Query psy853
Match_columns 314
No_of_seqs 189 out of 666
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 21:17:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy853.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/853hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05978 UNC-93: Ion channel r 100.0 4.9E-34 1.1E-38 248.7 7.6 144 158-311 1-156 (156)
2 KOG3097|consensus 100.0 1.3E-29 2.8E-34 242.4 5.9 156 148-305 24-182 (390)
3 KOG3098|consensus 99.9 5.5E-27 1.2E-31 234.5 4.8 155 148-312 4-170 (461)
4 KOG3097|consensus 99.3 2E-13 4.2E-18 131.7 -0.1 201 15-250 167-383 (390)
5 PF13347 MFS_2: MFS/sugar tran 98.0 7.3E-05 1.6E-09 73.3 12.3 120 187-309 263-387 (428)
6 TIGR02332 HpaX 4-hydroxyphenyl 97.9 6.7E-05 1.5E-09 73.5 9.2 144 152-305 7-157 (412)
7 TIGR00891 2A0112 putative sial 97.8 5.2E-05 1.1E-09 71.5 8.1 143 152-304 11-160 (405)
8 PRK10213 nepI ribonucleoside t 97.8 0.0001 2.2E-09 71.8 9.5 104 191-304 62-168 (394)
9 TIGR00895 2A0115 benzoate tran 97.8 5.1E-05 1.1E-09 71.1 7.2 104 190-303 291-397 (398)
10 PF07690 MFS_1: Major Facilita 97.8 3.1E-05 6.8E-10 71.5 5.0 102 193-304 41-145 (352)
11 cd06174 MFS The Major Facilita 97.8 6.4E-05 1.4E-09 68.7 7.0 107 190-306 40-149 (352)
12 PRK03545 putative arabinose tr 97.7 8.5E-05 1.8E-09 71.4 7.7 101 193-303 53-156 (390)
13 TIGR01299 synapt_SV2 synaptic 97.7 0.00013 2.8E-09 78.1 9.3 105 189-303 207-314 (742)
14 TIGR00879 SP MFS transporter, 97.7 5.7E-05 1.2E-09 72.1 5.9 102 189-300 76-183 (481)
15 PRK10133 L-fucose transporter; 97.6 0.00026 5.6E-09 70.4 9.1 143 151-303 24-176 (438)
16 TIGR00895 2A0115 benzoate tran 97.6 0.00027 5.8E-09 66.2 8.5 102 193-304 61-165 (398)
17 PRK10406 alpha-ketoglutarate t 97.5 0.00047 1E-08 67.6 9.9 100 190-299 69-179 (432)
18 TIGR00710 efflux_Bcr_CflA drug 97.5 0.00033 7.2E-09 65.9 8.4 106 189-304 45-153 (385)
19 PRK03633 putative MFS family t 97.5 0.00021 4.6E-09 68.6 6.9 141 153-303 6-153 (381)
20 PLN00028 nitrate transmembrane 97.5 0.00042 9.1E-09 69.4 9.0 136 153-300 36-179 (476)
21 PRK12382 putative transporter; 97.5 0.00029 6.2E-09 67.6 7.2 102 191-302 58-170 (392)
22 TIGR00885 fucP L-fucose:H+ sym 97.5 0.00034 7.4E-09 68.9 7.9 108 189-306 43-156 (410)
23 PRK11646 multidrug resistance 97.5 0.00043 9.3E-09 67.5 8.5 93 202-304 64-159 (400)
24 cd06174 MFS The Major Facilita 97.5 0.0014 3E-08 59.9 11.2 142 154-305 176-326 (352)
25 KOG2533|consensus 97.4 0.00039 8.5E-09 71.2 8.2 109 187-305 84-195 (495)
26 PRK09874 drug efflux system pr 97.4 0.00051 1.1E-08 65.5 8.2 102 191-303 61-165 (408)
27 PRK12307 putative sialic acid 97.4 0.00036 7.8E-09 67.4 7.1 103 189-301 58-163 (426)
28 TIGR00893 2A0114 d-galactonate 97.4 0.00029 6.2E-09 65.2 6.1 106 189-304 34-142 (399)
29 PRK11551 putative 3-hydroxyphe 97.4 0.00085 1.8E-08 64.4 9.5 99 193-301 59-160 (406)
30 TIGR00886 2A0108 nitrite extru 97.4 0.00036 7.8E-09 65.5 6.8 140 154-304 2-150 (366)
31 TIGR00900 2A0121 H+ Antiporter 97.4 0.0014 3.1E-08 60.5 10.6 101 194-304 257-361 (365)
32 PRK05122 major facilitator sup 97.4 0.00064 1.4E-08 65.2 8.5 105 190-304 57-172 (399)
33 TIGR00893 2A0114 d-galactonate 97.4 0.0019 4.1E-08 59.8 11.3 59 235-304 313-371 (399)
34 TIGR00902 2A0127 phenyl propri 97.4 0.0011 2.4E-08 63.8 10.1 103 191-304 243-353 (382)
35 PRK03893 putative sialic acid 97.4 0.00057 1.2E-08 67.5 8.2 141 152-302 19-166 (496)
36 PRK10504 putative transporter; 97.4 0.00065 1.4E-08 66.9 8.3 142 153-304 10-158 (471)
37 PF07690 MFS_1: Major Facilita 97.3 0.00091 2E-08 61.7 8.4 98 190-297 249-352 (352)
38 PRK11663 regulatory protein Uh 97.3 0.00098 2.1E-08 65.6 9.1 102 192-303 66-170 (434)
39 PRK09556 uhpT sugar phosphate 97.3 0.00025 5.3E-09 70.5 4.8 98 192-299 72-177 (467)
40 PRK10054 putative transporter; 97.3 0.00068 1.5E-08 66.0 7.8 141 154-304 8-156 (395)
41 PRK15075 citrate-proton sympor 97.3 0.00098 2.1E-08 65.4 8.7 96 198-303 70-176 (434)
42 TIGR00890 2A0111 Oxalate/Forma 97.3 0.0036 7.8E-08 58.0 11.7 103 192-304 248-355 (377)
43 TIGR00805 oat sodium-independe 97.2 0.00084 1.8E-08 70.4 7.7 101 195-305 79-233 (633)
44 PRK09705 cynX putative cyanate 97.2 0.0009 1.9E-08 64.9 7.3 103 188-301 48-153 (393)
45 PRK10077 xylE D-xylose transpo 97.2 0.0013 2.8E-08 64.6 8.3 106 189-304 60-180 (479)
46 TIGR00711 efflux_EmrB drug res 97.2 0.0009 2E-08 65.5 7.1 103 191-303 44-149 (485)
47 TIGR00901 2A0125 AmpG-related 97.2 0.00069 1.5E-08 64.0 5.9 84 197-290 258-355 (356)
48 PRK10429 melibiose:sodium symp 97.2 0.0047 1E-07 61.7 12.0 106 197-305 279-392 (473)
49 TIGR00894 2A0114euk Na(+)-depe 97.2 0.0026 5.7E-08 62.7 10.1 110 185-304 73-191 (465)
50 PRK11551 putative 3-hydroxyphe 97.1 0.0021 4.5E-08 61.7 9.1 103 192-304 263-368 (406)
51 TIGR00712 glpT glycerol-3-phos 97.1 0.0025 5.3E-08 62.7 9.7 102 190-301 67-175 (438)
52 PRK11195 lysophospholipid tran 97.1 0.0019 4.1E-08 62.9 8.5 97 195-303 49-147 (393)
53 TIGR00900 2A0121 H+ Antiporter 97.1 0.0015 3.2E-08 60.5 7.4 101 194-304 44-152 (365)
54 PRK15402 multidrug efflux syst 97.1 0.0024 5.3E-08 61.6 9.1 105 189-303 53-160 (406)
55 TIGR00899 2A0120 sugar efflux 97.1 0.0076 1.7E-07 56.6 12.2 96 198-304 249-347 (375)
56 TIGR00891 2A0112 putative sial 97.1 0.0018 3.8E-08 61.1 7.8 102 194-305 284-389 (405)
57 PRK15034 nitrate/nitrite trans 97.1 0.0026 5.6E-08 64.7 9.4 144 146-300 27-183 (462)
58 PRK05122 major facilitator sup 97.1 0.0079 1.7E-07 57.7 12.3 100 195-304 260-362 (399)
59 PRK08633 2-acyl-glycerophospho 97.1 0.0018 4E-08 70.7 8.8 101 194-304 57-163 (1146)
60 TIGR00924 yjdL_sub1_fam amino 97.1 0.0013 2.8E-08 66.2 7.1 143 154-303 11-164 (475)
61 TIGR00887 2A0109 phosphate:H+ 97.1 0.0016 3.4E-08 65.4 7.6 107 189-305 61-176 (502)
62 KOG0254|consensus 97.1 0.0026 5.7E-08 64.3 9.3 106 188-303 93-201 (513)
63 TIGR00881 2A0104 phosphoglycer 97.1 0.0071 1.5E-07 56.1 11.5 32 274-305 340-371 (379)
64 PRK10091 MFS transport protein 97.0 0.0017 3.6E-08 62.5 7.3 105 188-302 42-149 (382)
65 TIGR00897 2A0118 polyol permea 97.0 0.0017 3.8E-08 62.9 7.4 96 195-300 59-162 (402)
66 TIGR00792 gph sugar (Glycoside 97.0 0.0053 1.1E-07 59.4 10.6 108 195-305 268-379 (437)
67 PRK10642 proline/glycine betai 97.0 0.0028 6.1E-08 63.5 8.9 101 191-301 64-175 (490)
68 TIGR00889 2A0110 nucleoside tr 97.0 0.0042 9E-08 61.3 9.8 99 196-304 263-369 (418)
69 PF05977 MFS_3: Transmembrane 97.0 0.0023 5E-08 65.9 8.2 143 150-304 218-367 (524)
70 PRK11652 emrD multidrug resist 97.0 0.0029 6.4E-08 60.6 8.5 101 190-300 49-152 (394)
71 TIGR00881 2A0104 phosphoglycer 96.9 0.00077 1.7E-08 62.5 4.0 98 190-297 36-136 (379)
72 TIGR00890 2A0111 Oxalate/Forma 96.9 0.0022 4.7E-08 59.5 6.5 96 190-296 44-142 (377)
73 PRK10473 multidrug efflux syst 96.9 0.0055 1.2E-07 58.7 9.4 100 194-303 48-150 (392)
74 PRK09848 glucuronide transport 96.9 0.0064 1.4E-07 59.9 9.8 102 200-304 280-386 (448)
75 TIGR00883 2A0106 metabolite-pr 96.8 0.002 4.4E-08 60.1 5.9 95 198-302 49-154 (394)
76 PRK09874 drug efflux system pr 96.8 0.0062 1.3E-07 58.1 9.3 88 208-305 284-372 (408)
77 PRK11043 putative transporter; 96.8 0.0081 1.7E-07 57.8 10.0 105 189-303 46-153 (401)
78 PRK15403 multidrug efflux syst 96.8 0.0065 1.4E-07 59.6 9.3 110 184-303 51-163 (413)
79 PRK11273 glpT sn-glycerol-3-ph 96.8 0.0071 1.5E-07 59.8 9.5 94 190-293 69-169 (452)
80 PRK09952 shikimate transporter 96.8 0.0077 1.7E-07 59.5 9.7 99 192-300 72-181 (438)
81 PRK09669 putative symporter Ya 96.8 0.008 1.7E-07 59.2 9.8 106 199-307 279-389 (444)
82 PRK12382 putative transporter; 96.7 0.014 3.1E-07 55.9 10.7 99 197-305 262-363 (392)
83 PRK10489 enterobactin exporter 96.7 0.0047 1E-07 59.9 7.4 97 197-303 65-169 (417)
84 PRK03699 putative transporter; 96.7 0.0046 9.9E-08 59.7 7.1 100 191-300 49-151 (394)
85 PRK10207 dipeptide/tripeptide 96.6 0.0065 1.4E-07 61.6 8.3 93 203-303 69-166 (489)
86 TIGR00896 CynX cyanate transpo 96.6 0.028 6E-07 53.1 12.1 107 188-304 236-346 (355)
87 PF11700 ATG22: Vacuole efflux 96.6 0.0066 1.4E-07 61.8 8.3 145 150-304 278-440 (477)
88 PRK14995 methyl viologen resis 96.6 0.0081 1.7E-07 60.4 8.8 98 198-304 55-155 (495)
89 PRK11128 putative 3-phenylprop 96.6 0.021 4.6E-07 54.9 11.2 96 197-303 253-352 (382)
90 TIGR00896 CynX cyanate transpo 96.6 0.0032 6.9E-08 59.5 5.3 101 189-300 40-142 (355)
91 PRK10489 enterobactin exporter 96.6 0.029 6.3E-07 54.4 12.1 98 198-305 273-373 (417)
92 PF00083 Sugar_tr: Sugar (and 96.6 0.00062 1.3E-08 66.4 0.4 107 187-303 49-161 (451)
93 PRK11102 bicyclomycin/multidru 96.6 0.005 1.1E-07 58.2 6.5 103 191-303 33-138 (377)
94 TIGR00898 2A0119 cation transp 96.5 0.0037 7.9E-08 62.1 5.6 106 187-302 130-238 (505)
95 PRK08633 2-acyl-glycerophospho 96.5 0.02 4.2E-07 62.7 11.6 95 198-302 283-380 (1146)
96 PRK09528 lacY galactoside perm 96.5 0.0066 1.4E-07 59.1 7.1 99 195-303 273-375 (420)
97 PRK15011 sugar efflux transpor 96.5 0.0074 1.6E-07 58.4 7.3 102 192-304 260-364 (393)
98 TIGR00882 2A0105 oligosacchari 96.5 0.016 3.5E-07 55.8 9.6 102 194-305 264-369 (396)
99 TIGR00898 2A0119 cation transp 96.5 0.01 2.2E-07 58.9 8.3 94 198-301 369-467 (505)
100 TIGR00892 2A0113 monocarboxyla 96.5 0.013 2.8E-07 58.3 9.0 65 230-304 329-393 (455)
101 TIGR00880 2_A_01_02 Multidrug 96.5 0.0026 5.6E-08 50.2 3.2 96 199-304 13-111 (141)
102 PRK10504 putative transporter; 96.4 0.029 6.4E-07 55.2 11.2 94 202-305 315-414 (471)
103 PRK09584 tppB putative tripept 96.4 0.012 2.5E-07 59.8 8.1 95 202-304 75-174 (500)
104 PRK03699 putative transporter; 96.3 0.035 7.6E-07 53.6 10.7 105 191-306 248-355 (394)
105 PRK06814 acylglycerophosphoeth 96.3 0.022 4.7E-07 62.8 10.3 63 232-304 332-394 (1140)
106 TIGR00892 2A0113 monocarboxyla 96.3 0.022 4.9E-07 56.6 9.5 97 191-298 61-161 (455)
107 PRK10213 nepI ribonucleoside t 96.3 0.033 7.3E-07 54.2 10.5 107 187-305 251-365 (394)
108 PRK06814 acylglycerophosphoeth 96.2 0.011 2.4E-07 65.1 7.6 105 191-305 59-169 (1140)
109 PF03825 Nuc_H_symport: Nucleo 96.2 0.024 5.2E-07 56.4 9.0 93 202-304 261-362 (400)
110 TIGR00806 rfc RFC reduced fola 96.2 0.0095 2E-07 61.3 6.2 97 195-302 73-172 (511)
111 PRK10054 putative transporter; 96.2 0.026 5.6E-07 55.0 9.0 85 208-303 270-356 (395)
112 PTZ00207 hypothetical protein; 96.0 0.026 5.5E-07 59.3 8.7 88 198-296 75-171 (591)
113 PRK09705 cynX putative cyanate 95.9 0.14 3.1E-06 49.6 12.7 98 196-303 252-352 (393)
114 PF01306 LacY_symp: LacY proto 95.8 0.055 1.2E-06 54.5 9.8 62 202-263 277-341 (412)
115 TIGR01299 synapt_SV2 synaptic 95.8 0.021 4.6E-07 61.3 7.1 98 197-304 608-708 (742)
116 PRK12307 putative sialic acid 95.7 0.036 7.7E-07 53.5 7.9 103 192-304 274-381 (426)
117 PF02487 CLN3: CLN3 protein; 95.7 0.48 1E-05 47.7 16.0 150 139-301 229-392 (402)
118 TIGR00883 2A0106 metabolite-pr 95.7 0.047 1E-06 50.9 8.1 101 194-304 265-373 (394)
119 PRK03545 putative arabinose tr 95.5 0.23 5.1E-06 47.6 12.7 97 196-304 253-353 (390)
120 PRK11663 regulatory protein Uh 95.5 0.24 5.1E-06 48.7 12.6 30 275-304 368-397 (434)
121 KOG4686|consensus 95.4 0.095 2.1E-06 51.3 9.1 104 187-304 303-412 (459)
122 TIGR00711 efflux_EmrB drug res 95.4 0.059 1.3E-06 52.8 7.9 103 192-304 299-408 (485)
123 COG0738 FucP Fucose permease [ 95.3 0.045 9.7E-07 55.0 7.0 105 191-305 55-165 (422)
124 COG2211 MelB Na+/melibiose sym 95.2 0.22 4.8E-06 51.0 11.8 149 153-304 236-394 (467)
125 PRK14995 methyl viologen resis 95.2 0.073 1.6E-06 53.5 8.2 98 197-304 308-411 (495)
126 KOG2532|consensus 95.2 0.017 3.6E-07 58.9 3.6 85 208-304 99-188 (466)
127 TIGR00939 2a57 Equilibrative N 95.1 0.67 1.4E-05 46.9 14.9 153 146-308 262-436 (437)
128 PRK11273 glpT sn-glycerol-3-ph 95.1 0.14 3.1E-06 50.6 9.8 31 274-304 377-408 (452)
129 TIGR00903 2A0129 major facilit 95.1 0.035 7.7E-07 54.0 5.4 108 185-304 28-138 (368)
130 PRK11462 putative transporter; 95.1 0.19 4.2E-06 50.3 10.8 107 197-306 276-387 (460)
131 PRK09556 uhpT sugar phosphate 95.1 0.21 4.5E-06 49.6 10.9 142 154-305 259-411 (467)
132 TIGR00879 SP MFS transporter, 95.0 0.022 4.7E-07 54.4 3.6 107 188-304 323-443 (481)
133 TIGR00897 2A0118 polyol permea 94.9 0.19 4.2E-06 48.7 10.1 98 195-304 268-374 (402)
134 TIGR01272 gluP glucose/galacto 94.9 0.51 1.1E-05 44.9 12.7 105 154-258 141-254 (310)
135 PRK10207 dipeptide/tripeptide 94.8 0.045 9.8E-07 55.6 5.6 69 234-312 379-447 (489)
136 TIGR00788 fbt folate/biopterin 94.8 0.019 4.1E-07 57.8 2.8 114 188-311 288-418 (468)
137 PRK03633 putative MFS family t 94.8 0.2 4.4E-06 48.0 9.7 100 192-303 243-344 (381)
138 COG2270 Permeases of the major 94.6 0.051 1.1E-06 54.9 5.2 143 152-304 251-401 (438)
139 PRK10642 proline/glycine betai 94.6 0.23 4.9E-06 49.8 9.7 86 195-290 297-388 (490)
140 PRK11010 ampG muropeptide tran 94.4 0.23 5E-06 50.2 9.5 95 199-303 60-166 (491)
141 PRK09528 lacY galactoside perm 94.4 0.08 1.7E-06 51.5 5.9 71 154-224 11-88 (420)
142 PRK15462 dipeptide/tripeptide 94.4 0.088 1.9E-06 54.1 6.4 98 198-303 59-161 (493)
143 PRK15402 multidrug efflux syst 94.0 0.36 7.9E-06 46.5 9.5 97 196-303 263-367 (406)
144 KOG1479|consensus 94.0 0.3 6.4E-06 49.2 9.0 148 147-305 240-404 (406)
145 TIGR02718 sider_RhtX_FptX side 93.9 0.49 1.1E-05 45.4 10.3 98 198-304 258-364 (390)
146 TIGR00924 yjdL_sub1_fam amino 93.9 0.64 1.4E-05 46.9 11.5 61 233-303 380-440 (475)
147 COG2814 AraJ Arabinose efflux 93.8 0.16 3.4E-06 51.0 6.9 137 148-297 8-154 (394)
148 PRK10077 xylE D-xylose transpo 93.8 0.053 1.2E-06 53.2 3.4 103 188-300 310-420 (479)
149 KOG1330|consensus 93.8 0.075 1.6E-06 54.3 4.4 139 152-301 32-178 (493)
150 KOG3764|consensus 93.7 0.041 8.9E-07 55.5 2.5 104 186-301 104-217 (464)
151 TIGR00899 2A0120 sugar efflux 93.6 0.33 7.2E-06 45.4 8.4 87 208-302 59-147 (375)
152 KOG0252|consensus 93.6 0.046 9.9E-07 56.1 2.6 152 142-305 30-205 (538)
153 PRK09584 tppB putative tripept 93.4 0.26 5.6E-06 50.1 7.7 68 234-311 382-449 (500)
154 TIGR00882 2A0105 oligosacchari 93.3 0.086 1.9E-06 50.7 4.0 107 154-260 3-125 (396)
155 PF05631 DUF791: Protein of un 93.2 0.3 6.6E-06 48.3 7.6 94 170-263 47-151 (354)
156 PRK11195 lysophospholipid tran 93.2 0.56 1.2E-05 45.6 9.4 97 197-303 254-353 (393)
157 PRK11646 multidrug resistance 93.1 0.44 9.6E-06 46.5 8.6 88 208-305 270-358 (400)
158 PRK11652 emrD multidrug resist 93.1 0.39 8.4E-06 46.0 8.1 60 234-304 299-358 (394)
159 TIGR00710 efflux_Bcr_CflA drug 93.0 0.78 1.7E-05 43.0 9.9 96 194-300 252-356 (385)
160 KOG0569|consensus 93.0 0.099 2.1E-06 53.7 3.9 99 188-296 64-168 (485)
