Query psy8529
Match_columns 436
No_of_seqs 268 out of 2488
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 21:16:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8529.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8529hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3max_A HD2, histone deacetylas 100.0 1.9E-82 6.4E-87 638.2 31.0 312 108-435 2-334 (367)
2 4a69_A Histone deacetylase 3,; 100.0 1.7E-82 5.9E-87 641.6 29.8 311 109-435 3-335 (376)
3 3ew8_A HD8, histone deacetylas 100.0 2.3E-81 7.8E-86 633.1 29.3 316 102-435 7-343 (388)
4 1zz1_A Histone deacetylase-lik 100.0 1.9E-80 6.3E-85 627.6 31.2 307 110-432 2-345 (369)
5 1c3p_A Protein (HDLP (histone 100.0 1E-78 3.5E-83 616.1 28.9 302 109-425 2-324 (375)
6 2pqp_A HD7A, histone deacetyla 100.0 6E-77 2.1E-81 604.2 26.0 307 108-426 35-388 (421)
7 2vqm_A HD4, histone deacetylas 100.0 1.7E-76 5.9E-81 607.0 23.7 309 106-426 5-359 (413)
8 3q9b_A Acetylpolyamine amidohy 100.0 2.5E-75 8.5E-80 581.4 24.6 286 112-415 2-339 (341)
9 3men_A Acetylpolyamine aminohy 100.0 7.6E-75 2.6E-79 580.8 26.2 288 110-417 21-359 (362)
10 1c3p_A Protein (HDLP (histone 99.9 8.1E-24 2.8E-28 214.2 7.4 81 2-83 107-192 (375)
11 1zz1_A Histone deacetylase-lik 99.9 9E-24 3.1E-28 213.4 6.8 81 2-83 115-204 (369)
12 3max_A HD2, histone deacetylas 99.9 4.3E-23 1.5E-27 207.4 7.1 80 2-83 108-194 (367)
13 3ew8_A HD8, histone deacetylas 99.9 4.7E-23 1.6E-27 208.0 7.0 79 2-82 116-201 (388)
14 4a69_A Histone deacetylase 3,; 99.9 5.6E-23 1.9E-27 207.5 7.0 80 2-83 108-194 (376)
15 2pqp_A HD7A, histone deacetyla 99.9 6E-23 2.1E-27 208.6 6.2 81 2-83 160-249 (421)
16 3q9b_A Acetylpolyamine amidohy 99.9 6.5E-23 2.2E-27 204.2 6.0 80 2-83 132-219 (341)
17 2vqm_A HD4, histone deacetylas 99.9 2.6E-22 8.8E-27 205.7 6.3 81 2-83 131-220 (413)
18 3men_A Acetylpolyamine aminohy 99.9 2.3E-22 7.7E-27 201.4 5.7 79 2-83 151-237 (362)
19 1ivn_A Thioesterase I; hydrola 89.6 2.1 7.2E-05 37.1 10.1 49 340-395 56-105 (190)
20 3hp4_A GDSL-esterase; psychrot 88.4 1.7 5.9E-05 37.3 8.6 82 325-417 49-134 (185)
21 3bzw_A Putative lipase; protei 81.1 2.2 7.6E-05 39.7 6.1 67 327-395 71-166 (274)
22 4h08_A Putative hydrolase; GDS 80.2 11 0.00037 32.8 10.0 61 317-389 49-109 (200)
23 3p94_A GDSL-like lipase; serin 78.7 3.2 0.00011 36.1 5.9 70 318-396 51-121 (204)
24 3mil_A Isoamyl acetate-hydroly 77.6 6.4 0.00022 35.0 7.8 65 325-396 54-120 (240)
25 2q0q_A ARYL esterase; SGNH hyd 76.8 6.1 0.00021 34.6 7.3 52 340-396 76-138 (216)
26 4hf7_A Putative acylhydrolase; 74.9 6.4 0.00022 34.9 7.0 70 317-395 54-124 (209)
27 3rjt_A Lipolytic protein G-D-S 72.4 2.4 8.1E-05 37.1 3.3 55 341-395 78-136 (216)
28 1vjg_A Putative lipase from th 68.9 4.1 0.00014 36.1 4.1 68 325-396 67-136 (218)
29 1es9_A PAF-AH, platelet-activa 65.7 7.3 0.00025 34.9 5.2 45 342-395 89-136 (232)
30 3dci_A Arylesterase; SGNH_hydr 64.6 20 0.00068 32.0 8.0 52 340-396 94-154 (232)
31 2o14_A Hypothetical protein YX 64.5 12 0.0004 37.0 6.9 53 338-395 221-275 (375)
32 3mnf_A PAC2 family protein; PS 64.2 91 0.0031 28.9 13.4 153 262-421 23-211 (250)
33 1yzf_A Lipase/acylhydrolase; s 61.8 18 0.00061 30.6 6.8 61 325-396 50-111 (195)
34 3jug_A Beta-mannanase; TIM-bar 59.9 55 0.0019 31.9 10.7 69 329-404 117-188 (345)
35 1fxw_F Alpha2, platelet-activa 59.8 9.5 0.00033 34.1 4.8 58 326-395 77-137 (229)
36 3skv_A SSFX3; jelly roll, GDSL 54.9 26 0.00088 34.8 7.4 51 339-396 237-290 (385)
37 3dff_A Teicoplanin pseudoaglyc 51.8 15 0.00052 34.6 4.9 54 328-393 130-183 (273)
38 2q6t_A DNAB replication FORK h 51.8 30 0.001 34.7 7.4 52 336-396 300-360 (444)
39 2xdq_A Light-independent proto 51.6 43 0.0015 33.8 8.6 71 333-416 84-155 (460)
40 3dc7_A Putative uncharacterize 51.2 12 0.0004 33.3 3.9 52 345-396 81-136 (232)
41 4ep4_A Crossover junction endo 51.1 1.2E+02 0.0042 26.3 11.1 91 321-419 38-136 (166)
42 3dfi_A Pseudoaglycone deacetyl 49.2 18 0.00063 33.9 5.1 54 328-393 127-180 (270)
43 3bgw_A DNAB-like replicative h 48.1 41 0.0014 33.9 7.7 51 337-396 299-357 (444)
44 4a1f_A DNAB helicase, replicat 47.7 12 0.00043 36.5 3.7 55 333-396 142-203 (338)
45 1k7c_A Rhamnogalacturonan acet 47.7 25 0.00086 31.6 5.6 58 338-395 54-131 (233)
46 3bh0_A DNAB-like replicative h 46.5 27 0.00092 33.3 5.8 54 334-396 167-228 (315)
47 2hsj_A Putative platelet activ 45.8 18 0.0006 31.5 4.1 46 343-395 82-130 (214)
48 2q8u_A Exonuclease, putative; 45.1 77 0.0026 30.1 9.0 60 328-396 44-103 (336)
49 1q57_A DNA primase/helicase; d 43.9 40 0.0014 34.3 7.0 49 338-395 346-400 (503)
50 1ii7_A MRE11 nuclease; RAD50, 43.1 96 0.0033 29.4 9.3 62 328-399 23-84 (333)
51 3aek_B Light-independent proto 40.7 44 0.0015 34.6 6.7 68 333-415 72-140 (525)
52 3tho_B Exonuclease, putative; 38.0 1E+02 0.0035 30.0 8.7 60 327-396 25-85 (379)
53 2r6a_A DNAB helicase, replicat 36.8 59 0.002 32.6 6.8 53 336-397 303-362 (454)
54 4fzw_C 1,2-epoxyphenylacetyl-C 35.3 1.8E+02 0.0061 27.0 9.6 104 283-398 7-120 (274)
55 2w0m_A SSO2452; RECA, SSPF, un 35.3 49 0.0017 28.8 5.4 52 337-396 112-165 (235)
56 2vpt_A Lipolytic enzyme; ester 35.0 49 0.0017 28.9 5.3 48 325-381 66-114 (215)
57 1mio_B Nitrogenase molybdenum 34.0 96 0.0033 31.2 7.9 24 332-355 82-105 (458)
58 3e35_A Uncharacterized protein 32.4 2.7E+02 0.0094 26.8 10.5 152 261-421 45-233 (325)
59 2wao_A Endoglucanase E; plant 32.2 44 0.0015 32.0 4.8 48 343-396 210-260 (341)
60 2waa_A Acetyl esterase, xylan 31.9 32 0.0011 33.2 3.8 47 343-395 222-271 (347)
61 3av0_A DNA double-strand break 31.9 1.2E+02 0.0042 29.5 8.1 60 328-396 43-102 (386)
62 2xdq_B Light-independent proto 31.8 62 0.0021 33.2 6.1 58 334-404 76-134 (511)
63 2q02_A Putative cytoplasmic pr 31.8 2E+02 0.007 25.5 9.2 57 327-393 80-137 (272)
64 3ged_A Short-chain dehydrogena 31.1 2.1E+02 0.007 26.2 9.1 104 262-396 17-132 (247)
65 2dr3_A UPF0273 protein PH0284; 30.1 87 0.003 27.5 6.2 53 336-396 118-170 (247)
66 2p90_A Hypothetical protein CG 30.0 3.7E+02 0.013 25.6 12.1 150 262-421 43-230 (319)
67 3oc7_A Enoyl-COA hydratase; se 29.4 2.7E+02 0.0092 25.5 9.7 85 297-397 18-116 (267)
68 1vhx_A Putative holliday junct 29.2 74 0.0025 27.1 5.2 57 337-402 46-103 (150)
69 3q9l_A Septum site-determining 29.2 42 0.0014 30.2 3.9 14 56-69 32-45 (260)
70 1g3q_A MIND ATPase, cell divis 28.7 43 0.0015 29.7 3.8 14 56-69 32-45 (237)
71 1hyq_A MIND, cell division inh 28.7 42 0.0014 30.4 3.8 14 56-69 32-45 (263)
72 3ced_A Methionine import ATP-b 28.6 13 0.00045 29.4 0.2 54 335-392 34-92 (98)
73 2ej5_A Enoyl-COA hydratase sub 28.2 3E+02 0.01 25.0 9.7 71 324-398 25-103 (257)
74 3kjh_A CO dehydrogenase/acetyl 27.8 39 0.0013 30.0 3.4 24 332-356 118-141 (254)
75 3ea0_A ATPase, para family; al 27.7 45 0.0015 29.7 3.8 14 56-69 35-48 (245)
76 3t1i_A Double-strand break rep 27.5 1.4E+02 0.0048 30.0 7.8 51 327-385 53-103 (431)
77 1cr0_A DNA primase/helicase; R 27.4 95 0.0033 28.7 6.2 52 336-395 137-193 (296)
78 3kjh_A CO dehydrogenase/acetyl 27.3 42 0.0014 29.7 3.5 25 43-69 17-41 (254)
79 2qsw_A Methionine import ATP-b 26.8 6.7 0.00023 31.1 -1.8 57 336-392 38-94 (100)
80 2wam_A RV2714, conserved hypot 26.3 3.8E+02 0.013 26.1 10.3 152 262-421 83-270 (351)
81 3rcm_A TATD family hydrolase; 25.2 1.1E+02 0.0039 28.7 6.2 111 258-394 16-132 (287)
82 3pdi_B Nitrogenase MOFE cofact 25.1 98 0.0034 31.3 6.1 60 332-404 78-142 (458)
83 3u7q_A Nitrogenase molybdenum- 24.6 1.1E+02 0.0038 31.2 6.5 57 333-402 130-188 (492)
84 3pdi_A Nitrogenase MOFE cofact 24.3 74 0.0025 32.4 5.1 59 332-403 108-167 (483)
85 2buf_A Acetylglutamate kinase; 24.1 2.9E+02 0.01 25.8 9.0 62 328-400 8-69 (300)
86 4hwg_A UDP-N-acetylglucosamine 24.1 1.5E+02 0.0051 28.9 7.1 65 276-353 37-101 (385)
87 2xj4_A MIPZ; replication, cell 23.8 50 0.0017 30.7 3.4 14 56-69 34-47 (286)
88 2qrr_A Methionine import ATP-b 23.5 7.7 0.00026 30.8 -2.1 57 336-392 38-94 (101)
89 2whl_A Beta-mannanase, baman5; 23.1 2.6E+02 0.009 25.6 8.4 67 329-402 94-163 (294)
90 3l3s_A Enoyl-COA hydratase/iso 23.1 3.9E+02 0.013 24.4 9.5 74 324-397 28-112 (263)
91 4gkb_A 3-oxoacyl-[acyl-carrier 23.0 66 0.0022 29.8 4.0 106 262-396 22-139 (258)
92 2cvh_A DNA repair and recombin 22.7 1E+02 0.0035 26.6 5.1 46 346-396 105-153 (220)
93 3hrx_A Probable enoyl-COA hydr 22.7 4E+02 0.014 24.0 9.5 87 297-398 7-100 (254)
94 3d2m_A Putative acetylglutamat 22.5 1.3E+02 0.0045 29.9 6.5 70 319-400 15-85 (456)
95 2q02_A Putative cytoplasmic pr 22.5 2.8E+02 0.0094 24.6 8.3 67 340-415 58-125 (272)
96 3dhx_A Methionine import ATP-b 22.2 11 0.00037 30.3 -1.4 56 336-391 36-91 (106)
97 1wcv_1 SOJ, segregation protei 21.8 56 0.0019 29.6 3.3 13 56-69 36-48 (257)
98 1mio_A Nitrogenase molybdenum 21.8 1.6E+02 0.0055 30.4 7.0 57 333-402 121-178 (533)
99 3ib7_A ICC protein; metallopho 21.5 2.1E+02 0.0072 26.3 7.4 63 329-401 48-111 (330)
100 3la6_A Tyrosine-protein kinase 21.1 71 0.0024 30.0 3.9 14 56-69 122-135 (286)
101 2ixd_A LMBE-related protein; h 20.4 1.3E+02 0.0044 27.6 5.4 24 335-358 86-109 (242)
102 3pea_A Enoyl-COA hydratase/iso 20.3 4.6E+02 0.016 23.8 9.4 74 324-398 27-107 (261)
103 1hyq_A MIND, cell division inh 20.3 68 0.0023 28.9 3.5 14 275-288 32-45 (263)
104 2w9x_A AXE2A, CJCE2B, putative 20.2 1.2E+02 0.0042 29.2 5.6 53 344-396 234-293 (366)
105 1uan_A Hypothetical protein TT 20.2 95 0.0033 28.1 4.4 25 335-359 84-108 (227)
106 4fva_A 5'-tyrosyl-DNA phosphod 20.0 1.2E+02 0.0042 26.3 5.1 35 316-354 18-52 (256)
No 1
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.9e-82 Score=638.22 Aligned_cols=312 Identities=21% Similarity=0.365 Sum_probs=281.9
Q ss_pred CCceEEEEccccccccccCCCCCCCChHHHHHHHhhchhhHHHHHHhcCCCCCCeeeCCCCCCHHHHHhhcCHHHHHHHH
Q psy8529 108 TRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLK 187 (436)
Q Consensus 108 ~~~~~ivy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~~~~~~~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yi~~l~ 187 (436)
+.|++++|||+|+.|.++ .+|||+|+|++.+. ++|++.|+.+.+++++|++|+.++|++|||++||++|+
T Consensus 2 ~~~v~~~y~~~~~~~~~g--~~HPe~P~Rl~~i~--------~~L~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~ 71 (367)
T 3max_A 2 KKKVCYYYDGDIGNYYYG--QGHPMKPHRIRMTH--------NLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLR 71 (367)
T ss_dssp CCCEEEECCGGGGGCCCC--TTCSCCTHHHHHHH--------HHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHH
T ss_pred CCeEEEEECccccCcCCC--CCCCCCHHHHHHHH--------HHHHhcCCcccCeeeCCCCCCHHHHHhhCCHHHHHHHH
Confidence 468999999999999988 47999999999999 99999999999999999999999999999999999998
Q ss_pred hhhhhhhh---hccCCccccCCccccccchHHHHHHhccHHHHHHHhhh--cCeEEEccCCCCCCCcCCCCCccccccHH
Q psy8529 188 WSFNVAAI---SEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALR--RGWSINIGGGFHHASETKGGGFCAYADIS 262 (436)
Q Consensus 188 ~~~~~~~~---~e~~~~~~~~d~~v~~~t~~~a~~~~gg~~~aa~~~~~--~g~a~~~~~G~HHA~~~~~~GFC~fNnvA 262 (436)
+.+..... .+.....+++||++++++|+++++++||++.|++.+++ .++|++||||+|||++++++|||+|||||
T Consensus 72 ~~~~~~~~~~~~~~~~~~l~~Dtp~~~~~~e~a~~aaGgsl~aa~~v~~~~~~~Ai~~pgG~HHA~~~~a~GFC~~Ndva 151 (367)
T 3max_A 72 SIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIV 151 (367)
T ss_dssp HCCGGGGGGCHHHHHHTTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBCSCHHH
T ss_pred HhCccccchhhhHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCcceEecCCCCCCcCCcCCCCCchhhhHHH
Confidence 75432110 01112346789999999999999999999999998764 57999999999999999999999999999
Q ss_pred HHHHHHHhcCCCeEEEEEecccccCccceeccccCCCEEEEEecCCC--------------CCCCCeeEeeeCCCCCCch
Q psy8529 263 LLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITS--------------KAKEAIRCRIELAPYTEDQ 328 (436)
Q Consensus 263 IAa~~l~~~~g~~rV~IvD~D~HhGnGtq~if~~d~~V~~~SiH~~~--------------~~~~g~~~NvpL~~g~~d~ 328 (436)
|||++|++. .+||+|||||||||||||+|||+||+|+|+|+|+.+ +.++|+++|||||+|++|+
T Consensus 152 iAa~~l~~~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~fPgtg~~~e~G~g~g~g~~vNvPL~~g~~d~ 229 (367)
T 3max_A 152 LAILELLKY--HQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDE 229 (367)
T ss_dssp HHHHHHTTT--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSSCTTCCCCTTCCCCGGGTTCEEEEEECTTCCHH
T ss_pred HHHHHHHHc--CCcEEEEecCCCCCchhhHHhcCCCCEEEEecccCCCCCCCCCCccccCCCCCCceEEEEecCCCCCHH
Confidence 999999976 589999999999999999999999999999999431 1235689999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcch-HHH
Q psy8529 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT-ARI 407 (436)
Q Consensus 329 ~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~~-~~~ 407 (436)
+|+.+|+++|.|++++|+||+||||||||+|.+||||.|+||++||.++++.+ +++++|+++++||||++.+ +++
T Consensus 230 ~y~~~~~~~~~~~~~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~g~~~~~~~~----~~~~~p~v~~~eGGY~~~~var~ 305 (367)
T 3max_A 230 SYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVV----KTFNLPLLMLGGGGYTIRNVARC 305 (367)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCCBCHHHHHHHHHHH----HTTCCCEEEECCCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEECCccCcCCCCCCCeeeCHHHHHHHHHHH----HhcCCCEEEEeCCCCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999987765 4569999999999999875 999
Q ss_pred HHHHHHHHHccCCC-CCCccccccccCCC
Q psy8529 408 IADSILNLADLGLI-SRPYNIWFIYYTSK 435 (436)
Q Consensus 408 ~~~~v~~l~~~~l~-~~~~~~~~~~~~~~ 435 (436)
|+..+..++|.+++ .+|+|+||+||+|.
T Consensus 306 wt~~ta~~~~~~i~~~~p~~~~~~~~~p~ 334 (367)
T 3max_A 306 WTYETAVALDCEIPNELPYNDYFEYFGPD 334 (367)
T ss_dssp HHHHHHHHTTCCCCSBCCCCTTGGGGTTT
T ss_pred HHHHHHHHhhcccccCCCchhhHHhhCCC
Confidence 99999999999999 79999999999984
No 2
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.7e-82 Score=641.59 Aligned_cols=311 Identities=20% Similarity=0.328 Sum_probs=280.5
Q ss_pred CceEEEEccccccccccCCCCCCCChHHHHHHHhhchhhHHHHHHhcCCCCCCeeeCCCCCCHHHHHhhcCHHHHHHHHh
Q psy8529 109 RPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKW 188 (436)
Q Consensus 109 ~~~~ivy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~~~~~~~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yi~~l~~ 188 (436)
+|++++|||+|..|.++ .+|||+|+|++.++ ++|++.|+.+.+++++|++|++++|++|||++||++|++
T Consensus 3 ~~~~~~y~~~~~~~~~g--~~HPe~p~Rl~~i~--------~~l~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~ 72 (376)
T 4a69_A 3 KTVAYFYDPDVGNFHYG--AGHPMKPHRLALTH--------SLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQR 72 (376)
T ss_dssp CCEEEECCTTTTCCCCC--TTCSCCTHHHHHHH--------HHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHH
T ss_pred CeEEEEEChHHhCcCCC--CCCCcCHHHHHHHH--------HHHHhcCCCCCceEeCCCCCCHHHHHHhCCHHHHHHHHH
Confidence 58999999999999887 57999999999999 999999999999999999999999999999999999987
Q ss_pred hhhhhh---hhccCCccccCCccccccchHHHHHHhccHHHHHHHhhhc--CeEEEccCCCCCCCcCCCCCccccccHHH
Q psy8529 189 SFNVAA---ISEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRR--GWSINIGGGFHHASETKGGGFCAYADISL 263 (436)
Q Consensus 189 ~~~~~~---~~e~~~~~~~~d~~v~~~t~~~a~~~~gg~~~aa~~~~~~--g~a~~~~~G~HHA~~~~~~GFC~fNnvAI 263 (436)
.+.... ..+.....+++||++++++|+++++++||++.|+++++.. ++|++++||+|||++++++|||+||||||
T Consensus 73 ~~~~~~~~~~~~~~~~~l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~~~~A~~~~gG~HHA~~~~a~GFC~~NdvAi 152 (376)
T 4a69_A 73 VSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVI 152 (376)
T ss_dssp CCTTTGGGGHHHHHHHTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHH
T ss_pred hCcccchhhhhhhceeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCcceeeeCCCCCCcCCcCCCCcchhhhHHHH
Confidence 543211 0011123467899999999999999999999999986653 58999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEEecccccCccceeccccCCCEEEEEecCCC-----C----------CCCCeeEeeeCCCCCCch
Q psy8529 264 LVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITS-----K----------AKEAIRCRIELAPYTEDQ 328 (436)
Q Consensus 264 Aa~~l~~~~g~~rV~IvD~D~HhGnGtq~if~~d~~V~~~SiH~~~-----~----------~~~g~~~NvpL~~g~~d~ 328 (436)
||++|+++ .+||+|||||||||||||+|||+||+|+|+|+|+.+ + .++|+++|||||+|++|+
T Consensus 153 Aa~~l~~~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~D~ 230 (376)
T 4a69_A 153 GILELLKY--HPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQ 230 (376)
T ss_dssp HHHHHTTT--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCBHH
T ss_pred HHHHHHHh--CCcEEEEeccCCCCcchhhHhcCCCCEEEEecccCCCcCCCCCCCccccCCCCCCceeEeeecCCCCCHH
Confidence 99999986 489999999999999999999999999999999432 1 134689999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcch-HHH
Q psy8529 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT-ARI 407 (436)
Q Consensus 329 ~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~~-~~~ 407 (436)
+|+.+|+++|.|++++|+||+||||||||+|++||||.|+||+++|.++++.+ ++.++|+++++||||++.+ +++
T Consensus 231 ~yl~~~~~~l~p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~~g~~~~~~~l----~~~~~p~v~v~eGGY~~~~var~ 306 (376)
T 4a69_A 231 SYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYV----KSFNIPLLVLGGGGYTVRNVARC 306 (376)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCBBCHHHHHHHHHHH----HTTCCCEEEECCCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeCcccCCCCCcccCeecCHHHHHHHHHHH----HHcCCCEEEEECCCCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999988766 4458999999999999875 999
Q ss_pred HHHHHHHHHccCCC-CCCccccccccCCC
Q psy8529 408 IADSILNLADLGLI-SRPYNIWFIYYTSK 435 (436)
Q Consensus 408 ~~~~v~~l~~~~l~-~~~~~~~~~~~~~~ 435 (436)
|+..+..++|.+++ .+|+|+||+||+|.
