLPMICVGGGGYTVRNVARVWTYETG 314
Query: 414 NLADLGLISR-PYNIWFIYY 432
LA L PYN + YY
Sbjct: 315 LLAGEELDENLPYNDYLQYY 334
Score = 35.4 bits (80), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+IN GG HHA + + GFC DI+L L K + +D+D H
Sbjct: 129 AINWAGGLHHAKKREASGFCYVNDIALAALELL--KYHQRVLYIDIDVHH 176
>sp|P56517|HDAC1_CHICK Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1
Length = 480
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 134/336 (39%), Gaps = 59/336 (17%)
Query: 130 HPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLK-- 187
HP + + N L NY + K I P + + E++ H++ Y+K L+
Sbjct: 28 HPMKPHRIRMTHNLL----LNYGLYRKM----EIYRPHKANAEEMTKYHSDDYIKFLRSI 79
Query: 188 ------------WSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRG 235
FNV E CP+ + + C L GG++ A + L +
Sbjct: 80 RPDNMSEYSKQMQRFNVG---EDCPVF---DGLFEFCQLS-----AGGSV-ASAVKLNKQ 127
Query: 236 WS---INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
+ +N GG HHA +++ GFC DI L + L K + +D+D H G+G E+
Sbjct: 128 QTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELL--KYHQRVLYIDIDIHHGDGVEE 185
Query: 293 DFMNETRIFIME--------------TCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGL 338
F R+ + I + + L +D+ Y + +
Sbjct: 186 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVI 245
Query: 339 ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSG 398
+ + +F P +V G+D L D LG ++ +G + E V + +P++ML G
Sbjct: 246 SKVMETFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFV----KSFNLPMLMLGGG 301
Query: 399 GY-LKQTARIIADSILNLADLGLISR-PYNIWFIYY 432
GY ++ AR D + + PYN +F Y+
Sbjct: 302 GYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYF 337
Score = 35.4 bits (80), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++N GG HHA +++ GFC DI L + L K + +D+D H
Sbjct: 132 AVNWAGGLHHAKKSEASGFCYVNDIVLAILELL--KYHQRVLYIDIDIHH 179
>sp|B1H369|HDAC8_XENTR Histone deacetylase 8 OS=Xenopus tropicalis GN=hdac8 PE=2 SV=1
Length = 369
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 118/279 (42%), Gaps = 33/279 (11%)
Query: 152 LVEA-KFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQ 210
L+EA + + +++P+ S E++ HT+ YL+ L + L Y
Sbjct: 36 LIEAYGLLKEMRVVKPKVASMEEMAAFHTDSYLQHLHKVSEEGDNDDPETLEYGLGY--- 92
Query: 211 KCYLRPMRYH----VGG-TLEAG--FLALRRGWSINIGGGFHHASETKGGGFCAYADISL 263
C + Y VGG TL A +A + +IN GG+HHA + + GFC D L
Sbjct: 93 DCPITEGIYDYAAAVGGATLTAAEQLMAGKTRIAINWPGGWHHAKKDEASGFCYLNDAVL 152
Query: 264 LVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIME---------------TCIT 308
+L + + VD+D H G+G E F +++ + + I
Sbjct: 153 --GILKLREKFDRVLYVDMDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDIG 210
Query: 309 SKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLA 368
+ L +D+ Y + E L+ +F P+ +V G D + DP+
Sbjct: 211 LGKGRYYSVNVPLQDGIQDEKYYQICEGVLKEVFTTFNPEAVVLQLGADTIAGDPMCSFN 270
Query: 369 ISPQGIIRRDELVFMKARERRVPIVMLTSGGY-LKQTAR 406
++PQGI + + V + ++P ++L GGY L TAR
Sbjct: 271 MTPQGIGKCLKYVL----QWQLPTLILGGGGYHLPNTAR 305
Score = 32.3 bits (72), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 10 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+A + +IN GG+HHA + + GFC D L +L + + VD+D H
Sbjct: 118 LMAGKTRIAINWPGGWHHAKKDEASGFCYLNDAVL--GILKLREKFDRVLYVDMDLHH 173
>sp|Q5RAG0|HDAC1_PONAB Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1
Length = 482
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/315 (22%), Positives = 125/315 (39%), Gaps = 49/315 (15%)
Query: 150 NYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLK--------------WSFNVAAI 195
N L+ + I P + + E++ H++ Y+K L+ FNV
Sbjct: 40 NLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVG-- 97
Query: 196 SEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSI--NIGGGFHHASETKGG 253
E CP+ + + C L GG++ + ++ I N GG HHA +++
Sbjct: 98 -EDCPVF---DGLFEFCQLS-----TGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEAS 148
Query: 254 GFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIME--------- 304
GFC DI L + L K + +D+D H G+G E+ F R+ +
Sbjct: 149 GFCYVNDIVLAILELL--KYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFP 206
Query: 305 -----TCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVL 359
I + + L +D+ Y + + + + F P +V G+D L
Sbjct: 207 GTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSL 266
Query: 360 LNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY-LKQTARIIADSILNLADL 418
D LG ++ +G + E V + +P++ML GGY ++ AR D
Sbjct: 267 SGDRLGCFNLTIKGHAKCVEFV----KSFNLPMLMLGGGGYTIRNVARCWTYETAVALDT 322
Query: 419 GLISR-PYNIWFIYY 432
+ + PYN +F Y+
Sbjct: 323 EIPNELPYNDYFEYF 337
Score = 35.4 bits (80), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++N GG HHA +++ GFC DI L + L K + +D+D H
Sbjct: 132 AVNWAGGLHHAKKSEASGFCYVNDIVLAILELL--KYHQRVLYIDIDIHH 179
>sp|Q13547|HDAC1_HUMAN Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1
Length = 482
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/315 (22%), Positives = 125/315 (39%), Gaps = 49/315 (15%)
Query: 150 NYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLK--------------WSFNVAAI 195
N L+ + I P + + E++ H++ Y+K L+ FNV
Sbjct: 40 NLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVG-- 97
Query: 196 SEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSI--NIGGGFHHASETKGG 253
E CP+ + + C L GG++ + ++ I N GG HHA +++
Sbjct: 98 -EDCPVF---DGLFEFCQLS-----TGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEAS 148
Query: 254 GFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIME--------- 304
GFC DI L + L K + +D+D H G+G E+ F R+ +
Sbjct: 149 GFCYVNDIVLAILELL--KYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFP 206
Query: 305 -----TCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVL 359
I + + L +D+ Y + + + + F P +V G+D L
Sbjct: 207 GTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSL 266
Query: 360 LNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY-LKQTARIIADSILNLADL 418
D LG ++ +G + E V + +P++ML GGY ++ AR D
Sbjct: 267 SGDRLGCFNLTIKGHAKCVEFV----KSFNLPMLMLGGGGYTIRNVARCWTYETAVALDT 322
Query: 419 GLISR-PYNIWFIYY 432
+ + PYN +F Y+
Sbjct: 323 EIPNELPYNDYFEYF 337
