Query psy8529
Match_columns 436
No_of_seqs 268 out of 2488
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 21:15:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8529.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8529hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00063 histone deacetylase; 100.0 6.7E-78 1.4E-82 614.3 33.5 312 108-435 3-339 (436)
2 PTZ00346 histone deacetylase; 100.0 3.6E-77 7.8E-82 605.2 32.9 313 107-435 18-359 (429)
3 COG0123 AcuC Deacetylases, inc 100.0 2.6E-75 5.6E-80 583.6 30.9 296 110-421 3-315 (340)
4 PF00850 Hist_deacetyl: Histon 100.0 3E-73 6.5E-78 566.9 20.6 282 116-415 1-310 (311)
5 KOG1342|consensus 100.0 2.4E-66 5.3E-71 506.1 26.2 313 107-435 5-339 (425)
6 KOG1344|consensus 100.0 2.1E-60 4.6E-65 437.4 16.5 312 101-421 6-323 (324)
7 KOG1343|consensus 100.0 3.5E-54 7.5E-59 464.6 22.9 281 128-428 463-768 (797)
8 KOG1343|consensus 100.0 1.3E-35 2.9E-40 320.7 10.2 303 108-425 28-362 (797)
9 PTZ00346 histone deacetylase; 99.9 8.2E-23 1.8E-27 208.5 7.1 79 2-82 128-213 (429)
10 PTZ00063 histone deacetylase; 99.9 1E-22 2.2E-27 208.9 7.5 79 2-82 111-196 (436)
11 PF00850 Hist_deacetyl: Histon 99.9 1.2E-22 2.5E-27 203.1 5.5 81 2-83 96-185 (311)
12 COG0123 AcuC Deacetylases, inc 99.8 1.1E-21 2.5E-26 196.9 7.4 80 2-82 99-185 (340)
13 KOG1342|consensus 99.8 1.3E-21 2.9E-26 192.5 4.9 79 1-81 111-196 (425)
14 KOG1344|consensus 99.6 8.1E-17 1.7E-21 149.5 4.3 68 2-69 118-185 (324)
15 cd01835 SGNH_hydrolase_like_3 88.4 2.4 5.3E-05 38.6 8.3 75 318-395 42-117 (193)
16 PRK10528 multifunctional acyl- 87.8 6.7 0.00015 36.1 10.9 72 340-418 65-140 (191)
17 cd01828 sialate_O-acetylestera 85.5 4 8.7E-05 36.3 7.9 45 344-395 46-93 (169)
18 cd01822 Lysophospholipase_L1_l 84.4 6.1 0.00013 35.1 8.6 49 340-395 58-107 (177)
19 cd04501 SGNH_hydrolase_like_4 83.8 6.6 0.00014 35.3 8.6 61 325-396 42-103 (183)
20 cd01832 SGNH_hydrolase_like_1 82.0 8.5 0.00018 34.5 8.6 63 327-396 49-112 (185)
21 PF13472 Lipase_GDSL_2: GDSL-l 78.8 3.8 8.1E-05 35.7 5.0 74 318-397 35-109 (179)
22 cd01836 FeeA_FeeB_like SGNH_hy 77.0 9.5 0.00021 34.5 7.3 60 324-395 50-112 (191)
23 cd01825 SGNH_hydrolase_peri1 S 76.9 11 0.00024 33.7 7.7 54 337-396 47-103 (189)
24 cd01833 XynB_like SGNH_hydrola 75.7 12 0.00026 32.7 7.3 42 340-388 34-76 (157)
25 cd04502 SGNH_hydrolase_like_7 73.9 17 0.00037 32.3 8.0 49 340-395 44-95 (171)
26 cd01830 XynE_like SGNH_hydrola 73.9 16 0.00034 33.8 8.0 63 329-394 60-124 (204)
27 cd01821 Rhamnogalacturan_acety 73.8 15 0.00032 33.6 7.7 48 346-395 65-113 (198)
28 cd01838 Isoamyl_acetate_hydrol 73.3 13 0.00029 33.4 7.2 62 328-395 46-113 (199)
29 cd01841 NnaC_like NnaC (CMP-Ne 73.1 20 0.00042 31.9 8.2 66 317-394 27-95 (174)
30 COG3914 Spy Predicted O-linked 71.9 92 0.002 34.0 13.7 158 252-433 313-507 (620)
31 KOG0121|consensus 68.7 3.7 7.9E-05 35.9 2.2 45 248-292 73-122 (153)
32 PF09754 PAC2: PAC2 family; I 66.2 22 0.00048 33.3 7.3 134 262-403 13-176 (219)
33 cd01820 PAF_acetylesterase_lik 63.9 16 0.00035 33.9 5.9 47 342-395 85-134 (214)
34 cd00984 DnaB_C DnaB helicase C 63.7 26 0.00057 33.0 7.3 60 334-396 111-170 (242)
35 TIGR03018 pepcterm_TyrKin exop 62.8 35 0.00075 31.7 7.8 24 332-355 134-157 (207)
36 TIGR00161 conserved hypothetic 62.0 1.5E+02 0.0033 28.4 15.8 147 258-421 26-202 (238)
37 cd01829 SGNH_hydrolase_peri2 S 61.6 40 0.00088 30.5 8.0 58 339-396 52-115 (200)
38 KOG0835|consensus 57.8 9.2 0.0002 38.5 3.0 72 353-434 131-213 (367)
39 KOG0121|consensus 56.1 9.1 0.0002 33.5 2.3 38 29-66 73-115 (153)
40 cd01971 Nitrogenase_VnfN_like 55.3 45 0.00097 35.0 7.9 59 332-404 72-131 (427)
41 PF00148 Oxidored_nitro: Nitro 55.0 25 0.00055 36.1 6.0 66 332-410 60-126 (398)
42 TIGR03282 methan_mark_13 putat 52.6 77 0.0017 32.4 8.6 73 333-421 62-136 (352)
43 TIGR00665 DnaB replicative DNA 52.4 40 0.00088 35.2 7.0 54 334-396 293-352 (434)
44 PRK14476 nitrogenase molybdenu 52.3 70 0.0015 33.9 8.8 60 332-404 78-142 (455)
45 cd01967 Nitrogenase_MoFe_alpha 51.8 74 0.0016 32.8 8.8 58 332-402 73-131 (406)
46 PRK08760 replicative DNA helic 51.5 38 0.00082 36.2 6.7 49 338-395 331-385 (476)
47 COG2047 Uncharacterized protei 51.5 34 0.00074 32.8 5.5 47 346-403 83-129 (258)
48 cd01834 SGNH_hydrolase_like_2 51.3 33 0.00073 30.5 5.5 51 342-395 57-110 (191)
49 cd01972 Nitrogenase_VnfE_like 51.2 79 0.0017 33.1 9.0 58 332-402 75-133 (426)
50 PRK05595 replicative DNA helic 50.7 35 0.00077 35.9 6.3 46 341-395 306-357 (444)
51 cd01122 GP4d_helicase GP4d_hel 49.7 32 0.00069 33.2 5.4 52 336-396 130-188 (271)
52 PRK05973 replicative DNA helic 49.7 39 0.00085 32.6 5.9 51 337-396 138-190 (237)
53 TIGR01285 nifN nitrogenase mol 49.7 61 0.0013 34.1 7.8 71 332-415 77-152 (432)
54 PRK09165 replicative DNA helic 49.3 44 0.00095 35.9 6.8 48 340-396 335-390 (497)
55 CHL00073 chlN photochlorophyll 48.3 61 0.0013 34.5 7.5 58 333-402 84-141 (457)
56 cd00840 MPP_Mre11_N Mre11 nucl 48.1 1.2E+02 0.0026 27.7 8.9 61 327-396 23-83 (223)
57 cd01839 SGNH_arylesterase_like 47.6 83 0.0018 28.8 7.7 39 345-388 78-117 (208)
58 PHA02546 47 endonuclease subun 47.6 1.1E+02 0.0023 31.1 9.0 65 328-401 22-87 (340)
59 TIGR01969 minD_arch cell divis 47.3 22 0.00047 33.6 3.7 26 43-69 18-43 (251)
60 cd01979 Pchlide_reductase_N Pc 47.3 53 0.0012 34.0 6.9 72 332-416 73-145 (396)
61 cd00229 SGNH_hydrolase SGNH_hy 46.4 84 0.0018 26.6 7.1 56 340-400 59-117 (187)
62 TIGR01283 nifE nitrogenase mol 46.0 62 0.0013 34.2 7.3 58 333-403 108-166 (456)
63 TIGR01279 DPOR_bchN light-inde 45.9 1.5E+02 0.0033 30.9 10.0 59 332-403 70-129 (407)
64 cd01981 Pchlide_reductase_B Pc 45.7 44 0.00096 34.9 6.1 59 333-404 72-131 (430)
65 cd01965 Nitrogenase_MoFe_beta_ 45.2 1.2E+02 0.0026 31.7 9.2 31 333-363 68-99 (428)
66 PRK05636 replicative DNA helic 44.4 59 0.0013 35.0 6.8 49 338-395 367-421 (505)
67 TIGR01969 minD_arch cell divis 44.3 24 0.00051 33.4 3.5 20 275-295 30-49 (251)
68 PF02310 B12-binding: B12 bind 44.2 58 0.0013 27.0 5.5 72 261-355 17-88 (121)
69 cd01844 SGNH_hydrolase_like_6 43.9 77 0.0017 28.3 6.7 18 340-357 51-68 (177)
70 cd01966 Nitrogenase_NifN_1 Nit 43.8 1.4E+02 0.003 31.3 9.4 67 333-412 68-139 (417)
71 TIGR01278 DPOR_BchB light-inde 43.5 41 0.00089 36.2 5.5 72 332-417 71-147 (511)
72 cd01968 Nitrogenase_NifE_I Nit 43.2 78 0.0017 32.9 7.4 58 333-403 73-131 (410)
73 PF10609 ParA: ParA/MinD ATPas 43.0 37 0.00081 27.2 3.8 56 318-397 5-61 (81)
74 TIGR03600 phage_DnaB phage rep 42.7 84 0.0018 32.7 7.6 47 340-395 298-350 (421)
75 PRK14478 nitrogenase molybdenu 42.5 67 0.0014 34.3 6.8 58 333-403 106-164 (475)
76 PF02075 RuvC: Crossover junct 42.4 1.9E+02 0.0042 25.6 8.9 97 320-424 32-136 (149)
77 PRK06321 replicative DNA helic 42.3 82 0.0018 33.7 7.5 50 337-395 327-385 (472)
78 COG0825 AccA Acetyl-CoA carbox 41.9 84 0.0018 31.4 6.8 52 369-421 131-190 (317)
79 COG0420 SbcD DNA repair exonuc 41.7 1E+02 0.0022 31.7 7.9 66 326-401 21-86 (390)
80 PRK13236 nitrogenase reductase 41.2 28 0.0006 34.6 3.5 27 42-69 22-48 (296)
81 TIGR00619 sbcd exonuclease Sbc 41.0 1.6E+02 0.0034 28.5 8.7 61 328-396 22-82 (253)
82 PRK08006 replicative DNA helic 40.9 81 0.0018 33.7 7.2 46 342-396 331-383 (471)
83 PF02585 PIG-L: GlcNAc-PI de-N 40.7 64 0.0014 27.3 5.3 27 332-358 86-112 (128)
84 PRK05748 replicative DNA helic 40.4 1E+02 0.0022 32.5 7.8 49 338-395 305-361 (448)
85 cd04237 AAK_NAGS-ABP AAK_NAGS- 40.1 95 0.0021 30.6 7.1 63 329-403 1-63 (280)
86 COG1066 Sms Predicted ATP-depe 39.7 1.3E+02 0.0028 31.7 8.1 60 335-396 158-217 (456)
87 COG0683 LivK ABC-type branched 39.0 69 0.0015 32.5 6.1 75 261-352 135-209 (366)
88 CHL00076 chlB photochlorophyll 38.9 1.3E+02 0.0029 32.4 8.5 73 332-417 71-148 (513)
89 cd03466 Nitrogenase_NifN_2 Nit 38.8 1.4E+02 0.0031 31.2 8.6 32 332-363 70-102 (429)
90 PRK13236 nitrogenase reductase 38.8 29 0.00063 34.4 3.3 29 266-296 27-55 (296)
91 cd01125 repA Hexameric Replica 38.7 1E+02 0.0022 29.2 6.9 45 343-396 108-156 (239)
92 PF03796 DnaB_C: DnaB-like hel 38.2 65 0.0014 31.0 5.5 59 334-395 117-176 (259)
93 KOG3022|consensus 38.0 2.8E+02 0.006 27.7 9.6 33 274-306 76-124 (300)
94 TIGR02855 spore_yabG sporulati 37.4 30 0.00064 34.2 2.9 30 336-366 143-172 (283)
95 COG1091 RfbD dTDP-4-dehydrorha 37.4 51 0.0011 32.7 4.7 54 338-395 42-98 (281)
96 PHA02542 41 41 helicase; Provi 36.9 1.2E+02 0.0026 32.4 7.7 62 323-395 280-350 (473)
97 TIGR00162 conserved hypothetic 36.8 89 0.0019 29.0 5.9 31 368-398 26-56 (188)
98 cd06558 crotonase-like Crotona 36.4 2.1E+02 0.0046 25.7 8.5 77 325-402 22-105 (195)
99 TIGR03878 thermo_KaiC_2 KaiC d 34.9 1.7E+02 0.0037 28.3 7.9 53 336-397 121-174 (259)
100 PF01993 MTD: methylene-5,6,7, 34.6 60 0.0013 31.5 4.4 48 334-397 47-94 (276)
101 TIGR01287 nifH nitrogenase iro 34.3 51 0.0011 31.9 4.1 13 275-287 29-41 (275)
102 PRK10818 cell division inhibit 33.9 47 0.001 32.0 3.8 25 44-69 21-45 (270)
103 cd01974 Nitrogenase_MoFe_beta 33.4 2.2E+02 0.0047 29.9 8.9 32 332-363 71-103 (435)
104 COG1891 Uncharacterized protei 33.3 88 0.0019 29.0 5.1 47 318-365 85-132 (235)
105 KOG4184|consensus 33.0 47 0.001 34.0 3.6 24 329-353 222-245 (478)
106 PRK10818 cell division inhibit 33.0 46 0.00099 32.1 3.5 16 275-290 32-47 (270)
107 TIGR00513 accA acetyl-CoA carb 32.7 1.7E+02 0.0037 29.6 7.5 49 369-418 132-188 (316)
108 PRK12319 acetyl-CoA carboxylas 32.2 1.9E+02 0.004 28.4 7.6 52 368-420 78-137 (256)
109 TIGR02931 anfK_nitrog Fe-only 32.2 1.1E+02 0.0024 32.4 6.6 70 334-416 80-159 (461)
110 PRK13230 nitrogenase reductase 31.8 49 0.0011 32.2 3.5 20 48-69 23-42 (279)
111 PRK07658 enoyl-CoA hydratase; 31.3 2.5E+02 0.0055 26.9 8.4 74 324-398 23-103 (257)
112 CHL00175 minD septum-site dete 30.8 57 0.0012 31.7 3.8 14 56-69 45-58 (281)
113 cd02036 MinD Bacterial cell di 30.7 62 0.0014 28.5 3.8 14 56-69 29-42 (179)
114 PLN03230 acetyl-coenzyme A car 30.5 1.9E+02 0.0041 30.5 7.6 52 368-420 201-260 (431)
115 cd04506 SGNH_hydrolase_YpmR_li 30.4 71 0.0015 29.1 4.2 51 345-395 67-127 (204)
116 CHL00198 accA acetyl-CoA carbo 30.3 5.3E+02 0.011 26.2 10.6 33 369-402 135-168 (322)
117 PRK06495 enoyl-CoA hydratase; 30.2 2.6E+02 0.0056 26.9 8.3 29 324-352 25-53 (257)
118 PF09383 NIL: NIL domain; Int 30.1 7.5 0.00016 30.2 -2.1 36 336-371 17-52 (76)
119 cd02040 NifH NifH gene encodes 30.0 59 0.0013 31.2 3.7 13 56-69 30-42 (270)
120 PRK02399 hypothetical protein; 30.0 1.7E+02 0.0037 30.6 7.2 69 359-427 302-385 (406)
121 PF14606 Lipase_GDSL_3: GDSL-l 29.9 91 0.002 28.9 4.7 52 334-396 47-100 (178)
122 PF13481 AAA_25: AAA domain; P 29.4 95 0.0021 27.9 4.8 53 339-396 133-186 (193)
123 cd02065 B12-binding_like B12 b 29.0 2.3E+02 0.0051 23.3 6.9 15 341-355 45-59 (125)
124 COG1618 Predicted nucleotide k 29.0 1.8E+02 0.0038 26.9 6.2 50 334-396 86-137 (179)
125 TIGR03877 thermo_KaiC_1 KaiC d 28.8 1.9E+02 0.0041 27.4 7.0 55 334-397 114-169 (237)
126 cd00316 Oxidoreductase_nitroge 28.8 3.2E+02 0.007 27.8 9.2 57 334-403 68-125 (399)
127 PRK13185 chlL protochlorophyll 28.6 60 0.0013 31.3 3.5 13 56-69 31-43 (270)
128 PF05582 Peptidase_U57: YabG p 28.6 51 0.0011 32.7 3.0 27 336-363 144-170 (287)
129 TIGR02298 HpaD_Fe 3,4-dihydrox 28.4 2.6E+02 0.0057 27.6 8.1 61 327-387 153-219 (282)
130 PRK13232 nifH nitrogenase redu 28.1 56 0.0012 31.7 3.3 14 56-69 30-43 (273)
131 CHL00175 minD septum-site dete 28.1 62 0.0013 31.4 3.6 17 275-291 45-61 (281)
132 PRK07854 enoyl-CoA hydratase; 27.9 3.9E+02 0.0084 25.5 9.0 67 324-398 22-95 (243)
133 PRK08840 replicative DNA helic 27.8 1.6E+02 0.0034 31.4 6.8 44 343-395 325-375 (464)
134 cd01827 sialate_O-acetylestera 27.2 2E+02 0.0044 25.5 6.6 39 344-387 65-104 (188)
135 PRK07773 replicative DNA helic 27.2 1.9E+02 0.0042 33.5 7.8 49 338-395 319-373 (886)
136 cd01443 Cdc25_Acr2p Cdc25 enzy 27.1 3.2E+02 0.0069 22.4 7.3 11 391-401 99-109 (113)
137 cd01973 Nitrogenase_VFe_beta_l 26.9 2.8E+02 0.006 29.4 8.4 62 333-404 73-140 (454)
138 PRK06749 replicative DNA helic 26.9 1.8E+02 0.0038 30.7 6.9 25 371-395 322-346 (428)
139 COG1121 ZnuC ABC-type Mn/Zn tr 26.6 2.2E+02 0.0049 27.8 7.0 51 334-395 145-195 (254)
140 TIGR00640 acid_CoA_mut_C methy 26.6 3.8E+02 0.0083 23.2 7.9 14 341-354 48-61 (132)
141 COG2390 DeoR Transcriptional r 26.3 5.2E+02 0.011 26.2 9.8 51 314-365 172-225 (321)
142 PRK04328 hypothetical protein; 26.3 2.1E+02 0.0046 27.4 6.9 55 334-397 116-171 (249)
143 TIGR01968 minD_bact septum sit 26.2 77 0.0017 30.0 3.8 14 56-69 31-44 (261)
144 TIGR02932 vnfK_nitrog V-contai 26.0 2.2E+02 0.0048 30.2 7.4 74 333-416 76-155 (457)
145 PF01120 Alpha_L_fucos: Alpha- 26.0 3.7E+02 0.008 27.3 8.9 31 328-358 187-218 (346)
146 cd02068 radical_SAM_B12_BD B12 25.9 2E+02 0.0043 24.2 6.0 20 335-354 28-47 (127)
147 PRK02842 light-independent pro 25.8 2.9E+02 0.0063 28.9 8.3 59 332-403 82-143 (427)
148 PRK14477 bifunctional nitrogen 25.6 2.9E+02 0.0062 32.2 8.8 23 333-355 558-580 (917)
149 PRK05724 acetyl-CoA carboxylas 25.6 2.6E+02 0.0056 28.3 7.4 49 369-418 132-188 (319)
150 COG0299 PurN Folate-dependent 25.4 80 0.0017 29.7 3.5 25 331-356 64-88 (200)
151 cd01826 acyloxyacyl_hydrolase_ 25.2 1.9E+02 0.0041 29.1 6.3 45 345-389 121-166 (305)
152 cd00529 RuvC_resolvase Hollida 24.9 4.9E+02 0.011 23.0 12.1 82 331-420 44-133 (154)
153 TIGR00381 cdhD CO dehydrogenas 24.9 5E+02 0.011 27.1 9.4 85 328-421 128-220 (389)
154 cd01976 Nitrogenase_MoFe_alpha 24.9 1.9E+02 0.0042 30.2 6.7 57 333-402 85-143 (421)
155 cd08165 MPP_MPPE1 human MPPE1 24.8 3.2E+02 0.0069 24.2 7.3 16 337-352 29-44 (156)
156 TIGR01281 DPOR_bchL light-inde 24.8 77 0.0017 30.5 3.5 13 56-69 29-41 (268)
157 TIGR00583 mre11 DNA repair pro 24.5 3.2E+02 0.0069 28.6 8.2 49 327-383 24-72 (405)
158 PF04321 RmlD_sub_bind: RmlD s 24.5 23 0.00049 34.9 -0.3 54 338-395 43-99 (286)
159 PF02310 B12-binding: B12 bind 24.3 1.5E+02 0.0033 24.4 4.9 18 338-355 43-60 (121)
160 cd02032 Bchl_like This family 24.1 81 0.0018 30.4 3.5 13 56-69 29-41 (267)
161 PRK09822 lipopolysaccharide co 23.9 1.2E+02 0.0025 29.5 4.3 47 31-77 161-209 (269)
162 PRK10425 DNase TatD; Provision 23.8 6.7E+02 0.015 24.3 10.0 110 259-394 15-126 (258)
163 COG0455 flhG Antiactivator of 23.7 2.1E+02 0.0046 28.0 6.4 82 273-360 31-126 (262)
164 PF00581 Rhodanese: Rhodanese- 23.7 1.9E+02 0.004 23.0 5.2 18 385-402 92-109 (113)
165 TIGR00734 hisAF_rel hisA/hisF 23.4 1.8E+02 0.0038 27.6 5.6 36 255-291 32-67 (221)
166 PF02701 zf-Dof: Dof domain, z 23.3 29 0.00063 26.4 0.1 13 32-44 14-26 (63)
167 cd01121 Sms Sms (bacterial rad 23.3 1.8E+02 0.0038 30.1 6.0 47 341-396 153-207 (372)
168 PRK13232 nifH nitrogenase redu 23.2 72 0.0016 30.9 3.0 14 275-288 30-43 (273)
169 PLN03229 acetyl-coenzyme A car 23.1 2.7E+02 0.0058 31.5 7.4 50 368-418 222-279 (762)
170 PRK06904 replicative DNA helic 23.0 2.6E+02 0.0056 29.9 7.3 24 372-395 357-380 (472)
171 cd01834 SGNH_hydrolase_like_2 22.8 5.1E+02 0.011 22.6 8.9 90 296-393 60-151 (191)
172 PRK14477 bifunctional nitrogen 22.7 2E+02 0.0044 33.4 6.9 57 333-402 99-156 (917)
173 TIGR01282 nifD nitrogenase mol 22.6 2.4E+02 0.0051 30.1 6.9 57 333-402 118-176 (466)
174 TIGR03371 cellulose_yhjQ cellu 22.5 89 0.0019 29.4 3.4 13 56-69 31-43 (246)
175 TIGR01862 N2-ase-Ialpha nitrog 22.4 2.2E+02 0.0047 30.1 6.6 57 333-402 104-162 (443)
176 cd03110 Fer4_NifH_child This p 22.3 56 0.0012 29.3 1.9 14 275-288 25-38 (179)
177 cd07384 MPP_Cdc1_like Saccharo 22.2 3.5E+02 0.0076 24.4 7.1 57 336-400 35-97 (171)
178 PLN02267 enoyl-CoA hydratase/i 22.2 3.9E+02 0.0085 25.5 7.8 16 326-341 23-38 (239)
179 cd07402 MPP_GpdQ Enterobacter 22.1 1.9E+02 0.0041 27.0 5.6 60 327-401 20-81 (240)
180 COG3172 NadR Predicted ATPase/ 22.0 5.3E+02 0.011 23.9 7.9 78 337-418 105-184 (187)
181 PF06792 UPF0261: Uncharacteri 21.9 2.1E+02 0.0044 30.1 6.0 63 366-428 309-386 (403)
182 PRK13230 nitrogenase reductase 21.9 95 0.0021 30.2 3.5 18 275-293 30-47 (279)
183 TIGR03167 tRNA_sel_U_synt tRNA 21.8 2.9E+02 0.0062 27.8 7.0 22 380-402 90-111 (311)
184 COG1938 Archaeal enzymes of AT 21.7 4.1E+02 0.0089 25.9 7.7 84 262-362 31-123 (244)
185 TIGR03446 mycothiol_Mca mycoth 21.7 1E+02 0.0022 30.7 3.6 19 334-352 109-127 (283)
186 TIGR01287 nifH nitrogenase iro 21.6 1.1E+02 0.0023 29.7 3.8 14 56-69 29-42 (275)
187 PRK05279 N-acetylglutamate syn 21.6 2.9E+02 0.0063 28.9 7.3 64 328-403 7-70 (441)
188 PRK10966 exonuclease subunit S 21.5 4.6E+02 0.01 27.3 8.7 25 328-353 22-46 (407)
189 TIGR00416 sms DNA repair prote 21.5 2.5E+02 0.0054 29.8 6.8 48 340-396 164-219 (454)
190 PRK07004 replicative DNA helic 21.4 1.9E+02 0.0042 30.7 6.0 44 343-395 320-370 (460)
191 TIGR02655 circ_KaiC circadian 21.2 2.6E+02 0.0057 29.8 7.0 49 340-397 347-397 (484)
192 cd01393 recA_like RecA is a b 21.2 3.1E+02 0.0067 25.3 6.8 60 327-396 96-166 (226)
193 cd03110 Fer4_NifH_child This p 21.1 66 0.0014 28.8 2.1 14 56-69 25-38 (179)
194 PF13277 YmdB: YmdB-like prote 21.1 1.8E+02 0.004 28.4 5.2 58 331-402 12-69 (253)
195 PF00977 His_biosynth: Histidi 21.0 1.3E+02 0.0028 28.7 4.1 49 234-289 10-59 (229)
196 TIGR02016 BchX chlorophyllide 21.0 1.1E+02 0.0023 30.5 3.7 14 56-69 29-42 (296)
197 PF06925 MGDG_synth: Monogalac 20.9 1E+02 0.0023 27.5 3.3 24 329-352 72-95 (169)
198 cd02036 MinD Bacterial cell di 20.7 1.2E+02 0.0026 26.7 3.7 17 275-291 29-45 (179)
199 PRK00039 ruvC Holliday junctio 20.7 6.3E+02 0.014 22.8 12.0 82 331-420 46-135 (164)
200 cd06361 PBP1_GPC6A_like Ligand 20.6 3.4E+02 0.0075 27.9 7.6 102 268-401 166-270 (403)
201 cd01822 Lysophospholipase_L1_l 20.6 5.6E+02 0.012 22.1 10.7 77 297-394 64-140 (177)
202 cd02904 Macro_H2A_like Macro d 20.5 1.7E+02 0.0037 27.2 4.7 65 370-434 108-178 (186)
203 COG2755 TesA Lysophospholipase 20.4 4.1E+02 0.0089 24.1 7.4 47 340-389 70-118 (216)
204 PRK06688 enoyl-CoA hydratase; 20.3 4.5E+02 0.0098 25.1 7.9 86 297-397 12-104 (259)
205 PRK12677 xylose isomerase; Pro 20.2 9.7E+02 0.021 24.8 11.3 77 338-416 72-163 (384)
206 PRK04452 acetyl-CoA decarbonyl 20.1 9.2E+02 0.02 24.4 10.4 72 340-421 83-156 (319)
No 1
>PTZ00063 histone deacetylase; Provisional
Probab=100.00 E-value=6.7e-78 Score=614.26 Aligned_cols=312 Identities=20% Similarity=0.357 Sum_probs=278.3
Q ss_pred CCceEEEEccccccccccCCCCCCCChHHHHHHHhhchhhHHHHHHhcCCCCCCeeeCCCCCCHHHHHhhcCHHHHHHHH
Q psy8529 108 TRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLK 187 (436)
Q Consensus 108 ~~~~~ivy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~~~~~~~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yi~~l~ 187 (436)
+.|++++|||+|..|.++ .+|||+|.|++.++ ++|.+.|+...+++++|++|+.++|++||+++||++|+
T Consensus 3 ~~~v~~~yd~~~~~h~~g--~~HP~~P~Rl~~~~--------~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~L~ 72 (436)
T PTZ00063 3 RKRVSYFYDPDIGSYYYG--PGHPMKPQRIRMAH--------ALILSYDLYKHMEIYRPHKSVEPELVLFHDEEYVDFLS 72 (436)
T ss_pred CceEEEEECccccCcCCc--CcCCcChHHHHHHH--------HHHHhCCCcccCeEecCCCCCHHHHHHhCCHHHHHHHH
Confidence 567999999999999987 47999999999999 99999999998999999999999999999999999998
Q ss_pred hhhhhhhhh---ccCCcccc--CCccccccchHHHHHHhccHHHHHHHhhh--cCeEEEccCCCCCCCcCCCCCcccccc
Q psy8529 188 WSFNVAAIS---EVCPLVAV--PNYFVQKCYLRPMRYHVGGTLEAGFLALR--RGWSINIGGGFHHASETKGGGFCAYAD 260 (436)
Q Consensus 188 ~~~~~~~~~---e~~~~~~~--~d~~v~~~t~~~a~~~~gg~~~aa~~~~~--~g~a~~~~~G~HHA~~~~~~GFC~fNn 260 (436)
+........ ......++ +||++++++++.+++++||++.||+.+++ .++|+||+||+|||++++++|||+|||
T Consensus 73 ~~~~~~~~~~~~~~~~f~lg~~~D~pv~~gl~~~a~~aaGgsl~Aa~~l~~g~~~iAin~~GG~HHA~~~~A~GFC~~Nd 152 (436)
T PTZ00063 73 SISPENYRDFTYQLKRFNVGEATDCPVFDGLFEFQQSCAGASIDGAYKLNNHQADICVNWSGGLHHAKRSEASGFCYIND 152 (436)
T ss_pred HhChhhcccchhhhhhcccCCCCCCCcccHHHHHHHHHHhHHHHHHHHHHcCCCCEEeeCCCCCCCCccCCCCceeeecH
Confidence 754321100 00111233 59999999999999999999999998876 369999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEEecccccCccceeccccCCCEEEEEecCCC--------------CCCCCeeEeeeCCCCCC
Q psy8529 261 ISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITS--------------KAKEAIRCRIELAPYTE 326 (436)
Q Consensus 261 vAIAa~~l~~~~g~~rV~IvD~D~HhGnGtq~if~~d~~V~~~SiH~~~--------------~~~~g~~~NvpL~~g~~ 326 (436)
|||||++|++. .+||+|||||||||||||+||+++|+|+|+|+|+.+ +.++++++|||||+|++
T Consensus 153 iaiAi~~L~~~--~~RVliID~DvHHGdGtqe~F~~~~~VltvS~H~~~~ffPgtG~~~e~G~g~G~g~~vNvPL~~G~~ 230 (436)
T PTZ00063 153 IVLGILELLKY--HARVMYIDIDVHHGDGVEEAFYVTHRVMTVSFHKFGDFFPGTGDVTDIGVAQGKYYSVNVPLNDGID 230 (436)
T ss_pred HHHHHHHHHHh--CCeEEEEeCCCCCCcchHHHhccCCCeEEEEeccCCCcCCCCCCccccCCCCCCceEEEeeCCCCCC
Confidence 99999999986 479999999999999999999999999999999431 12457899999999999
Q ss_pred chHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcch-H
Q psy8529 327 DQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT-A 405 (436)
Q Consensus 327 d~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~~-~ 405 (436)
|++|+.+|+++|.|++++|+||+||+|||+|+|.+||||.|+||++||.++.+++ +++++|+++++||||++.+ +
T Consensus 231 D~~Y~~~f~~ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g~~~~~~~~----~~~~~pil~l~gGGY~~~~la 306 (436)
T PTZ00063 231 DDSFVDLFKPVISKCVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKGHAACVEFV----RSLNIPLLVLGGGGYTIRNVA 306 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHH----HhcCCCEEEEeCccCCchHHH
Confidence 9999999999999999999999999999999999999999999999999876654 5569999999999999865 9
Q ss_pred HHHHHHHHHHHcc--CCC-CCCccccccccCCC
Q psy8529 406 RIIADSILNLADL--GLI-SRPYNIWFIYYTSK 435 (436)
Q Consensus 406 ~~~~~~v~~l~~~--~l~-~~~~~~~~~~~~~~ 435 (436)
++|+..+..++|+ +++ .||+|+||+||+|.