T Consensus 307 w~~~~a~l~g~~~~~~~P~~~~~~~~~p~ 335 (376)
T 4a69_A 307 WTYETSLLVEEAISEELPYSEYFEYFAPD 335 (376)
T ss_dssp HHHHHHHHTTCCCCSBCCCCTTGGGGTTT
T ss_pred HHHHHHHhcCCCccCCCCCchHHHHhCCC
Confidence 99999999999998 89999999999985
No 3
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=100.00 E-value=2.3e-81 Score=633.09 Aligned_cols=316 Identities=21% Similarity=0.283 Sum_probs=279.3
Q ss_pred CcccccCCceEEEEccccccccccCCCCCCCChHHHHHHHhhchhhHHHHHHhcCCCCCCeeeCCCCCCHHHHHhhcCHH
Q psy8529 102 PQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEK 181 (436)
Q Consensus 102 ~~~~~~~~~~~ivy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~~~~~~~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~ 181 (436)
+....++.|++++|||+|+.|. .+|||+|+|++.+. ++|++.|+.+.+++++|++|+.++|++|||++
T Consensus 7 ~~~~~~~~~~~~~y~~~~~~~~----~~HPe~P~Rl~~i~--------~ll~~~gl~~~~~~~~p~~At~e~L~~vHs~~ 74 (388)
T 3ew8_A 7 PADSGQSLVPVYIYSPEYVSMC----DSLAKIPKRASMVH--------SLIEAYALHKQMRIVKPKVASMEEMATFHTDA 74 (388)
T ss_dssp -------CCCEEECCHHHHHHH----TTCTTSTTHHHHHH--------HHHHHTTGGGGSEEECCCCCCHHHHTTTSCHH
T ss_pred CcccCCCCcEEEEEChHHhccC----CCCCCCcHHHHHHH--------HHHHHcCCcccCeEeCCCCCCHHHHHhhCCHH
Confidence 3445667899999999999874 36999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhh--hccCCccccCCccccccchHHHHHHhccHHHHHHHhhhc--CeEEEccCCCCCCCcCCCCCccc
Q psy8529 182 YLKSLKWSFNVAAI--SEVCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALRR--GWSINIGGGFHHASETKGGGFCA 257 (436)
Q Consensus 182 Yi~~l~~~~~~~~~--~e~~~~~~~~d~~v~~~t~~~a~~~~gg~~~aa~~~~~~--g~a~~~~~G~HHA~~~~~~GFC~ 257 (436)
||++|++.+..... .+.....+..||++++++|+++++++||++.|++.+++. ++|+++|||+|||++++++|||+
T Consensus 75 Yi~~l~~~~~~~~~~~~~~~~~~lg~Dtp~~~~~~e~a~~aaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~ 154 (388)
T 3ew8_A 75 YLQHLQKVSQEGDDDHPDSIEYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCY 154 (388)
T ss_dssp HHHHHHHHHHHC--------CCSCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBS
T ss_pred HHHHHHHhcccccccchhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHcCCCceeeecCCcccceeecCCCCchh
Confidence 99999976433211 111223456799999999999999999999999998874 68999999999999999999999
Q ss_pred cccHHHHHHHHHhcCCCeEEEEEecccccCccceeccccCCCEEEEEecCCC---------------CCCCCeeEeeeCC
Q psy8529 258 YADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITS---------------KAKEAIRCRIELA 322 (436)
Q Consensus 258 fNnvAIAa~~l~~~~g~~rV~IvD~D~HhGnGtq~if~~d~~V~~~SiH~~~---------------~~~~g~~~NvpL~ 322 (436)
||||||||++|++. .+||+|||||||||||||+|||+||+|+|+|+|+.+ +.++|+++|||||
T Consensus 155 ~NdiaiAa~~l~~~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~ 232 (388)
T 3ew8_A 155 LNDAVLGILRLRRK--FERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQ 232 (388)
T ss_dssp SCHHHHHHHHHTTT--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCTTCTTCCCCTTCCCCGGGTTSEEEEEEC
T ss_pred hhHHHHHHHHHHhc--CCeEEEEecCCCCChhHHHHhccCCCEEEEecCCCCCCCCCCCCCcccccCCCCcceeeeccCC
Confidence 99999999999874 799999999999999999999999999999999421 1235789999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy8529 323 PYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402 (436)
Q Consensus 323 ~g~~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~ 402 (436)
+|++|++|+.+|+++|.|++++|+||+||||||||+|.+||||.|+||+++|.++++.|++ .++|+++++||||++
T Consensus 233 ~G~~d~~y~~~~~~~l~p~~~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~----~~~p~l~~~gGGY~~ 308 (388)
T 3ew8_A 233 DGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQ----WQLATLILGGGGYNL 308 (388)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHT----TCCEEEEECCCCCSH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccCCCCCCCCCCcCCHHHHHHHHHHHHh----cCCCEEEEECCCCCh
Confidence 9999999999999999999999999999999999999999999999999999999998754 489999999999998
Q ss_pred ch-HHHHHHHHHHHHccCCC-CCCccccccccCCC
Q psy8529 403 QT-ARIIADSILNLADLGLI-SRPYNIWFIYYTSK 435 (436)
Q Consensus 403 ~~-~~~~~~~v~~l~~~~l~-~~~~~~~~~~~~~~ 435 (436)
.+ +|+|+.++..|+|++++ .+|+|+||+||+|.
T Consensus 309 ~~var~w~~~~~~l~g~~l~~~lP~~~~~~~~~p~ 343 (388)
T 3ew8_A 309 ANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPD 343 (388)
T ss_dssp HHHHHHHHHHHHHHHTCCCCSBCCCCTTGGGGTTT
T ss_pred hHHHHHHHHHHHHHcCCCCCCCCCcccchhhcCCC
Confidence 75 99999999999999998 89999999999986
No 4
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=100.00 E-value=1.9e-80 Score=627.57 Aligned_cols=307 Identities=19% Similarity=0.263 Sum_probs=281.0
Q ss_pred ceEEEEccccccccccCCCC----------------CCCChHHHHHHHhhchhhHHHHHHhcCCCCCCeeeCCCCCCHHH
Q psy8529 110 PWPIVYRPEYNVHFFKLEKL----------------HPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQ 173 (436)
Q Consensus 110 ~~~ivy~~~~~~h~~~~~~~----------------Hpe~p~R~~~i~~~~~~~~~~~L~~~gl~~~~~~~~p~~a~~e~ 173 (436)
+|+++|||+|+.|.++. . |||+|+|++.++ +.|++.|+.+.+++++|+++++++
T Consensus 2 ~t~~~y~~~~~~h~~~~--~~~~~~~~g~~~~~~~~Hpe~p~R~~~i~--------~~l~~~gl~~~~~~~~p~~a~~~~ 71 (369)
T 1zz1_A 2 AIGYVWNTLYGWVDTGT--GSLAAANLTARMQPISHHLAHPDTKRRFH--------ELVCASGQIEHLTPIAAVAATDAD 71 (369)
T ss_dssp CEEEECCGGGGGCCCCS--SSSSCCBTTTTBCCCSSCTTCTHHHHHHH--------HHHHHTTGGGGSEECCCCCCCHHH
T ss_pred eEEEEEchHHcccCCCC--cccccccccccccccCCCCCCHHHHHHHH--------HHHHhcCCCccceEeCCCcCCHHH
Confidence 57999999999998873 4 999999999999 999999999889999999999999
Q ss_pred HHhhcCHHHHHHHHhhhhhhhhhccCCccccC-CccccccchHHHHHHhccHHHHHHHhhh----cCeEEEccCCCCCCC
Q psy8529 174 LLIAHTEKYLKSLKWSFNVAAISEVCPLVAVP-NYFVQKCYLRPMRYHVGGTLEAGFLALR----RGWSINIGGGFHHAS 248 (436)
Q Consensus 174 l~~vHs~~Yi~~l~~~~~~~~~~e~~~~~~~~-d~~v~~~t~~~a~~~~gg~~~aa~~~~~----~g~a~~~~~G~HHA~ 248 (436)
|++||+++||++|++.+.. .....++. ||++++++++++++++||++.|++.+++ +++|++|||| |||+
T Consensus 72 l~~vH~~~Yv~~l~~~~~~-----~~~~~l~~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~~~~afa~~rppG-HHA~ 145 (369)
T 1zz1_A 72 ILRAHSAAHLENMKRVSNL-----PTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPG-HHAP 145 (369)
T ss_dssp HHTTSCHHHHHHHHHHHHS-----TTCEECSSSSCEECTTTHHHHHHHHHHHHHHHHHHHTTSCSEEEECCSSCC-TTCC
T ss_pred HHHhccHHHHHHHHHhCcc-----ccceecCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEecCCc-cCcC
Confidence 9999999999999876431 11233567 9999999999999999999999999987 4689999999 9999
Q ss_pred cCCCCCccccccHHHHHHHHHhcCCCeEEEEEecccccCccceeccccCCCEEEEEecCC---C-CC----------CCC
Q psy8529 249 ETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCIT---S-KA----------KEA 314 (436)
Q Consensus 249 ~~~~~GFC~fNnvAIAa~~l~~~~g~~rV~IvD~D~HhGnGtq~if~~d~~V~~~SiH~~---~-~~----------~~g 314 (436)
+++++|||+|||+||||++|++++|++||+|||||||||||||+|||+||+|+|+|+|+. + +. ++|
T Consensus 146 ~~~a~GFC~fNnvAiAa~~l~~~~g~~RV~IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~~~~yP~~tG~~~e~G~g~g~g 225 (369)
T 1zz1_A 146 HNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHG 225 (369)
T ss_dssp TTCCBTTBSSCHHHHHHHHHHHTSCCSCEEEEECSSSCCHHHHHHTTTCTTEEEEEEEETTSSSTTCCCTTCCCCGGGTT
T ss_pred CCCCCCchHhhHHHHHHHHHHHhcCCCeEEEEecCCCCchhhhHHhcCCCCEEEEeccCCCCCCCCCCcccccCCCCCCc
Confidence 999999999999999999999998999999999999999999999999999999999943 2 21 247
Q ss_pred eeEeeeCCCCCCchHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHh-cCCCEE
Q psy8529 315 IRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARE-RRVPIV 393 (436)
Q Consensus 315 ~~~NvpL~~g~~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~-~~~~iv 393 (436)
+++|||||+|++|++|+.+|++++.|++++|+||+||||||||+|++||||.|+||+++|.+++++|+++|++ +++|++
T Consensus 226 ~~vNvPL~~g~~d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~~~~g~vv 305 (369)
T 1zz1_A 226 YNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIV 305 (369)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTTCCCBBCHHHHHHHHHHHHHHHHHHSTTCEE
T ss_pred eEEeeecCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988 899999
Q ss_pred EEeCCCCCcch-HHHHHHHHHHHHccCCCCCCcccccccc
Q psy8529 394 MLTSGGYLKQT-ARIIADSILNLADLGLISRPYNIWFIYY 432 (436)
Q Consensus 394 ~vleGGY~~~~-~~~~~~~v~~l~~~~l~~~~~~~~~~~~ 432 (436)
++|||||++++ +++++..+..|+|.+....|.+.+++-+
T Consensus 306 ~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~p~~~~~~~~ 345 (369)
T 1zz1_A 306 FVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGM 345 (369)
T ss_dssp EEECCCCCTTTHHHHHHHHHHHHHCCCCCCCTTHHHHHTT
T ss_pred EEECCCCCccHHHHHHHHHHHHHhCCCCCCCchhHHHhhc
Confidence 99999999884 8999999999999987777777776533
No 5
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=100.00 E-value=1e-78 Score=616.06 Aligned_cols=302 Identities=21% Similarity=0.291 Sum_probs=271.7
Q ss_pred CceEEEEccccccccccCCCCCCCChHHHHHHHhhchhhHHHHHHhcCCCCCCeeeCCCCCCHHHHHhhcCHHHHHHHHh
Q psy8529 109 RPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKSLKW 188 (436)
Q Consensus 109 ~~~~ivy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~~~~~~~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yi~~l~~ 188 (436)
.+|+++|||+|..|.++ ..|||+|+|++.++ ++|++.|+.+.+++++|++|++++|++||+++||++|++
T Consensus 2 ~~t~~vy~~~~~~h~~g--~~Hpe~p~R~~~i~--------~~l~~~gl~~~~~~~~p~~at~~~l~~vH~~~Yv~~l~~ 71 (375)
T 1c3p_A 2 KKVKLIGTLDYGKYRYP--KNHPLKIPRVSLLL--------RFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLME 71 (375)
T ss_dssp CCEEEEECGGGGGSCCC--TTCGGGSCCHHHHH--------HHHHHTTCCCGGGEEECCCCCHHHHTTTSCHHHHHHHHH
T ss_pred ceEEEEECHHHcCCCCC--CCCCCCHHHHHHHH--------HHHHhcCCCCCCeEeCCCCCCHHHHHHhCCHHHHHHHHH
Confidence 46899999999999876 57999999999999 999999999888999999999999999999999999987
Q ss_pred hhhhhh--hhccCCccc-cCCccccccchHHHHHHhccHHHHHHHhhhcCeEEEccCCCCCCCcCCCCCccccccHHHHH
Q psy8529 189 SFNVAA--ISEVCPLVA-VPNYFVQKCYLRPMRYHVGGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLV 265 (436)
Q Consensus 189 ~~~~~~--~~e~~~~~~-~~d~~v~~~t~~~a~~~~gg~~~aa~~~~~~g~a~~~~~G~HHA~~~~~~GFC~fNnvAIAa 265 (436)
.+.... ..+.....+ +.||++++++++++++++||++.|++++++.+.|+++|||+|||++++++|||+||||||||
T Consensus 72 ~~~~~~~~~~~~~~~~l~~~dtp~~~~~~~~a~~aaGg~l~aa~~v~~g~~a~~ppGG~HHA~~~~a~GFC~fNnvAiAa 151 (375)
T 1c3p_A 72 AERCQCVPKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFKSRANGFCYINNPAVGI 151 (375)
T ss_dssp HHHHTSCCTTHHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTCEEEETTCCCTTCBTTBCBTTBSSCHHHHHH
T ss_pred hccccCCChHHhhccccCCCCcccChhHHHHHHHHhhHHHHHHHHHHcCCceeecCcccceeeeccCCCceeecHHHHHH
Confidence 644210 001011223 68999999999999999999999999999888889988889999999999999999999999
Q ss_pred HHHHhcCCCeEEEEEecccccCccceeccccCCCEEEEEecCCC-----C---------C--CCCeeEeeeCCCCCCchH
Q psy8529 266 KLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITS-----K---------A--KEAIRCRIELAPYTEDQH 329 (436)
Q Consensus 266 ~~l~~~~g~~rV~IvD~D~HhGnGtq~if~~d~~V~~~SiH~~~-----~---------~--~~g~~~NvpL~~g~~d~~ 329 (436)
++|+++ |.+||+|||||||||||||+|||+||+|+|+|+|+.+ + . ++|+++|||||+|++|++
T Consensus 152 ~~l~~~-g~~RV~IvD~DvHHGnGtq~iF~~dp~Vl~~SiH~~~~~ffPgtG~~~e~G~~g~g~g~~vNvPL~~g~~D~~ 230 (375)
T 1c3p_A 152 EYLRKK-GFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNE 230 (375)
T ss_dssp HHHHHT-TCCCEEEEECSSSCCHHHHHHHTTCSSEEEEEEEECTTTSTTSSSCCTTCCCCGGGTTSEEEEEECTTCCHHH
T ss_pred HHHHHh-CCCeEEEEecCCCCCHHHHHHhccCCCEEEEecccCCCCCCCCCCCccccCCcCCCCceEEEEeCCCCCCHHH
Confidence 999987 7799999999999999999999999999999999431 1 1 346999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcch-HHHH
Q psy8529 330 YLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT-ARII 408 (436)
Q Consensus 330 yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~~-~~~~ 408 (436)
|+.+|+++|.|++++|+||+||||||||+|++||||.|+||+++|.+++++|++++ .|++++|||||++.. ++++
T Consensus 231 yl~a~~~~l~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a----~~vv~vleGGY~~~~l~~~~ 306 (375)
T 1c3p_A 231 FLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVF----GEGVYLGGGGYHPYALARAW 306 (375)
T ss_dssp HHHHHHHHHHHHHHHCCCSEEEEECCSTTBTTCTTCSCCBCHHHHHHHHHHHHHHH----CSCEEECCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHHhc----cceEEEECCCCChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998886 479999999999875 8999
Q ss_pred HHHHHHHHccCCC-CCCc
Q psy8529 409 ADSILNLADLGLI-SRPY 425 (436)
Q Consensus 409 ~~~v~~l~~~~l~-~~~~ 425 (436)
+..+..|+|++++ .+|+
T Consensus 307 ~~~~~~l~g~~~~~~lp~ 324 (375)
T 1c3p_A 307 TLIWCELSGREVPEKLNN 324 (375)
T ss_dssp HHHHHHHHTCCCCSSCCH
T ss_pred HHHHHHHcCCCCCccCCH
Confidence 9999999999987 5774
No 6
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=100.00 E-value=6e-77 Score=604.24 Aligned_cols=307 Identities=19% Similarity=0.257 Sum_probs=268.5
Q ss_pred CCceEEEEcccccccccc--CCCCCCCChHHHHHHHhhchhhHHHHHHhcCCCCCCeeeCCCCCCHHHHHhhcCHHHHHH
Q psy8529 108 TRPWPIVYRPEYNVHFFK--LEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKS 185 (436)
Q Consensus 108 ~~~~~ivy~~~~~~h~~~--~~~~Hpe~p~R~~~i~~~~~~~~~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yi~~ 185 (436)
+.+|++|||++|+.|.+. .+..|||+|+|++.|+ ++|++.|+.+.+++++|++|++|+|++||+++||+.
T Consensus 35 ~~~t~~vyd~~~l~H~~~~~~~~~HPE~P~Rl~~i~--------~~L~~~Gl~~~~~~~~p~~At~eeL~~vHs~~YI~~ 106 (421)
T 2pqp_A 35 PFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIW--------SRLQERGLRSQCECLRGRKASLEELQSVHSERHVLL 106 (421)
T ss_dssp TTCEEEECCGGGGGCCCTTCCTTSCSSCTHHHHHHH--------HHHHHTTCGGGSEEECCCCCCHHHHTTTSCHHHHHH
T ss_pred CCeEEEEECHHHHhhccCCCCCCCCCCCcHHHHHHH--------HHHHhcCCcccCeeeCCCCCCHHHHHhcCCHHHHHh
Confidence 357899999999999864 3468999999999999 999999999999999999999999999999999986
Q ss_pred HHhhh----hh-----hh-hh-------ccCCccccCCcccc-ccchHHHHHHhccHHHHHHHhhh----cCeEEEccCC
Q psy8529 186 LKWSF----NV-----AA-IS-------EVCPLVAVPNYFVQ-KCYLRPMRYHVGGTLEAGFLALR----RGWSINIGGG 243 (436)
Q Consensus 186 l~~~~----~~-----~~-~~-------e~~~~~~~~d~~v~-~~t~~~a~~~~gg~~~aa~~~~~----~g~a~~~~~G 243 (436)
+.... +. .. .. ..+...++.||+++ ..+|++|++++|+++.+++.++. +++|++||||
T Consensus 107 ~~~~~l~~~~~~~~~~~g~~~~~~~~~~p~gg~~~D~Dt~~~~~~s~~aa~~aaG~~~~a~~~v~~g~~~~afa~~rPpG 186 (421)
T 2pqp_A 107 YGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPG 186 (421)
T ss_dssp HHCCTTCSCCCCHHHHHHHHSCCCCEECTTSCEESSSSCEECTTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCSSCC
T ss_pred hhcchhhhhhhhcccccccchhhhhhhccccCcCCCCCcccCCccHHHHHHHHHhHHHHHHHHHHcCccccceeeCCCCC
Confidence 43210 00 00 00 01123357788887 48999999999999999998874 5799999999
Q ss_pred CCCCCcCCCCCccccccHHHHHHHHHhcCCCeEEEEEecccccCccceeccccCCCEEEEEecCC------CC-------
Q psy8529 244 FHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCIT------SK------- 310 (436)
Q Consensus 244 ~HHA~~~~~~GFC~fNnvAIAa~~l~~~~g~~rV~IvD~D~HhGnGtq~if~~d~~V~~~SiH~~------~~------- 310 (436)
|||++++++|||+||||||||++|+++++++||+|||||||||||||+|||+||+|+|+|+|+. ++
T Consensus 187 -HHA~~~~a~GFC~fNnvAiAa~~l~~~~~~~RV~ivD~DvHHGnGtq~iF~~dp~Vl~~S~H~~~~g~~yPgtG~~~e~ 265 (421)
T 2pqp_A 187 -HHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEV 265 (421)
T ss_dssp -TTCBTTBCBTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGTSTTCCCCTTCC
T ss_pred -CCCCCCCCCcchhhCHHHHHHHHHHHhcCCCeEEEEecCCCCChhHHHHhcCCCCEEEEecccCCCCCCCCCCCChhhc
Confidence 9999999999999999999999999998999999999999999999999999999999999952 11
Q ss_pred ---CCCCeeEeeeCCC----CCCchHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCC--CCCCcccCHHHHHHHHHHH
Q psy8529 311 ---AKEAIRCRIELAP----YTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLND--PLGLLAISPQGIIRRDELV 381 (436)
Q Consensus 311 ---~~~g~~~NvpL~~----g~~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~D--plg~~~lt~~~~~~~~~~l 381 (436)
.++|+++|||||. |++|++|+.+|+++|.|++++|+||+||||||||+|++| |||.|+||+++|.++++.|
T Consensus 266 G~g~g~g~~vNvPl~~gl~~g~~d~~yl~~~~~~l~p~~~~F~PdlIvvsaG~Da~~gD~dpLg~~~lt~~~y~~~~~~l 345 (421)
T 2pqp_A 266 GAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQL 345 (421)
T ss_dssp CCGGGTTCEEEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCCGGGCCCBBCHHHHHHHHHHH
T ss_pred cCCCCccceeccccCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCcccccccccccCCceeCHHHHHHHHHHH
Confidence 2357899999975 578999999999999999999999999999999999987 9999999999999999998
Q ss_pred HHHHHhcCCCEEEEeCCCCCcch-HHHHHHHHHHHHccCCCCCCcc
Q psy8529 382 FMKARERRVPIVMLTSGGYLKQT-ARIIADSILNLADLGLISRPYN 426 (436)
Q Consensus 382 ~~~a~~~~~~iv~vleGGY~~~~-~~~~~~~v~~l~~~~l~~~~~~ 426 (436)
+++| ++|+|++|||||++++ +++++.++.+|+|.++..+|+.