Score = 35.4 bits (80), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++N GG HHA +++ GFC DI L + L K + +D+D H
Sbjct: 132 AVNWAGGLHHAKKSEASGFCYVNDIVLAILELL--KYHQRVLYIDIDIHH 179
>sp|Q4QQW4|HDAC1_RAT Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1
Length = 482
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 127/316 (40%), Gaps = 51/316 (16%)
Query: 150 NYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLK--------------WSFNVAAI 195
N L+ + I P + + E++ H++ Y+K L+ FNV
Sbjct: 40 NLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVG-- 97
Query: 196 SEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWS---INIGGGFHHASETKG 252
E CP+ + + C L GG++ A + L + + +N GG HHA +++
Sbjct: 98 -EDCPVF---DGLFEFCQLS-----TGGSV-ASAVKLNKQQTDIAVNWAGGLHHAKKSEA 147
Query: 253 GGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIME-------- 304
GFC DI L + L K + +D+D H G+G E+ F R+ +
Sbjct: 148 SGFCYVNDIVLAILELL--KYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYF 205
Query: 305 ------TCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDV 358
I + + L +D+ Y + + + + F P +V G+D
Sbjct: 206 PGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDS 265
Query: 359 LLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY-LKQTARIIADSILNLAD 417
L D LG ++ +G + E V + +P++ML GGY ++ AR D
Sbjct: 266 LSGDRLGCFNLTIKGHAKCVEFV----KSFNLPMLMLGGGGYTIRNVARCWTYETAVALD 321
Query: 418 LGLISR-PYNIWFIYY 432
+ + PYN +F Y+
Sbjct: 322 TEIPNELPYNDYFEYF 337
Score = 35.4 bits (80), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++N GG HHA +++ GFC DI L + L K + +D+D H
Sbjct: 132 AVNWAGGLHHAKKSEASGFCYVNDIVLAILELL--KYHQRVLYIDIDIHH 179
>sp|Q32PJ8|HDAC1_BOVIN Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1
Length = 482
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/315 (22%), Positives = 125/315 (39%), Gaps = 49/315 (15%)
Query: 150 NYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLK--------------WSFNVAAI 195
N L+ + I P + + E++ H++ Y+K L+ FNV
Sbjct: 40 NLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVG-- 97
Query: 196 SEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSI--NIGGGFHHASETKGG 253
E CP+ + + C L GG++ + ++ I N GG HHA +++
Sbjct: 98 -EDCPVF---DGLFEFCQLS-----TGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEAS 148
Query: 254 GFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIME--------- 304
GFC DI L + L K + +D+D H G+G E+ F R+ +
Sbjct: 149 GFCYVNDIVLAILELL--KYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFP 206
Query: 305 -----TCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVL 359
I + + L +D+ Y + + + + F P +V G+D L
Sbjct: 207 GTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSL 266
Query: 360 LNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY-LKQTARIIADSILNLADL 418
D LG ++ +G + E V + +P++ML GGY ++ AR D
Sbjct: 267 SGDRLGCFNLTIKGHAKCVEFV----KSFNLPMLMLGGGGYTIRNVARCWTYETAVALDT 322
Query: 419 GLISR-PYNIWFIYY 432
+ + PYN +F Y+
Sbjct: 323 EIPNELPYNDYFEYF 337
Score = 35.4 bits (80), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++N GG HHA +++ GFC DI L + L K + +D+D H
Sbjct: 132 AVNWAGGLHHAKKSEASGFCYVNDIVLAILELL--KYHQRVLYIDIDIHH 179
>sp|O09106|HDAC1_MOUSE Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1
Length = 482
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 126/315 (40%), Gaps = 49/315 (15%)
Query: 150 NYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLK--------------WSFNVAAI 195
N L+ + I P + + E++ H++ Y+K L+ FNV
Sbjct: 40 NLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVG-- 97
Query: 196 SEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRR--GWSINIGGGFHHASETKGG 253
E CP+ + + C L GG++ + ++ ++N GG HHA +++
Sbjct: 98 -EDCPVF---DGLFEFCQLS-----TGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEAS 148
Query: 254 GFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIME--------- 304
GFC DI L + L K + +D+D H G+G E+ F R+ +
Sbjct: 149 GFCYVNDIVLAILELL--KYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFP 206
Query: 305 -----TCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVL 359
I + + L +D+ Y + + + + F P +V G+D L
Sbjct: 207 GTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSL 266
Query: 360 LNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY-LKQTARIIADSILNLADL 418
D LG ++ +G + E V + +P++ML GGY ++ AR D
Sbjct: 267 SGDRLGCFNLTIKGHAKCVEFV----KSFNLPMLMLGGGGYTIRNVARCWTYETAVALDT 322
Query: 419 GLISR-PYNIWFIYY 432
+ + PYN +F Y+
Sbjct: 323 EIPNELPYNDYFEYF 337
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
++N GG HHA +++ GFC DI L + L K + +D+D H
Sbjct: 132 AVNWAGGLHHAKKSEASGFCYVNDIVLAILELL--KYHQRVLYIDIDIHH 179
>sp|O42227|HDA1B_XENLA Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-b PE=1
SV=1
Length = 480
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 125/318 (39%), Gaps = 55/318 (17%)
Query: 150 NYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLK--------------WSFNVAAI 195
N L+ + I P + S E++ H++ Y+K L+ FNV
Sbjct: 40 NLLLNYGLYRKMEIYRPHKASAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVG-- 97
Query: 196 SEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRR--GWSINIGGGFHHASETKGG 253
E CP+ + + C L GG++ + ++ S+N GG HHA +++
Sbjct: 98 -EDCPVF---DGLFEFCQLS-----TGGSVASAVKLNKQQTDISVNWSGGLHHAKKSEAS 148
Query: 254 GFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIME--------- 304
GFC DI L + L K + +D+D H G+G E+ F R+ +
Sbjct: 149 GFCYVNDIVLAILELL--KYHQRVVYIDIDIHHGDGVEEAFYTTDRVMSVSFHKYGEYFP 206
Query: 305 -----TCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVL 359
I + + L +D+ Y + + + + F P +V G D L
Sbjct: 207 GTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMTKVMEMFQPSAVVLQCGADSL 266
Query: 360 LNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLG 419
D LG ++ +G + E + + +P++ML GGY T R +A +
Sbjct: 267 SGDRLGCFNLTIKGHAKCVEFI----KTFNLPMLMLGGGGY---TIRNVARCWTYETAVA 319
Query: 420 LISR-----PYNIWFIYY 432
L S PYN +F Y+
Sbjct: 320 LDSEIPNELPYNDYFEYF 337
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
S+N GG HHA +++ GFC DI L + L K + +D+D H
Sbjct: 132 SVNWSGGLHHAKKSEASGFCYVNDIVLAILELL--KYHQRVVYIDIDIHH 179