T Consensus 307 r~w~~~t~~~~~~~~~~~~~iP~~~~~~~~~~~ 339 (436)
T PTZ00063 307 RCWAYETGVILNKHDEMSDQISLNDYYDYYAPD 339 (436)
T ss_pred HHHHHHHHHHhCCcccCCccCCCCcchhhcCCC
Confidence 9999999999997 466 89999999999985
No 2
>PTZ00346 histone deacetylase; Provisional
Probab=100.00 E-value=3.6e-77 Score=605.25 Aligned_cols=313 Identities=23% Similarity=0.301 Sum_probs=274.4
Q ss_pred cCCceEEE----EccccccccccCCCCCCCChHHHHHHHhhchhhHHHHHHhcCCCCCCeeeCCCCCCHHHHHhhcCHHH
Q psy8529 107 VTRPWPIV----YRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKY 182 (436)
Q Consensus 107 ~~~~~~iv----y~~~~~~h~~~~~~~Hpe~p~R~~~i~~~~~~~~~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Y 182 (436)
.++++++| |-+++..+.++ .+|||+|.|++.++ ++|++.|+...+++++|++|+.++|++||+++|
T Consensus 18 ~~~~~~~~~~~~y~~~~~~~~~~--~~HPe~P~Rl~~~~--------~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~Y 87 (429)
T PTZ00346 18 SRGRVALIDTSGYASDMNISAFV--PQHAMKPYRVLAAM--------EIVRSLKIDAHCRTVVPPLVKVEELMAYHTDTY 87 (429)
T ss_pred ccceeEEEecCccccccccccCC--CcCCCCHHHHHHHH--------HHHHhcCCcccCeeecCCCCCHHHHHHhCCHHH
Confidence 44677899 55566666666 47999999999999 999999998889999999999999999999999
Q ss_pred HHHHHhhhhhhh--hhccCCccccCCccccccchHHHHHHhccHHHHHHHhhhc--CeEEEccCCCCCCCcCCCCCcccc
Q psy8529 183 LKSLKWSFNVAA--ISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRR--GWSINIGGGFHHASETKGGGFCAY 258 (436)
Q Consensus 183 i~~l~~~~~~~~--~~e~~~~~~~~d~~v~~~t~~~a~~~~gg~~~aa~~~~~~--g~a~~~~~G~HHA~~~~~~GFC~f 258 (436)
|++|++.+.... ..+.....+++||++++++|+++++++||++.|++.+++. ++|++|+||+|||++++++|||+|
T Consensus 88 I~~l~~~~~~~~~~~~~~~~~~~d~Dtpv~~~~~~~a~laaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~f 167 (429)
T PTZ00346 88 LANLGLHSCRSWLWNAETSKVFFSGDCPPVEGLMEHSIATASGTLMGAVLLNSGQVDVAVHWGGGMHHSKCGECSGFCYV 167 (429)
T ss_pred HHHHHHhcccccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEeCCCCcCcCCCCCCCcchHH
Confidence 999986321110 0112223467899999999999999999999999998853 589999999999999999999999
Q ss_pred ccHHHHHHHHHhcCCCeEEEEEecccccCccceeccccCCCEEEEEecCCC---------------CCCCCeeEeeeCCC
Q psy8529 259 ADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITS---------------KAKEAIRCRIELAP 323 (436)
Q Consensus 259 NnvAIAa~~l~~~~g~~rV~IvD~D~HhGnGtq~if~~d~~V~~~SiH~~~---------------~~~~g~~~NvpL~~ 323 (436)
||+||||++|+++ .+||+|||||||||||||+|||+||+|+|+|+|+.+ +.+.|+++|||||+
T Consensus 168 NdvAIAa~~ll~~--~~RVliID~DVHHGnGTqeiF~~dp~Vl~vSiHq~~~~fyPgtG~~~e~G~g~G~g~~vNVPL~~ 245 (429)
T PTZ00346 168 NDIVLGILELLKC--HDRVLYVDIDMHHGDGVDEAFCTSDRVFTLSLHKFGESFFPGTGHPRDVGYGRGRYYSMNLAVWD 245 (429)
T ss_pred hHHHHHHHHHHHc--CCeEEEEeCCCCCCchHHHHHcCCCCeEEEEecCCCCCCCCCCCCccccCCCCCceeEEeeeCCC
Confidence 9999999999986 579999999999999999999999999999999431 22356899999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcc
Q psy8529 324 YTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403 (436)
Q Consensus 324 g~~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~ 403 (436)
|++|++|+.+|+++|.|++++|+||+||||||||+|.+||||.|+||++||.++++.+. ++++|++++|||||++.
T Consensus 246 G~~D~~Yl~~f~~ii~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~LT~~g~~~~~~~l~----~~~~plv~vleGGY~~~ 321 (429)
T PTZ00346 246 GITDFYYLGLFEHALHSIVRRYSPDAIVLQCGADSLAGDRLGLLNLSSFGHGQCVQAVR----DLGIPMLALGGGGYTIR 321 (429)
T ss_pred CcCHHHHHHHHHHHHHHHHHhcCCCEEEEECCccCCCCCCCCCceeCHHHHHHHHHHHH----hcCCCEEEEeCCcCCcc
Confidence 99999999999999999999999999999999999999999999999999999888765 45899999999999986
Q ss_pred h-HHHHHHHHHHHHccCCCC---CC--ccccccccCCC
Q psy8529 404 T-ARIIADSILNLADLGLIS---RP--YNIWFIYYTSK 435 (436)
Q Consensus 404 ~-~~~~~~~v~~l~~~~l~~---~~--~~~~~~~~~~~ 435 (436)
. +++|+..+..++|+++++ || +++|++||++.
T Consensus 322 ~lar~w~~~t~~l~g~~i~~~~~lp~~~~~~~~~~~~~ 359 (429)
T PTZ00346 322 NVAKLWAYETSILTGHPLPPNTVLPVAEMPLSGWLFQD 359 (429)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCCCchhhhhcCC
Confidence 5 999999999999999882 45 67888888764
No 3
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.6e-75 Score=583.58 Aligned_cols=296 Identities=25% Similarity=0.365 Sum_probs=270.2
Q ss_pred ceEEEEccccccccccCCCCCCCChHHHHHHHhhchhhHHHHHHhcCCCCCCeeeCCCCCCHHHHHhhcCHHHHHHHHhh
Q psy8529 110 PWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWS 189 (436)
Q Consensus 110 ~~~ivy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~~~~~~~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yi~~l~~~ 189 (436)
++.++|++.+..|..+ .+|||+|.|++.+. ++|++.++...+++++|++++.++|++||+++||++|++.
T Consensus 3 ~~~~~~~~~~~~~~~~--~~Hpe~p~R~~~~~--------~~l~~~~~~~~~~~~~p~~~~~~~l~~vH~~~yv~~l~~~ 72 (340)
T COG0123 3 KTALIYHPEFLEHEPP--PGHPENPDRLRLIL--------ELLESSGLPDSLELVEPRPATLEELLLVHSPDYVEFLESL 72 (340)
T ss_pred cceEeeCHHHhcCCCC--CCCCCChHHHHHHH--------HHHHhcCccccccccCCCcCCHHHHHhhCCHHHHHHHHHh
Confidence 5689999999999876 68999999999999 9999999888889999999999999999999999999976
Q ss_pred hhhhhhhccCCccccCCccccccchHHHHHHhccHHHHHHHhhhc--CeEEEccCCCCCCCcCCCCCccccccHHHHHHH
Q psy8529 190 FNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRR--GWSINIGGGFHHASETKGGGFCAYADISLLVKL 267 (436)
Q Consensus 190 ~~~~~~~e~~~~~~~~d~~v~~~t~~~a~~~~gg~~~aa~~~~~~--g~a~~~~~G~HHA~~~~~~GFC~fNnvAIAa~~ 267 (436)
+..+ +...++.||++++.+|+++++++|+++.|++.+++. ..+++..||+|||++++++|||+|||+||||++
T Consensus 73 ~~~~-----~~~~~d~d~~~s~~~~~~a~~a~G~al~A~~~v~~g~~~~~~~~rppgHHA~~~~a~GFC~fNn~Aiaa~~ 147 (340)
T COG0123 73 SEEE-----GYGNLDGDTPVSPGTYEAARLAAGGALTAVDAVLEGEDNAFALVRPPGHHAGRDRASGFCLFNNVAIAAKY 147 (340)
T ss_pred cccc-----ccccccCCCccChHHHHHHHHHhhHHHHHHHHHHcCccceEEECCCCcccccCCCCceeeeecHHHHHHHH
Confidence 5431 124678999999999999999999999999998874 466666666699999999999999999999999
Q ss_pred HHhcCCCeEEEEEecccccCccceeccccCCCEEEEEecCCC-----CC---------CCCeeEeeeCCCCCCchHHHHH
Q psy8529 268 LFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITS-----KA---------KEAIRCRIELAPYTEDQHYLEK 333 (436)
Q Consensus 268 l~~~~g~~rV~IvD~D~HhGnGtq~if~~d~~V~~~SiH~~~-----~~---------~~g~~~NvpL~~g~~d~~yl~~ 333 (436)
|+++ +.+||+|||||+|||||||+|||+||+|+|+|+|+++ +. ++|+++|||||+|++|++|+.+
T Consensus 148 l~~~-~~~RVaIiD~DvHHGnGTqeify~~~~V~~~S~H~~~~~~yPgtg~~~e~g~g~~g~~vNiPLp~g~~d~~y~~a 226 (340)
T COG0123 148 LLKK-GVKRVAIIDFDVHHGNGTQEIFYDDDDVLTVSLHQDGRPFYPGTGGADEIGEGKEGNNVNIPLPPGTGDDSYLEA 226 (340)
T ss_pred HHHc-CCCcEEEEEecCCCChhhHHHHccCCCeEEEeccCCCCCCCCcCCCccccccCcccceEeeecCCCCCcHHHHHH
Confidence 9998 8999999999999999999999999999999999631 11 1479999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcc-hHHHHHHHH
Q psy8529 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ-TARIIADSI 412 (436)
Q Consensus 334 ~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~-~~~~~~~~v 412 (436)
|++++.|++++|+||+||||||||+|.+||||+|+||+++|.++++.+++++..+++|+++||||||+.+ .++.+...+
T Consensus 227 ~~~~v~~~~~~f~PdlvivsaG~D~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~vleGGY~~~~l~~~~~~~~ 306 (340)
T COG0123 227 LEEIVLPLLEEFKPDLVIVSAGFDAHRGDPLGRLNLTEEGYAKIGRAVRKLAEGYGGPVVAVLEGGYNLDALARSLVAFL 306 (340)
T ss_pred HHHHHHHHHHhcCCCEEEEecCcccCCCCccceeecCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996 588888999
Q ss_pred HHHHccCCC
Q psy8529 413 LNLADLGLI 421 (436)
Q Consensus 413 ~~l~~~~l~ 421 (436)
..|.+.+.+
T Consensus 307 ~~l~~~~~~ 315 (340)
T COG0123 307 AGLAGLVEE 315 (340)
T ss_pred HHHcCCCcc
Confidence 999997655
No 4
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=100.00 E-value=3e-73 Score=566.92 Aligned_cols=282 Identities=28% Similarity=0.448 Sum_probs=222.5
Q ss_pred ccccccccccCCCCCCCChHHHHHHHhhchhhHHHHHHhc-CCCCCCeeeCCCCCCHHHHHhhcCHHHHHHHHhhhhhhh
Q psy8529 116 RPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEA-KFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAA 194 (436)
Q Consensus 116 ~~~~~~h~~~~~~~Hpe~p~R~~~i~~~~~~~~~~~L~~~-gl~~~~~~~~p~~a~~e~l~~vHs~~Yi~~l~~~~~~~~ 194 (436)
||.|. |..+ +.|||+|+|++.+. +.|.+. ++++. ++++.++|++|||++||++|++.+....
T Consensus 1 ~~~~~-~~~~--~~Hpe~p~R~~~i~--------~~L~~~~~l~~~------~~a~~~~L~~vH~~~Yv~~l~~~~~~~~ 63 (311)
T PF00850_consen 1 HPQYQ-HQLG--DGHPESPERLESIV--------EALKESYGLLPR------RPATDEELLRVHDPEYVDFLESASKEAK 63 (311)
T ss_dssp ----T-T-CC--TTSSSCTHHHHHHH--------HHHHHTTTGGGG----------HHHHTTTS-HHHHHHHHHHHHHTS
T ss_pred CCccc-CCCC--CCcCCCHHHHHHHH--------HHHHHhcCCCCC------CCCCHHHHHHcCCHHHHHHHHHhccccc
Confidence 46676 4443 68999999999999 889875 66533 8899999999999999999997654332
Q ss_pred hhc-c-----CCccccCCccccccchHHHHHHhccHHHHHHHhhh----cCeEEEccCCCCCCCcCCCCCccccccHHHH
Q psy8529 195 ISE-V-----CPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALR----RGWSINIGGGFHHASETKGGGFCAYADISLL 264 (436)
Q Consensus 195 ~~e-~-----~~~~~~~d~~v~~~t~~~a~~~~gg~~~aa~~~~~----~g~a~~~~~G~HHA~~~~~~GFC~fNnvAIA 264 (436)
..+ . ....-+.||++++.+++++++++||++.|++.+++ +++|+++||| |||++++++|||+|||||||
T Consensus 64 ~~~~~~~~~~~~~~~~~dt~~~~~~~~~a~~a~g~~l~a~~~v~~g~~~~~~a~~rppg-HHA~~~~a~GFC~~Nnvaia 142 (311)
T PF00850_consen 64 EEEEAGSPEFPNILDDGDTPISPGSWEAARLAAGGTLEAADAVLSGEIKNAFALVRPPG-HHAERDRAMGFCYFNNVAIA 142 (311)
T ss_dssp GCTHHHHHHHCCBTSSSSSEBCTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEEEESS---TT-BTTBBBTTBSS-HHHHH
T ss_pred ccccccccccccccCCCCcceehHHHHHHHHHHHHHHHHHHhhhcccccceeeecCccc-cccCcCcCcceeeeccHHHH
Confidence 211 0 00001689999999999999999999999999984 5799997666 99999999999999999999
Q ss_pred HHHHHhcCCCeEEEEEecccccCccceeccccCCCEEEEEecCC-----C-C----------CCCCeeEeeeCCCCCCch
Q psy8529 265 VKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCIT-----S-K----------AKEAIRCRIELAPYTEDQ 328 (436)
Q Consensus 265 a~~l~~~~g~~rV~IvD~D~HhGnGtq~if~~d~~V~~~SiH~~-----~-~----------~~~g~~~NvpL~~g~~d~ 328 (436)
|++|++++|.+||+|||||+|||||||+|||+||+|+|+|+|+. + + .++|+++|||||+|++|+
T Consensus 143 a~~l~~~~~~~rV~iiD~DvHhGnGtq~if~~d~~V~~~SiH~~~~~~yP~~tG~~~e~G~~~g~g~~~NipL~~g~~d~ 222 (311)
T PF00850_consen 143 AKYLRKKYGLKRVAIIDFDVHHGNGTQEIFYDDPRVLYISIHQYPGNFYPFGTGFPDEIGEGKGKGYNLNIPLPPGTGDD 222 (311)
T ss_dssp HHHHHHTTTTSSEEEEE-SSS--HHHHHHTTT-SSEEEEEEEE-CTTSTTTSS--TT--ESGGGTTSEEEEEE-TTEBHH
T ss_pred HHHHhhccccceEEEEEeCCCCcccchhheeCCCCEEecCccccccccCCCcCCCccccCCCcccceeEecccccccchH
Confidence 99999988999999999999999999999999999999999952 2 1 135799999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcch-HHH
Q psy8529 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT-ARI 407 (436)
Q Consensus 329 ~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~~-~~~ 407 (436)
+|+.+|+++|.|++++|+||+||||||||+|++||+|.|+||+++|.+++++|++++.++++|++++|||||++++ +++
T Consensus 223 ~y~~~~~~~l~~~~~~f~P~~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGGY~~~~~~~~ 302 (311)
T PF00850_consen 223 EYLEAFEEILLPALEEFRPDLIVVSAGFDAHAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSVLEGGYNPESLARS 302 (311)
T ss_dssp HHHHHHHHHHHHHHHHHT-SEEEEEE-STTBTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-SSHHHHHHH
T ss_pred HHHHHHhhccccchhcccCcEEEEccCcccchhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEECCCCChhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998876699999999999975 556
Q ss_pred HHHHHHHH
Q psy8529 408 IADSILNL 415 (436)
Q Consensus 408 ~~~~v~~l 415 (436)
+...+.+|
T Consensus 303 ~~~~~~~L 310 (311)
T PF00850_consen 303 WAAVIAAL 310 (311)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555554
No 5
>KOG1342|consensus
Probab=100.00 E-value=2.4e-66 Score=506.13 Aligned_cols=313 Identities=23% Similarity=0.369 Sum_probs=282.5
Q ss_pred cCCceEEEEccccccccccCCCCCCCChHHHHHHHhhchhhHHHHHHhcCCCCCCeeeCCCCCCHHHHHhhcCHHHHHHH
Q psy8529 107 VTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSL 186 (436)
Q Consensus 107 ~~~~~~ivy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~~~~~~~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yi~~l 186 (436)
...|+.+.|+++.....++ .+||+.|.|++... .++...|+.+.+++.+|..|+.+|+.++||++||++|
T Consensus 5 ~k~~V~y~yd~~vg~~~Yg--~~hpmkP~R~~mth--------~Lv~~YgL~k~M~i~~p~~a~~~dm~~FHt~eYi~fL 74 (425)
T KOG1342|consen 5 IKRRVSYFYDPDVGNFHYG--QGHPMKPHRIRMTH--------SLVLNYGLYKKMEIYRPDKASAQDMTRFHTDEYINFL 74 (425)
T ss_pred CCceEEEEecCcccccccc--CCCCCCcceehhhh--------HHHHhcchhhceeeccCCCCCHHHHHhhchHHHHHHH
Confidence 4568999999998777777 58999999999999 9999999999999999999999999999999999999
Q ss_pred Hhhhhhhhh---hccCCccccCCccccccchHHHHHHhccHHHHHHHhhh--cCeEEEccCCCCCCCcCCCCCccccccH
Q psy8529 187 KWSFNVAAI---SEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALR--RGWSINIGGGFHHASETKGGGFCAYADI 261 (436)
Q Consensus 187 ~~~~~~~~~---~e~~~~~~~~d~~v~~~t~~~a~~~~gg~~~aa~~~~~--~g~a~~~~~G~HHA~~~~~~GFC~fNnv 261 (436)
++....... .+.....+..||++..++++.+++.+|||+.||..... ..+|+||+||.|||+++.++|||++|||
T Consensus 75 ~~V~p~n~~~~~~~~~~fNvg~DCPvF~gL~~fC~~~~GgSl~aa~kLn~~~~dIaINW~GGlHHAKK~eASGFCYvNDI 154 (425)
T KOG1342|consen 75 QSVTPENMETFNKELKQFNVGEDCPVFDGLYDYCQLYTGGSLNAAQKLNRGECDIAINWAGGLHHAKKSEASGFCYVNDI 154 (425)
T ss_pred hhCCcccccccchHHHhcCCCCCCccccCHHHHHHHhcccchHHHHHhCCCCceEEEecCcccccccccccCcceeehHH
Confidence 976443221 12333567799999999999999999999999986544 4599999999999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEEecccccCccceeccccCCCEEEEEec--C------CC-------CCCCCeeEeeeCCCCCC
Q psy8529 262 SLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETC--I------TS-------KAKEAIRCRIELAPYTE 326 (436)
Q Consensus 262 AIAa~~l~~~~g~~rV~IvD~D~HhGnGtq~if~~d~~V~~~SiH--~------~~-------~~~~g~~~NvpL~~g~~ 326 (436)
+++|..|+|. .+||++||+|+|||||+|++||..+||+|+|+| + ++ +.|+.|.+||||..|++
T Consensus 155 VL~ILeLlK~--h~RVLYIDIDvHHGDGVEeAFy~TDRVmTvSfHKyg~~fFPGTG~l~d~G~~kGkyyavNVPL~dGid 232 (425)
T KOG1342|consen 155 VLGILELLKY--HKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGPGFFPGTGDLSDIGAGKGKYYAVNVPLKDGID 232 (425)
T ss_pred HHHHHHHHHh--CCceEEEEecccCCccHHHHHhccceeEEEEEEeccCCCCCCCCcceeccCCCCceEEEccchhccCC
Confidence 9999999986 679999999999999999999999999999999 2 11 22345799999999999
Q ss_pred chHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcch-H
Q psy8529 327 DQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT-A 405 (436)
Q Consensus 327 d~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~~-~ 405 (436)
|+.|..+|++||.++++.|+|+.||+|||.|++.+|+||.||||.+|.+++.+.+++ +++|++++++|||++.. |
T Consensus 233 D~sy~~if~pIi~~v~e~f~P~AiVLQCGaDSL~gDRlgcFnLsi~Gh~~Cv~fvks----fn~pllvlGGGGYT~rNVA 308 (425)
T KOG1342|consen 233 DESYESIFKPIISKVMERFQPEAIVLQCGADSLAGDRLGCFNLSIKGHAECVKFVKS----FNLPLLVLGGGGYTLRNVA 308 (425)
T ss_pred cHHHHHHHHHHHHHHHHHhCCceEEEEcCCccccCCccceeeecchhHHHHHHHHHH----cCCcEEEecCCccchhhhH
Confidence 999999999999999999999999999999999999999999999999999888755 58999999999999875 9
Q ss_pred HHHHHHHHHHHccCCC-CCCccccccccCCC
Q psy8529 406 RIIADSILNLADLGLI-SRPYNIWFIYYTSK 435 (436)
Q Consensus 406 ~~~~~~v~~l~~~~l~-~~~~~~~~~~~~~~ 435 (436)
|+|+-..-.++++.++ +||+|+||+||+|.
T Consensus 309 RcWtYeT~v~~~~~~~~elP~n~y~~yF~PD 339 (425)
T KOG1342|consen 309 RCWTYETGVLLDQELPNELPYNDYFEYFGPD 339 (425)
T ss_pred HHHHHHhhhhcCccccccCCCccchhhhCCC
Confidence 9999999999999998 99999999999984
No 6
>KOG1344|consensus
Probab=100.00 E-value=2.1e-60 Score=437.44 Aligned_cols=312 Identities=54% Similarity=0.934 Sum_probs=296.9
Q ss_pred CCcccccCCceEEEEccccccccccCCCCCCCChHHHHHHHhhchhhHHHHHHhcCCCCCCeeeCCCCCCHHHHHhhcCH
Q psy8529 101 EPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTE 180 (436)
Q Consensus 101 ~~~~~~~~~~~~ivy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~~~~~~~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~ 180 (436)
+.++.++.+|++|||++.|..-+.+.++.||++..+|..+. +.|.+.+++....+++|.++|+|+|++|||+
T Consensus 6 kly~~vp~~k~pIvyS~~Y~i~FmGlEkLHPFDa~Kwg~v~--------kfL~~~~~l~d~~lvEp~e~t~e~L~rvHtr 77 (324)
T KOG1344|consen 6 KLYDAVPAGKLPIVYSRNYAIRFMGLEKLHPFDAAKWGHVH--------KFLCAMNLLTDETLVEPNEATKEDLLRVHTR 77 (324)
T ss_pred eecccCccccccEEecCccceeecchhhcCcCcccchhHHH--------HHHHHhccccccccccCcccCHHHHHhHhhH
Confidence 45677888999999999999999999999999999999999 8999999999889999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhccCCccccCCccccccchHHHHHHhccHHHHHHHhhhcCeEEEccCCCCCCCcCCCCCcccccc
Q psy8529 181 KYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYAD 260 (436)
Q Consensus 181 ~Yi~~l~~~~~~~~~~e~~~~~~~~d~~v~~~t~~~a~~~~gg~~~aa~~~~~~g~a~~~~~G~HHA~~~~~~GFC~fNn 260 (436)
+|++.++|..+.+.+.|.|+..+.|++++++..+.+.++.+|||++|+++|++.|||+|.+||||||..++++|||.+.|
T Consensus 78 ~YLkslr~s~~vA~I~EiP~v~flPn~~iqrk~LrPlR~QagGtilA~kLAle~GWAINvGGGFHHcss~rGGGFC~yAD 157 (324)
T KOG1344|consen 78 KYLKSLRWSIKVAQITEIPFVGFLPNCIIQRKLLRPLRLQAGGTILAAKLALERGWAINVGGGFHHCSSSRGGGFCAYAD 157 (324)
T ss_pred HHHHHhhccceeeEEEeccccccCchhhhhhhhccceeeccCceeehhhhhhhcCeEEeecCccceeccCCCCceeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEEecccccCccceeccccCCCEEEEEec------CCCCCCCCeeEeeeCCCCCCchHHHHHH
Q psy8529 261 ISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETC------ITSKAKEAIRCRIELAPYTEDQHYLEKI 334 (436)
Q Consensus 261 vAIAa~~l~~~~g~~rV~IvD~D~HhGnGtq~if~~d~~V~~~SiH------~~~~~~~g~~~NvpL~~g~~d~~yl~~~ 334 (436)
+.+|+..|-.+..+.|++|||+|+|+|||-+.-|.++ .|..+.++ ++..+++.....|.|..|+.|++||..+
T Consensus 158 Itl~I~~lFer~~isr~mivDLDAHQGNghErdf~~~-~vyi~d~ynr~iyp~D~~Ak~~Ir~kVEl~~gTeddeYLrkl 236 (324)
T KOG1344|consen 158 ITLAIFFLFERKAISRAMIVDLDAHQGNGHERDFEDD-AVYIFDMYNRFIYPRDHVAKESIRCKVELRNGTEDDEYLRKL 236 (324)
T ss_pred HHHHHHHHHhhhhhhheEEEecccccCCccccccccc-eeehhhhhhhhccchhHHHHHHhhheeeeecCCCchHHHHHH
Confidence 9999999988878999999999999999999999988 78888876 3445566777889999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcchHHHHHHHHHH
Q psy8529 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILN 414 (436)
Q Consensus 335 ~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~~~~~~~~~v~~ 414 (436)
++.+...+.+|+||+||+.||.|.+.+||||.+.+|++|.-++++.++++++..++|+|+++.|||-..+++.+++||.+
T Consensus 237 ~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGGY~K~sArvIaDSI~N 316 (324)
T KOG1344|consen 237 KRCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGGYLKASARVIADSIVN 316 (324)
T ss_pred HHHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCceehhhhhhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCC
Q psy8529 415 LADLGLI 421 (436)
Q Consensus 415 l~~~~l~ 421 (436)
|-.++|.
T Consensus 317 L~~qGLi 323 (324)
T KOG1344|consen 317 LRLQGLI 323 (324)
T ss_pred Hhhhccc
Confidence 9999875
No 7
>KOG1343|consensus
Probab=100.00 E-value=3.5e-54 Score=464.59 Aligned_cols=281 Identities=19% Similarity=0.215 Sum_probs=221.6
Q ss_pred CCCCCChHHHHHHHhhchhhHHHHHHhcCCCCCCeeeCCCCCCHHHHHhhcCHHHHHHHHhhhhhhhhhccCCc-cccCC
Q psy8529 128 KLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKWSFNVAAISEVCPL-VAVPN 206 (436)
Q Consensus 128 ~~Hpe~p~R~~~i~~~~~~~~~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yi~~l~~~~~~~~~~e~~~~-~~~~d 206 (436)
..||+.|.| .+ -.+. .|++..|+.+ |+.++++.||++.|+..+......+........ .....
T Consensus 463 ~~~~~~p~r---~~--------t~~~-~gl~~~c~r~----at~~el~~vHs~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (797)
T KOG1343|consen 463 SRSPESPAR---FT--------TGLH-TGLLGKCERI----ATLEELQLVHSEAHVLLYGSRKLLGDLSLKFESRLPCGG 526 (797)
T ss_pred cCCcccchh---hh--------cccc-cccccccccc----cchhhhhhcccchhhcccchhhhcccccchhhhhccccc
Confidence 356777777 21 1222 6666666655 999999999999999996522111111000000 01122
Q ss_pred ccccccchHHHHHHhccHHHHHHHh------hhcCeEEEccCCCCCCCcCCCCCccccccHHHHHHHHHhcCCCeEEEEE
Q psy8529 207 YFVQKCYLRPMRYHVGGTLEAGFLA------LRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIV 280 (436)
Q Consensus 207 ~~v~~~t~~~a~~~~gg~~~aa~~~------~~~g~a~~~~~G~HHA~~~~~~GFC~fNnvAIAa~~l~~~~g~~rV~Iv 280 (436)
..+++++|.....++|++..++..+ +.+|+|++|+|| |||.+..++|||+|||+|||+++++.....+||+|+
T Consensus 527 i~~~~dt~~~~~~ssga~~~av~~v~~~~~~~~~g~avvRppG-Hha~~~~a~gfc~fn~vaiaak~l~~~~~~~riliv 605 (797)
T KOG1343|consen 527 IGVDSDTWWNELHSSGAARLAVGCVIELAFKVASGFAVVRPPG-HHAEASTAMGFCFFNSVAIAAKLLQQRSKASRILIV 605 (797)
T ss_pred eeecccHHHHHHHHHHHHHHhcchhhhhhhhhhcceeEecCCc-cccccCCcceeeeecchhhhhHHhhhhhhhcceEEE
Confidence 3344555555555555555444433 224899999999 999999999999999999999999998668999999
Q ss_pred ecccccCccceeccccCCCEEEEEecCC----------------CCCCCCeeEeeeCCCCC-CchHHHHHHHHHHHHHHH
Q psy8529 281 DLDAHQGNGYEKDFMNETRIFIMETCIT----------------SKAKEAIRCRIELAPYT-EDQHYLEKIEAGLERSLR 343 (436)
Q Consensus 281 D~D~HhGnGtq~if~~d~~V~~~SiH~~----------------~~~~~g~~~NvpL~~g~-~d~~yl~~~~~~l~~~~~ 343 (436)
|||||||||||.+|+.||+|+|+|+|.. .+.+.|+++|||++.+. +|.+|+.+|+++++|+.+
T Consensus 606 dwDvhhgngtq~~f~~~~~vlyislhr~~~G~~fp~~g~~~e~g~~~g~g~~vNv~~~~~~~~D~ey~~a~~~vv~Pia~ 685 (797)
T KOG1343|consen 606 DWDVHHGNGTQQAFYSDPSVLYISLHRHDDGNFFPGSGAPDEVGKGEGVGFNVNVAWTGGLDPDAEYLAAFRTVVMPIAY 685 (797)
T ss_pred eecccCCcceeeeeccCccccccccchhccCCcCCCCCCchhcccccccceeecccccCCCCCCHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999821 12346899999999654 469999999999999999
Q ss_pred HhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcch-HHHHHHHHHHHHccCCCC
Q psy8529 344 SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT-ARIIADSILNLADLGLIS 422 (436)
Q Consensus 344 ~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~~-~~~~~~~v~~l~~~~l~~ 422 (436)
+|.||+|+||+|||+..+||+|+..+|.++|..+++.+..+| +++++.+|||||+..+ +++...|+.+|+|.+.+.
T Consensus 686 ~F~pd~VlvSagfDaa~~dplg~~~vt~~~~~~lt~~l~~la---gGRvv~~LEggy~lt~is~s~~~~~~~llg~~~p~ 762 (797)
T KOG1343|consen 686 EFNPDLVLVSAGFDAAEGDPLGGYKVTAECFGYLTQQLMGLA---GGRVVLALEGGYDLTAISDSAEACVRALLGDSLPP 762 (797)
T ss_pred HhCCCeEEEeccccccccCccccccccHhHHHHHHHHHHHhc---CCcEEEEecCCcchhhhhHHHHHHHHhccCCCCCC
Confidence 999999999999999999999999999999999999999998 9999999999999765 788889999999999887
Q ss_pred CCcccc
Q psy8529 423 RPYNIW 428 (436)
Q Consensus 423 ~~~~~~ 428 (436)
+++..+
T Consensus 763 ~~~~~~ 768 (797)
T KOG1343|consen 763 LSEAYL 768 (797)
T ss_pred cccccc
Confidence 766543
No 8
>KOG1343|consensus
Probab=100.00 E-value=1.3e-35 Score=320.67 Aligned_cols=303 Identities=18% Similarity=0.198 Sum_probs=248.2
Q ss_pred CCceEEEEcccccccc---ccCCCCCCCChHHHHHHHhhchhhHHHHHHhcCCCCCCeeeCC-CCCCHHHHHhhcCHHHH
Q psy8529 108 TRPWPIVYRPEYNVHF---FKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEP-QEVSEEQLLIAHTEKYL 183 (436)
Q Consensus 108 ~~~~~ivy~~~~~~h~---~~~~~~Hpe~p~R~~~i~~~~~~~~~~~L~~~gl~~~~~~~~p-~~a~~e~l~~vHs~~Yi 183 (436)
..++.++|++.+..|. +.+++ ++.|+|++.+. +.+.+.++...+.++.+ +.+++++++.+|+++|+
T Consensus 28 ~~~~~l~~~~~~~~h~~~~~~~~~--~~~~e~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~ke~~ 97 (797)
T KOG1343|consen 28 QIQKQLLFAEFQKQHENQQELLEK--EEKLERLRQIE--------EELERHRLEQPLLILRNKREAKESAVASVHVKEKL 97 (797)
T ss_pred hhhhhhhhhhhhhhhhcccccccc--hhhhhHHHHHH--------HHhhccCCccccccccchhhcccchhcccccHHHH
Confidence 3567899999999996 44432 58899999988 88988888877776666 99999999999999999
Q ss_pred HHHHhhhhhhhhhcc-CCccccCCccccccchHHHHHHhccHHHHHHHhh----hcCeEEEccCCCCCCCcCCCCCcccc
Q psy8529 184 KSLKWSFNVAAISEV-CPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLAL----RRGWSINIGGGFHHASETKGGGFCAY 258 (436)
Q Consensus 184 ~~l~~~~~~~~~~e~-~~~~~~~d~~v~~~t~~~a~~~~gg~~~aa~~~~----~~g~a~~~~~G~HHA~~~~~~GFC~f 258 (436)
+.+....+....... ....-.+..+.++.++..+..++++.+...+..+ .++.+..+++| |||+++...|||+|
T Consensus 98 ~~~~~t~~~~~e~~l~~~~~~~~~~~~~~~s~~~a~~a~~~~~~~~~~~~~~~~~n~~a~v~p~~-hhsep~~~~~~cl~ 176 (797)
T KOG1343|consen 98 QEFLLSKKMTAEEGLNHSSSRYPSLYYTSASHSSADQASGSLSGSYKAVLAGKASNGKADFRPPG-HHSEPNLKVGFCLF 176 (797)
T ss_pred HHHHhhhhhcchhhhhcccCCCCcceecCCchhhhcccCcccccccccccCCcccCccCcCCCCC-CccccchhcchhHH
Confidence 999865432221101 1112346678888999999999988887555543 36788888888 99999999999999
Q ss_pred ccHHHHHHHHHhcCCCeEEEEEecccccCccceecccc--CCCEEEEEecC------------------CCCCCCCeeEe
Q psy8529 259 ADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMN--ETRIFIMETCI------------------TSKAKEAIRCR 318 (436)
Q Consensus 259 NnvAIAa~~l~~~~g~~rV~IvD~D~HhGnGtq~if~~--d~~V~~~SiH~------------------~~~~~~g~~~N 318 (436)
||||++++....+...+||+|+|||+|||+|||..|++ |++|+++|+|. ..+.+.|+++|
T Consensus 177 n~Va~~~~~~~~~~~~rri~i~d~dvh~g~Gtq~~~~~~~d~~vl~~s~~r~e~~~f~P~~~~g~~~~~~~g~~~g~~~n 256 (797)
T KOG1343|consen 177 NNVAERRSSPLLRRKKRRILIVDWDVHHGPGTQPSSPNNGDQRVLYFSLHRLETGPFLPNITLGLATLRGGGPGLGQTGN 256 (797)
T ss_pred HHHHHHhhccccccccceeEeecccccCCCCCCCccCCCcccccccccchhcccCCcCCCCccchHHHhCcCCCcceeec
Confidence 99999999888776689999999999999999999999 99999999992 12345688999
Q ss_pred eeCCC-CCCchHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCC-CCCcccCHHHHHHHHHHHHHHHHhcC-CCEEEE
Q psy8529 319 IELAP-YTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDP-LGLLAISPQGIIRRDELVFMKARERR-VPIVML 395 (436)
Q Consensus 319 vpL~~-g~~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dp-lg~~~lt~~~~~~~~~~l~~~a~~~~-~~iv~v 395 (436)
+|+.. |++|.+|..+|..++.|...+|+||+|++|||||+..+|| +|.|..|+.+|.+++.+. .. .+ ++++++
T Consensus 257 l~~~~~g~~~~dy~~~~~~~~~~~~~efqp~Lv~~sag~dA~lg~~~~~~m~~tP~~~~~~~~~~-~~---~~r~~l~v~ 332 (797)
T KOG1343|consen 257 LPWNQVGMTDADYEAAFLHVLLPHASEFQPDLLLVSAGFDALLGDGPVGLMAQTPLGYAHRTSMH-RP---LGRGQLVVV 332 (797)
T ss_pred cchhhcCCcchhhhhhhhccCccchhhcCcceEEeeccccccccCcccCcccCCcccHHHHhccc-cc---cccCcccee
Confidence 99985 7899999999999999999999999999999999999997 699999999999988872 11 23 899999
Q ss_pred eCCCCCcchHHHHHHHHHHHHccCCCCCCc
Q psy8529 396 TSGGYLKQTARIIADSILNLADLGLISRPY 425 (436)
Q Consensus 396 leGGY~~~~~~~~~~~v~~l~~~~l~~~~~ 425 (436)
+||||+.+....-..+..+|+|++...+..