T Consensus 346 ~~~a---~grvv~vlEGGY~l~~l~~~~~a~~~~L~g~~~~~l~~~ 388 (421)
T 2pqp_A 346 MNLA---GGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEE 388 (421)
T ss_dssp TTSG---GGCEEEEECSCCCHHHHHHHHHHHHHHHTTCCCCGGGCG
T ss_pred HHHc---CCCEEEEECCCCChHHHHHHHHHHHHHHcCCCCCCCccc
Confidence 8765 8999999999999886 8899999999999988777654
No 7
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=100.00 E-value=1.7e-76 Score=607.03 Aligned_cols=309 Identities=21% Similarity=0.252 Sum_probs=266.1
Q ss_pred ccCCceEEEEccccccccccCC--CCCCCChHHHHHHHhhchhhHHHHHHhcCCCCCCeeeCCCCCCHHHHHhhcCHHHH
Q psy8529 106 VVTRPWPIVYRPEYNVHFFKLE--KLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183 (436)
Q Consensus 106 ~~~~~~~ivy~~~~~~h~~~~~--~~Hpe~p~R~~~i~~~~~~~~~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yi 183 (436)
.+.-+|++|||++|++|.+++. ..|||+|+|++.|+ ++|++.|+.+.+++++|++|+.++|++|||++||
T Consensus 5 ~p~~~Tg~vyd~~~l~H~~~~g~~~~HPE~P~Rl~~i~--------~~L~~~gl~~~~~~~~p~~At~eeL~~vHs~~Yv 76 (413)
T 2vqm_A 5 KPRFTTGLVYDTLMLKHQCTCGSSSSHPEHAGRIQSIW--------SRLQETGLRGKCECIRGRKATLEELQTVHSEAHT 76 (413)
T ss_dssp -CCSSEEEECCGGGCSCCCTTC-------CCCHHHHHH--------HHHHHHTHHHHSEEECCCCCCHHHHTTTSCHHHH
T ss_pred CCCCeEEEEEcHHHhccCCCCCCCCCCCCCHHHHHHHH--------HHHHhCCCCcCCeEeCCCCCCHHHHHHhCCHHHH
Confidence 3557899999999999998753 56999999999999 9999999999999999999999999999999999
Q ss_pred HHHHhhhhhh----------hhh------ccCCccccCCccccc-cchHHHHHHhccHHHHHHHhhh----cCeEEEccC
Q psy8529 184 KSLKWSFNVA----------AIS------EVCPLVAVPNYFVQK-CYLRPMRYHVGGTLEAGFLALR----RGWSINIGG 242 (436)
Q Consensus 184 ~~l~~~~~~~----------~~~------e~~~~~~~~d~~v~~-~t~~~a~~~~gg~~~aa~~~~~----~g~a~~~~~ 242 (436)
+.++...... ... ..+...++.|++++. .++++|++++|+++.+++.++. +++|++|||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dt~~~~~~s~~aA~laaG~~l~a~~~v~~g~~~~afa~vrpp 156 (413)
T 2vqm_A 77 LLYGTNPLNRQKLDSKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPP 156 (413)
T ss_dssp HHHHSCGGGGCC----HHHHHHHHHEEECTTSCEEECTTSTHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCCSC
T ss_pred HHHhcCchhhhHhhhhhhccchhhhhhccccCCcCccCCccccchhHHHHHHHHHHHHHHHHHHHhcCCccceeeecccc
Confidence 8876421110 000 112234567776654 7899999999999999998875 468888998
Q ss_pred CCCCCCcCCCCCccccccHHHHHHHHHhcCCCeEEEEEecccccCccceeccccCCCEEEEEecCC------C-------
Q psy8529 243 GFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCIT------S------- 309 (436)
Q Consensus 243 G~HHA~~~~~~GFC~fNnvAIAa~~l~~~~g~~rV~IvD~D~HhGnGtq~if~~d~~V~~~SiH~~------~------- 309 (436)
| |||++++++|||+||||||||++|+++++++||+|||||||||||||+|||+||+|+|+|+|+. +
T Consensus 157 G-HHA~~~~a~GFC~~Nnvaiaa~~~~~~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~f~pgtG~~~e 235 (413)
T 2vqm_A 157 G-HHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDE 235 (413)
T ss_dssp C-TTCBTTBCBTTBSSCHHHHHHHHHHHHSCCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGCSTTCCCCTTC
T ss_pred c-ccCcCCCCCCccccchHHHHHHHHHHhcCCCeEEEEecccCCCccHHHHHhcCcccccccchhccCCCCCCCCCCHHH
Confidence 8 9999999999999999999999999999999999999999999999999999999999999942 1
Q ss_pred ---CCCCCeeEeeeCC----CCCCchHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCC--CCCCCcccCHHHHHHHHHH
Q psy8529 310 ---KAKEAIRCRIELA----PYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLN--DPLGLLAISPQGIIRRDEL 380 (436)
Q Consensus 310 ---~~~~g~~~NvpL~----~g~~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~--Dplg~~~lt~~~~~~~~~~ 380 (436)
+.+.|+++|+||+ ++++|++|+.+|+++|.|++++|+||+||||||||+|++ ||+|.|+||+++|.+++++
T Consensus 236 ~G~g~g~g~~~n~pl~~g~~~~~~D~~y~~~~~~~v~p~~~~f~PdlivvsaG~Da~~~d~D~lg~~~lt~~~~~~~~~~ 315 (413)
T 2vqm_A 236 VGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQ 315 (413)
T ss_dssp CCSGGGTTCEEEEEECSCSSSCCCHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBSSCTTTTCCCCBCHHHHHHHHHH
T ss_pred cCCCcccccccccccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcCCCCCCCCCcccCHHHHHHHHHH
Confidence 1235789999987 468899999999999999999999999999999999999 6699999999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcch-HHHHHHHHHHHHccCCCCCCcc
Q psy8529 381 VFMKARERRVPIVMLTSGGYLKQT-ARIIADSILNLADLGLISRPYN 426 (436)
Q Consensus 381 l~~~a~~~~~~iv~vleGGY~~~~-~~~~~~~v~~l~~~~l~~~~~~ 426 (436)
|+++| ++|+|++|||||++++ +++++.++.+|+|.++.++|+.
T Consensus 316 l~~~a---~~~~v~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~p~~ 359 (413)
T 2vqm_A 316 LMGLA---GGRIVLALEGGHDLTAICDASEACVSALLGNELDPLPEK 359 (413)
T ss_dssp HHTSG---GGCEEEEECCCCCHHHHHHHHHHHHHHHTTCCCCCCCHH
T ss_pred HHHhc---CCCEEEEeCcCCChHHHHHHHHHHHHHHcCCCCCCCChh
Confidence 98776 7899999999999875 8999999999999998877764
No 8
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=100.00 E-value=2.5e-75 Score=581.36 Aligned_cols=286 Identities=18% Similarity=0.278 Sum_probs=248.6
Q ss_pred EEEEccccccccccCC------CCCCCChHHHHHHHhhchhhHHHHHHhcCCCCCCeeeCCCCCCHHHHHhhcCHHHHHH
Q psy8529 112 PIVYRPEYNVHFFKLE------KLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYLKS 185 (436)
Q Consensus 112 ~ivy~~~~~~h~~~~~------~~Hpe~p~R~~~i~~~~~~~~~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yi~~ 185 (436)
.++|+|+|+.|.++.. ..|||+|+|++.|+ ++|++.|+. ++++|+++++++|++|||++||++
T Consensus 2 ~~v~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~--------~~L~~~gl~---~~~~p~~at~e~L~~vHs~~Yi~~ 70 (341)
T 3q9b_A 2 RVIFSEDHKLRNAKTELYGGELVPPFEAPFRAEWIL--------AAVKEAGFD---DVVAPARHGLETVLKVHDAGYLNF 70 (341)
T ss_dssp EEECCGGGGGCCCSCEEETTEEECCSSCTHHHHHHH--------HHHHHTTCC---CEECCCCCCSTTGGGTSCHHHHHH
T ss_pred EEEECcHHhccCCcccccCCCcCCCCCChHHHHHHH--------HHHHhCCCC---ceeCCCCCCHHHHHHhCCHHHHHH
Confidence 5899999999997631 25999999999999 999999975 578999999999999999999999
Q ss_pred HHhhhhhhh--------hhc------------------cCCccccCCccccccchHHHHHHhccHHHHHHHhhh---cCe
Q psy8529 186 LKWSFNVAA--------ISE------------------VCPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALR---RGW 236 (436)
Q Consensus 186 l~~~~~~~~--------~~e------------------~~~~~~~~d~~v~~~t~~~a~~~~gg~~~aa~~~~~---~g~ 236 (436)
|++.+.... .++ .+...+++||++++++|+++++++|+++.|++.+++ +++
T Consensus 71 l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~g~~~~d~dt~~~~~~~~aa~~aaG~~l~a~~~v~~g~~~af 150 (341)
T 3q9b_A 71 LETAWDRWKAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLIAAGHKAAF 150 (341)
T ss_dssp HHHHHHHHHHTTCSSCBCCCBCCCTTCCCCCCSSHHHHHHHTBSBTTCCBCTTHHHHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHhhhhhhhcccccccccccccccccccccccchhcccceeccCCCCCcChhHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence 997643200 000 011346789999999999999999999999999886 468
Q ss_pred EEEccCCCCCCCcCCCCCccccccHHHHHHHHHhcCCCeEEEEEecccccCccceeccccCCCEEEEEecCCC-----C-
Q psy8529 237 SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITS-----K- 310 (436)
Q Consensus 237 a~~~~~G~HHA~~~~~~GFC~fNnvAIAa~~l~~~~g~~rV~IvD~D~HhGnGtq~if~~d~~V~~~SiH~~~-----~- 310 (436)
|++|||| |||++++++|||+|||+||||++|+++ |.+||+|||||||||||||+|||+||+|+|+|+|+++ +
T Consensus 151 al~rppG-HHA~~~~a~GFC~~NnvaiAa~~l~~~-g~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~ 228 (341)
T 3q9b_A 151 SLCRPPG-HHAGIDMFGGYCFINNAAVAAQRLLDK-GAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHF 228 (341)
T ss_dssp ECCSSCC-TTCBTTBBBTTBSSCHHHHHHHHHHHT-TCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGSTTCS
T ss_pred ecCCCCC-CCCCCCCCCCccccCHHHHHHHHHHHc-CCCeEEEEecCCCCCcchhHHhcCCCCEEEEeccCCCccCCCCC
Confidence 9999999 999999999999999999999999986 7999999999999999999999999999999999531 1
Q ss_pred ----------CCCCeeEeeeCCCCCCchHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHH
Q psy8529 311 ----------AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDEL 380 (436)
Q Consensus 311 ----------~~~g~~~NvpL~~g~~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~ 380 (436)
.++|+++|||||+|++|++|+.+|+++| |.+++|+||+||||||||+|++||+|.|+||+++|.++++.
T Consensus 229 tG~~~e~G~g~g~g~~vNvpL~~g~~d~~y~~~~~~~l-~~l~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~ 307 (341)
T 3q9b_A 229 LGYAEETGKGAGAGTTANYPMGRGTPYSVWGEALTDSL-KRIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRT 307 (341)
T ss_dssp SCCTTCCCCGGGTTCEEEEEECTTCBHHHHHHHHHHHH-HHHHHHTCSCEEEEECCTTBTTCTTCCCBBCTTHHHHHHHH
T ss_pred CCcccccCCCCCCceeEeeecCCCCChHHHHHHHHHHH-HHHHhhCCCEEEEeCCccccCCCCCCCccCCHHHHHHHHHH
Confidence 1257899999999999999999999976 57899999999999999999999999999999999998887
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcch-HHHHHHHHHHH
Q psy8529 381 VFMKARERRVPIVMLTSGGYLKQT-ARIIADSILNL 415 (436)
Q Consensus 381 l~~~a~~~~~~iv~vleGGY~~~~-~~~~~~~v~~l 415 (436)
+.+ .++|++++|||||++++ ++++...+..|
T Consensus 308 l~~----~~~~~v~vleGGY~~~~l~~~~~~~l~g~ 339 (341)
T 3q9b_A 308 IAA----SGVPLLVVMEGGYGVPEIGLNVANVLKGV 339 (341)
T ss_dssp HHT----TSSCEEEEECCCCCCTTHHHHHHHHHHHH
T ss_pred HHH----hCCCEEEEECCCCChHHHHHHHHHHHHHh
Confidence 754 47899999999999986 55555555444
No 9
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=7.6e-75 Score=580.81 Aligned_cols=288 Identities=19% Similarity=0.309 Sum_probs=249.9
Q ss_pred ceEEEEccccccccccCC------CCCCCChHHHHHHHhhchhhHHHHHHhcCCCCCCeeeCCCCCCHHHHHhhcCHHHH
Q psy8529 110 PWPIVYRPEYNVHFFKLE------KLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183 (436)
Q Consensus 110 ~~~ivy~~~~~~h~~~~~------~~Hpe~p~R~~~i~~~~~~~~~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yi 183 (436)
.+.++|+|+|+.|.++.. ..|||+|+|++.|+ ++|++.|+ ++++|+++++++|++|||++||
T Consensus 21 ~M~~~~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~--------~~L~~~gl----~~~~p~~At~e~L~~vHs~~YI 88 (362)
T 3men_A 21 SMLTYFHPDQSLHHPRTYFSRGRMRMPQEVPERAARLV--------AAAFAMGF----PVREPDDFGIAPIAAVHDTHYL 88 (362)
T ss_dssp CCEEECCGGGGGCCCCCEEETTEEECCCSCTHHHHHHH--------HHHHHTTC----CEECCCCCCSHHHHTTSCHHHH
T ss_pred ceEEEEChHHHhhCCccccccCCcCCCCCChHHHHHHH--------HHHHhCCC----eEeCCCCCCHHHHHHhCCHHHH
Confidence 357999999999997631 36999999999999 99999996 6899999999999999999999
Q ss_pred HHHHhhhhhhh------hhcc-------------------CCccccCCccccccchHHHHHHhccHHHHHHHhhh---cC
Q psy8529 184 KSLKWSFNVAA------ISEV-------------------CPLVAVPNYFVQKCYLRPMRYHVGGTLEAGFLALR---RG 235 (436)
Q Consensus 184 ~~l~~~~~~~~------~~e~-------------------~~~~~~~d~~v~~~t~~~a~~~~gg~~~aa~~~~~---~g 235 (436)
++|++.+.... ..+. +...+++||++++++|++|++++|+++.|++.+++ ++
T Consensus 89 ~~l~~~~~~~~~~~~~~~~e~~p~~~p~~~~~p~~~~~~~g~~~~d~Dtpv~~~~~~aa~~aaG~~l~aa~~v~~g~~~a 168 (362)
T 3men_A 89 RFLETVHREWKAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAA 168 (362)
T ss_dssp HHHHHHHHHHHTSCGGGCSSBCCCBCCCSSCCCCSHHHHHHHHBCBTTCCBCTTHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHhhhhhhhcccccccccccccccccccccccccccccccccCCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCce
Confidence 99987642110 0000 01236789999999999999999999999999886 46
Q ss_pred eEEEccCCCCCCCcCCCCCccccccHHHHHHHHHhcCCCeEEEEEecccccCccceeccccCCCEEEEEecCCC-----C
Q psy8529 236 WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITS-----K 310 (436)
Q Consensus 236 ~a~~~~~G~HHA~~~~~~GFC~fNnvAIAa~~l~~~~g~~rV~IvD~D~HhGnGtq~if~~d~~V~~~SiH~~~-----~ 310 (436)
+|++|||| |||++++++|||+||||||||++|+++ .+||+|||||||||||||+|||+||+|+|+|+|+++ +
T Consensus 169 fal~rPpG-HHA~~~~a~GFC~fNnvAiAa~~l~~~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~ 245 (362)
T 3men_A 169 YALCRPPG-HHARVDAAGGFCYLNNAAIAAQALRAR--HARVAVLDTDMHHGQGIQEIFYARRDVLYVSIHGDPTNFYPA 245 (362)
T ss_dssp EECCSSCC-TTCBTTBBBTTBSSCHHHHHHHHHTTT--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCTTSTTC
T ss_pred EEeCCCCC-CCCCCCCCCCccccCHHHHHHHHHHHc--CCeEEEEeCcCCCchhHhHHhcCCCCEEEEEecCCCccCCCC
Confidence 89999998 999999999999999999999999987 699999999999999999999999999999999531 1
Q ss_pred -----------CCCCeeEeeeCCCCCCchHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHH
Q psy8529 311 -----------AKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDE 379 (436)
Q Consensus 311 -----------~~~g~~~NvpL~~g~~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~ 379 (436)
.++|+++|||||+|++|++|+.+|+++| |.+++|+||+||||||||+|++||+|.|+||+++|.++++
T Consensus 246 ~tG~~~e~G~g~g~g~~vNvPL~~g~~d~~yl~~~~~~l-~~l~~f~PdlIvvsaG~Da~~~Dplg~l~lt~~~~~~~~~ 324 (362)
T 3men_A 246 VAGFDDERGAGEGLGYNVNLPMPHGSSEAAFFERVDDAL-RELRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGH 324 (362)
T ss_dssp SSCCTTCCCSGGGTTSEEEEEECTTBCHHHHHHHHHHHH-HHHHHHCCSEEEEEECSTTBTTCTTCCBCBCHHHHHHHHH
T ss_pred CCCccccccCCCCCceeEeeccCCCCChHHHHHHHHHHH-HHHHhcCCCEEEEECcccCcCCCCCCCccCCHHHHHHHHH
Confidence 1247899999999999999999999976 5789999999999999999999999999999999999888
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcch-HHHHHHHHHHHHc
Q psy8529 380 LVFMKARERRVPIVMLTSGGYLKQT-ARIIADSILNLAD 417 (436)
Q Consensus 380 ~l~~~a~~~~~~iv~vleGGY~~~~-~~~~~~~v~~l~~ 417 (436)
.+.+ .++|++++|||||++++ ++++...+..|.+
T Consensus 325 ~l~~----~~~~~v~vleGGY~~~~l~~~~~a~l~~l~~ 359 (362)
T 3men_A 325 LIGA----LRLPTVIVQEGGYHIESLEANARSFFGGFGA 359 (362)
T ss_dssp HHHT----TCCCEEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHh----hCCCEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 7754 47999999999999875 5566666665543
No 10
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=99.89 E-value=8.1e-24 Score=214.17 Aligned_cols=81 Identities=23% Similarity=0.349 Sum_probs=76.5
Q ss_pred cchHHHHHHHHHhCCeEEEecCCCCCCCCCCCccccccccHHHHHHHHHhhCCCceEEEEeccCCCCC-----ccccCCc
Q psy8529 2 EYGTLEAGFLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQFS-----DYYFPSA 76 (436)
Q Consensus 2 ~gg~~~a~~~~~~~~~a~~~~~G~HHa~~~~~~GfC~~N~~a~a~~~~~~~~~~~rv~iiD~D~h~g~-----f~~~~~v 76 (436)
+||++.|++.++++++|+++|||+|||++++++|||+|||+|||++++++++ .+||+|||||||||| ||+||+|
T Consensus 107 aGg~l~aa~~v~~g~~a~~ppGG~HHA~~~~a~GFC~fNnvAiAa~~l~~~g-~~RV~IvD~DvHHGnGtq~iF~~dp~V 185 (375)
T 1c3p_A 107 TGSTVQAIEEFLKGNVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKG-FKRILYIDLDAHHCDGVQEAFYDTDQV 185 (375)
T ss_dssp HHHHHHHHHHHHTTCEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHHHTT-CCCEEEEECSSSCCHHHHHHHTTCSSE
T ss_pred hhHHHHHHHHHHcCCceeecCcccceeeeccCCCceeecHHHHHHHHHHHhC-CCeEEEEecCCCCCHHHHHHhccCCCE
Confidence 6899999999999889999999999999999999999999999999998874 689999999999999 9999999
Q ss_pred cccccch
Q psy8529 77 HSIKRKR 83 (436)
Q Consensus 77 ~~~k~~r 83 (436)
+.++.++
T Consensus 186 l~~SiH~ 192 (375)
T 1c3p_A 186 FVLSLHQ 192 (375)
T ss_dssp EEEEEEE
T ss_pred EEEeccc
Confidence 9999744
No 11
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=99.88 E-value=9e-24 Score=213.42 Aligned_cols=81 Identities=22% Similarity=0.310 Sum_probs=76.5
Q ss_pred cchHHHHHHHHHhC----CeEEEecCCCCCCCCCCCccccccccHHHHHHHHHhhCCCceEEEEeccCCCCC-----ccc
Q psy8529 2 EYGTLEAGFLALRR----GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQFS-----DYY 72 (436)
Q Consensus 2 ~gg~~~a~~~~~~~----~~a~~~~~G~HHa~~~~~~GfC~~N~~a~a~~~~~~~~~~~rv~iiD~D~h~g~-----f~~ 72 (436)
+||++.|++.++++ +||++|||| |||++++++|||+|||+|||+++++++++++||+|||||+|||| ||+
T Consensus 115 aG~~l~aa~~v~~g~~~~afa~~rppG-HHA~~~~a~GFC~fNnvAiAa~~l~~~~g~~RV~IvD~DvHHGnGTq~iF~~ 193 (369)
T 1zz1_A 115 AGGAVELTRRVATGELSAGYALVNPPG-HHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWN 193 (369)
T ss_dssp HHHHHHHHHHHHTTSCSEEEECCSSCC-TTCCTTCCBTTBSSCHHHHHHHHHHHTSCCSCEEEEECSSSCCHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCcceEEEecCCc-cCcCCCCCCCchHhhHHHHHHHHHHHhcCCCeEEEEecCCCCchhhhHHhcC
Confidence 68999999999985 389999999 99999999999999999999999999999999999999999999 999
Q ss_pred cCCccccccch
Q psy8529 73 FPSAHSIKRKR 83 (436)
Q Consensus 73 ~~~v~~~k~~r 83 (436)
||+|+.++.++
T Consensus 194 d~~Vl~~SiH~ 204 (369)
T 1zz1_A 194 DPSVLTISLHQ 204 (369)
T ss_dssp CTTEEEEEEEE
T ss_pred CCCEEEEeccC
Confidence 99999999644
No 12
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=99.87 E-value=4.3e-23 Score=207.38 Aligned_cols=80 Identities=24% Similarity=0.437 Sum_probs=74.1
Q ss_pred cchHHHHHHHHHhC--CeEEEecCCCCCCCCCCCccccccccHHHHHHHHHhhCCCceEEEEeccCCCCC-----ccccC
Q psy8529 2 EYGTLEAGFLALRR--GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQFS-----DYYFP 74 (436)
Q Consensus 2 ~gg~~~a~~~~~~~--~~a~~~~~G~HHa~~~~~~GfC~~N~~a~a~~~~~~~~~~~rv~iiD~D~h~g~-----f~~~~ 74 (436)
+||++.||+.++++ ++|++||||+|||++++++|||+|||+|||++++++.+ +||+|||||+|||| ||+||
T Consensus 108 aGgsl~aa~~v~~~~~~~Ai~~pgG~HHA~~~~a~GFC~~NdvaiAa~~l~~~~--~RV~ivD~DvHHGnGtq~iF~~d~ 185 (367)
T 3max_A 108 TGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYH--QRVLYIDIDIHHGDGVEEAFYTTD 185 (367)
T ss_dssp HHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBCSCHHHHHHHHHTTTC--SCEEEEECSSSCCHHHHHHTTTCS
T ss_pred HHHHHHHHHHhcccCcceEecCCCCCCcCCcCCCCCchhhhHHHHHHHHHHHcC--CcEEEEecCCCCCchhhHHhcCCC
Confidence 68999999998764 49999999999999999999999999999999998865 89999999999999 99999
Q ss_pred Cccccccch
Q psy8529 75 SAHSIKRKR 83 (436)
Q Consensus 75 ~v~~~k~~r 83 (436)
+|+.++.++
T Consensus 186 ~Vl~~S~H~ 194 (367)
T 3max_A 186 RVMTVSFHK 194 (367)
T ss_dssp SEEEEEEEE
T ss_pred CEEEEeccc
Confidence 999999644
No 13
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=99.87 E-value=4.7e-23 Score=208.03 Aligned_cols=79 Identities=25% Similarity=0.356 Sum_probs=74.2
Q ss_pred cchHHHHHHHHHhC--CeEEEecCCCCCCCCCCCccccccccHHHHHHHHHhhCCCceEEEEeccCCCCC-----ccccC
Q psy8529 2 EYGTLEAGFLALRR--GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQFS-----DYYFP 74 (436)
Q Consensus 2 ~gg~~~a~~~~~~~--~~a~~~~~G~HHa~~~~~~GfC~~N~~a~a~~~~~~~~~~~rv~iiD~D~h~g~-----f~~~~ 74 (436)
+||++.|++.++++ ++|++||||+|||.+++++|||+|||+|||++++++. .+||+|||||+|||| ||+||
T Consensus 116 aGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~~NdiaiAa~~l~~~--~~RV~ivD~DvHHGnGtq~iF~~d~ 193 (388)
T 3ew8_A 116 GGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRK--FERILYVDLDLHHGDGVEDAFSFTS 193 (388)
T ss_dssp HHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTT--CSCEEEEECSSSCCHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHcCCCceeeecCCcccceeecCCCCchhhhHHHHHHHHHHhc--CCeEEEEecCCCCChhHHHHhccCC
Confidence 68999999999987 4899999999999999999999999999999999875 589999999999999 99999
Q ss_pred Cccccccc
Q psy8529 75 SAHSIKRK 82 (436)
Q Consensus 75 ~v~~~k~~ 82 (436)
+|+.++.+
T Consensus 194 ~Vl~~S~H 201 (388)