>sp|Q9FML2|HDA6_ARATH Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1
Length = 471
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 30/236 (12%)
Query: 218 RYHVGGTLEAGFLALRRGW--SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS 275
R GG++ A R+ +IN GGG HHA +++ GFC DI L + L K
Sbjct: 123 RASAGGSIGAAVKLNRQDADIAINWGGGLHHAKKSEASGFCYVNDIVLGILELL--KMFK 180
Query: 276 TAMIVDLDAHQGNGYEKDFMNETRIFIME--------------TCITSKAKEAIRCRIEL 321
+ +D+D H G+G E+ F R+ + + ++ + + L
Sbjct: 181 RVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDVGAEKGKYYALNVPL 240
Query: 322 APYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV 381
+D+ + +++ + + P+ +V G D L D LG +S +G D L
Sbjct: 241 NDGMDDESFRSLFRPLIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKG--HADCLR 298
Query: 382 FMKARERRVPIVMLTSGGY-LKQTARI----IADSILNLADLGLISRPYNIWFIYY 432
F+ R VP+++L GGY ++ AR A ++ D L PYN +F Y+
Sbjct: 299 FL--RSYNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKL---PYNEYFEYF 349
Score = 38.5 bits (88), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+IN GGG HHA +++ GFC DI L + L K + +D+D H
Sbjct: 144 AINWGGGLHHAKKSEASGFCYVNDIVLGILELL--KMFKRVLYIDIDVHH 191
>sp|Q94517|HDAC1_DROME Histone deacetylase Rpd3 OS=Drosophila melanogaster GN=Rpd3 PE=1
SV=2
Length = 521
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 134/336 (39%), Gaps = 59/336 (17%)
Query: 130 HPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLK-- 187
HP + + N L NY + K I P + + +++ H+++Y++ L+
Sbjct: 26 HPMKPHRIRMTHNLL----LNYGLYRKM----EIYRPHKATADEMTKFHSDEYVRFLRSI 77
Query: 188 ------------WSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRG 235
FNV E CP+ F Q GG++ A + L +
Sbjct: 78 RPDNMSEYNKQMQRFNVG---EDCPVFDGLYEFCQ--------LSAGGSVAAA-VKLNKQ 125
Query: 236 WS---INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
S IN GGG HHA +++ GFC DI L + L K + +D+D H G+G E+
Sbjct: 126 ASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELL--KYHQRVLYIDIDVHHGDGVEE 183
Query: 293 DFMNETRIFIME--------------TCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGL 338
F R+ + I + + I L +D Y +
Sbjct: 184 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDDAYESIFVPII 243
Query: 339 ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSG 398
+ + +F P +V G D L D LG ++ +G + E V ++ +P +M+ G
Sbjct: 244 SKVMETFQPAAVVLQCGADSLTGDRLGCFNLTVKGHGKCVEFV----KKYNLPFLMVGGG 299
Query: 399 GY-LKQTARI-IADSILNLADLGLISRPYNIWFIYY 432
GY ++ +R ++ + LA PYN +F Y+
Sbjct: 300 GYTIRNVSRCWTYETSVALAVEIANELPYNDYFEYF 335
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 19 INIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
IN GGG HHA +++ GFC DI L + L K + +D+D H
Sbjct: 131 INWGGGLHHAKKSEASGFCYVNDIVLGILELL--KYHQRVLYIDIDVHH 177
>sp|Q55FN5|HDA11_DICDI Type-1 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaA
PE=2 SV=1
Length = 495
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 133/357 (37%), Gaps = 59/357 (16%)
Query: 108 TRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQ 167
TR Y E H++ HP + + + + NY + K I P+
Sbjct: 3 TRKVSYFYDNEVGNHYYGPN--HPMKPHRMRMTHDL----VLNYGIYKKM----QIFRPR 52
Query: 168 EVSEEQLLIAHTEKYLKSLKW--------------SFNVAAISEVCPLVAVPNYFVQKCY 213
+ SE +L H++ Y+ LK FNV E CP+ F Q
Sbjct: 53 KASELELTNFHSDDYINFLKLVTPDNMHDYSKQLVKFNV---REDCPVFDGMYNFCQIS- 108
Query: 214 LRPMRYHVGGTLEAGFLALRR--GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQS 271
GG++ + +IN GG HHA +++ GFC DI L + L
Sbjct: 109 -------SGGSIGCAVKVNSKESDVAINWAGGLHHAKKSEASGFCYTNDIVLSILELL-- 159
Query: 272 KSISTAMIVDLDAHQGNGYEKDFMNETRIFIME--------------TCITSKAKEAIRC 317
K + +D+D H G+G E+ F R+ + I + +
Sbjct: 160 KHHERVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGDYFPGTGDVKDIGADKGKYYSL 219
Query: 318 RIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRR 377
L +D+ Y + + + P +V G D L D LG ++ +G +
Sbjct: 220 NFPLKDGIDDESYQSIFRPIIRSVMDFYRPGAVVIQCGADSLTGDRLGCFNLTLRGHAQC 279
Query: 378 DELVFMKARERRVPIVMLTSGGY-LKQTARIIADSILNLADLGLISR-PYNIWFIYY 432
E F+K+ VP+V+L GGY +K AR L D L PYN + YY
Sbjct: 280 IE--FLKS--FNVPLVVLGGGGYTIKNVARCWTYETSILVDSELKDELPYNDYLEYY 332
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 25/124 (20%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISL-LVKLLFQSKSI------------------STA 58
+IN GG HHA +++ GFC DI L +++LL + + +T
Sbjct: 127 AINWAGGLHHAKKSEASGFCYTNDIVLSILELLKHHERVLYIDIDIHHGDGVEEAFYTTD 186
Query: 59 MIVDLDAHQFSDYYFPSAHSIKR--KRKVEFLKERKALEDEITSEPQESV---VTRPWPI 113
++ + H++ D YFP +K K ++ L+D I E +S+ + R
Sbjct: 187 RVMTVSFHKYGD-YFPGTGDVKDIGADKGKYYSLNFPLKDGIDDESYQSIFRPIIRSVMD 245
Query: 114 VYRP 117
YRP
Sbjct: 246 FYRP 249
>sp|Q55BW2|HDA12_DICDI Histone deacetylase B OS=Dictyostelium discoideum GN=hdaB PE=2 SV=1
Length = 422
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 132/315 (41%), Gaps = 47/315 (14%)
Query: 148 IFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLK---------W-SFNVAAISE 197
+ NY + K ++ + + E +L H+E Y+ L+ W I E
Sbjct: 46 VLNYGLHKKM----HLYKARPADAEDMLKFHSEDYVDFLERVTPENINEWKDVKRFHIGE 101
Query: 198 VCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGW--SINIGGGFHHASETKGGGF 255
CP+ P + C + + GG++E R + +IN GG HHA + + GF
Sbjct: 102 DCPVF--PGLY-DYCSI-----YSGGSIEGALKLNHRMYDIAINWSGGLHHARKDEASGF 153
Query: 256 CAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIME----------- 304
C DI L + L K + + +D+D H G+G ++ F R+ +
Sbjct: 154 CYVNDIVLAILELL--KFHARVLYIDIDVHHGDGVQEAFYLTDRVMTVSFHKFGGDFFPG 211
Query: 305 ----TCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLL 360
I +K + + LA +D++YL + ++ + + P +IV G D L
Sbjct: 212 TGDIDEIGAKTGKLYSVNVPLADGIDDKNYLNIFKPVIQGVMDYYRPSVIVLQCGADSLR 271
Query: 361 NDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY-LKQTARIIADSILNLADLG 419
D LG ++ +G + + F+K+ +P ++L GGY ++ AR D
Sbjct: 272 FDRLGCFNLTIKG--HAECVRFVKS--FNIPTLVLGGGGYTVRNVARCWTYETSVCVDTE 327
Query: 420 LISR-PYNIWFIYYT 433
+ + PYN + +Y+
Sbjct: 328 VNNELPYNDYIQFYS 342
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 4 GTLEAGFLALRRGW--SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 61
G++E R + +IN GG HHA + + GFC DI L + L K + + +