161 PRK09952 shikimate transporter 92.9 0.64 1.4E-05 45.9 9.5 66 198-263 300-372 (438)
162 KOG0255|consensus 92.8 0.18 3.8E-06 50.8 5.4 80 184-263 118-200 (521)
163 TIGR00887 2A0109 phosphate:H+ 92.3 0.33 7.2E-06 48.7 6.7 29 275-303 423-451 (502)
164 TIGR00886 2A0108 nitrite extru 92.1 0.81 1.8E-05 42.8 8.7 81 196-291 273-364 (366)
165 TIGR00902 2A0127 phenyl propri 91.9 0.28 6.1E-06 47.2 5.3 104 155-259 6-119 (382)
166 PRK11043 putative transporter; 91.8 1.2 2.7E-05 42.7 9.7 97 196-303 250-354 (401)
167 TIGR00901 2A0125 AmpG-related 91.8 0.24 5.2E-06 46.7 4.7 96 198-303 36-142 (356)
168 KOG2504|consensus 91.7 0.84 1.8E-05 47.1 8.9 57 208-264 107-165 (509)
169 PRK03893 putative sialic acid 91.6 0.29 6.2E-06 48.3 5.2 99 195-303 322-425 (496)
170 KOG2325|consensus 91.6 0.97 2.1E-05 46.6 9.1 112 184-306 67-191 (488)
171 PF05977 MFS_3: Transmembrane 91.6 0.58 1.3E-05 48.4 7.6 100 194-303 55-162 (524)
172 PRK10091 MFS transport protein 91.4 2.4 5.3E-05 40.6 11.3 103 191-304 242-348 (382)
173 TIGR00712 glpT glycerol-3-phos 91.3 1.7 3.6E-05 42.7 10.2 29 275-303 376-405 (438)
174 PRK11102 bicyclomycin/multidru 91.0 1.5 3.2E-05 41.4 9.2 26 196-221 242-269 (377)
175 COG2223 NarK Nitrate/nitrite t 90.8 0.77 1.7E-05 46.4 7.2 127 148-285 9-145 (417)
176 PRK11902 ampG muropeptide tran 90.3 0.79 1.7E-05 44.3 6.8 95 198-302 47-152 (402)
177 TIGR02332 HpaX 4-hydroxyphenyl 89.3 0.91 2E-05 44.4 6.4 29 275-303 364-392 (412)
178 TIGR00894 2A0114euk Na(+)-depe 89.1 1.9 4E-05 42.6 8.5 58 154-212 262-327 (465)
179 PRK11010 ampG muropeptide tran 88.6 2.5 5.3E-05 42.8 9.2 95 195-299 270-371 (491)
180 PF03137 OATP: Organic Anion T 88.4 0.15 3.3E-06 52.8 0.3 70 234-313 141-211 (539)
181 TIGR00885 fucP L-fucose:H+ sym 88.2 5 0.00011 39.5 10.9 70 189-258 274-345 (410)
182 TIGR01301 GPH_sucrose GPH fami 87.5 3.5 7.6E-05 42.3 9.5 144 151-302 256-440 (477)
183 PF03209 PUCC: PUCC protein; 87.2 6.4 0.00014 39.8 10.9 92 203-304 268-361 (403)
184 PRK10133 L-fucose transporter; 86.5 4.3 9.3E-05 40.4 9.3 72 189-261 300-374 (438)
185 PF06609 TRI12: Fungal trichot 86.3 2.4 5.2E-05 44.8 7.7 58 197-254 91-151 (599)
186 PRK11902 ampG muropeptide tran 86.1 2.2 4.8E-05 41.2 6.9 68 196-263 258-332 (402)
187 PRK11128 putative 3-phenylprop 86.0 1.3 2.8E-05 42.5 5.2 66 196-262 51-122 (382)
188 PRK15075 citrate-proton sympor 85.4 1.9 4.2E-05 42.2 6.2 95 197-301 287-389 (434)
189 PRK15011 sugar efflux transpor 85.1 5.2 0.00011 38.6 8.9 94 202-303 70-166 (393)
190 PRK10473 multidrug efflux syst 84.7 8.1 0.00018 36.9 10.0 61 192-252 247-310 (392)
191 PF01733 Nucleoside_tran: Nucl 84.7 0.32 6.9E-06 46.4 0.3 143 149-303 139-307 (309)
192 PF01306 LacY_symp: LacY proto 84.3 3.3 7.3E-05 41.8 7.4 119 153-271 7-137 (412)
193 KOG3762|consensus 83.9 0.79 1.7E-05 48.1 2.7 62 202-263 424-488 (618)
194 PRK15034 nitrate/nitrite trans 83.1 7.4 0.00016 39.8 9.4 71 154-226 253-330 (462)
195 PF06609 TRI12: Fungal trichot 82.6 5.3 0.00011 42.3 8.3 109 185-305 351-466 (599)
196 PTZ00207 hypothetical protein; 81.9 5.3 0.00011 42.2 8.0 52 235-301 453-504 (591)
197 COG0477 ProP Permeases of the 81.8 6.2 0.00013 33.8 7.2 106 190-304 45-156 (338)
198 TIGR00903 2A0129 major facilit 81.1 13 0.00027 36.2 9.9 30 275-304 311-340 (368)
199 TIGR00792 gph sugar (Glycoside 81.0 9.1 0.0002 36.9 8.8 103 187-298 34-154 (437)
200 COG2807 CynX Cyanate permease 81.0 3 6.6E-05 41.8 5.5 112 177-299 36-153 (395)
201 TIGR00889 2A0110 nucleoside tr 78.8 2.5 5.5E-05 41.6 4.2 97 158-254 7-112 (418)
202 TIGR01272 gluP glucose/galacto 78.3 3.2 6.9E-05 39.4 4.6 63 234-306 10-72 (310)
203 KOG3626|consensus 78.2 2.1 4.5E-05 46.3 3.6 64 236-309 239-303 (735)
204 TIGR01301 GPH_sucrose GPH fami 77.2 10 0.00023 38.9 8.2 27 277-303 149-175 (477)
205 KOG2504|consensus 76.8 28 0.00061 36.0 11.3 137 155-301 300-445 (509)
206 COG3104 PTR2 Dipeptide/tripept 75.7 3.1 6.6E-05 43.1 3.9 103 160-262 28-145 (498)
207 TIGR00926 2A1704 Peptide:H+ sy 75.1 3.4 7.4E-05 44.0 4.2 111 184-301 19-145 (654)
208 PLN00028 nitrate transmembrane 73.1 7.1 0.00015 39.1 5.8 22 191-212 295-318 (476)
209 KOG2615|consensus 72.2 1.3 2.9E-05 44.8 0.3 89 208-307 94-183 (451)
210 KOG2816|consensus 70.9 13 0.00029 38.0 7.2 85 208-306 88-174 (463)
211 PF05529 Bap31: B-cell recepto 70.3 4.1 9E-05 36.3 3.0 72 87-172 50-121 (192)
212 KOG0569|consensus 69.8 1.5 3.2E-05 45.3 -0.0 70 156-225 273-348 (485)
213 PRK10406 alpha-ketoglutarate t 69.6 46 0.00099 32.5 10.5 28 194-221 289-318 (432)
214 TIGR00769 AAA ADP/ATP carrier 69.4 37 0.0008 34.9 10.0 154 151-304 5-189 (472)
215 COG2271 UhpC Sugar phosphate p 68.4 6.8 0.00015 40.0 4.3 79 184-263 65-146 (448)
216 PF07672 MFS_Mycoplasma: Mycop 67.3 24 0.00051 33.9 7.5 60 236-303 206-265 (267)
217 PRK10429 melibiose:sodium symp 65.8 31 0.00067 34.4 8.5 79 208-295 72-158 (473)
218 PRK09669 putative symporter Ya 63.4 48 0.001 32.5 9.2 83 209-300 76-166 (444)
219 COG2814 AraJ Arabinose efflux 62.6 1.1E+02 0.0023 31.0 11.6 138 150-302 212-357 (394)
220 PF00083 Sugar_tr: Sugar (and 61.7 0.25 5.4E-06 48.2 -7.2 65 159-223 259-327 (451)
221 PRK15403 multidrug efflux syst 59.0 97 0.0021 30.3 10.5 55 237-302 315-369 (413)
222 COG2807 CynX Cyanate permease 58.8 37 0.0008 34.3 7.4 98 190-297 249-350 (395)
223 KOG4686|consensus 55.8 0.97 2.1E-05 44.5 -4.0 96 165-260 56-162 (459)
224 KOG2563|consensus 54.9 42 0.00091 34.7 7.2 110 188-307 82-203 (480)
225 KOG2563|consensus 54.7 28 0.00062 35.9 6.0 155 74-248 206-373 (480)
226 KOG2615|consensus 54.6 72 0.0016 32.7 8.7 90 202-301 316-409 (451)
227 KOG3098|consensus 54.6 1.7E+02 0.0036 30.3 11.5 59 203-261 302-380 (461)
228 PF07168 Ureide_permease: Urei 52.8 11 0.00024 36.9 2.6 94 155-253 218-322 (336)
229 KOG2816|consensus 50.3 92 0.002 31.9 9.0 97 195-302 288-388 (463)
230 PLN02351 cytochromes b561 fami 49.6 60 0.0013 30.7 6.8 204 83-313 14-228 (242)
231 KOG0255|consensus 45.8 29 0.00063 34.8 4.5 86 208-303 376-465 (521)
232 KOG3653|consensus 45.1 41 0.00089 35.0 5.4 48 53-100 118-176 (534)
233 PLN02680 carbon-monoxide oxyge 45.0 43 0.00093 31.5 5.1 191 84-305 13-218 (232)
234 PF03092 BT1: BT1 family; Int 44.7 1.6E+02 0.0036 29.3 9.7 93 208-310 281-384 (433)
235 KOG1619|consensus 44.2 1.1E+02 0.0025 28.9 7.8 124 81-207 19-153 (245)
236 KOG4332|consensus 44.0 36 0.00078 33.6 4.5 67 196-262 84-153 (454)
237 KOG3626|consensus 41.6 75 0.0016 34.7 7.0 35 196-230 441-483 (735)
238 PF13347 MFS_2: MFS/sugar tran 40.4 1E+02 0.0022 30.0 7.3 101 185-294 34-154 (428)
239 PF06963 FPN1: Ferroportin1 (F 40.3 2.1E+02 0.0045 29.2 9.6 149 154-312 259-421 (432)
240 KOG0252|consensus 39.1 1.3E+02 0.0028 31.5 7.9 78 151-228 302-394 (538)
241 PRK15462 dipeptide/tripeptide 38.2 1E+02 0.0022 31.8 7.2 79 215-303 352-437 (493)
242 COG2223 NarK Nitrate/nitrite t 38.1 1.6E+02 0.0034 30.1 8.3 75 152-226 217-298 (417)
243 PF12606 RELT: Tumour necrosis 38.1 66 0.0014 23.2 4.1 20 79-98 4-23 (50)
244 TIGR00788 fbt folate/biopterin 38.0 63 0.0014 32.5 5.5 107 190-304 67-182 (468)
245 COG0738 FucP Fucose permease [ 35.9 89 0.0019 31.9 6.1 76 186-262 274-352 (422)
246 KOG1582|consensus 32.9 1.6E+02 0.0034 28.9 6.9 68 132-200 22-89 (367)
247 COG2271 UhpC Sugar phosphate p 31.8 1.2E+02 0.0027 31.2 6.4 141 82-231 185-339 (448)
248 PF11027 DUF2615: Protein of u 31.2 2.1E+02 0.0046 23.6 6.6 50 53-105 30-79 (103)
249 KOG4255|consensus 30.6 5.9E+02 0.013 25.9 10.8 79 74-155 188-268 (439)
250 PF11700 ATG22: Vacuole efflux 30.6 86 0.0019 32.1 5.2 32 278-309 186-217 (477)
251 cd08764 Cyt_b561_CG1275_like N 29.8 3E+02 0.0066 25.4 8.1 59 235-312 144-202 (214)
252 KOG1055|consensus 29.1 59 0.0013 35.7 3.7 100 71-186 574-677 (865)
253 TIGR02718 sider_RhtX_FptX side 28.6 3.4E+02 0.0075 25.7 8.7 12 208-219 65-76 (390)
254 PF12832 MFS_1_like: MFS_1 lik 28.4 51 0.0011 25.2 2.4 63 156-218 3-71 (77)
255 PF03219 TLC: TLC ATP/ADP tran 27.1 2.8E+02 0.0061 28.7 8.2 125 75-220 219-357 (491)
256 KOG3374|consensus 26.9 35 0.00075 31.0 1.3 28 88-118 6-33 (210)
257 KOG3386|consensus 24.7 1E+02 0.0022 27.1 3.9 70 90-168 45-116 (155)
258 PF00854 PTR2: POT family; In 24.6 69 0.0015 30.8 3.1 61 235-302 34-94 (372)
259 PF06783 UPF0239: Uncharacteri 23.7 1.7E+02 0.0037 23.4 4.6 38 73-111 13-52 (85)
260 PF10808 DUF2542: Protein of u 23.3 66 0.0014 25.2 2.1 24 77-100 53-76 (79)
261 PF13000 Acatn: Acetyl-coenzym 22.7 3.5E+02 0.0075 28.7 7.8 59 237-308 408-466 (544)
262 PF03209 PUCC: PUCC protein; 22.6 1.4E+02 0.0031 30.3 4.9 33 273-305 118-150 (403)
263 KOG1734|consensus 22.2 1.5E+02 0.0032 28.8 4.7 94 159-271 108-202 (328)
264 KOG2262|consensus 21.1 9E+02 0.019 26.6 10.5 94 151-249 71-198 (761)
265 COG2211 MelB Na+/melibiose sym 20.9 5.4E+02 0.012 26.6 8.8 58 208-265 78-143 (467)
No 1
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=100.00 E-value=4.9e-34 Score=248.75 Aligned_cols=144 Identities=38% Similarity=0.680 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHhHHhhhhcc----cC------CCChhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHH
Q psy853 158 LSLAFMVQFTAFQGTANLQSSI----NA------KEGLGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPY 225 (314)
Q Consensus 158 lsi~F~l~ftAf~~~~~LqSSi----n~------~~~lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iy 225 (314)
||++||++|+||++.+++++++ ++ ++++|+++++++|++++++|+++|++ ++|+||+|++|+++|++|
T Consensus 1 Lg~~f~~~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y 80 (156)
T PF05978_consen 1 LGIGFMFLFTAFQTQSFIQESVIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIY 80 (156)
T ss_pred CchHHHHHHHHHhhhhHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5899999999999999999865 33 36899999999999999999999998 999999999999999999
Q ss_pred HhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853 226 IGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETV 305 (314)
Q Consensus 226 i~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~ 305 (314)
+++++||++|+++++++++|+|++++|++||.|+++++ ++++++|++++||+++|+|+++||++.+++..
T Consensus 81 ~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s----------~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 81 IASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYS----------TEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC----------CHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998 57899999999999999999999999999988
Q ss_pred CCCCCC
Q psy853 306 LPDIPE 311 (314)
Q Consensus 306 ~~~~~~ 311 (314)
..+.+|
T Consensus 151 ~~~~~~ 156 (156)
T PF05978_consen 151 GQTSNE 156 (156)
T ss_pred CCcCCC
Confidence 877765
No 2
>KOG3097|consensus
Probab=99.96 E-value=1.3e-29 Score=242.39 Aligned_cols=156 Identities=49% Similarity=0.853 Sum_probs=148.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCChhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHH
Q psy853 148 KWRILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPY 225 (314)
Q Consensus 148 k~~~l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iy 225 (314)
|..++||+.++|++||+.|++|++++|+|+++|. ++|..|+..+|.....+++|.|.+ ++|+||+|+++..+|.+|
T Consensus 24 ~~~~~knv~i~s~~fl~~f~a~~gl~nlq~~vn~--~lg~~sl~~~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly 101 (390)
T KOG3097|consen 24 RLGILKNVLILSIAFLLTFTAYLGLQNLQTSVNY--DLGTVSLGALYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY 101 (390)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc--CcccchhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4468999999999999999999999999999997 899999999999999999999976 999999999999999999
Q ss_pred HhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhc-ccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 226 IGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLT-DQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 226 i~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~-~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
++.|++|++++++|++..+|+|++++|+++|+|+|+.+++|++.+ ++..+..+.||+|.||.++|..+++||++++.++
T Consensus 102 iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli~ 181 (390)
T KOG3097|consen 102 IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLIM 181 (390)
T ss_pred HHhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhhhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 4667788999999999999999999999999886
Q ss_pred h
Q psy853 305 V 305 (314)
Q Consensus 305 ~ 305 (314)
.
T Consensus 182 ~ 182 (390)
T KOG3097|consen 182 T 182 (390)
T ss_pred H
Confidence 4
No 3
>KOG3098|consensus
Probab=99.93 E-value=5.5e-27 Score=234.54 Aligned_cols=155 Identities=26% Similarity=0.444 Sum_probs=144.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhHHhhhhcc----cC------CCChhhHHHHHHHHHHHHhhhcccee--eeccceee
Q psy853 148 KWRILKNIGSLSLAFMVQFTAFQGTANLQSSI----NA------KEGLGTVSLSAIYAALVLSCIFVPTF--RLTVKWTL 215 (314)
Q Consensus 148 k~~~l~Nvi~lsi~F~l~ftAf~~~~~LqSSi----n~------~~~lG~~slailY~~~~is~~f~P~I--~lG~K~sL 215 (314)
+...++|+..+|++|++++++|++..++++++ ++ .++.||++++++|.+|+++|+|+|+| ++|+||+|
T Consensus 4 ~~~~~~~v~~lg~g~~~~f~~~~s~~fi~esvi~sv~~~~~g~i~~~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~l 83 (461)
T KOG3098|consen 4 RRFELLNVLMLGFGFLFLFTAYDSQGFIAESVIHSVHERGPGGISAYAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWAL 83 (461)
T ss_pred ccchhheeeehhhhHHHHhHhhhhhHHHHHHHHHHHHhcCCCCcCCCccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHH
Confidence 33568999999999999999999999998764 22 35799999999999999999999999 99999999
Q ss_pred eehhhhhHHHHhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHH
Q psy853 216 CVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELW 295 (314)
Q Consensus 216 vig~l~Y~iyi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~ii 295 (314)
++|+.+|+.|.+++++|+.|++|.+|+++|+|+|++|++||.|+++++ ++++++||.+++|+++++|.++
T Consensus 84 v~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~ylt~~s----------t~~tie~Nisi~Wai~~~~li~ 153 (461)
T KOG3098|consen 84 VIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGGYLTSNS----------TRETIERNISIFWAIGQSSLII 153 (461)
T ss_pred HHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccceehhhcC----------ChhhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998 6899999999999999999999
Q ss_pred HHHHHHHhhhCCCCCCC
Q psy853 296 GNLISSLETVLPDIPEP 312 (314)
Q Consensus 296 GnLIs~~il~~~~~~~~ 312 (314)
|+++.+++....+.++.