T 3ew8_A 194 KVMTVSLH 201 (388)
T ss_dssp SEEEEEEE
T ss_pred CEEEEecC
Confidence 99999964
No 14
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=99.87 E-value=5.6e-23 Score=207.48 Aligned_cols=80 Identities=23% Similarity=0.382 Sum_probs=74.2
Q ss_pred cchHHHHHHHHHhC--CeEEEecCCCCCCCCCCCccccccccHHHHHHHHHhhCCCceEEEEeccCCCCC-----ccccC
Q psy8529 2 EYGTLEAGFLALRR--GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQFS-----DYYFP 74 (436)
Q Consensus 2 ~gg~~~a~~~~~~~--~~a~~~~~G~HHa~~~~~~GfC~~N~~a~a~~~~~~~~~~~rv~iiD~D~h~g~-----f~~~~ 74 (436)
+||++.||+.++++ ++|++++||+|||++++++|||+|||+|||++++++.+ +||+|||||+|||| ||+||
T Consensus 108 aGgtl~Aa~~v~~g~~~~A~~~~gG~HHA~~~~a~GFC~~NdvAiAa~~l~~~~--~RV~ivD~DvHHGnGtq~iF~~d~ 185 (376)
T 4a69_A 108 TGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYH--PRVLYIDIDIHHGDGVQEAFYLTD 185 (376)
T ss_dssp HHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTC--SCEEEEECSSSCCHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHcCCcceeeeCCCCCCcCCcCCCCcchhhhHHHHHHHHHHHhC--CcEEEEeccCCCCcchhhHhcCCC
Confidence 68999999988876 38999999999999999999999999999999999875 89999999999999 99999
Q ss_pred Cccccccch
Q psy8529 75 SAHSIKRKR 83 (436)
Q Consensus 75 ~v~~~k~~r 83 (436)
+|+.++.++
T Consensus 186 ~Vl~~S~H~ 194 (376)
T 4a69_A 186 RVMTVSFHK 194 (376)
T ss_dssp SEEEEEEEE
T ss_pred CEEEEeccc
Confidence 999999643
No 15
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=99.87 E-value=6e-23 Score=208.56 Aligned_cols=81 Identities=28% Similarity=0.433 Sum_probs=75.7
Q ss_pred cchHHHHHHHHHhC----CeEEEecCCCCCCCCCCCccccccccHHHHHHHHHhhCCCceEEEEeccCCCCC-----ccc
Q psy8529 2 EYGTLEAGFLALRR----GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQFS-----DYY 72 (436)
Q Consensus 2 ~gg~~~a~~~~~~~----~~a~~~~~G~HHa~~~~~~GfC~~N~~a~a~~~~~~~~~~~rv~iiD~D~h~g~-----f~~ 72 (436)
+|+++.|++.++++ +||++|||| |||.+++++|||+|||+|||+++++++++++||+|||||+|||| ||+
T Consensus 160 aG~~~~a~~~v~~g~~~~afa~~rPpG-HHA~~~~a~GFC~fNnvAiAa~~l~~~~~~~RV~ivD~DvHHGnGtq~iF~~ 238 (421)
T 2pqp_A 160 AGSVTDLAFKVASRELKNGFAVVRPPG-HHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQ 238 (421)
T ss_dssp HHHHHHHHHHHHTTSSSEEEECCSSCC-TTCBTTBCBTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHHTT
T ss_pred HhHHHHHHHHHHcCccccceeeCCCCC-CCCCCCCCCcchhhCHHHHHHHHHHHhcCCCeEEEEecCCCCChhHHHHhcC
Confidence 57888999999865 499999999 99999999999999999999999999999999999999999999 999
Q ss_pred cCCccccccch
Q psy8529 73 FPSAHSIKRKR 83 (436)
Q Consensus 73 ~~~v~~~k~~r 83 (436)
||+|+.++.++
T Consensus 239 dp~Vl~~S~H~ 249 (421)
T 2pqp_A 239 DPSVLYISLHR 249 (421)
T ss_dssp CTTEEEEEEEE
T ss_pred CCCEEEEeccc
Confidence 99999999754
No 16
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=99.87 E-value=6.5e-23 Score=204.21 Aligned_cols=80 Identities=19% Similarity=0.231 Sum_probs=74.6
Q ss_pred cchHHHHHHHHHhC---CeEEEecCCCCCCCCCCCccccccccHHHHHHHHHhhCCCceEEEEeccCCCCC-----cccc
Q psy8529 2 EYGTLEAGFLALRR---GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQFS-----DYYF 73 (436)
Q Consensus 2 ~gg~~~a~~~~~~~---~~a~~~~~G~HHa~~~~~~GfC~~N~~a~a~~~~~~~~~~~rv~iiD~D~h~g~-----f~~~ 73 (436)
+||++.|++.++++ +||++|||| |||.+++++|||+|||+|||+++++++ +++||+|||||+|||| ||+|
T Consensus 132 aG~~l~a~~~v~~g~~~afal~rppG-HHA~~~~a~GFC~~NnvaiAa~~l~~~-g~~RV~ivD~DvHHGnGtq~iF~~d 209 (341)
T 3q9b_A 132 MASAIDGADLIAAGHKAAFSLCRPPG-HHAGIDMFGGYCFINNAAVAAQRLLDK-GAKKIAILDVDFHHGNGTQDIFYER 209 (341)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCSSCC-TTCBTTBBBTTBSSCHHHHHHHHHHHT-TCSCEEEEECSSSCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCceEecCCCCC-CCCCCCCCCCccccCHHHHHHHHHHHc-CCCeEEEEecCCCCCcchhHHhcCC
Confidence 68999999999986 389999999 999999999999999999999999986 4899999999999999 9999
Q ss_pred CCccccccch
Q psy8529 74 PSAHSIKRKR 83 (436)
Q Consensus 74 ~~v~~~k~~r 83 (436)
|+|+.++.++
T Consensus 210 ~~Vl~~S~H~ 219 (341)
T 3q9b_A 210 GDVFFASLHG 219 (341)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEeccC
Confidence 9999999754
No 17
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=99.85 E-value=2.6e-22 Score=205.71 Aligned_cols=81 Identities=31% Similarity=0.395 Sum_probs=74.8
Q ss_pred cchHHHHHHHHHhCC----eEEEecCCCCCCCCCCCccccccccHHHHHHHHHhhCCCceEEEEeccCCCCC-----ccc
Q psy8529 2 EYGTLEAGFLALRRG----WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQFS-----DYY 72 (436)
Q Consensus 2 ~gg~~~a~~~~~~~~----~a~~~~~G~HHa~~~~~~GfC~~N~~a~a~~~~~~~~~~~rv~iiD~D~h~g~-----f~~ 72 (436)
+|+++.|++.++.+. ||+++||| |||.+++++|||+|||+|||+++++++++++||+|||||+|||| ||+
T Consensus 131 aG~~l~a~~~v~~g~~~~afa~vrppG-HHA~~~~a~GFC~~Nnvaiaa~~~~~~~~~~RV~ivD~DvHHGnGtq~iF~~ 209 (413)
T 2vqm_A 131 VGCVVELVFKVATGELKNGFAVVRPPG-HHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYS 209 (413)
T ss_dssp HHHHHHHHHHHHTTSSSEEEECCCSCC-TTCBTTBCBTTBSSCHHHHHHHHHHHHSCCSCEEEEECSSSCCHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCccceeeeccccc-ccCcCCCCCCccccchHHHHHHHHHHhcCCCeEEEEecccCCCccHHHHHhc
Confidence 577888888888763 78999999 99999999999999999999999999999999999999999999 999
Q ss_pred cCCccccccch
Q psy8529 73 FPSAHSIKRKR 83 (436)
Q Consensus 73 ~~~v~~~k~~r 83 (436)
||+|+.++.++
T Consensus 210 d~~Vl~~S~H~ 220 (413)
T 2vqm_A 210 DPSVLYMSLHR 220 (413)
T ss_dssp CTTEEEEEEEE
T ss_pred Ccccccccchh
Confidence 99999999754
No 18
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=99.85 E-value=2.3e-22 Score=201.40 Aligned_cols=79 Identities=19% Similarity=0.256 Sum_probs=73.5
Q ss_pred cchHHHHHHHHHhC---CeEEEecCCCCCCCCCCCccccccccHHHHHHHHHhhCCCceEEEEeccCCCCC-----cccc
Q psy8529 2 EYGTLEAGFLALRR---GWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQFS-----DYYF 73 (436)
Q Consensus 2 ~gg~~~a~~~~~~~---~~a~~~~~G~HHa~~~~~~GfC~~N~~a~a~~~~~~~~~~~rv~iiD~D~h~g~-----f~~~ 73 (436)
+||++.|++.++++ .||++|||| |||.+++++|||+|||+|||+++++++ .+||+|||||+|||| ||+|
T Consensus 151 aG~~l~aa~~v~~g~~~afal~rPpG-HHA~~~~a~GFC~fNnvAiAa~~l~~~--~~RV~ivD~DvHHGnGtq~iF~~d 227 (362)
T 3men_A 151 AQSALAAAAAVRDGAPAAYALCRPPG-HHARVDAAGGFCYLNNAAIAAQALRAR--HARVAVLDTDMHHGQGIQEIFYAR 227 (362)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSCC-TTCBTTBBBTTBSSCHHHHHHHHHTTT--CSCEEEEECSSSCCHHHHHHTTTC
T ss_pred HHHHHHHHHHHHcCCCceEEeCCCCC-CCCCCCCCCCccccCHHHHHHHHHHHc--CCeEEEEeCcCCCchhHhHHhcCC
Confidence 68899999999976 399999999 999999999999999999999999988 489999999999999 9999
Q ss_pred CCccccccch
Q psy8529 74 PSAHSIKRKR 83 (436)
Q Consensus 74 ~~v~~~k~~r 83 (436)
|+|+.++.++
T Consensus 228 ~~Vl~~S~H~ 237 (362)
T 3men_A 228 RDVLYVSIHG 237 (362)
T ss_dssp SSEEEEEEEE
T ss_pred CCEEEEEecC
Confidence 9999999744
No 19
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=89.59 E-value=2.1 Score=37.15 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=35.9
Q ss_pred HHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 340 RSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 340 ~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
..+...+||+|++..|. |... .++.+.|.+..+.+.+.+++.+.+++++
T Consensus 56 ~~~~~~~pd~Vii~~G~ND~~~-------~~~~~~~~~~l~~li~~~~~~~~~vil~ 105 (190)
T 1ivn_A 56 ALLKQHQPRWVLVELGGNDGLR-------GFQPQQTEQTLRQILQDVKAANAEPLLM 105 (190)
T ss_dssp HHHHHHCCSEEEEECCTTTTSS-------SCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHhcCCCEEEEEeecccccc-------CCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 44556899999999997 4432 3577888877777777777777676655
No 20
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=88.45 E-value=1.7 Score=37.33 Aligned_cols=82 Identities=12% Similarity=0.241 Sum_probs=50.3
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEe---CCCC
Q psy8529 325 TEDQHYLEKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT---SGGY 400 (436)
Q Consensus 325 ~~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl---eGGY 400 (436)
.+-.+.+..+++ .+..++||+|++..|. |... ..+.+.|.+..+.+.+.+++.+.+++++. --.|
T Consensus 49 ~~~~~~~~~~~~----~~~~~~pd~vvi~~G~ND~~~-------~~~~~~~~~~~~~~i~~~~~~~~~vvl~~~~~p~~~ 117 (185)
T 3hp4_A 49 ETSGGALRRLDA----LLEQYEPTHVLIELGANDGLR-------GFPVKKMQTNLTALVKKSQAANAMTALMEIYIPPNY 117 (185)
T ss_dssp CCHHHHHHHHHH----HHHHHCCSEEEEECCHHHHHT-------TCCHHHHHHHHHHHHHHHHHTTCEEEEECCCCCSTT
T ss_pred ccHHHHHHHHHH----HHhhcCCCEEEEEeecccCCC-------CcCHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCcc
Confidence 334555555544 4556899999999997 5533 35678888877777777777777766653 2223
Q ss_pred CcchHHHHHHHHHHHHc
Q psy8529 401 LKQTARIIADSILNLAD 417 (436)
Q Consensus 401 ~~~~~~~~~~~v~~l~~ 417 (436)
..+..+.+.+.+..++.
T Consensus 118 ~~~~~~~~~~~~~~~a~ 134 (185)
T 3hp4_A 118 GPRYSKMFTSSFTQISE 134 (185)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 33222344445555553
No 21
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=81.07 E-value=2.2 Score=39.74 Aligned_cols=67 Identities=18% Similarity=0.113 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCc--------------------------ccCHHHHHHHHH
Q psy8529 327 DQHYLEKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLL--------------------------AISPQGIIRRDE 379 (436)
Q Consensus 327 d~~yl~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~--------------------------~lt~~~~~~~~~ 379 (436)
-.+.+..+++++.. ...+||+|+|..|. |.....|.+.+ ..+.+.|.+..+
T Consensus 71 t~~~~~~~~~~l~~--~~~~pd~V~I~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 148 (274)
T 3bzw_A 71 WDDVPRQAEKLKKE--HGGEVDAILVFMGTNDYNSSVPIGEWFTEQEEQVLSAHGEMKKMVTRKKRTPVMTQDTYRGRIN 148 (274)
T ss_dssp GGGHHHHHHHHHHH--HTTTCCEEEEECCHHHHHTTCCCCCSEEEEEEEEEEEESSCCEEEEEEEEEECCCSSSHHHHHH
T ss_pred HHHHHHHHHHHHhc--cCCCCCEEEEEEecccCcccCCCccccccchhhhhcccchhhcccccccccccCCHHHHHHHHH
Confidence 34466666653321 23789999999999 88877777653 334455655445
Q ss_pred HHHHHHHhc--CCCEEEE
Q psy8529 380 LVFMKARER--RVPIVML 395 (436)
Q Consensus 380 ~l~~~a~~~--~~~iv~v 395 (436)
.+.+.+++. +.+|+++
T Consensus 149 ~li~~lr~~~p~a~Iili 166 (274)
T 3bzw_A 149 IGITQLKKLFPDKQIVLL 166 (274)
T ss_dssp HHHHHHHHHCTTSEEEEE
T ss_pred HHHHHHHHHCCCCeEEEE
Confidence 555555554 5566664
No 22
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=80.25 E-value=11 Score=32.82 Aligned_cols=61 Identities=15% Similarity=0.179 Sum_probs=42.3
Q ss_pred EeeeCCCCCCchHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcC
Q psy8529 317 CRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERR 389 (436)
Q Consensus 317 ~NvpL~~g~~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~ 389 (436)
.|.....+++....+..+++ .+...+||+|++..|.. | +..+.+.|.+-.+.+.+.+++.+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~----~~~~~~pd~Vvi~~G~N----D----~~~~~~~~~~~l~~ii~~l~~~~ 109 (200)
T 4h08_A 49 GRLSNSKSVGDPALIEELAV----VLKNTKFDVIHFNNGLH----G----FDYTEEEYDKSFPKLIKIIRKYA 109 (200)
T ss_dssp EEEEESCCTTCHHHHHHHHH----HHHHSCCSEEEECCCSS----C----TTSCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEeccCCccHHHHHHHHHH----HHhcCCCCeEEEEeeeC----C----CCCCHHHHHHHHHHHHHHHhhhC
Confidence 45555556666666666554 45578999999999973 2 34678888887777777766654
No 23
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=78.71 E-value=3.2 Score=36.09 Aligned_cols=70 Identities=13% Similarity=0.203 Sum_probs=44.8
Q ss_pred eeeCCCCCCchHHHHHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 318 RIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 318 NvpL~~g~~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
|..++ |.+-.+.+..+++ .+..++||+|++..|. |...+.. ..+.+.|.+..+.+.+.+++.+.+++++.
T Consensus 51 n~g~~-G~~~~~~~~~~~~----~~~~~~pd~vvi~~G~ND~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~vil~~ 121 (204)
T 3p94_A 51 DRGIS-GQTTSEMLVRFRQ----DVINLKPKAVVILAGINDIAHNNG----VIALENVFGNLVSMAELAKANHIKVIFCS 121 (204)
T ss_dssp EEECT-TCCHHHHHHHHHH----HTGGGCEEEEEEECCHHHHTTTTS----CCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred EcccC-cccHHHHHHHHHH----HHHhCCCCEEEEEeecCccccccC----CCCHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 44443 3334455554443 3446899999999998 6654321 25778888777777777777677776663
No 24
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=77.58 E-value=6.4 Score=34.96 Aligned_cols=65 Identities=8% Similarity=0.030 Sum_probs=43.3
Q ss_pred CCchHHHHHHHHHHHHHHHH-hCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 325 TEDQHYLEKIEAGLERSLRS-FCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 325 ~~d~~yl~~~~~~l~~~~~~-f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
.+-.+.+..+++ .+.. .+||+|+|..|. |..... .-..+.+.|.+..+.+.+.+++.+.+++++.
T Consensus 54 ~~~~~~~~~~~~----~~~~~~~pd~vvi~~G~ND~~~~~---~~~~~~~~~~~~l~~~i~~~~~~~~~vil~~ 120 (240)
T 3mil_A 54 YTSRWALKILPE----ILKHESNIVMATIFLGANDACSAG---PQSVPLPEFIDNIRQMVSLMKSYHIRPIIIG 120 (240)
T ss_dssp CCHHHHHHHHHH----HHHHCCCEEEEEEECCTTTTSSSS---TTCCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred ccHHHHHHHHHH----HhcccCCCCEEEEEeecCcCCccC---CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEc
Confidence 334555555554 3333 689999999998 554321 3357788888777777777777777666654
No 25
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=76.85 E-value=6.1 Score=34.64 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=37.5
Q ss_pred HHHHHhCC-CEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcC---------CCEEEEe
Q psy8529 340 RSLRSFCP-DIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERR---------VPIVMLT 396 (436)
Q Consensus 340 ~~~~~f~P-dlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~---------~~iv~vl 396 (436)
..+..++| |+|++..|. |... ....+.+.|.+-.+.+.+.+++.+ .+++++.
T Consensus 76 ~~l~~~~p~d~vvi~~G~ND~~~-----~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~P~~~iil~~ 138 (216)
T 2q0q_A 76 SCLATHLPLDLVIIMLGTNDTKA-----YFRRTPLDIALGMSVLVTQVLTSAGGVGTTYPAPKVLVVS 138 (216)
T ss_dssp HHHHHHCSCSEEEEECCTGGGSG-----GGCCCHHHHHHHHHHHHHHHHTCTTTTTBCCCCCEEEEEE
T ss_pred HHHHhCCCCCEEEEEecCcccch-----hcCCCHHHHHHHHHHHHHHHHHhcccccccCCCCeEEEEe
Confidence 34566888 999999998 5533 134678888877777777777766 5677664
No 26
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=74.91 E-value=6.4 Score=34.88 Aligned_cols=70 Identities=16% Similarity=0.228 Sum_probs=41.3
Q ss_pred EeeeCCCCCCchHHHHHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 317 CRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 317 ~NvpL~~g~~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
+|..+. |.+-.+.+..|++. +..++||+|++..|. |...+.+. .+.+.+..-.+.+.+.+++.+.+++++
T Consensus 54 iN~Gi~-G~tt~~~l~r~~~~----v~~~~Pd~vvi~~G~ND~~~~~~~----~~~~~~~~~l~~ii~~~~~~~~~iil~ 124 (209)
T 4hf7_A 54 IGRGIS-GQTSYQFLLRFRED----VINLSPALVVINAGTNDVAENTGA----YNEDYTFGNIASMAELAKANKIKVILT 124 (209)
T ss_dssp EEEECT-TCCHHHHHHHHHHH----TGGGCCSEEEECCCHHHHTTSSSS----CCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEeccC-cccHHHHHHHHHHH----HHhcCCCEEEEEeCCCcCcccccc----ccHHHHHHHHHHhhHHHhccCceEEEE
Confidence 344443 33345556555543 345899999999998 76554332 244555444444555666667776654
No 27
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=72.44 E-value=2.4 Score=37.11 Aligned_cols=55 Identities=13% Similarity=0.125 Sum_probs=38.6
Q ss_pred HHHHhCCCEEEEecCC-CcCCCCCCC---CcccCHHHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 341 SLRSFCPDIIVYNAGT-DVLLNDPLG---LLAISPQGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 341 ~~~~f~PdlivvsaG~-D~~~~Dplg---~~~lt~~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
.+...+||+|++..|. |.....+.+ ....+.+.|.+..+.+.+.+++.+.+++++
T Consensus 78 ~~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vil~ 136 (216)
T 3rjt_A 78 DVMALQPDYVSLMIGVNDVWRQFDMPLVVERHVGIDEYRDTLRHLVATTKPRVREMFLL 136 (216)
T ss_dssp HTGGGCCSEEEEECCHHHHHHHHHSTTCGGGCCCHHHHHHHHHHHHHHHGGGSSEEEEE
T ss_pred HHhhcCCCEEEEEeeccccchhhccccccccCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 3456899999999998 654332211 125678888887777877777777777766
No 28
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=68.87 E-value=4.1 Score=36.13 Aligned_cols=68 Identities=15% Similarity=0.249 Sum_probs=40.3
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCCEEEEecCC-CcC-CCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 325 TEDQHYLEKIEAGLERSLRSFCPDIIVYNAGT-DVL-LNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 325 ~~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~-D~~-~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
.+-.+.+..++.-+.+.+...+||+|+++.|. |.. ..+ ....+.+.|.+..+.+.+.+++. .+++++.
T Consensus 67 ~t~~~~~~~~~~~~~~~~~~~~pd~vvi~~G~ND~~~~~~---~~~~~~~~~~~~l~~li~~l~~~-~~iil~~ 136 (218)
T 1vjg_A 67 DTSSDIAKRWLQEVSLRLHKEYNSLVVFSFGLNDTTLENG---KPRVSIAETIKNTREILTQAKKL-YPVLMIS 136 (218)
T ss_dssp CCHHHHHHHHHHHHHTTCCTTSEEEEEEECCHHHHCEETT---EESSCHHHHHHHHHHHHHHHHHH-SCEEEEC
T ss_pred cCHHHHHHHhHHhhhhhhccCCCCEEEEEecCCcchhhcc---cccCCHHHHHHHHHHHHHHHHHh-CcEEEEC
Confidence 33445555554322211113599999999998 654 211 22467777877666666666665 7777764
No 29
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=65.67 E-value=7.3 Score=34.90 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=30.1
Q ss_pred HHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhc--CCCEEEE
Q psy8529 342 LRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARER--RVPIVML 395 (436)
Q Consensus 342 ~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~--~~~iv~v 395 (436)
+...+||+|++..|. |.. .+.+.|.+..+.+.+.+++. +.+++++
T Consensus 89 l~~~~pd~vvi~~G~ND~~---------~~~~~~~~~l~~~i~~l~~~~p~~~ii~~ 136 (232)
T 1es9_A 89 LEHIRPKIVVVWVGTNNHG---------HTAEQVTGGIKAIVQLVNERQPQARVVVL 136 (232)
T ss_dssp TTTCCCSEEEEECCTTCTT---------SCHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred cccCCCCEEEEEeecCCCC---------CCHHHHHHHHHHHHHHHHHHCCCCeEEEe
Confidence 345789999999997 443 56777776666666666554 4455554
No 30
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=64.62 E-value=20 Score=32.02 Aligned_cols=52 Identities=12% Similarity=0.162 Sum_probs=36.0
Q ss_pred HHHHHhCC-CEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhc-------CCCEEEEe
Q psy8529 340 RSLRSFCP-DIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARER-------RVPIVMLT 396 (436)
Q Consensus 340 ~~~~~f~P-dlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~-------~~~iv~vl 396 (436)
..+..++| |+|+|..|. |... ....+.+.|.+..+.+.+.+++. +.+|+++.