Sbjct: 119 GSIEGALKLNHRMYDIAINWSGGLHHARKDEASGFCYVNDIVLAILELL--KFHARVLYI 176
Query: 62 DLDAHQ 67
D+D H
Sbjct: 177 DIDVHH 182
>sp|B1WC68|HDAC8_RAT Histone deacetylase 8 OS=Rattus norvegicus GN=Hdac8 PE=2 SV=1
Length = 377
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 133/339 (39%), Gaps = 56/339 (16%)
Query: 97 EITSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAK 156
EI EP S + P +Y PEY L K+ S + + L+EA
Sbjct: 2 EIPEEPANSGHSLPPVYIYSPEYVSICDSLVKVPKRAS-------------MVHSLIEAY 48
Query: 157 FI-TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVA----------AISEVCPLVAVP 205
+ Q I++P+ S E++ HT+ YL+ L+ + CP A
Sbjct: 49 ALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSIEYGLGYDCP--ATE 106
Query: 206 NYFVQKCYLRPMRYHVGGTLEAG--FLALRRGWSINIGGGFHHASETKGGGFCAYADISL 263
F + GGT+ A + + +IN GG+HHA + + GFC D L
Sbjct: 107 GIFDYAAAIG------GGTITAAQCLIDGKCKVAINWSGGWHHAKKDEASGFCYLNDAVL 160
Query: 264 LVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIME---------------TCIT 308
+L + + VDLD H G+G E F +++ + + +
Sbjct: 161 --GILRLRRKFDRILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDMSDVG 218
Query: 309 SKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLA 368
+ + +D+ Y E+ L+ ++F P +V G D + DP+
Sbjct: 219 LGKGRYYSVNVPIQDGIQDEKYYHICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFN 278
Query: 369 ISPQGIIRRDELVFMKARERRVPIVMLTSGGY-LKQTAR 406
++P GI + + V + ++ ++L GGY L TAR
Sbjct: 279 MTPVGIGKCLKYVL----QWQLATLILGGGGYNLANTAR 313
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+IN GG+HHA + + GFC D L +L + + VDLD H
Sbjct: 134 AINWSGGWHHAKKDEASGFCYLNDAVL--GILRLRRKFDRILYVDLDLHH 181
>sp|P32561|RPD3_YEAST Histone deacetylase RPD3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPD3 PE=1 SV=1
Length = 433
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 101/235 (42%), Gaps = 36/235 (15%)
Query: 222 GGTLEAGFLALRRG---WSINIGGGFHHASETKGGGFCAYADISL-LVKLLFQSKSISTA 277
GG++E G L RG ++N GG HHA +++ GFC DI L +++LL +
Sbjct: 125 GGSME-GAARLNRGKCDVAVNYAGGLHHAKKSEASGFCYLNDIVLGIIELLRYHPRV--- 180
Query: 278 MIVDLDAHQGNGYEKDFMNETRIFIMETC-----------------ITSKAKEAIRCRIE 320
+ +D+D H G+G E+ F R+ TC I A + +
Sbjct: 181 LYIDIDVHHGDGVEEAFYTTDRVM---TCSFHKYGEFFPGTGELRDIGVGAGKNYAVNVP 237
Query: 321 LAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDEL 380
L +D Y E +++ + + P +V G D L D LG +S +G
Sbjct: 238 LRDGIDDATYRSVFEPVIKKIMEWYQPSAVVLQCGGDSLSGDRLGCFNLSMEGHANCVNY 297
Query: 381 VFMKARERRVPIVMLTSGGY-LKQTARI--IADSILNLADLGLISRPYNIWFIYY 432
V + +P++++ GGY ++ AR +LN L PYN ++ YY
Sbjct: 298 V----KSFGIPMMVVGGGGYTMRNVARTWCFETGLLNNVVLDK-DLPYNEYYEYY 347
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 4 GTLEAGFLALRRG---WSINIGGGFHHASETKGGGFCAYADISL-LVKLLFQSKSISTAM 59
G++E G L RG ++N GG HHA +++ GFC DI L +++LL + +
Sbjct: 126 GSME-GAARLNRGKCDVAVNYAGGLHHAKKSEASGFCYLNDIVLGIIELLRYHPRV---L 181
Query: 60 IVDLDAHQ 67
+D+D H
Sbjct: 182 YIDIDVHH 189
>sp|Q8VH37|HDAC8_MOUSE Histone deacetylase 8 OS=Mus musculus GN=Hdac8 PE=1 SV=2
Length = 377
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 133/339 (39%), Gaps = 56/339 (16%)
Query: 97 EITSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAK 156
E+ EP S + P +Y PEY L K+ S + + L+EA
Sbjct: 2 EMPEEPANSGHSLPPVYIYSPEYVSICDSLVKVPKRAS-------------MVHSLIEAY 48
Query: 157 FI-TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVA----------AISEVCPLVAVP 205
+ Q I++P+ S E++ HT+ YL+ L+ + CP A
Sbjct: 49 ALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSIEYGLGYDCP--ATE 106
Query: 206 NYFVQKCYLRPMRYHVGGTLEAG--FLALRRGWSINIGGGFHHASETKGGGFCAYADISL 263
F + GGT+ A + + +IN GG+HHA + + GFC D L
Sbjct: 107 GIFDYAAAIG------GGTITAAQCLIDGKCKVAINWSGGWHHAKKDEASGFCYLNDAVL 160
Query: 264 LVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIME---------------TCIT 308
+L + + VDLD H G+G E F +++ + + +
Sbjct: 161 --GILRLRRKFDRILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDMSDVG 218
Query: 309 SKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLA 368
+ + +D+ Y E+ L+ ++F P +V G D + DP+
Sbjct: 219 LGKGRYYSVNVPIQDGIQDEKYYHICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFN 278
Query: 369 ISPQGIIRRDELVFMKARERRVPIVMLTSGGY-LKQTAR 406
++P GI + + V + ++ ++L GGY L TAR
Sbjct: 279 MTPVGIGKCLKYVL----QWQLATLILGGGGYNLANTAR 313
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+IN GG+HHA + + GFC D L +L + + VDLD H
Sbjct: 134 AINWSGGWHHAKKDEASGFCYLNDAVL--GILRLRRKFDRILYVDLDLHH 181
>sp|O27262|Y1194_METTH Uncharacterized protein MTH_1194 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1194 PE=3 SV=1
Length = 331
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 95/232 (40%), Gaps = 36/232 (15%)
Query: 164 IEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHV-- 221
+EP + +L+ H+ +++ L+ + Y+ P + V
Sbjct: 41 VEPGMAGIDDILMVHSSTHVEYLEVFAGRGG-----------GWLDYDTYMTPESFSVAR 89
Query: 222 ---GGTLEAGFLALRRGWSINIG-GGFHHASETKGGGFCAYADISLLVKLLFQSKSISTA 277
GG + A ALR GWS ++G HHA+ + GFC + +I++ ++ ++ +S
Sbjct: 90 LSAGGAMLAAEEALRDGWSYSLGRPPGHHATYDRSMGFCIFNNIAIAIEHARRNLGVSRP 149
Query: 278 MIVDLDAHQGNGYEKDFMNETRI-----------------FIMETCITSKAKEAIRCRIE 320
+++D D H GNG F + + FI ET S E I
Sbjct: 150 LVLDFDVHHGNGTSSIFYRDRDVMYISIHQDPRTLFPGTGFIDETG--SGEGEGFNLNIP 207
Query: 321 LAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQ 372
+ + ++ YL + L L F PD+I +AG D DPL + + +
Sbjct: 208 MPRGSGNREYLWILGMILPAVLEGFRPDMIFVSAGFDAHRRDPLAEIMVDEE 259
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 4 GTLEAGFLALRRGWSINIG-GGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVD 62
G + A ALR GWS ++G HHA+ + GFC + +I++ ++ ++ +S +++D
Sbjct: 94 GAMLAAEEALRDGWSYSLGRPPGHHATYDRSMGFCIFNNIAIAIEHARRNLGVSRPLVLD 153
Query: 63 LDAHQ 67
D H
Sbjct: 154 FDVHH 158
>sp|Q6GPA7|HDAC8_XENLA Histone deacetylase 8 OS=Xenopus laevis GN=hdac8 PE=2 SV=1
Length = 325
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 110/267 (41%), Gaps = 32/267 (11%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH-- 220
+++P+ S E++ HT+ YL+ L + L Y C + Y
Sbjct: 4 VVKPKVASMEEMAAFHTDAYLQHLHKVSEEGDNDDPETLEYGLGY---DCPITEGIYDYA 60