T Consensus 154 Ggi~l~~~~~~~~~~~~ 170 (461)
T KOG3098|consen 154 GGIILFIYFQFSSSSAI 170 (461)
T ss_pred hhHhheeeeEecccccc
Confidence 99999999888877654
No 4
>KOG3097|consensus
Probab=99.32 E-value=2e-13 Score=131.71 Aligned_cols=201 Identities=23% Similarity=0.304 Sum_probs=130.3
Q ss_pred cccccccCccchhhccCCCCCCCCcccCCCCcchhhhhhccCCccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q psy853 15 NSLSIRNTLPPSQVLSSGAHGGGHHVNSSANNVEETRLRSCGSNFCVIGGKGLDNLERPPDSEIYHITGIYLSCIVVATI 94 (314)
Q Consensus 15 ~~~~v~gNLiSslvl~~~~~~~~~~~~~~~~~~~~~~~~~CGan~C~~~~~~~~~~~rP~~~~i~~l~gIy~~c~vlAvl 94 (314)
.+.++|||+|||+|+....|+.....|.+ .+++ ||+|||+.+...+.|++||+++.+..+..||+.|+++|++
T Consensus 167 ~~~qv~gn~issli~~~~~~~~~~~sn~t---~~~~----CG~~f~~~g~~a~~nlt~p~~~~~lvls~i~L~c~via~~ 239 (390)
T KOG3097|consen 167 QCAQVWGNLISSLIMTLFLHGALSGSNLT---FSVE----CGANFCGSGDKAEGNLTLPPSYVILVLSLIFLPCMVIAVL 239 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCccce---eeee----cccccCCccccccCCccCCCCCceEEeeHHHHHHHHHHHH
Confidence 36799999999999999888744322322 2222 9999999888999999999999999999999999999999
Q ss_pred HHHHhcCCCCCccccCCcCCCCCCCCCCCCCCCCCCCcccccCCCcccccchhhhhhhHHHHHHHHHHHHHHHHHHhHHh
Q psy853 95 MIALMVDPLSSGISNKGFKDEDGNDLQKPPMPMVSGTEEEQIPRGKFKMSTKEKWRILKNIGSLSLAFMVQFTAFQGTAN 174 (314)
Q Consensus 95 ~va~fld~l~~~q~n~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~Nvi~lsi~F~l~ftAf~~~~~ 174 (314)
++.+|+|+++|+-|++...-++.++-+-+ +++-...|++ .++-+++|.++..
T Consensus 240 ~~~~~~~~l~r~~~~r~~~~~~l~i~~l~-----------------~~~l~~~r~~-----------llvP~tif~Gleq 291 (390)
T KOG3097|consen 240 IMLFFLGALKRYGEKRLASVSGLNIFQLT-----------------FKHLRDIRLR-----------LLVPLTIFSGLEQ 291 (390)
T ss_pred HHHHHHHHHhhhhhhhhhcccccchHHHH-----------------HHHhcCccee-----------eeehhhhhhHHHH
Confidence 99999999999966662222222211111 1111122222 2233445555444
Q ss_pred hhhccc-----CCCChhhHHHHHHHHHHHHh-----hhcccee-eeccceeeeehhhhhHHHH--hhccccc---ceehh
Q psy853 175 LQSSIN-----AKEGLGTVSLSAIYAALVLS-----CIFVPTF-RLTVKWTLCVSMMCYLPYI--GFQFYPR---FYTLV 238 (314)
Q Consensus 175 LqSSin-----~~~~lG~~slailY~~~~is-----~~f~P~I-~lG~K~sLvig~l~Y~iyi--~s~~yp~---~y~li 238 (314)
.+--.+ ..-.+|---.+..|..+.+. ++|.+.. ++|.-..++++...-.+-+ .-++-|+ .+..+
T Consensus 292 aF~~~~fTk~~V~c~~Gv~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l~li~~~~~w~~~~~~~~i~y 371 (390)
T KOG3097|consen 292 AFLCADFTKAYVACALGVSRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHLLLITILFFWAPNPQDSWIFY 371 (390)
T ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHhcccCCCCceEEE
Confidence 332111 11234555555555555544 3455555 8888888888877554433 3333333 56778
Q ss_pred hhHHHhccCchh
Q psy853 239 PAGILVGIGAAP 250 (314)
Q Consensus 239 ~as~l~G~gagl 250 (314)
..+++-|+|-+.
T Consensus 372 ~~aalwgv~d~v 383 (390)
T KOG3097|consen 372 VAAALWGVGDAV 383 (390)
T ss_pred eehhhcCccHHH
Confidence 888998887664
No 5
>PF13347 MFS_2: MFS/sugar transport protein
Probab=97.99 E-value=7.3e-05 Score=73.27 Aligned_cols=120 Identities=13% Similarity=0.071 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc-c--ccceehhhhHHHhccCchhhhchhhhhHhh
Q psy853 187 TVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-Y--PRFYTLVPAGILVGIGAAPMWAAKATYLTQ 261 (314)
Q Consensus 187 ~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-y--p~~y~li~as~l~G~gagllW~aqg~ylt~ 261 (314)
..-..+.+....++.++.|.+ |+|.|+++.++.+.+.+-.+..+ . .+.+.+++..++.|++.+..|+...+.+.+
T Consensus 263 ~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad 342 (428)
T PF13347_consen 263 SIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLAD 342 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhccccccccccccc
Confidence 334445566666666677777 99999999999988877655533 3 378888999999999999999999999988
Q ss_pred hhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhCCCC
Q psy853 262 VGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVLPDI 309 (314)
Q Consensus 262 ~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~~~~ 309 (314)
.......+++ ++.-|.++|++..+...++.+|..+...++.....
T Consensus 343 ~id~~e~~tg---~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 343 VIDYDEWKTG---RRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred chhhHHHhcC---CCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 8754443333 34578899999999999999999998888765433
No 6
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=97.85 E-value=6.7e-05 Score=73.47 Aligned_cols=144 Identities=19% Similarity=0.134 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCChhh----HHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHH
Q psy853 152 LKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGT----VSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPY 225 (314)
Q Consensus 152 l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~lG~----~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iy 225 (314)
++.++.+.+++++.+.-..........+.++-++.. ...++.+..++++.++...+ ++|.|+.+.++.+.+.+.
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~ 86 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA 86 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 556777777777655544444433333333222222 23344455566666666655 999999999999888776
Q ss_pred Hhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 226 IGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 226 i~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
.... +-++++.++.+-++.|++.+..|++...++.+.. +++.+++..+++......+.++|.+++..+.
T Consensus 87 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~----------~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 156 (412)
T TIGR02332 87 STATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWF----------PAYFRARANALFMIAMPVTMALGLILSGYIL 156 (412)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6543 4467778889999999999999988888887765 3567899999999999999999998887665
Q ss_pred h
Q psy853 305 V 305 (314)
Q Consensus 305 ~ 305 (314)
.
T Consensus 157 ~ 157 (412)
T TIGR02332 157 A 157 (412)
T ss_pred h
Confidence 4
No 7
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.85 E-value=5.2e-05 Score=71.52 Aligned_cols=143 Identities=15% Similarity=0.226 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCh----hhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHH
Q psy853 152 LKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGL----GTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPY 225 (314)
Q Consensus 152 l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~l----G~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iy 225 (314)
++.+..+.+++++....+.....+...+.++-++ .....++.+....++.++...+ ++|.|+.++++.+...+-
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 90 (405)
T TIGR00891 11 WNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAG 90 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455666666666666555555554443221111 1223344555566666666666 999999999998777654
Q ss_pred Hhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 226 IGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 226 i~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
... .+.++++.++.+-++.|++.+..+++..+++.+.. .++.+++..+++......+.++|+++...+.
T Consensus 91 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~ 160 (405)
T TIGR00891 91 TLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESW----------PKHLRNKASGLLISGYAVGAVVAAQVYSLVV 160 (405)
T ss_pred HHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhC----------ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 33466777888999999999999999888888775 3567889999999999999998888776554
No 8
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.80 E-value=0.0001 Score=71.78 Aligned_cols=104 Identities=12% Similarity=0.148 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhh
Q psy853 191 SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYA 267 (314)
Q Consensus 191 ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~ 267 (314)
++......++.++.+.+ ++|.|+.++++.+.+.+-... -+.++.+.++..-++.|++.+..++....++.+..
T Consensus 62 ~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~---- 137 (394)
T PRK10213 62 TVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLV---- 137 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc----
Confidence 34445555666666666 999999999999888764333 34566788889999999999999998888887765
Q ss_pred hhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 268 KLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 268 ~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
+++.+++..++++.....+.++|..+...+.
T Consensus 138 ------~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~ 168 (394)
T PRK10213 138 ------PPRTVPKALSVIFGAVSIALVIAAPLGSFLG 168 (394)
T ss_pred ------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999988888776553
No 9
>TIGR00895 2A0115 benzoate transport.
Probab=97.80 E-value=5.1e-05 Score=71.09 Aligned_cols=104 Identities=12% Similarity=-0.022 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHH-HHhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853 190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLP-YIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY 266 (314)
Q Consensus 190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~i-yi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y 266 (314)
.++......++.++.+.+ ++|.|..++...+.-.. +.......+.+.++...++.|++.+..++...+++.+..
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--- 367 (398)
T TIGR00895 291 GALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFY--- 367 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---
Confidence 334444455666666666 88888433322221111 111122345555677888999999988888777776665
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
.++.+++..|+...+..++..+|.++...+
T Consensus 368 -------~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 368 -------PTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred -------CHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 467889999999999999999999887754
No 10
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=97.77 E-value=3.1e-05 Score=71.45 Aligned_cols=102 Identities=17% Similarity=0.244 Sum_probs=81.8
Q ss_pred HHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhccc-ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhh
Q psy853 193 IYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKL 269 (314)
Q Consensus 193 lY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~ 269 (314)
.+....++.++.+.+ ++|.|+.++++.+.+++......+ ++.+.++.+.++.|++.+..+++...++.+..
T Consensus 41 ~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~------ 114 (352)
T PF07690_consen 41 FFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWF------ 114 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccc------
Confidence 334455566666655 999999999999988888333334 66678899999999999999999999998886
Q ss_pred cccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 270 TDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 270 ~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
+++.+++..++.....+.+.++|.++...+.
T Consensus 115 ----~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 145 (352)
T PF07690_consen 115 ----PPEERGRAFGILSAGFSLGSILGPLLGGFLI 145 (352)
T ss_dssp ----CTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ----hhhhhhhccccccchhhhhhhcccchhhhhh
Confidence 3568899999999999999999999887665
No 11
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.76 E-value=6.4e-05 Score=68.69 Aligned_cols=107 Identities=17% Similarity=0.265 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhccc-ccceehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853 190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY 266 (314)
Q Consensus 190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y 266 (314)
.++.+....+++++.+.+ ++|+|+.++++.+...+....... ++.+.++.+.++.|++.+..|++...++.+..
T Consensus 40 ~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~--- 116 (352)
T cd06174 40 VSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWF--- 116 (352)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhC---
Confidence 334444455555555555 999999999998887766655443 56677888999999999999999999988886
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhC
Q psy853 267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVL 306 (314)
Q Consensus 267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~ 306 (314)
+++.+++..++.....+.+.++|+.+...+...
T Consensus 117 -------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 149 (352)
T cd06174 117 -------PPKERGRALGLFSAGFGLGALLGPLLGGLLAES 149 (352)
T ss_pred -------CccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999988877643
No 12
>PRK03545 putative arabinose transporter; Provisional
Probab=97.73 E-value=8.5e-05 Score=71.43 Aligned_cols=101 Identities=11% Similarity=0.064 Sum_probs=76.5
Q ss_pred HHHHHHHhhhcccee--eeccceeeeehhhhhHHHH-hhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhh
Q psy853 193 IYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYI-GFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKL 269 (314)
Q Consensus 193 lY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi-~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~ 269 (314)
.+...+++.++.+.+ |+|.|+.+.++.+.+.+-. ...+.++.+.++..-++.|++.+..|+...+++.+..
T Consensus 53 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~------ 126 (390)
T PRK03545 53 YAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVA------ 126 (390)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------
Confidence 334455666655555 9999999999988776653 3344577788888889999999999988888877765
Q ss_pred cccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 270 TDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 270 ~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
.++.+++..|++......+.++|..+...+
T Consensus 127 ----~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l 156 (390)
T PRK03545 127 ----PAGKKAQALSLLATGTALAMVLGLPLGRVI 156 (390)
T ss_pred ----ChhhhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 356788999998888888888887766543
No 13
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.71 E-value=0.00013 Score=78.09 Aligned_cols=105 Identities=11% Similarity=0.190 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853 189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAV 265 (314)
Q Consensus 189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~ 265 (314)
..++.+....+++++.+.+ ++|.|++++++.+...+..+. .+-++++.++++-++.|+|.+...+....|+.+..
T Consensus 207 l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~-- 284 (742)
T TIGR01299 207 LGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFL-- 284 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
Confidence 4566677778888888877 999999999998877766544 33456777888899999999999999999998886
Q ss_pred hhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 266 YAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 266 y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
..+.+++..++...++.+|.+++.+++..+
T Consensus 285 --------p~~~Rg~~~g~~~~~~~iG~ila~~la~~i 314 (742)
T TIGR01299 285 --------AQEKRGEHLSWLCMFWMIGGIYAAAMAWAI 314 (742)
T ss_pred --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788889988888888888887765544
No 14
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.70 E-value=5.7e-05 Score=72.11 Aligned_cols=102 Identities=17% Similarity=0.164 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhccc-c---cceehhhhHHHhccCchhhhchhhhhHhhh
Q psy853 189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY-P---RFYTLVPAGILVGIGAAPMWAAKATYLTQV 262 (314)
Q Consensus 189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y-p---~~y~li~as~l~G~gagllW~aqg~ylt~~ 262 (314)
..++.+....++.++...+ ++|+|+.++++.+...+-.....+ + ..+.++.+-++.|+|.+..++..-.++++.
T Consensus 76 ~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~ 155 (481)
T TIGR00879 76 VVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEI 155 (481)
T ss_pred HHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHcc
Confidence 4445555566666666666 999999999988877654443322 2 234678899999999999999888888877
Q ss_pred hhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy853 263 GAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLIS 300 (314)
Q Consensus 263 s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs 300 (314)
. .++.+++..+++......+.++|.++.
T Consensus 156 ~----------~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 156 A----------PKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred C----------ChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 6 466788999999888899999988887
No 15
>PRK10133 L-fucose transporter; Provisional
Probab=97.60 E-value=0.00026 Score=70.39 Aligned_cols=143 Identities=11% Similarity=0.031 Sum_probs=95.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCChh----hHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHH
Q psy853 151 ILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLG----TVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLP 224 (314)
Q Consensus 151 ~l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~lG----~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~i 224 (314)
.+.-++.+.+.|+..-........+...+.++-++. -..++..+....++.++.+.+ ++|+|+++.++.+.+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~ 103 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 355666666666654444443333333332211222 223344455566666666665 99999999999988877
Q ss_pred HHhhc----ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy853 225 YIGFQ----FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLIS 300 (314)
Q Consensus 225 yi~s~----~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs 300 (314)
-.... +-++++.++.+-++.|+|.+.++++...++.+.+ .++.+.+..+++...++++..+|.++.
T Consensus 104 ~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~----------~~~~~~~~~s~~~~~~~~G~~~g~~~g 173 (438)
T PRK10133 104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG----------PESSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC----------ChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66442 3566777888999999999999999999987664 234444567888888899999998876
Q ss_pred HHh
Q psy853 301 SLE 303 (314)
Q Consensus 301 ~~i 303 (314)
..+
T Consensus 174 ~~l 176 (438)
T PRK10133 174 QSL 176 (438)
T ss_pred HHH
Confidence 543
No 16
>TIGR00895 2A0115 benzoate transport.
Probab=97.59 E-value=0.00027 Score=66.24 Aligned_cols=102 Identities=12% Similarity=0.216 Sum_probs=77.9
Q ss_pred HHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhh
Q psy853 193 IYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKL 269 (314)
Q Consensus 193 lY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~ 269 (314)
......++.++.+.+ ++|.|+.++++.+...+.... .+.++.+.++.+.++.|++.+..+++.-+++.+..
T Consensus 61 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------ 134 (398)
T TIGR00895 61 GLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYA------ 134 (398)
T ss_pred HHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHc------
Confidence 334455556666666 999999999988766554433 34456667788899999999999999888888775
Q ss_pred cccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 270 TDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 270 ~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
.++.+++..+++.....++.++|.++...++
T Consensus 135 ----~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 165 (398)
T TIGR00895 135 ----PKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI 165 (398)
T ss_pred ----CHHhhchhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 3567889999999999999999888775543
No 17
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=97.54 E-value=0.00047 Score=67.64 Aligned_cols=100 Identities=15% Similarity=0.187 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccce--------ehhhhHHHhccCchhhhchhhhh
Q psy853 190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFY--------TLVPAGILVGIGAAPMWAAKATY 258 (314)
Q Consensus 190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y--------~li~as~l~G~gagllW~aqg~y 258 (314)
.++.|....+++++...+ ++|.|+++.++.+.+.+..... +.|+.. .++..=++.|+|.|..|++..+|
T Consensus 69 ~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~ 148 (432)
T PRK10406 69 FAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATY 148 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHH
Confidence 455566666788777777 9999999999999997776553 335432 46778899999999999999999
Q ss_pred HhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy853 259 LTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLI 299 (314)
Q Consensus 259 lt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLI 299 (314)
+.+.. .++.|+++.++.......+.+++.++
T Consensus 149 i~e~~----------p~~~rg~~~~~~~~~~~~G~~~~~~~ 179 (432)
T PRK10406 149 MSEVA----------VEGRKGFYASFQYVTLIGGQLLALLV 179 (432)
T ss_pred HHHhC----------CCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 98876 24556777666655555555544443
No 18
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=97.53 E-value=0.00033 Score=65.89 Aligned_cols=106 Identities=9% Similarity=0.065 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853 189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAV 265 (314)
Q Consensus 189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~ 265 (314)
..++.+....++.++.+.+ ++|.|+.++++.+...+-.... +.++.+.++...++.|++.+..+++...++.+..
T Consensus 45 ~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-- 122 (385)
T TIGR00710 45 TLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIY-- 122 (385)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhc--
Confidence 3444445556666677666 9999999999887766555433 3456677788899999999999998888887765
Q ss_pred hhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 266 YAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 266 y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
.++.+++..++.......+.++|..+...+.
T Consensus 123 --------~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 153 (385)
T TIGR00710 123 --------PGEELSRIYSILMPVLALAPAVAPLLGGYIL 153 (385)
T ss_pred --------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999888887776543
No 19
>PRK03633 putative MFS family transporter protein; Provisional
Probab=97.52 E-value=0.00021 Score=68.59 Aligned_cols=141 Identities=14% Similarity=0.208 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhcccCCCChhhHHHHHHHHH----HHHhhhcccee--eeccceeeeehhhhhHHHH
Q psy853 153 KNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAA----LVLSCIFVPTF--RLTVKWTLCVSMMCYLPYI 226 (314)
Q Consensus 153 ~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~lG~~slailY~~----~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi 226 (314)
++++.+.++.++.-.++....-+-..+.++-|........+... ..++.++.+.+ ++|.|+.+.++.+.+.+-.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~ 85 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGC 85 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666655544333333233222222223333333333333 44444444444 9999999999988887544
Q ss_pred hh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 227 GF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 227 ~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
.. -+.++.+.++++-++.|++.+..|+.....+.+.. .++.+++..+++......+..+|.++...+
T Consensus 86 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l 153 (381)
T PRK03633 86 AGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSG----------TSRNRGRLLAAYMMVYYLGTVLGQLLVSKV 153 (381)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33 44567788888999999999999987555544433 245688999999888898988888877654
No 20
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.49 E-value=0.00042 Score=69.42 Aligned_cols=136 Identities=11% Similarity=0.062 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhcccCCCC-----hhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHH
Q psy853 153 KNIGSLSLAFMVQFTAFQGTANLQSSINAKEG-----LGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPY 225 (314)
Q Consensus 153 ~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~-----lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iy 225 (314)
+-+....+++++.+....+...+...+.++-+ .|.. .++.+....++.++...+ ++|+|+.++++.+...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~-~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~ 114 (476)
T PLN00028 36 RAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNA-GIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPA 114 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 34444444555555444444333333322212 2322 233334455566666666 999999999988777665
Q ss_pred Hhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy853 226 IGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLIS 300 (314)
Q Consensus 226 i~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs 300 (314)
... -+.++.+.++.+-++.|++.+.... ...++++.. .++.+++..|++....+.+..+|.++.