T Consensus 333 ~e~gy~le~l~~~~~~~~~llg~~~~~~~~ 362 (797)
T KOG1343|consen 333 LEGGYFLEKLAQSQLVLNKLLGKPIEQLRQ 362 (797)
T ss_pred cchhHHHHHHHHhhhhHHhhcCCCcccccc
Confidence 999999976211144778888998775443
No 9
>PTZ00346 histone deacetylase; Provisional
Probab=99.87 E-value=8.2e-23 Score=208.45 Aligned_cols=79 Identities=25% Similarity=0.370 Sum_probs=74.1
Q ss_pred cchHHHHHHHHHhC--CeEEEecCCCCCCCCCCCccccccccHHHHHHHHHhhCCCceEEEEeccCCCCC-----ccccC
Q psy8529 2 EYGTLEAGFLALRR--GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQFS-----DYYFP 74 (436)
Q Consensus 2 ~gg~~~a~~~~~~~--~~a~~~~~G~HHa~~~~~~GfC~~N~~a~a~~~~~~~~~~~rv~iiD~D~h~g~-----f~~~~ 74 (436)
+||++.||+.++++ ++|++|+||+|||++++++|||+|||+|||++++++++ +||+|||||||||| ||+||
T Consensus 128 aGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~fNdvAIAa~~ll~~~--~RVliID~DVHHGnGTqeiF~~dp 205 (429)
T PTZ00346 128 ASGTLMGAVLLNSGQVDVAVHWGGGMHHSKCGECSGFCYVNDIVLGILELLKCH--DRVLYVDIDMHHGDGVDEAFCTSD 205 (429)
T ss_pred HHHHHHHHHHHHcCCCCEEEeCCCCcCcCCCCCCCcchHHhHHHHHHHHHHHcC--CeEEEEeCCCCCCchHHHHHcCCC
Confidence 68999999999976 48999999999999999999999999999999999875 79999999999999 99999
Q ss_pred Cccccccc
Q psy8529 75 SAHSIKRK 82 (436)
Q Consensus 75 ~v~~~k~~ 82 (436)
+|+.++.+
T Consensus 206 ~Vl~vSiH 213 (429)
T PTZ00346 206 RVFTLSLH 213 (429)
T ss_pred CeEEEEec
Confidence 99999963
No 10
>PTZ00063 histone deacetylase; Provisional
Probab=99.87 E-value=1e-22 Score=208.90 Aligned_cols=79 Identities=23% Similarity=0.412 Sum_probs=74.4
Q ss_pred cchHHHHHHHHHhC--CeEEEecCCCCCCCCCCCccccccccHHHHHHHHHhhCCCceEEEEeccCCCCC-----ccccC
Q psy8529 2 EYGTLEAGFLALRR--GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQFS-----DYYFP 74 (436)
Q Consensus 2 ~gg~~~a~~~~~~~--~~a~~~~~G~HHa~~~~~~GfC~~N~~a~a~~~~~~~~~~~rv~iiD~D~h~g~-----f~~~~ 74 (436)
+||++.||+.++++ ++|+||+||+|||++++++|||+|||+|||+++|++.+ +||+|||||+|||| ||++|
T Consensus 111 aGgsl~Aa~~l~~g~~~iAin~~GG~HHA~~~~A~GFC~~NdiaiAi~~L~~~~--~RVliID~DvHHGdGtqe~F~~~~ 188 (436)
T PTZ00063 111 AGASIDGAYKLNNHQADICVNWSGGLHHAKRSEASGFCYINDIVLGILELLKYH--ARVMYIDIDVHHGDGVEEAFYVTH 188 (436)
T ss_pred HhHHHHHHHHHHcCCCCEEeeCCCCCCCCccCCCCceeeecHHHHHHHHHHHhC--CeEEEEeCCCCCCcchHHHhccCC
Confidence 79999999999875 49999999999999999999999999999999999876 79999999999999 99999
Q ss_pred Cccccccc
Q psy8529 75 SAHSIKRK 82 (436)
Q Consensus 75 ~v~~~k~~ 82 (436)
+|++++.+
T Consensus 189 ~VltvS~H 196 (436)
T PTZ00063 189 RVMTVSFH 196 (436)
T ss_pred CeEEEEec
Confidence 99999964
No 11
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=99.86 E-value=1.2e-22 Score=203.07 Aligned_cols=81 Identities=27% Similarity=0.417 Sum_probs=68.0
Q ss_pred cchHHHHHHHHHhC----CeEEEecCCCCCCCCCCCccccccccHHHHHHHHHhhCCCceEEEEeccCCCCC-----ccc
Q psy8529 2 EYGTLEAGFLALRR----GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQFS-----DYY 72 (436)
Q Consensus 2 ~gg~~~a~~~~~~~----~~a~~~~~G~HHa~~~~~~GfC~~N~~a~a~~~~~~~~~~~rv~iiD~D~h~g~-----f~~ 72 (436)
+||++.|++.++++ ++|+++||| |||++++++|||+|||+|||+++++++++++||+|||||+|||| ||+
T Consensus 96 ~g~~l~a~~~v~~g~~~~~~a~~rppg-HHA~~~~a~GFC~~Nnvaiaa~~l~~~~~~~rV~iiD~DvHhGnGtq~if~~ 174 (311)
T PF00850_consen 96 AGGTLEAADAVLSGEIKNAFALVRPPG-HHAERDRAMGFCYFNNVAIAAKYLRKKYGLKRVAIIDFDVHHGNGTQEIFYD 174 (311)
T ss_dssp HHHHHHHHHHHHTTSSSEEEEEESS---TT-BTTBBBTTBSS-HHHHHHHHHHHTTTTSSEEEEE-SSS--HHHHHHTTT
T ss_pred HHHHHHHHHhhhcccccceeeecCccc-cccCcCcCcceeeeccHHHHHHHHhhccccceEEEEEeCCCCcccchhheeC
Confidence 68999999999965 489998888 99999999999999999999999999888999999999999999 999
Q ss_pred cCCccccccch
Q psy8529 73 FPSAHSIKRKR 83 (436)
Q Consensus 73 ~~~v~~~k~~r 83 (436)
||+|+.++.++
T Consensus 175 d~~V~~~SiH~ 185 (311)
T PF00850_consen 175 DPRVLYISIHQ 185 (311)
T ss_dssp -SSEEEEEEEE
T ss_pred CCCEEecCccc
Confidence 99999999754
No 12
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.85 E-value=1.1e-21 Score=196.92 Aligned_cols=80 Identities=21% Similarity=0.317 Sum_probs=72.8
Q ss_pred cchHHHHHHHHHhC--CeEEEecCCCCCCCCCCCccccccccHHHHHHHHHhhCCCceEEEEeccCCCCC-----ccccC
Q psy8529 2 EYGTLEAGFLALRR--GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQFS-----DYYFP 74 (436)
Q Consensus 2 ~gg~~~a~~~~~~~--~~a~~~~~G~HHa~~~~~~GfC~~N~~a~a~~~~~~~~~~~rv~iiD~D~h~g~-----f~~~~ 74 (436)
+||++.|++.++++ ..++++.||.|||.+++++|||+|||+|||+++++++ +.+||+|||||+|||| ||+||
T Consensus 99 ~G~al~A~~~v~~g~~~~~~~~rppgHHA~~~~a~GFC~fNn~Aiaa~~l~~~-~~~RVaIiD~DvHHGnGTqeify~~~ 177 (340)
T COG0123 99 AGGALTAVDAVLEGEDNAFALVRPPGHHAGRDRASGFCLFNNVAIAAKYLLKK-GVKRVAIIDFDVHHGNGTQEIFYDDD 177 (340)
T ss_pred hhHHHHHHHHHHcCccceEEECCCCcccccCCCCceeeeecHHHHHHHHHHHc-CCCcEEEEEecCCCChhhHHHHccCC
Confidence 68999999999987 4666666666999999999999999999999999998 7899999999999999 99999
Q ss_pred Cccccccc
Q psy8529 75 SAHSIKRK 82 (436)
Q Consensus 75 ~v~~~k~~ 82 (436)
+|..++.+
T Consensus 178 ~V~~~S~H 185 (340)
T COG0123 178 DVLTVSLH 185 (340)
T ss_pred CeEEEecc
Confidence 99999863
No 13
>KOG1342|consensus
Probab=99.84 E-value=1.3e-21 Score=192.45 Aligned_cols=79 Identities=28% Similarity=0.413 Sum_probs=74.8
Q ss_pred CcchHHHHHHHHHhCC--eEEEecCCCCCCCCCCCccccccccHHHHHHHHHhhCCCceEEEEeccCCCCC-----cccc
Q psy8529 1 MEYGTLEAGFLALRRG--WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQFS-----DYYF 73 (436)
Q Consensus 1 ~~gg~~~a~~~~~~~~--~a~~~~~G~HHa~~~~~~GfC~~N~~a~a~~~~~~~~~~~rv~iiD~D~h~g~-----f~~~ 73 (436)
.+|||+.||+...++. +|+||+||+|||.++.|+|||++||++++|..|++.+ +||++||+|+|||| ||..
T Consensus 111 ~~GgSl~aa~kLn~~~~dIaINW~GGlHHAKK~eASGFCYvNDIVL~ILeLlK~h--~RVLYIDIDvHHGDGVEeAFy~T 188 (425)
T KOG1342|consen 111 YTGGSLNAAQKLNRGECDIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKYH--KRVLYIDIDVHHGDGVEEAFYTT 188 (425)
T ss_pred hcccchHHHHHhCCCCceEEEecCcccccccccccCcceeehHHHHHHHHHHHhC--CceEEEEecccCCccHHHHHhcc
Confidence 3799999999998875 9999999999999999999999999999999999998 69999999999999 9999
Q ss_pred CCcccccc
Q psy8529 74 PSAHSIKR 81 (436)
Q Consensus 74 ~~v~~~k~ 81 (436)
++||+++-
T Consensus 189 DRVmTvSf 196 (425)
T KOG1342|consen 189 DRVMTVSF 196 (425)
T ss_pred ceeEEEEE
Confidence 99999884
No 14
>KOG1344|consensus
Probab=99.65 E-value=8.1e-17 Score=149.50 Aligned_cols=68 Identities=65% Similarity=1.086 Sum_probs=66.6
Q ss_pred cchHHHHHHHHHhCCeEEEecCCCCCCCCCCCccccccccHHHHHHHHHhhCCCceEEEEeccCCCCC
Q psy8529 2 EYGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQFS 69 (436)
Q Consensus 2 ~gg~~~a~~~~~~~~~a~~~~~G~HHa~~~~~~GfC~~N~~a~a~~~~~~~~~~~rv~iiD~D~h~g~ 69 (436)
+|||++|+.+|++.|||+|.+||||||.++++.|||.+.|+.+++..+-.+..+.|++|||+|+||||
T Consensus 118 agGtilA~kLAle~GWAINvGGGFHHcss~rGGGFC~yADItl~I~~lFer~~isr~mivDLDAHQGN 185 (324)
T KOG1344|consen 118 AGGTILAAKLALERGWAINVGGGFHHCSSSRGGGFCAYADITLAIFFLFERKAISRAMIVDLDAHQGN 185 (324)
T ss_pred cCceeehhhhhhhcCeEEeecCccceeccCCCCceeehhhHHHHHHHHHhhhhhhheEEEecccccCC
Confidence 79999999999999999999999999999999999999999999999998888999999999999999
No 15
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=88.43 E-value=2.4 Score=38.60 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=46.8
Q ss_pred eeeCCCCCCchHHHHHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 318 RIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 318 NvpL~~g~~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
|..++ |.+-.+++..+++.+.+.+...+||+|+|..|. |....+.. ....+.+.|.+..+.+.+.++ .+.+++++
T Consensus 42 N~gi~-G~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~ND~~~~~~~-~~~~~~~~~~~~~~~ii~~~~-~~~~vi~~ 117 (193)
T cd01835 42 NLGVR-GDGSEDVAARWRAEWSRRGELNVPNRLVLSVGLNDTARGGRK-RPQLSARAFLFGLNQLLEEAK-RLVPVLVV 117 (193)
T ss_pred eecCC-CCCHHHHHHHHHHHHHhhcccCCCCEEEEEecCcccccccCc-ccccCHHHHHHHHHHHHHHHh-cCCcEEEE
Confidence 44433 444566777777666544445799999999999 66554221 234667778776666655543 35566654
No 16
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=87.77 E-value=6.7 Score=36.06 Aligned_cols=72 Identities=14% Similarity=0.192 Sum_probs=43.9
Q ss_pred HHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEE---eCCCCCcchHHHHHHHHHHH
Q psy8529 340 RSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML---TSGGYLKQTARIIADSILNL 415 (436)
Q Consensus 340 ~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~v---leGGY~~~~~~~~~~~v~~l 415 (436)
..+...+||+|++..|. |... .++.+.|.+-.+.+.+.+++.+.+++++ +-.-|+......+.+.+..+
T Consensus 65 ~~l~~~~pd~Vii~~GtND~~~-------~~~~~~~~~~l~~li~~~~~~~~~~ill~~~~P~~~~~~~~~~~~~~~~~~ 137 (191)
T PRK10528 65 ALLKQHQPRWVLVELGGNDGLR-------GFPPQQTEQTLRQIIQDVKAANAQPLLMQIRLPANYGRRYNEAFSAIYPKL 137 (191)
T ss_pred HHHHhcCCCEEEEEeccCcCcc-------CCCHHHHHHHHHHHHHHHHHcCCCEEEEEeecCCcccHHHHHHHHHHHHHH
Confidence 34556799999999998 5432 3678888777777777777766665544 22223322223344455555
Q ss_pred Hcc
Q psy8529 416 ADL 418 (436)
Q Consensus 416 ~~~ 418 (436)
+.+
T Consensus 138 a~~ 140 (191)
T PRK10528 138 AKE 140 (191)
T ss_pred HHH
Confidence 543
No 17
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=85.47 E-value=4 Score=36.27 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=32.4
Q ss_pred HhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHh--cCCCEEEE
Q psy8529 344 SFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARE--RRVPIVML 395 (436)
Q Consensus 344 ~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~--~~~~iv~v 395 (436)
.++||+|+++.|. |... ..+.+.|.+-.+.+.+.+++ .+.+++++
T Consensus 46 ~~~pd~vvl~~G~ND~~~-------~~~~~~~~~~l~~li~~~~~~~~~~~vi~~ 93 (169)
T cd01828 46 ALQPKAIFIMIGINDLAQ-------GTSDEDIVANYRTILEKLRKHFPNIKIVVQ 93 (169)
T ss_pred ccCCCEEEEEeeccCCCC-------CCCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 6799999999997 5532 25677777777777776666 46676664
No 18
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=84.37 E-value=6.1 Score=35.07 Aligned_cols=49 Identities=22% Similarity=0.390 Sum_probs=34.7
Q ss_pred HHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 340 RSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 340 ~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
..+..++||+|++..|. |... ..+.+.|.+-.+.+.+.+++.+.+++++
T Consensus 58 ~~~~~~~pd~v~i~~G~ND~~~-------~~~~~~~~~~l~~li~~~~~~~~~vil~ 107 (177)
T cd01822 58 ALLAQHKPDLVILELGGNDGLR-------GIPPDQTRANLRQMIETAQARGAPVLLV 107 (177)
T ss_pred HHHHhcCCCEEEEeccCccccc-------CCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 34556899999999997 4322 2567778777777777777767777665
No 19
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=83.79 E-value=6.6 Score=35.30 Aligned_cols=61 Identities=15% Similarity=0.269 Sum_probs=41.0
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 325 TEDQHYLEKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 325 ~~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
.+-.+++..+++. +.+.+||+|+++.|. |...+ .+.+.|.+-.+.+.+.+++.+.+++++.
T Consensus 42 ~~~~~~l~~l~~~----~~~~~~d~v~i~~G~ND~~~~-------~~~~~~~~~~~~li~~~~~~~~~~il~~ 103 (183)
T cd04501 42 DTTSQMLVRFYED----VIALKPAVVIIMGGTNDIIVN-------TSLEMIKDNIRSMVELAEANGIKVILAS 103 (183)
T ss_pred ccHHHHHHHHHHH----HHhcCCCEEEEEeccCccccC-------CCHHHHHHHHHHHHHHHHHCCCcEEEEe
Confidence 3344566655543 345799999999998 54332 3567777777777777777777766664
No 20
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=82.01 E-value=8.5 Score=34.51 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=39.8
Q ss_pred chHHHHHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 327 DQHYLEKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 327 d~~yl~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
.......+.+.+...+ .++||+||+..|. |... -..+.+.|.+..+.+.+.+++.+.+++++-
T Consensus 49 G~~~~~~~~~~~~~~~-~~~~d~vii~~G~ND~~~------~~~~~~~~~~~~~~~i~~i~~~~~~vil~~ 112 (185)
T cd01832 49 GRRTAQILAEQLPAAL-ALRPDLVTLLAGGNDILR------PGTDPDTYRADLEEAVRRLRAAGARVVVFT 112 (185)
T ss_pred cchHHHHHHHHHHHHH-hcCCCEEEEecccccccc------CCCCHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 3333333344444433 4799999999998 5432 146778788777777777666666766653
No 21
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=78.78 E-value=3.8 Score=35.68 Aligned_cols=74 Identities=19% Similarity=0.371 Sum_probs=44.6
Q ss_pred eeeCCCCCCchHHHHHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 318 RIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 318 NvpL~~g~~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
|.-.+ |.+-.+++..+++.+.+ +...+||+||++.|. |...+ .....+.+.|....+.+.+.++..+ +++++.
T Consensus 35 n~~~~-G~~~~~~~~~~~~~~~~-~~~~~~d~vvi~~G~ND~~~~---~~~~~~~~~~~~~l~~~i~~~~~~~-~vi~~~ 108 (179)
T PF13472_consen 35 NLGVS-GATSSDFLARLQRDVLR-FKDPKPDLVVISFGTNDVLNG---DENDTSPEQYEQNLRRIIEQLRPHG-PVILVS 108 (179)
T ss_dssp EEE-T-T-BHHHHHHHHHHHCHH-HCGTTCSEEEEE--HHHHCTC---TTCHHHHHHHHHHHHHHHHHHHTTS-EEEEEE
T ss_pred EEeec-CccHhHHHHHHHHHHhh-hccCCCCEEEEEccccccccc---ccccccHHHHHHHHHHHHHhhcccC-cEEEec
Confidence 44443 44455566667665555 578999999999998 65553 2334556667766666666665555 777765
Q ss_pred C
Q psy8529 397 S 397 (436)
Q Consensus 397 e 397 (436)
-
T Consensus 109 ~ 109 (179)
T PF13472_consen 109 P 109 (179)
T ss_dssp -
T ss_pred C
Confidence 4
No 22
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=77.02 E-value=9.5 Score=34.52 Aligned_cols=60 Identities=17% Similarity=0.105 Sum_probs=38.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHh--cCCCEEEE
Q psy8529 324 YTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARE--RRVPIVML 395 (436)
Q Consensus 324 g~~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~--~~~~iv~v 395 (436)
|.+-.+++..+++ +..++||+|++..|. |... ..+.+.|.+-.+.+.+.+++ -+.+++++
T Consensus 50 G~t~~~~~~~l~~-----~~~~~pd~Vii~~G~ND~~~-------~~~~~~~~~~l~~li~~i~~~~~~~~iiv~ 112 (191)
T cd01836 50 GATSADLLRQLAP-----LPETRFDVAVISIGVNDVTH-------LTSIARWRKQLAELVDALRAKFPGARVVVT 112 (191)
T ss_pred CcCHHHHHHHHHh-----cccCCCCEEEEEecccCcCC-------CCCHHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 4445666665554 456899999999998 5543 24566776666666666655 35566554
No 23
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=76.92 E-value=11 Score=33.74 Aligned_cols=54 Identities=15% Similarity=0.275 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhc--CCCEEEEe
Q psy8529 337 GLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARER--RVPIVMLT 396 (436)
Q Consensus 337 ~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~--~~~iv~vl 396 (436)
.+.+.+.+.+||+|+++.|. |.- ....+.+.|.+-.+.+.+.+++. +.+|+++.
T Consensus 47 ~~~~~l~~~~pd~Vii~~G~ND~~------~~~~~~~~~~~~~~~li~~i~~~~~~~~iv~~~ 103 (189)
T cd01825 47 FLQAQLAALPPDLVILSYGTNEAF------NKQLNASEYRQQLREFIKRLRQILPNASILLVG 103 (189)
T ss_pred HHHHHHhhCCCCEEEEECCCcccc------cCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEc
Confidence 34446778899999999997 532 22356777777777777766663 45666553
No 24
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=75.68 E-value=12 Score=32.69 Aligned_cols=42 Identities=24% Similarity=0.350 Sum_probs=29.0
Q ss_pred HHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhc
Q psy8529 340 RSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARER 388 (436)
Q Consensus 340 ~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~ 388 (436)
..+.+++||+|+++.|. |...+ .+.+.|.+..+.+.+.+++.
T Consensus 34 ~~~~~~~pd~vvi~~G~ND~~~~-------~~~~~~~~~~~~~i~~i~~~ 76 (157)
T cd01833 34 DWVLAAKPDVVLLHLGTNDLVLN-------RDPDTAPDRLRALIDQMRAA 76 (157)
T ss_pred hccccCCCCEEEEeccCcccccC-------CCHHHHHHHHHHHHHHHHHh
Confidence 34567899999999998 44332 46677776666666666654
No 25
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=73.92 E-value=17 Score=32.30 Aligned_cols=49 Identities=22% Similarity=0.441 Sum_probs=32.0
Q ss_pred HHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhc--CCCEEEE
Q psy8529 340 RSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARER--RVPIVML 395 (436)
Q Consensus 340 ~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~--~~~iv~v 395 (436)
+.+.+++|++|+++.|. |... +.+.+.|.+-.+.+.+.+++. +.+++++
T Consensus 44 ~~~~~~~p~~vvi~~G~ND~~~-------~~~~~~~~~~~~~lv~~i~~~~~~~~iil~ 95 (171)
T cd04502 44 RLVLPYQPRRVVLYAGDNDLAS-------GRTPEEVLRDFRELVNRIRAKLPDTPIAII 95 (171)
T ss_pred hhhccCCCCEEEEEEecCcccC-------CCCHHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 34556899999999998 7543 235676776666666666554 3455544
No 26
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=73.90 E-value=16 Score=33.77 Aligned_cols=63 Identities=11% Similarity=0.200 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCC-CCCcccCHHHHHHHHHHHHHHHHhcCCCEEE
Q psy8529 329 HYLEKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDP-LGLLAISPQGIIRRDELVFMKARERRVPIVM 394 (436)
Q Consensus 329 ~yl~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dp-lg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~ 394 (436)
+.+..|++. ++..-+|++|++..|. |...... -+.-.++.+.|.+-.+.+.+.+++.+.++++
T Consensus 60 ~~l~r~~~~---v~~~~~p~~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~vil 124 (204)
T cd01830 60 SALARFDRD---VLSQPGVRTVIILEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAHARGIKVIG 124 (204)
T ss_pred HHHHHHHHH---HhcCCCCCEEEEecccccccccccccccCCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 444455432 2334469999999999 5543321 1122457788887777777888887877665
No 27
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=73.78 E-value=15 Score=33.58 Aligned_cols=48 Identities=15% Similarity=0.112 Sum_probs=34.1
Q ss_pred CCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 346 CPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 346 ~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
+||+|+++.|. |+....+ ....+.+.|.+-.+.+.+.+++.+.+++++
T Consensus 65 ~pdlVii~~G~ND~~~~~~--~~~~~~~~~~~nl~~ii~~~~~~~~~~il~ 113 (198)
T cd01821 65 PGDYVLIQFGHNDQKPKDP--EYTEPYTTYKEYLRRYIAEARAKGATPILV 113 (198)
T ss_pred CCCEEEEECCCCCCCCCCC--CCCCcHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 79999999998 6544321 124567788877777777777777776654
No 28
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=73.29 E-value=13 Score=33.39 Aligned_cols=62 Identities=10% Similarity=0.150 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHh---CCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHh--cCCCEEEE
Q psy8529 328 QHYLEKIEAGLERSLRSF---CPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARE--RRVPIVML 395 (436)
Q Consensus 328 ~~yl~~~~~~l~~~~~~f---~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~--~~~~iv~v 395 (436)
...+..+++ .+..+ +||+|++..|. |...... .-..+.+.|....+.+.+.+++ -+.+++++
T Consensus 46 ~~~~~~~~~----~~~~~~~~~pd~vii~~G~ND~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~ 113 (199)
T cd01838 46 RWALKVLPK----IFLEEKLAQPDLVTIFFGANDAALPGQ--PQHVPLDEYKENLRKIVSHLKSLSPKTKVILI 113 (199)
T ss_pred HHHHHHHHH----hcCccccCCceEEEEEecCccccCCCC--CCcccHHHHHHHHHHHHHHHHhhCCCCeEEEe
Confidence 344444444 33345 89999999998 5543211 0236678888777777777766 45666665
No 29
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=73.05 E-value=20 Score=31.87 Aligned_cols=66 Identities=24% Similarity=0.328 Sum_probs=38.8
Q ss_pred EeeeCCCCCCchHHHHHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhc--CCCEE
Q psy8529 317 CRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARER--RVPIV 393 (436)
Q Consensus 317 ~NvpL~~g~~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~--~~~iv 393 (436)
+|..++- .+-.+++..+ .+.+...+||+|++..|. |...+ .+.+.|.+-.+.+.+.+++. +.+++
T Consensus 27 ~n~g~~G-~t~~~~~~~~----~~~~~~~~pd~v~i~~G~ND~~~~-------~~~~~~~~~~~~l~~~~~~~~p~~~vi 94 (174)
T cd01841 27 NNLGIAG-ISSRQYLEHI----EPQLIQKNPSKVFLFLGTNDIGKE-------VSSNQFIKWYRDIIEQIREEFPNTKIY 94 (174)
T ss_pred Eeccccc-ccHHHHHHHH----HHHHHhcCCCEEEEEeccccCCCC-------CCHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 4555443 3334454444 234556899999999998 65433 26666666655565555542 34444
Q ss_pred E
Q psy8529 394 M 394 (436)
Q Consensus 394 ~ 394 (436)
+
T Consensus 95 ~ 95 (174)
T cd01841 95 L 95 (174)
T ss_pred E
Confidence 4
No 30
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=71.87 E-value=92 Score=34.04 Aligned_cols=158 Identities=16% Similarity=0.181 Sum_probs=93.2
Q ss_pred CCCccccc--cHHHHHHHHHhcCCCeEEEEEecccccCccceeccccCCCEEEEEecCCCCCC----CCeeE--eeeCCC
Q psy8529 252 GGGFCAYA--DISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSKAK----EAIRC--RIELAP 323 (436)
Q Consensus 252 ~~GFC~fN--nvAIAa~~l~~~~g~~rV~IvD~D~HhGnGtq~if~~d~~V~~~SiH~~~~~~----~g~~~--NvpL~~ 323 (436)
..++|-++ +=+=+|...++. |+ -| -||+|.|-=|++..+|...|--.-+|--|.++.. --|-+ -.-+|+
T Consensus 313 ~~~~~~~~~~dd~e~a~~I~~d-~I-dI-LvDl~g~T~d~r~~v~A~RpAPiqvswlGy~aT~g~p~~DY~I~D~y~vPp 389 (620)
T COG3914 313 VEKWYPIGRMDDAEIANAIRTD-GI-DI-LVDLDGHTVDTRCQVFAHRPAPIQVSWLGYPATTGSPNMDYFISDPYTVPP 389 (620)
T ss_pred hhheeccCCcCHHHHHHHHHhc-CC-eE-EEeccCceeccchhhhhcCCCceEEeecccccccCCCcceEEeeCceecCc
Confidence 45788888 444445556655 44 34 4899999999999999999999999876443322 11111 111233
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCC--------------------CEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHH
Q psy8529 324 YTEDQHYLEKIEAGLERSLRSFCP--------------------DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFM 383 (436)
Q Consensus 324 g~~d~~yl~~~~~~l~~~~~~f~P--------------------dlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~ 383 (436)
. .++| +.+.|.++-..|+| |.+|+.|| -+.+..|++-+..-.++|.
T Consensus 390 ~--ae~y---ysEkl~RLp~cy~p~d~~~~v~p~~sR~~lglp~~avVf~c~--------~n~~K~~pev~~~wmqIL~- 455 (620)
T COG3914 390 T--AEEY---YSEKLWRLPQCYQPVDGFEPVTPPPSRAQLGLPEDAVVFCCF--------NNYFKITPEVFALWMQILS- 455 (620)
T ss_pred h--HHHH---HHHHHHhcccccCCCCCcccCCCCcchhhcCCCCCeEEEEec--------CCcccCCHHHHHHHHHHHH-
Confidence 2 2333 23333322223332 67777777 5677889999986655553
Q ss_pred HHHhcCCCEEEEeCCCCCcchHHHHHHHHHHHHcc---C------CCCCCccccccccC
Q psy8529 384 KARERRVPIVMLTSGGYLKQTARIIADSILNLADL---G------LISRPYNIWFIYYT 433 (436)
Q Consensus 384 ~a~~~~~~iv~vleGGY~~~~~~~~~~~v~~l~~~---~------l~~~~~~~~~~~~~ 433 (436)
+-..-+++++.||=+.+ +..-+..+... + +++.|-..++++|+
T Consensus 456 ---~vP~Svl~L~~~~~~~~----~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~ 507 (620)
T COG3914 456 ---AVPNSVLLLKAGGDDAE----INARLRDLAEREGVDSERLRFLPPAPNEDHRARYG 507 (620)
T ss_pred ---hCCCcEEEEecCCCcHH----HHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhc
Confidence 33556899999994443 33444444422 1 12445556666664
No 31
>KOG0121|consensus
Probab=68.71 E-value=3.7 Score=35.93 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=33.9
Q ss_pred CcCCCCCcccc-----ccHHHHHHHHHhcCCCeEEEEEecccccCcccee
Q psy8529 248 SETKGGGFCAY-----ADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEK 292 (436)
Q Consensus 248 ~~~~~~GFC~f-----NnvAIAa~~l~~~~g~~rV~IvD~D~HhGnGtq~ 292 (436)
.+-.++|||++ .++-.|.+|+-.-.=-.|++-+|||.-.=+|-|.
T Consensus 73 ~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF~eGRQy 122 (153)
T KOG0121|consen 73 FKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGFVEGRQY 122 (153)
T ss_pred CCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccchhhhhh
Confidence 34567999987 4666777888654223899999999988888874
No 32
>PF09754 PAC2: PAC2 family; InterPro: IPR019151 This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome, which is about 2000 kilodaltons (kDa) in molecular mass and contains one 20S core particle structure and two 19S regulatory caps. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits [, , , ].; PDB: 3MNF_A 2P90_B 3E35_A 3GAA_D 2WAM_C.
Probab=66.22 E-value=22 Score=33.25 Aligned_cols=134 Identities=19% Similarity=0.263 Sum_probs=68.4
Q ss_pred HHHHHHHHhcCCCeEEEEEecccccC-cc--ceeccccCCCEEE--EEecCCCCCCCCee---EeeeCCCCCCchHHHHH
Q psy8529 262 SLLVKLLFQSKSISTAMIVDLDAHQG-NG--YEKDFMNETRIFI--METCITSKAKEAIR---CRIELAPYTEDQHYLEK 333 (436)
Q Consensus 262 AIAa~~l~~~~g~~rV~IvD~D~HhG-nG--tq~if~~d~~V~~--~SiH~~~~~~~g~~---~NvpL~~g~~d~~yl~~ 333 (436)
-+|+.++.++.+.++|..||-|.+.- .| -.-.+.++..... +.++..... +.. .+.|.|++. ...