Query: 221 --VGG-TLEAG--FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSIS 275
VGG TL A + + ++N GG+HHA + + GFC D L +L +
Sbjct: 61 AAVGGATLTAAEQLIEGKTRIAVNWPGGWHHAKKDEASGFCYLNDAVL--GILKLREKFD 118
Query: 276 TAMIVDLDAHQGNGYEKDFMNETRIFIME---------------TCITSKAKEAIRCRIE 320
+ VD+D H G+G E F +++ + + I +
Sbjct: 119 RVLYVDMDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDIGLGKGRYYSINVP 178
Query: 321 LAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDEL 380
L +D Y + E L+ +F P+ +V G D + DP+ ++P+GI + +
Sbjct: 179 LQDGIQDDKYYQICEGVLKEVFTTFNPEAVVLQLGADTIAGDPMCSFNMTPEGIGKCLKY 238
Query: 381 VFMKARERRVPIVMLTSGGY-LKQTAR 406
V + ++P ++L GGY L TAR
Sbjct: 239 VL----QWQLPTLILGGGGYHLPNTAR 261
>sp|Q6IRL9|HDAC3_XENLA Histone deacetylase 3 OS=Xenopus laevis GN=hdac3 PE=2 SV=2
Length = 428
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 121/301 (40%), Gaps = 44/301 (14%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKW-----------SFNVAAISEVCPLVAVPNYFVQK 211
+ +P + S+ + H+E Y+ L+ S N + + CP+ P F +
Sbjct: 47 VFKPYQASQHDMCRFHSEDYIDFLQRVSPNNMQGFTKSLNAFNVGDDCPVF--PGLF-EF 103
Query: 212 CYLRPMRYHVGGTLEAGFLALRRGW--SINIGGGFHHASETKGGGFCAYADISLLVKLLF 269
C RY G +L+ L + +IN GG HHA + + GFC DI ++ +L
Sbjct: 104 C----SRY-TGASLQGATLLNNKNCDIAINWAGGLHHAKKFEASGFCYVNDI--VIGILE 156
Query: 270 QSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETC---------------ITSKAKEA 314
K + +D+D H G+G ++ F R+ + + +++
Sbjct: 157 LLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRY 216
Query: 315 IRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGI 374
+ L +DQ Y + +++ + + P IV G D L D LG +S
Sbjct: 217 YCLNVPLRDGIDDQSYRHLFQPVIKQVIDFYQPTCIVLQCGADSLGCDRLGCFNLS---- 272
Query: 375 IRRDELVFMKARERRVPIVMLTSGGY-LKQTARIIADSILNLADLGLISR-PYNIWFIYY 432
IR + +P+++L GGY ++ AR L D + PY+ +F Y+
Sbjct: 273 IRGHGECVQYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVDETISEELPYSEYFEYF 332
Query: 433 T 433
Sbjct: 333 A 333
Score = 33.1 bits (74), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+IN GG HHA + + GFC DI ++ +L K + +D+D H
Sbjct: 126 AINWAGGLHHAKKFEASGFCYVNDI--VIGILELLKYHPRVLYIDIDIHH 173
>sp|O17695|HDA1_CAEEL Histone deacetylase 1 OS=Caenorhabditis elegans GN=hda-1 PE=1 SV=1
Length = 461
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 118/300 (39%), Gaps = 45/300 (15%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKW-------SFNVAA----ISEVCPLVAVPNYFVQK 211
I P S E + H+++Y+ LK SFN + E CPL + +
Sbjct: 57 IFRPFPASFEDMTRFHSDEYMTFLKSANPDNLKSFNKQMLKFNVGEDCPLF---DGLYEF 113
Query: 212 CYLRPMRYHVGGTLEAGFLALRRGWSINIG--GGFHHASETKGGGFCAYADISL-LVKLL 268
C L GG+L A ++ I I GG HHA +++ GFC DI L +++LL
Sbjct: 114 CQLS-----SGGSLAAATKLNKQKVDIAINWMGGLHHAKKSEASGFCYTNDIVLGILELL 168
Query: 269 FQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIME--------------TCITSKAKEA 314
K + + VD+D H G+G E+ F R+ + I + +
Sbjct: 169 KYHKRV---LYVDIDVHHGDGVEEAFYTTDRVMTVSFHKYGDFFPGTGDLKDIGAGKGKL 225
Query: 315 IRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGI 374
+ L D Y + + + + F P +V G D L D LG ++ +G
Sbjct: 226 YSVNVPLRDGITDVSYQSIFKPIMTKVMERFDPCAVVLQCGADSLNGDRLGPFNLTLKGH 285
Query: 375 IRRDELVFMKARERRVPIVMLTSGGYL-KQTARIIADSILNLADLGLISR-PYNIWFIYY 432
R VP++M+ GGY + AR D + + PYN +F Y+
Sbjct: 286 GECARFF----RSYNVPLMMVGGGGYTPRNVARCWTYETSIAVDKEVPNELPYNDYFEYF 341
Score = 35.8 bits (81), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISL-LVKLLFQSKSISTAMIVDLDAHQ 67
+IN GG HHA +++ GFC DI L +++LL K + + VD+D H
Sbjct: 136 AINWMGGLHHAKKSEASGFCYTNDIVLGILELLKYHKRV---LYVDIDVHH 183
>sp|O13298|PHD1_SCHPO Histone deacetylase phd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=phd1 PE=1 SV=1
Length = 434
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 108/276 (39%), Gaps = 47/276 (17%)
Query: 162 NIIEPQEVSEEQLLIAHTEKYLKSLKW-----------SFNVAAISEVCPLVAVPNYFVQ 210
++ P+ + ++ H E YL LK F I + CP+ F Q
Sbjct: 69 SVFSPRMATFGEMSEFHREDYLDFLKRVTPDNAEQFADKFQQFNIGDDCPVFDGTYEFSQ 128
Query: 211 KCYLRPMRYHVGGTLEAG--FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLL 268
+ G +L+A + + +IN GG HHA + GFC DI L + L
Sbjct: 129 RS--------AGASLDASRKLVQGQTDIAINWSGGLHHAKRGEASGFCYVNDIVLAI--L 178
Query: 269 FQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIM-----------------ETCITSKA 311
+ + +D+D H G+G ++ F R+ + E + K
Sbjct: 179 NMLRFFPRVLYIDIDIHHGDGVQQAFYESDRVLTVSFHKYNGDFFPATGNFDENGV--KG 236
Query: 312 KEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISP 371
+ + L D+ Y ++ +E ++ +F P IV G D L D LG+ +S
Sbjct: 237 GKYFALNVPLEDGIGDEQYTSLFKSIIEPTINTFQPSAIVLQCGADSLGYDRLGVFNLS- 295
Query: 372 QGIIRRDELVFMKARERRVPIVMLTSGGY-LKQTAR 406
I E V R +P++++ GGY L+ AR
Sbjct: 296 --IHAHGECVRF-TRSFNIPMLVVGGGGYTLRNVAR 328
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+IN GG HHA + GFC DI L + L + + +D+D H
Sbjct: 149 AINWSGGLHHAKRGEASGFCYVNDIVLAI--LNMLRFFPRVLYIDIDIHH 196
>sp|Q8RX28|HDA5_ARATH Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1
Length = 660
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 81/205 (39%), Gaps = 43/205 (20%)
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSK---SISTAMI 279
G L+ GF +R HHA + GFC + ++++ L + + +I
Sbjct: 143 GELDCGFAIVRPP--------GHHAEADEAMGFCLFNNVAVAASFLLNERPDLGVKKILI 194
Query: 280 VDLDAHQGNGYEKDFMNETRIFIME------------------TCITSKAKEAIRCRIEL 321
VD D H GNG +K F + R+ + E +
Sbjct: 195 VDWDVHHGNGTQKMFWKDPRVLFFSVHRHEYGGFYPAGDDGDYNMVGEGPGEGFNINV-- 252
Query: 322 APYTE----DQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQG--II 375
P+ + D YL + L R F PD+I +AG D +NDPLG ++P G ++
Sbjct: 253 -PWDQGRCGDADYLAAWDHILIPVAREFNPDVIFLSAGFDAAINDPLGGCCVTPYGYSVM 311
Query: 376 RRDELVFMKARERRVPIVMLTSGGY 400
+ + F + + IV+ GGY
Sbjct: 312 LKKLMEFAQGK-----IVLALEGGY 331
>sp|P56520|HDAC3_CHICK Histone deacetylase 3 OS=Gallus gallus GN=HDAC3 PE=2 SV=1
Length = 428
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 121/301 (40%), Gaps = 44/301 (14%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKW-----------SFNVAAISEVCPLVAVPNYFVQK 211
+ +P + S+ + H+E Y+ L+ S N + + CP+ P F +
Sbjct: 47 VFKPYQASQHDMCRFHSEDYIDFLQRVSPNNMQGFTKSLNAFNVGDDCPVF--PGLF-EF 103