T Consensus 115 ~~~~~~~~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~----------~~~~rg~a~g~~~~~~~~g~~~~~~~~ 179 (476)
T PLN00028 115 VFCMSLVSSATGFIAVRFFIGFSLATFVS-CQYWMSTMF----------NGKIVGTANGIAAGWGNLGGGVTQLLM 179 (476)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhhHH-HHHHHHHhc----------ChhheeHHHHHHHHHHHHHHHHHHHHH
Confidence 543 3344566667777888988875432 223444332 234567777776655555555554433
No 21
>PRK12382 putative transporter; Provisional
Probab=97.47 E-value=0.00029 Score=67.56 Aligned_cols=102 Identities=16% Similarity=0.129 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhhcccee--eeccceeeeehhhhhHH----HHhhccc-----ccceehhhhHHHhccCchhhhchhhhhH
Q psy853 191 SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLP----YIGFQFY-----PRFYTLVPAGILVGIGAAPMWAAKATYL 259 (314)
Q Consensus 191 ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~i----yi~s~~y-----p~~y~li~as~l~G~gagllW~aqg~yl 259 (314)
++.+....+++.+...+ ++|.|+.+.++.+...+ |..+.+. ++.+.++.+.++.|++.+..+++..+++
T Consensus 58 s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 137 (392)
T PRK12382 58 GIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWG 137 (392)
T ss_pred HHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555 99999999988776543 2222222 3456678889999999999998877776
Q ss_pred hhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853 260 TQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302 (314)
Q Consensus 260 t~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~ 302 (314)
.+.. +++.+++..++.......+.++|.++...
T Consensus 138 ~~~~----------~~~~r~~a~~~~~~~~~~g~~~g~~~~~~ 170 (392)
T PRK12382 138 LGLV----------GPKHSGKVMSWNGMAMYGALAAGAPLGLL 170 (392)
T ss_pred HhhC----------CccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 5554 24456777777666666666666665543
No 22
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.47 E-value=0.00034 Score=68.93 Aligned_cols=108 Identities=13% Similarity=0.128 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc----ccccceehhhhHHHhccCchhhhchhhhhHhhh
Q psy853 189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ----FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQV 262 (314)
Q Consensus 189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~----~yp~~y~li~as~l~G~gagllW~aqg~ylt~~ 262 (314)
..+..+....+++++.+.+ |+|+|+++++|.+.+++-.+.. ..++++.++.+..+.|+|.+.++++...|+.+.
T Consensus 43 l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~ 122 (410)
T TIGR00885 43 VQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVM 122 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHH
Confidence 3355556666667666666 9999999999988776544432 234566778889999999999999999999887
Q ss_pred hhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhC
Q psy853 263 GAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVL 306 (314)
Q Consensus 263 s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~ 306 (314)
+ .++.+++..++...++.++..+|.++...+...
T Consensus 123 ~----------~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~ 156 (410)
T TIGR00885 123 G----------PESTATRRLNLAQSFNPFGSIIGMVVAQQLILS 156 (410)
T ss_pred C----------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6 356678889999999999999999998877543
No 23
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=97.47 E-value=0.00043 Score=67.54 Aligned_cols=93 Identities=17% Similarity=0.186 Sum_probs=73.1
Q ss_pred hcccee--eeccceeeeehhhhhHHHHhhccc-ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhH
Q psy853 202 IFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAII 278 (314)
Q Consensus 202 ~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~ 278 (314)
++...+ ++|.|+.++++.+.+.+......+ ++.+.++...++.|++.+..|++..+++.+.. .++.+
T Consensus 64 ~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~----------~~~~~ 133 (400)
T PRK11646 64 IFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLI----------RPHQR 133 (400)
T ss_pred hhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CHHHH
Confidence 444444 999999999999988776665443 45667788899999999999988888876664 35678
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 279 VRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 279 gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
++..|+.....+.+..+|..+...+.
T Consensus 134 ~~a~~~~~~~~~~g~~ig~~l~g~l~ 159 (400)
T PRK11646 134 GRFFSLLMMQDSAGAVIGALLGSWLL 159 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999988776553
No 24
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.46 E-value=0.0014 Score=59.91 Aligned_cols=142 Identities=17% Similarity=0.150 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhcccCC-CChhhHHHHHHHHH----HHHhhhcccee--eeccce-eeeehhhhhHHH
Q psy853 154 NIGSLSLAFMVQFTAFQGTANLQSSINAK-EGLGTVSLSAIYAA----LVLSCIFVPTF--RLTVKW-TLCVSMMCYLPY 225 (314)
Q Consensus 154 Nvi~lsi~F~l~ftAf~~~~~LqSSin~~-~~lG~~slailY~~----~~is~~f~P~I--~lG~K~-sLvig~l~Y~iy 225 (314)
.++.+.+..++....+............+ .+......+.++.. ..++.++.+.+ |+|.|+ .+.++.+.+.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 255 (352)
T cd06174 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALG 255 (352)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444444444444444444443332111 12223333333333 44444555555 899999 888877766555
Q ss_pred Hhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 226 IGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 226 i~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
.... +.++.+.+++..++.|++.+..|+....++.+.. +++.+++..|+.......+..+|..+...+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~ 325 (352)
T cd06174 256 LLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELA----------PPEARGTASGLFNTFGSLGGALGPLLAGLLL 325 (352)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4433 3344667788999999999999999999887776 3578999999999999999999999988776
Q ss_pred h
Q psy853 305 V 305 (314)
Q Consensus 305 ~ 305 (314)
.
T Consensus 326 ~ 326 (352)
T cd06174 326 D 326 (352)
T ss_pred c
Confidence 4
No 25
>KOG2533|consensus
Probab=97.45 E-value=0.00039 Score=71.22 Aligned_cols=109 Identities=15% Similarity=0.132 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhh
Q psy853 187 TVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVG 263 (314)
Q Consensus 187 ~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s 263 (314)
.....+.|..++++-+....+ ++...+.|....++..++.... +.-+.+.++.-=+++|+..|..|++.-.|+...=
T Consensus 84 ~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy 163 (495)
T KOG2533|consen 84 GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWY 163 (495)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhc
Confidence 345667788888888766666 8888888888888888888444 4444566677789999999999999999986654
Q ss_pred hhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853 264 AVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETV 305 (314)
Q Consensus 264 ~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~ 305 (314)
.++.+++-.|+|++..++|.++|++|++.+.+
T Consensus 164 ----------~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~ 195 (495)
T KOG2533|consen 164 ----------GKSERGLRMGIWYASASLGNIFGGLIAYGVFK 195 (495)
T ss_pred ----------ChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh
Confidence 36778999999999999999999999999876
No 26
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.42 E-value=0.00051 Score=65.55 Aligned_cols=102 Identities=13% Similarity=0.010 Sum_probs=66.1
Q ss_pred HHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc-cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhh
Q psy853 191 SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYA 267 (314)
Q Consensus 191 ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~ 267 (314)
++.+....+++++...+ ++|.|+.++++.+.+++...... -++++.++.+.++.|++.+. +.....++.+..
T Consensus 61 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~---- 135 (408)
T PRK09874 61 SITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGF-VPNANALIATQV---- 135 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhc----
Confidence 34444455555555555 99999999998887766554432 34566778888889987653 444334433332
Q ss_pred hhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 268 KLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 268 ~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
.++.+++..++.....+.+.++|..+...+
T Consensus 136 ------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 165 (408)
T PRK09874 136 ------PRNKSGWALGTLSTGGVSGALLGPLAGGLL 165 (408)
T ss_pred ------CHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245577888888777777777777665543
No 27
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.41 E-value=0.00036 Score=67.40 Aligned_cols=103 Identities=14% Similarity=0.180 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853 189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAV 265 (314)
Q Consensus 189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~ 265 (314)
..++.+....++.++.+.+ ++|.|+.++++.+...+.... .+.++.+.++.+-.+.|++.+..+++...++++..
T Consensus 58 ~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~-- 135 (426)
T PRK12307 58 LATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESW-- 135 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhC--
Confidence 3344455556666666666 999999999999887765543 33456677888999999999999998888887775
Q ss_pred hhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy853 266 YAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISS 301 (314)
Q Consensus 266 y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~ 301 (314)
.++.+++..+++.....++.++|..+..
T Consensus 136 --------~~~~r~~~~~~~~~~~~lg~~~~~~l~~ 163 (426)
T PRK12307 136 --------PKHLKSKASAFLVSGFGIGNIIAAYFMP 163 (426)
T ss_pred --------CHhHhhHhhhHHHHHHhHHHHHHHHHHH
Confidence 3566889999988888888888876543
No 28
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.40 E-value=0.00029 Score=65.24 Aligned_cols=106 Identities=17% Similarity=0.150 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853 189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAV 265 (314)
Q Consensus 189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~ 265 (314)
..++.+....++.++.+.+ ++|.|+.++++.+.+.+..... +.++.+.++.+-++.|++.+..+++...++.+..
T Consensus 34 ~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-- 111 (399)
T TIGR00893 34 VFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWF-- 111 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhC--
Confidence 3344445556666666666 9999999999988776655443 3456777888999999999999999999988876
Q ss_pred hhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 266 YAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 266 y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
.++.+++..+++.....++.++|..+...+.
T Consensus 112 --------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 142 (399)
T TIGR00893 112 --------PASERATAVSIFNSAQGLGGIIGGPLVGWIL 142 (399)
T ss_pred --------CHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 3567899999999999999999888776544
No 29
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.40 E-value=0.00085 Score=64.38 Aligned_cols=99 Identities=13% Similarity=0.094 Sum_probs=73.7
Q ss_pred HHHHHHHhhhcccee--eeccceeeeehhhhhHHHH-hhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhh
Q psy853 193 IYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYI-GFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKL 269 (314)
Q Consensus 193 lY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi-~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~ 269 (314)
.+....+++++...+ ++|.|+.+.++.+...+-. +..+.++++.++..-++.|++.+..++....++.+..
T Consensus 59 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~------ 132 (406)
T PRK11551 59 GILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAV------ 132 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc------
Confidence 334445555555555 9999999999987765543 3344566777888999999999999988888887765
Q ss_pred cccchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy853 270 TDQAVDAIIVRFFGFFFLAWQTAELWGNLISS 301 (314)
Q Consensus 270 ~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~ 301 (314)
.++.+++..++++.....+.++|.++..
T Consensus 133 ----~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 160 (406)
T PRK11551 133 ----GPRLRGTAVSLMYCGVPFGGALASVIGV 160 (406)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888777776653
No 30
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.40 E-value=0.00036 Score=65.46 Aligned_cols=140 Identities=13% Similarity=0.118 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhc-ccCCCChhhHH----HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHH
Q psy853 154 NIGSLSLAFMVQFTAFQGTANLQSS-INAKEGLGTVS----LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYI 226 (314)
Q Consensus 154 Nvi~lsi~F~l~ftAf~~~~~LqSS-in~~~~lG~~s----lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi 226 (314)
+.....+++++.+..+.....+... +.++-|+.... .++.+....++.++...+ ++|.|+.++++.+...+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPC 81 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 4455666677666666555544432 32222222222 333444455555666655 9999999999988777665
Q ss_pred hhc-ccc-cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 227 GFQ-FYP-RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 227 ~s~-~yp-~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
... +-+ +++.++.+.++.|++.+. +.....++++.. .++.+++..+++....+++..+|.++...+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~ 150 (366)
T TIGR00886 82 LWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFF----------PKKIQGTALGLAAGWGNMGGGVAQFVMPPII 150 (366)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhc----------CHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 443 234 666778888999998765 444445555544 3456788888888777777777776654433
No 31
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.39 E-value=0.0014 Score=60.54 Aligned_cols=101 Identities=15% Similarity=0.150 Sum_probs=72.0
Q ss_pred HHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccc-cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhh
Q psy853 194 YAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYP-RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKL 269 (314)
Q Consensus 194 Y~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp-~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~ 269 (314)
.....++.++.+.+ +.+.|+.+.++.+...+..... +.+ +.+.+++..++.|++.+..++...+++.+..
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------ 330 (365)
T TIGR00900 257 GLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRV------ 330 (365)
T ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------
Confidence 33344555566655 8888888877654443332222 223 2566678889999999988888777777765
Q ss_pred cccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 270 TDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 270 ~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
.++.+++..|++..+.+.+..+|..+...+.
T Consensus 331 ----~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~ 361 (365)
T TIGR00900 331 ----PAELLGRVFGAQFSLSHAAWPLGLILAGPLA 361 (365)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999998877654
No 32
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.39 E-value=0.00064 Score=65.18 Aligned_cols=105 Identities=16% Similarity=0.036 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHH----hhcccc-----cceehhhhHHHhccCchhhhchhhhh
Q psy853 190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYI----GFQFYP-----RFYTLVPAGILVGIGAAPMWAAKATY 258 (314)
Q Consensus 190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi----~s~~yp-----~~y~li~as~l~G~gagllW~aqg~y 258 (314)
.++.+....++.++.+.+ ++|+|+.++++.+.+.+-. .+.+.. +.+.++...++.|++.+..+++...+
T Consensus 57 ~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 136 (399)
T PRK05122 57 ISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILW 136 (399)
T ss_pred HHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHH
Confidence 334444455556666665 9999999999987665422 222211 34456888899999999999888777
Q ss_pred HhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 259 LTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 259 lt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
+.+.. .++.+++..++.......+.++|..+...+.
T Consensus 137 ~~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~ 172 (399)
T PRK05122 137 GIGRV----------GALHTGRVISWNGIATYGALAIGAPLGVLLY 172 (399)
T ss_pred HHhhc----------ChhhhccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 65553 2456777777777777777777777665543
No 33
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.39 E-value=0.0019 Score=59.77 Aligned_cols=59 Identities=12% Similarity=-0.018 Sum_probs=41.0
Q ss_pred eehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 235 YTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 235 y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
+..+....+.+++.+ .++..-+++.+.. .++.+++..|+...+.+++..+|+.+...+.
T Consensus 313 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~ 371 (399)
T TIGR00893 313 YAALALVALGFFGLG-AGAIGWALISDNA----------PGNIAGLTGGLINSLGNLGGIVGPIVIGAIA 371 (399)
T ss_pred HHHHHHHHHHHhchh-hhhHHHHHHHhhc----------ChhHHHHHHHHHHHHHHHhhhhhhHHhhhhc
Confidence 333333444444444 6666666666654 3667899999999999999999998877654
No 34
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=97.38 E-value=0.0011 Score=63.80 Aligned_cols=103 Identities=13% Similarity=0.033 Sum_probs=73.3
Q ss_pred HHHHHHHHHhh----hcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhh
Q psy853 191 SAIYAALVLSC----IFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVG 263 (314)
Q Consensus 191 ailY~~~~is~----~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s 263 (314)
+.+++...++. ++.+.+ ++|.|..++++.++..+-.... +.++.+.++...++.|++.+.+|++--.|+.+.
T Consensus 243 g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~- 321 (382)
T TIGR00902 243 GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ- 321 (382)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 33444444443 344444 8999999999998887655443 355667788899999999999999976666543
Q ss_pred hhhhhhcccchhhhHHHHHHHHHH-HHHhhHHHHHHHHHHhh
Q psy853 264 AVYAKLTDQAVDAIIVRFFGFFFL-AWQTAELWGNLISSLET 304 (314)
Q Consensus 264 ~~y~~~~~~~~~~~~gr~~giF~~-~~q~s~iiGnLIs~~il 304 (314)
.++.+++..+++.. ....+.++|++++..+.
T Consensus 322 ----------~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~ 353 (382)
T TIGR00902 322 ----------PGSEIAKLQALYNALAMGGLIAIFTAFAGFIY 353 (382)
T ss_pred ----------CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24556788888763 56788888888887654
No 35
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.38 E-value=0.00057 Score=67.49 Aligned_cols=141 Identities=17% Similarity=0.276 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCChh----hHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHH
Q psy853 152 LKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLG----TVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPY 225 (314)
Q Consensus 152 l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~lG----~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iy 225 (314)
++.+..+.+++++....+.....+...+.++-++. ....++.+....+++++...+ ++|.|+.++++.+..++-
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 98 (496)
T PRK03893 19 WKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVG 98 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 34555666666655554444443333332221222 223334445556666666666 999999999888766544
Q ss_pred Hhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853 226 IGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302 (314)
Q Consensus 226 i~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~ 302 (314)
... -+.++.+.++.+-++.|++.+..+.+...++.+.. .++.+++..+++.....++.++|..+...
T Consensus 99 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 166 (496)
T PRK03893 99 TLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESW----------PKHLRNKASGFLISGFSIGAVVAAQVYSL 166 (496)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 33456677888999999999999999888887765 35667888888888888888888765543
No 36
>PRK10504 putative transporter; Provisional
Probab=97.36 E-value=0.00065 Score=66.86 Aligned_cols=142 Identities=14% Similarity=0.117 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhcccCCCChhh----HHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHH
Q psy853 153 KNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGT----VSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYI 226 (314)
Q Consensus 153 ~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~lG~----~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi 226 (314)
++++.+.+++++....+.........+.++-|... ...+.......++.++.+.+ ++|.|+.++++.+.+.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 89 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS 89 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 35677777777665554444333333222111111 22233334456666666666 9999999998876665443
Q ss_pred hh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 227 GF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 227 ~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
+. .+-++.+.++.+-++.|++.+..+.....++.+.. .++.+++..|+.......+.++|..+...+.
T Consensus 90 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~ 158 (471)
T PRK10504 90 LFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIV----------PREQYMAAMTFVTLPGQVGPLLGPALGGLLV 158 (471)
T ss_pred HHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 32 33456677788899999999999988777766654 3456778888888888888888877765543
No 37
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=97.33 E-value=0.00091 Score=61.70 Aligned_cols=98 Identities=12% Similarity=0.099 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhccccc----ceehhhhHHHhccCchhhhchhhhhHhhhh
Q psy853 190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFYPR----FYTLVPAGILVGIGAAPMWAAKATYLTQVG 263 (314)
Q Consensus 190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp~----~y~li~as~l~G~gagllW~aqg~ylt~~s 263 (314)
.++......++.++.+.+ |++.|..+.+...+..+......+.. .+..+...++.|++.+..++..-.++.+..
T Consensus 249 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 328 (352)
T PF07690_consen 249 FSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELV 328 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333344444445555655 88888788777777776666654432 244566888899999999888888877765
Q ss_pred hhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHH
Q psy853 264 AVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGN 297 (314)
Q Consensus 264 ~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGn 297 (314)
.++.+++..|++..+.+++..+|.
T Consensus 329 ----------~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 329 ----------PPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp ----------HTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHHHHHHHHHCC
Confidence 467899999999988888888774
No 38
>PRK11663 regulatory protein UhpC; Provisional
Probab=97.32 E-value=0.00098 Score=65.55 Aligned_cols=102 Identities=11% Similarity=0.043 Sum_probs=74.2
Q ss_pred HHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhh
Q psy853 192 AIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAK 268 (314)
Q Consensus 192 ilY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~ 268 (314)
+......++.++...+ ++|.|+.+.++.+...+..... +-++.+.++..-++.|++.|..|++...++.+..