T Consensus 13 ~la~d~Li~~l~~~~vg~i~~~~~~P~~~~~p~~~~~~g~~~~~~~~~iy~~~~~--~i~vl~~~~p~~~~~-----~~~ 85 (219)
T PF09754_consen 13 QLAVDHLIESLNLEKVGYIDSDPLFPYVGPRPYVVVDDGSNILSPPLEIYYSEDS--KILVLQGRSPIPPGR-----WYE 85 (219)
T ss_dssp HHHHHHHHHHSCEEEEEEE-HHHHSBTTTS--EEEEETTEEEEB-SEEEEEEECT--TEEEEEESSE--SCG-----HHH
T ss_pred HHHHHHHHHhCCCEEEEEEeccccCCCccCCCeEEeccccceeccceEEEEECCC--CEEEEEecCCCCchH-----HHH
Confidence 46889999999999999999965542 22 2222222201111 111111111 121 244666432 233
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCcCCCC--CCCCcc-cCHHHHH-----------------HHHHHHHHHHHhcCCCEE
Q psy8529 334 IEAGLERSLRSFCPDIIVYNAGTDVLLND--PLGLLA-ISPQGII-----------------RRDELVFMKARERRVPIV 393 (436)
Q Consensus 334 ~~~~l~~~~~~f~PdlivvsaG~D~~~~D--plg~~~-lt~~~~~-----------------~~~~~l~~~a~~~~~~iv 393 (436)
|-+-|...+++++..-||+-.|.++.... | ..+. .|++.+. ...-.+...+.+.++|.+
T Consensus 86 f~~~l~~~~~~~g~~~vi~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~i~~~ 164 (219)
T PF09754_consen 86 FAEELLDWIKSFGVKEVIVLGGLPAMEPHERP-PVYRVATSEELLDKLEEAGIELSEEGIIVGPSGLLLNEAEERGIPAI 164 (219)
T ss_dssp HHHHHHHHHHHTTECEEEEEEEEEESS-TTS--EEEEEESSGGGHCHSHHTT-EE-SEEEE-HHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCcCCCCcccc-ceEEEEcCHHHhhhhcccccccccCCCccCchHHHHHHHHhCCCCce
Confidence 44446668899999999999999988855 3 2111 1111111 233445566777888876
Q ss_pred EEe--CCCCCcc
Q psy8529 394 MLT--SGGYLKQ 403 (436)
Q Consensus 394 ~vl--eGGY~~~ 403 (436)
.++ -=+|.++
T Consensus 165 ~l~~~~~~~~~d 176 (219)
T PF09754_consen 165 CLLAETPGYLPD 176 (219)
T ss_dssp EEEEEEEGGGT-
T ss_pred EEEeecCCccCC
Confidence 554 2345544
No 33
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=63.89 E-value=16 Score=33.94 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=29.4
Q ss_pred HHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhc--CCCEEEE
Q psy8529 342 LRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARER--RVPIVML 395 (436)
Q Consensus 342 ~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~--~~~iv~v 395 (436)
+..++||+|+|..|. |...+ .+.+.|.+-.+.+.+.+++. +.+|+++
T Consensus 85 l~~~~pd~VvI~~G~ND~~~~-------~~~~~~~~~l~~ii~~l~~~~P~~~Iil~ 134 (214)
T cd01820 85 LDGVNPKVVVLLIGTNNIGHT-------TTAEEIAEGILAIVEEIREKLPNAKILLL 134 (214)
T ss_pred ccCCCCCEEEEEecccccCCC-------CCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 446789999999998 44221 26777766655555555553 3444443
No 34
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=63.65 E-value=26 Score=33.04 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 334 ~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
+.+.+....++++|++|||-. ........ .-.-..+...++.+.|.++|++++++++++-
T Consensus 111 l~~~i~~~~~~~~~~~vvID~-l~~l~~~~--~~~~~~~~~~~~~~~L~~la~~~~~~ii~~~ 170 (242)
T cd00984 111 IRSRARRLKKEHGLGLIVIDY-LQLMSGSK--KKGNRQQEVAEISRSLKLLAKELNVPVIALS 170 (242)
T ss_pred HHHHHHHHHHhcCCCEEEEcC-chhcCCCC--CCCCHHHHHHHHHHHHHHHHHHhCCeEEEec
Confidence 444455566778999999832 22221110 0001123455677778889999999988876
No 35
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=62.77 E-value=35 Score=31.74 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecC
Q psy8529 332 EKIEAGLERSLRSFCPDIIVYNAG 355 (436)
Q Consensus 332 ~~~~~~l~~~~~~f~PdlivvsaG 355 (436)
..+++.+..+.++|++|+||+-++
T Consensus 134 ~~l~~~l~~l~~~y~~D~IiiD~p 157 (207)
T TIGR03018 134 QRMRSLLHELARRYPDRIIIIDTP 157 (207)
T ss_pred HHHHHHHHHHHhhCCCCEEEEECC
Confidence 346777777667787799999765
No 36
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=62.01 E-value=1.5e+02 Score=28.45 Aligned_cols=147 Identities=8% Similarity=0.059 Sum_probs=82.1
Q ss_pred cccHH-HHHHHHHhcCCCeEEEEEeccccc-----Ccccee---ccccCCCEEEEEecCCCCCCCCeeEeeeCCCCCCch
Q psy8529 258 YADIS-LLVKLLFQSKSISTAMIVDLDAHQ-----GNGYEK---DFMNETRIFIMETCITSKAKEAIRCRIELAPYTEDQ 328 (436)
Q Consensus 258 fNnvA-IAa~~l~~~~g~~rV~IvD~D~Hh-----GnGtq~---if~~d~~V~~~SiH~~~~~~~g~~~NvpL~~g~~d~ 328 (436)
+|+|. ||+.|+.++.+.++|..||-|.=. =||+.. -||..+++++ -..-.+|+++
T Consensus 26 ~G~VG~iA~~~Li~~l~~~~ig~I~s~~~pP~v~v~~g~~~~p~riY~~~~~~v-----------v~~~~~~i~p----- 89 (238)
T TIGR00161 26 VGLVGNIAGWLLIEDLKLREIGYIDSKYFPPLAVLYKGVAIPPVRIYEGKDGIV-----------LFLSDFIIPP----- 89 (238)
T ss_pred CChHHHHHHHHHHHHcCCeEEEEEecCCCCCeEEecCCeecCceEEEecCCcEE-----------EEEecccCCH-----
Confidence 77787 889999999999999999987321 022210 0111111100 0011344544
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCccc-C-HHHHH---------------HHHHHHHHHHHhcCCC
Q psy8529 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAI-S-PQGII---------------RRDELVFMKARERRVP 391 (436)
Q Consensus 329 ~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~l-t-~~~~~---------------~~~~~l~~~a~~~~~~ 391 (436)
.-...|-+.+...+++.+..-|+.-.|..+.. +|..-+.. | .+.-. -+.-.+...|...|+|
T Consensus 90 ~~~~~~a~~il~~~~~~gv~~Ii~Lgg~~~~~-~~~~v~~~at~~~~~~~l~~~~~~~~~g~i~G~~g~ll~~a~~~gi~ 168 (238)
T TIGR00161 90 AVVYDMTNAIVEWMVRNNSRELISFNGMVVRE-KSQPVFGAANSQELIERLKDLIEIFPFGNLNGISGTLLTRCAVNDIP 168 (238)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEeCccCCC-CCCcEEEEECCHHHHHHHHHhcCcCCCCEEechhHHHHHHHHHcCCC
Confidence 12334455566689999999999999998865 33221111 1 11111 1223455667778999
Q ss_pred EEEEeC--CCCCcch--HHHHHHHHHHHHccCCC
Q psy8529 392 IVMLTS--GGYLKQT--ARIIADSILNLADLGLI 421 (436)
Q Consensus 392 iv~vle--GGY~~~~--~~~~~~~v~~l~~~~l~ 421 (436)
.++++. =||.++. +..+-+.+..++|.++.
T Consensus 169 ~i~Ll~et~~~~PDP~AA~~ll~~l~~l~~~~id 202 (238)
T TIGR00161 169 AICLLAETLGPYPDPRAAASLVEVLNKMLNTNVD 202 (238)
T ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCcC
Confidence 777662 3555553 55555566666665543
No 37
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=61.61 E-value=40 Score=30.51 Aligned_cols=58 Identities=24% Similarity=0.294 Sum_probs=33.7
Q ss_pred HHHHHHhCCCEEEEecCC-CcCCC-CCCCCccc-C---HHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 339 ERSLRSFCPDIIVYNAGT-DVLLN-DPLGLLAI-S---PQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 339 ~~~~~~f~PdlivvsaG~-D~~~~-Dplg~~~l-t---~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
...+.+.+||+|+++.|. |.... ++-+.... + .+.|.+..+.+.+.+++.+.+++++.
T Consensus 52 ~~~l~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~~~~vili~ 115 (200)
T cd01829 52 KELIAEEKPDVVVVFLGANDRQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARAKGVPVIWVG 115 (200)
T ss_pred HHHHhcCCCCEEEEEecCCCCccccCCCceeecCChhHHHHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 344567899999999998 55321 11111111 1 25666555556666666677776653
No 38
>KOG0835|consensus
Probab=57.75 E-value=9.2 Score=38.50 Aligned_cols=72 Identities=22% Similarity=0.315 Sum_probs=42.3
Q ss_pred ecCCCcCCCCCCC-------CcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcchHHHHHHHHHHHHcc----CCC
Q psy8529 353 NAGTDVLLNDPLG-------LLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADL----GLI 421 (436)
Q Consensus 353 saG~D~~~~Dplg-------~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~~~~~~~~~v~~l~~~----~l~ 421 (436)
..|||.|..+|.+ .++++++- ++.+..-.+...---+-|.|+ |.+++ +|-.+..|++. ||+
T Consensus 131 ~LGF~~Hv~hPhklii~YLqtL~~~~~~--~l~Q~~wNfmNDslRT~v~vr---y~pe~---iACaciyLaAR~~eIpLp 202 (367)
T KOG0835|consen 131 ELGFDVHVEHPHKLIIMYLQTLQLPPNL--KLLQAAWNFMNDSLRTDVFVR---YSPES---IACACIYLAARNLEIPLP 202 (367)
T ss_pred HhCCeeeeeccHHHHHHHHHHhcCCCch--hHHHHHHHhhhhccccceeee---cCHHH---HHHHHHHHHHhhhcCCCC
Confidence 4799999999976 44555544 233333222222122566776 77765 44444455544 555
Q ss_pred CCCccccccccCC
Q psy8529 422 SRPYNIWFIYYTS 434 (436)
Q Consensus 422 ~~~~~~~~~~~~~ 434 (436)
..| .||.||+-
T Consensus 203 ~~P--~Wf~~Fd~ 213 (367)
T KOG0835|consen 203 FQP--HWFKAFDT 213 (367)
T ss_pred CCc--cHHHHcCC
Confidence 666 89999864
No 39
>KOG0121|consensus
Probab=56.14 E-value=9.1 Score=33.53 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=27.1
Q ss_pred CCCCCcccccc----ccHH-HHHHHHHhhCCCceEEEEeccCC
Q psy8529 29 SETKGGGFCAY----ADIS-LLVKLLFQSKSISTAMIVDLDAH 66 (436)
Q Consensus 29 ~~~~~~GfC~~----N~~a-~a~~~~~~~~~~~rv~iiD~D~h 66 (436)
..-.++|||++ ++-| .|++++-.-.--+|++-+|||.=
T Consensus 73 ~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~G 115 (153)
T KOG0121|consen 73 FKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAG 115 (153)
T ss_pred CCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecccc
Confidence 45678999986 4444 47777754444578999999975
No 40
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=55.27 E-value=45 Score=34.97 Aligned_cols=59 Identities=22% Similarity=0.356 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecC-CCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcch
Q psy8529 332 EKIEAGLERSLRSFCPDIIVYNAG-TDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT 404 (436)
Q Consensus 332 ~~~~~~l~~~~~~f~PdlivvsaG-~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~~ 404 (436)
..+++.|..+.++++|++|+|... .....+|. +..+ +.++ ++.+.|++.|--.||..+.
T Consensus 72 ~kL~~~I~~~~~~~~p~~I~V~ttC~~~~IGdD----------i~~v---~~~~-~~~~~~vi~v~t~gf~g~~ 131 (427)
T cd01971 72 DRLRELIKSTLSIIDADLFVVLTGCIAEIIGDD----------VGAV---VSEF-QEGGAPIVYLETGGFKGNN 131 (427)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCcHHHhhcC----------HHHH---HHHh-hhcCCCEEEEECCCcCccc
Confidence 346666777888899997766554 35555554 2221 1222 4468899999999999754
No 41
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=54.98 E-value=25 Score=36.08 Aligned_cols=66 Identities=14% Similarity=0.215 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcchHHHHHH
Q psy8529 332 EKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIAD 410 (436)
Q Consensus 332 ~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~~~~~~~~ 410 (436)
+.+++.|..+.++++|++|+|.... ....+|. +..+. .++.++.+.|++.+--.||..+.......
T Consensus 60 ~kL~~~i~~~~~~~~P~~i~v~~sC~~~iIGdD----------~~~v~---~~~~~~~~~~vi~v~~~gf~~~~~~G~~~ 126 (398)
T PF00148_consen 60 EKLREAIKEIAEKYKPKAIFVVTSCVPEIIGDD----------IEAVA---RELQEEYGIPVIPVHTPGFSGSYSQGYDA 126 (398)
T ss_dssp HHHHHHHHHHHHHHSTSEEEEEE-HHHHHTTTT----------HHHHH---HHHHHHHSSEEEEEE--TTSSSHHHHHHH
T ss_pred hhHHHHHHHHHhcCCCcEEEEECCCCHHHhCCC----------HHHHH---HHhhcccCCcEEEEECCCccCCccchHHH
Confidence 3466667778889999988876553 4444442 22222 23344568899999999996554333333
No 42
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=52.63 E-value=77 Score=32.39 Aligned_cols=73 Identities=14% Similarity=0.289 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeC-CCCCcchHHHHHH
Q psy8529 333 KIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS-GGYLKQTARIIAD 410 (436)
Q Consensus 333 ~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vle-GGY~~~~~~~~~~ 410 (436)
.|++.|..+.+.|+|++|+|..+. -...||.+. .+.+ + + +.+.|++.|=- ||+ -+.......
T Consensus 62 KL~eaI~ea~e~y~P~lI~VvTTCvseIIGDDIe----------aVvk---E-~-~~giPVI~V~t~GGf-Gdn~~G~~~ 125 (352)
T TIGR03282 62 KLVKVIRYAEEKFKPELIGVVGTCASMIIGEDLK----------EAVD---E-A-DVDAEVIAVEVHAGF-GDNTEGVIA 125 (352)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCchhhccCCHH----------HHHH---H-h-CCCCCEEEEECCCCC-ccHHHHHHH
Confidence 466677778889999988876664 445555322 2111 1 1 35789999965 888 555556666
Q ss_pred HHHHHHccCCC
Q psy8529 411 SILNLADLGLI 421 (436)
Q Consensus 411 ~v~~l~~~~l~ 421 (436)
.+.+++.+.+.
T Consensus 126 aLeAiidq~~i 136 (352)
T TIGR03282 126 TLESAAEAGII 136 (352)
T ss_pred HHHHHHHhCCc
Confidence 67777777665
No 43
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=52.39 E-value=40 Score=35.18 Aligned_cols=54 Identities=26% Similarity=0.288 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCccc------CHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAI------SPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 334 ~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~l------t~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
++..+..+..++++++||| |+++.+.. ......++.+.|..+|+++++|++++-
T Consensus 293 i~~~i~~~~~~~~~~~vvI---------D~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~~i~vi~ls 352 (434)
T TIGR00665 293 LRAKARRLKREHGLGLIVI---------DYLQLMSGSGRSENRQQEVSEISRSLKALAKELNVPVIALS 352 (434)
T ss_pred HHHHHHHHHHhcCCCEEEE---------cchHhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 3334445566788999997 44443321 123467778889999999999998875
No 44
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=52.29 E-value=70 Score=33.94 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhc----CCCEEEEeCCCCCcch
Q psy8529 332 EKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARER----RVPIVMLTSGGYLKQT 404 (436)
Q Consensus 332 ~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~----~~~iv~vleGGY~~~~ 404 (436)
..+++.|..+.++|+|++|+|.++. ....||.+ ++.. +. +-++. +.|++.+--.||.-..
T Consensus 78 ~~L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDDi-------~~v~---~~---~~~~~p~~~~~pvi~v~tpgF~g~~ 142 (455)
T PRK14476 78 ENVEEAILNICKKAKPKIIGLCTTGLTETRGDDV-------AGAL---KE---IRARHPELADTPIVYVSTPDFKGAL 142 (455)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCcchHhhhhccH-------HHHH---HH---HHhhccccCCCeEEEecCCCCCCcH
Confidence 3455666677788999988765554 66666642 1221 11 11222 6799999999997543
No 45
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=51.77 E-value=74 Score=32.81 Aligned_cols=58 Identities=17% Similarity=0.324 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy8529 332 EKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402 (436)
Q Consensus 332 ~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~ 402 (436)
..+++.|..+.++++|++|+|.... ....+|. +..+ +.++.++.+.|++.+--.||..
T Consensus 73 ~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdD----------i~~v---~~~~~~~~~~~vi~v~t~gf~g 131 (406)
T cd01967 73 KKLKKAIKEAYERFPPKAIFVYSTCPTGLIGDD----------IEAV---AKEASKELGIPVIPVNCEGFRG 131 (406)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCchhhhccC----------HHHH---HHHHHHhhCCCEEEEeCCCeeC
Confidence 3566777778889999977765553 5555554 2222 2223334588999999888876
No 46
>PRK08760 replicative DNA helicase; Provisional
Probab=51.53 E-value=38 Score=36.20 Aligned_cols=49 Identities=27% Similarity=0.290 Sum_probs=34.9
Q ss_pred HHHHHHHhCCCEEEEecCCCcCCCCCCCCccc------CHHHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAI------SPQGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 338 l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~l------t~~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
+..+..++++++||| |.++-+.. ....+.++++.|..+|+++++||+++
T Consensus 331 ~r~l~~~~~~~lVvI---------DyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~l 385 (476)
T PRK08760 331 CRRLKREHDLGLIVI---------DYLQLMSVPGNSENRATEISEISRSLKGLAKELNVPVIAL 385 (476)
T ss_pred HHHHHHhcCCCEEEE---------ecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhCCEEEEe
Confidence 334445688999987 44443321 23457889999999999999998887
No 47
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=51.46 E-value=34 Score=32.80 Aligned_cols=47 Identities=21% Similarity=0.245 Sum_probs=34.8
Q ss_pred CCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcc
Q psy8529 346 CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403 (436)
Q Consensus 346 ~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~ 403 (436)
.+|+||+.- |.-. .|+++-++++..+++++++++.+-++.| |||...
T Consensus 83 ~~Dliil~G--d~Q~--------~~~~gqyel~~~~Ld~a~e~g~~~IyTL-GGy~vG 129 (258)
T COG2047 83 ERDLIILVG--DTQA--------TSSEGQYELTGKILDIAKEFGARMIYTL-GGYGVG 129 (258)
T ss_pred CCcEEEEec--cccc--------cCcchhHHHHHHHHHHHHHcCCcEEEEe-cCcccC
Confidence 458888732 2222 4566667888889999999999999999 888753
No 48
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=51.32 E-value=33 Score=30.46 Aligned_cols=51 Identities=12% Similarity=0.111 Sum_probs=32.2
Q ss_pred HHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHh--cCCCEEEE
Q psy8529 342 LRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARE--RRVPIVML 395 (436)
Q Consensus 342 ~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~--~~~~iv~v 395 (436)
+...+||+|+++.|. |...+.+ -..+++.|.+-.+.+.+.+++ -+.+++++
T Consensus 57 ~~~~~~d~v~l~~G~ND~~~~~~---~~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~ 110 (191)
T cd01834 57 VLPAKPDVVSIMFGINDSFRGFD---DPVGLEKFKTNLRRLIDRLKNKESAPRIVLV 110 (191)
T ss_pred cccCCCCEEEEEeecchHhhccc---ccccHHHHHHHHHHHHHHHHcccCCCcEEEE
Confidence 445789999999998 5554322 135677777666666666542 34555554
No 49
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=51.19 E-value=79 Score=33.06 Aligned_cols=58 Identities=19% Similarity=0.320 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy8529 332 EKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402 (436)
Q Consensus 332 ~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~ 402 (436)
..+++.|..+.++++|++|+|.+.. ....+|. +..+ +.++.++.+.|++.+--.||..
T Consensus 75 ~kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGdD----------i~~v---~~~~~~~~~~pvi~v~t~gf~g 133 (426)
T cd01972 75 KKLEDTIKEAYSRYKPKAIFVATSCATGIIGDD----------VESV---VEELEDEIGIPVVALHCEGFKG 133 (426)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCChHHHhccC----------HHHH---HHHHHHhhCCCEEEEeCCccCC
Confidence 4566777778889999988776654 4445553 2222 2223344689999999999987
No 50
>PRK05595 replicative DNA helicase; Provisional
Probab=50.67 E-value=35 Score=35.92 Aligned_cols=46 Identities=22% Similarity=0.241 Sum_probs=33.4
Q ss_pred HHHHhCCCEEEEecCCCcCCCCCCCCcc------cCHHHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLA------ISPQGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 341 ~~~~f~PdlivvsaG~D~~~~Dplg~~~------lt~~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
...++++++||| |.++-+. -....+.++++.|..+|+++++|++++
T Consensus 306 ~~~~~~~~~vvI---------Dylql~~~~~~~~~r~~~v~~is~~LK~lAke~~i~vi~l 357 (444)
T PRK05595 306 LKIEHGIDMILI---------DYLQLMSGGKGSESRQQEVSEISRSIKALAKEMECPVIAL 357 (444)
T ss_pred HHHhcCCCEEEE---------eHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhCCeEEEe
Confidence 345678999987 3333332 123467888899999999999998877
No 51
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=49.75 E-value=32 Score=33.16 Aligned_cols=52 Identities=13% Similarity=0.080 Sum_probs=34.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccC-------HHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAIS-------PQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 336 ~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt-------~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
+.+...+.+++|++||| |+++.+.-. ...+.++.+.|..+|++++++++++-
T Consensus 130 ~~i~~~~~~~~~~~vvI---------D~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~s 188 (271)
T cd01122 130 EKVRYMAVSHGIQHIII---------DNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVS 188 (271)
T ss_pred HHHHHHHhcCCceEEEE---------CCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 34445566789999997 454433211 12345666778888999999988775
No 52
>PRK05973 replicative DNA helicase; Provisional
Probab=49.74 E-value=39 Score=32.65 Aligned_cols=51 Identities=24% Similarity=0.188 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCCEEEEecCCCcCCCCCCCCcc--cCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLA--ISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 337 ~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~--lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
++..+..+++|++||| |.++.+. .....+....+.+.++|++++++++++-
T Consensus 138 ii~~l~~~~~~~lVVI---------DsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~s 190 (237)
T PRK05973 138 IIARLASAPRGTLVVI---------DYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFIS 190 (237)
T ss_pred HHHHHHHhhCCCEEEE---------EcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEe
Confidence 3444555788999997 4454332 2233466666778889999999988873
No 53
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=49.69 E-value=61 Score=34.11 Aligned_cols=71 Identities=10% Similarity=0.100 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHh----cCCCEEEEeCCCCCcchHH
Q psy8529 332 EKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARE----RRVPIVMLTSGGYLKQTAR 406 (436)
Q Consensus 332 ~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~----~~~~iv~vleGGY~~~~~~ 406 (436)
..|++.|..+.++|+|++|+|.+.. ....||.+.. . .+. +-++ .+.|++.+-..||.-....
T Consensus 77 ~~L~~~I~~~~~~~~P~~I~V~ttC~~eiIGDDi~~-------v---~~~---~~~e~p~~~~~pvi~v~tpgf~g~~~~ 143 (432)
T TIGR01285 77 EHIEEAIDTLCQRNKPKAIGLLSTGLTETRGEDIAR-------V---VRQ---FREKHPQHKGTAVVTVNTPDFKGSLED 143 (432)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccccccCHHH-------H---HHH---HHhhcccccCCeEEEecCCCcCCchHH
Confidence 3466667678889999987776554 5566664332 2 111 1122 3789999999999864433
Q ss_pred HHHHHHHHH
Q psy8529 407 IIADSILNL 415 (436)
Q Consensus 407 ~~~~~v~~l 415 (436)
.....+.++
T Consensus 144 G~~~a~~al 152 (432)
T TIGR01285 144 GYAAAVESI 152 (432)
T ss_pred HHHHHHHHH
Confidence 333333333
No 54
>PRK09165 replicative DNA helicase; Provisional
Probab=49.31 E-value=44 Score=35.89 Aligned_cols=48 Identities=27% Similarity=0.290 Sum_probs=34.1
Q ss_pred HHHHHhCCCEEEEecCCCcCCCCCCCCccc--------CHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 340 RSLRSFCPDIIVYNAGTDVLLNDPLGLLAI--------SPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 340 ~~~~~f~PdlivvsaG~D~~~~Dplg~~~l--------t~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
....++++++||| |+++-+.- ..+.+.++++.|..+|+++++||+++-
T Consensus 335 ~l~~~~~~~lvvI---------DyLqli~~~~~~~~~~r~~ev~~is~~LK~lAkel~ipVi~ls 390 (497)
T PRK09165 335 RLKRQHGLDLLVV---------DYLQLIRGSSKRSSDNRVQEISEITQGLKALAKELNIPVIALS 390 (497)
T ss_pred HHHHhcCCCEEEE---------cchHhccCCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEee
Confidence 3445678998887 44443321 124578889999999999999998873
No 55
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=48.32 E-value=61 Score=34.50 Aligned_cols=58 Identities=16% Similarity=0.231 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy8529 333 KIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402 (436)
Q Consensus 333 ~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~ 402 (436)
.|.+.+..++++|+|++|+|.++. +-+-.....++..+ ++.++.++|||.+-..|+..
T Consensus 84 ~L~~~i~ei~~~~~p~~ifv~~TC------~t~iIGdDle~va~------~~~~~~gipVV~v~~~Gf~~ 141 (457)
T CHL00073 84 ELKRLCLQIKKDRNPSVIVWIGTC------TTEIIKMDLEGMAP------KLEAEIGIPIVVARANGLDY 141 (457)
T ss_pred HHHHHHHHHHHhCCCCEEEEEccC------cHHhhccCHHHHHH------HHHHhhCCCEEEEeCCCccC
Confidence 466778889999999999998774 11112222333332 23345799999999999883
No 56
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=48.08 E-value=1.2e+02 Score=27.74 Aligned_cols=61 Identities=20% Similarity=0.214 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 327 DQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 327 d~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
.++...+|++++. .+.+.+||+||+ +| |.. .....+.+.+..+.+.+.++. +.+.|+++++
T Consensus 23 ~~~~~~~~~~~~~-~~~~~~~d~i~~-~G-D~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~ 83 (223)
T cd00840 23 REDQFEAFEEIVE-LAIEEKVDFVLI-AG-DLF-----DSNNPSPEALELLIEALRRLK-EAGIPVFIIA 83 (223)
T ss_pred hHHHHHHHHHHHH-HHHhcCCCEEEE-CC-ccc-----CCCCCCHHHHHHHHHHHHHHH-HCCCCEEEec
Confidence 4678888988876 567789998776 33 332 222334555555555554432 2377877665
No 57
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=47.65 E-value=83 Score=28.78 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=27.8
Q ss_pred hCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhc
Q psy8529 345 FCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARER 388 (436)
Q Consensus 345 f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~ 388 (436)
.+||+|++..|. |... .+.++.+.|.+-.+.+.+.+++.
T Consensus 78 ~~pd~vii~lGtND~~~-----~~~~~~~~~~~~l~~lv~~i~~~ 117 (208)
T cd01839 78 SPLDLVIIMLGTNDLKS-----YFNLSAAEIAQGLGALVDIIRTA 117 (208)
T ss_pred CCCCEEEEecccccccc-----ccCCCHHHHHHHHHHHHHHHHhc
Confidence 699999999998 6543 23457777877666666666653
No 58
>PHA02546 47 endonuclease subunit; Provisional
Probab=47.57 E-value=1.1e+02 Score=31.08 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCc-ccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy8529 328 QHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLL-AISPQGIIRRDELVFMKARERRVPIVMLTSGGYL 401 (436)
Q Consensus 328 ~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~-~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~ 401 (436)
+++...|++++. .+.+.+||+||+. ||=+-.. ..+.+......+.+++..++.++|++++. |.-+
T Consensus 22 ~~~~~~l~~ii~-~a~~~~vD~Vlia-------GDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~I~-GNHD 87 (340)
T PHA02546 22 NYQLKFIKQAIE-YSKAHGITTWIQL-------GDTFDVRKAITQNTMNFVREKIFDLLKEAGITLHVLV-GNHD 87 (340)
T ss_pred HHHHHHHHHHHH-HHHHcCCCEEEEC-------CcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEEc-cCCC
Confidence 557778888765 6788899999973 2322221 23444443333334444455688888875 4444
No 59
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=47.34 E-value=22 Score=33.64 Aligned_cols=26 Identities=8% Similarity=0.100 Sum_probs=17.9
Q ss_pred HHHHHHHHhhCCCceEEEEeccCCCCC
Q psy8529 43 SLLVKLLFQSKSISTAMIVDLDAHQFS 69 (436)
Q Consensus 43 a~a~~~~~~~~~~~rv~iiD~D~h~g~ 69 (436)
|+.+.+...+.| .||++||+|..+||
T Consensus 18 a~~LA~~la~~g-~~VlliD~D~~~~~ 43 (251)
T TIGR01969 18 TANLGVALAKLG-KKVLALDADITMAN 43 (251)
T ss_pred HHHHHHHHHHCC-CeEEEEeCCCCCcc
Confidence 333334333433 69999999999998
No 60
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=47.26 E-value=53 Score=34.00 Aligned_cols=72 Identities=14% Similarity=0.142 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcchHHHHHH
Q psy8529 332 EKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIAD 410 (436)
Q Consensus 332 ~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~~~~~~~~ 410 (436)
..+++.|..+.++|+|++|+|.+.. ....+|.+. .+.+ ++.++.+.|++.+-..||..........
T Consensus 73 ~~L~~aI~ei~~~~~P~~I~V~sTCv~e~IGDDi~----------~v~~---~~~~~~~~pvi~v~t~gf~g~~~~G~~~ 139 (396)
T cd01979 73 AELDRVVTQIKRDRNPSVIFLIGSCTTEVIKMDLE----------GAAP---RLSAEIGVPILVASASGLDYTFTQGEDT 139 (396)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCHHHHHhcCHH----------HHHH---HHhhcCCCcEEEeeCCCccccHHHHHHH
Confidence 3466677778889999987775543 444555322 1111 1222357788888877886543333344
Q ss_pred HHHHHH
Q psy8529 411 SILNLA 416 (436)
Q Consensus 411 ~v~~l~ 416 (436)
.+..+.
T Consensus 140 ~~~alv 145 (396)
T cd01979 140 VLAALV 145 (396)
T ss_pred HHHHHh
Confidence 444443
No 61
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=46.39 E-value=84 Score=26.57 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=32.9
Q ss_pred HHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHh--cCCCEEEEeCCCC
Q psy8529 340 RSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARE--RRVPIVMLTSGGY 400 (436)
Q Consensus 340 ~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~--~~~~iv~vleGGY 400 (436)
..+...+||+|+++.|. |..... ..+.+.+....+.+.+.+++ .+.+++++.---+
T Consensus 59 ~~~~~~~~d~vil~~G~ND~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~vv~~~~~~~ 117 (187)
T cd00229 59 LALLKDKPDLVIIELGTNDLGRGG-----DTSIDEFKANLEELLDALRERAPGAKVILITPPPP 117 (187)
T ss_pred hhhccCCCCEEEEEeccccccccc-----ccCHHHHHHHHHHHHHHHHHHCCCCcEEEEeCCCC
Confidence 34667899999999997 443221 24455555555555554443 4556666654433
No 62
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=46.02 E-value=62 Score=34.22 Aligned_cols=58 Identities=16% Similarity=0.301 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecC-CCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcc
Q psy8529 333 KIEAGLERSLRSFCPDIIVYNAG-TDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403 (436)
Q Consensus 333 ~~~~~l~~~~~~f~PdlivvsaG-~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~ 403 (436)
.|.+.|..+.++++|++|+|.+. .....+|.+. .+.+ ++-++.+.|++.|-..||...
T Consensus 108 kL~~~I~e~~~~~~P~~I~V~ttC~~~lIGdDi~----------~v~~---e~~~~~~~~vi~v~t~gf~g~ 166 (456)
T TIGR01283 108 KLFHAIREIVERYHPPAVFVYSTCVPGLIGDDLE----------AVCK---AAAEKTGIPVIPVDSEGFYGS 166 (456)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCChHHHhcCCHH----------HHHH---HHHHHhCCCEEEEECCCCccc
Confidence 45566667788899998766554 3555555332 2222 222335899999998888654
No 63
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=45.91 E-value=1.5e+02 Score=30.85 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcc
Q psy8529 332 EKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403 (436)
Q Consensus 332 ~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~ 403 (436)
..+++.|..+.++|+|++|+|.+.. -...+|. ...+.+ ++.++.+.|++.+---||...
T Consensus 70 ~~L~~aI~~i~~~~~P~~I~V~tTC~se~IGDD----------i~~v~~---~~~~~~~~pVi~v~tpgf~g~ 129 (407)
T TIGR01279 70 EELDRVVEQIKRDRNPSVIFLLSSCTPEVIKMD----------LEGLAE---RLSTNFGVPVLFAPASGLDYT 129 (407)
T ss_pred HHHHHHHHHHHhhcCCCEEEEECCchHHHHHhh----------HHHHHH---HHHHhhCCCEEEeeCCCcccc
Confidence 4567777788889999999887653 3333332 222111 122234778888877777643
No 64
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=45.74 E-value=44 Score=34.92 Aligned_cols=59 Identities=20% Similarity=0.283 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecC-CCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcch
Q psy8529 333 KIEAGLERSLRSFCPDIIVYNAG-TDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT 404 (436)
Q Consensus 333 ~~~~~l~~~~~~f~PdlivvsaG-~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~~ 404 (436)
.+++.|..+.++++|++|+|.+. .....+|.+ ..+.+. +-++.+.|++.+--.||....