T Consensus 94 ~~l~~~~p~d~VvI~~GtND~~~-----~~~~~~~~~~~~l~~li~~ir~~~~~~~~p~~~iil~~ 154 (232)
T 3dci_A 94 VALSCHMPLDLVIIMLGTNDIKP-----VHGGRAEAAVSGMRRLAQIVETFIYKPREAVPKLLIVA 154 (232)
T ss_dssp HHHHHHCSCSEEEEECCTTTTSG-----GGTSSHHHHHHHHHHHHHHHHHCCCSSTTCCCEEEEEE
T ss_pred HHHhhCCCCCEEEEEeccCCCcc-----ccCCCHHHHHHHHHHHHHHHHHhcccccCCCCeEEEEe
Confidence 34567899 999999997 4433 22357888888777777777774 34566553
No 31
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=64.48 E-value=12 Score=36.98 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=38.3
Q ss_pred HHHHHHHhCC-CEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 338 LERSLRSFCP-DIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 338 l~~~~~~f~P-dlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
+.+++.+++| |+|+|+.|. |...+ ...+.+.|.+..+.+.+.+++.+.+++++
T Consensus 221 l~~~l~~~~p~d~VvI~~G~ND~~~~-----~~~~~~~~~~~l~~ii~~lr~~~a~vilv 275 (375)
T 2o14_A 221 LEAILKYIKPGDYFMLQLGINDTNPK-----HKESEAEFKEVMRDMIRQVKAKGADVILS 275 (375)
T ss_dssp HHHHHTTCCTTCEEEEECCTGGGCGG-----GCCCHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHhCCCCCEEEEEEEccCCCcc-----CCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3445667899 999999998 65442 23567888877777777777777766655
No 32
>3mnf_A PAC2 family protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.97A {Streptomyces avermitilis}
Probab=64.16 E-value=91 Score=28.85 Aligned_cols=153 Identities=13% Similarity=0.066 Sum_probs=84.9
Q ss_pred HHHHHHHHhcCCCeEEEEEeccccc-----------CccceeccccCCCEEEEEecCCCCCCCCe-eEeeeCCCCCCchH
Q psy8529 262 SLLVKLLFQSKSISTAMIVDLDAHQ-----------GNGYEKDFMNETRIFIMETCITSKAKEAI-RCRIELAPYTEDQH 329 (436)
Q Consensus 262 AIAa~~l~~~~g~~rV~IvD~D~Hh-----------GnGtq~if~~d~~V~~~SiH~~~~~~~g~-~~NvpL~~g~~d~~ 329 (436)
-+|+.||.++.+.++|+-||.|-.. -+|+..+-|..+++.+.... + ..+..+ -+.=|.|+ ..
T Consensus 23 ~~a~~hL~~~l~~~~va~id~d~~~dy~~~rP~v~~~~g~~~~~~p~~~~~~~~~~-d-~~~~~~lll~g~eP~-~~--- 96 (250)
T 3mnf_A 23 STAVAHLDREWKGEVFAALDAEDYYDFQVNRPTVWLDGGVRKITWPTTRLSVVRVG-G-EKPRDLVLVRGIEPS-MR--- 96 (250)
T ss_dssp HHHHHHHHHHTTCEEEEECCGGGTCCTTTSCCEEEEETTEEEEECCCEEEEEEEEE-S-SSEEEEEEEEEECCS-SC---
T ss_pred HHHHHHHHHHcCCeEEEEEechhccccCCCCCEEEEeCCEEEeecCCceEEEEecC-C-CCCCcEEEEECCCCc-hH---
Confidence 4788999999899999999998652 12322222222222222221 1 011111 12333442 22
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEecCCCcCC--CCCCCCccc-CHHHH--------------HHHHHHHHHHHHhcCCCE
Q psy8529 330 YLEKIEAGLERSLRSFCPDIIVYNAGTDVLL--NDPLGLLAI-SPQGI--------------IRRDELVFMKARERRVPI 392 (436)
Q Consensus 330 yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~--~Dplg~~~l-t~~~~--------------~~~~~~l~~~a~~~~~~i 392 (436)
+ ..|-+.+..++++++.+.||.-.|+..-. ..|++-+.. |.+.. .-+.-.|...+.+.|+|.
T Consensus 97 w-~~f~~~vl~~a~~~gv~~iv~lgg~~~~~phtrp~~v~~~at~~~l~~~~~~~~~~~~~p~gi~glL~~~~~~~gi~a 175 (250)
T 3mnf_A 97 W-RSFCNELLAFAHELGVELVVVLGALLGDTPHTRPVPVSGVTSDPDLARTMDLEETKYEGPTGIVGILQEACTHAGVPA 175 (250)
T ss_dssp H-HHHHHHHHHHHHHHTCCEEEEEEEEEESCCTTSCCCEEEEECCHHHHHHSCCCCCCCCSCCCHHHHHHHHHHHHTCCE
T ss_pred H-HHHHHHHHHHHHHcCCCEEEEEeCccCCCCCCCCcceEEEECCHHHHHhhhccccccccCccHHHHHHHHHHHCCCCE
Confidence 2 44445555688999999999999985322 345332111 11111 122335666677789998
Q ss_pred EEEeC--CCC-----CcchHHHHHHHHHHHHccCCC
Q psy8529 393 VMLTS--GGY-----LKQTARIIADSILNLADLGLI 421 (436)
Q Consensus 393 v~vle--GGY-----~~~~~~~~~~~v~~l~~~~l~ 421 (436)
+.++. =+| ++.++.++-+.+..++|.+++
T Consensus 176 ~~l~~~vp~Y~~~~pdP~AA~~lL~~l~~~~gl~v~ 211 (250)
T 3mnf_A 176 VSLWAAVPHYVSQPPNPKATLALLNRLEDLIDVRIP 211 (250)
T ss_dssp EEEEEEEEGGGCCSCCHHHHHHHHHHHHHHHTCCCC
T ss_pred EEEEEeCCccccCCCCHHHHHHHHHHHHHHhCCCCC
Confidence 77653 355 344566666777777777664
No 33
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=61.82 E-value=18 Score=30.62 Aligned_cols=61 Identities=15% Similarity=0.121 Sum_probs=37.3
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 325 TEDQHYLEKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 325 ~~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
.+-.+.+..+++ .+...+||+|+++.|. |.. .....+.+.|.+..+.+.+.++ +.+++++.
T Consensus 50 ~~~~~~~~~~~~----~~~~~~pd~vvi~~G~ND~~-----~~~~~~~~~~~~~l~~~i~~~~--~~~vi~~~ 111 (195)
T 1yzf_A 50 DTTEDGLKRLNK----EVLIEKPDEVVIFFGANDAS-----LDRNITVATFRENLETMIHEIG--SEKVILIT 111 (195)
T ss_dssp CCHHHHHHHHHH----HTGGGCCSEEEEECCTTTTC-----TTSCCCHHHHHHHHHHHHHHHC--GGGEEEEC
T ss_pred CCHHHHHHHHHH----hhhhcCCCEEEEEeeccccC-----ccCCCCHHHHHHHHHHHHHHhc--CCEEEEEc
Confidence 334445554444 3446899999999997 443 1124677878765555555544 55666653
No 34
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=59.93 E-value=55 Score=31.87 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHhC--CCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCC-EEEEeCCCCCcch
Q psy8529 329 HYLEKIEAGLERSLRSFC--PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP-IVMLTSGGYLKQT 404 (436)
Q Consensus 329 ~yl~~~~~~l~~~~~~f~--PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~-iv~vleGGY~~~~ 404 (436)
.+...+.+.+..++++|+ |+.|++..+ ..|.+ +.+...+.+..+.+.+..++.+.. +|+|.+-+|+.+.
T Consensus 117 ~~~~~~~~~w~~iA~ryk~~~~~Vi~el~-----NEP~~--~~~~~~w~~~~~~~i~~IR~~dp~~~Iiv~g~~w~~~~ 188 (345)
T 3jug_A 117 SDLDRAVDYWIEMKDALIGKEDTVIINIA-----NEWYG--SWDGAAWADGYIDVIPKLRDAGLTHTLMVDAAGWGQYP 188 (345)
T ss_dssp HHHHHHHHHHHHTHHHHTTCTTTEEEECC-----TTCCC--SSCHHHHHHHHHHHHHHHHHTTCCSCEEEECBTTTTBT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEEEec-----CCCCC--CCCHHHHHHHHHHHHHHHHhhCCCCEEEEeCCCccccc
Confidence 345666666667777885 566767665 77877 345667776667777777776554 5555555677553
No 35
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=59.75 E-value=9.5 Score=34.14 Aligned_cols=58 Identities=22% Similarity=0.362 Sum_probs=36.0
Q ss_pred CchHHHHHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhc--CCCEEEE
Q psy8529 326 EDQHYLEKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARER--RVPIVML 395 (436)
Q Consensus 326 ~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~--~~~iv~v 395 (436)
+-.+++..+++. .+..++||+|+|..|. |. ..+.+.|....+.+.+.+++. +.+++++
T Consensus 77 t~~~~~~~~~~~---~l~~~~pd~vvi~~G~ND~---------~~~~~~~~~~l~~~i~~l~~~~p~~~iil~ 137 (229)
T 1fxw_F 77 TTRHVLWRLKNG---ELENIKPKVIVVWVGTNNH---------ENTAEEVAGGIEAIVQLINTRQPQAKIIVL 137 (229)
T ss_dssp CHHHHHHHHHTT---TTSSCCCSEEEEECCTTCT---------TSCHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred hHHHHHHHHHcC---ccccCCCCEEEEEEecCCC---------CCCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 334454444321 2345789999999997 44 257777777666666666654 4456554
No 36
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=54.92 E-value=26 Score=34.83 Aligned_cols=51 Identities=24% Similarity=0.214 Sum_probs=33.6
Q ss_pred HHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhc--CCCEEEEe
Q psy8529 339 ERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARER--RVPIVMLT 396 (436)
Q Consensus 339 ~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~--~~~iv~vl 396 (436)
...+.+.+||+|+|..|. |...+ ++.+.|.+-.+.+.+..++. +.||+++.
T Consensus 237 ~~~l~~~~pdlVvI~lGtND~~~~-------~~~~~~~~~l~~li~~ir~~~P~a~Illv~ 290 (385)
T 3skv_A 237 ARLIRDLPADLISLRVGTSNFMDG-------DGFVDFPANLVGFVQIIRERHPLTPIVLGS 290 (385)
T ss_dssp HHHHHHSCCSEEEEEESHHHHTTT-------CCTTTHHHHHHHHHHHHHTTCSSSCEEEEE
T ss_pred HHHHhccCCCEEEEEeeccCCCCC-------CCHHHHHHHHHHHHHHHHHHCCCCcEEEEc
Confidence 345567899999999998 66542 45555665555555555654 56777654
No 37
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=51.79 E-value=15 Score=34.64 Aligned_cols=54 Identities=13% Similarity=0.278 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEE
Q psy8529 328 QHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIV 393 (436)
Q Consensus 328 ~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv 393 (436)
+.+...+.+.|..++++++||+|+.-.|.|.|-+ .....+.+...++..+.|++
T Consensus 130 ~~~~~~l~~~l~~~ir~~~PdvV~t~~~~d~HpD------------H~~~~~a~~~A~~~~~~~~~ 183 (273)
T 3dff_A 130 HDLVGEVADDIRSIIDEFDPTLVVTCAAIGEHPD------------HEATRDAALFATHEKNVPVR 183 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSEEEEECCTTCCHH------------HHHHHHHHHHHHHHHTCCEE
T ss_pred cchHHHHHHHHHHHHHHcCCCEEEECCCCCCChH------------HHHHHHHHHHHHHHcCCCEE
Confidence 3456667777888999999999999888777654 44455555555555676654
No 38
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=51.77 E-value=30 Score=34.72 Aligned_cols=52 Identities=27% Similarity=0.252 Sum_probs=36.2
Q ss_pred HHHHHHHHHhCCCEEEEecCCCcCCCCCCCCccc---------CHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAI---------SPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 336 ~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~l---------t~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
..+..+.++++|++||| |++..+.. ..+.+.++.+.|..+|+++++|++++-
T Consensus 300 ~~~~~l~~~~~~~lIvI---------D~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~ls 360 (444)
T 2q6t_A 300 ARARRLVSQNQVGLIII---------DYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALS 360 (444)
T ss_dssp HHHHHHHHHSCCCEEEE---------ECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHHHHcCCCEEEE---------cChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 33444566789999998 33333322 134567788888999999999999884
No 39
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=51.56 E-value=43 Score=33.78 Aligned_cols=71 Identities=15% Similarity=0.145 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcchHHHHHHH
Q psy8529 333 KIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADS 411 (436)
Q Consensus 333 ~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~~~~~~~~~ 411 (436)
.+++.|..+.++|+|++|+|.... -...+|. .++.. .++.++.++||+.+--.||...........
T Consensus 84 kL~~~i~~~~~~~~P~~I~v~~TC~~~iIGdD-------i~~v~------~~~~~~~~ipVi~v~~~Gf~~~~~~G~~~a 150 (460)
T 2xdq_A 84 ELKRLCLEIKRDRNPSVIVWIGTCTTEIIKMD-------LEGLA------PKLEAEIGIPIVVARANGLDYAFTQGEDTV 150 (460)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEECHHHHHTTCC-------HHHHH------HHHHHHHSSCEEEEECCTTTCCTTHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCHHHHHhhC-------HHHHH------HHHhhccCCcEEEEecCCccccHHHHHHHH
Confidence 356777778889999987775543 5555553 22222 222334689999999999885443333334
Q ss_pred HHHHH
Q psy8529 412 ILNLA 416 (436)
Q Consensus 412 v~~l~ 416 (436)
+.++.
T Consensus 151 ~~al~ 155 (460)
T 2xdq_A 151 LAAMA 155 (460)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 40
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=51.25 E-value=12 Score=33.34 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=33.3
Q ss_pred hCCCEEEEecCC-CcCCCCCCCCcc-cCHHHHHHHHHHHHHHHHhc--CCCEEEEe
Q psy8529 345 FCPDIIVYNAGT-DVLLNDPLGLLA-ISPQGIIRRDELVFMKARER--RVPIVMLT 396 (436)
Q Consensus 345 f~PdlivvsaG~-D~~~~Dplg~~~-lt~~~~~~~~~~l~~~a~~~--~~~iv~vl 396 (436)
.+||+|++..|. |...+-|.+.+. .+.+.|..-.+.+.+.+++. +.+|+++.
T Consensus 81 ~~pd~Vii~~G~ND~~~~~~~~~~~~~~~~~f~~~l~~li~~l~~~~P~~~iil~~ 136 (232)
T 3dc7_A 81 EDADFIAVFGGVNDYGRDQPLGQYGDCDMTTFYGALMMLLTGLQTNWPTVPKLFIS 136 (232)
T ss_dssp TTCSEEEEECCHHHHHTTCCCCCTTCCSTTSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCCCEEEEEEeccccccCcCCccccccchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 489999999999 777766766553 23344444444444545554 67877764
No 41
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=51.07 E-value=1.2e+02 Score=26.27 Aligned_cols=91 Identities=15% Similarity=0.133 Sum_probs=55.2
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCH-HHHHHHHHHHHHHHHhcCCCEEEEe---
Q psy8529 321 LAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISP-QGIIRRDELVFMKARERRVPIVMLT--- 396 (436)
Q Consensus 321 L~~g~~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~-~~~~~~~~~l~~~a~~~~~~iv~vl--- 396 (436)
.++.....+=+..+.+-|..++++|+||.+.| .+++-.-|.++ -...+.--.+.-.+.+.++|+.-.-
T Consensus 38 t~~~~~~~~RL~~I~~~l~~~i~~~~Pd~vai--------E~~F~~~n~~sal~lgqarGv~~la~~~~glpv~eytP~~ 109 (166)
T 4ep4_A 38 TSPQEPAKERVGRIHARVLEVLHRFRPEAVAV--------EEQFFYRQNELAYKVGWALGAVLVAAFEAGVPVYAYGPMQ 109 (166)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHHHHCCSEEEE--------ECCCCSSCSHHHHHHHHHHHHHHHHHHHHTCCEEEECHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEE--------eehhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHH
Confidence 34444556666666677888999999999998 56664445432 2333333334444566799987652
Q ss_pred ----CCCCCcchHHHHHHHHHHHHccC
Q psy8529 397 ----SGGYLKQTARIIADSILNLADLG 419 (436)
Q Consensus 397 ----eGGY~~~~~~~~~~~v~~l~~~~ 419 (436)
--||-...=+-+...|..+++.+
T Consensus 110 vKkavtG~G~A~K~QV~~mV~~lL~l~ 136 (166)
T 4ep4_A 110 VKQALAGHGHAAKEEVALMVRGILGLK 136 (166)
T ss_dssp HHHHHHSSTTCCHHHHHHHHHHHTTCS
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHhcCC
Confidence 12443333245677788877654
No 42
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=49.22 E-value=18 Score=33.94 Aligned_cols=54 Identities=15% Similarity=0.296 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEE
Q psy8529 328 QHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIV 393 (436)
Q Consensus 328 ~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv 393 (436)
+.+...+.+.|..++++++||+|+.-.|.|.|-+- ....+.+...++..+.|++
T Consensus 127 ~~~~~~~~~~l~~~ir~~~PdvV~t~~~~d~HpDH------------~~~~~a~~~A~~~~~~~~~ 180 (270)
T 3dfi_A 127 HDLVAAIREDIESMIAECDPTLVLTCVAIGKHPDH------------KATRDATLLAARERGIPLR 180 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSEEEEECCTTCCHHH------------HHHHHHHHHHHHHTTCCEE
T ss_pred cchHHHHHHHHHHHHHHcCCCEEEeCCCCCCChhH------------HHHHHHHHHHHHHcCCCee
Confidence 34556677778889999999999998887776543 4444555555555666654
No 43
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=48.05 E-value=41 Score=33.94 Aligned_cols=51 Identities=24% Similarity=0.189 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCC--EEEEecCCCcCCCCCCCCccc------CHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 337 GLERSLRSFCPD--IIVYNAGTDVLLNDPLGLLAI------SPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 337 ~l~~~~~~f~Pd--livvsaG~D~~~~Dplg~~~l------t~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
.+..+.++++|+ +||| |++..+.. ..+...++.+.|..+|+++++|++++-
T Consensus 299 ~ir~l~~~~~~~~~lIVI---------D~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~ls 357 (444)
T 3bgw_A 299 KTRQTKRKNPGKRVIVMI---------DYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALS 357 (444)
T ss_dssp HHHHHHHHSCSSCEEEEE---------ECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHhCCCCeEEEE---------ecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 344456678999 9997 33433321 234677888889999999999998874
No 44
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=47.72 E-value=12 Score=36.52 Aligned_cols=55 Identities=25% Similarity=0.240 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHh-CCCEEEEecCCCcCCCCCCCCcccCH------HHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 333 KIEAGLERSLRSF-CPDIIVYNAGTDVLLNDPLGLLAISP------QGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 333 ~~~~~l~~~~~~f-~PdlivvsaG~D~~~~Dplg~~~lt~------~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
.++..+..+.+++ ++++||| |++..+..+. ....++.+.|..+|+++++||+++-
T Consensus 142 ~i~~~ir~l~~~~gg~~lIVI---------DyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~ls 203 (338)
T 4a1f_A 142 QIRLQLRKLKSQHKELGIAFI---------DYLQLMSGSKATKERHEQIAEISRELKTLARELEIPIIALV 203 (338)
T ss_dssp HHHHHHHHHHHHCTTEEEEEE---------EEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEE---------echHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3444455556678 8999998 5555443321 2367888899999999999999873
No 45
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=47.68 E-value=25 Score=31.64 Aligned_cols=58 Identities=9% Similarity=-0.083 Sum_probs=33.3
Q ss_pred HHHHHHHhCC-CEEEEecCC-CcCCCC--CC-CC---------------cccCHHHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 338 LERSLRSFCP-DIIVYNAGT-DVLLND--PL-GL---------------LAISPQGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 338 l~~~~~~f~P-dlivvsaG~-D~~~~D--pl-g~---------------~~lt~~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
+..++...+| |+|+++.|. |+...+ +. +. ...+.+.|.+-.+.+.+.+++.+.+++++
T Consensus 54 ~~~~l~~~~~~d~ViI~~G~ND~~~~~~~~~r~~~~g~g~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~~vil~ 131 (233)
T 1k7c_A 54 FENIADVVTAGDYVIVEFGHNDGGSLSTDNGRTDCSGTGAEVCYSVYDGVNETILTFPAYLENAAKLFTAKGAKVILS 131 (233)
T ss_dssp HHHHHHHCCTTCEEEECCCTTSCSCGGGCCSCCCBSSSSSCEEEEEETTEEEEEEBHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHhhCCCCCEEEEEccCCCCCCcCCcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3445555666 999999999 766542 10 10 01223456665555666666666655554
No 46
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=46.52 E-value=27 Score=33.34 Aligned_cols=54 Identities=24% Similarity=0.189 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhCCC--EEEEecCCCcCCCCCCCCcc------cCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 334 IEAGLERSLRSFCPD--IIVYNAGTDVLLNDPLGLLA------ISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 334 ~~~~l~~~~~~f~Pd--livvsaG~D~~~~Dplg~~~------lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
+...+..+.++++|+ +||| |++..+. -..+...++.+.|..+|+++++|++++-
T Consensus 167 i~~~i~~l~~~~~~~~~lVVI---------D~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~ls 228 (315)
T 3bh0_A 167 IWSKTRQTKRKNPGKRVIVMI---------DYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALS 228 (315)
T ss_dssp HHHHHHHHHHTSSSCCEEEEE---------ECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHhcCCCCeEEEE---------eCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 333444556677888 9887 2222221 1125677888889999999999999884
No 47
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=45.82 E-value=18 Score=31.51 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=32.2
Q ss_pred HHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcC--CCEEEE
Q psy8529 343 RSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERR--VPIVML 395 (436)
Q Consensus 343 ~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~--~~iv~v 395 (436)
...+||+|+++.|. |... +.+.+.|.+..+.+.+.+++.+ .+++++
T Consensus 82 ~~~~pd~vvi~~G~ND~~~-------~~~~~~~~~~l~~~i~~l~~~~p~~~iil~ 130 (214)
T 2hsj_A 82 YGGAVDKIFLLIGTNDIGK-------DVPVNEALNNLEAIIQSVARDYPLTEIKLL 130 (214)
T ss_dssp CCSCCCEEEEECCHHHHHT-------TCCHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HhcCCCEEEEEEecCcCCc-------CCCHHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 35799999999998 5543 3567777776666666666655 455555
No 48
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=45.06 E-value=77 Score=30.06 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 328 QHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 328 ~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
++....|++++. .+++.+||+||+ +| |. =+-.-..+.+.+..+.+.+.++... .|++++.