T Consensus 66 ~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~----- 140 (434)
T PRK11663 66 LFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWY----- 140 (434)
T ss_pred HHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhC-----
Confidence 4444456666666666 9999999999988877655443 3455666666777888888888888777776654
Q ss_pred hcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 269 LTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 269 ~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
.++.+++..|++......+.++|.++...+
T Consensus 141 -----~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l 170 (434)
T PRK11663 141 -----SRTERGGWWAIWNTAHNVGGALIPLVVGAI 170 (434)
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356688889999888888888887765544
No 39
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.32 E-value=0.00025 Score=70.45 Aligned_cols=98 Identities=10% Similarity=-0.036 Sum_probs=63.2
Q ss_pred HHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHh--hc----ccccceehhhhHHHhccCchhhhchhhhhHhhhh
Q psy853 192 AIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIG--FQ----FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVG 263 (314)
Q Consensus 192 ilY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~--s~----~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s 263 (314)
+.+..++++.++...+ ++|.|+.+.++.+...+... +. +-++.+.++..-++.|++.+..|++...++.+..
T Consensus 72 ~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 151 (467)
T PRK09556 72 GFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWT 151 (467)
T ss_pred HHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHc
Confidence 3455566667777766 99999998777655443322 21 2356777788888999999999998888876665
Q ss_pred hhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy853 264 AVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLI 299 (314)
Q Consensus 264 ~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLI 299 (314)
.++.+++..|++.....++.++|+++
T Consensus 152 ----------~~~~rg~a~gi~~~~~~lG~~l~~~i 177 (467)
T PRK09556 152 ----------PRRKRGRFLGFWNISHNLGGAGAGGV 177 (467)
T ss_pred ----------CccceeeeEEeeecccchhhhHHHHH
Confidence 23344555555544444444444433
No 40
>PRK10054 putative transporter; Provisional
Probab=97.32 E-value=0.00068 Score=66.02 Aligned_cols=141 Identities=7% Similarity=0.018 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhc-ccCCCChhhHH----HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHH
Q psy853 154 NIGSLSLAFMVQFTAFQGTANLQSS-INAKEGLGTVS----LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYI 226 (314)
Q Consensus 154 Nvi~lsi~F~l~ftAf~~~~~LqSS-in~~~~lG~~s----lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi 226 (314)
+++.+-++.++...++.....+.+. +.++-|..... .++.+....+.+.+...+ ++|.|+.++++.+...+-.
T Consensus 8 ~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~ 87 (395)
T PRK10054 8 STSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGF 87 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHH
Confidence 4556666666666665554443332 11111222222 222233444555556655 9999999999888775533
Q ss_pred hh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 227 GF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 227 ~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
+. -+.++++.++..-.+.|.+.+..+.+..++..+.. .++.+++..|+.....+++.++|..+...+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 88 IAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNL----------SSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 23445555555555666666666665555554443 3557889999999999999999988877654
No 41
>PRK15075 citrate-proton symporter; Provisional
Probab=97.30 E-value=0.00098 Score=65.43 Aligned_cols=96 Identities=16% Similarity=0.179 Sum_probs=73.0
Q ss_pred HHhhhcccee--eeccceeeeehhhhhHHHHhhcc-cccce--------ehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853 198 VLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-YPRFY--------TLVPAGILVGIGAAPMWAAKATYLTQVGAVY 266 (314)
Q Consensus 198 ~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-yp~~y--------~li~as~l~G~gagllW~aqg~ylt~~s~~y 266 (314)
.+++++.+.+ ++|.|+.++++.+.+.+..+..- .++.+ .++.+-++.|++.+..|++...|+++..
T Consensus 70 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~--- 146 (434)
T PRK15075 70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIA--- 146 (434)
T ss_pred hhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhC---
Confidence 4667777666 99999999999998877665543 33433 3467789999999999998888888776
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
.++.+++..+++....+.+..+|.++...+
T Consensus 147 -------p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l 176 (434)
T PRK15075 147 -------TPGRKGFYTSWQSASQQVAVVFAALLGYLL 176 (434)
T ss_pred -------CcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999988888777777766665544
No 42
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.26 E-value=0.0036 Score=58.03 Aligned_cols=103 Identities=14% Similarity=0.074 Sum_probs=68.2
Q ss_pred HHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc-cccc--eehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853 192 AIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-YPRF--YTLVPAGILVGIGAAPMWAAKATYLTQVGAVY 266 (314)
Q Consensus 192 ilY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-yp~~--y~li~as~l~G~gagllW~aqg~ylt~~s~~y 266 (314)
+......++.++.+.+ |+|.|+.+.++.+...+-..... .+.. +.++...++.|++.+..+.....++.+..
T Consensus 248 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~--- 324 (377)
T TIGR00890 248 ISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIF--- 324 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHh---
Confidence 3334445556666666 89999998887766655443322 2221 22334556777777777765555555543
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
.++.+++..|++.....++..+|+++...+.
T Consensus 325 -------~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 355 (377)
T TIGR00890 325 -------GPANSAANYGFLYTAKAVAGIFGGLIASHAL 355 (377)
T ss_pred -------hhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999998887654
No 43
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.22 E-value=0.00084 Score=70.41 Aligned_cols=101 Identities=18% Similarity=0.223 Sum_probs=77.8
Q ss_pred HHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcccc----------------------------------------
Q psy853 195 AALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFYP---------------------------------------- 232 (314)
Q Consensus 195 ~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp---------------------------------------- 232 (314)
...++..+++..+ +.|.|+.+.+|.+.+.+-.+.+..|
T Consensus 79 i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 158 (633)
T TIGR00805 79 IGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQC 158 (633)
T ss_pred HHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCcccccc
Confidence 3344555556555 9999999999987765544333222
Q ss_pred ------------cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy853 233 ------------RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLIS 300 (314)
Q Consensus 233 ------------~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs 300 (314)
.++.++.+-++.|+|.+++|+...+|+.++. .++.++++.|++.....++.++|.++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~----------~~~~~~~~~~i~~~~~~iG~~lG~llg 228 (633)
T TIGR00805 159 PSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFA----------KSKNSPLYIGILESIAVFGPAFGYLLG 228 (633)
T ss_pred ccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccC----------CccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 1234568999999999999999999998886 356789999999999999999999998
Q ss_pred HHhhh
Q psy853 301 SLETV 305 (314)
Q Consensus 301 ~~il~ 305 (314)
..++.
T Consensus 229 g~l~~ 233 (633)
T TIGR00805 229 SFCLQ 233 (633)
T ss_pred HHHHh
Confidence 87774
No 44
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.21 E-value=0.0009 Score=64.95 Aligned_cols=103 Identities=12% Similarity=0.120 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhh
Q psy853 188 VSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGA 264 (314)
Q Consensus 188 ~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~ 264 (314)
...++.+..+.++.++.+.+ ++|.|+++.++.+.+++-.+. -+-|+++.++.+-++.|+|.+..++....++.+.-
T Consensus 48 ~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~- 126 (393)
T PRK09705 48 LLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRF- 126 (393)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHc-
Confidence 34555566677777777777 999999999999988776654 45678888899999999999999988877764432
Q ss_pred hhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy853 265 VYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISS 301 (314)
Q Consensus 265 ~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~ 301 (314)
++.+++..|++......+..+|.++..
T Consensus 127 ----------~~~~~~~~g~~~~~~~~g~~~g~~~~~ 153 (393)
T PRK09705 127 ----------QQRTPLVMGLWSAALMGGGGLGAAITP 153 (393)
T ss_pred ----------cccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 234677777777666666666665544
No 45
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.19 E-value=0.0013 Score=64.56 Aligned_cols=106 Identities=11% Similarity=0.086 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhccc-------------ccceehhhhHHHhccCchhhhc
Q psy853 189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY-------------PRFYTLVPAGILVGIGAAPMWA 253 (314)
Q Consensus 189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y-------------p~~y~li~as~l~G~gagllW~ 253 (314)
..++.+....++.++...+ ++|.|++++++.+.+.+-.....+ +..+.++.+-++.|++.|..++
T Consensus 60 ~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~ 139 (479)
T PRK10077 60 CVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASM 139 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhh
Confidence 3344444455555666655 999999999999888765443222 2234567888999999999999
Q ss_pred hhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 254 AKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 254 aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
...+|+.+.. .++.+++..++......++.+++.+++.++.
T Consensus 140 ~~~~~i~e~~----------~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~ 180 (479)
T PRK10077 140 LSPMYIAEIA----------PAHIRGKLVSFNQFAIIFGQLVVYFVNYFIA 180 (479)
T ss_pred HHHHHHHhhC----------ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998887 3567888888888777777777766555443
No 46
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=97.18 E-value=0.0009 Score=65.51 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhh
Q psy853 191 SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYA 267 (314)
Q Consensus 191 ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~ 267 (314)
++......++.++.+.+ ++|.|+.++++.+.+.+-... .+.++.+.++.+-++.|++.+..++..-+++.+..
T Consensus 44 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~---- 119 (485)
T TIGR00711 44 TSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIY---- 119 (485)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHC----
Confidence 33444455556666665 999999999999888765543 34466777889999999999999999888888776
Q ss_pred hhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 268 KLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 268 ~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
.++.+++..+++......+.++|..+...+
T Consensus 120 ------~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 149 (485)
T TIGR00711 120 ------PPEKRGRAMAIWGLTVLVAPALGPTLGGWI 149 (485)
T ss_pred ------CHHHHHHHHHHHHHHHHHHhhhhhccHhHh
Confidence 356789999999999999998888776544
No 47
>TIGR00901 2A0125 AmpG-related permease.
Probab=97.16 E-value=0.00069 Score=63.97 Aligned_cols=84 Identities=10% Similarity=0.021 Sum_probs=63.5
Q ss_pred HHHhhhcccee--eeccceeeeehhhhhHHHHhhccc------------ccceehhhhHHHhccCchhhhchhhhhHhhh
Q psy853 197 LVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY------------PRFYTLVPAGILVGIGAAPMWAAKATYLTQV 262 (314)
Q Consensus 197 ~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y------------p~~y~li~as~l~G~gagllW~aqg~ylt~~ 262 (314)
..++.++.+.+ ++|.|+.++++.++.++......+ +..+.++.+.++.|++.+..+++..+++.+.
T Consensus 258 ~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 337 (356)
T TIGR00901 258 AILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKL 337 (356)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34666777777 999999988888766554433221 3345567778888999999999999999988
Q ss_pred hhhhhhhcccchhhhHHHHHHHHHHHHH
Q psy853 263 GAVYAKLTDQAVDAIIVRFFGFFFLAWQ 290 (314)
Q Consensus 263 s~~y~~~~~~~~~~~~gr~~giF~~~~q 290 (314)
+ +++.+++.+|++.++.+
T Consensus 338 ~----------p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 338 S----------NPKFGATQMALLSSLSA 355 (356)
T ss_pred c----------CCCccHHHHHHHHHHHh
Confidence 7 57889999999876553
No 48
>PRK10429 melibiose:sodium symporter; Provisional
Probab=97.16 E-value=0.0047 Score=61.72 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=70.9
Q ss_pred HHHhhhcccee--eeccceeeeehhhhhHHHHhhc-----cccc-ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhh
Q psy853 197 LVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-----FYPR-FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAK 268 (314)
Q Consensus 197 ~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-----~yp~-~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~ 268 (314)
..++.++.+.+ ++|.|.+++++.+...+-.+.. .-+. .+.+++..++.|++.+..|...-+++.+.......
T Consensus 279 ~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~ 358 (473)
T PRK10429 279 NLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEY 358 (473)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 34444555655 8999999887765443222111 1122 34556788899999999999988888887632221
Q ss_pred hcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853 269 LTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETV 305 (314)
Q Consensus 269 ~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~ 305 (314)
+++ .+.-|.++|....+..+++.+|+.+...++-
T Consensus 359 ~tG---~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 359 KLG---IRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred hcC---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 3345668888888889999999988887763
No 49
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.15 E-value=0.0026 Score=62.71 Aligned_cols=110 Identities=13% Similarity=0.058 Sum_probs=81.2
Q ss_pred hhhHHHHHHHHHHHHhhh----cccee--eeccceeeeehhhhhHHHHhhcc---cccceehhhhHHHhccCchhhhchh
Q psy853 185 LGTVSLSAIYAALVLSCI----FVPTF--RLTVKWTLCVSMMCYLPYIGFQF---YPRFYTLVPAGILVGIGAAPMWAAK 255 (314)
Q Consensus 185 lG~~slailY~~~~is~~----f~P~I--~lG~K~sLvig~l~Y~iyi~s~~---yp~~y~li~as~l~G~gagllW~aq 255 (314)
......+.++..+.++.. +...+ ++|.|+.+.++.+...+...... ....+.++..-++.|++.+..|++.
T Consensus 73 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~ 152 (465)
T TIGR00894 73 WSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPAT 152 (465)
T ss_pred CCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhH
Confidence 334444555555444444 44444 99999999999887666554321 2335567888999999999999999
Q ss_pred hhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 256 ATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 256 g~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
..++.+.. .++.+++..|++....+++.++|.++...+.
T Consensus 153 ~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~ 191 (465)
T TIGR00894 153 HKIIVKWA----------PPKERSRLLGMSTSGFQLGTFIFLPISGWLC 191 (465)
T ss_pred HHHHHhcC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888775 3577999999999999999999998877654
No 50
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.15 E-value=0.0021 Score=61.73 Aligned_cols=103 Identities=13% Similarity=0.065 Sum_probs=65.1
Q ss_pred HHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhh
Q psy853 192 AIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAK 268 (314)
Q Consensus 192 ilY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~ 268 (314)
+......++.++.+.+ ++|.|+.+.++.+...+.... .+.+..+.++...++.|++.+..++..-++..+..
T Consensus 263 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----- 337 (406)
T PRK11551 263 AFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFY----- 337 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHc-----
Confidence 3334455566666666 899999887765544333222 23344455566667777765554444444443332
Q ss_pred hcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 269 LTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 269 ~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
.++.+++..|+...+..++..+|+.+...+.
T Consensus 338 -----p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~ 368 (406)
T PRK11551 338 -----PTQVRGTGVGAAVAVGRLGSMAGPLLAGQLL 368 (406)
T ss_pred -----chhhhhhhhhHHHHhhhHHHHHHhhhHhhhh
Confidence 3567899999999999999999998877554
No 51
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.14 E-value=0.0025 Score=62.71 Aligned_cols=102 Identities=13% Similarity=0.010 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhccc-----ccceehhhhHHHhccCchhhhchhhhhHhhh
Q psy853 190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY-----PRFYTLVPAGILVGIGAAPMWAAKATYLTQV 262 (314)
Q Consensus 190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y-----p~~y~li~as~l~G~gagllW~aqg~ylt~~ 262 (314)
.++.+....+++++...+ ++|.|+.++++.+.+.+-...... .+.+.++..-.+.|++.+..|.....++.+.
T Consensus 67 ~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~ 146 (438)
T TIGR00712 67 LSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHW 146 (438)
T ss_pred HHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHh
Confidence 334444555666666655 999999999887665554333211 2334456677788999999998877777665
Q ss_pred hhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy853 263 GAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISS 301 (314)
Q Consensus 263 s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~ 301 (314)
. .++.+++..+++....+.+..+|+.+..
T Consensus 147 ~----------~~~~rg~~~~~~~~~~~~g~~~~~~l~~ 175 (438)
T TIGR00712 147 W----------SQSERGTIVSIWNCAHNIGGGIPPLLVL 175 (438)
T ss_pred c----------CcccchhHHHHHHHHHHhHhHHHHHHHH
Confidence 4 2456788888888777777777665443
No 52
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=97.11 E-value=0.0019 Score=62.90 Aligned_cols=97 Identities=23% Similarity=0.157 Sum_probs=71.3
Q ss_pred HHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhccc
Q psy853 195 AALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQ 272 (314)
Q Consensus 195 ~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~ 272 (314)
..+++...+...+ ++|.|+.|+++.+.+.+-.+....... .+..-++.|++.+..+++..+++.+..
T Consensus 49 l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~--~~~~r~l~G~~~a~~~pa~~a~i~~~~--------- 117 (393)
T PRK11195 49 LAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH--PLLAYGLVGIGAAAYSPAKYGILTELL--------- 117 (393)
T ss_pred HHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHc---------
Confidence 3345555555555 999999999999887654433222111 145567899999999999999998876
Q ss_pred chhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 273 AVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 273 ~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
.++.+++..|+.....+.+.++|..+...+
T Consensus 118 -~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l 147 (393)
T PRK11195 118 -PGEKLVKANGWMEGSTIAAILLGTVLGGAL 147 (393)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467799999999999998888887765433
No 53
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.11 E-value=0.0015 Score=60.47 Aligned_cols=101 Identities=11% Similarity=0.033 Sum_probs=75.1
Q ss_pred HHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccc-----cceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853 194 YAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYP-----RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAV 265 (314)
Q Consensus 194 Y~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp-----~~y~li~as~l~G~gagllW~aqg~ylt~~s~~ 265 (314)
.....++.++.+.+ ++|.|+.++++.+...+-... .+.+ +.+.++.+.++.|++.+..+++..+++.+..
T Consensus 44 ~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-- 121 (365)
T TIGR00900 44 MLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLV-- 121 (365)
T ss_pred HHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 33444555555555 999999999887765432221 2222 6677888999999999999999999988876
Q ss_pred hhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 266 YAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 266 y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
+++.+++..+++....+.+.++|.++...+.
T Consensus 122 --------~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 152 (365)
T TIGR00900 122 --------PEEQLTQANSLSQAVRSLFYIVGPGIGGLMY 152 (365)
T ss_pred --------CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999998888766543
No 54
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.10 E-value=0.0024 Score=61.57 Aligned_cols=105 Identities=13% Similarity=0.077 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853 189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAV 265 (314)
Q Consensus 189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~ 265 (314)
..++.+....++.++...+ ++|.|+.++++.+.+.+.... .+-++.+.++....+.|++.+..++....++.+..
T Consensus 53 ~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~-- 130 (406)
T PRK15402 53 SMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESF-- 130 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHh--
Confidence 3445555566666666666 999999999988776655443 33455667788899999999988877666665543
Q ss_pred hhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 266 YAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 266 y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
+++.+.+..++.......+..+|.++...+
T Consensus 131 --------~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l 160 (406)
T PRK15402 131 --------EEADAIKITALMANVALLAPLLGPLVGAAL 160 (406)
T ss_pred --------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234556667777777777777777765543
No 55
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.09 E-value=0.0076 Score=56.58 Aligned_cols=96 Identities=5% Similarity=0.005 Sum_probs=65.2
Q ss_pred HHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccch
Q psy853 198 VLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAV 274 (314)
Q Consensus 198 ~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~ 274 (314)
.++.++.+.+ |+|.|+.+.++.+...+..... +.++.+.++...++.|++.+..++....++.+..
T Consensus 249 ~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~----------- 317 (375)
T TIGR00899 249 IPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLM----------- 317 (375)
T ss_pred HHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------
Confidence 3344555555 9999998887766555443332 2344555666777888888887765555554443
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 275 DAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 275 ~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
++.+++..+++....+++..+|..+...+.
T Consensus 318 ~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~ 347 (375)
T TIGR00899 318 PGRAGAATTLYTNTGRVGWIIAGSVGGILA 347 (375)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234568899999999999999998877654
No 56
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.09 E-value=0.0018 Score=61.14 Aligned_cols=102 Identities=10% Similarity=-0.020 Sum_probs=67.1
Q ss_pred HHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-ccc-ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhh
Q psy853 194 YAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKL 269 (314)
Q Consensus 194 Y~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~ 269 (314)
.....++.++.+.+ ++|.|+.++++.+...+.... ... ...+.+..+..+.|+..+..|.....++.+..