T Consensus 72 kL~~~I~~~~~~~~p~~I~v~~tC~~~iIGdDi----------~~v~~~---~~~~~~~~vi~v~t~gf~g~~ 131 (430)
T cd01981 72 KVVENITRKDKEEKPDLIVLTPTCTSSILQEDL----------QNFVRA---AGLSSKSPVLPLDVNHYRVNE 131 (430)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHhhCH----------HHHHHH---hhhccCCCeEEecCCCccchH
Confidence 45566666778899998877666 455555543 222121 222358899999999998653
No 65
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=45.16 E-value=1.2e+02 Score=31.67 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEec-CCCcCCCCC
Q psy8529 333 KIEAGLERSLRSFCPDIIVYNA-GTDVLLNDP 363 (436)
Q Consensus 333 ~~~~~l~~~~~~f~Pdlivvsa-G~D~~~~Dp 363 (436)
.+++.|..+.++++|++|+|.. ......+|.
T Consensus 68 ~L~~~i~~~~~~~~p~~I~v~~tC~~~liGdD 99 (428)
T cd01965 68 NLIEALKNLLSRYKPDVIGVLTTCLTETIGDD 99 (428)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcchhhcCCC
Confidence 4556666777889999665544 446666664
No 66
>PRK05636 replicative DNA helicase; Provisional
Probab=44.41 E-value=59 Score=35.03 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=34.7
Q ss_pred HHHHHHHhCCCEEEEecCCCcCCCCCCCCccc------CHHHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAI------SPQGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 338 l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~l------t~~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
+..+..++++++||| |+++.+.- ...-+.++++.|..+|+++++||+++
T Consensus 367 ~r~~~~~~~~~lvvI---------DYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~l 421 (505)
T PRK05636 367 ARRLKQKHDLKLIVV---------DYLQLMSSGKRVESRQQEVSEFSRQLKLLAKELDVPLIAI 421 (505)
T ss_pred HHHHHHhcCCCEEEE---------cchHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 333445678899887 55544421 12457788999999999999998876
No 67
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=44.26 E-value=24 Score=33.37 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=15.1
Q ss_pred eEEEEEecccccCccceeccc
Q psy8529 275 STAMIVDLDAHQGNGYEKDFM 295 (436)
Q Consensus 275 ~rV~IvD~D~HhGnGtq~if~ 295 (436)
+||++||+|..+|| ....|.
T Consensus 30 ~~VlliD~D~~~~~-~~~~~g 49 (251)
T TIGR01969 30 KKVLALDADITMAN-LELILG 49 (251)
T ss_pred CeEEEEeCCCCCcc-ceeEeC
Confidence 69999999998876 334443
No 68
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=44.15 E-value=58 Score=26.99 Aligned_cols=72 Identities=11% Similarity=0.116 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCCeEEEEEecccccCccceeccccCCCEEEEEecCCCCCCCCeeEeeeCCCCCCchHHHHHHHHHHHH
Q psy8529 261 ISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLER 340 (436)
Q Consensus 261 vAIAa~~l~~~~g~~rV~IvD~D~HhGnGtq~if~~d~~V~~~SiH~~~~~~~g~~~NvpL~~g~~d~~yl~~~~~~l~~ 340 (436)
+.+.+.+|+++ |. .|-++|.+++..+-.+.+-...|++.-+|.+. ...+ ....+++.
T Consensus 17 l~~la~~l~~~-G~-~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~-------------------~~~~-~~~~~l~~- 73 (121)
T PF02310_consen 17 LLYLAAYLRKA-GH-EVDILDANVPPEELVEALRAERPDVVGISVSM-------------------TPNL-PEAKRLAR- 73 (121)
T ss_dssp HHHHHHHHHHT-TB-EEEEEESSB-HHHHHHHHHHTTCSEEEEEESS-------------------STHH-HHHHHHHH-
T ss_pred HHHHHHHHHHC-CC-eEEEECCCCCHHHHHHHHhcCCCcEEEEEccC-------------------cCcH-HHHHHHHH-
Confidence 45566667765 66 78899999988777777777899999999741 1112 22234443
Q ss_pred HHHHhCCCEEEEecC
Q psy8529 341 SLRSFCPDIIVYNAG 355 (436)
Q Consensus 341 ~~~~f~PdlivvsaG 355 (436)
.+++..|+..++.-|
T Consensus 74 ~~k~~~p~~~iv~GG 88 (121)
T PF02310_consen 74 AIKERNPNIPIVVGG 88 (121)
T ss_dssp HHHTTCTTSEEEEEE
T ss_pred HHHhcCCCCEEEEEC
Confidence 478889999888777
No 69
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=43.90 E-value=77 Score=28.28 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=14.8
Q ss_pred HHHHHhCCCEEEEecCCC
Q psy8529 340 RSLRSFCPDIIVYNAGTD 357 (436)
Q Consensus 340 ~~~~~f~PdlivvsaG~D 357 (436)
..+...+||+|++..|..
T Consensus 51 ~~~~~~~pd~vii~~G~N 68 (177)
T cd01844 51 ELLRDVPADLYIIDCGPN 68 (177)
T ss_pred HHHHhcCCCEEEEEeccC
Confidence 445678999999999984
No 70
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=43.84 E-value=1.4e+02 Score=31.26 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHh----cCCCEEEEeCCCCCcchHHH
Q psy8529 333 KIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARE----RRVPIVMLTSGGYLKQTARI 407 (436)
Q Consensus 333 ~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~----~~~~iv~vleGGY~~~~~~~ 407 (436)
.+++.|..+.++|+|++|+|.++. =...+|. ...+.+. +-++ .+.|++.+--.||.-.....
T Consensus 68 ~L~~~i~~~~~~~~p~~I~V~ttc~~eiIGdD----------i~~v~~~---~~~~~p~~~~~~vi~v~t~gf~g~~~~G 134 (417)
T cd01966 68 NLEEALDTLAERAKPKVIGLLSTGLTETRGED----------IAGALKQ---FRAEHPELADVPVVYVSTPDFEGSLEDG 134 (417)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcccccccC----------HHHHHHH---HHhhccccCCCeEEEecCCCCCCcHHHH
Confidence 355666667778999987776653 3333332 2221111 1122 37788888888888543333
Q ss_pred HHHHH
Q psy8529 408 IADSI 412 (436)
Q Consensus 408 ~~~~v 412 (436)
+...+
T Consensus 135 ~~~a~ 139 (417)
T cd01966 135 WAAAV 139 (417)
T ss_pred HHHHH
Confidence 33333
No 71
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=43.49 E-value=41 Score=36.21 Aligned_cols=72 Identities=19% Similarity=0.372 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcch----HH
Q psy8529 332 EKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT----AR 406 (436)
Q Consensus 332 ~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~~----~~ 406 (436)
..|++.|..+.++++|++|+|.+.. ....+|.++.+ . + ++-.+ +.|++.+--.||.... ..
T Consensus 71 ~~L~~aI~~~~~~~~P~~I~V~sTC~selIGdDi~~~-------~---~---~~~~~-~~pvi~v~t~gf~g~~~~g~~~ 136 (511)
T TIGR01278 71 TRLVDTVRRVDDRFKPDLIVVTPSCTSSLLQEDLGNL-------A---A---AAGLD-KSKVIVADVNAYRRKENQAADR 136 (511)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHHH-------H---H---HhccC-CCcEEEecCCCcccchhHHHHH
Confidence 3566677778889999988887765 66666654432 1 1 11122 6899999888988653 23
Q ss_pred HHHHHHHHHHc
Q psy8529 407 IIADSILNLAD 417 (436)
Q Consensus 407 ~~~~~v~~l~~ 417 (436)
++...|..++.
T Consensus 137 al~~lv~~~~~ 147 (511)
T TIGR01278 137 TLTQLVRRFAK 147 (511)
T ss_pred HHHHHHHHHHh
Confidence 44455555543
No 72
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=43.21 E-value=78 Score=32.89 Aligned_cols=58 Identities=14% Similarity=0.273 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecC-CCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcc
Q psy8529 333 KIEAGLERSLRSFCPDIIVYNAG-TDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403 (436)
Q Consensus 333 ~~~~~l~~~~~~f~PdlivvsaG-~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~ 403 (436)
.+.+.|..+.++|+|++|+|... .....+|. +..+.+. +-++.+.|++.+--.||...
T Consensus 73 ~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdD----------i~~v~~~---~~~~~~~~vi~v~t~gf~g~ 131 (410)
T cd01968 73 KLYKAILEIIERYHPKAVFVYSTCVVALIGDD----------IDAVCKT---ASEKFGIPVIPVHSPGFVGN 131 (410)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCchhhhccC----------HHHHHHH---HHHhhCCCEEEEECCCcccC
Confidence 45566667788899997766544 35555553 2222222 22235789999988888764
No 73
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=42.96 E-value=37 Score=27.24 Aligned_cols=56 Identities=25% Similarity=0.328 Sum_probs=31.0
Q ss_pred eeeCCCCCCchHHHHHHHHHHHHHHHHhCC-CEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 318 RIELAPYTEDQHYLEKIEAGLERSLRSFCP-DIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 318 NvpL~~g~~d~~yl~~~~~~l~~~~~~f~P-dlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
=|-+|||++|.. +..++. ..+ ..|+|+.--+ ++..+-.+ ..+++++.+.|++-+.
T Consensus 5 iiD~PPGTgD~~-l~~~~~--------~~~~g~ivVTTPq~-----------la~~dv~r----~~~~~~~~~vpilGvV 60 (81)
T PF10609_consen 5 IIDLPPGTGDEH-LTLMQY--------LPIDGAIVVTTPQE-----------LALADVRR----AIDMFRKLNVPILGVV 60 (81)
T ss_dssp EEE--SCSSSHH-HHHHHH--------H--SEEEEEE-CCC-------------HHHHHH----HHHHHHCTT-EEEEEE
T ss_pred EEeCCCCCCcHH-HHHHHh--------CCCCeEEEEeCCHH-----------HHHHHHHH----HHHHHHhcCCCcEEEE
Confidence 367899998874 444432 223 4888877643 44444544 4456788899999776
Q ss_pred C
Q psy8529 397 S 397 (436)
Q Consensus 397 e 397 (436)
|
T Consensus 61 E 61 (81)
T PF10609_consen 61 E 61 (81)
T ss_dssp E
T ss_pred E
Confidence 5
No 74
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=42.67 E-value=84 Score=32.71 Aligned_cols=47 Identities=28% Similarity=0.262 Sum_probs=32.3
Q ss_pred HHHHHh-CCCEEEEecCCCcCCCCCCCCccc-----CHHHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 340 RSLRSF-CPDIIVYNAGTDVLLNDPLGLLAI-----SPQGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 340 ~~~~~f-~PdlivvsaG~D~~~~Dplg~~~l-----t~~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
....++ ++++|||- .+..+.. ..+...++++.|..+|+++++||+++
T Consensus 298 ~~~~~~~~~~lvvID---------yLql~~~~~~~~~~~~~~~i~~~Lk~lAke~~i~Vi~l 350 (421)
T TIGR03600 298 RIKRKKGGLDLIVVD---------YIQLMAPTRGRDRNEELGGISRGLKALAKELDVPVVLL 350 (421)
T ss_pred HHHHhcCCCCEEEEe---------cccccCCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEe
Confidence 334455 69999873 3322221 23456788888999999999999887
No 75
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=42.46 E-value=67 Score=34.28 Aligned_cols=58 Identities=16% Similarity=0.305 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecC-CCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcc
Q psy8529 333 KIEAGLERSLRSFCPDIIVYNAG-TDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403 (436)
Q Consensus 333 ~~~~~l~~~~~~f~PdlivvsaG-~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~ 403 (436)
.|.+.|..+.++|+|++|+|... .....+|. +..+.+ ++.++.+.|++.|--.||...
T Consensus 106 kL~~~I~ei~~~~~P~~I~V~tTC~~~lIGdD----------i~~v~~---~~~~~~~~pvi~v~t~Gf~g~ 164 (475)
T PRK14478 106 KLFKAIDEIIEKYAPPAVFVYQTCVVALIGDD----------IDAVCK---RAAEKFGIPVIPVNSPGFVGN 164 (475)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCChHHHhccC----------HHHHHH---HHHHhhCCCEEEEECCCcccc
Confidence 45556666778899998776554 35555553 222222 222335889999988888753
No 76
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=42.40 E-value=1.9e+02 Score=25.57 Aligned_cols=97 Identities=15% Similarity=0.193 Sum_probs=45.0
Q ss_pred eCCCCCCchHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCH-HHHHHHHHHHHHHHHhcCCCEEEEe--
Q psy8529 320 ELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISP-QGIIRRDELVFMKARERRVPIVMLT-- 396 (436)
Q Consensus 320 pL~~g~~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~-~~~~~~~~~l~~~a~~~~~~iv~vl-- 396 (436)
..++..+..+=+..+.+-|..++++|+||.+++ .+++-.-|.++ -...+.--.+.-.+.+.++|+..+-
T Consensus 32 ~t~~~~~~~~Rl~~I~~~l~~li~~~~P~~vai--------E~~f~~~n~~s~~~l~~arGvi~l~~~~~~i~v~~y~P~ 103 (149)
T PF02075_consen 32 KTSSKDSLPERLKEIYEELEELIEEYNPDEVAI--------EEIFFGKNPKSALKLGQARGVILLAAAQRGIPVFEYTPS 103 (149)
T ss_dssp E---S--HHHHHHHHHHHHHHHHHHH--SEEEE--------EE-S----HHHHHHHHHHHHHHHHHHHTTT--EEEEEHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHhhCCCEEEe--------ehhhhccCHHHHHHHHHHHHHHHHHHHHcCCeEEEECHH
Confidence 334443444555556667888999999999998 55555444322 2233333334444566788877652
Q ss_pred -----CCCCCcchHHHHHHHHHHHHccCCCCCC
Q psy8529 397 -----SGGYLKQTARIIADSILNLADLGLISRP 424 (436)
Q Consensus 397 -----eGGY~~~~~~~~~~~v~~l~~~~l~~~~ 424 (436)
--||-...=+.+...|..+++.+....|
T Consensus 104 ~vKk~vtG~G~A~KeqV~~mv~~ll~l~~~~~~ 136 (149)
T PF02075_consen 104 EVKKAVTGNGRASKEQVAFMVRKLLGLDEKPKP 136 (149)
T ss_dssp HHHHHHTSSTT--HHHHHHHHHHHTT----SS-
T ss_pred HHHHHhhCCCccCHHHHHHHHHHHhCCCCCCCc
Confidence 1344433334577888888876544333
No 77
>PRK06321 replicative DNA helicase; Provisional
Probab=42.30 E-value=82 Score=33.66 Aligned_cols=50 Identities=26% Similarity=0.287 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCCEEEEecCCCcCCCCCCCCccc---------CHHHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAI---------SPQGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 337 ~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~l---------t~~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
.+..+..+++.++||| |+++-+.- ....+.++++.|..+|+++++||+++
T Consensus 327 ~~r~~~~~~~~~lvvI---------DyLql~~~~~~~~~~~~r~~ei~~Isr~LK~lAkel~vpVi~l 385 (472)
T PRK06321 327 RARRMKESYDIQFLII---------DYLQLLSGSGNLRNSESRQTEISEISRMLKNLARELNIPILCL 385 (472)
T ss_pred HHHHHHHhcCCCEEEE---------cchHHcCCCCccCCcchHHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 3334445677888887 55554321 13457788999999999999999876
No 78
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=41.89 E-value=84 Score=31.42 Aligned_cols=52 Identities=21% Similarity=0.326 Sum_probs=39.3
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEe--CCCCCcch------HHHHHHHHHHHHccCCC
Q psy8529 369 ISPQGIIRRDELVFMKARERRVPIVMLT--SGGYLKQT------ARIIADSILNLADLGLI 421 (436)
Q Consensus 369 lt~~~~~~~~~~l~~~a~~~~~~iv~vl--eGGY~~~~------~~~~~~~v~~l~~~~l~ 421 (436)
-.++||++..+ ++++|++++.||+.+. -|-|---. ++++|.++..+.....+
T Consensus 131 ~~PeGyRKAlR-lm~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvP 190 (317)
T COG0825 131 PRPEGYRKALR-LMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVP 190 (317)
T ss_pred CCchHHHHHHH-HHHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCC
Confidence 46899999766 6689999999998774 78786432 66888888877766544
No 79
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=41.73 E-value=1e+02 Score=31.66 Aligned_cols=66 Identities=15% Similarity=0.124 Sum_probs=49.0
Q ss_pred CchHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy8529 326 EDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYL 401 (436)
Q Consensus 326 ~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~ 401 (436)
.-+++..+|.+++. .+.+-++|+||+ .||=+=.-+-+++.-....+.+..+. +.++|++++- |.=+
T Consensus 21 r~~d~~~~f~~~l~-~a~~~~vD~vli-------AGDlFd~~~Ps~~a~~~~~~~l~~l~-~~~Ipv~~I~-GNHD 86 (390)
T COG0420 21 RLEDQKKAFDELLE-IAKEEKVDFVLI-------AGDLFDTNNPSPRALKLFLEALRRLK-DAGIPVVVIA-GNHD 86 (390)
T ss_pred chHHHHHHHHHHHH-HHHHccCCEEEE-------ccccccCCCCCHHHHHHHHHHHHHhc-cCCCcEEEec-CCCC
Confidence 45788899998887 678889999997 35666666788888888777776654 3678988764 4433
No 80
>PRK13236 nitrogenase reductase; Reviewed
Probab=41.15 E-value=28 Score=34.57 Aligned_cols=27 Identities=19% Similarity=0.054 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhCCCceEEEEeccCCCCC
Q psy8529 42 ISLLVKLLFQSKSISTAMIVDLDAHQFS 69 (436)
Q Consensus 42 ~a~a~~~~~~~~~~~rv~iiD~D~h~g~ 69 (436)
+|+-+.+.+.+.| +||++||+|.+.+|
T Consensus 22 ~a~NLA~~La~~G-~rVLliD~D~q~~~ 48 (296)
T PRK13236 22 TSQNTLAAMAEMG-QRILIVGCDPKADS 48 (296)
T ss_pred HHHHHHHHHHHCC-CcEEEEEccCCCCc
Confidence 3444444444443 69999999999988
No 81
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.02 E-value=1.6e+02 Score=28.52 Aligned_cols=61 Identities=11% Similarity=0.076 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 328 QHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 328 ~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
++....|++++. .+.+.+||+|+++ ||=+-...-+.+....+.+.+..+.+...+|++++.
T Consensus 22 ~~~~~~l~~l~~-~~~~~~~D~lli~-------GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~ 82 (253)
T TIGR00619 22 AEQKAFLDDLLE-FAKAEQIDALLVA-------GDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVIS 82 (253)
T ss_pred HHHHHHHHHHHH-HHHHcCCCEEEEC-------CccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 345567777665 5677899999873 333323233343333344445444432237877765
No 82
>PRK08006 replicative DNA helicase; Provisional
Probab=40.88 E-value=81 Score=33.67 Aligned_cols=46 Identities=26% Similarity=0.350 Sum_probs=33.2
Q ss_pred HHHh-CCCEEEEecCCCcCCCCCCCCccc------CHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 342 LRSF-CPDIIVYNAGTDVLLNDPLGLLAI------SPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 342 ~~~f-~PdlivvsaG~D~~~~Dplg~~~l------t~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
..++ ++++||| |+++-+.. ....+.++++.|..+|+++++||+++-
T Consensus 331 ~~~~~~~~lvvI---------DYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~Ls 383 (471)
T PRK08006 331 FREHGGLSLIMI---------DYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALS 383 (471)
T ss_pred HHhcCCCCEEEE---------ccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 3445 5788887 55544322 234688999999999999999988873
No 83
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=40.68 E-value=64 Score=27.27 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCc
Q psy8529 332 EKIEAGLERSLRSFCPDIIVYNAGTDV 358 (436)
Q Consensus 332 ~~~~~~l~~~~~~f~PdlivvsaG~D~ 358 (436)
..+.+.|..++++++||+|+.-...|.
T Consensus 86 ~~~~~~l~~~i~~~~p~~V~t~~~~~~ 112 (128)
T PF02585_consen 86 EELVRDLEDLIREFRPDVVFTPDPDDG 112 (128)
T ss_dssp HHHHHHHHHHHHHH-ESEEEEE-STTS
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 345556777889999999999888776
No 84
>PRK05748 replicative DNA helicase; Provisional
Probab=40.39 E-value=1e+02 Score=32.52 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=34.2
Q ss_pred HHHHHHHh-CCCEEEEecCCCcCCCCCCCCccc-------CHHHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 338 LERSLRSF-CPDIIVYNAGTDVLLNDPLGLLAI-------SPQGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 338 l~~~~~~f-~PdlivvsaG~D~~~~Dplg~~~l-------t~~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
+..+..++ ++++||| |+++.+.. ....+.++.+.|..+|+++++|++++
T Consensus 305 ~r~~~~~~~~~~~vvI---------DyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke~~i~vi~l 361 (448)
T PRK05748 305 CRRLAQEHGGLGLILI---------DYLQLIQGSGRSGENRQQEVSEISRSLKALAKELKVPVIAL 361 (448)
T ss_pred HHHHHHhcCCCCEEEE---------ccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhCCeEEEe
Confidence 33445566 7999887 44444321 12457788889999999999998886
No 85
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=40.14 E-value=95 Score=30.61 Aligned_cols=63 Identities=5% Similarity=0.059 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcc
Q psy8529 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403 (436)
Q Consensus 329 ~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~ 403 (436)
+|.+.|++.+ |-+..|+-..+||-.|-.+..+| .+..+.+.+..+ .+.+.++|+|.+||....
T Consensus 1 ~~~~~~~~~~-~yi~~~~~~~~VIKlGG~ai~~~----------~l~~~~~~ia~l-~~~g~~~ViVHGggp~i~ 63 (280)
T cd04237 1 QFVDWFREAA-PYINAHRGKTFVIAFGGEAVAHP----------NFDNIVHDIALL-HSLGIRLVLVHGARPQID 63 (280)
T ss_pred ChHHHHHHHh-HHHHHhCCCEEEEEEChHHhcCc----------hHHHHHHHHHHH-HHCCCcEEEEeCCCHHHH
Confidence 4778888865 46889998999999987777654 122233333333 234789999999988754
No 86
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=39.72 E-value=1.3e+02 Score=31.71 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 335 ~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
+.|+. .+++-+|+++||-+=-=.+..+ +..--=|....++++..|+++|++.++++++|+
T Consensus 158 e~I~~-~l~~~~p~lvVIDSIQT~~s~~-~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVG 217 (456)
T COG1066 158 EDIIA-ELEQEKPDLVVIDSIQTLYSEE-ITSAPGSVSQVREVAAELMRLAKTKNIAIFIVG 217 (456)
T ss_pred HHHHH-HHHhcCCCEEEEeccceeeccc-ccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 34343 4667899999984432222222 333334566799999999999999998888774
No 87
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=39.03 E-value=69 Score=32.54 Aligned_cols=75 Identities=17% Similarity=0.226 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCCCeEEEEEecccccCccceeccccCCCEEEEEecCCCCCCCCeeEeeeCCCCCCchHHHHHHHHHHHH
Q psy8529 261 ISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLER 340 (436)
Q Consensus 261 vAIAa~~l~~~~g~~rV~IvD~D~HhGnGtq~if~~d~~V~~~SiH~~~~~~~g~~~NvpL~~g~~d~~yl~~~~~~l~~ 340 (436)
.+.++.++.+..+.+||+||+-|.=.|.|..+.|..-= .....+ .....+..++..| |..++.
T Consensus 135 ~~~~~~~l~~~~~~k~v~ii~~~~~yg~~~~~~~~~~l---------~~~G~~-~~~~~~~~~~~~~------~~~~v~- 197 (366)
T COG0683 135 AAAAADYLVKKGGKKRVAIIGDDYAYGEGLADAFKAAL---------KALGGE-VVVEEVYAPGDTD------FSALVA- 197 (366)
T ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCcchhHHHHHHHHH---------HhCCCe-EEEEEeeCCCCCC------hHHHHH-
Confidence 45577888887666799999999999999999886420 000011 1122334444434 555555
Q ss_pred HHHHhCCCEEEE
Q psy8529 341 SLRSFCPDIIVY 352 (436)
Q Consensus 341 ~~~~f~Pdlivv 352 (436)
.+.+.+||.|++
T Consensus 198 ~i~~~~~d~v~~ 209 (366)
T COG0683 198 KIKAAGPDAVLV 209 (366)
T ss_pred HHHhcCCCEEEE
Confidence 366789995554
No 88
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=38.93 E-value=1.3e+02 Score=32.37 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcch----HH
Q psy8529 332 EKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT----AR 406 (436)
Q Consensus 332 ~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~~----~~ 406 (436)
..|.+.|..+.++|+|++|+|.++. =...+|. ...+.+. +.++.+.||+.+--.||.... .+
T Consensus 71 ~kL~~~I~~~~~~~~P~~I~V~tTC~~eiIGDD----------i~~v~~~---~~~~~~~pVi~v~t~~f~g~~~~g~~~ 137 (513)
T CHL00076 71 EKVVDNITRKDKEERPDLIVLTPTCTSSILQED----------LQNFVDR---ASIESDSDVILADVNHYRVNELQAADR 137 (513)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCchhhhhcC----------HHHHHHH---hhcccCCCEEEeCCCCCcccHHHHHHH
Confidence 4466666678889999999998774 2222222 2222222 222358899999999999653 22
Q ss_pred HHHHHHHHHHc
Q psy8529 407 IIADSILNLAD 417 (436)
Q Consensus 407 ~~~~~v~~l~~ 417 (436)
.+...+..++.
T Consensus 138 ~l~~lv~~~~~ 148 (513)
T CHL00076 138 TLEQIVRFYLE 148 (513)
T ss_pred HHHHHHHHHhh
Confidence 44455555554
No 89
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=38.82 E-value=1.4e+02 Score=31.21 Aligned_cols=32 Identities=13% Similarity=0.379 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhCCCEEEEec-CCCcCCCCC
Q psy8529 332 EKIEAGLERSLRSFCPDIIVYNA-GTDVLLNDP 363 (436)
Q Consensus 332 ~~~~~~l~~~~~~f~Pdlivvsa-G~D~~~~Dp 363 (436)
..+++.|..+.++++|++|+|.. ......+|.
T Consensus 70 ~kL~~aI~~~~~~~~P~~I~V~ttc~~~iiGdD 102 (429)
T cd03466 70 KNLKKGLKNVIEQYNPEVIGIATTCLSETIGED 102 (429)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCchHHHhhcC
Confidence 35666677788889999766544 345555554
No 90
>PRK13236 nitrogenase reductase; Reviewed
Probab=38.76 E-value=29 Score=34.39 Aligned_cols=29 Identities=10% Similarity=0.065 Sum_probs=19.6
Q ss_pred HHHHhcCCCeEEEEEecccccCccceecccc
Q psy8529 266 KLLFQSKSISTAMIVDLDAHQGNGYEKDFMN 296 (436)
Q Consensus 266 ~~l~~~~g~~rV~IvD~D~HhGnGtq~if~~ 296 (436)
.+++.+.| +||++||+|.+.+| |.-+|..
T Consensus 27 A~~La~~G-~rVLliD~D~q~~~-~~~l~~~ 55 (296)
T PRK13236 27 LAAMAEMG-QRILIVGCDPKADS-TRLMLHS 55 (296)
T ss_pred HHHHHHCC-CcEEEEEccCCCCc-cchhccC
Confidence 33344434 69999999999977 5555543
No 91
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=38.68 E-value=1e+02 Score=29.23 Aligned_cols=45 Identities=16% Similarity=0.079 Sum_probs=32.4
Q ss_pred HHhCCCEEEEecCCCcCCCCCCCCc----ccCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 343 RSFCPDIIVYNAGTDVLLNDPLGLL----AISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 343 ~~f~PdlivvsaG~D~~~~Dplg~~----~lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
...+|++||+ ||+..+ .........+.+.+.+++++.++.++++.
T Consensus 108 ~~~~~~lvvi---------Dpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~ 156 (239)
T cd01125 108 LIRRIDLVVI---------DPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVH 156 (239)
T ss_pred HhcCCCEEEE---------CChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 3578999997 466543 34566667777778888888888877775
No 92
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=38.15 E-value=65 Score=30.96 Aligned_cols=59 Identities=20% Similarity=0.161 Sum_probs=35.8
Q ss_pred HHHHHHHHHHH-hCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 334 IEAGLERSLRS-FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 334 ~~~~l~~~~~~-f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
++..+..+..+ .++++|||--=--.-..++.. =..+.+..+.+.|.++|+++++||+++
T Consensus 117 i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~---~~~~~~~~i~~~Lk~lA~~~~i~vi~~ 176 (259)
T PF03796_consen 117 IESKIRRLKREGKKVDVVFIDYLQLLKSEDSSD---NRRQEIGEISRELKALAKELNIPVIAL 176 (259)
T ss_dssp HHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSS---CCHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHhhccCCCEEEechHHHhcCCCCCC---CHHHHHHHHHHHHHHHHHHcCCeEEEc
Confidence 44445445555 677788873211111111111 135667888889999999999998876
No 93
>KOG3022|consensus
Probab=38.00 E-value=2.8e+02 Score=27.75 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=24.9
Q ss_pred CeEEEEEeccc----------------ccCccceeccccCCCEEEEEec
Q psy8529 274 ISTAMIVDLDA----------------HQGNGYEKDFMNETRIFIMETC 306 (436)
Q Consensus 274 ~~rV~IvD~D~----------------HhGnGtq~if~~d~~V~~~SiH 306 (436)
-.||.++|+|+ |.++....=.+.+.++-.+|+-
T Consensus 76 g~~vglLD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv~~~~~l~~mS~g 124 (300)
T KOG3022|consen 76 GKKVGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPVVVNKNLKLMSMG 124 (300)
T ss_pred CCcEEEEeecccCCCchhhcCCCCceeeecCCCceeeeecCCeEEEEee
Confidence 36999999995 6666655555777888888874
No 94
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=37.42 E-value=30 Score=34.17 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCCEEEEecCCCcCCCCCCCC
Q psy8529 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGL 366 (436)
Q Consensus 336 ~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~ 366 (436)
+.+.+++++++||+||+ .|-|+...+.-..
T Consensus 143 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~~d~ 172 (283)
T TIGR02855 143 EKVLDLIEEVRPDILVI-TGHDAYSKNKGNY 172 (283)
T ss_pred HHHHHHHHHhCCCEEEE-eCchhhhcCCCCh
Confidence 45667899999998876 8999997654433
No 95
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=37.42 E-value=51 Score=32.74 Aligned_cols=54 Identities=20% Similarity=0.248 Sum_probs=40.4
Q ss_pred HHHHHHHhCCCEEEEecCC---CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 338 LERSLRSFCPDIIVYNAGT---DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 338 l~~~~~~f~PdlivvsaG~---D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
+.+++++.+||+||-+|.+ |..+.+|.--+.+...+=. .|.+.|++.|.++|-+
T Consensus 42 v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~----~lA~aa~~~ga~lVhi 98 (281)
T COG1091 42 VLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAE----NLARAAAEVGARLVHI 98 (281)
T ss_pred HHHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHH----HHHHHHHHhCCeEEEe
Confidence 5567788899999999986 8888887666556555544 4666788889998754
No 96
>PHA02542 41 41 helicase; Provisional
Probab=36.93 E-value=1.2e+02 Score=32.42 Aligned_cols=62 Identities=21% Similarity=0.132 Sum_probs=38.6
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcc---------cCHHHHHHHHHHHHHHHHhcCCCEE
Q psy8529 323 PYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLA---------ISPQGIIRRDELVFMKARERRVPIV 393 (436)
Q Consensus 323 ~g~~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~---------lt~~~~~~~~~~l~~~a~~~~~~iv 393 (436)
++.+-.+....+++... -..+++|+|||- .+.-+. =..+-+.++.+.|..+|+++++||+
T Consensus 280 ~~lt~~~ir~~~rrlk~--~~g~~~dlVvID---------YLqL~~~~~~~~~~~nr~~ei~~Isr~LK~lAkel~vpVi 348 (473)
T PHA02542 280 GGAHAGHFRALLNELKL--KKNFKPDVIIVD---------YLGICASSRLRVSSENSYTYVKAIAEELRGLAVEHDVVVW 348 (473)
T ss_pred CCCCHHHHHHHHHHHHH--hcCCCCCEEEEe---------chhhccCCcccCCCCChHHHHHHHHHHHHHHHHHhCCeEE
Confidence 44444555555544332 123459999873 222221 1245578889999999999999988
Q ss_pred EE
Q psy8529 394 ML 395 (436)
Q Consensus 394 ~v 395 (436)
++
T Consensus 349 ~l 350 (473)
T PHA02542 349 TA 350 (473)
T ss_pred EE
Confidence 76
No 97
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=36.83 E-value=89 Score=29.03 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=27.0
Q ss_pred ccCHHHHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy8529 368 AISPQGIIRRDELVFMKARERRVPIVMLTSG 398 (436)
Q Consensus 368 ~lt~~~~~~~~~~l~~~a~~~~~~iv~vleG 398 (436)
.++++..+++++.|.+++++.+.+.++.|+|
T Consensus 26 ~~~p~~~~e~a~~vld~a~~~gv~~iitLgG 56 (188)
T TIGR00162 26 SLSPEGQYELVNAIIDVAKKYGARMIYTLGG 56 (188)
T ss_pred CCChhhHHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5778878889999999999999998888855
No 98
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=36.40 E-value=2.1e+02 Score=25.73 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=38.4
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCCEEEEe-------cCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeC
Q psy8529 325 TEDQHYLEKIEAGLERSLRSFCPDIIVYN-------AGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397 (436)
Q Consensus 325 ~~d~~yl~~~~~~l~~~~~~f~Pdlivvs-------aG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vle 397 (436)
+=+.+.++.|.+.+..+-..-....||+. +|.|...--......-....+....+.+......+..|++.+..
