RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8529
(436 letters)
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
63363]}
Length = 372
Score = 106 bits (265), Expect = 4e-26
Identities = 67/326 (20%), Positives = 123/326 (37%), Gaps = 35/326 (10%)
Query: 112 PIVYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSE 171
++ +Y + + K HP + + + I + +I+ + ++
Sbjct: 4 KLIGTLDYGKYRY--PKNHPLKIPRVSLLLRFK--------DAMNLIDEKELIKSRPATK 53
Query: 172 EQLLIAHTEKYLKSLKWSFNVAAISEVCPL---VAVPNYFVQKCYLRPMRYHVGGTLEAG 228
E+LL+ HTE Y+ +L + + + + V G T++A
Sbjct: 54 EELLLFHTEDYINTLMEAERCQCVPKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAI 113
Query: 229 FLALRRGWSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQGN 288
L+ + N GG HHA +++ GFC + ++ ++ L + K + +DLDAH +
Sbjct: 114 EEFLKGNVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRK-KGFKRILYIDLDAHHCD 172
Query: 289 GYEKDFMNETRIFIM----------------ETCITSKAKEAIRCRIELAPYTEDQHYLE 332
G ++ F + ++F++ I + I L D +L
Sbjct: 173 GVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLF 232
Query: 333 KIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVPI 392
+E LE F P++ + GTD LL D L +S ++ +V RE
Sbjct: 233 ALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIV----REVFGEG 288
Query: 393 VMLTSGGY-LKQTARIIADSILNLAD 417
V L GGY AR L+
Sbjct: 289 VYLGGGGYHPYALARAWTLIWCELSG 314
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 364
Score = 104 bits (261), Expect = 1e-25
Identities = 70/343 (20%), Positives = 129/343 (37%), Gaps = 45/343 (13%)
Query: 114 VYRPEYNVHFFKLEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQ 173
+Y PEY + K+ + + + Q I++P+ S E+
Sbjct: 6 IYSPEY----VSMCDSLAKIPKRASMVHSLI--------EAYALHKQMRIVKPKVASMEE 53
Query: 174 LLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPNYFVQKCYLRPMRYH----VGGTLEAGF 229
+ HT+ YL+ L+ V+ + ++ C + +GG
Sbjct: 54 MATFHTDAYLQHLQ---KVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATITAA 110
Query: 230 LALRRGW---SINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQ 286
L G +IN GG+HHA + + GFC D L + L + + VDLD H
Sbjct: 111 QCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRK--FERILYVDLDLHH 168
Query: 287 GNGYEKDFMNETRIFIM---------------ETCITSKAKEAIRCRIELAPYTEDQHYL 331
G+G E F +++ + + + + + +D+ Y
Sbjct: 169 GDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYY 228
Query: 332 EKIEAGLERSLRSFCPDIIVYNAGTDVLLNDPLGLLAISPQGIIRRDELVFMKARERRVP 391
+ E+ L+ ++F P +V G D + DP+ ++P GI + + + + ++
Sbjct: 229 QICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYI----LQWQLA 284
Query: 392 IVMLTSGGY-LKQTARIIADSILNLADLGLISR-PYNIWFIYY 432
++L GGY L TAR + L S P + +F Y
Sbjct: 285 TLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAY 327
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 90.4 bits (223), Expect = 2e-20
Identities = 59/362 (16%), Positives = 111/362 (30%), Gaps = 57/362 (15%)
Query: 113 IVYRPEYNVHFFKL--EKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVS 170
++Y H HP + + + I++ L E +Q + ++ S
Sbjct: 8 LIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRL--------QERGLRSQCECLRGRKAS 59
Query: 171 EEQLLIAHTEKYLKSLKWSFNVAAISEVCPLVAVPN------------------YFVQKC 212
E+L H+E+++ + + L + + +
Sbjct: 60 LEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELH 119