T Consensus 284 ~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 357 (405)
T TIGR00891 284 NIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYF------ 357 (405)
T ss_pred HHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhC------
Confidence 33445556666666 999999988877654332222 112 23334444546666666666666666666554
Q ss_pred cccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853 270 TDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETV 305 (314)
Q Consensus 270 ~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~ 305 (314)
.++.+++..|+.+.+.+.+..+|+++...+.-
T Consensus 358 ----~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~ 389 (405)
T TIGR00891 358 ----PTDQRAAGLGFTYQLGNLGGALAPIIGALLAQ 389 (405)
T ss_pred ----CcchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999998876643
No 57
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=97.08 E-value=0.0026 Score=64.72 Aligned_cols=144 Identities=10% Similarity=-0.046 Sum_probs=98.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhHHhhhhcccC-CCChhhH----HHHHHHHHHHHhhhcccee--eeccceeeeeh
Q psy853 146 KEKWRILKNIGSLSLAFMVQFTAFQGTANLQSSINA-KEGLGTV----SLSAIYAALVLSCIFVPTF--RLTVKWTLCVS 218 (314)
Q Consensus 146 ~~k~~~l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~-~~~lG~~----slailY~~~~is~~f~P~I--~lG~K~sLvig 218 (314)
+.|+-..+|++..-++|++.|..+....-+...+.+ +-++... ..++.+...++.-+....+ ++|.|+.+.++
T Consensus 27 ~~~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~ 106 (462)
T PRK15034 27 KGKHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFS 106 (462)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 345445578888889999999999988877665543 1222222 2223334445554434444 99999999998
Q ss_pred hhhhHHHHhhccc------ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhh
Q psy853 219 MMCYLPYIGFQFY------PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTA 292 (314)
Q Consensus 219 ~l~Y~iyi~s~~y------p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s 292 (314)
.+...+-....-+ ++++.+++..++.|++ +..|++.-..++..- .++.+|+..|++.+...++
T Consensus 107 ~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wf----------p~~~rG~A~Gi~~g~G~~G 175 (462)
T PRK15034 107 TAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFF----------PKAKQGSALGINGGLGNLG 175 (462)
T ss_pred HHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHC----------CHhHhHHHHHHHHHHHhhH
Confidence 8876655544332 6777889999999997 668877666665543 3667999999998777777
Q ss_pred HHHHHHHH
Q psy853 293 ELWGNLIS 300 (314)
Q Consensus 293 ~iiGnLIs 300 (314)
..++.++.
T Consensus 176 ~~l~~~l~ 183 (462)
T PRK15034 176 VSVMQLVA 183 (462)
T ss_pred HHHHHHHH
Confidence 77666544
No 58
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.07 E-value=0.0079 Score=57.68 Aligned_cols=100 Identities=13% Similarity=0.058 Sum_probs=69.3
Q ss_pred HHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcc
Q psy853 195 AALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTD 271 (314)
Q Consensus 195 ~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~ 271 (314)
....++.++.+.+ ++|.|+.+.++.++..+-... .+.++.+.++++.++.|++.+..+........+..
T Consensus 260 ~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~-------- 331 (399)
T PRK05122 260 VAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRV-------- 331 (399)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--------
Confidence 3344555566666 889998888776655543322 23345566678889999999998877666554433
Q ss_pred cchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 272 QAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 272 ~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
.++.+++..|++......+..+|+.+...+.
T Consensus 332 --~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 362 (399)
T PRK05122 332 --PPQNRGAALGAYSVFLDLSLGITGPLAGLVA 362 (399)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677899999999988888888777665443
No 59
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.07 E-value=0.0018 Score=70.67 Aligned_cols=101 Identities=13% Similarity=0.068 Sum_probs=77.6
Q ss_pred HHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh----cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhh
Q psy853 194 YAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF----QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYA 267 (314)
Q Consensus 194 Y~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s----~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~ 267 (314)
...+.++++++..+ ++|.|+.|+++.+.+.++.+. .+....+.+++.-++.|++.+..+++..+++.+..
T Consensus 57 ~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~---- 132 (1146)
T PRK08633 57 LLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELV---- 132 (1146)
T ss_pred HHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhc----
Confidence 33345555555555 999999999888766555433 33345677888999999999999999999998886
Q ss_pred hhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 268 KLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 268 ~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
.++.+++..|+......++.++|.+++.++.
T Consensus 133 ------~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~ 163 (1146)
T PRK08633 133 ------GKENLSRANGLLEAFTIVAILAGTALFSFLF 163 (1146)
T ss_pred ------CcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899999888888888888877654
No 60
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=97.06 E-value=0.0013 Score=66.20 Aligned_cols=143 Identities=10% Similarity=0.061 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhcc-cCC--CChhhHHHHHHHHHHHHhhhccce----e--e-eccceeeeehhhhhH
Q psy853 154 NIGSLSLAFMVQFTAFQGTANLQSSI-NAK--EGLGTVSLSAIYAALVLSCIFVPT----F--R-LTVKWTLCVSMMCYL 223 (314)
Q Consensus 154 Nvi~lsi~F~l~ftAf~~~~~LqSSi-n~~--~~lG~~slailY~~~~is~~f~P~----I--~-lG~K~sLvig~l~Y~ 223 (314)
.+..+-+.-++.-.+|.+...+..-. .++ -|+.....+.+...+.+...+.+. + + +|.|++++++.+.++
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~ 90 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLM 90 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHH
Confidence 34444444444444444433332221 211 233344445555555555555544 3 6 899999999998877
Q ss_pred HHHhhccc-ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853 224 PYIGFQFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302 (314)
Q Consensus 224 iyi~s~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~ 302 (314)
+-.+.... ++.+.++.+-++.|+|.|..+++..+.+.+... + ++++.+++.+++++...+.|.++|.++...
T Consensus 91 ~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~---~----~~~~~r~~~~~~~~~~~niG~~ig~~l~g~ 163 (475)
T TIGR00924 91 LGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYE---R----GDMPRRDGGFTLFYMSINIGSFISPLLAGV 163 (475)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcC---C----CCcccccceehhHHHHHHHHHHHHHHHHHH
Confidence 65444333 345556677788999999999988888766541 0 011346677888888888888888777655
Q ss_pred h
Q psy853 303 E 303 (314)
Q Consensus 303 i 303 (314)
+
T Consensus 164 l 164 (475)
T TIGR00924 164 I 164 (475)
T ss_pred H
Confidence 4
No 61
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.06 E-value=0.0016 Score=65.44 Aligned_cols=107 Identities=11% Similarity=0.061 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc-ccc------ceehhhhHHHhccCchhhhchhhhhH
Q psy853 189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-YPR------FYTLVPAGILVGIGAAPMWAAKATYL 259 (314)
Q Consensus 189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-yp~------~y~li~as~l~G~gagllW~aqg~yl 259 (314)
..+..+....+++++...+ ++|+|++++++.+.+.+-..... .++ .+.++.+-++.|++.+..++....|+
T Consensus 61 ~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~ 140 (502)
T TIGR00887 61 VNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIIT 140 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3444555566777777777 99999999988877765443222 222 35678888999999999999999999
Q ss_pred hhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853 260 TQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETV 305 (314)
Q Consensus 260 t~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~ 305 (314)
++.. ..+.|++..++......++.++|.++...++.
T Consensus 141 ~e~~----------p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~ 176 (502)
T TIGR00887 141 SEFA----------TKKWRGAMMAAVFAMQGFGILAGAIVALIVLA 176 (502)
T ss_pred HHhc----------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887 46789999999999999999999988876543
No 62
>KOG0254|consensus
Probab=97.06 E-value=0.0026 Score=64.34 Aligned_cols=106 Identities=18% Similarity=0.259 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhh
Q psy853 188 VSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGA 264 (314)
Q Consensus 188 ~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~ 264 (314)
.-.++.+...++++++...+ ++|.|.+|.++.+.|.+-.+.. +-++.+.++.+-++.|+|.|..=.....|+++.+
T Consensus 93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEia- 171 (513)
T KOG0254|consen 93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIA- 171 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcC-
Confidence 33445555566777777766 9999999999999887766553 3457888899999999999999999999999998
Q ss_pred hhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 265 VYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 265 ~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
..+.||.+.+++......+..+|.++.++.
T Consensus 172 ---------p~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~ 201 (513)
T KOG0254|consen 172 ---------PAHIRGTLVSLYQLFITIGILLGYCINYGT 201 (513)
T ss_pred ---------ChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 467899999999888888888886666654
No 63
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.06 E-value=0.0071 Score=56.07 Aligned_cols=32 Identities=9% Similarity=-0.127 Sum_probs=26.6
Q ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853 274 VDAIIVRFFGFFFLAWQTAELWGNLISSLETV 305 (314)
Q Consensus 274 ~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~ 305 (314)
.++.+++..|++..+.+.+..+|+.+...+.-
T Consensus 340 ~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 371 (379)
T TIGR00881 340 PKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD 371 (379)
T ss_pred CcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 35678999999999999999999988776643
No 64
>PRK10091 MFS transport protein AraJ; Provisional
Probab=97.04 E-value=0.0017 Score=62.51 Aligned_cols=105 Identities=13% Similarity=0.149 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHH-hhcccccceehhhhHHHhccCchhhhchhhhhHhhhhh
Q psy853 188 VSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYI-GFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGA 264 (314)
Q Consensus 188 ~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi-~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~ 264 (314)
...++.+....++.++.+.+ ++|.|+.+.++.+...+-. +.-+-++++.++.+-++.|++.+..++....++.+..
T Consensus 42 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~- 120 (382)
T PRK10091 42 HMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKII- 120 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-
Confidence 34556666677777777766 9999999999887765543 2334567788889999999999998877766665554
Q ss_pred hhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853 265 VYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302 (314)
Q Consensus 265 ~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~ 302 (314)
+++.+++..++++.....+..+|..++..
T Consensus 121 ---------~~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 149 (382)
T PRK10091 121 ---------KPGKVTAAVAGMVSGMTVANLLGIPLGTY 149 (382)
T ss_pred ---------ChHHhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 24456777888777777777777665443
No 65
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.03 E-value=0.0017 Score=62.94 Aligned_cols=96 Identities=9% Similarity=0.069 Sum_probs=67.2
Q ss_pred HHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-----ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhh
Q psy853 195 AALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-----FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYA 267 (314)
Q Consensus 195 ~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-----~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~ 267 (314)
....+++++.+.+ ++|.|+.+.++.+...+-.+.. ..++++.++....+.|+|.+..+.+...++.+..
T Consensus 59 ~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~---- 134 (402)
T TIGR00897 59 IAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNT---- 134 (402)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhC----
Confidence 3346666666666 9999999999888776643321 1345667778888999998887766555555543
Q ss_pred hhcccchhhhHHHHHHHHHHHHHhhH-HHHHHHH
Q psy853 268 KLTDQAVDAIIVRFFGFFFLAWQTAE-LWGNLIS 300 (314)
Q Consensus 268 ~~~~~~~~~~~gr~~giF~~~~q~s~-iiGnLIs 300 (314)
.++.+++..|++......+. ++|.++.
T Consensus 135 ------~~~~~g~~~g~~~~~~~~g~~~~g~~~~ 162 (402)
T TIGR00897 135 ------KQDNLSSAVGWFWAVYSIGIGVFGSYYS 162 (402)
T ss_pred ------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35568888888888877776 4666554
No 66
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.01 E-value=0.0053 Score=59.41 Aligned_cols=108 Identities=8% Similarity=0.033 Sum_probs=72.3
Q ss_pred HHHHHhhhcccee--eeccceeeeehhhhhHHHHhhccc--ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhc
Q psy853 195 AALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY--PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLT 270 (314)
Q Consensus 195 ~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y--p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~ 270 (314)
....++.++.+.+ ++|.|+.+.++.+...+-.....+ .+.+.+++..++.|++.+..+...-+++.+.......
T Consensus 268 i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-- 345 (437)
T TIGR00792 268 VAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEW-- 345 (437)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--
Confidence 3344555566666 999999988887665543333322 2334556677888888888887777777665421111
Q ss_pred ccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853 271 DQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETV 305 (314)
Q Consensus 271 ~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~ 305 (314)
+..++..|.++|++..+.++++.+|..+...++-
T Consensus 346 -~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 346 -KTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred -hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123457899999999999999999998887764
No 67
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=97.01 E-value=0.0028 Score=63.52 Aligned_cols=101 Identities=10% Similarity=0.095 Sum_probs=78.0
Q ss_pred HHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-cccccee--------hhhhHHHhccCchhhhchhhhhH
Q psy853 191 SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYT--------LVPAGILVGIGAAPMWAAKATYL 259 (314)
Q Consensus 191 ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~--------li~as~l~G~gagllW~aqg~yl 259 (314)
++.|....++.++...+ ++|.|++++++.+.+.+..+.. +-|+++. ++..=++.|+|.|..|++...|+
T Consensus 64 ~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~ 143 (490)
T PRK10642 64 SVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFV 143 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHH
Confidence 66677788888887777 9999999999999988877653 4455442 67778999999999999999999
Q ss_pred hhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy853 260 TQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISS 301 (314)
Q Consensus 260 t~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~ 301 (314)
++.. .++.+++..+++......|.++|+++..
T Consensus 144 ~e~~----------p~~~Rg~~~~~~~~~~~~G~~lg~~~~~ 175 (490)
T PRK10642 144 AEYS----------PDRKRGFMGSWLDFGSIAGFVLGAGVVV 175 (490)
T ss_pred HHhC----------CCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8886 2455778777777666667666665543
No 68
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=97.00 E-value=0.0042 Score=61.25 Aligned_cols=99 Identities=18% Similarity=0.282 Sum_probs=73.9
Q ss_pred HHHHhhhcccee--eeccceeeeehhhhhHHHHhhccc--cc---ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhh
Q psy853 196 ALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY--PR---FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAK 268 (314)
Q Consensus 196 ~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y--p~---~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~ 268 (314)
...++.++.+.+ ++|.|+.+.++.+++.+......+ +. .+.++...++.|++.+..+.+...++.+..
T Consensus 263 ~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~----- 337 (418)
T TIGR00889 263 SEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEV----- 337 (418)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
Confidence 344455667766 999999999999887765433332 21 244567889999999988888888877765
Q ss_pred hcccchhhhHHHHHHHHH-HHHHhhHHHHHHHHHHhh
Q psy853 269 LTDQAVDAIIVRFFGFFF-LAWQTAELWGNLISSLET 304 (314)
Q Consensus 269 ~~~~~~~~~~gr~~giF~-~~~q~s~iiGnLIs~~il 304 (314)
.++.+++.+|+.. ..+.++.++|+++...+.
T Consensus 338 -----p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~ 369 (418)
T TIGR00889 338 -----PVHIRASAQGLFTLMCNGFGSLLGYILSGVMV 369 (418)
T ss_pred -----CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4678899999996 567889999998887654
No 69
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=96.99 E-value=0.0023 Score=65.93 Aligned_cols=143 Identities=16% Similarity=0.156 Sum_probs=99.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCChhhHHHHHHHHHHHHhhhccc----ee--eeccceeeeehhhhhH
Q psy853 150 RILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVP----TF--RLTVKWTLCVSMMCYL 223 (314)
Q Consensus 150 ~~l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~lG~~slailY~~~~is~~f~P----~I--~lG~K~sLvig~l~Y~ 223 (314)
+.++.+++.++.|.+..+++.++.-+-.. +.-+.|....+++++++.++.+.+. .+ +++.+..+.++.+.++
T Consensus 218 ~~l~~~l~~~~~~~l~~~a~~aLlPl~a~--~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a 295 (524)
T PF05977_consen 218 PPLRSVLLRSFLFNLFASAVWALLPLFAR--DVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFA 295 (524)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHhhhHHHH--HHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHH
Confidence 45777888888888777777766544322 1124456677777778777776554 44 6777777777887777
Q ss_pred HHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853 224 PYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302 (314)
Q Consensus 224 iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~ 302 (314)
+..+. .+-++.|..+++-++.|++....++...+.+-... .++.+||.++++..+...++.+|.++...
T Consensus 296 ~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~----------P~~~~GRv~si~~~~~~g~~~lGsll~G~ 365 (524)
T PF05977_consen 296 LALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSV----------PDWVRGRVFSIYQMVFFGGMPLGSLLWGF 365 (524)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65444 34456677777888888877776666555443332 57889999999999999999999888766
Q ss_pred hh
Q psy853 303 ET 304 (314)
Q Consensus 303 il 304 (314)
+.
T Consensus 366 la 367 (524)
T PF05977_consen 366 LA 367 (524)
T ss_pred HH
Confidence 53
No 70
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=96.98 E-value=0.0029 Score=60.64 Aligned_cols=101 Identities=15% Similarity=0.132 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc-cccceehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853 190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY 266 (314)
Q Consensus 190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y 266 (314)
.++....+.++.++.+.+ ++|.|+.+.++.+...+-..... -++.+.++...++.|++.+..++....+..+..
T Consensus 49 ~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~--- 125 (394)
T PRK11652 49 MAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLY--- 125 (394)
T ss_pred HHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---
Confidence 444444556666666666 99999999999887776554433 355667788889999998877665544443332
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy853 267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLIS 300 (314)
Q Consensus 267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs 300 (314)
+++.+++..+++......+.++|.++.
T Consensus 126 -------~~~~~~~~~~~~~~~~~~~~~~g~~i~ 152 (394)
T PRK11652 126 -------EGTQLRHANSLLNMGILVSPLLAPLIG 152 (394)
T ss_pred -------CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233455555555555555554444443
No 71
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=96.95 E-value=0.00077 Score=62.53 Aligned_cols=98 Identities=14% Similarity=0.066 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853 190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY 266 (314)
Q Consensus 190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y 266 (314)
.++.+....+++++...+ ++|.|+.++++.+...+-.... +-++.+.++..-++.|++.+..++...+++.+..
T Consensus 36 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--- 112 (379)
T TIGR00881 36 LSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWF--- 112 (379)
T ss_pred HHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhc---
Confidence 344455556666666666 9999999999988776554433 3356677788899999999999999988888775
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHhhHHHHH
Q psy853 267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGN 297 (314)
Q Consensus 267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGn 297 (314)
.++.+++..+++......+.++|.
T Consensus 113 -------~~~~r~~~~~~~~~~~~~g~~~~~ 136 (379)
T TIGR00881 113 -------SRSERGTWVSFWNCSHNVGGGLLP 136 (379)
T ss_pred -------CHhhheeeEeehhccchhHHHHHH
Confidence 244566666666666666666665
No 72
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=96.90 E-value=0.0022 Score=59.50 Aligned_cols=96 Identities=8% Similarity=-0.038 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853 190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY 266 (314)
Q Consensus 190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y 266 (314)
.++.+....++.++.+.+ ++|.|+++.++.+.+.+-... -+-++++.++.+-.+.|++.+..+.+.-.++.+..
T Consensus 44 ~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--- 120 (377)
T TIGR00890 44 FTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWF--- 120 (377)
T ss_pred HHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHc---
Confidence 344445555555666655 999999999988766554432 34466777788888999999988766555544332
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHhhHHHH
Q psy853 267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWG 296 (314)
Q Consensus 267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiG 296 (314)
++.+++..+++......+.+++
T Consensus 121 --------~~~~~~~~~~~~~~~~~g~~~~ 142 (377)
T TIGR00890 121 --------PDKRGLASGIIIGGYGLGSFIL 142 (377)
T ss_pred --------CcccHHHHHHHHHhcchhHhHH
Confidence 2346777777777766666543
No 73
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=96.89 E-value=0.0055 Score=58.74 Aligned_cols=100 Identities=12% Similarity=0.041 Sum_probs=73.1
Q ss_pred HHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc-cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhc
Q psy853 194 YAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLT 270 (314)
Q Consensus 194 Y~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~ 270 (314)
.....++..+...+ ++|.|+.++++.+.+.+-..... -++.+.++.+-.+.|++.+..|+...+++.+..