T Consensus 22 ~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~ 101 (195)
T cd06558 22 ALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVN 101 (195)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 33567777777777655443455577764 34443321100000001233444444444444557889998875
Q ss_pred CCCCc
Q psy8529 398 GGYLK 402 (436)
Q Consensus 398 GGY~~ 402 (436)
|+-.
T Consensus 102 -G~a~ 105 (195)
T cd06558 102 -GAAL 105 (195)
T ss_pred -Ceee
Confidence 4443
No 99
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=34.87 E-value=1.7e+02 Score=28.34 Aligned_cols=53 Identities=11% Similarity=0.038 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCCCEEEEecCCCcCCCCCCCCccc-CHHHHHHHHHHHHHHHHhcCCCEEEEeC
Q psy8529 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAI-SPQGIIRRDELVFMKARERRVPIVMLTS 397 (436)
Q Consensus 336 ~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~l-t~~~~~~~~~~l~~~a~~~~~~iv~vle 397 (436)
..+...+++++|++||+ |++..+.. ....+.+....+..++++.+..++++-+
T Consensus 121 ~~l~~~i~~~~~~~vVI---------DSls~l~~~~~~~~r~~~~~L~~~lk~~~~t~ll~~e 174 (259)
T TIGR03878 121 ATLAYAIKEYKVKNTVI---------DSITGLYEAKEMMAREIVRQLFNFMKKWYQTALFVSQ 174 (259)
T ss_pred HHHHHHHHhhCCCEEEE---------cCchHhcccchHHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 34455678899999987 55553322 2344566666677888888988888764
No 100
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=34.55 E-value=60 Score=31.53 Aligned_cols=48 Identities=15% Similarity=0.362 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeC
Q psy8529 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397 (436)
Q Consensus 334 ~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vle 397 (436)
.++.+...+++|+||++|+.+ |.+.. .|=.. ..++..+.++|.+++.-
T Consensus 47 ~e~~~~~~~~~~~pdf~I~is--------PN~~~----PGP~~----ARE~l~~~~iP~IvI~D 94 (276)
T PF01993_consen 47 VEEVVTKMLKEWDPDFVIVIS--------PNAAA----PGPTK----AREMLSAKGIPCIVISD 94 (276)
T ss_dssp HHHHHHHHHHHH--SEEEEE---------S-TTS----HHHHH----HHHHHHHSSS-EEEEEE
T ss_pred HHHHHHHHHHhhCCCEEEEEC--------CCCCC----CCcHH----HHHHHHhCCCCEEEEcC
Confidence 445666677899999999853 33321 22222 12233446999988864
No 101
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=34.31 E-value=51 Score=31.93 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=11.1
Q ss_pred eEEEEEecccccC
Q psy8529 275 STAMIVDLDAHQG 287 (436)
Q Consensus 275 ~rV~IvD~D~HhG 287 (436)
+||++||+|...+
T Consensus 29 ~~VlliD~D~q~~ 41 (275)
T TIGR01287 29 KKVMIVGCDPKAD 41 (275)
T ss_pred CeEEEEeCCCCCC
Confidence 6999999998843
No 102
>PRK10818 cell division inhibitor MinD; Provisional
Probab=33.90 E-value=47 Score=31.98 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=16.9
Q ss_pred HHHHHHHhhCCCceEEEEeccCCCCC
Q psy8529 44 LLVKLLFQSKSISTAMIVDLDAHQFS 69 (436)
Q Consensus 44 ~a~~~~~~~~~~~rv~iiD~D~h~g~ 69 (436)
+.+.++..+.| +||++||+|...+|
T Consensus 21 ~nlA~~la~~g-~~vllvD~D~~~~~ 45 (270)
T PRK10818 21 AAIATGLAQKG-KKTVVIDFDIGLRN 45 (270)
T ss_pred HHHHHHHHHCC-CeEEEEECCCCCCC
Confidence 33333333333 69999999998887
No 103
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=33.36 E-value=2.2e+02 Score=29.92 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecC-CCcCCCCC
Q psy8529 332 EKIEAGLERSLRSFCPDIIVYNAG-TDVLLNDP 363 (436)
Q Consensus 332 ~~~~~~l~~~~~~f~PdlivvsaG-~D~~~~Dp 363 (436)
+.+++.|..+.++++|++|+|..+ .....+|.
T Consensus 71 ~~L~~ai~~~~~~~~p~~I~v~ttC~~~iiGdD 103 (435)
T cd01974 71 NNLIDGLKNAYAVYKPDMIAVSTTCMAEVIGDD 103 (435)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCchHhhhhcc
Confidence 346667777888999997766554 35555553
No 104
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.32 E-value=88 Score=29.02 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=32.6
Q ss_pred eeeCCCCCCchHHHHHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCC
Q psy8529 318 RIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLG 365 (436)
Q Consensus 318 NvpL~~g~~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg 365 (436)
.|.|-.--+.++-++.+..++. ++++|.|+-++|.||+ |+|+---..
T Consensus 85 KVGLYg~kn~~eA~e~m~~vvr-AVkd~d~~k~VVAaGYaDa~Rvgsv~ 132 (235)
T COG1891 85 KVGLYGTKNEEEALEVMKNVVR-AVKDFDPSKKVVAAGYADAHRVGSVS 132 (235)
T ss_pred EEeecccccHHHHHHHHHHHHH-HHhccCCCceEEeccccchhhccCcC
Confidence 3444432344666677776554 7899999999999998 888755433
No 105
>KOG4184|consensus
Probab=33.05 E-value=47 Score=34.00 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEe
Q psy8529 329 HYLEKIEAGLERSLRSFCPDIIVYN 353 (436)
Q Consensus 329 ~yl~~~~~~l~~~~~~f~Pdlivvs 353 (436)
.-+.+++... .++++|+||+||||
T Consensus 222 ~~m~~~E~f~-~Al~~fqPdLvVvs 245 (478)
T KOG4184|consen 222 PHMRAVEQFT-DALKMFQPDLVVVS 245 (478)
T ss_pred hHHHHHHHHH-HHHHHhCCCEEEEe
Confidence 4466776544 57999999999985
No 106
>PRK10818 cell division inhibitor MinD; Provisional
Probab=33.00 E-value=46 Score=32.09 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=13.6
Q ss_pred eEEEEEecccccCccc
Q psy8529 275 STAMIVDLDAHQGNGY 290 (436)
Q Consensus 275 ~rV~IvD~D~HhGnGt 290 (436)
+||++||+|.+.+|-+
T Consensus 32 ~~vllvD~D~~~~~~~ 47 (270)
T PRK10818 32 KKTVVIDFDIGLRNLD 47 (270)
T ss_pred CeEEEEECCCCCCChh
Confidence 6999999999887743
No 107
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=32.70 E-value=1.7e+02 Score=29.62 Aligned_cols=49 Identities=22% Similarity=0.359 Sum_probs=33.7
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEe-CCCCCcch-------HHHHHHHHHHHHcc
Q psy8529 369 ISPQGIIRRDELVFMKARERRVPIVMLT-SGGYLKQT-------ARIIADSILNLADL 418 (436)
Q Consensus 369 lt~~~~~~~~~~l~~~a~~~~~~iv~vl-eGGY~~~~-------~~~~~~~v~~l~~~ 418 (436)
+++++|.+..++ +++|.++++|+|.+. ..|+.+.. ++.++.++..+...
T Consensus 132 ~~p~g~rKa~R~-m~lA~~f~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~ 188 (316)
T TIGR00513 132 PAPEGYRKALRL-MKMAERFKMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARL 188 (316)
T ss_pred CCHHHHHHHHHH-HHHHHHcCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 778999998875 578999999998765 55555322 34555666555443
No 108
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=32.20 E-value=1.9e+02 Score=28.39 Aligned_cols=52 Identities=21% Similarity=0.376 Sum_probs=35.8
Q ss_pred ccCHHHHHHHHHHHHHHHHhcCCCEEEEe-CCCCCcch-------HHHHHHHHHHHHccCC
Q psy8529 368 AISPQGIIRRDELVFMKARERRVPIVMLT-SGGYLKQT-------ARIIADSILNLADLGL 420 (436)
Q Consensus 368 ~lt~~~~~~~~~~l~~~a~~~~~~iv~vl-eGGY~~~~-------~~~~~~~v~~l~~~~l 420 (436)
.+++++|.+..++ +++|.++++|+|.+. .+|+.+.. ++.++.++..+.+...
T Consensus 78 ~~~~~g~rKa~R~-~~lA~~~~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~V 137 (256)
T PRK12319 78 QPHPEGYRKALRL-MKQAEKFGRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKV 137 (256)
T ss_pred CCCHHHHHHHHHH-HHHHHHcCCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCC
Confidence 3789999998875 578999999999875 55555432 2455666666555443
No 109
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=32.17 E-value=1.1e+02 Score=32.44 Aligned_cols=70 Identities=9% Similarity=0.176 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHh-CCCEE-EEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHh--------cCCCEEEEeCCCCCcc
Q psy8529 334 IEAGLERSLRSF-CPDII-VYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE--------RRVPIVMLTSGGYLKQ 403 (436)
Q Consensus 334 ~~~~l~~~~~~f-~Pdli-vvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~--------~~~~iv~vleGGY~~~ 403 (436)
+++.|..+.++| +|++| |++++.....||.+.. +.+. +-++ .+.|++.|-.+||.-.
T Consensus 80 L~~ai~~~~~~~~~p~~i~v~ttc~~eiiGDDi~~----------v~~~---~~~~~~~~~~p~~~~~ii~v~tpgF~gs 146 (461)
T TIGR02931 80 VEEAVDVLLTRYPDVKVVPIITTCSTEIIGDDVDG----------LISK---LNEELLKEKFPDREVHLIPIHTPSFVGS 146 (461)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCchHHhhhcCHHH----------HHHH---HHhhhcccccCCCCCeEEEeeCCCCCCc
Confidence 666777788889 59976 5566667777774322 1111 1111 1457788877777654
Q ss_pred hHHHHHHHHHHHH
Q psy8529 404 TARIIADSILNLA 416 (436)
Q Consensus 404 ~~~~~~~~v~~l~ 416 (436)
........+.+++
T Consensus 147 ~~~Gy~~a~~ali 159 (461)
T TIGR02931 147 MITGYDVAVHDFV 159 (461)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 110
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=31.83 E-value=49 Score=32.23 Aligned_cols=20 Identities=10% Similarity=0.204 Sum_probs=13.9
Q ss_pred HHHhhCCCceEEEEeccCCCCC
Q psy8529 48 LLFQSKSISTAMIVDLDAHQFS 69 (436)
Q Consensus 48 ~~~~~~~~~rv~iiD~D~h~g~ 69 (436)
+.+.+.| +||++||+|.. ||
T Consensus 23 ~~La~~G-~rVLliD~Dpq-~n 42 (279)
T PRK13230 23 AALAESG-KKVLVVGCDPK-AD 42 (279)
T ss_pred HHHHhCC-CEEEEEeeCCc-cc
Confidence 3334443 69999999994 55
No 111
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=31.33 E-value=2.5e+02 Score=26.88 Aligned_cols=74 Identities=14% Similarity=0.202 Sum_probs=35.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCCEEEE-------ecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 324 YTEDQHYLEKIEAGLERSLRSFCPDIIVY-------NAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 324 g~~d~~yl~~~~~~l~~~~~~f~Pdlivv-------saG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
+.=+.+.+..|.+.+..+-..-....||+ |+|.|...-..... .-....+....+.++.....+..|+|...
T Consensus 23 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~kpvIAav 101 (257)
T PRK07658 23 NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTE-AEQATELAQLGQVTFERVEKFSKPVIAAI 101 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCc-hhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 44578888888887775433222334444 56666542110000 00111222222323333345788998776
Q ss_pred CC
Q psy8529 397 SG 398 (436)
Q Consensus 397 eG 398 (436)
.|
T Consensus 102 ~G 103 (257)
T PRK07658 102 HG 103 (257)
T ss_pred cC
Confidence 44
No 112
>CHL00175 minD septum-site determining protein; Validated
Probab=30.83 E-value=57 Score=31.72 Aligned_cols=14 Identities=14% Similarity=0.128 Sum_probs=13.1
Q ss_pred ceEEEEeccCCCCC
Q psy8529 56 STAMIVDLDAHQFS 69 (436)
Q Consensus 56 ~rv~iiD~D~h~g~ 69 (436)
+||++||+|..+||
T Consensus 45 ~~vlliD~D~~~~~ 58 (281)
T CHL00175 45 YRVALIDADIGLRN 58 (281)
T ss_pred CeEEEEeCCCCCCC
Confidence 69999999999998
No 113
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=30.73 E-value=62 Score=28.53 Aligned_cols=14 Identities=14% Similarity=0.180 Sum_probs=12.9
Q ss_pred ceEEEEeccCCCCC
Q psy8529 56 STAMIVDLDAHQFS 69 (436)
Q Consensus 56 ~rv~iiD~D~h~g~ 69 (436)
.||++||+|..++|
T Consensus 29 ~~vllvD~D~~~~~ 42 (179)
T cd02036 29 YKVVLIDADLGLRN 42 (179)
T ss_pred CeEEEEeCCCCCCC
Confidence 69999999999887
No 114
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=30.50 E-value=1.9e+02 Score=30.49 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=35.6
Q ss_pred ccCHHHHHHHHHHHHHHHHhcCCCEEEEe-CCCCCcch-------HHHHHHHHHHHHccCC
Q psy8529 368 AISPQGIIRRDELVFMKARERRVPIVMLT-SGGYLKQT-------ARIIADSILNLADLGL 420 (436)
Q Consensus 368 ~lt~~~~~~~~~~l~~~a~~~~~~iv~vl-eGGY~~~~-------~~~~~~~v~~l~~~~l 420 (436)
.+++++|.+..++ +++|.++++|||.+. ..|+.+.. ++.++.++..+.+...
T Consensus 201 ~~~peGyRKAlR~-mklAekf~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~V 260 (431)
T PLN03230 201 MPQPNGYRKALRF-MRHAEKFGFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRV 260 (431)
T ss_pred CCCHHHHHHHHHH-HHHHHHcCCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCC
Confidence 4889999998875 578999999988765 45554432 3345666665555433
No 115
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=30.43 E-value=71 Score=29.08 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=30.7
Q ss_pred hCCCEEEEecCC-CcCCCCC-------CCCcccCHHHHHHHHHHHHHHHHhc--CCCEEEE
Q psy8529 345 FCPDIIVYNAGT-DVLLNDP-------LGLLAISPQGIIRRDELVFMKARER--RVPIVML 395 (436)
Q Consensus 345 f~PdlivvsaG~-D~~~~Dp-------lg~~~lt~~~~~~~~~~l~~~a~~~--~~~iv~v 395 (436)
.+||+|++..|. |...+-+ ...+..+.+.|.+..+.+.+.+++. +.+|+++
T Consensus 67 ~~~d~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ir~~~p~~~Ivv~ 127 (204)
T cd04506 67 KKADVITITIGGNDLMQVLEKNFLSLDVEDFKKAEETYQNNLKKIFKEIRKLNPDAPIFLV 127 (204)
T ss_pred ccCCEEEEEecchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 489999999998 6543211 2233345566766666666666654 3455544
No 116
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=30.27 E-value=5.3e+02 Score=26.21 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=26.0
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEe-CCCCCc
Q psy8529 369 ISPQGIIRRDELVFMKARERRVPIVMLT-SGGYLK 402 (436)
Q Consensus 369 lt~~~~~~~~~~l~~~a~~~~~~iv~vl-eGGY~~ 402 (436)
+++++|.+..++ +++|.++++|+|.+. ..|..+
T Consensus 135 ~~p~g~rKa~Rl-m~lA~~f~lPIItlvDTpGA~~ 168 (322)
T CHL00198 135 PSPGGYRKALRL-MKHANKFGLPILTFIDTPGAWA 168 (322)
T ss_pred CCHHHHHHHHHH-HHHHHHcCCCEEEEEeCCCcCc
Confidence 889999998875 578999999999875 444443
No 117
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=30.18 E-value=2.6e+02 Score=26.94 Aligned_cols=29 Identities=7% Similarity=0.021 Sum_probs=16.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCCEEEE
Q psy8529 324 YTEDQHYLEKIEAGLERSLRSFCPDIIVY 352 (436)
Q Consensus 324 g~~d~~yl~~~~~~l~~~~~~f~Pdlivv 352 (436)
+.=+.+.+..+.+.+..+-..-....||+
T Consensus 25 Nal~~~~~~~l~~al~~~~~d~~vr~vVl 53 (257)
T PRK06495 25 NALSRELRDELIAVFDEISERPDVRVVVL 53 (257)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCceEEEE
Confidence 34477778888887775433323334554
No 118
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=30.06 E-value=7.5 Score=30.20 Aligned_cols=36 Identities=17% Similarity=0.409 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCH
Q psy8529 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISP 371 (436)
Q Consensus 336 ~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~ 371 (436)
+++..+.++|+.++=|++++.|...+.|+|.|-+.-
T Consensus 17 piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l 52 (76)
T PF09383_consen 17 PIISQLIREFGVDVNILHGNIEEIQGTPFGILILEL 52 (76)
T ss_dssp CHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEE
T ss_pred hHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEE
Confidence 467778889999999999999999999999886644
No 119
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=30.03 E-value=59 Score=31.15 Aligned_cols=13 Identities=31% Similarity=0.393 Sum_probs=11.2
Q ss_pred ceEEEEeccCCCCC
Q psy8529 56 STAMIVDLDAHQFS 69 (436)
Q Consensus 56 ~rv~iiD~D~h~g~ 69 (436)
+||++||+|. |||
T Consensus 30 ~kVlliD~Dp-q~n 42 (270)
T cd02040 30 KKVMIVGCDP-KAD 42 (270)
T ss_pred CeEEEEEcCC-CCC
Confidence 6999999999 466
No 120
>PRK02399 hypothetical protein; Provisional
Probab=29.99 E-value=1.7e+02 Score=30.62 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=49.4
Q ss_pred CCCCCCCC-cccCHHHHHHHHHHHHHHHHhcCCCEEEEe-CCC-----------CCcchHHHHHHHHHHHHccC--CCCC
Q psy8529 359 LLNDPLGL-LAISPQGIIRRDELVFMKARERRVPIVMLT-SGG-----------YLKQTARIIADSILNLADLG--LISR 423 (436)
Q Consensus 359 ~~~Dplg~-~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl-eGG-----------Y~~~~~~~~~~~v~~l~~~~--l~~~ 423 (436)
|..+|.-. +..|.+.-+++.+.+.+-.+++.+|+.+++ .|| |+++..+++-+.++..+... +..+
T Consensus 302 ~~HNp~vTlmRTt~eE~~~~g~~ia~kLn~a~gpv~vllP~~G~S~~D~~G~~f~Dpead~alf~~l~~~l~~~~~v~~~ 381 (406)
T PRK02399 302 YKHNPQVTLMRTTPEENRQIGRWIAEKLNRAKGPVAFLIPLGGVSALDRPGQPFHDPEADAAFFDALEETVTETRRLIEV 381 (406)
T ss_pred eecCCcceeeecCHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCccccCCCCCccChhHHHHHHHHHHHhCCCCceEEEC
Confidence 44445433 788999999999999888888889977654 666 55666677778888777443 4466
Q ss_pred Cccc
Q psy8529 424 PYNI 427 (436)
Q Consensus 424 ~~~~ 427 (436)
|.|+
T Consensus 382 ~~hI 385 (406)
T PRK02399 382 PAHI 385 (406)
T ss_pred CCCC
Confidence 7665
No 121
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=29.85 E-value=91 Score=28.86 Aligned_cols=52 Identities=23% Similarity=0.440 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhc--CCCEEEEe
Q psy8529 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARER--RVPIVMLT 396 (436)
Q Consensus 334 ~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~--~~~iv~vl 396 (436)
++.-+...+.+.++|++++.+|.. .|.+.|.++..-+.+..++. ..||+++-
T Consensus 47 le~~~a~~ia~~~a~~~~ld~~~N-----------~~~~~~~~~~~~fv~~iR~~hP~tPIllv~ 100 (178)
T PF14606_consen 47 LEPEVADLIAEIDADLIVLDCGPN-----------MSPEEFRERLDGFVKTIREAHPDTPILLVS 100 (178)
T ss_dssp --HHHHHHHHHS--SEEEEEESHH-----------CCTTTHHHHHHHHHHHHHTT-SSS-EEEEE
T ss_pred cCHHHHHHHhcCCCCEEEEEeecC-----------CCHHHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 334455567778899999999966 67777888777777776663 57999886
No 122
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=29.36 E-value=95 Score=27.94 Aligned_cols=53 Identities=19% Similarity=0.304 Sum_probs=26.8
Q ss_pred HHHHHH-hCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 339 ERSLRS-FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 339 ~~~~~~-f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
...+.+ ++|++|||-.=.+.+..|. + +...+.++.+.+.++|+++++.++++.
T Consensus 133 ~~~~~~~~~~~lvviD~l~~~~~~~~----~-~~~~~~~~~~~l~~la~~~~~~vi~v~ 186 (193)
T PF13481_consen 133 EAALKELYGPDLVVIDPLQSLHDGDE----N-SNSAVAQLMQELKRLAKEYGVAVILVH 186 (193)
T ss_dssp HHHHTT----SEEEEE-GGGG--S-T----T--HHHHHHHHHHHHHHHHHH--EEEEEE
T ss_pred HHHHhhcCCCcEEEEcCHHHHhcCCC----C-CHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 345666 8899999832222222211 1 123346777888888888888877653
No 123
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=29.00 E-value=2.3e+02 Score=23.29 Aligned_cols=15 Identities=13% Similarity=0.058 Sum_probs=11.7
Q ss_pred HHHHhCCCEEEEecC
Q psy8529 341 SLRSFCPDIIVYNAG 355 (436)
Q Consensus 341 ~~~~f~PdlivvsaG 355 (436)
.+.+.+||+|.+|+-
T Consensus 45 ~i~~~~pdiV~iS~~ 59 (125)
T cd02065 45 AAKEEDADVVGLSAL 59 (125)
T ss_pred HHHHcCCCEEEEecc
Confidence 445589999999874
No 124
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=28.95 E-value=1.8e+02 Score=26.89 Aligned_cols=50 Identities=20% Similarity=0.305 Sum_probs=33.9
Q ss_pred HHHHHHHHHHH-hC-CCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 334 IEAGLERSLRS-FC-PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 334 ~~~~l~~~~~~-f~-PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
++++..|++++ ++ -|+|++ |-.|.|.+..+.|.+..+.++. ++-|+++++
T Consensus 86 le~i~~~al~rA~~~aDvIII---------DEIGpMElks~~f~~~ve~vl~----~~kpliatl 137 (179)
T COG1618 86 LEEIAIPALRRALEEADVIII---------DEIGPMELKSKKFREAVEEVLK----SGKPLIATL 137 (179)
T ss_pred HHHHhHHHHHHHhhcCCEEEE---------ecccchhhccHHHHHHHHHHhc----CCCcEEEEE
Confidence 44444444443 22 588887 8899999999999987666543 456766665
No 125
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=28.85 E-value=1.9e+02 Score=27.44 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCccc-CHHHHHHHHHHHHHHHHhcCCCEEEEeC
Q psy8529 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAI-SPQGIIRRDELVFMKARERRVPIVMLTS 397 (436)
Q Consensus 334 ~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~l-t~~~~~~~~~~l~~~a~~~~~~iv~vle 397 (436)
+.+.+...+++++++.||+ |++..+.. ++..+.+....+..++++.+..++++.+
T Consensus 114 ~~~~i~~~i~~~~~~~vVI---------DSls~l~~~~~~~~r~~l~~l~~~lk~~~~t~llt~~ 169 (237)
T TIGR03877 114 LIDVLRQAIRDINAKRVVI---------DSVTTLYITKPAMARSIVMQLKRVLSGLGCTSIFVSQ 169 (237)
T ss_pred HHHHHHHHHHHhCCCEEEE---------cChhHhhcCChHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 3344555677889998887 55554432 2333455556677778888998888754
No 126
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=28.81 E-value=3.2e+02 Score=27.75 Aligned_cols=57 Identities=18% Similarity=0.328 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcc
Q psy8529 334 IEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403 (436)
Q Consensus 334 ~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~ 403 (436)
+.+.+..++++++|++|+|..+. ....+|. +..+.+ ++.++.+.|++.+-..||...
T Consensus 68 l~~~i~~~~~~~~p~~i~v~~tc~~~liGdD----------i~~v~~---~~~~~~~~~vv~~~~~gf~~~ 125 (399)
T cd00316 68 LLEAIINELKRYKPKVIFVYTTCTTELIGDD----------IEAVAK---EASKEIGIPVVPASTPGFRGS 125 (399)
T ss_pred HHHHHHHHHHHcCCCEEEEecCchhhhhccC----------HHHHHH---HHHHhhCCceEEeeCCCCccc
Confidence 34445557778999988776653 4444443 222222 222245889999999999844
No 127
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=28.63 E-value=60 Score=31.31 Aligned_cols=13 Identities=8% Similarity=0.253 Sum_probs=11.5
Q ss_pred ceEEEEeccCCCCC
Q psy8529 56 STAMIVDLDAHQFS 69 (436)
Q Consensus 56 ~rv~iiD~D~h~g~ 69 (436)
+||++||+|. |||
T Consensus 31 ~kVLliD~Dp-q~~ 43 (270)
T PRK13185 31 KKVLQIGCDP-KHD 43 (270)
T ss_pred CeEEEEeccC-Ccc
Confidence 6999999997 677
No 128
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=28.56 E-value=51 Score=32.69 Aligned_cols=27 Identities=33% Similarity=0.564 Sum_probs=22.2
Q ss_pred HHHHHHHHHhCCCEEEEecCCCcCCCCC
Q psy8529 336 AGLERSLRSFCPDIIVYNAGTDVLLNDP 363 (436)
Q Consensus 336 ~~l~~~~~~f~PdlivvsaG~D~~~~Dp 363 (436)
+.|..++++++||+||+ .|-|+...+.
T Consensus 144 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~ 170 (287)
T PF05582_consen 144 EKIYRLLEEYRPDILVI-TGHDGYLKNK 170 (287)
T ss_pred HHHHHHHHHcCCCEEEE-eCchhhhcCC
Confidence 45667899999998876 8999987775
No 129
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=28.45 E-value=2.6e+02 Score=27.57 Aligned_cols=61 Identities=16% Similarity=0.090 Sum_probs=43.4
Q ss_pred chHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCC------CCCCcccCHHHHHHHHHHHHHHHHh
Q psy8529 327 DQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLND------PLGLLAISPQGIIRRDELVFMKARE 387 (436)
Q Consensus 327 d~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~D------plg~~~lt~~~~~~~~~~l~~~a~~ 387 (436)
+.+-...|-+.|.+++++.+=.++||.+|-=+|.-- |.|.-....+.-.++++.+.++.++
T Consensus 153 ~~~~~~~lG~al~~~i~~~~~rV~iIaSG~lSH~L~~~~~~~p~g~~~~a~~f~~~~D~~v~~~l~~ 219 (282)
T TIGR02298 153 DIEESRALGEAIRKAIEQSDGRVAVLASGSLSHRFWDNKDLAPEGMTTIASEFNRQVDLRVLELWRE 219 (282)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEEecccceecCcccCCCcccCCchhhHHHHHHHHHHHHHHHc
Confidence 566667888899988888766789999998777765 4444455555555667777776654
No 130
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=28.12 E-value=56 Score=31.67 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=12.7
Q ss_pred ceEEEEeccCCCCC
Q psy8529 56 STAMIVDLDAHQFS 69 (436)
Q Consensus 56 ~rv~iiD~D~h~g~ 69 (436)
+||++||+|.+..+
T Consensus 30 ~rVllvD~Dpq~~~ 43 (273)
T PRK13232 30 NKILLVGCDPKADS 43 (273)
T ss_pred CCeEEEeccccccc
Confidence 69999999999876
No 131
>CHL00175 minD septum-site determining protein; Validated
Probab=28.06 E-value=62 Score=31.43 Aligned_cols=17 Identities=18% Similarity=0.010 Sum_probs=14.5
Q ss_pred eEEEEEecccccCccce
Q psy8529 275 STAMIVDLDAHQGNGYE 291 (436)
Q Consensus 275 ~rV~IvD~D~HhGnGtq 291 (436)
+||++||+|...||-+.
T Consensus 45 ~~vlliD~D~~~~~l~~ 61 (281)
T CHL00175 45 YRVALIDADIGLRNLDL 61 (281)
T ss_pred CeEEEEeCCCCCCChhh
Confidence 68999999999987553
No 132
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=27.89 E-value=3.9e+02 Score=25.48 Aligned_cols=67 Identities=13% Similarity=0.212 Sum_probs=35.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCCEEEE-------ecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 324 YTEDQHYLEKIEAGLERSLRSFCPDIIVY-------NAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 324 g~~d~~yl~~~~~~l~~~~~~f~Pdlivv-------saG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
+.=+.+.+..+.+.+..+.+. ....||+ |+|.|.... .....+......++.....+..|+|...
T Consensus 22 Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~-------~~~~~~~~~~~~~~~~l~~~~kP~Iaav 93 (243)
T PRK07854 22 NALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGD-------VYADDFPDALIEMLHAIDAAPVPVIAAI 93 (243)
T ss_pred cCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccc-------hhHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 344677777777777654322 4445554 566666521 1122232222223333345688999877
Q ss_pred CC
Q psy8529 397 SG 398 (436)
Q Consensus 397 eG 398 (436)
.|
T Consensus 94 ~G 95 (243)
T PRK07854 94 NG 95 (243)
T ss_pred cC
Confidence 53
No 133
>PRK08840 replicative DNA helicase; Provisional
Probab=27.80 E-value=1.6e+02 Score=31.42 Aligned_cols=44 Identities=27% Similarity=0.325 Sum_probs=31.7
Q ss_pred HHh-CCCEEEEecCCCcCCCCCCCCccc------CHHHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 343 RSF-CPDIIVYNAGTDVLLNDPLGLLAI------SPQGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 343 ~~f-~PdlivvsaG~D~~~~Dplg~~~l------t~~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
.++ ++++||| |.++-+.. ..+.+.++++.|..+|+++++||+++
T Consensus 325 ~~~~~~~lvvI---------DYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~L 375 (464)
T PRK08840 325 REHGGLSMIMV---------DYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVAL 375 (464)
T ss_pred HhcCCCCEEEE---------ccHHhcCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 344 4788887 45554432 23457889999999999999998877
No 134
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.24 E-value=2e+02 Score=25.51 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=24.0
Q ss_pred HhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHh
Q psy8529 344 SFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARE 387 (436)
Q Consensus 344 ~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~ 387 (436)
.++||+|+++.|. |+.... .-+.+.|.+-.+.+.+.+++
T Consensus 65 ~~~pd~Vii~~G~ND~~~~~-----~~~~~~~~~~l~~li~~i~~ 104 (188)
T cd01827 65 AFNPNIVIIKLGTNDAKPQN-----WKYKDDFKKDYETMIDSFQA 104 (188)
T ss_pred ccCCCEEEEEcccCCCCCCC-----CccHHHHHHHHHHHHHHHHH
Confidence 4799999999998 655432 12345555444445454444
No 135
>PRK07773 replicative DNA helicase; Validated
Probab=27.20 E-value=1.9e+02 Score=33.46 Aligned_cols=49 Identities=27% Similarity=0.280 Sum_probs=34.9
Q ss_pred HHHHHHHhCCCEEEEecCCCcCCCCCCCCccc------CHHHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLAI------SPQGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 338 l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~l------t~~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
+..+..+.++++||| |+++-|.- ......++.+.|..+|+++++|++++
T Consensus 319 ~r~~~~~~~~~lvvI---------DyLql~~~~~~~~~r~~ei~~isr~LK~lAkel~vpvi~l 373 (886)
T PRK07773 319 ARRLRQEANLGLIVV---------DYLQLMTSGKKYENRQQEVSEISRHLKLLAKELEVPVVAL 373 (886)
T ss_pred HHHHHHhcCCCEEEE---------cchhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcEEEe
Confidence 334455678999887 44444321 13457888899999999999998887
No 136
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=27.07 E-value=3.2e+02 Score=22.39 Aligned_cols=11 Identities=27% Similarity=0.537 Sum_probs=8.9
Q ss_pred CEEEEeCCCCC
Q psy8529 391 PIVMLTSGGYL 401 (436)
Q Consensus 391 ~iv~vleGGY~ 401 (436)
+-+.+|+|||+
T Consensus 99 ~~v~~l~GG~~ 109 (113)
T cd01443 99 PKSYILTGGIK 109 (113)
T ss_pred CeEEEECChhh
Confidence 46788999986
No 137
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=26.88 E-value=2.8e+02 Score=29.43 Aligned_cols=62 Identities=15% Similarity=0.270 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHh-CCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHH----HhcCCCEEEEeCCCCCcch
Q psy8529 333 KIEAGLERSLRSF-CPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKA----RERRVPIVMLTSGGYLKQT 404 (436)
Q Consensus 333 ~~~~~l~~~~~~f-~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a----~~~~~~iv~vleGGY~~~~ 404 (436)
.|++.|..+.++| +|++|+|.++. =...||.+ ++.. +.+.+.. .+.+.|++.|-.+||.-..