Query: 213 YLRPMRYHVGGTLEAGFLALRRG---WSINIGGGFHHASETKGGGFCAYADISLLVKLLF 269
R+ G + F R + HHA + GFC + +++ + L
Sbjct: 120 SSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQ 179
Query: 270 QSKSISTAMIVDLDAHQGNGYEKDFMNETRIFIM---------ETCITSKAKE------- 313
Q S +IVD D H GNG ++ F + + + + E
Sbjct: 180 QQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGE 239
Query: 314 ----AIRCRIELAPYTEDQHYLEKIEAGLERSLRSFCPDIIVYNAGTDVLLND--PLGLL 367
+ L P D YL + R F PD+++ +AG D PLG
Sbjct: 240 GFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGY 299
Query: 368 AISPQGIIRRDELVFMKARERRVPIVMLTSGGY-LKQTARIIADSILNLADLGLISRPYN 426
+S + + + +V+ GG+ L + L +
Sbjct: 300 HVSAKCFGYMTQQL---MNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEE 356
Query: 427 IW 428
W
Sbjct: 357 GW 358
Score = 26.8 bits (58), Expect = 5.0
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 17 WSINIGGGFHHASETKGGGFCAYADISLLVKLLFQSKSISTAMIVDLDAHQFS 69
+ HHA + GFC + +++ + L Q S +IVD D H +
Sbjct: 146 GFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGN 198
>d1b4ua_ a.88.1.1 (A:) LigA subunit of an aromatic-ring-opening
dioxygenase LigAB {Sphingomonas paucimobilis, formerly
Pseudomonas paucimobilis [TaxId: 13689]}
Length = 132
Score = 29.3 bits (66), Expect = 0.46
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 86 EFLKERKALEDE--ITSEPQESVVTRPWPIVYRPEYNVHFFKLEKLHPFDSKKWKHI 140
F + A DE +T + +V+ R + + + + L KL D K ++
Sbjct: 45 RFKADESAYLDEWNLTPAAKAAVLARDYNAMID--EGGNVYFLSKLFSTDGKSFQFA 99
>d1jnra3 d.168.1.1 (A:257-401) Adenylylsulfate reductase A subunit
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 145
Score = 27.4 bits (61), Expect = 2.0
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 126 LEKLHPFDSKKWKHIFNYLWKHIFNYLVEAKFITQDNIIEPQEVSEEQLLIAHTEKYL 183
L +L D KK KHI+ ++ + V + I+PQE E A E Y+
Sbjct: 84 LAELAGGDKKKLKHIYEEAFEDFLDMTVSQALLWACQNIDPQEQPSE---AAPAEPYI 138
>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus
halodurans [TaxId: 86665]}
Length = 118
Score = 25.6 bits (56), Expect = 5.8
Identities = 10/68 (14%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 338 LERSLRSFCPDIIVYNAGTDVL-----LNDP-LGLLAISPQGIIRRDELVFMKARERRVP 391
++ L ++ V+ +G+ L+ L +++ + L +K + ++
Sbjct: 18 IQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPS 77
Query: 392 IVMLTSGG 399
+++LT+G
Sbjct: 78 VLILTTGR 85
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 390
Score = 26.7 bits (58), Expect = 5.9
Identities = 9/67 (13%), Positives = 16/67 (23%), Gaps = 13/67 (19%)
Query: 86 EFLKERKALEDEITSEPQESVVTRPWPIVYRPEY-----NVHFFKLEKLHPFDSKKWKHI 140
EF + L ++ RP + + K E L + K +
Sbjct: 39 EFQAQFADL--------LKNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQV 90
Query: 141 FNYLWKH 147
Sbjct: 91 LGQALLA 97
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.422
Gapped
Lambda K H
0.267 0.0446 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,687,520
Number of extensions: 80291
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 13
Length of query: 436
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 348
Effective length of database: 1,199,356
Effective search space: 417375888
Effective search space used: 417375888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.3 bits)