T Consensus 48 ~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~------- 120 (392)
T PRK10473 48 LAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTL------- 120 (392)
T ss_pred HHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHc-------
Confidence 33445555666665 99999999999887766554433 345566778889999999999998888877664
Q ss_pred ccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 271 DQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 271 ~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
+++.+++..++.......+.++|.++...+
T Consensus 121 ---~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l 150 (392)
T PRK10473 121 ---DDRRRAKVLSLLNGITCIIPVLAPVLGHLI 150 (392)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888888877777777766543
No 74
>PRK09848 glucuronide transporter; Provisional
Probab=96.86 E-value=0.0064 Score=59.85 Aligned_cols=102 Identities=15% Similarity=0.049 Sum_probs=67.6
Q ss_pred hhhcccee--eeccceeeeehhhhhHHHHhhc-ccc--cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccch
Q psy853 200 SCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYP--RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAV 274 (314)
Q Consensus 200 s~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp--~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~ 274 (314)
+..+.+.+ ++|.|..+++|.+...+-.... +.+ +.+.++++.++.|+|.+..++...+.+.+.......++ -
T Consensus 280 ~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~---g 356 (448)
T PRK09848 280 SAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLT---G 356 (448)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh---C
Confidence 44445545 8999999998876554322222 222 34455667788999999998877666655542111111 1
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 275 DAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 275 ~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
.+..|.++|.+....++++.+|..+...++
T Consensus 357 ~r~~G~~~~~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 357 VRIEGLTYSLFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235688899999999999999998887776
No 75
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=96.84 E-value=0.002 Score=60.07 Aligned_cols=95 Identities=20% Similarity=0.196 Sum_probs=69.9
Q ss_pred HHhhhcccee--eeccceeeeehhhhhHHHHhhcc-cccce--------ehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853 198 VLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-YPRFY--------TLVPAGILVGIGAAPMWAAKATYLTQVGAVY 266 (314)
Q Consensus 198 ~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-yp~~y--------~li~as~l~G~gagllW~aqg~ylt~~s~~y 266 (314)
.+++++...+ ++|.|+++.++.+.+.+-..... .++.. .++.+-++.|++.+..+++...++.+..
T Consensus 49 ~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~--- 125 (394)
T TIGR00883 49 PLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYA--- 125 (394)
T ss_pred hhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcC---
Confidence 4566666665 99999999999887765543322 23322 3677889999999999999888888775
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853 267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302 (314)
Q Consensus 267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~ 302 (314)
.++.+++..+++......+.++|+++...
T Consensus 126 -------~~~~r~~~~~~~~~~~~~G~~i~~~~~~~ 154 (394)
T TIGR00883 126 -------PPGKRGFYGSFQQVGAPVGLLLAALTVLL 154 (394)
T ss_pred -------CcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888888888888888887766543
No 76
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=96.84 E-value=0.0062 Score=58.12 Aligned_cols=88 Identities=16% Similarity=0.143 Sum_probs=66.6
Q ss_pred eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHH
Q psy853 208 RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFF 286 (314)
Q Consensus 208 ~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~ 286 (314)
++|.|+.+.++.+...+..... +.+..+.++...++.|++.+..++...+++...+ .++.+++.++++.
T Consensus 284 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~~~~ 353 (408)
T PRK09874 284 RIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNS----------SNQIAGRIFSYNQ 353 (408)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhC----------CcccceeeehHHH
Confidence 8999999988877665544332 2345566677888999999998888777765443 3567889999999
Q ss_pred HHHHhhHHHHHHHHHHhhh
Q psy853 287 LAWQTAELWGNLISSLETV 305 (314)
Q Consensus 287 ~~~q~s~iiGnLIs~~il~ 305 (314)
.+.+.+..+|.++...+..
T Consensus 354 ~~~~~g~~~gp~~~G~l~~ 372 (408)
T PRK09874 354 SFRDIGNVTGPLMGAAISA 372 (408)
T ss_pred HHHHHHHHhhHHHHHHHHh
Confidence 9999999999998876653
No 77
>PRK11043 putative transporter; Provisional
Probab=96.82 E-value=0.0081 Score=57.76 Aligned_cols=105 Identities=12% Similarity=0.020 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853 189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAV 265 (314)
Q Consensus 189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~ 265 (314)
..++.+....+++++...+ ++|.|+.++++.+.+.+-... .+-++.+.++.+-.+.|++.+..++...+++.+.-
T Consensus 46 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~-- 123 (401)
T PRK11043 46 SLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRY-- 123 (401)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--
Confidence 3444555566777777766 999999999988766543332 33456677788889999998877766555544432
Q ss_pred hhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 266 YAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 266 y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
.++.+++.++..+....++..+|.++...+
T Consensus 124 --------~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l 153 (401)
T PRK11043 124 --------PAQKANRVFATIMPLVALSPALAPLLGAWL 153 (401)
T ss_pred --------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234456666777766677766766665543
No 78
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=96.79 E-value=0.0065 Score=59.62 Aligned_cols=110 Identities=11% Similarity=0.047 Sum_probs=76.3
Q ss_pred ChhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHh
Q psy853 184 GLGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLT 260 (314)
Q Consensus 184 ~lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt 260 (314)
..-....++.+..++++.++...+ ++|+|+.+.++.+.+.+-... -+-++.+.++.+-++.|++.+...+....++.
T Consensus 51 ~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~ 130 (413)
T PRK15403 51 SLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQ 130 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777787777666 999999999998877654333 33456777888999999998865544333333
Q ss_pred hhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 261 QVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 261 ~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
+.- .++.++|..+++.....++.++|.++...+
T Consensus 131 ~~~----------~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l 163 (413)
T PRK15403 131 EAF----------GQTKGIKLMAIITSIVLVAPIIGPLSGAAL 163 (413)
T ss_pred Hhc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 245567778888888888888887776544
No 79
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=96.79 E-value=0.0071 Score=59.82 Aligned_cols=94 Identities=13% Similarity=0.039 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhccc-----ccceehhhhHHHhccCchhhhchhhhhHhhh
Q psy853 190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY-----PRFYTLVPAGILVGIGAAPMWAAKATYLTQV 262 (314)
Q Consensus 190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y-----p~~y~li~as~l~G~gagllW~aqg~ylt~~ 262 (314)
.++.+...+++.++.+.+ ++|.|+.++++.+.+.+....... .+.+.++..-++.|++.+..|+.....+.+.
T Consensus 69 ~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~ 148 (452)
T PRK11273 69 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW 148 (452)
T ss_pred HHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHh
Confidence 344455556666666666 999999999998877655443322 2344567777889999998887766665554
Q ss_pred hhhhhhhcccchhhhHHHHHHHHHHHHHhhH
Q psy853 263 GAVYAKLTDQAVDAIIVRFFGFFFLAWQTAE 293 (314)
Q Consensus 263 s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~ 293 (314)
. .++.+++..|++.....++.
T Consensus 149 ~----------~~~~r~~~~~~~~~~~~~g~ 169 (452)
T PRK11273 149 W----------SQKERGGIVSVWNCAHNVGG 169 (452)
T ss_pred C----------ChHHHHHHHHHHHHHHHhhh
Confidence 3 24557777777666555553
No 80
>PRK09952 shikimate transporter; Provisional
Probab=96.78 E-value=0.0077 Score=59.47 Aligned_cols=99 Identities=14% Similarity=0.130 Sum_probs=70.5
Q ss_pred HHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccce--------ehhhhHHHhccCchhhhchhhhhHh
Q psy853 192 AIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFY--------TLVPAGILVGIGAAPMWAAKATYLT 260 (314)
Q Consensus 192 ilY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y--------~li~as~l~G~gagllW~aqg~ylt 260 (314)
+.|....+++++.+.+ ++|.|+.+.++.+.+.+..+.. +-|+.+ .++..-.+.|++.|..|++...|+.
T Consensus 72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~ 151 (438)
T PRK09952 72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAV 151 (438)
T ss_pred HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence 4455566777777766 9999999999999888876543 445543 3677789999999999999988988
Q ss_pred hhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy853 261 QVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLIS 300 (314)
Q Consensus 261 ~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs 300 (314)
+.. .++.|++..+.....+.++.++|..+.
T Consensus 152 e~~----------p~~~rg~~~~~~~~g~~~G~~l~~~~~ 181 (438)
T PRK09952 152 ESA----------PKNKKAFYSSGVQVGYGVGLLLSTGLV 181 (438)
T ss_pred HhC----------CCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 765 233456666666655566665554433
No 81
>PRK09669 putative symporter YagG; Provisional
Probab=96.77 E-value=0.008 Score=59.20 Aligned_cols=106 Identities=8% Similarity=0.057 Sum_probs=72.6
Q ss_pred Hhhhcccee--eeccceeeeehhhhhHH-HHhhcccc--cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccc
Q psy853 199 LSCIFVPTF--RLTVKWTLCVSMMCYLP-YIGFQFYP--RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQA 273 (314)
Q Consensus 199 is~~f~P~I--~lG~K~sLvig~l~Y~i-yi~s~~yp--~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~ 273 (314)
++.++.+.+ |+|.|..+.++.++..+ .....+.+ +.+.+++..++.|++.+..+...-+.+++.......++
T Consensus 279 i~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~--- 355 (444)
T PRK09669 279 FGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRS--- 355 (444)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc---
Confidence 444556655 89999999888776653 32223332 34456778889999999999888888877653111111
Q ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhCC
Q psy853 274 VDAIIVRFFGFFFLAWQTAELWGNLISSLETVLP 307 (314)
Q Consensus 274 ~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~~ 307 (314)
-++.-|.+++++..+.++++.+|.++...++-.-
T Consensus 356 G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~ 389 (444)
T PRK09669 356 GRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV 389 (444)
T ss_pred CcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1334567788888888999999999888776543
No 82
>PRK12382 putative transporter; Provisional
Probab=96.71 E-value=0.014 Score=55.89 Aligned_cols=99 Identities=12% Similarity=0.072 Sum_probs=71.3
Q ss_pred HHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccc
Q psy853 197 LVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQA 273 (314)
Q Consensus 197 ~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~ 273 (314)
..++.++.+.+ ++|.|+.++++.....+-.... +.++.+..++..++.|++.+..+......+.+..
T Consensus 262 ~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~---------- 331 (392)
T PRK12382 262 FVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRV---------- 331 (392)
T ss_pred HHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc----------
Confidence 34555666665 9999999888776554433332 3455556677888899998887776555554443
Q ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853 274 VDAIIVRFFGFFFLAWQTAELWGNLISSLETV 305 (314)
Q Consensus 274 ~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~ 305 (314)
.++.+++..|++......+..+|+.+...+..
T Consensus 332 ~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~ 363 (392)
T PRK12382 332 PSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT 363 (392)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36779999999999999999999988876653
No 83
>PRK10489 enterobactin exporter EntS; Provisional
Probab=96.69 E-value=0.0047 Score=59.90 Aligned_cols=97 Identities=8% Similarity=-0.071 Sum_probs=67.2
Q ss_pred HHHhhhcccee--eeccceeeeehhhhhHHHHhh-----c-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhh
Q psy853 197 LVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-----Q-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAK 268 (314)
Q Consensus 197 ~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-----~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~ 268 (314)
..+++++.+.+ ++|.|+.++++.+..++-... + ..+..+.++...++.|++.+...++..+++.+..
T Consensus 65 ~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~----- 139 (417)
T PRK10489 65 MFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALV----- 139 (417)
T ss_pred HHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-----
Confidence 34444555555 999999999987655432211 1 1345566777888999998888877766665554
Q ss_pred hcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 269 LTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 269 ~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
.++.+++..+++....+++.++|..+...+
T Consensus 140 -----~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l 169 (417)
T PRK10489 140 -----GRENLMQAGAITMLTVRLGSVISPALGGLL 169 (417)
T ss_pred -----CHHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Confidence 245678888888888888888888776554
No 84
>PRK03699 putative transporter; Provisional
Probab=96.68 E-value=0.0046 Score=59.74 Aligned_cols=100 Identities=12% Similarity=0.044 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhh
Q psy853 191 SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYA 267 (314)
Q Consensus 191 ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~ 267 (314)
++.+..+.++.++.+.+ ++|.|+.++++.+...+-.... +.++.+.++.+-.+.|++.+..+.....++++..
T Consensus 49 s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~---- 124 (394)
T PRK03699 49 TFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVY---- 124 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhc----
Confidence 34455566677777776 9999999999887766554432 3356666778889999999988887777766553
Q ss_pred hhcccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy853 268 KLTDQAVDAIIVRFFGFFFLAWQTAELWGNLIS 300 (314)
Q Consensus 268 ~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs 300 (314)
.++.+++..++....+..+.++++++.
T Consensus 125 ------~~~~r~~~~~~~~~~~~~g~~~~~~~~ 151 (394)
T PRK03699 125 ------EGKQRGSRLLFTDSFFSMAGMIFPIIA 151 (394)
T ss_pred ------ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234456666655555555555555443
No 85
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=96.65 E-value=0.0065 Score=61.65 Aligned_cols=93 Identities=13% Similarity=0.048 Sum_probs=63.3
Q ss_pred cccee--e-eccceeeeehhhhhHHHHhhcccc-c-ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhh
Q psy853 203 FVPTF--R-LTVKWTLCVSMMCYLPYIGFQFYP-R-FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAI 277 (314)
Q Consensus 203 f~P~I--~-lG~K~sLvig~l~Y~iyi~s~~yp-~-~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~ 277 (314)
+...+ + +|.|+++++|.+.+.+-....... . ...++.+=++.|+|.|.+++...+.+.+.- ++ +++.
T Consensus 69 ~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~---p~-----~~~~ 140 (489)
T PRK10207 69 IGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCY---PP-----KDPR 140 (489)
T ss_pred hHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhc---CC-----Cchh
Confidence 34444 6 999999999999887755443332 2 223456778899999999988877776542 21 1224
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 278 IVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 278 ~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
+++.++++....+++..+|..+..++
T Consensus 141 ~~~~~~~~~~~~nig~~~g~~l~g~l 166 (489)
T PRK10207 141 LDGAFTLFYMSINIGSLISLSLAPVI 166 (489)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888877655443
No 86
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=96.64 E-value=0.028 Score=53.12 Aligned_cols=107 Identities=14% Similarity=0.116 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhhhcccee--ee-ccceeeeehhhhhHHHHhhccc-ccceehhhhHHHhccCchhhhchhhhhHhhhh
Q psy853 188 VSLSAIYAALVLSCIFVPTF--RL-TVKWTLCVSMMCYLPYIGFQFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQVG 263 (314)
Q Consensus 188 ~slailY~~~~is~~f~P~I--~l-G~K~sLvig~l~Y~iyi~s~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~~s 263 (314)
...++......+++++.+.+ |+ +.|+.+.++.+..++......+ +... .....++.|++.+..+...-..+.+..
T Consensus 236 ~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~~g~~~~~~~~~~~~~~ 314 (355)
T TIGR00896 236 SLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHG-LWAWALVLGLGQGGAFPLALTLIGLRS 314 (355)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHhhhhHhHHHHHHHHHhc
Confidence 34555566677777777766 88 4566666666555444333222 2222 222467889998888866444443222
Q ss_pred hhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 264 AVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 264 ~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
+.++..+...++...+..++..+|..+...+.
T Consensus 315 ---------~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~ 346 (355)
T TIGR00896 315 ---------RQAAQAAALSAMAQSIGYLLAALGPLFVGVLH 346 (355)
T ss_pred ---------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12456678888888888888888887766543
No 87
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=96.64 E-value=0.0066 Score=61.84 Aligned_cols=145 Identities=15% Similarity=0.224 Sum_probs=104.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHhhhhcccC-CCChhhHHHHHH----HHHHHHhhhcccee--eeccc--eeeeehhh
Q psy853 150 RILKNIGSLSLAFMVQFTAFQGTANLQSSINA-KEGLGTVSLSAI----YAALVLSCIFVPTF--RLTVK--WTLCVSMM 220 (314)
Q Consensus 150 ~~l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~-~~~lG~~slail----Y~~~~is~~f~P~I--~lG~K--~sLvig~l 220 (314)
|.++++...=+++|+.--++++...+..-... +-+.+...+.++ -.+..+++++.+.+ ++|+| .++.++.+
T Consensus 278 ~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~ 357 (477)
T PF11700_consen 278 RKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLI 357 (477)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 45778888888888877788877777544321 223333333333 34455566677777 99999 88888777
Q ss_pred hhHHHHh-hcc--------cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHh
Q psy853 221 CYLPYIG-FQF--------YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQT 291 (314)
Q Consensus 221 ~Y~iyi~-s~~--------yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~ 291 (314)
.+.+-.. +.+ ..+.+-.++.+++.|+..|..|+..-+++++.. .++..+.|+|+|-..-..
T Consensus 358 ~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~Li----------P~g~e~efFgly~i~gk~ 427 (477)
T PF11700_consen 358 LWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLI----------PPGREAEFFGLYAITGKA 427 (477)
T ss_pred HHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhC----------CCchhhHHHHHHHHHHHH
Confidence 7733322 222 344566788999999999999999999999887 345559999999999999
Q ss_pred hHHHHHHHHHHhh
Q psy853 292 AELWGNLISSLET 304 (314)
Q Consensus 292 s~iiGnLIs~~il 304 (314)
+.++|.++...+.
T Consensus 428 ss~lGPll~g~i~ 440 (477)
T PF11700_consen 428 SSWLGPLLFGLIT 440 (477)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877664
No 88
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=96.63 E-value=0.0081 Score=60.38 Aligned_cols=98 Identities=15% Similarity=0.104 Sum_probs=72.8
Q ss_pred HHhhhcccee--eeccceeeeehhhhhHHHH-hhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccch
Q psy853 198 VLSCIFVPTF--RLTVKWTLCVSMMCYLPYI-GFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAV 274 (314)
Q Consensus 198 ~is~~f~P~I--~lG~K~sLvig~l~Y~iyi-~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~ 274 (314)
+++.++...+ ++|.|+.++++.+.+.+.. .+.+-++.+.++.+-++.|+|.+.++++.-..+.+.- .+
T Consensus 55 ~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~---------~~ 125 (495)
T PRK14995 55 AGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATF---------TE 125 (495)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------CC
Confidence 3344444444 9999999999998887654 3345577888888999999999998876555443321 03
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 275 DAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 275 ~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
++.+++..|++......+.++|.++...+.
T Consensus 126 ~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~ 155 (495)
T PRK14995 126 EKQRNMALGVWAAVGSGGAAFGPLVGGILL 155 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567899999999999999999998876654
No 89
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=96.62 E-value=0.021 Score=54.90 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=65.3
Q ss_pred HHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccc
Q psy853 197 LVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQA 273 (314)
Q Consensus 197 ~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~ 273 (314)
..+..++.+.+ ++|.|+.++++.++.++.... .+-++.|.+++..++.|++.+..+++.-.|+.+..
T Consensus 253 ~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~---------- 322 (382)
T PRK11128 253 EVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAARP---------- 322 (382)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------
Confidence 33444555555 899999999888877764433 23455666788999999999999888777765543
Q ss_pred hhhhHHHHHHHHHHH-HHhhHHHHHHHHHHh
Q psy853 274 VDAIIVRFFGFFFLA-WQTAELWGNLISSLE 303 (314)
Q Consensus 274 ~~~~~gr~~giF~~~-~q~s~iiGnLIs~~i 303 (314)
++.+++..+.+..+ ...+..+|+++...+
T Consensus 323 -~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l 352 (382)
T PRK11128 323 -GSEVIRLQALYSALAMGGSIAIMTVLSGFL 352 (382)
T ss_pred -HhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457778877533 455556777766544
No 90
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=96.60 E-value=0.0032 Score=59.51 Aligned_cols=101 Identities=11% Similarity=0.097 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853 189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY 266 (314)
Q Consensus 189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y 266 (314)
..++.+..+.++.++.+.+ ++|.|+.+.++.++..+-.+....++.+.++.+.++.|++.+..+++...++.+..
T Consensus 40 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~--- 116 (355)
T TIGR00896 40 LTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIRSAPGTALLFAGTALIGVGIAIINVLLPSLIKRDF--- 116 (355)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccchHHHHHhC---
Confidence 3345556666777777776 99999999999887766554445677777888899999999988876655554332
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy853 267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLIS 300 (314)
Q Consensus 267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs 300 (314)
++.+++..+++......+..+|.++.
T Consensus 117 --------~~~~~~~~~~~~~~~~~g~~i~~~~~ 142 (355)
T TIGR00896 117 --------PQRVGLMTGLYSMALMGGAALAAAAT 142 (355)
T ss_pred --------cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 23466777777666666666555443
No 91
>PRK10489 enterobactin exporter EntS; Provisional
Probab=96.59 E-value=0.029 Score=54.41 Aligned_cols=98 Identities=15% Similarity=0.089 Sum_probs=66.1
Q ss_pred HHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccch
Q psy853 198 VLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAV 274 (314)
Q Consensus 198 ~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~ 274 (314)
.++.++.+.+ +.+.++.+.++.++..+.... .+.++.+.++....+.|++.+...+...+++.+.. .