Query: 212 CYLRPMRYHVGGTLEAGFLALRR--GWSINIGGGFHHASETKGGGFCAYADISLLVKLLF 269
C RY G +L+ + +IN GG HHA + + GFC DI ++ +L
Sbjct: 104 C----SRY-TGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDI--VIGILE 156
Query: 270 QSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETC---------------ITSKAKEA 314
K + +D+D H G+G ++ F R+ + + +++
Sbjct: 157 LLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRY 216
Query: 315 IRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGI 374
+ L +DQ Y + + + + + P IV G D L D LG +S +G
Sbjct: 217 YALNVPLRDGIDDQSYKHLFQPVINQVVDYYQPTCIVLQCGADSLGRDRLGCFNLSIRGH 276
Query: 375 IRRDELVFMKARERRVPIVMLTSGGY-LKQTARIIADSILNLADLGLISR-PYNIWFIYY 432
E V + +P+++L GGY ++ AR L D + PY+ +F Y+
Sbjct: 277 GECVEYV----KSFNIPLLVLGGGGYTVRNVARCWTYETSLLVDEAISEELPYSEYFEYF 332
Query: 433 T 433
Sbjct: 333 A 333
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+IN GG HHA + + GFC DI ++ +L K + +D+D H
Sbjct: 126 AINWAGGLHHAKKFEASGFCYVNDI--VIGILELLKYHPRVLYIDIDIHH 173
>sp|Q4SFA0|HDAC3_TETNG Histone deacetylase 3 OS=Tetraodon nigroviridis GN=hdac3 PE=3 SV=1
Length = 428
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 126/301 (41%), Gaps = 44/301 (14%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKW-----------SFNVAAISEVCPLVAVPNYFVQK 211
+ +P + S+ + H+E Y+ L+ S N + + CP+ P F +
Sbjct: 47 VFKPYKASQHDMCRFHSEDYIDFLQKVSPNNMQGFTKSLNTFNVGDDCPVF--PGLF-EF 103
Query: 212 CYLRPMRYHVGGTLEAGFLALRR--GWSINIGGGFHHASETKGGGFCAYADISLLVKLLF 269
C RY G +L+ + +IN GG HHA + + GFC DI ++ +L
Sbjct: 104 C----SRY-TGASLQGATQLNHKICDIAINWAGGLHHAKKFEASGFCYVNDI--VISILE 156
Query: 270 QSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETC---------------ITSKAKEA 314
K + +D+D H G+G ++ F R+ + + +++
Sbjct: 157 LLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRY 216
Query: 315 IRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGI 374
+ L +DQ Y + + +++ + + P IV G D L D LG +S +G
Sbjct: 217 YCLNVPLRDGIDDQSYRQLFQPVIKQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
Query: 375 IRRDELVFMKARERRVPIVMLTSGGY-LKQTARI-IADSILNLADLGLISRPYNIWFIYY 432
E V + ++P+++L GGY ++ AR ++ L L + PY+ +F Y+
Sbjct: 277 GECVEFV----KSFKIPLLVLGGGGYTVRNVARCWTFETSLLLEESISDELPYSEYFEYF 332
Query: 433 T 433
Sbjct: 333 A 333
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+IN GG HHA + + GFC DI ++ +L K + +D+D H
Sbjct: 126 AINWAGGLHHAKKFEASGFCYVNDI--VISILELLKYHPRVLYIDIDIHH 173
>sp|Q28DV3|HDAC3_XENTR Histone deacetylase 3 OS=Xenopus tropicalis GN=hdac3 PE=2 SV=1
Length = 428
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 120/301 (39%), Gaps = 44/301 (14%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKW-----------SFNVAAISEVCPLVAVPNYFVQK 211
+ +P + S+ + H+E Y+ L+ S N + + CP+ P F +
Sbjct: 47 VFKPYQASQHDMCRFHSEDYIDFLQRVSPNNMQGFTKSLNAFNVGDDCPVF--PGLF-EF 103
Query: 212 CYLRPMRYHVGGTLEAGFLALRR--GWSINIGGGFHHASETKGGGFCAYADISLLVKLLF 269
C RY G +L+ + +IN GG HHA + + GFC DI ++ +L
Sbjct: 104 C----SRY-TGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDI--VIGILE 156
Query: 270 QSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETC---------------ITSKAKEA 314
K + VD+D H G+G ++ F R+ + + +++
Sbjct: 157 LLKYHPRVLYVDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRY 216
Query: 315 IRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGI 374
+ L +DQ Y + +++ + + P IV G D L D LG +S
Sbjct: 217 YCLNVPLRDGIDDQSYRHLFQPVIKQVIDFYQPTCIVLQCGADSLGCDRLGCFNLS---- 272
Query: 375 IRRDELVFMKARERRVPIVMLTSGGY-LKQTARIIADSILNLADLGLISR-PYNIWFIYY 432
IR + +P+++L GGY ++ AR L D + PY+ +F Y+
Sbjct: 273 IRGHGECVQYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVDETISEELPYSEYFEYF 332
Query: 433 T 433
Sbjct: 333 A 333
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+IN GG HHA + + GFC DI ++ +L K + VD+D H
Sbjct: 126 AINWAGGLHHAKKFEASGFCYVNDI--VIGILELLKYHPRVLYVDIDIHH 173
>sp|Q9BY41|HDAC8_HUMAN Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=1 SV=2
Length = 377
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 74/337 (21%), Positives = 128/337 (37%), Gaps = 52/337 (15%)
Query: 97 EITSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAK 156
E EP +S + +Y PEY L K+ S + + L+EA
Sbjct: 2 EEPEEPADSGQSLVPVYIYSPEYVSMCDSLAKIPKRAS-------------MVHSLIEAY 48
Query: 157 FI-TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVA----------AISEVCPLVAVP 205
+ Q I++P+ S E++ HT+ YL+ L+ + CP A
Sbjct: 49 ALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCP--ATE 106
Query: 206 NYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLV 265
F + L G + WS GG+HHA + + GFC D L
Sbjct: 107 GIFDYAAAIGGATITAAQCLIDGMCKVAINWS----GGWHHAKKDEASGFCYLNDAVL-- 160
Query: 266 KLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIME---------------TCITSK 310
+L + + VDLD H G+G E F +++ + + +
Sbjct: 161 GILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLG 220
Query: 311 AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAIS 370
+ + +D+ Y + E+ L+ ++F P +V G D + DP+ ++
Sbjct: 221 KGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMT 280
Query: 371 PQGIIRRDELVFMKARERRVPIVMLTSGGY-LKQTAR 406
P GI + + + + ++ ++L GGY L TAR
Sbjct: 281 PVGIGKCLKYIL----QWQLATLILGGGGYNLANTAR 313
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+IN GG+HHA + + GFC D L +L + + VDLD H
Sbjct: 134 AINWSGGWHHAKKDEASGFCYLNDAVL--GILRLRRKFERILYVDLDLHH 181
>sp|Q0VCB2|HDAC8_BOVIN Histone deacetylase 8 OS=Bos taurus GN=HDAC8 PE=2 SV=1
Length = 377
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/341 (22%), Positives = 130/341 (38%), Gaps = 60/341 (17%)
Query: 97 EITSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAK 156
E + EP ++ + P +Y PEY L K+ S + + L+EA
Sbjct: 2 EESEEPADAGQSLPPVYIYSPEYVSVCDSLAKVPKRAS-------------MVHSLIEAY 48
Query: 157 FI-TQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVA----------AISEVCPLV-AV 204
+ Q I++P+ S E++ HT+ YL+ L+ + CP +
Sbjct: 49 ALHKQMRIVKPKVASMEEMASFHTDAYLQHLQKVSEDGDDDHPDSIEYGLGYDCPATEGI 108
Query: 205 PNYFVQKCYLRPMRYHVGGTLEAGFLALRRGW---SINIGGGFHHASETKGGGFCAYADI 261
+Y VGG L G +IN GG+HHA + + GFC D
Sbjct: 109 FDYAAA----------VGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDA 158