T Consensus 44 ~~~~~~l~~lv~-~~~~~~~D~vli-aG-D~----l~d~~~~~~~~~~~~~~~l~~L~~~--~pv~~i~ 103 (336)
T 2q8u_A 44 EELKKALDKVVE-EAEKREVDLILL-TG-DL----LHSRNNPSVVALHDLLDYLKRMMRT--APVVVLP 103 (336)
T ss_dssp HHHHHHHHHHHH-HHHHHTCSEEEE-ES-CS----BSCSSCCCHHHHHHHHHHHHHHHHH--SCEEECC
T ss_pred HHHHHHHHHHHH-HHHHhCCCEEEE-CC-cc----ccCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEC
Confidence 566778888776 567789998887 33 30 1111123455555555556555432 7877664
No 49
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=43.94 E-value=40 Score=34.31 Aligned_cols=49 Identities=14% Similarity=0.099 Sum_probs=33.9
Q ss_pred HHHHHHHhCCCEEEEecCCCcCCCCCCCCcc------cCHHHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 338 LERSLRSFCPDIIVYNAGTDVLLNDPLGLLA------ISPQGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 338 l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~------lt~~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
+...+++++|++|||- ++..+. =..+...++.+.|..+|++.+++++++
T Consensus 346 i~~~~~~~~~~lvVID---------~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~ 400 (503)
T 1q57_A 346 LAYMRSGLGCDVIILD---------HISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVI 400 (503)
T ss_dssp HHHHHHTTCCSEEEEE---------CTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHhcCCCEEEEc---------cchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEE
Confidence 4445677899999983 333221 122455677888889999999998887
No 50
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=43.13 E-value=96 Score=29.42 Aligned_cols=62 Identities=21% Similarity=0.335 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy8529 328 QHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGG 399 (436)
Q Consensus 328 ~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGG 399 (436)
+++...|++++. .+.+.+||+||++ | |.. -.-.-+.+.+..+.+.+..+. +.+.|++++. |.
T Consensus 23 ~~~~~~~~~~~~-~~~~~~~D~vl~~-G-Dl~-----d~~~~~~~~~~~~~~~l~~l~-~~~~~v~~v~-GN 84 (333)
T 1ii7_A 23 EEFAEAFKNALE-IAVQENVDFILIA-G-DLF-----HSSRPSPGTLKKAIALLQIPK-EHSIPVFAIE-GN 84 (333)
T ss_dssp HHHHHHHHHHHH-HHHHTTCSEEEEE-S-CSB-----SSSSCCHHHHHHHHHHHHHHH-TTTCCEEEEC-CT
T ss_pred HHHHHHHHHHHH-HHHhcCCCEEEEC-C-CcC-----CCCCCCHHHHHHHHHHHHHHH-HCCCcEEEeC-Cc
Confidence 466678887776 5677899988873 3 222 111223455555555554442 3478877775 44
No 51
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=40.75 E-value=44 Score=34.57 Aligned_cols=68 Identities=22% Similarity=0.280 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecC-CCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcchHHHHHHH
Q psy8529 333 KIEAGLERSLRSFCPDIIVYNAG-TDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADS 411 (436)
Q Consensus 333 ~~~~~l~~~~~~f~PdlivvsaG-~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~~~~~~~~~ 411 (436)
.+.+.|..+.+.|+|++|+|... .-...+|.+. ++.+ .++. +.||+.+---||...........
T Consensus 72 kL~~aI~~~~~~~~P~~I~V~tTC~~elIGdDi~-------~v~~-------~~~~-~~pVi~v~tpgf~g~~~~G~~~a 136 (525)
T 3aek_B 72 LLKDALAAAHARYKPQAMAVALTCTAELLQDDPN-------GISR-------ALNL-PVPVVPLELPSYSRKENYGADET 136 (525)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEECTTGGGSCCCHH-------HHHH-------HHTC-SSCEEECCCCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcHHHHhcccHH-------HHHH-------HhcC-CCCEEEEECCCcCCchhHHHHHH
Confidence 45666777888999997666554 6777777543 2221 1222 78999998888886533333333
Q ss_pred HHHH
Q psy8529 412 ILNL 415 (436)
Q Consensus 412 v~~l 415 (436)
+..+
T Consensus 137 l~al 140 (525)
T 3aek_B 137 FRAL 140 (525)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 52
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=37.98 E-value=1e+02 Score=30.00 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=39.1
Q ss_pred chHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCC-CCcccCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 327 DQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPL-GLLAISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 327 d~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dpl-g~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
.++....|++++. .+.+.+||+||+ +| |=+ -.-..+.+.+..+.+.+..+... +|++++.
T Consensus 25 ~~~~~~~l~~l~~-~~~~~~~D~vli-aG------Dl~hd~~~~~~~~~~~~~~~l~~l~~~--~~v~~i~ 85 (379)
T 3tho_B 25 REELKKALDKVVE-EAEKREVDLILL-TG------DLLHSRNNPSVVALHDLLDYLKRMMRT--APVVVLP 85 (379)
T ss_dssp HHHHHHHHHHHHH-HHHHHTCSEEEE-CS------CCBSCSSSCCHHHHHHHHHHHHHHHHH--SCEEECC
T ss_pred hHHHHHHHHHHHH-HHHhcCCCEEEE-CC------CccccCCCCCHHHHHHHHHHHHHHHhC--CCEEEEc
Confidence 3567778877665 677889999998 33 322 22234567777777777666543 7877664
No 53
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=36.84 E-value=59 Score=32.63 Aligned_cols=53 Identities=25% Similarity=0.234 Sum_probs=36.3
Q ss_pred HHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcc-------cCHHHHHHHHHHHHHHHHhcCCCEEEEeC
Q psy8529 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLA-------ISPQGIIRRDELVFMKARERRVPIVMLTS 397 (436)
Q Consensus 336 ~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~-------lt~~~~~~~~~~l~~~a~~~~~~iv~vle 397 (436)
..+..++.+.+|++|||- .+..+. -..+...++.+.|..+|++.++|++++-.
T Consensus 303 ~~~~~l~~~~~~~livID---------~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 303 AKCRRLKQESGLGMIVID---------YLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQ 362 (454)
T ss_dssp HHHHHHHTTTCCCEEEEE---------CGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEc---------cHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 344445566899999982 222111 13556778888899999999999999854
No 54
>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=35.33 E-value=1.8e+02 Score=27.00 Aligned_cols=104 Identities=14% Similarity=0.124 Sum_probs=44.9
Q ss_pred ccccCccceecccc-CCCEEEEEecCCCCCCCCeeEeeeCCCCCCchHHHHHHHHHHHHHHHHhCCCEEEE-------ec
Q psy8529 283 DAHQGNGYEKDFMN-ETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVY-------NA 354 (436)
Q Consensus 283 D~HhGnGtq~if~~-d~~V~~~SiH~~~~~~~g~~~NvpL~~g~~d~~yl~~~~~~l~~~~~~f~Pdlivv-------sa 354 (436)
+.+.|.=++.|.++ ++.|.+|.+.+ |=..+.=+.+.+..|.+.+..+-..-....||+ ++
T Consensus 7 ~~~~GsM~e~il~~~~~gVa~itlnR------------P~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~Fca 74 (274)
T 4fzw_C 7 HHHHGSMMEFILSHVEKGVMTLTLNR------------PERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCA 74 (274)
T ss_dssp ---------CEEEEEETTEEEEEECC------------TTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBC
T ss_pred CCccccccccEEEEEECCEEEEEEcC------------cCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeC
Confidence 34455445555543 55677777632 211233467777888877775433222335665 45
Q ss_pred CCCcCCC--CCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy8529 355 GTDVLLN--DPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSG 398 (436)
Q Consensus 355 G~D~~~~--Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleG 398 (436)
|.|...- ++-+...-....+....+.+......+..|+|....|
T Consensus 75 G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G 120 (274)
T 4fzw_C 75 GQDLNDRNVDPTGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNG 120 (274)
T ss_dssp CBCCC---------CCCHHHHHHHTHHHHHHHHHHCSSCEEEEECS
T ss_pred CcChHhhhccccccchHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
Confidence 6665321 1111110011122222223333344578999988754
No 55
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=35.32 E-value=49 Score=28.83 Aligned_cols=52 Identities=8% Similarity=-0.029 Sum_probs=32.6
Q ss_pred HHHHHHHHhCCC--EEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 337 GLERSLRSFCPD--IIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 337 ~l~~~~~~f~Pd--livvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
.+...+...+|+ +||+- .|...+...+....++.+.+.+++++.+..++++-
T Consensus 112 ~~~~~~~~~~~~~~llilD--------e~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~ 165 (235)
T 2w0m_A 112 KVIEAKQKLGYGKARLVID--------SVSALFLDKPAMARKISYYLKRVLNKWNFTIYATS 165 (235)
T ss_dssp HHHHHHHHHCSSCEEEEEE--------TGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHhhCCCceEEEEE--------CchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 344456678999 99982 33222222334456777778888888787777663
No 56
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=34.99 E-value=49 Score=28.88 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=28.7
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHH
Q psy8529 325 TEDQHYLEKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELV 381 (436)
Q Consensus 325 ~~d~~yl~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l 381 (436)
.+-.+.+..+++ .+...+||+|++..|. |...+. ..+.+.+.++.+.+
T Consensus 66 ~~~~~~~~~l~~----~l~~~~pd~vvi~~G~ND~~~~~-----~~~~~~l~~li~~i 114 (215)
T 2vpt_A 66 WTIPQIASNINN----WLNTHNPDVVFLWIGGNDLLLNG-----NLNATGLSNLIDQI 114 (215)
T ss_dssp CCHHHHHHHHHH----HHHHHCCSEEEEECCHHHHHHHC-----CCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH----HhhccCCCEEEEEccccccCCCC-----ChhHHHHHHHHHHH
Confidence 334555555544 3446899999999998 654322 22356666544443
No 57
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=33.98 E-value=96 Score=31.22 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecC
Q psy8529 332 EKIEAGLERSLRSFCPDIIVYNAG 355 (436)
Q Consensus 332 ~~~~~~l~~~~~~f~PdlivvsaG 355 (436)
..+++.|..+.+.|+|++|+|...
T Consensus 82 ~~L~~aI~~~~~~~~P~~I~V~tT 105 (458)
T 1mio_B 82 SNIKTAVKNIFSLYNPDIIAVHTT 105 (458)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEEECC
Confidence 345667777888999999877654
No 58
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}
Probab=32.39 E-value=2.7e+02 Score=26.79 Aligned_cols=152 Identities=13% Similarity=0.094 Sum_probs=80.1
Q ss_pred HHHHHHHHHhcCCCeEEEEEecccc------------cCccceeccccCCCEEEEEecCCCCCCCCeeEee-eCCCCCCc
Q psy8529 261 ISLLVKLLFQSKSISTAMIVDLDAH------------QGNGYEKDFMNETRIFIMETCITSKAKEAIRCRI-ELAPYTED 327 (436)
Q Consensus 261 vAIAa~~l~~~~g~~rV~IvD~D~H------------hGnGtq~if~~d~~V~~~SiH~~~~~~~g~~~Nv-pL~~g~~d 327 (436)
.-+|+.+|.++.+.+.|+-||.|-= -.||+..+-+-.-++..+. ...+..+-+=. |.| ....
T Consensus 45 g~~A~~hLi~~l~~~~va~~d~d~l~Dyr~~RP~v~~~~d~~~~~~~P~~~ly~~~----d~~~~~~llL~G~eP-~~~w 119 (325)
T 3e35_A 45 GDQIVDQVLDSLPHQVVARFDHDRLVDYRARRPLLTFKRDTWSDYEEPTIEVRLVQ----DATGAPFLFLSGPEP-DVEW 119 (325)
T ss_dssp HHHHHHHHHHHSCEEEEEEECHHHHSCTTTSCCCEEEETTEEEEECCCCCEEEEEE----CTTCCEEEEEEEECC-SSCH
T ss_pred HHHHHHHHHHHcCCeEEEEEeccccccccCCCCcEEEEcCcceeeecCCeEEEEec----CCCCCcEEEEECCCC-cchH
Confidence 3478889999888999999998833 1344443333222222111 11222222211 333 3334
Q ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEecCC--CcCCCCCCCCc------------cc---CHHHHHHHHHHHHHHHHhcCC
Q psy8529 328 QHYLEKIEAGLERSLRSFCPDIIVYNAGT--DVLLNDPLGLL------------AI---SPQGIIRRDELVFMKARERRV 390 (436)
Q Consensus 328 ~~yl~~~~~~l~~~~~~f~PdlivvsaG~--D~~~~Dplg~~------------~l---t~~~~~~~~~~l~~~a~~~~~ 390 (436)
..| -+.|..++++|+.+.||.-.|+ |.--..|.+-+ .. +.++-.-+.-.|...+.+.|+
T Consensus 120 ~~f----~~avl~~a~~~gV~~vv~Lggip~~vpHtRP~~V~~~at~~el~~~~~~~~~~~~gp~Gi~glL~~~~~~~Gi 195 (325)
T 3e35_A 120 ERF----AAAVGQIVERLGVRLSVSFHGIPMGVPHTRPVGITPHGSRTDLVPGHRSPFEEAQVPGSAEALVEYRLAQAGH 195 (325)
T ss_dssp HHH----HHHHHHHHHHTTEEEEEEEEEEEESCCTTSCCCEEEEESCGGGCC-----CCCCCCCCCHHHHHHHHHHHTTC
T ss_pred HHH----HHHHHHHHHHcCCCEEEEEeCccCCCCCCCCceeEEEeCCHHHHHhhccccccCCCcccHHHHHHHHHHHCCC
Confidence 444 4444557889999999877765 44444554210 00 001111223345556777899
Q ss_pred CEEEEeC--CCCC-----cchHHHHHHHHHHHHccCCC
Q psy8529 391 PIVMLTS--GGYL-----KQTARIIADSILNLADLGLI 421 (436)
Q Consensus 391 ~iv~vle--GGY~-----~~~~~~~~~~v~~l~~~~l~ 421 (436)
+.+.++. =+|- +.++.++-+.+..++|.+++
T Consensus 196 ~a~~l~~~vPhYla~~p~P~AA~alL~~L~~~~gl~vp 233 (325)
T 3e35_A 196 DVLGVAAHVPHYVARSAYPDAALTVLEAITAATGLVLP 233 (325)
T ss_dssp CEEEEEEEEEGGGTTSCCHHHHHHHHHHHHHHHCCCCH
T ss_pred CeEEEEEEcCccccCCCCHHHHHHHHHHHHHHhCCCCC
Confidence 9877653 2443 33455556667676666553
No 59
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A*
Probab=32.25 E-value=44 Score=32.01 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=30.3
Q ss_pred HHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhc--CCCEEEEe
Q psy8529 343 RSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARER--RVPIVMLT 396 (436)
Q Consensus 343 ~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~--~~~iv~vl 396 (436)
..++||+|+|..|. |..... .+.+.|....+.+.+.+++. +.+|+++.
T Consensus 210 ~~~~PdlVvI~lGtND~~~~~------~~~~~~~~~l~~li~~ir~~~p~a~Iil~~ 260 (341)
T 2wao_A 210 SKYVPQVVVINLGTNDFSTSF------ADKTKFVTAYKNLISEVRRNYPDAHIFCCV 260 (341)
T ss_dssp GGCCCSEEEEECCHHHHSSSC------CCHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred cCCCCCEEEEeCccccCCCCC------CCHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 36899999999999 765543 34455655544455544443 45666554
No 60
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus}
Probab=31.94 E-value=32 Score=33.21 Aligned_cols=47 Identities=19% Similarity=0.223 Sum_probs=29.5
Q ss_pred HHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhc--CCCEEEE
Q psy8529 343 RSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARER--RVPIVML 395 (436)
Q Consensus 343 ~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~--~~~iv~v 395 (436)
..++||+|+|..|. |..... .+.+.|.+-.+.+.+.+++. +.+|+++
T Consensus 222 ~~~~Pd~VvI~lG~ND~~~~~------~~~~~~~~~l~~li~~ir~~~p~~~I~l~ 271 (347)
T 2waa_A 222 HRYQPDLIISAIGTNDFSPGI------PDRATYINTYTRFVRTLLDNHPQATIVLT 271 (347)
T ss_dssp GGCCCSEEEECCCHHHHSSSC------CCHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred ccCCCCEEEEEccccCCCCCC------CcHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 35799999999998 665443 34455665555555555554 3445444
No 61
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=31.91 E-value=1.2e+02 Score=29.47 Aligned_cols=60 Identities=10% Similarity=0.220 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 328 QHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 328 ~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
++...+|++++. .+.+-+||+||+ +| |. +..-.-+.+.+..+.+.+.++. +.++|+++|.
T Consensus 43 ~~~~~~l~~~v~-~~~~~~~D~Vli-aG-Dl-----~d~~~p~~~~~~~~~~~l~~L~-~~~~pv~~v~ 102 (386)
T 3av0_A 43 KDIYDSFKLCIK-KILEIKPDVVLH-SG-DL-----FNDLRPPVKALRIAMQAFKKLH-ENNIKVYIVA 102 (386)
T ss_dssp HHHHHHHHHHHH-HHHTTCCSEEEE-CS-CS-----BSSSSCCHHHHHHHHHHHHHHH-HTTCEEEECC
T ss_pred HHHHHHHHHHHH-HHHHcCCCEEEE-CC-CC-----CCCCCCCHHHHHHHHHHHHHHH-hcCCcEEEEc
Confidence 456678888776 466789999887 33 32 1111234455555555555443 2367877665
No 62
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=31.82 E-value=62 Score=33.21 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcch
Q psy8529 334 IEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQT 404 (436)
Q Consensus 334 ~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~~ 404 (436)
+.+.|..+.++|+|++|+|.... -...+|.+. ++.+ ++.++.++||+.+--.||....
T Consensus 76 L~~~I~~~~~~~~P~~I~V~tTC~~e~IGdDi~-------~v~~------~~~~~~g~pVi~v~tpgf~g~~ 134 (511)
T 2xdq_B 76 VVDNIIRKDTEEHPDLIVLTPTCTSSILQEDLQ-------NFVR------RASLSTTADVLLADVNHYRVNE 134 (511)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCHHHHTTCCCHH-------HHHH------HHHHHCSSEEEECCCCTTTCCH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHhccCHH-------HHHH------HhhhccCCCEEEeeCCCcccch
Confidence 44555567778999998887665 666666433 2332 2223468999999999998653
No 63
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=31.80 E-value=2e+02 Score=25.55 Aligned_cols=57 Identities=11% Similarity=0.030 Sum_probs=36.1
Q ss_pred chHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHH-HHHHHHHHHHHHhcCCCEE
Q psy8529 327 DQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGI-IRRDELVFMKARERRVPIV 393 (436)
Q Consensus 327 d~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~-~~~~~~l~~~a~~~~~~iv 393 (436)
+++.++.+++.+. +..+...+.|++..|.+.. -. .+-+ .+..+.+.+.|++.|+++.
T Consensus 80 ~~~~~~~~~~~i~-~a~~lG~~~v~~~~g~~~~-----~~----~~~~~~~~l~~l~~~a~~~gv~l~ 137 (272)
T 2q02_A 80 TEEVVKKTEGLLR-DAQGVGARALVLCPLNDGT-----IV----PPEVTVEAIKRLSDLFARYDIQGL 137 (272)
T ss_dssp CHHHHHHHHHHHH-HHHHHTCSEEEECCCCSSB-----CC----CHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHHHH-HHHHhCCCEEEEccCCCch-----hH----HHHHHHHHHHHHHHHHHHcCCEEE
Confidence 4667777877776 7888999999998886531 11 1223 3334445566776776544
No 64
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=31.10 E-value=2.1e+02 Score=26.23 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCCCeEEEEEecccccCccceeccccCCCEEEEEecCCCCCCCCeeEeeeCCCCCCchHHHHHHHHHHHHH
Q psy8529 262 SLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERS 341 (436)
Q Consensus 262 AIAa~~l~~~~g~~rV~IvD~D~HhGnGtq~if~~d~~V~~~SiH~~~~~~~g~~~NvpL~~g~~d~~yl~~~~~~l~~~ 341 (436)
|||.+.+++ |. +|+++|.|--. .+++-.+.+++.++. -..+|++- .++.+..+
T Consensus 17 aia~~la~~--Ga-~V~~~~~~~~~---~~~~~~~~~~~~~~~------------------~Dv~~~~~---v~~~v~~~ 69 (247)
T 3ged_A 17 QICLDFLEA--GD-KVCFIDIDEKR---SADFAKERPNLFYFH------------------GDVADPLT---LKKFVEYA 69 (247)
T ss_dssp HHHHHHHHT--TC-EEEEEESCHHH---HHHHHTTCTTEEEEE------------------CCTTSHHH---HHHHHHHH
T ss_pred HHHHHHHHC--CC-EEEEEeCCHHH---HHHHHHhcCCEEEEE------------------ecCCCHHH---HHHHHHHH
Confidence 666666653 54 79999987422 233333334444322 12345433 33444556
Q ss_pred HHHh-CCCEEEEecCCCcCCCCCCCCcccCHHHHHH-----------HHHHHHHHHHhcCCCEEEEe
Q psy8529 342 LRSF-CPDIIVYNAGTDVLLNDPLGLLAISPQGIIR-----------RDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 342 ~~~f-~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~-----------~~~~l~~~a~~~~~~iv~vl 396 (436)
.++| +.|++|-.||.- ...|+- .++.+.|.+ +++.+....++.++.+|.+-
T Consensus 70 ~~~~g~iDiLVNNAG~~--~~~~~~--~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInis 132 (247)
T 3ged_A 70 MEKLQRIDVLVNNACRG--SKGILS--SLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIA 132 (247)
T ss_dssp HHHHSCCCEEEECCCCC--CCCGGG--TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHcCCCCEEEECCCCC--CCCCcc--cCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEe
Confidence 6777 589999999963 223433 356666553 34444433344578887764
No 65
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=30.06 E-value=87 Score=27.54 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 336 ~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
+.+...+++++|++|++-.=.....+| +....+....+.+++++.+.+++++.
T Consensus 118 ~~i~~~~~~~~~~~vviD~~~~l~~~~--------~~~~~~~l~~l~~~~~~~~~~vi~~~ 170 (247)
T 2dr3_A 118 EVLRQAIRDINAKRVVVDSVTTLYINK--------PAMARSIILQLKRVLAGTGCTSIFVS 170 (247)
T ss_dssp HHHHHHHHHHTCCEEEEETSGGGTTTC--------GGGHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHhCCCEEEECCchHhhcCC--------HHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 344556777899999874322221122 22344555667777888888888764
No 66
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=30.03 E-value=3.7e+02 Score=25.65 Aligned_cols=150 Identities=9% Similarity=-0.030 Sum_probs=80.8
Q ss_pred HHHHHHHHhcCCCeEEEEEecccc------------cCccceeccccCCCEEEEEecCCCCCCCCee-EeeeCCCCCCch
Q psy8529 262 SLLVKLLFQSKSISTAMIVDLDAH------------QGNGYEKDFMNETRIFIMETCITSKAKEAIR-CRIELAPYTEDQ 328 (436)
Q Consensus 262 AIAa~~l~~~~g~~rV~IvD~D~H------------hGnGtq~if~~d~~V~~~SiH~~~~~~~g~~-~NvpL~~g~~d~ 328 (436)
-+|+.+|.++.+.++|+.||.|-= -.||+..+-+-.-+++.+. +. .+..+- +.=|.|+ ....