T Consensus 73 ~L~~~I~~~~~~~~~p~~I~V~tTC~~eiIGDDi-------~~vv---~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs~ 140 (454)
T cd01973 73 RVEEGVLVLARRYPDLRVIPIITTCSTEIIGDDI-------EGVI---RKLNEALKEEFPDREVHLIPVHTPSFKGSM 140 (454)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCchHhhhccCH-------HHHH---HHHHhhhhhccCCCCCeEEEeeCCCcCCCH
Confidence 3556677788889 69987776654 34444422 2222 1111100 1125788888888888643
No 138
>PRK06749 replicative DNA helicase; Provisional
Probab=26.87 E-value=1.8e+02 Score=30.67 Aligned_cols=25 Identities=32% Similarity=0.204 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 371 PQGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 371 ~~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
.+.+.++++.|..+|+++++||+++
T Consensus 322 ~~ei~~isr~LK~lAkel~vpVi~l 346 (428)
T PRK06749 322 FQEISEISRKLKLLARELNVCVVAL 346 (428)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 4568889999999999999999887
No 139
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=26.61 E-value=2.2e+02 Score=27.83 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 334 ~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
+++++...+-.-+||++++ |.|+.. +...+-..+.++|.++.++ |.-|++|
T Consensus 145 ~QRV~lARAL~~~p~lllL--------DEP~~g--vD~~~~~~i~~lL~~l~~e-g~tIl~v 195 (254)
T COG1121 145 KQRVLLARALAQNPDLLLL--------DEPFTG--VDVAGQKEIYDLLKELRQE-GKTVLMV 195 (254)
T ss_pred HHHHHHHHHhccCCCEEEe--------cCCccc--CCHHHHHHHHHHHHHHHHC-CCEEEEE
Confidence 5666665566679999998 899987 5556666667777777666 4444444
No 140
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=26.59 E-value=3.8e+02 Score=23.21 Aligned_cols=14 Identities=0% Similarity=-0.138 Sum_probs=10.4
Q ss_pred HHHHhCCCEEEEec
Q psy8529 341 SLRSFCPDIIVYNA 354 (436)
Q Consensus 341 ~~~~f~Pdlivvsa 354 (436)
.+.+.+||+|.+|+
T Consensus 48 aa~e~~adii~iSs 61 (132)
T TIGR00640 48 QAVEADVHVVGVSS 61 (132)
T ss_pred HHHHcCCCEEEEcC
Confidence 34567999999864
No 141
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=26.34 E-value=5.2e+02 Score=26.17 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=38.5
Q ss_pred CeeEeeeCCCCCCchHHHHHHH--HHHHHHHHHh-CCCEEEEecCCCcCCCCCCC
Q psy8529 314 AIRCRIELAPYTEDQHYLEKIE--AGLERSLRSF-CPDIIVYNAGTDVLLNDPLG 365 (436)
Q Consensus 314 g~~~NvpL~~g~~d~~yl~~~~--~~l~~~~~~f-~PdlivvsaG~D~~~~Dplg 365 (436)
+...++|.|.-.+++++...|. +.+.++++.. +-|+++|..| |....+++-
T Consensus 172 ~~~~~l~aP~~~~s~e~r~~l~~e~~v~~vl~~~~~ad~alvGIG-~~~~~~~~~ 225 (321)
T COG2390 172 AESYLLPAPLVASSPELREALLQEPSVREVLDLARSADLALVGIG-SLSANSTLV 225 (321)
T ss_pred CcEEeeecCccCCCHHHHHHHHhCcHHHHHHHHHHhCCEEEEecC-CCcccchhh
Confidence 4456888888889999998875 4566666665 5899999999 677777743
No 142
>PRK04328 hypothetical protein; Provisional
Probab=26.27 E-value=2.1e+02 Score=27.42 Aligned_cols=55 Identities=9% Similarity=0.076 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCccc-CHHHHHHHHHHHHHHHHhcCCCEEEEeC
Q psy8529 334 IEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAI-SPQGIIRRDELVFMKARERRVPIVMLTS 397 (436)
Q Consensus 334 ~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~l-t~~~~~~~~~~l~~~a~~~~~~iv~vle 397 (436)
+...+...+++++|+.||+ |++..+.+ +++.+++....+..++++.++.++++.+
T Consensus 116 ~~~~i~~~i~~~~~~~vVI---------DSlt~l~~~~~~~~r~~~~~l~~~lk~~g~t~llt~e 171 (249)
T PRK04328 116 LIDVLRQAIKDIGAKRVVI---------DSVSTLYLTKPAMARSIVMQLKRVLSGLGCTAIFVSQ 171 (249)
T ss_pred HHHHHHHHHHhhCCCEEEE---------eChhHhhcCChHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 3344555678889998886 55554433 2334555555566777888998888754
No 143
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=26.16 E-value=77 Score=29.97 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=12.8
Q ss_pred ceEEEEeccCCCCC
Q psy8529 56 STAMIVDLDAHQFS 69 (436)
Q Consensus 56 ~rv~iiD~D~h~g~ 69 (436)
.||++||+|...||
T Consensus 31 ~~vlliD~D~~~~~ 44 (261)
T TIGR01968 31 KKVVLIDADIGLRN 44 (261)
T ss_pred CeEEEEECCCCCCC
Confidence 69999999998887
No 144
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=26.01 E-value=2.2e+02 Score=30.25 Aligned_cols=74 Identities=16% Similarity=0.181 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHh-CCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHH-HHHh---cCCCEEEEeCCCCCcchHH
Q psy8529 333 KIEAGLERSLRSF-CPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFM-KARE---RRVPIVMLTSGGYLKQTAR 406 (436)
Q Consensus 333 ~~~~~l~~~~~~f-~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~-~a~~---~~~~iv~vleGGY~~~~~~ 406 (436)
.|++.|..+.++| +|++|+|.++. =...||. ...+.+.+.. +.++ .+.|++.|-.+||.-....
T Consensus 76 kL~~aI~~~~~~~~~p~~I~V~ttC~~eiIGDD----------i~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~gs~~~ 145 (457)
T TIGR02932 76 RIEEGVLTLARRYPNLRVIPIITTCSTETIGDD----------IEGSIRKVNRALKKEFPDRKIKLVPVHTPSFKGSQVT 145 (457)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCchHHhhcCC----------HHHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcCcHHH
Confidence 3556666778888 69988885553 3344442 2222222111 1122 3679999999999975433
Q ss_pred HHHHHHHHHH
Q psy8529 407 IIADSILNLA 416 (436)
Q Consensus 407 ~~~~~v~~l~ 416 (436)
.....+.+++
T Consensus 146 G~~~a~~ali 155 (457)
T TIGR02932 146 GYAECVKSVI 155 (457)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 145
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=25.95 E-value=3.7e+02 Score=27.29 Aligned_cols=31 Identities=29% Similarity=0.422 Sum_probs=23.0
Q ss_pred hHHHH-HHHHHHHHHHHHhCCCEEEEecCCCc
Q psy8529 328 QHYLE-KIEAGLERSLRSFCPDIIVYNAGTDV 358 (436)
Q Consensus 328 ~~yl~-~~~~~l~~~~~~f~PdlivvsaG~D~ 358 (436)
++|.. .+...|.+++.+|+||+|-.-.|...
T Consensus 187 ~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~ 218 (346)
T PF01120_consen 187 QRYYNEYWLAQLRELLTRYKPDILWFDGGWPD 218 (346)
T ss_dssp HHHHHHHHHHHHHHHHHCSTESEEEEESTTSC
T ss_pred HhHhhhhhHHHHHHHHhCCCcceEEecCCCCc
Confidence 44544 67777888999999999987666544
No 146
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=25.88 E-value=2e+02 Score=24.23 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhCCCEEEEec
Q psy8529 335 EAGLERSLRSFCPDIIVYNA 354 (436)
Q Consensus 335 ~~~l~~~~~~f~Pdlivvsa 354 (436)
++.+..+.++++||+|.+|+
T Consensus 28 ~~~~~~~~~~~~pdiv~~S~ 47 (127)
T cd02068 28 DDIVEDIKELLKPDVVGISL 47 (127)
T ss_pred HHHHHHHHHhcCCCEEEEee
Confidence 34444443348999999873
No 147
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=25.84 E-value=2.9e+02 Score=28.87 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHh-CCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhc-CCCEEEEeCCCCCcc
Q psy8529 332 EKIEAGLERSLRSF-CPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARER-RVPIVMLTSGGYLKQ 403 (436)
Q Consensus 332 ~~~~~~l~~~~~~f-~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~-~~~iv~vleGGY~~~ 403 (436)
..+++.+..+++++ +|++|+|.+.. -...+|.+. +.. .++.++. +.|++.+-..||...
T Consensus 82 ~~L~~ai~ei~~~~~~P~~I~V~tTC~~e~IGDDi~-------~v~------~e~~~~~~~~pvv~v~t~Gf~g~ 143 (427)
T PRK02842 82 EELDRVVEELIKRRPNISVLFLVGSCPSEVIKLDLE-------GLA------ERLSTEFAGVPVLNYSGSGLETT 143 (427)
T ss_pred HHHHHHHHHHHhccCCCCEEEEECCChHHhhcCCHH-------HHH------HHhhcccCCCeEEEeeCCCcccc
Confidence 34566666666666 89999887764 444444322 111 1111223 667777777777653
No 148
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=25.60 E-value=2.9e+02 Score=32.23 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecC
Q psy8529 333 KIEAGLERSLRSFCPDIIVYNAG 355 (436)
Q Consensus 333 ~~~~~l~~~~~~f~PdlivvsaG 355 (436)
.|++.|..+.++|+|++|+|.++
T Consensus 558 ~L~~~I~~~~~~~~p~~I~V~tT 580 (917)
T PRK14477 558 NLKQGILRVIEKFKPKVIGVMTT 580 (917)
T ss_pred HHHHHHHHHHHhcCCCEEEEECC
Confidence 56667777888999998888665
No 149
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=25.56 E-value=2.6e+02 Score=28.35 Aligned_cols=49 Identities=22% Similarity=0.332 Sum_probs=34.1
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEe-CCCCCcch-------HHHHHHHHHHHHcc
Q psy8529 369 ISPQGIIRRDELVFMKARERRVPIVMLT-SGGYLKQT-------ARIIADSILNLADL 418 (436)
Q Consensus 369 lt~~~~~~~~~~l~~~a~~~~~~iv~vl-eGGY~~~~-------~~~~~~~v~~l~~~ 418 (436)
+++++|.+..++ +++|.++++|||.+. ..|+.+.. ++.++.++..+...
T Consensus 132 ~~peg~rKa~R~-m~lA~~f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~ 188 (319)
T PRK05724 132 PRPEGYRKALRL-MKMAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARL 188 (319)
T ss_pred CCHHHHHHHHHH-HHHHHHcCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCC
Confidence 778999998875 578999999998765 55655432 34556666655544
No 150
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=25.37 E-value=80 Score=29.74 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCC
Q psy8529 331 LEKIEAGLERSLRSFCPDIIVYNAGT 356 (436)
Q Consensus 331 l~~~~~~l~~~~~~f~PdlivvsaG~ 356 (436)
..+|++.|...+++++||+|++ |||
T Consensus 64 r~~~d~~l~~~l~~~~~dlvvL-AGy 88 (200)
T COG0299 64 REAFDRALVEALDEYGPDLVVL-AGY 88 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEEE-cch
Confidence 3557777778899999999886 664
No 151
>cd01826 acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase like subfamily of the SGNH-hydrolase family. Acyloxyacyl-hydrolase is a leukocyte-secreted enzyme that deacetylates bacterial lipopolysaccharides.
Probab=25.18 E-value=1.9e+02 Score=29.14 Aligned_cols=45 Identities=11% Similarity=0.061 Sum_probs=31.8
Q ss_pred hCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcC
Q psy8529 345 FCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERR 389 (436)
Q Consensus 345 f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~ 389 (436)
-.|.+|+|..|. |+..+..-..-.++++.|++-.+.+++..++..
T Consensus 121 ~~P~lVtI~lGgND~C~g~~d~~~~tp~eefr~NL~~~L~~Lr~~l 166 (305)
T cd01826 121 DKPALVIYSMIGNDVCNGPNDTINHTTPEEFYENVMEALKYLDTKL 166 (305)
T ss_pred CCCeEEEEEeccchhhcCCCccccCcCHHHHHHHHHHHHHHHHhcC
Confidence 469999998776 888773222225899999877666677777753
No 152
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=24.92 E-value=4.9e+02 Score=23.02 Aligned_cols=82 Identities=20% Similarity=0.295 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCC-CCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEe-------CCCCCc
Q psy8529 331 LEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDP-LGLLAISPQGIIRRDELVFMKARERRVPIVMLT-------SGGYLK 402 (436)
Q Consensus 331 l~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dp-lg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl-------eGGY~~ 402 (436)
+..+.+.|..++++|+||.+++ .++ ++...=|.--..+.-..++..+.+.++|+..+- --||..
T Consensus 44 l~~I~~~l~~~i~~~~Pd~vai--------E~~~~~~n~~s~~~l~~~~Gvi~~~~~~~~i~v~e~~P~~vKk~~tG~G~ 115 (154)
T cd00529 44 LKTIYDGLNEVIDQFQPDVVAI--------ERVFFAKNPDSALKLGQARGALILALANRNLPVFEYTPNQVKKAVTGYGK 115 (154)
T ss_pred HHHHHHHHHHHHHHhCCCEEEE--------EEhhcccChHHHHHHHHHHHHHHHHHHHcCCCEEEEccCeeEEEEECCCC
Confidence 4445556777999999999887 343 333211222233344455666666777766442 124444
Q ss_pred chHHHHHHHHHHHHccCC
Q psy8529 403 QTARIIADSILNLADLGL 420 (436)
Q Consensus 403 ~~~~~~~~~v~~l~~~~l 420 (436)
..=+.+...|..+++.+.
T Consensus 116 A~KeqV~~mv~~~l~~~~ 133 (154)
T cd00529 116 ADKDQVQHMVKRLLNLSE 133 (154)
T ss_pred CCHHHHHHHHHHHhCCCC
Confidence 332346678888887644
No 153
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=24.91 E-value=5e+02 Score=27.06 Aligned_cols=85 Identities=20% Similarity=0.180 Sum_probs=54.9
Q ss_pred hHHHHHHHHHH-------HHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy8529 328 QHYLEKIEAGL-------ERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400 (436)
Q Consensus 328 ~~yl~~~~~~l-------~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY 400 (436)
++....|+.+. ...+++|++|+|.+..= .+||.|. +=+++.|.+..+.+ +...+.|+++...|--
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~aD~Ialr~~----S~DP~~~-d~~~~e~a~~vk~V---~~av~vPLIL~gsg~~ 199 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFGADMVTIHLI----STDPKLD-DKSPSEAAKVLEDV---LQAVDVPIVIGGSGNP 199 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEEec----CCCcccc-ccCHHHHHHHHHHH---HHhCCCCEEEeCCCCC
Confidence 44555555544 12237899999988652 2555553 46788888776665 4445889966655544
Q ss_pred CcchHHHHHHHHHHHHc-cCCC
Q psy8529 401 LKQTARIIADSILNLAD-LGLI 421 (436)
Q Consensus 401 ~~~~~~~~~~~v~~l~~-~~l~ 421 (436)
..+ .+++......+.| ++|.
T Consensus 200 ~kD-~eVLeaaLe~~~G~kpLL 220 (389)
T TIGR00381 200 EKD-PLVLEKAAEVAEGERCLL 220 (389)
T ss_pred cCC-HHHHHHHHHHhCCCCcEE
Confidence 444 4778888888888 5776
No 154
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=24.90 E-value=1.9e+02 Score=30.22 Aligned_cols=57 Identities=16% Similarity=0.262 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCC-CEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy8529 333 KIEAGLERSLRSFCP-DIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402 (436)
Q Consensus 333 ~~~~~l~~~~~~f~P-dlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~ 402 (436)
.|++.|..+.++|+| ++|+|.+.. ....+|.+. +.. .++.++.+.|++.|--.||..
T Consensus 85 kL~~~I~~~~~~~~p~~~I~V~tTC~~~iIGdDi~-------~v~------~~~~~~~~~pvi~v~t~gf~g 143 (421)
T cd01976 85 KLAKAIDEAYELFPLNKGISVQSECPVGLIGDDIE-------AVA------RKASKELGIPVVPVRCEGFRG 143 (421)
T ss_pred HHHHHHHHHHHhCCCccEEEEECCChHHHhccCHH-------HHH------HHHHHhhCCCEEEEeCCCccC
Confidence 567777788899999 977776543 455555322 221 222334688999999888864
No 155
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=24.85 E-value=3.2e+02 Score=24.17 Aligned_cols=16 Identities=25% Similarity=0.491 Sum_probs=11.9
Q ss_pred HHHHHHHHhCCCEEEE
Q psy8529 337 GLERSLRSFCPDIIVY 352 (436)
Q Consensus 337 ~l~~~~~~f~Pdlivv 352 (436)
.+..++++++||+|++
T Consensus 29 ~~~~~i~~~~pd~vv~ 44 (156)
T cd08165 29 SFQTSLWLLQPDVVFV 44 (156)
T ss_pred HHHHHHHhcCCCEEEE
Confidence 3445677899998887
No 156
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=24.82 E-value=77 Score=30.48 Aligned_cols=13 Identities=8% Similarity=0.245 Sum_probs=11.2
Q ss_pred ceEEEEeccCCCCC
Q psy8529 56 STAMIVDLDAHQFS 69 (436)
Q Consensus 56 ~rv~iiD~D~h~g~ 69 (436)
+||++||+|. |||
T Consensus 29 ~rVLliD~D~-q~~ 41 (268)
T TIGR01281 29 KRVLQIGCDP-KHD 41 (268)
T ss_pred CeEEEEecCc-ccc
Confidence 6999999997 566
No 157
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=24.54 E-value=3.2e+02 Score=28.61 Aligned_cols=49 Identities=12% Similarity=0.054 Sum_probs=35.6
Q ss_pred chHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHH
Q psy8529 327 DQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFM 383 (436)
Q Consensus 327 d~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~ 383 (436)
.++...+|++++. .+.+.+||+||++ ||=+-.-.-|.+...++.+.+.+
T Consensus 24 ~~D~~~~f~eil~-~a~~~~vD~VLia-------GDLFd~~~Ps~~~~~~~~~~lr~ 72 (405)
T TIGR00583 24 GDDSWNTFEEVLQ-IAKEQDVDMILLG-------GDLFHENKPSRKSLYQVLRSLRL 72 (405)
T ss_pred hhhHHHHHHHHHH-HHHHcCCCEEEEC-------CccCCCCCCCHHHHHHHHHHHHH
Confidence 4677889999887 5678899999973 45444445567777777777765
No 158
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=24.53 E-value=23 Score=34.89 Aligned_cols=54 Identities=20% Similarity=0.370 Sum_probs=28.2
Q ss_pred HHHHHHHhCCCEEEEecCC---CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 338 LERSLRSFCPDIIVYNAGT---DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 338 l~~~~~~f~PdlivvsaG~---D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
+...+++++||+||..||+ |.-+.+|...+.+. ...++.|.+.|.+.+.|++.+
T Consensus 43 ~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a~~iN----~~~~~~la~~~~~~~~~li~~ 99 (286)
T PF04321_consen 43 VAKLLEAFKPDVVINCAAYTNVDACEKNPEEAYAIN----VDATKNLAEACKERGARLIHI 99 (286)
T ss_dssp HHHHHHHH--SEEEE------HHHHHHSHHHHHHHH----THHHHHHHHHHHHCT-EEEEE
T ss_pred HHHHHHHhCCCeEeccceeecHHhhhhChhhhHHHh----hHHHHHHHHHHHHcCCcEEEe
Confidence 4456678899999999986 33333432221111 145566777788889998765
No 159
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=24.34 E-value=1.5e+02 Score=24.35 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=13.9
Q ss_pred HHHHHHHhCCCEEEEecC
Q psy8529 338 LERSLRSFCPDIIVYNAG 355 (436)
Q Consensus 338 l~~~~~~f~PdlivvsaG 355 (436)
+...+.+++||+|.+|+-
T Consensus 43 l~~~~~~~~pd~V~iS~~ 60 (121)
T PF02310_consen 43 LVEALRAERPDVVGISVS 60 (121)
T ss_dssp HHHHHHHTTCSEEEEEES
T ss_pred HHHHHhcCCCcEEEEEcc
Confidence 334677889999999874
No 160
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=24.11 E-value=81 Score=30.35 Aligned_cols=13 Identities=8% Similarity=0.253 Sum_probs=11.2
Q ss_pred ceEEEEeccCCCCC
Q psy8529 56 STAMIVDLDAHQFS 69 (436)
Q Consensus 56 ~rv~iiD~D~h~g~ 69 (436)
+||++||+|. |||
T Consensus 29 ~rvlliD~Dp-q~~ 41 (267)
T cd02032 29 KKVLQIGCDP-KHD 41 (267)
T ss_pred CcEEEEecCC-CCC
Confidence 6999999997 566
No 161
>PRK09822 lipopolysaccharide core biosynthesis protein; Provisional
Probab=23.91 E-value=1.2e+02 Score=29.47 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=36.6
Q ss_pred CCCccccccccHHHHHHHHHhhCCCceEEE--EeccCCCCCccccCCcc
Q psy8529 31 TKGGGFCAYADISLLVKLLFQSKSISTAMI--VDLDAHQFSDYYFPSAH 77 (436)
Q Consensus 31 ~~~~GfC~~N~~a~a~~~~~~~~~~~rv~i--iD~D~h~g~f~~~~~v~ 77 (436)
|=..|||----||-.+.++.-..|.++|.+ +|++-|++-||++++-.
T Consensus 161 DI~~G~fDagTVaY~ALQIaY~LGF~~I~iaGLDMnNs~PRFYEt~~n~ 209 (269)
T PRK09822 161 DISIGYCSCHTIAYTAIQVAYSLKYGRIICSGLDLTGSCPRFYDESTSP 209 (269)
T ss_pred ccccCeeeccchHHHHHHHHHHcCCCEEEEEeeccCCCCCccccCCCCC
Confidence 445689999999998888888888899877 56666666699987544
No 162
>PRK10425 DNase TatD; Provisional
Probab=23.76 E-value=6.7e+02 Score=24.26 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=63.6
Q ss_pred ccHHHHHHHHHhcCCCeEEEEEecccccCccceeccccCCCEE-EEEecCCCCCCCCeeEeeeCCCCCCchHHHHHHHHH
Q psy8529 259 ADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIF-IMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAG 337 (436)
Q Consensus 259 NnvAIAa~~l~~~~g~~rV~IvD~D~HhGnGtq~if~~d~~V~-~~SiH~~~~~~~g~~~NvpL~~g~~d~~yl~~~~~~ 337 (436)
.|..-.++.+++. |+.+++++-.|...-.-+.++...-|.|+ .+-+|-.. ++ ...++.+..+++
T Consensus 15 ~d~~~vl~~a~~~-gv~~~i~~~~~~~~~~~~~~l~~~~~~v~~~~GiHP~~---------~~----~~~~~~~~~l~~- 79 (258)
T PRK10425 15 KDRDDVVARAFAA-GVNGMLITGTNLRESQQAQKLARQYPSCWSTAGVHPHD---------SS----QWQAATEEAIIE- 79 (258)
T ss_pred ccHHHHHHHHHHC-CCCEEEEeCCCHHHHHHHHHHHHhCCCEEEEEEeCcCc---------cc----cCCHHHHHHHHH-
Confidence 5666666667665 78999999999887666777776666655 34567211 00 011233333332
Q ss_pred HHHHHHHhCCCEEEEe-cCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEE
Q psy8529 338 LERSLRSFCPDIIVYN-AGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394 (436)
Q Consensus 338 l~~~~~~f~Pdlivvs-aG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~ 394 (436)
.++ +|.++-|- .|.|-+.... . .+--.++-+.-+++|++.+.|+++
T Consensus 80 ---~~~--~~~~vaIGEiGLDy~~~~~--~----~~~Q~~vF~~ql~lA~~~~~Pv~i 126 (258)
T PRK10425 80 ---LAA--QPEVVAIGECGLDFNRNFS--T----PEEQERAFVAQLAIAAELNMPVFM 126 (258)
T ss_pred ---hcc--CCCEEEEeeeeeccccCCC--C----HHHHHHHHHHHHHHHHHhCCCeEE
Confidence 222 36777664 8888764221 1 121224444566788888888864
No 163
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=23.73 E-value=2.1e+02 Score=28.00 Aligned_cols=82 Identities=13% Similarity=0.084 Sum_probs=45.0
Q ss_pred CCeEEEEEecccccCccceeccccCCCEEEEEec---CCCCCC-----C-C-eeEeeeCCCCCCchHHHHHHHH----HH
Q psy8529 273 SISTAMIVDLDAHQGNGYEKDFMNETRIFIMETC---ITSKAK-----E-A-IRCRIELAPYTEDQHYLEKIEA----GL 338 (436)
Q Consensus 273 g~~rV~IvD~D~HhGnGtq~if~~d~~V~~~SiH---~~~~~~-----~-g-~~~NvpL~~g~~d~~yl~~~~~----~l 338 (436)
+-+||++||.|.=-|| ...+|.-++.-.+ +| .+...- + . .++.+ ||.+.+-+++.....+ ++
T Consensus 31 ~~k~V~~iDaD~g~~n-L~~~~g~~~~~~~--l~dvL~~~~~~~Di~~~~~~~gl~v-ipg~~~~~~~~~~~~~~~~~~~ 106 (262)
T COG0455 31 GGKVVLLIDADLGLGN-LSLLLGVESKPTT--LHDVLAGEASIEDIIYETPQDGLYV-LPGGSGLEDLAKLDPEDLEDVI 106 (262)
T ss_pred CCCeEEEEecCCCCCc-HHHHhCCCCCccc--HHHHHhCCCCHhHeeeecCcCCEEE-eeCCCChHHHhhcCHHHHHHHH
Confidence 4678999999998875 3445554443333 44 110000 0 1 22222 5666666666654433 44
Q ss_pred HHHHHHhCCCEEEEecCCCcCC
Q psy8529 339 ERSLRSFCPDIIVYNAGTDVLL 360 (436)
Q Consensus 339 ~~~~~~f~PdlivvsaG~D~~~ 360 (436)
.. +++.. |+|++-+|.....
T Consensus 107 ~~-l~~~~-D~iliD~~aGl~~ 126 (262)
T COG0455 107 KE-LEELY-DYILIDTGAGLSR 126 (262)
T ss_pred HH-HHhcC-CEEEEeCCCCccH
Confidence 43 33333 9999998865543
No 164
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=23.67 E-value=1.9e+02 Score=23.04 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=14.1
Q ss_pred HHhcCCCEEEEeCCCCCc
Q psy8529 385 ARERRVPIVMLTSGGYLK 402 (436)
Q Consensus 385 a~~~~~~iv~vleGGY~~ 402 (436)
.++.|.+-|.+|.|||..
T Consensus 92 l~~~g~~~v~~l~GG~~~ 109 (113)
T PF00581_consen 92 LKKLGFKNVYILDGGFEA 109 (113)
T ss_dssp HHHTTTSSEEEETTHHHH
T ss_pred HHHcCCCCEEEecChHHH
Confidence 445688888999999973
No 165
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=23.36 E-value=1.8e+02 Score=27.63 Aligned_cols=36 Identities=19% Similarity=0.075 Sum_probs=28.2
Q ss_pred ccccccHHHHHHHHHhcCCCeEEEEEecccccCccce
Q psy8529 255 FCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYE 291 (436)
Q Consensus 255 FC~fNnvAIAa~~l~~~~g~~rV~IvD~D~HhGnGtq 291 (436)
.|+..|..-.|+++.+. |.+++.|+|+|..-|.+.+
T Consensus 32 ~~~~~dP~~~a~~~~~~-g~~~l~ivDLd~~~~~~~n 67 (221)
T TIGR00734 32 SRLSSSPDDAAKVIEEI-GARFIYIADLDRIVGLGDN 67 (221)
T ss_pred eecCCCHHHHHHHHHHc-CCCEEEEEEcccccCCcch
Confidence 58888877777767654 8999999999998765544
No 166
>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent
Probab=23.31 E-value=29 Score=26.37 Aligned_cols=13 Identities=31% Similarity=0.731 Sum_probs=8.9
Q ss_pred CCccccccccHHH
Q psy8529 32 KGGGFCAYADISL 44 (436)
Q Consensus 32 ~~~GfC~~N~~a~ 44 (436)
...=||+|||--+
T Consensus 14 ~nTKFcYyNNy~~ 26 (63)
T PF02701_consen 14 TNTKFCYYNNYNL 26 (63)
T ss_pred CCCEEEeecCCCC
Confidence 3356999998654
No 167
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=23.28 E-value=1.8e+02 Score=30.08 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=32.7
Q ss_pred HHHHhCCCEEEEecCCCcCCCCCCCCcc--------cCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 341 SLRSFCPDIIVYNAGTDVLLNDPLGLLA--------ISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 341 ~~~~f~PdlivvsaG~D~~~~Dplg~~~--------lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
.+++++|++||| |++..+. =+....+++...|.+++++.+++++++.
T Consensus 153 ~i~~~~~~lVVI---------DSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvg 207 (372)
T cd01121 153 SIEELKPDLVII---------DSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVG 207 (372)
T ss_pred HHHhcCCcEEEE---------cchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 457789999997 3332221 1234567777788899999999988874
No 168
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=23.17 E-value=72 Score=30.94 Aligned_cols=14 Identities=14% Similarity=0.339 Sum_probs=12.3
Q ss_pred eEEEEEecccccCc
Q psy8529 275 STAMIVDLDAHQGN 288 (436)
Q Consensus 275 ~rV~IvD~D~HhGn 288 (436)
+||++||+|.+..+
T Consensus 30 ~rVllvD~Dpq~~~ 43 (273)
T PRK13232 30 NKILLVGCDPKADS 43 (273)
T ss_pred CCeEEEeccccccc
Confidence 59999999999765
No 169
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=23.12 E-value=2.7e+02 Score=31.54 Aligned_cols=50 Identities=20% Similarity=0.317 Sum_probs=34.4
Q ss_pred ccCHHHHHHHHHHHHHHHHhcCCCEEEEe-CCCCCcc-------hHHHHHHHHHHHHcc
Q psy8529 368 AISPQGIIRRDELVFMKARERRVPIVMLT-SGGYLKQ-------TARIIADSILNLADL 418 (436)
Q Consensus 368 ~lt~~~~~~~~~~l~~~a~~~~~~iv~vl-eGGY~~~-------~~~~~~~~v~~l~~~ 418 (436)
.+++++|.+..++ +++|.++++|+|.+. .+|+.+. .++.++.++..+...
T Consensus 222 ~~~peGyRKAlRl-mkLAekfgLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl 279 (762)
T PLN03229 222 MPTPHGYRKALRM-MYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGL 279 (762)
T ss_pred CCCHHHHHHHHHH-HHHHHHcCCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCC
Confidence 4789999998875 578999999998765 4455442 134566666655443
No 170
>PRK06904 replicative DNA helicase; Validated
Probab=22.96 E-value=2.6e+02 Score=29.86 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 372 QGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 372 ~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
..+.++++.|..+|+++++||+++
T Consensus 357 ~ei~~isr~LK~lAkel~ipVi~l 380 (472)
T PRK06904 357 LEIAEISRSLKALAKELKVPVVAL 380 (472)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEE
Confidence 457889999999999999998877
No 171
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.78 E-value=5.1e+02 Score=22.55 Aligned_cols=90 Identities=13% Similarity=0.073 Sum_probs=44.7
Q ss_pred cCCCEEEEEecCCCCCCCCeeEeeeCCCCCCchHHHHHHHHHHHHHHHHh-CCCEEEEecCCCcCC-CCCCCCcccCHHH
Q psy8529 296 NETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSF-CPDIIVYNAGTDVLL-NDPLGLLAISPQG 373 (436)
Q Consensus 296 ~d~~V~~~SiH~~~~~~~g~~~NvpL~~g~~d~~yl~~~~~~l~~~~~~f-~PdlivvsaG~D~~~-~Dplg~~~lt~~~ 373 (436)
..|++.++.+ |.-....+.. ....-++|...+++++..+.+.. ...+|+++. +..-. .++.-......+.
T Consensus 60 ~~~d~v~l~~-G~ND~~~~~~------~~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~~p-~~~~~~~~~~~~~~~~~~~ 131 (191)
T cd01834 60 AKPDVVSIMF-GINDSFRGFD------DPVGLEKFKTNLRRLIDRLKNKESAPRIVLVSP-IAYEANEDPLPDGAEYNAN 131 (191)
T ss_pred CCCCEEEEEe-ecchHhhccc------ccccHHHHHHHHHHHHHHHHcccCCCcEEEECC-cccCCCCCCCCChHHHHHH
Confidence 4578888876 2211111110 23456889999998887543222 233444432 21111 1111001122344
Q ss_pred HHHHHHHHHHHHHhcCCCEE
Q psy8529 374 IIRRDELVFMKARERRVPIV 393 (436)
Q Consensus 374 ~~~~~~~l~~~a~~~~~~iv 393 (436)
..+..+.+.++|++.+.+++
T Consensus 132 ~~~~n~~l~~~a~~~~~~~i 151 (191)
T cd01834 132 LAAYADAVRELAAENGVAFV 151 (191)
T ss_pred HHHHHHHHHHHHHHcCCeEE
Confidence 55556677778887777665
No 172
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=22.73 E-value=2e+02 Score=33.42 Aligned_cols=57 Identities=14% Similarity=0.283 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecC-CCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy8529 333 KIEAGLERSLRSFCPDIIVYNAG-TDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402 (436)
Q Consensus 333 ~~~~~l~~~~~~f~PdlivvsaG-~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~ 402 (436)
.|++.|..+.++|+|++|+|.+. .....+|.+.. .. .++.++.+.|++.|--.||..