Query: 262 SLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIME---------------TC 306
L +L + + VDLD H G+G E F +++ + +
Sbjct: 159 VL--GILRLRRKFDRILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSD 216
Query: 307 ITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGL 366
+ + + +D+ Y E+ L+ +F P +V G D + DP+
Sbjct: 217 VGLGKGRYYSVNVPIQDCIQDERYYHICESVLKEVYIAFNPKAVVLQLGADTIAGDPMCS 276
Query: 367 LAISPQGIIRRDELVFMKARERRVPIVMLTSGGY-LKQTAR 406
++P GI + + + + + ++L GGY L TAR
Sbjct: 277 FNMTPVGIGKCLKYIL----QWELATLILGGGGYNLANTAR 313
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+IN GG+HHA + + GFC D L +L + + VDLD H
Sbjct: 134 AINWSGGWHHAKKDEASGFCYLNDAVL--GILRLRRKFDRILYVDLDLHH 181
>sp|P53096|HOS2_YEAST Probable histone deacetylase HOS2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=HOS2 PE=1 SV=1
Length = 452
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 113/270 (41%), Gaps = 47/270 (17%)
Query: 162 NIIEPQEVSEEQLLIAHTEKYLKSL------------KWSFNVAAISEVCPLVAVPNYFV 209
++ E + + ++LL H+E Y+ L + + I + CP+
Sbjct: 69 DLYETRSATRDELLQFHSEDYVNFLSKVSPENANKLPRGTLENFNIGDDCPIF------- 121
Query: 210 QKCYLRPMRYHVGGTLEAG--FLALRRGWSINIGGGFHHASETKGGGFCAYADISL-LVK 266
Q Y Y G +L+A + + +IN GG HHA + GFC DI L ++
Sbjct: 122 QNLYDYTTLY-TGASLDATRKLINNQSDIAINWSGGLHHAKKNSPSGFCYVNDIVLSILN 180
Query: 267 LLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIME---------------TCITSKA 311
LL I + +D+D H G+G ++ F R+F + T I
Sbjct: 181 LLRYHPRI---LYIDIDLHHGDGVQEAFYTTDRVFTLSFHKYNGEFFPGTGDLTEIGCDK 237
Query: 312 KEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISP 371
+ + L +D Y+ ++ ++ + +F P +IV G D L +D LG ++
Sbjct: 238 GKHFALNVPLEDGIDDDSYINLFKSIVDPLIMTFKPTLIVQQCGADSLGHDRLGCFNLN- 296
Query: 372 QGIIRRDELV-FMKARERRVPIVMLTSGGY 400
I E V F+K+ +P++++ GGY
Sbjct: 297 --IKAHGECVKFVKS--FGLPMLVVGGGGY 322
Score = 33.1 bits (74), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISL-LVKLLFQSKSISTAMIVDLDAHQ 67
+IN GG HHA + GFC DI L ++ LL I + +D+D H
Sbjct: 150 AINWSGGLHHAKKNSPSGFCYVNDIVLSILNLLRYHPRI---LYIDIDLHH 197
>sp|P56519|HDAC2_CHICK Histone deacetylase 2 OS=Gallus gallus GN=HDAC2 PE=2 SV=1
Length = 488
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 112/283 (39%), Gaps = 53/283 (18%)
Query: 130 HPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLK-- 187
HP + + N L NY + K I P + + E++ H+++Y+K L+
Sbjct: 29 HPMKPHRIRMTHNLL----LNYGLYRKM----EIYRPHKATAEEMTKYHSDEYIKFLRSI 80
Query: 188 ------------WSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRR- 234
FNV E CP+ + + C L GG++ AG + L R
Sbjct: 81 RPDNMSEYSKQMQRFNVG---EDCPVF---DGLFEFCQLS-----TGGSV-AGAVKLNRQ 128
Query: 235 --GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
++N GG HHA +++ GFC DI L + L K + +D+D H G+G E+
Sbjct: 129 QTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELL--KYHQRVLYIDIDIHHGDGVEE 186
Query: 293 DFMNETRIFIMETC--------------ITSKAKEAIRCRIELAPYTEDQHYLEKIEAGL 338
F R+ + I + + + +D+ Y + + +
Sbjct: 187 AFYTTDRVMTVSEVSMVNNFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPII 246
Query: 339 ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV 381
+ + + P +V G D L D LG ++ +G + E+V
Sbjct: 247 SKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVV 289
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 8 AGFLALRR---GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
AG + L R ++N GG HHA +++ GFC DI L + L K + +D+D
Sbjct: 120 AGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELL--KYHQRVLYIDID 177
Query: 65 AHQ 67
H
Sbjct: 178 IHH 180
>sp|O17323|HDA4_CAEEL Histone deacetylase 4 OS=Caenorhabditis elegans GN=hda-4 PE=1 SV=3
Length = 869
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 84/202 (41%), Gaps = 38/202 (18%)
Query: 223 GTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSK---SISTAMI 279
G L+ GF +R HHA + GFC + ++++ VK+L Q+K + I
Sbjct: 593 GRLKNGFACIRPPG--------HHAEHEQAMGFCFFNNVAVAVKVL-QTKYPAQCAKIAI 643
Query: 280 VDLDAHQGNGYEKDFMNETRIFIME-------------TCITSKAKEAIRCRIELAPYT- 325
+D D H GNG + F N+ + M +T K + P++
Sbjct: 644 IDWDVHHGNGTQLSFENDPNVLYMSLHRHDKGNFFPGTGSVTEVGKNDAKGLTVNVPFSG 703
Query: 326 ---EDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDP--LGLLAISPQ--GIIRRD 378
D YL +E + SFCPD I+ +AG D P LG ++P+ G + +
Sbjct: 704 DVMRDPEYLAAWRTVIEPVMASFCPDFIIVSAGFDACHGHPNALGGYEVTPEMFGYMTKS 763
Query: 379 ELVFMKARERRVPIVMLTSGGY 400
L + + +V+ GGY
Sbjct: 764 LLNYASGK-----VVLALEGGY 780
>sp|Q92769|HDAC2_HUMAN Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=1 SV=2
Length = 488
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 112/283 (39%), Gaps = 53/283 (18%)
Query: 130 HPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLK-- 187
HP + + N L NY + K I P + + E++ H+++Y+K L+
Sbjct: 29 HPMKPHRIRMTHNLL----LNYGLYRKM----EIYRPHKATAEEMTKYHSDEYIKFLRSI 80
Query: 188 ------------WSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRR- 234
FNV E CP+ + + C L GG++ AG + L R
Sbjct: 81 RPDNMSEYSKQMQRFNVG---EDCPVF---DGLFEFCQLS-----TGGSV-AGAVKLNRQ 128
Query: 235 --GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
++N GG HHA +++ GFC DI L + L K + +D+D H G+G E+
Sbjct: 129 QTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELL--KYHQRVLYIDIDIHHGDGVEE 186
Query: 293 DFMNETRIFIME--------------TCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGL 338
F R+ + I + + + +D+ Y + + +
Sbjct: 187 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPII 246
Query: 339 ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELV 381
+ + + P +V G D L D LG ++ +G + E+V
Sbjct: 247 SKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVV 289
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 8 AGFLALRR---GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
AG + L R ++N GG HHA +++ GFC DI L + L K + +D+D
Sbjct: 120 AGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELL--KYHQRVLYIDID 177
Query: 65 AHQ 67
H
Sbjct: 178 IHH 180
>sp|Q803C3|HDAC3_DANRE Histone deacetylase 3 OS=Danio rerio GN=hdac3 PE=2 SV=1
Length = 428
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 123/301 (40%), Gaps = 44/301 (14%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKW-----------SFNVAAISEVCPLVAVPNYFVQK 211