T Consensus 43 ~iA~~hLi~~l~~~~va~id~d~l~Dy~~~RP~v~~~~d~~~~~~~p~~~ly~~~---~~-~g~~~lll~gpeP~-~~w~ 117 (319)
T 2p90_A 43 ESSSSHLMDALDHRLIASFNNDELIDYRSRRPVVVIEHNEVTSMDELNLGLHVVR---DN-DNKPFLMLSGPEPD-LRWG 117 (319)
T ss_dssp HHHHHHHHHHSCEEEEEEECHHHHCBHHHHCCCEEECSSSEEEECCCCCEEEEEE---CT-TCCEEEEEEEECCS-BCHH
T ss_pred HHHHHHHHHHcCCeEEEEEechhcccccCCCCcEEEECCcccccccCCeEEEEec---CC-CCCeEEEEECCCCh-HHHH
Confidence 378899999989999999997643 1222222222111222111 11 111121 1224553 2233
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCCc---CCCCCCCCccc--CHH-------------HHHHHHHHHHHHHHhcCC
Q psy8529 329 HYLEKIEAGLERSLRSFCPDIIVYNAGTDV---LLNDPLGLLAI--SPQ-------------GIIRRDELVFMKARERRV 390 (436)
Q Consensus 329 ~yl~~~~~~l~~~~~~f~PdlivvsaG~D~---~~~Dplg~~~l--t~~-------------~~~~~~~~l~~~a~~~~~ 390 (436)
+ |-+.|..++++++...||.-.|+.+ |.. |..-+.. +++ +-.-+...|...+.+.|+
T Consensus 118 ~----f~~~vl~~a~~~gV~~vv~Lggl~~~~phtr-p~~V~~~at~~~l~~~~~~~~~~~~ipggi~glL~~~~~~~Gi 192 (319)
T 2p90_A 118 D----FSNAVVDLVEKFGVENTICLYAAPMTVPHTR-PTVVTAHGNSTDRLKDQVSLDTRMTVPGSASLMLEKLLKDKGK 192 (319)
T ss_dssp H----HHHHHHHHHHHTTCCEEEEEEEEEESCCTTS-CCCEEEEESSGGGCSSCCCCCCCEEECCCHHHHHHHHHHHTTC
T ss_pred H----HHHHHHHHHHHcCCCEEEEEeCccCCCCCCC-CCCeEEEeCCHHHHhhhhccccCcEEeccHHHHHHHHHHHCCC
Confidence 3 4444555888999999999999865 333 4321100 000 001134456666778899
Q ss_pred CEEEEeC------CCC-CcchHHHHHHHHHHHHccCCC
Q psy8529 391 PIVMLTS------GGY-LKQTARIIADSILNLADLGLI 421 (436)
Q Consensus 391 ~iv~vle------GGY-~~~~~~~~~~~v~~l~~~~l~ 421 (436)
|.+.++. +-. ++.++.++-+.+..++|..++
T Consensus 193 ~a~~l~~~vphYl~~~pdP~AA~~lL~~l~~l~gl~id 230 (319)
T 2p90_A 193 NVSGYTVHVPHYVSASPYPAATLKLLQSIADSADLNLP 230 (319)
T ss_dssp CEEEEEEEEEGGGTTSCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CEEEEEEecCcccCCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 9887764 322 233455666677777776554
No 67
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0
Probab=29.43 E-value=2.7e+02 Score=25.51 Aligned_cols=85 Identities=14% Similarity=0.156 Sum_probs=41.5
Q ss_pred CCCEEEEEecCCCCCCCCeeEeeeCCCCCCchHHHHHHHHHHHHHHHHhCCCEEEE-------ecCCCcCCCCCCCCccc
Q psy8529 297 ETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVY-------NAGTDVLLNDPLGLLAI 369 (436)
Q Consensus 297 d~~V~~~SiH~~~~~~~g~~~NvpL~~g~~d~~yl~~~~~~l~~~~~~f~Pdlivv-------saG~D~~~~Dplg~~~l 369 (436)
++.|.++.+.+ |=..+.=+.+.+..|.+.+..+-.+-....||+ |+|.|...-.. ..
T Consensus 18 ~~~v~~itlnr------------p~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~----~~ 81 (267)
T 3oc7_A 18 GGPVARLTLNS------------PHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGS----GG 81 (267)
T ss_dssp SSSEEEEEECC------------GGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC------------
T ss_pred eCCEEEEEecC------------CCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhh----cc
Confidence 67788887752 111233467778888887776533223345544 66777654220 01
Q ss_pred CHH-------HHHHHHHHHHHHHHhcCCCEEEEeC
Q psy8529 370 SPQ-------GIIRRDELVFMKARERRVPIVMLTS 397 (436)
Q Consensus 370 t~~-------~~~~~~~~l~~~a~~~~~~iv~vle 397 (436)
+.+ .+......++.....+..|+|....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 116 (267)
T 3oc7_A 82 SPSSAYDMAVERAREMAALMRAIVESRLPVIAAID 116 (267)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred CchhhhhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 111 1222222333334457889987653
No 68
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=29.19 E-value=74 Score=27.05 Aligned_cols=57 Identities=14% Similarity=0.101 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCH-HHHHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy8529 337 GLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISP-QGIIRRDELVFMKARERRVPIVMLTSGGYLK 402 (436)
Q Consensus 337 ~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~-~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~ 402 (436)
.|..++++|+|+.|+| +.|+. ++=|. .--.+.-.++..++++.++|+..+=|=+-+.
T Consensus 46 ~l~~li~~~~~~~ivV--------GlP~~-~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~Ts~ 103 (150)
T 1vhx_A 46 RLSELIKDYTIDKIVL--------GFPKN-MNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLTTM 103 (150)
T ss_dssp HHHHHHTTSEEEEEEE--------ECCCC-BTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSCHH
T ss_pred HHHHHHHHcCCCEEEE--------eeeec-CCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCCHH
Confidence 3556889999999998 66652 22222 1111112223334445689999976655443
No 69
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=29.16 E-value=42 Score=30.21 Aligned_cols=14 Identities=7% Similarity=0.214 Sum_probs=13.2
Q ss_pred ceEEEEeccCCCCC
Q psy8529 56 STAMIVDLDAHQFS 69 (436)
Q Consensus 56 ~rv~iiD~D~h~g~ 69 (436)
.||++||+|..+++
T Consensus 32 ~~VlliD~D~~~~~ 45 (260)
T 3q9l_A 32 KKTVVIDFAIGLRN 45 (260)
T ss_dssp CCEEEEECCCSSCC
T ss_pred CcEEEEECCCCCCC
Confidence 69999999999998
No 70
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=28.74 E-value=43 Score=29.68 Aligned_cols=14 Identities=21% Similarity=0.157 Sum_probs=13.2
Q ss_pred ceEEEEeccCCCCC
Q psy8529 56 STAMIVDLDAHQFS 69 (436)
Q Consensus 56 ~rv~iiD~D~h~g~ 69 (436)
.||++||+|..+++
T Consensus 32 ~~VlliD~D~~~~~ 45 (237)
T 1g3q_A 32 RKVLAVDGDLTMAN 45 (237)
T ss_dssp CCEEEEECCTTSCC
T ss_pred CeEEEEeCCCCCCC
Confidence 69999999999998
No 71
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=28.69 E-value=42 Score=30.39 Aligned_cols=14 Identities=29% Similarity=0.273 Sum_probs=13.2
Q ss_pred ceEEEEeccCCCCC
Q psy8529 56 STAMIVDLDAHQFS 69 (436)
Q Consensus 56 ~rv~iiD~D~h~g~ 69 (436)
.||++||+|..+||
T Consensus 32 ~~VlliD~D~~~~~ 45 (263)
T 1hyq_A 32 HDVTIVDADITMAN 45 (263)
T ss_dssp CCEEEEECCCSSSS
T ss_pred CcEEEEECCCCCCC
Confidence 69999999999998
No 72
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=28.63 E-value=13 Score=29.44 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccC-----HHHHHHHHHHHHHHHHhcCCCE
Q psy8529 335 EAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAIS-----PQGIIRRDELVFMKARERRVPI 392 (436)
Q Consensus 335 ~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt-----~~~~~~~~~~l~~~a~~~~~~i 392 (436)
+++|..+.++|+.++=|+.++.|...+.|+|.|-+. .+...+ ..++.++.+..+
T Consensus 34 ~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~----ai~~L~~~~v~v 92 (98)
T 3ced_A 34 EPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGK----FEKELIERQVKM 92 (98)
T ss_dssp HHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHH----HHHHHHHTTCEE
T ss_pred chHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHH----HHHHHHHCCCEE
Confidence 567777888999999999999999999999988773 333333 334445556544
No 73
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}
Probab=28.23 E-value=3e+02 Score=25.05 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=35.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCCEEEE-------ecCCCcCCCCCCCCcccCHHHHHHH-HHHHHHHHHhcCCCEEEE
Q psy8529 324 YTEDQHYLEKIEAGLERSLRSFCPDIIVY-------NAGTDVLLNDPLGLLAISPQGIIRR-DELVFMKARERRVPIVML 395 (436)
Q Consensus 324 g~~d~~yl~~~~~~l~~~~~~f~Pdlivv-------saG~D~~~~Dplg~~~lt~~~~~~~-~~~l~~~a~~~~~~iv~v 395 (436)
+.=+.+.+..|.+.+..+-..-+...||+ |+|.|.-.-. ... ..+.+... .+.++.....+..|+|..
T Consensus 25 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~---~~~-~~~~~~~~~~~~~~~~l~~~~kPvIAa 100 (257)
T 2ej5_A 25 NAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVT---EEM-DHGDVLRSRYAPMMKALHHLEKPVVAA 100 (257)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-----------CHHHHHHHTHHHHHHHHHHCCSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHh---hcc-chhHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 34467777778777775533334456766 4566653211 110 12333321 222333335578999987
Q ss_pred eCC
Q psy8529 396 TSG 398 (436)
Q Consensus 396 leG 398 (436)
..|
T Consensus 101 v~G 103 (257)
T 2ej5_A 101 VNG 103 (257)
T ss_dssp ECS
T ss_pred ECc
Confidence 643
No 74
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=27.82 E-value=39 Score=29.99 Aligned_cols=24 Identities=8% Similarity=-0.002 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCC
Q psy8529 332 EKIEAGLERSLRSFCPDIIVYNAGT 356 (436)
Q Consensus 332 ~~~~~~l~~~~~~f~PdlivvsaG~ 356 (436)
..+++.+..+ .+-+.|+||+-++-
T Consensus 118 ~~l~~~l~~l-~~~~yD~viiD~pp 141 (254)
T 3kjh_A 118 SFLGSVVSAL-FLDKKEAVVMDMGA 141 (254)
T ss_dssp HHHHHHHHHH-HHTCCSEEEEEECT
T ss_pred HHHHHHHHHh-ccCCCCEEEEeCCC
Confidence 3466666554 23467999998764
No 75
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=27.73 E-value=45 Score=29.65 Aligned_cols=14 Identities=14% Similarity=0.045 Sum_probs=13.1
Q ss_pred ceEEEEeccCCCCC
Q psy8529 56 STAMIVDLDAHQFS 69 (436)
Q Consensus 56 ~rv~iiD~D~h~g~ 69 (436)
+||++||+|...|+
T Consensus 35 ~~VlliD~D~~~~~ 48 (245)
T 3ea0_A 35 IHVLAVDISLPFGD 48 (245)
T ss_dssp CCEEEEECCTTTCC
T ss_pred CCEEEEECCCCCCC
Confidence 69999999999888
No 76
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=27.49 E-value=1.4e+02 Score=29.98 Aligned_cols=51 Identities=16% Similarity=0.077 Sum_probs=33.9
Q ss_pred chHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHH
Q psy8529 327 DQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKA 385 (436)
Q Consensus 327 d~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a 385 (436)
..+....|++++. .+.+.+||+||+ +| |.. -.-.-+.+.+..+.+.+.+++
T Consensus 53 ~~d~~~~l~~ll~-~~~~~~~D~Vli-aG-Dlf-----d~~~~~~~~~~~~~~~L~r~~ 103 (431)
T 3t1i_A 53 GNDTFVTLDEILR-LAQENEVDFILL-GG-DLF-----HENKPSRKTLHTCLELLRKYC 103 (431)
T ss_dssp TTHHHHHHHHHHH-HHHHTTCSEEEE-CS-CCB-----SSSSCCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHH-HHhhcCCCEEEE-cC-ccc-----cCCCCCHHHHHHHHHHHHHHh
Confidence 3566678888776 567899999998 33 332 222346677777777776654
No 77
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=27.42 E-value=95 Score=28.66 Aligned_cols=52 Identities=15% Similarity=0.042 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCCcCCCCCCCCc----ccCH-HHHHHHHHHHHHHHHhcCCCEEEE
Q psy8529 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLL----AISP-QGIIRRDELVFMKARERRVPIVML 395 (436)
Q Consensus 336 ~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~----~lt~-~~~~~~~~~l~~~a~~~~~~iv~v 395 (436)
+.+.......+|++||+ +.|...+ .+.. +...++.+.|.+++++.+.+++++
T Consensus 137 ~~~~a~~~~~~p~llil--------Dept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~v 193 (296)
T 1cr0_A 137 AKLAYMRSGLGCDVIIL--------DHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVI 193 (296)
T ss_dssp HHHHHHHHTTCCSEEEE--------EEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHhcCCCEEEE--------cCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 33434456789999998 2222211 0233 556778888888998889988876
No 78
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=27.30 E-value=42 Score=29.73 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=16.6
Q ss_pred HHHHHHHHhhCCCceEEEEeccCCCCC
Q psy8529 43 SLLVKLLFQSKSISTAMIVDLDAHQFS 69 (436)
Q Consensus 43 a~a~~~~~~~~~~~rv~iiD~D~h~g~ 69 (436)
|+.+.+...+.| +||++||+|.. ||
T Consensus 17 a~~LA~~la~~g-~~VlliD~D~~-~~ 41 (254)
T 3kjh_A 17 AAGLIKIMASDY-DKIYAVDGDPD-SC 41 (254)
T ss_dssp HHHHHHHHTTTC-SCEEEEEECTT-SC
T ss_pred HHHHHHHHHHCC-CeEEEEeCCCC-cC
Confidence 333333334444 79999999995 88
No 79
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=26.78 E-value=6.7 Score=31.13 Aligned_cols=57 Identities=12% Similarity=0.105 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCE
Q psy8529 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPI 392 (436)
Q Consensus 336 ~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~i 392 (436)
++|..+.++|+.++=|+.++.|...+.|+|.|-+...|=..-.+...++.++.+..+
T Consensus 38 pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~v 94 (100)
T 2qsw_A 38 PIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVET 94 (100)
T ss_dssp CHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEE
T ss_pred hHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCEE
Confidence 467777889999999999999999999999887743221111222334445556543
No 80
>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein; unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=26.31 E-value=3.8e+02 Score=26.11 Aligned_cols=152 Identities=10% Similarity=0.035 Sum_probs=81.4
Q ss_pred HHHHHHHHhcCCCeEEEEEeccccc------------CccceeccccCCCEEEEEecCCCCCCCCeeEeeeCCCCCCchH
Q psy8529 262 SLLVKLLFQSKSISTAMIVDLDAHQ------------GNGYEKDFMNETRIFIMETCITSKAKEAIRCRIELAPYTEDQH 329 (436)
Q Consensus 262 AIAa~~l~~~~g~~rV~IvD~D~Hh------------GnGtq~if~~d~~V~~~SiH~~~~~~~g~~~NvpL~~g~~d~~ 329 (436)
-+|+.+|.++.+.++|+-||.|-=. -||...+-+ |.+-+..+. + ..+..+-+...-.+.....+
T Consensus 83 ~iA~~hLi~~L~~~~va~~d~d~~~Dyr~~RP~v~~~~dg~~~~~~--P~~~ly~~~-d-~~g~~~LlL~G~eP~~~w~~ 158 (351)
T 2wam_A 83 RLAAAHLKAALDTELVASFAIDELLDYRSRRPLMTFKTDHFTHSDD--PELSLYALR-D-SIGTPFLLLAGLEPDLKWER 158 (351)
T ss_dssp HHHHHHHHHHSEEEEEEEECHHHHCBTTTSCCEEEEETTEEEEECC--CCEEEEEEE-C-TTCCEEEEEEEECCSBCHHH
T ss_pred HHHHHHHHHHcCCeEEEEEechhccccccCCCcEEEEcCCceEeeC--CceEEEEec-c-CCCCcEEEEECCCChhHHHH
Confidence 4788999998888999988876321 123222221 222222121 1 12223333332233333443
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEecCCCcC--CCCCCCCc------------cc---CHHHHHHHHHHHHHHHHhcCCCE
Q psy8529 330 YLEKIEAGLERSLRSFCPDIIVYNAGTDVL--LNDPLGLL------------AI---SPQGIIRRDELVFMKARERRVPI 392 (436)
Q Consensus 330 yl~~~~~~l~~~~~~f~PdlivvsaG~D~~--~~Dplg~~------------~l---t~~~~~~~~~~l~~~a~~~~~~i 392 (436)
| -+.|..++++++.+.||.-.|+..- -..|..-+ .+ +.++-.-+.-.|...+.+.|+|.
T Consensus 159 f----a~~vl~~a~~~gV~~vvtLgglp~~vphtRp~~V~~~at~~el~~~~~~~~~~~~gp~GisglL~~~~~~~Gi~a 234 (351)
T 2wam_A 159 F----ITAVRLLAERLGVRQTIGLGTVPMAVPHTRPITMTAHSNNRELISDFQPSISEIQVPGSASNLLEYRMAQHGHEV 234 (351)
T ss_dssp H----HHHHHHHHHHTTCCEEEEEEEEEESCCTTSCCCEEEEESSGGGGTTSCCCCCSEEEECCHHHHHHHHHHHTTCCE
T ss_pred H----HHHHHHHHHHhCCCEEEEEecccCCCCCccCcceEEEECCHHHHHhcCCccCcccccccHHHHHHHHHHHcCCCE
Confidence 3 3444558889999999988888542 22343211 10 11112233345666677889998
Q ss_pred EEEe--CCCCC-----cchHHHHHHHHHHHHccCCC
Q psy8529 393 VMLT--SGGYL-----KQTARIIADSILNLADLGLI 421 (436)
Q Consensus 393 v~vl--eGGY~-----~~~~~~~~~~v~~l~~~~l~ 421 (436)
+.++ -=+|. +.++.++-+.+..++|.+++
T Consensus 235 ~~l~~~vP~Yla~~pdP~AA~alL~~L~~llgl~ip 270 (351)
T 2wam_A 235 VGFTVHVPHYLTQTDYPAAAQALLEQVAKTGSLQLP 270 (351)
T ss_dssp EEEEEEEEGGGTTSCCHHHHHHHHHHHHHHHTCCCC
T ss_pred EEEEEeCCccccCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 8774 34553 33455555666777776654
No 81
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Probab=25.16 E-value=1.1e+02 Score=28.71 Aligned_cols=111 Identities=10% Similarity=0.051 Sum_probs=54.1
Q ss_pred cccHHHHHHHHHhcCCCeEEEEEecccccCccceeccccCCC----EE-EEEecCCCCCCCCeeEeeeCCCCCCchHHHH
Q psy8529 258 YADISLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETR----IF-IMETCITSKAKEAIRCRIELAPYTEDQHYLE 332 (436)
Q Consensus 258 fNnvAIAa~~l~~~~g~~rV~IvD~D~HhGnGtq~if~~d~~----V~-~~SiH~~~~~~~g~~~NvpL~~g~~d~~yl~ 332 (436)
-+|..-.++.+++. |+.+++++-+|.-.-.-+.++....|+ |+ .+.+|-.. ....+++++.
T Consensus 16 ~~d~~~vl~~a~~~-gV~~~v~~g~~~~~~~~~~~la~~~~~~~~~v~~~~GiHP~~-------------~~~~~~~~~~ 81 (287)
T 3rcm_A 16 HDQQAAIVERALEA-GVTQMLLTGTSLAVSEQALELCQQLDASGAHLFATAGVHPHD-------------AKAWDTDSER 81 (287)
T ss_dssp TTCHHHHHHHHHHT-TEEEEEECCCSHHHHHHHHHHHHHHCTTSSSEEEEECCCGGG-------------GGGCCTTHHH
T ss_pred ccCHHHHHHHHHHc-CCeEEEEecCCHHHHHHHHHHHHhCCCCCceEEEEEEECcCc-------------cccCCHHHHH
Confidence 34555455556654 888888886665543344444444444 43 34456111 0011234444
Q ss_pred HHHHHHHHHHHHhCCCEEEEe-cCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEE
Q psy8529 333 KIEAGLERSLRSFCPDIIVYN-AGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVM 394 (436)
Q Consensus 333 ~~~~~l~~~~~~f~Pdlivvs-aG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~ 394 (436)
.+++.+ + +|.++-|- .|.|-+.... . .+.=.+.-+..+++|++.+.||++
T Consensus 82 ~l~~l~----~--~~~vvaIGEiGLD~~~~~~--~----~~~Q~~~F~~ql~lA~e~~lPv~i 132 (287)
T 3rcm_A 82 QLRLLL----S--EPRVRAVGECGLDFNRDFS--P----RPLQEKALEAQLTLAAQLRLPVFL 132 (287)
T ss_dssp HHHHHH----T--STTEEEEEEEEEETTTCSS--C----HHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHh----c--CCCeEEEEEeeeCCCcccC--c----HHHHHHHHHHHHHHHHHhCCCEEE
Confidence 444322 1 35666553 6777665321 1 111122233345566666777664
No 82
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=25.14 E-value=98 Score=31.27 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHh----cCCCEEEEeCCCCCcch
Q psy8529 332 EKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARE----RRVPIVMLTSGGYLKQT 404 (436)
Q Consensus 332 ~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~----~~~~iv~vleGGY~~~~ 404 (436)
+.+++.|..+.++|+|++|+|.... -...+|.+. ++. .++.++ .+.||+.+--.||....
T Consensus 78 ~~L~~~I~~~~~~~~P~~I~V~tTC~~e~IGdDi~-------~v~------~~~~~~~~~~~~~pVi~v~tpgf~gs~ 142 (458)
T 3pdi_B 78 ENVVEALKTICERQNPSVIGLLTTGLSETQGCDLH-------TAL------HEFRTQYEEYKDVPIVPVNTPDFSGCF 142 (458)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEEECHHHHTTCTTHH-------HHH------HHTTTSCCSCSCSCEEEECCCTTSSCH
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcHHHHhcCCHH-------HHH------HHHHHhccccCCCeEEEeeCCCcCCch
Confidence 3466667778889999988886653 444555322 222 111122 27899999999998643
No 83
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=24.61 E-value=1.1e+02 Score=31.19 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhC-CCEEEEecC-CCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy8529 333 KIEAGLERSLRSFC-PDIIVYNAG-TDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402 (436)
Q Consensus 333 ~~~~~l~~~~~~f~-PdlivvsaG-~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~ 402 (436)
.+.+.|..+.++|+ |++|+|... .....+|.+. ++. .++.++.+.||+.+---||..
T Consensus 130 kL~~~I~~~~~~~~~P~~I~V~tTC~~e~IGdDl~-------~v~------~~~~~~~~~pVi~v~tpgf~g 188 (492)
T 3u7q_A 130 KLAKLIDEVETLFPLNKGISVQSECPIGLIGDDIE-------SVS------KVKGAELSKTIVPVRCEGFRG 188 (492)
T ss_dssp HHHHHHHHHHHHCTTCCCEEEEECTHHHHTTCCHH-------HHH------HHHHHHHTCCEEEECCCTTSS
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCcHHHHHhcCHH-------HHH------HHHHHhhCCcEEEecCCCCCC
Confidence 45566667888899 998777654 3555555332 232 222334589999999999986
No 84
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=24.31 E-value=74 Score=32.43 Aligned_cols=59 Identities=14% Similarity=0.334 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcc
Q psy8529 332 EKIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 403 (436)
Q Consensus 332 ~~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~ 403 (436)
..+.+.|..+.++|+|++|+|.... -...+|.+. ++. .++.++.+.||+.+---||...