T Consensus 99 kL~~aI~~~~~~~~P~~I~V~tTC~~elIGDDi~~-------v~------~~~~~~~~~pvi~v~tpGF~g 156 (917)
T PRK14477 99 KLYRAILELAERYQPKAVFVYATCVTALTGDDVEA-------VC------KAAAEKVGIPVIPVNTPGFIG 156 (917)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCchHHHhccCHHH-------HH------HHHHHhhCCcEEEEECCCccC
Confidence 45566667788899998766544 36666663321 21 122233578999888888864
No 173
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=22.64 E-value=2.4e+02 Score=30.06 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhCC-CEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy8529 333 KIEAGLERSLRSFCP-DIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402 (436)
Q Consensus 333 ~~~~~l~~~~~~f~P-dlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~ 402 (436)
.|++.|..+.++|+| ++|+|.+.. ....+|.+. .+. .++.++.+.|++.+--.||.-
T Consensus 118 kL~~aI~e~~~~~~P~~~I~V~tTC~~~lIGDDi~-------av~------~~~~~~~~~pVi~v~t~gf~G 176 (466)
T TIGR01282 118 KLKKAIDEIEELFPLNKGISIQSECPVGLIGDDIE-------AVA------KKASKELGKPVVPVRCEGFRG 176 (466)
T ss_pred HHHHHHHHHHHhCCcccEEEEeCCChHHHhccCHH-------HHH------HHHhhhcCCcEEEEeCCCcCC
Confidence 467777788999999 887776553 555555322 222 223334689999999999974
No 174
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=22.45 E-value=89 Score=29.36 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=11.0
Q ss_pred ceEEEEeccCCCCC
Q psy8529 56 STAMIVDLDAHQFS 69 (436)
Q Consensus 56 ~rv~iiD~D~h~g~ 69 (436)
+||++||+|. ||+
T Consensus 31 ~~VlliD~D~-q~~ 43 (246)
T TIGR03371 31 EPVLAIDLDP-QNL 43 (246)
T ss_pred CcEEEEeCCC-cch
Confidence 6999999998 455
No 175
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=22.39 E-value=2.2e+02 Score=30.06 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhCC-CEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy8529 333 KIEAGLERSLRSFCP-DIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402 (436)
Q Consensus 333 ~~~~~l~~~~~~f~P-dlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~ 402 (436)
.|++.|..+.++++| ++|+|.... ....+|. +..+.+ ++.++.+.|++.|--.||..
T Consensus 104 ~L~~aI~~~~~~~~p~~~I~V~~tC~~~liGdD----------i~~v~~---~~~~~~~~pvi~v~t~gf~g 162 (443)
T TIGR01862 104 KLKKLIHEAFTEFPLIKAISVYATCPTGLIGDD----------IEAVAK---EVSKEIGKDVVAVNCPGFAG 162 (443)
T ss_pred HHHHHHHHHHHhCCccceEEEECCChHHHhccC----------HHHHHH---HHHHhcCCCEEEEecCCccC
Confidence 456667778889998 977765543 4444442 332222 22334578999998888875
No 176
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=22.32 E-value=56 Score=29.26 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=12.4
Q ss_pred eEEEEEecccccCc
Q psy8529 275 STAMIVDLDAHQGN 288 (436)
Q Consensus 275 ~rV~IvD~D~HhGn 288 (436)
+||++||.|...+|
T Consensus 25 ~~vlliD~D~~~~~ 38 (179)
T cd03110 25 KNVVLADCDVDAPN 38 (179)
T ss_pred hCcEEEECCCCCCc
Confidence 69999999999865
No 177
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=22.25 E-value=3.5e+02 Score=24.36 Aligned_cols=57 Identities=11% Similarity=0.138 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCEEEEecCCCcCCCCCCC-CcccCHHHHHHHHHHHHHHHHh-c----CCCEEEEeCCCC
Q psy8529 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLG-LLAISPQGIIRRDELVFMKARE-R----RVPIVMLTSGGY 400 (436)
Q Consensus 336 ~~l~~~~~~f~PdlivvsaG~D~~~~Dplg-~~~lt~~~~~~~~~~l~~~a~~-~----~~~iv~vleGGY 400 (436)
+.+..++.+.+||.||+. ||=+- ....+.+.+.+..+.+.++... . +.|+++|. |.-
T Consensus 35 ~~~~~~i~~~~pd~vi~l-------GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-GNH 97 (171)
T cd07384 35 RAFKTALQRLKPDVVLFL-------GDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVP-GNH 97 (171)
T ss_pred HHHHHHHHhcCCCEEEEe-------ccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEEC-Ccc
Confidence 344456678999999873 33221 1123344555555555454322 1 56666554 544
No 178
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=22.24 E-value=3.9e+02 Score=25.47 Aligned_cols=16 Identities=13% Similarity=0.322 Sum_probs=11.0
Q ss_pred CchHHHHHHHHHHHHH
Q psy8529 326 EDQHYLEKIEAGLERS 341 (436)
Q Consensus 326 ~d~~yl~~~~~~l~~~ 341 (436)
=+.+.+..|.+.+..+
T Consensus 23 l~~~~~~eL~~al~~~ 38 (239)
T PLN02267 23 LNPTLIDSIRSALRQV 38 (239)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3577777787777754
No 179
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=22.11 E-value=1.9e+02 Score=26.97 Aligned_cols=60 Identities=23% Similarity=0.350 Sum_probs=34.6
Q ss_pred chHHHHHHHHHHHHHHHHh--CCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy8529 327 DQHYLEKIEAGLERSLRSF--CPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYL 401 (436)
Q Consensus 327 d~~yl~~~~~~l~~~~~~f--~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~ 401 (436)
+.+....|++++.. +.+. +||+||+. | |...+ -+++.|..+.+ +.++.+.|++++. |--+
T Consensus 20 ~~~~~~~l~~~~~~-i~~~~~~~d~vi~~-G-Dl~~~-------~~~~~~~~~~~----~l~~~~~p~~~v~-GNHD 81 (240)
T cd07402 20 GVDTAASLEAVLAH-INALHPRPDLVLVT-G-DLTDD-------GSPESYERLRE----LLAALPIPVYLLP-GNHD 81 (240)
T ss_pred CcCHHHHHHHHHHH-HHhcCCCCCEEEEC-c-cCCCC-------CCHHHHHHHHH----HHhhcCCCEEEeC-CCCC
Confidence 45667778887764 5555 89988862 2 22211 13455554333 3344588987766 5444
No 180
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=21.95 E-value=5.3e+02 Score=23.87 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=48.1
Q ss_pred HHHHHHHHhCCCEEEEecCCCcCCCCCCCCccc--CHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcchHHHHHHHHHH
Q psy8529 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAI--SPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILN 414 (436)
Q Consensus 337 ~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~l--t~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~~~~~~~~~v~~ 414 (436)
.+.+.+.+++-|++++-.=-=....|.+-.+.- .-+.|. +.+.++.++.+.|.|.+-+-||......+ -+.|..
T Consensus 105 ~~~~~i~~~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~---~~l~~~L~~~~~~~v~i~~~~y~eR~~~~-~~aV~e 180 (187)
T COG3172 105 FLQALIAEYRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQ---NLLEQMLEENNIPFVVIEGEDYLERYLQA-VEAVEE 180 (187)
T ss_pred hHHHHHhhcccceEEEcCCCCceeCCCccccccHhHHHHHH---HHHHHHHHHhCCcEEEEcCCCHHHHHHHH-HHHHHH
Confidence 355678889999999876655555565554433 333444 34555666778888776544998765333 345555
Q ss_pred HHcc
Q psy8529 415 LADL 418 (436)
Q Consensus 415 l~~~ 418 (436)
|++.
T Consensus 181 ll~~ 184 (187)
T COG3172 181 LLGE 184 (187)
T ss_pred HHhc
Confidence 5554
No 181
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=21.92 E-value=2.1e+02 Score=30.06 Aligned_cols=63 Identities=21% Similarity=0.268 Sum_probs=47.8
Q ss_pred CcccCHHHHHHHHHHHHHHHHhcCCCEEEEe-CCC-----------CCcchHHHHHHHHHHHHcc---CCCCCCcccc
Q psy8529 366 LLAISPQGIIRRDELVFMKARERRVPIVMLT-SGG-----------YLKQTARIIADSILNLADL---GLISRPYNIW 428 (436)
Q Consensus 366 ~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl-eGG-----------Y~~~~~~~~~~~v~~l~~~---~l~~~~~~~~ 428 (436)
-+..|++.-.++++.+.+-.+++.+|+.+++ .|| |+++..+++-+.++.-+.+ ++..+|.|+-
T Consensus 309 lmRtt~eE~~~~g~~ia~kLn~~~gpv~v~lP~~G~S~~d~~G~~f~Dpead~al~~~l~~~l~~~~i~v~~~~~hIN 386 (403)
T PF06792_consen 309 LMRTTPEENRQLGEFIAEKLNRAKGPVRVLLPLGGVSALDRPGGPFYDPEADEALFDALRENLDGSGIEVIEVDAHIN 386 (403)
T ss_pred EeeCCHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCcccCCCCCcCcChhHHHHHHHHHHHhCCCCCcEEEECCCCCC
Confidence 4688999999999999888888889977654 777 4556667888888887766 4446676653
No 182
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=21.87 E-value=95 Score=30.17 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=13.6
Q ss_pred eEEEEEecccccCccceec
Q psy8529 275 STAMIVDLDAHQGNGYEKD 293 (436)
Q Consensus 275 ~rV~IvD~D~HhGnGtq~i 293 (436)
+||++||+|.. ||=|+..
T Consensus 30 ~rVLliD~Dpq-~n~t~~l 47 (279)
T PRK13230 30 KKVLVVGCDPK-ADCTRNL 47 (279)
T ss_pred CEEEEEeeCCc-ccccccc
Confidence 59999999995 5555543
No 183
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=21.80 E-value=2.9e+02 Score=27.82 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=14.4
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCc
Q psy8529 380 LVFMKARERRVPIVMLTSGGYLK 402 (436)
Q Consensus 380 ~l~~~a~~~~~~iv~vleGGY~~ 402 (436)
.+..+.++.|.. +.+|+|||.-
T Consensus 90 ~aa~~L~~~G~~-v~~L~GG~~a 111 (311)
T TIGR03167 90 SLAWLLAQIGFR-VPRLEGGYKA 111 (311)
T ss_pred HHHHHHHHcCCC-EEEecChHHH
Confidence 344455566775 6789999863
No 184
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=21.70 E-value=4.1e+02 Score=25.90 Aligned_cols=84 Identities=10% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCeEEEEEecc-----cccCcccee----ccccCCCEEEEEecCCCCCCCCeeEeeeCCCCCCchHHHH
Q psy8529 262 SLLVKLLFQSKSISTAMIVDLD-----AHQGNGYEK----DFMNETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLE 332 (436)
Q Consensus 262 AIAa~~l~~~~g~~rV~IvD~D-----~HhGnGtq~----if~~d~~V~~~SiH~~~~~~~g~~~NvpL~~g~~d~~yl~ 332 (436)
.||++|+.+..+.+.|-+|+.. ++-=+|... ||+++.+++.+=-+ ||+++..-.+
T Consensus 31 ~Ia~~~li~~l~m~~iG~i~s~~~PPv~vv~~G~~~~P~RIY~~~~~~~~~~~d------------v~I~p~~i~e---- 94 (244)
T COG1938 31 VIAGKHLIEELNMEEIGYIESKHIPPVAVVVEGRALPPFRIYASSDGVLALVSD------------VPIPPAVIYE---- 94 (244)
T ss_pred HHHHHHHHHHcCCeEEEEEEecCCCCEEEEeCCcccCceeEEecCCCEEEEEec------------CCCCHHHHHH----
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCcCCCC
Q psy8529 333 KIEAGLERSLRSFCPDIIVYNAGTDVLLND 362 (436)
Q Consensus 333 ~~~~~l~~~~~~f~PdlivvsaG~D~~~~D 362 (436)
|-+.|...+++.+...|+...|.+.....
T Consensus 95 -~s~~v~~w~~~~~v~~ii~~~g~~~~~~~ 123 (244)
T COG1938 95 -ISNAVVEWAEENGVEEVISLGGMPARLRE 123 (244)
T ss_pred -HHHHHHHHHHHcCCeEEEEecCCCccccc
No 185
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=21.70 E-value=1e+02 Score=30.67 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhCCCEEEE
Q psy8529 334 IEAGLERSLRSFCPDIIVY 352 (436)
Q Consensus 334 ~~~~l~~~~~~f~Pdlivv 352 (436)
+.+.|..++++++||+|+-
T Consensus 109 ~~~~L~~iIr~~~PdvVvT 127 (283)
T TIGR03446 109 AAEPLVRVIREFRPHVITT 127 (283)
T ss_pred HHHHHHHHHHHcCCEEEEe
Confidence 3345566889999998775
No 186
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=21.57 E-value=1.1e+02 Score=29.70 Aligned_cols=14 Identities=36% Similarity=0.328 Sum_probs=12.1
Q ss_pred ceEEEEeccCCCCC
Q psy8529 56 STAMIVDLDAHQFS 69 (436)
Q Consensus 56 ~rv~iiD~D~h~g~ 69 (436)
.||++||+|...++
T Consensus 29 ~~VlliD~D~q~~~ 42 (275)
T TIGR01287 29 KKVMIVGCDPKADS 42 (275)
T ss_pred CeEEEEeCCCCCCc
Confidence 69999999998655
No 187
>PRK05279 N-acetylglutamate synthase; Validated
Probab=21.56 E-value=2.9e+02 Score=28.94 Aligned_cols=64 Identities=5% Similarity=0.071 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcc
Q psy8529 328 QHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403 (436)
Q Consensus 328 ~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~ 403 (436)
.+|...|++.+. -+..|+=..+||-.|-.+..++ .+..+.+.+..+ .+.|.++|+|.+||+..+
T Consensus 7 ~~~~~~~~~~~~-~i~~~~~~~~VIk~GG~~l~~~----------~~~~~~~~i~~l-~~~g~~~VlVHGgg~~i~ 70 (441)
T PRK05279 7 TEFVDWFRHSAP-YINAHRGKTFVIMLGGEAIAHG----------NFSNIVHDIALL-HSLGIRLVLVHGARPQIE 70 (441)
T ss_pred hHHHHHHHHHhH-HHHHhCCCEEEEEECchhccCh----------hHHHHHHHHHHH-HHCCCeEEEECCCCHHHH
Confidence 468888988764 6788987899999987777533 133333334333 335789999999998754
No 188
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=21.51 E-value=4.6e+02 Score=27.32 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEe
Q psy8529 328 QHYLEKIEAGLERSLRSFCPDIIVYN 353 (436)
Q Consensus 328 ~~yl~~~~~~l~~~~~~f~Pdlivvs 353 (436)
++....++.++. .+.+.+||+||++
T Consensus 22 ~~~~~~l~~l~~-~i~~~~~D~viIa 46 (407)
T PRK10966 22 AEHQAFLDWLLE-QVQEHQVDAIIVA 46 (407)
T ss_pred HHHHHHHHHHHH-HHHhcCCCEEEEC
Confidence 345555655554 6788999999984
No 189
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=21.50 E-value=2.5e+02 Score=29.79 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=34.2
Q ss_pred HHHHHhCCCEEEEecCCCcCCCCCCCCccc--------CHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 340 RSLRSFCPDIIVYNAGTDVLLNDPLGLLAI--------SPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 340 ~~~~~f~PdlivvsaG~D~~~~Dplg~~~l--------t~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
..+++.+|++||| |++..+.. +...++++...|.++|++.+..++++.
T Consensus 164 ~~i~~~~~~~vVI---------DSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~ 219 (454)
T TIGR00416 164 ANIEEENPQACVI---------DSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVG 219 (454)
T ss_pred HHHHhcCCcEEEE---------ecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 3567899999997 33332221 234577778889999999999988873
No 190
>PRK07004 replicative DNA helicase; Provisional
Probab=21.43 E-value=1.9e+02 Score=30.66 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=31.1
Q ss_pred HHh-CCCEEEEecCCCcCCCCCCCCccc------CHHHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 343 RSF-CPDIIVYNAGTDVLLNDPLGLLAI------SPQGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 343 ~~f-~PdlivvsaG~D~~~~Dplg~~~l------t~~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
.++ ++++||| |.|+-+.- ..+.+.++++.|..+|+++++||+++
T Consensus 320 ~~~~~~~lviI---------DYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~l 370 (460)
T PRK07004 320 RQCGKLGLIII---------DYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIAL 370 (460)
T ss_pred HhCCCCCEEEE---------ChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 344 4788887 44433321 23457899999999999999998876
No 191
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=21.23 E-value=2.6e+02 Score=29.78 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=36.3
Q ss_pred HHHHHhCCCEEEEecCCCcCCCCCCCCc--ccCHHHHHHHHHHHHHHHHhcCCCEEEEeC
Q psy8529 340 RSLRSFCPDIIVYNAGTDVLLNDPLGLL--AISPQGIIRRDELVFMKARERRVPIVMLTS 397 (436)
Q Consensus 340 ~~~~~f~PdlivvsaG~D~~~~Dplg~~--~lt~~~~~~~~~~l~~~a~~~~~~iv~vle 397 (436)
..+++++|+.||+ |++..+ .++.+.+.++...|.+.+++.++.++++.+
T Consensus 347 ~~i~~~~~~~vvI---------Dsi~~~~~~~~~~~~r~~~~~l~~~lk~~~it~~~t~~ 397 (484)
T TIGR02655 347 SEIADFKPARIAI---------DSLSALARGVSNNAFRQFVIGVTGYAKQEEITGFFTNT 397 (484)
T ss_pred HHHHHcCCCEEEE---------cCHHHHHHhcCHHHHHHHHHHHHHHHhhCCCeEEEeec
Confidence 3567899999987 666633 356677777766678888889999888754
No 192
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=21.17 E-value=3.1e+02 Score=25.31 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=36.5
Q ss_pred chHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcc-----------cCHHHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 327 DQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLA-----------ISPQGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 327 d~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~-----------lt~~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
-++.+..+++++. ...+.++++||+ |++..+- -....+.++...|..+|++.++.++++
T Consensus 96 ~~~~~~~l~~~~~-~~~~~~~~lvVI---------Dsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t 165 (226)
T cd01393 96 GEQQLEIVEELER-IMSSGRVDLVVV---------DSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFT 165 (226)
T ss_pred HHHHHHHHHHHHH-HhhcCCeeEEEE---------cCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEE
Confidence 4566666665443 355778999887 4443321 011234555666778888889988775
Q ss_pred e
Q psy8529 396 T 396 (436)
Q Consensus 396 l 396 (436)
-
T Consensus 166 n 166 (226)
T cd01393 166 N 166 (226)
T ss_pred E
Confidence 3
No 193
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=21.08 E-value=66 Score=28.78 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=12.9
Q ss_pred ceEEEEeccCCCCC
Q psy8529 56 STAMIVDLDAHQFS 69 (436)
Q Consensus 56 ~rv~iiD~D~h~g~ 69 (436)
+||++||.|...+|
T Consensus 25 ~~vlliD~D~~~~~ 38 (179)
T cd03110 25 KNVVLADCDVDAPN 38 (179)
T ss_pred hCcEEEECCCCCCc
Confidence 59999999999988
No 194
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=21.06 E-value=1.8e+02 Score=28.41 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy8529 331 LEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402 (436)
Q Consensus 331 l~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~ 402 (436)
..++++.|..+.+++++|+||+.+ ..--|.+.+|.+-|.++- ++|+-++..+.-=|+.
T Consensus 12 r~~v~~~Lp~L~~~~~~DfVIaNg------ENaa~G~Git~~~~~~L~--------~~GvDviT~GNH~wdk 69 (253)
T PF13277_consen 12 RRAVKEHLPELKEEYGIDFVIANG------ENAAGGFGITPKIAEELF--------KAGVDVITMGNHIWDK 69 (253)
T ss_dssp HHHHHHHHHHHGG--G-SEEEEE-------TTTTTTSS--HHHHHHHH--------HHT-SEEE--TTTTSS
T ss_pred HHHHHHHHHHHHhhcCCCEEEECC------cccCCCCCCCHHHHHHHH--------hcCCCEEecCcccccC
Confidence 456778888888999999999865 333567889999998642 3488888877777764
No 195
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=21.03 E-value=1.3e+02 Score=28.67 Aligned_cols=49 Identities=24% Similarity=0.297 Sum_probs=34.7
Q ss_pred cCeEEEccCCCCCCCcCCCCCccccccHHHHHHHHHhcCCCeEEEEEecccc-cCcc
Q psy8529 234 RGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAH-QGNG 289 (436)
Q Consensus 234 ~g~a~~~~~G~HHA~~~~~~GFC~fNnvAIAa~~l~~~~g~~rV~IvD~D~H-hGnG 289 (436)
+|.++..-.| ++....|+..|..=.|+.+.+ .|.+++.|+|+|.= .|.+
T Consensus 10 ~G~~Vr~~~G------~~~~~~~~~~dP~~~a~~~~~-~g~~~l~ivDLdaa~~g~~ 59 (229)
T PF00977_consen 10 NGRVVRLVKG------DRFSETVYSGDPVEVAKAFNE-QGADELHIVDLDAAKEGRG 59 (229)
T ss_dssp TTEEEEESTT------CCSCEECECCCHHHHHHHHHH-TT-SEEEEEEHHHHCCTHH
T ss_pred CCEEEECCCe------ecceeeEECcCHHHHHHHHHH-cCCCEEEEEEccCcccCch
Confidence 5666655555 446678888888777777754 58999999999965 3555
No 196
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=20.98 E-value=1.1e+02 Score=30.49 Aligned_cols=14 Identities=14% Similarity=0.140 Sum_probs=12.8
Q ss_pred ceEEEEeccCCCCC
Q psy8529 56 STAMIVDLDAHQFS 69 (436)
Q Consensus 56 ~rv~iiD~D~h~g~ 69 (436)
+||++||+|...++
T Consensus 29 ~rVLlID~Dpq~~~ 42 (296)
T TIGR02016 29 KRVLQLGCDPKHDS 42 (296)
T ss_pred CeEEEEEecCCCCc
Confidence 69999999999877
No 197
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=20.90 E-value=1e+02 Score=27.50 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEE
Q psy8529 329 HYLEKIEAGLERSLRSFCPDIIVY 352 (436)
Q Consensus 329 ~yl~~~~~~l~~~~~~f~Pdlivv 352 (436)
-+...+.+-+.+.+++++||+||-
T Consensus 72 ~~~~~~~~~l~~~l~~~~PD~IIs 95 (169)
T PF06925_consen 72 ALSRLFARRLIRLLREFQPDLIIS 95 (169)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEE
Confidence 345556666777889999999984
No 198
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=20.74 E-value=1.2e+02 Score=26.70 Aligned_cols=17 Identities=18% Similarity=0.053 Sum_probs=14.1
Q ss_pred eEEEEEecccccCccce
Q psy8529 275 STAMIVDLDAHQGNGYE 291 (436)
Q Consensus 275 ~rV~IvD~D~HhGnGtq 291 (436)
+||++||.|...||-+.
T Consensus 29 ~~vllvD~D~~~~~~~~ 45 (179)
T cd02036 29 YKVVLIDADLGLRNLDL 45 (179)
T ss_pred CeEEEEeCCCCCCCchh
Confidence 69999999998876554
No 199
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=20.67 E-value=6.3e+02 Score=22.78 Aligned_cols=82 Identities=18% Similarity=0.256 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCccc-CHHHHHHHHHHHHHHHHhcCCCEEEEe-------CCCCCc
Q psy8529 331 LEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAI-SPQGIIRRDELVFMKARERRVPIVMLT-------SGGYLK 402 (436)
Q Consensus 331 l~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~l-t~~~~~~~~~~l~~~a~~~~~~iv~vl-------eGGY~~ 402 (436)
+..+.+-|..++++|+||.+++ .+++-.-|. |.--..+.--.+...+.+.++|+.-+- --||-.
T Consensus 46 l~~I~~~l~~~i~~~~Pd~vai--------E~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~~VKk~vtG~G~ 117 (164)
T PRK00039 46 LKQIYDGLSELIDEYQPDEVAI--------EEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPLQVKKAVVGYGR 117 (164)
T ss_pred HHHHHHHHHHHHHHhCCCEEEE--------ehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHhhhhhcCCCC
Confidence 4444455777999999999987 555433222 122222322334445566788876541 234443
Q ss_pred chHHHHHHHHHHHHccCC
Q psy8529 403 QTARIIADSILNLADLGL 420 (436)
Q Consensus 403 ~~~~~~~~~v~~l~~~~l 420 (436)
..=+.+...|..+++.+-
T Consensus 118 A~K~qV~~mv~~~l~l~~ 135 (164)
T PRK00039 118 ADKEQVQHMVKRLLNLPE 135 (164)
T ss_pred CCHHHHHHHHHHHhCCCC
Confidence 332346677777776543
No 200
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=20.64 E-value=3.4e+02 Score=27.93 Aligned_cols=102 Identities=22% Similarity=0.206 Sum_probs=59.8
Q ss_pred HHhcCCCeEEEEEecccccCccceeccccC---CCEEEEEecCCCCCCCCeeEeeeCCCCCCchHHHHHHHHHHHHHHHH
Q psy8529 268 LFQSKSISTAMIVDLDAHQGNGYEKDFMNE---TRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRS 344 (436)
Q Consensus 268 l~~~~g~~rV~IvD~D~HhGnGtq~if~~d---~~V~~~SiH~~~~~~~g~~~NvpL~~g~~d~~yl~~~~~~l~~~~~~ 344 (436)
+.+..+.++|++|--|--.|.+..+.|.+. ..+.+. ....++++.++..+.......+...+++
T Consensus 166 li~~~~w~~Vaii~~~d~yG~~~~~~f~~~~~~~GicIa-------------~~e~~~~~~~~~~~~~~~~~~~~~~ik~ 232 (403)
T cd06361 166 LIKKSGWNWVGIIITDDDYGRSALETFIIQAEANGVCIA-------------FKEILPASLSDNTKLNRIIRTTEKIIEE 232 (403)
T ss_pred HHHHcCCcEEEEEEecCchHHHHHHHHHHHHHHCCeEEE-------------EEEEecCccCcchhHHHHHHHHHHHHhc
Confidence 334458999999988888888887777432 222221 1223455544544443333344455677
Q ss_pred hCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy8529 345 FCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYL 401 (436)
Q Consensus 345 f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~ 401 (436)
-+|++||+.+- .. . ...+++-+++.|...+++...|..
T Consensus 233 ~~a~vVvv~~~---------------~~---~-~~~l~~~a~~~g~~~~wigs~~w~ 270 (403)
T cd06361 233 NKVNVIVVFAR---------------QF---H-VFLLFNKAIERNINKVWIASDNWS 270 (403)
T ss_pred CCCeEEEEEeC---------------hH---H-HHHHHHHHHHhCCCeEEEEECccc
Confidence 88999998443 11 1 223444556667777888766655
No 201
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=20.55 E-value=5.6e+02 Score=22.13 Aligned_cols=77 Identities=13% Similarity=0.100 Sum_probs=47.1
Q ss_pred CCCEEEEEecCCCCCCCCeeEeeeCCCCCCchHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHH
Q psy8529 297 ETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIR 376 (436)
Q Consensus 297 d~~V~~~SiH~~~~~~~g~~~NvpL~~g~~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~ 376 (436)
.|++.++.+= +-.. ..+.+.++|...+++++.. +++.++.+|+++.-.-. +....-..+
T Consensus 64 ~pd~v~i~~G-~ND~----------~~~~~~~~~~~~l~~li~~-~~~~~~~vil~~~~~~~---------~~~~~~~~~ 122 (177)
T cd01822 64 KPDLVILELG-GNDG----------LRGIPPDQTRANLRQMIET-AQARGAPVLLVGMQAPP---------NYGPRYTRR 122 (177)
T ss_pred CCCEEEEecc-Cccc----------ccCCCHHHHHHHHHHHHHH-HHHCCCeEEEEecCCCC---------ccchHHHHH
Confidence 6788888762 1111 1234567899999988875 55558888887532111 112233455
Q ss_pred HHHHHHHHHHhcCCCEEE
Q psy8529 377 RDELVFMKARERRVPIVM 394 (436)
Q Consensus 377 ~~~~l~~~a~~~~~~iv~ 394 (436)
..+.+.++|++.+.+++-
T Consensus 123 ~~~~~~~~a~~~~~~~~d 140 (177)
T cd01822 123 FAAIYPELAEEYGVPLVP 140 (177)
T ss_pred HHHHHHHHHHHcCCcEec
Confidence 666777788888887664
No 202
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=20.47 E-value=1.7e+02 Score=27.18 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCCC-----EEEEeCCCCCcch-HHHHHHHHHHHHccCCCCCCccccccccCC
Q psy8529 370 SPQGIIRRDELVFMKARERRVP-----IVMLTSGGYLKQT-ARIIADSILNLADLGLISRPYNIWFIYYTS 434 (436)
Q Consensus 370 t~~~~~~~~~~l~~~a~~~~~~-----iv~vleGGY~~~~-~~~~~~~v~~l~~~~l~~~~~~~~~~~~~~ 434 (436)
+.+-.....+..+++|++.+.+ .+....+||..+. ++.+.+.|...+.+.-++....++|--|.+
T Consensus 108 ~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~~~~~~~l~~I~fv~~~~ 178 (186)
T cd02904 108 CEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKQIYFVLFDS 178 (186)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCccEEEEEECCH
Confidence 4566677777788889887764 5555778888765 777778888877654333345666666554
No 203
>COG2755 TesA Lysophospholipase L1 and related esterases [Amino acid transport and metabolism]
Probab=20.39 E-value=4.1e+02 Score=24.14 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=28.5
Q ss_pred HHHHHhC-CCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcC
Q psy8529 340 RSLRSFC-PDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERR 389 (436)
Q Consensus 340 ~~~~~f~-PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~ 389 (436)
..+.... ||+|++..|. |.. |.....-..+.+....+.|.+..++.+
T Consensus 70 ~~l~~~~~~d~v~i~lG~ND~~---~~~~~~p~~~~~~~~~~~li~~~~~~~ 118 (216)
T COG2755 70 ALLKQHLPPDLVIIMLGGNDIG---PLRGFSPNAAEFTKNLRQLIQALRKAN 118 (216)
T ss_pred HHHhccCCCCEEEEEeeccccc---hhcccCccHHHHHHHHHHHHHHHHHhc
Confidence 3444555 9999999998 654 222222133666666666666666655
No 204
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=20.32 E-value=4.5e+02 Score=25.11 Aligned_cols=86 Identities=12% Similarity=0.077 Sum_probs=41.4
Q ss_pred CCCEEEEEecCCCCCCCCeeEeeeCCCCCCchHHHHHHHHHHHHHHHHhCCCEEEE-------ecCCCcCCCCCCCCccc
Q psy8529 297 ETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVY-------NAGTDVLLNDPLGLLAI 369 (436)
Q Consensus 297 d~~V~~~SiH~~~~~~~g~~~NvpL~~g~~d~~yl~~~~~~l~~~~~~f~Pdlivv-------saG~D~~~~Dplg~~~l 369 (436)
++.|.++.++. |=+.+.=+.+.+..+.+.+..+-..-....||+ |+|.|...- ....-
T Consensus 12 ~~~v~~i~lnr------------p~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~---~~~~~ 76 (259)
T PRK06688 12 EDGVLTITINR------------PDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDF---PKAPP 76 (259)
T ss_pred ECCEEEEEecC------------cccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHH---hccCc
Confidence 45577777652 111233467777888877775433233445665 455654321 00000
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeC
Q psy8529 370 SPQGIIRRDELVFMKARERRVPIVMLTS 397 (436)
Q Consensus 370 t~~~~~~~~~~l~~~a~~~~~~iv~vle 397 (436)
..+.+......++.....+..|+|+...
T Consensus 77 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~ 104 (259)
T PRK06688 77 KPPDELAPVNRFLRAIAALPKPVVAAVN 104 (259)
T ss_pred chHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 0012222222223333446889988765
No 205
>PRK12677 xylose isomerase; Provisional
Probab=20.15 E-value=9.7e+02 Score=24.75 Aligned_cols=77 Identities=13% Similarity=0.071 Sum_probs=39.9
Q ss_pred HHHHHHHhCCCEEEEecCCCcCCCCCC--CCcccCHHHHHH----HHHHHHHHHHhcCCCEEEEeCC--CCCc-------
Q psy8529 338 LERSLRSFCPDIIVYNAGTDVLLNDPL--GLLAISPQGIIR----RDELVFMKARERRVPIVMLTSG--GYLK------- 402 (436)
Q Consensus 338 l~~~~~~f~PdlivvsaG~D~~~~Dpl--g~~~lt~~~~~~----~~~~l~~~a~~~~~~iv~vleG--GY~~------- 402 (436)
+...+++..-.+..+...+ ..++++ |.+.-.....++ ..+..+++|.++|.|.|.+..| ||+.
T Consensus 72 lk~~l~~~GL~v~~v~~n~--f~~p~~~~g~lts~d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~ 149 (384)
T PRK12677 72 FKKALDETGLVVPMVTTNL--FTHPVFKDGAFTSNDRDVRRYALRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVR 149 (384)
T ss_pred HHHHHHHcCCeeEEEecCC--CCCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHH
Confidence 3346777776666655443 222222 222222232332 2455667889999998877644 3421
Q ss_pred chHHHHHHHHHHHH
Q psy8529 403 QTARIIADSILNLA 416 (436)
Q Consensus 403 ~~~~~~~~~v~~l~ 416 (436)
..++.+.+++..|+
T Consensus 150 ~a~~~~~eaL~~l~ 163 (384)
T PRK12677 150 AALDRYREAIDLLA 163 (384)
T ss_pred HHHHHHHHHHHHHH
Confidence 12444455555554
No 206
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=20.11 E-value=9.2e+02 Score=24.44 Aligned_cols=72 Identities=22% Similarity=0.277 Sum_probs=46.6
Q ss_pred HHHHHhCCCEEEEe-cCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcchHHHHHHHHHHHHcc
Q psy8529 340 RSLRSFCPDIIVYN-AGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADL 418 (436)
Q Consensus 340 ~~~~~f~Pdlivvs-aG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~~~~~~~~~v~~l~~~ 418 (436)
...++++.|+|-|. +|.|.-..| -+.+.+.++.+.+ +...+.|+++...|-=.++ .+++...+..+.|+
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d------~~~~e~~~~Vk~V---~eavd~PL~Id~s~n~~kD-~evleaale~~~g~ 152 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKD------KSPEEAAKTVEEV---LQAVDVPLIIGGSGNPEKD-AEVLEKVAEAAEGE 152 (319)
T ss_pred HHHHHhCCCEEEEECCCCCccccc------chHHHHHHHHHHH---HHhCCCCEEEecCCCCCCC-HHHHHHHHHHhCCC
Confidence 34468999999999 786654434 4567788766655 3446889984433322333 46777777777767
Q ss_pred -CCC
Q psy8529 419 -GLI 421 (436)
Q Consensus 419 -~l~ 421 (436)
+|.
T Consensus 153 ~pLI 156 (319)
T PRK04452 153 RCLL 156 (319)
T ss_pred CCEE
Confidence 444
Done!