+ +P + S+ + H+E Y+ L+ S N + CP+ P F +
Sbjct: 47 VFKPYKASQHDMCRFHSEDYIDFLQKVSPNNMQGFTKSLNTFNVGGDCPVF--PGLF-EF 103
Query: 212 CYLRPMRYHVGGTLEAGFLALRR--GWSINIGGGFHHASETKGGGFCAYADISLLVKLLF 269
C RY G +L+ + +IN GG HHA + + GFC DI ++ +L
Sbjct: 104 C----SRY-TGASLQGATQLNHKICDIAINWAGGLHHAKKFEASGFCYVNDI--VISILE 156
Query: 270 QSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETC---------------ITSKAKEA 314
K + +D+D H G+G ++ F R+ + + +++
Sbjct: 157 LLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRY 216
Query: 315 IRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGI 374
+ L +DQ Y + + +++ + + P IV G D L D LG +S +G
Sbjct: 217 YCLNVPLRDGIDDQSYRQLFQPVIKQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
Query: 375 IRRDELVFMKARERRVPIVMLTSGGY-LKQTARIIADSILNLADLGLISR-PYNIWFIYY 432
E V + ++P+++L GGY ++ AR L + + PY+ +F Y+
Sbjct: 277 GECVEFV----KGFKIPLLVLGGGGYTVRNVARCWTFETSLLVEESISDELPYSEYFEYF 332
Query: 433 T 433
Sbjct: 333 A 333
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+IN GG HHA + + GFC DI ++ +L K + +D+D H
Sbjct: 126 AINWAGGLHHAKKFEASGFCYVNDI--VISILELLKYHPRVLYIDIDIHH 173
>sp|P70288|HDAC2_MOUSE Histone deacetylase 2 OS=Mus musculus GN=Hdac2 PE=1 SV=1
Length = 488
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 108/275 (39%), Gaps = 53/275 (19%)
Query: 130 HPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLK-- 187
HP + + N L NY + K I P + + E++ H+++Y+K L+
Sbjct: 29 HPMKPHRIRMTHNLL----LNYGLYRKM----EIYRPHKATAEEMTKYHSDEYIKFLRSI 80
Query: 188 ------------WSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRR- 234
FNV E CP+ + + C L GG++ AG + L R
Sbjct: 81 RPDNMSEYSKQMQRFNVG---EDCPVF---DGLFEFCQLS-----TGGSV-AGAVKLNRQ 128
Query: 235 --GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292
++N GG HHA +++ GFC DI L + L K + +D+D H G+G E+
Sbjct: 129 QTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELL--KYHQRVLYIDIDIHHGDGVEE 186
Query: 293 DFMNETRIFIME--------------TCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGL 338
F R+ + I + + + +D+ Y + + +
Sbjct: 187 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPII 246
Query: 339 ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQG 373
+ + + P +V G D L D LG ++ +G
Sbjct: 247 SKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKG 281
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 8 AGFLALRR---GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLD 64
AG + L R ++N GG HHA +++ GFC DI L + L K + +D+D
Sbjct: 120 AGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELL--KYHQRVLYIDID 177
Query: 65 AHQ 67
H
Sbjct: 178 IHH 180
>sp|Q6P6W3|HDAC3_RAT Histone deacetylase 3 OS=Rattus norvegicus GN=Hdac3 PE=1 SV=1
Length = 428
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 121/301 (40%), Gaps = 44/301 (14%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKW-----------SFNVAAISEVCPLVAVPNYFVQK 211
+ +P + S+ + H+E Y+ L+ S N + + CP+ P F +
Sbjct: 47 VFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVF--PGLF-EF 103
Query: 212 CYLRPMRYHVGGTLEAGFLALRR--GWSINIGGGFHHASETKGGGFCAYADISLLVKLLF 269
C RY G +L+ + +IN GG HHA + + GFC DI ++ +L
Sbjct: 104 C----SRY-TGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDI--VIGILE 156
Query: 270 QSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETC---------------ITSKAKEA 314
K + +D+D H G+G ++ F R+ + + +++
Sbjct: 157 LLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRY 216
Query: 315 IRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGI 374
+ L +DQ Y + + + + + P IV G D L D LG +S +G
Sbjct: 217 YCLNVPLRDGIDDQSYKHLFQPVISQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
Query: 375 IRRDELVFMKARERRVPIVMLTSGGY-LKQTARIIADSILNLADLGLISR-PYNIWFIYY 432
E V + +P+++L GGY ++ AR L + + PY+ +F Y+
Sbjct: 277 GECVEYV----KSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYF 332
Query: 433 T 433
Sbjct: 333 A 333
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+IN GG HHA + + GFC DI ++ +L K + +D+D H
Sbjct: 126 AINWAGGLHHAKKFEASGFCYVNDI--VIGILELLKYHPRVLYIDIDIHH 173
>sp|O15379|HDAC3_HUMAN Histone deacetylase 3 OS=Homo sapiens GN=HDAC3 PE=1 SV=2
Length = 428
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 121/301 (40%), Gaps = 44/301 (14%)
Query: 163 IIEPQEVSEEQLLIAHTEKYLKSLKW-----------SFNVAAISEVCPLVAVPNYFVQK 211
+ +P + S+ + H+E Y+ L+ S N + + CP+ P F +
Sbjct: 47 VFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVF--PGLF-EF 103
Query: 212 CYLRPMRYHVGGTLEAGFLALRR--GWSINIGGGFHHASETKGGGFCAYADISLLVKLLF 269
C RY G +L+ + +IN GG HHA + + GFC DI ++ +L
Sbjct: 104 C----SRY-TGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDI--VIGILE 156
Query: 270 QSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETC---------------ITSKAKEA 314
K + +D+D H G+G ++ F R+ + + +++
Sbjct: 157 LLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRY 216
Query: 315 IRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGI 374
+ L +DQ Y + + + + + P IV G D L D LG +S +G
Sbjct: 217 YCLNVPLRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
Query: 375 IRRDELVFMKARERRVPIVMLTSGGY-LKQTARIIADSILNLADLGLISR-PYNIWFIYY 432
E V + +P+++L GGY ++ AR L + + PY+ +F Y+
Sbjct: 277 GECVEYV----KSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYF 332
Query: 433 T 433
Sbjct: 333 A 333
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 18 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 67
+IN GG HHA + + GFC DI ++ +L K + +D+D H
Sbjct: 126 AINWAGGLHHAKKFEASGFCYVNDI--VIGILELLKYHPRVLYIDIDIHH 173
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162,389,992
Number of Sequences: 539616
Number of extensions: 6920011
Number of successful extensions: 16131
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 15795
Number of HSP's gapped (non-prelim): 252
length of query: 436
length of database: 191,569,459
effective HSP length: 120
effective length of query: 316
effective length of database: 126,815,539
effective search space: 40073710324
effective search space used: 40073710324
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)