T Consensus 108 ~kL~~~I~~~~~~~~P~~I~V~tTC~~e~IGdDl~-------~v~------~~~~~~~~~pVi~v~tpgf~gs 167 (483)
T 3pdi_A 108 KRLFHAIRQAVESYSPPAVFVYNTCVPALIGDDVD-------AVC------KAAAERFGTPVIPVDSAGFYGT 167 (483)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEECCHHHHHTTCCHH-------HHH------HHHHHHHCSCEEEECCCGGGCC
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCchHHHhcCCHH-------HHH------HHHHHHhCCCEEEEeCCCcccc
Confidence 3455667778889999988775543 445555332 222 2223346899999999988864
No 85
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=24.11 E-value=2.9e+02 Score=25.83 Aligned_cols=62 Identities=15% Similarity=0.211 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy8529 328 QHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGY 400 (436)
Q Consensus 328 ~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY 400 (436)
.++...|++.++ -+.+|+-..+|+-.|-.+..++ +-...+.+.+..+ .+.|.++|+|.+||-
T Consensus 8 ~~~~~~~~~a~p-yi~~~~~k~iVIKlGGs~l~~~---------~~~~~~~~~i~~l-~~~G~~vVlVhGgG~ 69 (300)
T 2buf_A 8 AQVAKVLSEALP-YIRRFVGKTLVIKYGGNAMESE---------ELKAGFARDVVLM-KAVGINPVVVHGGGP 69 (300)
T ss_dssp HHHHHHHHHHHH-HHHHHTTCEEEEEECCTTTTSS---------HHHHHHHHHHHHH-HHTTCEEEEEECCCH
T ss_pred HHHHHHHHHHhH-HHHHhcCCeEEEEECchhhCCc---------hHHHHHHHHHHHH-HHCCCeEEEEECCcH
Confidence 367788888765 6888998899999998776553 2344445555444 335778999998854
No 86
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=24.08 E-value=1.5e+02 Score=28.92 Aligned_cols=65 Identities=12% Similarity=0.207 Sum_probs=33.7
Q ss_pred EEEEEecccccCccceeccccCCCEEEEEecCCCCCCCCeeEeeeCCCCCCchHHHHHHHHHHHHHHHHhCCCEEEEe
Q psy8529 276 TAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYN 353 (436)
Q Consensus 276 rV~IvD~D~HhGnGtq~if~~d~~V~~~SiH~~~~~~~g~~~NvpL~~g~~d~~yl~~~~~~l~~~~~~f~Pdlivvs 353 (436)
...+|-.--|.+.--.++|.++=.+ ...-+++|+ +.++ -.+-....-.-+.+++++++||+|++.
T Consensus 37 ~~~~~~tgqh~~~~~~~~~~~~~~i----------~~~~~~l~~--~~~~-~~~~~~~~~~~l~~~l~~~kPD~Vlv~ 101 (385)
T 4hwg_A 37 KHILVHTGQNYAYELNQVFFDDMGI----------RKPDYFLEV--AADN-TAKSIGLVIEKVDEVLEKEKPDAVLFY 101 (385)
T ss_dssp EEEEEECSCHHHHHHTHHHHC-CCC----------CCCSEECCC--CCCC-SHHHHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred CEEEEEeCCCCChhHHHHHHhhCCC----------CCCceecCC--CCCC-HHHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3445666677654444555432111 011233443 2232 233443333446678999999999985
No 87
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=23.77 E-value=50 Score=30.67 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=12.8
Q ss_pred ceEEEEeccCCCCC
Q psy8529 56 STAMIVDLDAHQFS 69 (436)
Q Consensus 56 ~rv~iiD~D~h~g~ 69 (436)
.||++||+|..+++
T Consensus 34 ~~VlliD~D~~q~~ 47 (286)
T 2xj4_A 34 AKVAVIDLDLRQRT 47 (286)
T ss_dssp CCEEEEECCTTTCH
T ss_pred CcEEEEECCCCCCC
Confidence 69999999998887
No 88
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=23.46 E-value=7.7 Score=30.81 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=39.2
Q ss_pred HHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCE
Q psy8529 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPI 392 (436)
Q Consensus 336 ~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~i 392 (436)
++|..+.++|+.++=|+.++.|...+.|+|.|-+.-.|=..-.+...++.++.+..+
T Consensus 38 pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~v 94 (101)
T 2qrr_A 38 PLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKV 94 (101)
T ss_dssp CHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEE
T ss_pred hHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCCEE
Confidence 467778889999999999999999999999887743221111222334445556543
No 89
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=23.15 E-value=2.6e+02 Score=25.61 Aligned_cols=67 Identities=15% Similarity=0.117 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHhC--CCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCC-CEEEEeCCCCCc
Q psy8529 329 HYLEKIEAGLERSLRSFC--PDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRV-PIVMLTSGGYLK 402 (436)
Q Consensus 329 ~yl~~~~~~l~~~~~~f~--PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~-~iv~vleGGY~~ 402 (436)
.+.+.+.+.+..++++|+ |+.|++..+ ..|.+. .+...+....+.+.+..++.+. .+|++...+|+.
T Consensus 94 ~~~~~~~~~w~~ia~~y~~~~~~v~~el~-----NEP~~~--~~~~~~~~~~~~~~~~IR~~d~~~~i~v~~~~~~~ 163 (294)
T 2whl_A 94 SDLNRAVDYWIEMKDALIGKEDTVIINIA-----NEWYGS--WDGSAWADGYIDVIPKLRDAGLTHTLMVDAAGWGQ 163 (294)
T ss_dssp HHHHHHHHHHHHTHHHHTTCTTTEEEECC-----TTCCCS--SCHHHHHHHHHHHHHHHHHTTCCSCEEEECBTTTT
T ss_pred hhHHHHHHHHHHHHHHHcCCCCeEEEEec-----CCCCCC--CChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCCCC
Confidence 445556666666777885 455556544 677764 4555555555556666666544 344554445554
No 90
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}
Probab=23.08 E-value=3.9e+02 Score=24.38 Aligned_cols=74 Identities=11% Similarity=0.071 Sum_probs=37.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCCEEEE-------ecCCCcCCCCCCCC-cccCHHHHHHH---HHHHHHHHHhcCCCE
Q psy8529 324 YTEDQHYLEKIEAGLERSLRSFCPDIIVY-------NAGTDVLLNDPLGL-LAISPQGIIRR---DELVFMKARERRVPI 392 (436)
Q Consensus 324 g~~d~~yl~~~~~~l~~~~~~f~Pdlivv-------saG~D~~~~Dplg~-~~lt~~~~~~~---~~~l~~~a~~~~~~i 392 (436)
+.=+.+.+..|.+.+..+-..-....||+ |+|.|...-..... ..-+.+.+... .+.++.....+..|+
T Consensus 28 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 107 (263)
T 3l3s_A 28 HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPT 107 (263)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSHHHHHHHHHHHHHHHHHHHTCSSCE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccccccHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 34477888888887775432222345554 67777754332210 01122322222 222333334578899
Q ss_pred EEEeC
Q psy8529 393 VMLTS 397 (436)
Q Consensus 393 v~vle 397 (436)
|....
T Consensus 108 IAav~ 112 (263)
T 3l3s_A 108 IALVE 112 (263)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 98764
No 91
>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*
Probab=23.03 E-value=66 Score=29.82 Aligned_cols=106 Identities=14% Similarity=0.161 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCCCeEEEEEecccccCccceeccccCCCEEEEEecCCCCCCCCeeEeeeCCCCCCchHHHHHHHHHHHHH
Q psy8529 262 SLLVKLLFQSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERS 341 (436)
Q Consensus 262 AIAa~~l~~~~g~~rV~IvD~D~HhGnGtq~if~~d~~V~~~SiH~~~~~~~g~~~NvpL~~g~~d~~yl~~~~~~l~~~ 341 (436)
|||.+.+++ |. +|.++|.+.-...-.+++-...+++.++.. ..+|++- .++.+..+
T Consensus 22 aia~~la~~--Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~------------------Dv~~~~~---v~~~v~~~ 77 (258)
T 4gkb_A 22 AISMRLAEE--RA-IPVVFARHAPDGAFLDALAQRQPRATYLPV------------------ELQDDAQ---CRDAVAQT 77 (258)
T ss_dssp HHHHHHHHT--TC-EEEEEESSCCCHHHHHHHHHHCTTCEEEEC------------------CTTCHHH---HHHHHHHH
T ss_pred HHHHHHHHc--CC-EEEEEECCcccHHHHHHHHhcCCCEEEEEe------------------ecCCHHH---HHHHHHHH
Confidence 666665543 54 788888764432212222222334443321 2344432 22334455
Q ss_pred HHHh-CCCEEEEecCCCcCCCCCCCCcccCHHHHHH-----------HHHHHHHHHHhcCCCEEEEe
Q psy8529 342 LRSF-CPDIIVYNAGTDVLLNDPLGLLAISPQGIIR-----------RDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 342 ~~~f-~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~-----------~~~~l~~~a~~~~~~iv~vl 396 (436)
.++| +.|++|-.||.- ...+ +..+++.|.+ +++.+....++.++.||.+-
T Consensus 78 ~~~~G~iDiLVNnAGi~--~~~~---~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnis 139 (258)
T 4gkb_A 78 IATFGRLDGLVNNAGVN--DGIG---LDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNIS 139 (258)
T ss_dssp HHHHSCCCEEEECCCCC--CCCC---TTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHhCCCCEEEECCCCC--CCCC---ccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 6677 689999999963 2222 4567776654 33333333344577887763
No 92
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=22.71 E-value=1e+02 Score=26.59 Aligned_cols=46 Identities=11% Similarity=0.166 Sum_probs=29.1
Q ss_pred CCCEEEEec---CCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 346 CPDIIVYNA---GTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 346 ~Pdlivvsa---G~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
+|++||+-. +.|.. +...-..+.+.++.+.+.+++++.+.+++++-
T Consensus 105 ~~~lliiD~~~~~l~~~-----~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~ 153 (220)
T 2cvh_A 105 NFALVVVDSITAHYRAE-----ENRSGLIAELSRQLQVLLWIARKHNIPVIVIN 153 (220)
T ss_dssp TEEEEEEECCCCCTTGG-----GGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEcCcHHHhhhc-----CchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 699999832 22221 11112235666777778888988899988774
No 93
>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}
Probab=22.69 E-value=4e+02 Score=24.04 Aligned_cols=87 Identities=15% Similarity=0.133 Sum_probs=47.3
Q ss_pred CCCEEEEEecCCCCCCCCeeEeeeCCCCCCchHHHHHHHHHHHHHHHHhCCCEEEE-------ecCCCcCCCCCCCCccc
Q psy8529 297 ETRIFIMETCITSKAKEAIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVY-------NAGTDVLLNDPLGLLAI 369 (436)
Q Consensus 297 d~~V~~~SiH~~~~~~~g~~~NvpL~~g~~d~~yl~~~~~~l~~~~~~f~Pdlivv-------saG~D~~~~Dplg~~~l 369 (436)
++.|.+|.+. =|=+.+.=+.+.+..|.+.+..+-..-.-..||+ ++|.|...- +...-
T Consensus 7 ~dgVa~itln------------rP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~---~~~~~ 71 (254)
T 3hrx_A 7 QDGVLVLTLN------------RPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEF---GDRKP 71 (254)
T ss_dssp ETTEEEEEEC------------CGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGT---TTSCC
T ss_pred ECCEEEEEEc------------CCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHh---cccch
Confidence 4557776663 2222234467788888887776533233335665 456665432 22222
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy8529 370 SPQGIIRRDELVFMKARERRVPIVMLTSG 398 (436)
Q Consensus 370 t~~~~~~~~~~l~~~a~~~~~~iv~vleG 398 (436)
....+....+.+......+..|+|....|
T Consensus 72 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G 100 (254)
T 3hrx_A 72 DYEAHLRRYNRVVEALSGLEKPLVVAVNG 100 (254)
T ss_dssp CHHHHTHHHHHHHHHHHTCSSCEEEEECS
T ss_pred hhHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 33444444444444445678899988754
No 94
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=22.53 E-value=1.3e+02 Score=29.93 Aligned_cols=70 Identities=6% Similarity=0.080 Sum_probs=43.8
Q ss_pred eeCCCCCCc-hHHHHHHHHHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeC
Q psy8529 319 IELAPYTED-QHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTS 397 (436)
Q Consensus 319 vpL~~g~~d-~~yl~~~~~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vle 397 (436)
|||-..+.+ .++...|++.+ |-+.+|+-..|||-.|-.+..++ ....+.+.+..+ .+.|.++|+|.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~-~yi~~~~~~~iViK~GG~~l~~~----------~~~~~~~~i~~l-~~~g~~vvlVhg 82 (456)
T 3d2m_A 15 VPRGSHMNAPDSFVAHFREAA-PYIRQMRGTTLVAGIDGRLLEGG----------TLNKLAADIGLL-SQLGIRLVLIHG 82 (456)
T ss_dssp ----------CCHHHHHHHHH-HHHHHHTTCEEEEEECGGGGTST----------HHHHHHHHHHHH-HHTTCEEEEEEC
T ss_pred CcCcccCCchhHHHHHHHHhH-HHHHHhcCCEEEEEEChHHhcCc----------hHHHHHHHHHHH-HHCCCeEEEEeC
Confidence 344433433 67889998876 46899998999999998776532 134444444443 345778999998
Q ss_pred CCC
Q psy8529 398 GGY 400 (436)
Q Consensus 398 GGY 400 (436)
||-
T Consensus 83 gg~ 85 (456)
T 3d2m_A 83 AYH 85 (456)
T ss_dssp CHH
T ss_pred CcH
Confidence 883
No 95
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=22.51 E-value=2.8e+02 Score=24.62 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=39.1
Q ss_pred HHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCcchHHHH-HHHHHHH
Q psy8529 340 RSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII-ADSILNL 415 (436)
Q Consensus 340 ~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~~~~~~~-~~~v~~l 415 (436)
.+++++.-.+.-+.+.++. .+| .+...+..+..+++|+++|.+.|.+..|....+..+.+ .+.+..+
T Consensus 58 ~~~~~~gl~~~~~~~~~~~--~~~-------~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~l~~l 125 (272)
T 2q02_A 58 NLAEKYGLEIVTINAVYPF--NQL-------TEEVVKKTEGLLRDAQGVGARALVLCPLNDGTIVPPEVTVEAIKRL 125 (272)
T ss_dssp HHHHHTTCEEEEEEEETTT--TSC-------CHHHHHHHHHHHHHHHHHTCSEEEECCCCSSBCCCHHHHHHHHHHH
T ss_pred HHHHHcCCeEEechhhhcc--CCc-------HHHHHHHHHHHHHHHHHhCCCEEEEccCCCchhHHHHHHHHHHHHH
Confidence 4567787777666655431 111 23344555677888999999998886554433333334 4444443
No 96
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=22.16 E-value=11 Score=30.31 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCC
Q psy8529 336 AGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391 (436)
Q Consensus 336 ~~l~~~~~~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~ 391 (436)
.+|..+.++|+.++=|+.++.|...+.|+|.|-+...|=.+-.+...++.++.+..
T Consensus 36 PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~ 91 (106)
T 3dhx_A 36 PLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVK 91 (106)
T ss_dssp CHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCE
T ss_pred hHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCCE
Confidence 46777888999999999999999999999988664332111122233444555653
No 97
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=21.83 E-value=56 Score=29.63 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=11.6
Q ss_pred ceEEEEeccCCCCC
Q psy8529 56 STAMIVDLDAHQFS 69 (436)
Q Consensus 56 ~rv~iiD~D~h~g~ 69 (436)
.||++||+|. +|+
T Consensus 36 ~~VlliD~D~-~~~ 48 (257)
T 1wcv_1 36 KRVLLVDLDP-QGN 48 (257)
T ss_dssp CCEEEEECCT-TCH
T ss_pred CCEEEEECCC-CcC
Confidence 6999999998 577
No 98
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=21.77 E-value=1.6e+02 Score=30.40 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC-CcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy8529 333 KIEAGLERSLRSFCPDIIVYNAGT-DVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYLK 402 (436)
Q Consensus 333 ~~~~~l~~~~~~f~PdlivvsaG~-D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~~ 402 (436)
.|.+.|..+.++|+|++|+|.... -...+|. .+++. .++.++.+.|++.+---||..
T Consensus 121 kL~~aI~~~~~~~~P~~I~V~tTC~~eiIGdD-------i~~v~------~~~~~~~~~pVi~v~tpGf~g 178 (533)
T 1mio_A 121 KLKDAIHEAYEMFHPAAIGVYATCPVGLIGDD-------ILAVA------ATASKEIGIPVHAFSCEGYKG 178 (533)
T ss_dssp HHHHHHHHHHHHTCCSEEEECCCHHHHHHTCC-------HHHHH------HHHHHHHSSCEEECCCCTTSS
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCHHHHhcCC-------HHHHH------HHHHHhhCCcEEEEeCCCCcC
Confidence 466677778889999998886543 3333332 22222 222334588999999898886
No 99
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=21.48 E-value=2.1e+02 Score=26.25 Aligned_cols=63 Identities=22% Similarity=0.219 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHH-HhCCCEEEEecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy8529 329 HYLEKIEAGLERSLR-SFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLTSGGYL 401 (436)
Q Consensus 329 ~yl~~~~~~l~~~~~-~f~PdlivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vleGGY~ 401 (436)
+-...+++++..+.+ ..+||+||+ +| |.... -+.+.|..+.+.+..+.++.+.|++++. |.-+
T Consensus 48 ~~~~~l~~~l~~i~~~~~~~d~vi~-~G-Dl~~~-------~~~~~~~~~~~~l~~l~~~~~~pv~~v~-GNHD 111 (330)
T 3ib7_A 48 DADDRLGELLEQLNQSGLRPDAIVF-TG-DLADK-------GEPAAYRKLRGLVEPFAAQLGAELVWVM-GNHD 111 (330)
T ss_dssp CHHHHHHHHHHHHHHHTCCCSEEEE-CS-CCBTT-------CCHHHHHHHHHHHHHHHHHHTCEEEECC-CTTS
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEE-CC-CCCCC-------CCHHHHHHHHHHHHHHHhhcCCCEEEeC-CCCC
Confidence 345667777764333 268999887 23 33211 1256777777777766666788977665 5444
No 100
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=21.11 E-value=71 Score=30.00 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=13.0
Q ss_pred ceEEEEeccCCCCC
Q psy8529 56 STAMIVDLDAHQFS 69 (436)
Q Consensus 56 ~rv~iiD~D~h~g~ 69 (436)
+||++||+|...++
T Consensus 122 ~rVLLID~D~~~~~ 135 (286)
T 3la6_A 122 KRVLLIDCDMRKGY 135 (286)
T ss_dssp CCEEEEECCTTTCC
T ss_pred CCEEEEeccCCCCC
Confidence 69999999999887
No 101
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=20.39 E-value=1.3e+02 Score=27.56 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCc
Q psy8529 335 EAGLERSLRSFCPDIIVYNAGTDV 358 (436)
Q Consensus 335 ~~~l~~~~~~f~PdlivvsaG~D~ 358 (436)
.+.|..++++++||+|+.-.+.|.
T Consensus 86 ~~~l~~~ir~~~PdvV~t~~~~d~ 109 (242)
T 2ixd_A 86 IREIVKVIRTYKPKLVFAPYYEDR 109 (242)
T ss_dssp HHHHHHHHHHHCCSEEEEECSCSS
T ss_pred HHHHHHHHHHcCCCEEEECCCCCC
Confidence 345556888999999987555443
No 102
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}
Probab=20.32 E-value=4.6e+02 Score=23.83 Aligned_cols=74 Identities=9% Similarity=0.187 Sum_probs=37.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCCEEEE-------ecCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q psy8529 324 YTEDQHYLEKIEAGLERSLRSFCPDIIVY-------NAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPIVMLT 396 (436)
Q Consensus 324 g~~d~~yl~~~~~~l~~~~~~f~Pdlivv-------saG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~a~~~~~~iv~vl 396 (436)
+.=+.+.+..|.+.+..+-.+-....||+ ++|.|...-.....-. ....+....+.++.....+..|+|...
T Consensus 27 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~kPvIAav 105 (261)
T 3pea_A 27 NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAK-QATELAQLGQVTFERVEKCSKPVIAAI 105 (261)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTTCCHH-HHHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhcCchh-HHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 34467788888887775433333346665 4566654322111100 011233333334444456788999876
Q ss_pred CC
Q psy8529 397 SG 398 (436)
Q Consensus 397 eG 398 (436)
.|
T Consensus 106 ~G 107 (261)
T 3pea_A 106 HG 107 (261)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 103
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=20.30 E-value=68 Score=28.94 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=12.4
Q ss_pred eEEEEEecccccCc
Q psy8529 275 STAMIVDLDAHQGN 288 (436)
Q Consensus 275 ~rV~IvD~D~HhGn 288 (436)
+||++||+|...|+
T Consensus 32 ~~VlliD~D~~~~~ 45 (263)
T 1hyq_A 32 HDVTIVDADITMAN 45 (263)
T ss_dssp CCEEEEECCCSSSS
T ss_pred CcEEEEECCCCCCC
Confidence 69999999998775
No 104
>2w9x_A AXE2A, CJCE2B, putative acetyl xylan esterase; carbohydrate esterase family 2, hydrolase; 2.00A {Cellvibrio japonicus}
Probab=20.23 E-value=1.2e+02 Score=29.16 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=30.5
Q ss_pred HhCCCEEEEecCC-CcCCCCCCCC----cccCHHHHHHHHHHHHHHHHhc--CCCEEEEe
Q psy8529 344 SFCPDIIVYNAGT-DVLLNDPLGL----LAISPQGIIRRDELVFMKARER--RVPIVMLT 396 (436)
Q Consensus 344 ~f~PdlivvsaG~-D~~~~Dplg~----~~lt~~~~~~~~~~l~~~a~~~--~~~iv~vl 396 (436)
.++||+|+|..|. |....-+.+. ...+.+.|....+.+.+.+++. +.+|+++.
T Consensus 234 ~~~Pd~VvI~lGtND~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ir~~~p~a~Iil~~ 293 (366)
T 2w9x_A 234 HWKPQVIVIGLGTNDFSTALNDNERWKTREALHADYVANYVKFVKQLHSNNARAQFILMN 293 (366)
T ss_dssp TCCCSEEEEECCHHHHSSCCCTTSSCCSHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred cCCCCEEEEeCccCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 4799999999999 7554322121 0011355665555555666554 34666554
No 105
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=20.19 E-value=95 Score=28.06 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCcC
Q psy8529 335 EAGLERSLRSFCPDIIVYNAGTDVL 359 (436)
Q Consensus 335 ~~~l~~~~~~f~PdlivvsaG~D~~ 359 (436)
.+.|..++++++||+|+.-.+.|.|
T Consensus 84 ~~~l~~~ir~~~P~~V~t~~~~d~H 108 (227)
T 1uan_A 84 RLKLAQALRRLRPRVVFAPLEADRH 108 (227)
T ss_dssp HHHHHHHHHHHCEEEEEEECSCCSS
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCCC
Confidence 3455568899999999876554433
No 106
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=20.02 E-value=1.2e+02 Score=26.31 Aligned_cols=35 Identities=17% Similarity=0.396 Sum_probs=22.1
Q ss_pred eEeeeCCCCCCchHHHHHHHHHHHHHHHHhCCCEEEEec
Q psy8529 316 RCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNA 354 (436)
Q Consensus 316 ~~NvpL~~g~~d~~yl~~~~~~l~~~~~~f~Pdlivvsa 354 (436)
++||- |..+.......+. |...+++.+||+|.+|=
T Consensus 18 s~Ni~---g~~~~~~~~r~~~-i~~~i~~~~pDIi~LQE 52 (256)
T 4fva_A 18 SWNID---GLDGRSLLTRMKA-VAHIVKNVNPDILFLQE 52 (256)
T ss_dssp EEECC---TTCCTTHHHHHHH-HHHHHHHHCCSEEEEEE
T ss_pred EEecC---CCCCcCHHHHHHH-HHHHHHHcCCCEEEEEe
Confidence 45662 3434444455544 44578899999999984
Done!