T Consensus 273 ~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------p 342 (417)
T PRK10489 273 ALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQT----------P 342 (417)
T ss_pred HHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----------C
Confidence 3344455555 555666777766555444332 34555555667777888887776666666665554 4
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853 275 DAIIVRFFGFFFLAWQTAELWGNLISSLETV 305 (314)
Q Consensus 275 ~~~~gr~~giF~~~~q~s~iiGnLIs~~il~ 305 (314)
++.+++.+|++..+.++++.+|..+...+.-
T Consensus 343 ~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~ 373 (417)
T PRK10489 343 DEMLGRINGLWTAQNVTGDAIGAALLGGLGA 373 (417)
T ss_pred HHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Confidence 6789999999999999999999988776543
No 92
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=96.58 E-value=0.00062 Score=66.39 Aligned_cols=107 Identities=17% Similarity=0.301 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhccc-c---cceehhhhHHHhccCchhhhchhhhhHh
Q psy853 187 TVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY-P---RFYTLVPAGILVGIGAAPMWAAKATYLT 260 (314)
Q Consensus 187 ~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y-p---~~y~li~as~l~G~gagllW~aqg~ylt 260 (314)
....++.+....+++++.+.+ ++|.|+++.++.+.+.+..+...+ + +++.+.++-.+.|++.|..++....|++
T Consensus 49 ~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~ 128 (451)
T PF00083_consen 49 SLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYIS 128 (451)
T ss_pred HHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 345667777777888888877 999999999999988777655443 4 6788889999999999999999999999
Q ss_pred hhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 261 QVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 261 ~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
+.+ .++.|+++..++...+.+|.++|.++....
T Consensus 129 E~~----------~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 129 EIA----------PPKHRGFLSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred ccc----------cccccccccccccccccccccccccccccc
Confidence 997 466778887777766666766666665544
No 93
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=96.57 E-value=0.005 Score=58.20 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc-cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhh
Q psy853 191 SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYA 267 (314)
Q Consensus 191 ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~ 267 (314)
++......++.++...+ ++|.|+.++++.+...+...... .++.+.++....+.|++.+..++...+++.+..
T Consensus 33 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~---- 108 (377)
T PRK11102 33 SAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMF---- 108 (377)
T ss_pred HHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 34444455666666665 99999999999887766655433 355667788899999999999998888887765
Q ss_pred hhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 268 KLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 268 ~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
+++.+++..++.......+.++|.++...+
T Consensus 109 ------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 138 (377)
T PRK11102 109 ------PKEEFSRMMSFVTLVMTIAPLLAPIIGGWL 138 (377)
T ss_pred ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888887765543
No 94
>TIGR00898 2A0119 cation transport protein.
Probab=96.55 E-value=0.0037 Score=62.14 Aligned_cols=106 Identities=14% Similarity=0.190 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhh
Q psy853 187 TVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVG 263 (314)
Q Consensus 187 ~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s 263 (314)
....++.+....++.++...+ ++|.|+.++++.+...+.... .+-++.+.++..-++.|++.+..++....++.+..
T Consensus 130 ~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~ 209 (505)
T TIGR00898 130 DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFL 209 (505)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheec
Confidence 345556666677777777766 999999999998877665433 45677788889999999999999999999988775
Q ss_pred hhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853 264 AVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302 (314)
Q Consensus 264 ~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~ 302 (314)
.++.+++..++....+..+.+++.+++.+
T Consensus 210 ----------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 238 (505)
T TIGR00898 210 ----------PKKQRAIVGTLIQVFFSLGLVLLPLVAYF 238 (505)
T ss_pred ----------ChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888888888888888887776654
No 95
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=96.53 E-value=0.02 Score=62.72 Aligned_cols=95 Identities=7% Similarity=-0.013 Sum_probs=65.9
Q ss_pred HHhhhcccee--eeccceeeeehhhhhHHHHhhcc-cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccch
Q psy853 198 VLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAV 274 (314)
Q Consensus 198 ~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~ 274 (314)
.++.++.+.+ +++.+..+.++.++.++...... .++.+.+++..++.|++.+++++...+++.+.. .
T Consensus 283 ~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------p 352 (1146)
T PRK08633 283 GIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRA----------P 352 (1146)
T ss_pred HHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcC----------C
Confidence 3444455555 77777788877776655443333 345566678889999999999988888876665 3
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853 275 DAIIVRFFGFFFLAWQTAELWGNLISSL 302 (314)
Q Consensus 275 ~~~~gr~~giF~~~~q~s~iiGnLIs~~ 302 (314)
++.+++.+|+...+.+++.++|.++..+
T Consensus 353 ~~~rg~~~~~~~~~~~lg~~~~~~~~~~ 380 (1146)
T PRK08633 353 EKELGKVLAANNFLQNVGMLLFLALTTL 380 (1146)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888877666655543
No 96
>PRK09528 lacY galactoside permease; Reviewed
Probab=96.52 E-value=0.0066 Score=59.06 Aligned_cols=99 Identities=14% Similarity=0.034 Sum_probs=61.5
Q ss_pred HHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcc
Q psy853 195 AALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTD 271 (314)
Q Consensus 195 ~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~ 271 (314)
....++.++.+.+ |+|.|+.++++.+.+.+..... +.++.+.++...++.|++.+.+....-.|+.+..
T Consensus 273 ~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-------- 344 (420)
T PRK09528 273 FLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNF-------- 344 (420)
T ss_pred HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------
Confidence 3445666677777 9999999988888776654333 3456666777888888888887766655655442
Q ss_pred cchhhhHHHHHHH-HHHHHHhhHHHHHHHHHHh
Q psy853 272 QAVDAIIVRFFGF-FFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 272 ~~~~~~~gr~~gi-F~~~~q~s~iiGnLIs~~i 303 (314)
.++.++...+. +....+++.++|+.+...+
T Consensus 345 --~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l 375 (420)
T PRK09528 345 --DVRLSATIYLVGFQFAKQLGAVFLSTLAGNL 375 (420)
T ss_pred --CccceeeeeeehHHHHHHHHHHHHHHHHHHH
Confidence 12223333222 3334556666666665544
No 97
>PRK15011 sugar efflux transporter B; Provisional
Probab=96.51 E-value=0.0074 Score=58.37 Aligned_cols=102 Identities=8% Similarity=0.024 Sum_probs=63.1
Q ss_pred HHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhccc-ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhh
Q psy853 192 AIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAK 268 (314)
Q Consensus 192 ilY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~ 268 (314)
+..+...+++++...+ |+|.|+.+.++.+...+......+ .+.+..+..-++.+++.+..+.....++.+..
T Consensus 260 ~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~----- 334 (393)
T PRK15011 260 TAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLM----- 334 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----
Confidence 3344455566777766 999998887765544433322222 23333344445555655655544444444443
Q ss_pred hcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 269 LTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 269 ~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
++.+++..+++....+.+..+|++++..+.
T Consensus 335 ------p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~ 364 (393)
T PRK15011 335 ------PGQAGSATTLYTNTSRVGWIIAGSLAGIVA 364 (393)
T ss_pred ------CCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234788899998889999999998887654
No 98
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=96.51 E-value=0.016 Score=55.81 Aligned_cols=102 Identities=15% Similarity=0.025 Sum_probs=61.8
Q ss_pred HHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhc
Q psy853 194 YAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLT 270 (314)
Q Consensus 194 Y~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~ 270 (314)
.....++.++.+.+ ++|.|+.++++.+++.+-... .+.++.+.+++..++.|++........-.|..+..
T Consensus 264 ~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~------- 336 (396)
T TIGR00882 264 ELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQF------- 336 (396)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------
Confidence 33445555666666 999999999988877764444 34566777788888888776554332222322211
Q ss_pred ccchhhhHHHHHHH-HHHHHHhhHHHHHHHHHHhhh
Q psy853 271 DQAVDAIIVRFFGF-FFLAWQTAELWGNLISSLETV 305 (314)
Q Consensus 271 ~~~~~~~~gr~~gi-F~~~~q~s~iiGnLIs~~il~ 305 (314)
+++..+...+. +....+++.++|+++...++.
T Consensus 337 ---~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~ 369 (396)
T TIGR00882 337 ---DVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD 369 (396)
T ss_pred ---CcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH
Confidence 12222222333 446778888888877776654
No 99
>TIGR00898 2A0119 cation transport protein.
Probab=96.47 E-value=0.01 Score=58.93 Aligned_cols=94 Identities=11% Similarity=0.096 Sum_probs=60.9
Q ss_pred HHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccc--eehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhccc
Q psy853 198 VLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRF--YTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQ 272 (314)
Q Consensus 198 ~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~--y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~ 272 (314)
.++.++.+.+ ++|.|+.++++.+.-.+..... +.+.. +..+....+.+++.+..|.....|..+..
T Consensus 369 i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--------- 439 (505)
T TIGR00898 369 LPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY--------- 439 (505)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------
Confidence 3444555555 9999999988877655444332 22332 33455566667777777776666665553
Q ss_pred chhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy853 273 AVDAIIVRFFGFFFLAWQTAELWGNLISS 301 (314)
Q Consensus 273 ~~~~~~gr~~giF~~~~q~s~iiGnLIs~ 301 (314)
..+.+++..|+...+..++.++|+.+..
T Consensus 440 -p~~~r~~~~g~~~~~~~ig~~i~p~i~~ 467 (505)
T TIGR00898 440 -PTVVRNLGVGVCSTMARVGSIISPFLVY 467 (505)
T ss_pred -cHHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence 2456777788888888888888876655
No 100
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=96.46 E-value=0.013 Score=58.30 Aligned_cols=65 Identities=15% Similarity=0.054 Sum_probs=52.0
Q ss_pred ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 230 FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 230 ~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
+.++.+.++...++.|++.+..+....+.+.+.. .++.+++..|++..+.++++++|..+...+.
T Consensus 329 ~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~----------~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~ 393 (455)
T TIGR00892 329 LAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLV----------GAQRFSSAVGLVTIVECCAVLIGPPLAGRLV 393 (455)
T ss_pred HhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHh----------hHHHHhhHHhHHHHHHHHHHHccccceeeee
Confidence 3455666778899999999999888777776654 3567899999999999999999998877554
No 101
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=96.46 E-value=0.0026 Score=50.21 Aligned_cols=96 Identities=17% Similarity=0.150 Sum_probs=72.5
Q ss_pred Hhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchh
Q psy853 199 LSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVD 275 (314)
Q Consensus 199 is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~ 275 (314)
++.++.+.+ ++|.|+.++++.....+..... +.++.+.++....+.|++.+..++....++.+.. .+
T Consensus 13 ~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~ 82 (141)
T TIGR00880 13 IYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIY----------PP 82 (141)
T ss_pred HHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC----------Ch
Confidence 344445544 8999999988877665544333 2345566677889999999999988888877765 35
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 276 AIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 276 ~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
+.+++..++.....+.+..+|..+...+.
T Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (141)
T TIGR00880 83 EERGVALGLMSAGIALGPLLGPPLGGVLA 111 (141)
T ss_pred hhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence 67889999999999999999998887665
No 102
>PRK10504 putative transporter; Provisional
Probab=96.44 E-value=0.029 Score=55.18 Aligned_cols=94 Identities=14% Similarity=0.036 Sum_probs=66.7
Q ss_pred hcccee--eeccceeeeehhhhhHHHHhhcccc---cc-eehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchh
Q psy853 202 IFVPTF--RLTVKWTLCVSMMCYLPYIGFQFYP---RF-YTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVD 275 (314)
Q Consensus 202 ~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp---~~-y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~ 275 (314)
++.+.+ ++|.|+.++++.++..+........ .+ +.+....++.|++.++.+.....++.+.. .+
T Consensus 315 ~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~ 384 (471)
T PRK10504 315 RIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDL----------PD 384 (471)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CH
Confidence 445555 8999999998888666554333221 22 22344567778888888888777765543 35
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853 276 AIIVRFFGFFFLAWQTAELWGNLISSLETV 305 (314)
Q Consensus 276 ~~~gr~~giF~~~~q~s~iiGnLIs~~il~ 305 (314)
+.+++.++++....+++..+|..+...++-
T Consensus 385 ~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~ 414 (471)
T PRK10504 385 NLASSGNSLLSMIMQLSMSIGVTIAGLLLG 414 (471)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999988776653
No 103
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=96.37 E-value=0.012 Score=59.80 Aligned_cols=95 Identities=9% Similarity=0.095 Sum_probs=61.3
Q ss_pred hcccee--e-eccceeeeehhhhhHHHHhhc-ccc-cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhh
Q psy853 202 IFVPTF--R-LTVKWTLCVSMMCYLPYIGFQ-FYP-RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDA 276 (314)
Q Consensus 202 ~f~P~I--~-lG~K~sLvig~l~Y~iyi~s~-~yp-~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~ 276 (314)
.+...+ + +|.|+++++|.+.+.+-.... +.+ ..+.++.+-++.|+|.|+..+...+++.+.- ++ +++
T Consensus 75 ~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f---~~-----~~~ 146 (500)
T PRK09584 75 AIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCY---EK-----DDP 146 (500)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhc---CC-----Cch
Confidence 344555 7 699999999988777543322 222 2334556668899999999887777765542 11 122
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 277 IIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 277 ~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
.+.+.+++++.....+.++|.++...+.
T Consensus 147 ~~~~~~~~~~~~~~iG~~~gp~i~g~l~ 174 (500)
T PRK09584 147 RLDGAFTMYYMSINIGSFFSMLATPWLA 174 (500)
T ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777888877777766543
No 104
>PRK03699 putative transporter; Provisional
Probab=96.30 E-value=0.035 Score=53.61 Aligned_cols=105 Identities=11% Similarity=0.039 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhh
Q psy853 191 SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYA 267 (314)
Q Consensus 191 ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~ 267 (314)
++......++.++.+.+ |++.|+.++...+.-.+..... ..++.+.+.+...+.|++.+..|...-++..+..
T Consensus 248 ~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~---- 323 (394)
T PRK03699 248 SNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQT---- 323 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 44445567777777777 9999998877665443322222 2334444556677888877777766554443322
Q ss_pred hhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhC
Q psy853 268 KLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVL 306 (314)
Q Consensus 268 ~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~ 306 (314)
++..++..|......+++..+|..+...+.-.
T Consensus 324 -------~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~ 355 (394)
T PRK03699 324 -------KVASPKLVNFILTCGTIGTMLTFVVTSPIVAH 355 (394)
T ss_pred -------cCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 11223446777777888998888887766543
No 105
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=96.29 E-value=0.022 Score=62.81 Aligned_cols=63 Identities=10% Similarity=-0.075 Sum_probs=50.3
Q ss_pred ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 232 PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 232 p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
+..|.++++.++.|++.+...+...+++.+.+ .++.+||..|++..+.++++.+|.++...+.
T Consensus 332 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 332 RHGWRILIDLFGLAAAGGLYIVPLFAALQAWA----------NPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred cccHHHHHHHHHHHHHHHHhHHHHHHHHHhhC----------CcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566678888999999999988777776665 4778999999999999998888888776553
No 106
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=96.28 E-value=0.022 Score=56.63 Aligned_cols=97 Identities=13% Similarity=-0.010 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhh-HHHhccCchhhhchhhhhHhhhhhhh
Q psy853 191 SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPA-GILVGIGAAPMWAAKATYLTQVGAVY 266 (314)
Q Consensus 191 ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~a-s~l~G~gagllW~aqg~ylt~~s~~y 266 (314)
++.+....++..+...+ ++|.|+.++++.+...+..+.. +.++.+.++.. .++.|++.+..+.....++.+.-
T Consensus 61 s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~--- 137 (455)
T TIGR00892 61 SIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYF--- 137 (455)
T ss_pred HHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH---
Confidence 34444456666666655 9999999999887666544332 34555655544 47889999987765544443332
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy853 267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNL 298 (314)
Q Consensus 267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnL 298 (314)
++.+++..|+.......+..+|+.
T Consensus 138 --------~~~r~~a~g~~~~~~~~g~~~~~~ 161 (455)
T TIGR00892 138 --------YRRRPLANGLAMAGSPVFLSTLAP 161 (455)
T ss_pred --------HhhHHHHHHHHHhcccHHHHHHHH
Confidence 223556666655555544444433
No 107
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=96.28 E-value=0.033 Score=54.18 Aligned_cols=107 Identities=13% Similarity=0.051 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHhhhcccee------eeccceeeeehhhhhH-H-HHhhcccccceehhhhHHHhccCchhhhchhhhh
Q psy853 187 TVSLSAIYAALVLSCIFVPTF------RLTVKWTLCVSMMCYL-P-YIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATY 258 (314)
Q Consensus 187 ~~slailY~~~~is~~f~P~I------~lG~K~sLvig~l~Y~-i-yi~s~~yp~~y~li~as~l~G~gagllW~aqg~y 258 (314)
....+.++....++.++...+ +. .|..++++.+.+. + +....+.+..+.++.+.++.|++.+.....-.++
T Consensus 251 ~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~ 329 (394)
T PRK10213 251 VDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTW 329 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 333444555555555444433 43 3444444433322 2 1222233445666778888998888777776666
Q ss_pred HhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853 259 LTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETV 305 (314)
Q Consensus 259 lt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~ 305 (314)
+.+.. ++..++..++...+++++..+|.++...+.-
T Consensus 330 ~~~~~-----------~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~ 365 (394)
T PRK10213 330 ITRSL-----------ADQAEKAGSIQVAVIQLANTCGAAIGGYALD 365 (394)
T ss_pred HHHHC-----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66553 2335566777888889999999999887654
No 108
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=96.23 E-value=0.011 Score=65.06 Aligned_cols=105 Identities=14% Similarity=0.037 Sum_probs=77.5
Q ss_pred HHHHHHHHHhhhcccee--eeccceeeee---hhhhhHH-HHhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhh
Q psy853 191 SAIYAALVLSCIFVPTF--RLTVKWTLCV---SMMCYLP-YIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGA 264 (314)
Q Consensus 191 ailY~~~~is~~f~P~I--~lG~K~sLvi---g~l~Y~i-yi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~ 264 (314)
++....+.++++++..+ ++|.|+.|.+ ..+.... ...++..++.+.++.+.++.|++.+..|++..+++.+.-
T Consensus 59 ~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~- 137 (1140)
T PRK06814 59 AVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHL- 137 (1140)
T ss_pred HHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhc-
Confidence 33444456677777766 9999987533 2222222 223334477888999999999999999999999887775
Q ss_pred hhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853 265 VYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETV 305 (314)
Q Consensus 265 ~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~ 305 (314)
.++.+++..|++....+++.++|.++..++.-
T Consensus 138 ---------~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~ 169 (1140)
T PRK06814 138 ---------NKDELLGANALVEAGTFIAILLGTIIGGLATI 169 (1140)
T ss_pred ---------CccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678899999999999999999988887643
No 109
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=96.18 E-value=0.024 Score=56.38 Aligned_cols=93 Identities=18% Similarity=0.280 Sum_probs=71.8
Q ss_pred hcccee--eeccceeeeehhhhhHHHHhhccc--cccee----hhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccc
Q psy853 202 IFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY--PRFYT----LVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQA 273 (314)
Q Consensus 202 ~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y--p~~y~----li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~ 273 (314)
++.+.+ |+|.|+.|.++.++|++=.....+ +++|. ++.+-.+.|+.-+.+|++.-.|+.+.+
T Consensus 261 ~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~---------- 330 (400)
T PF03825_consen 261 FFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIA---------- 330 (400)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC----------
Confidence 455665 999999999999999887655433 23333 244556799999999999999998887
Q ss_pred hhhhHHHHHHHHHHHH-HhhHHHHHHHHHHhh
Q psy853 274 VDAIIVRFFGFFFLAW-QTAELWGNLISSLET 304 (314)
Q Consensus 274 ~~~~~gr~~giF~~~~-q~s~iiGnLIs~~il 304 (314)
.++.+++..+++.++. -+|..+|++++..+.
T Consensus 331 p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~ 362 (400)
T PF03825_consen 331 PPELRATAQGLYSALSFGLGGAIGSLIGGWLY 362 (400)
T ss_pred CccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4678888889888764 588899998887654
No 110
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=96.17 E-value=0.0095 Score=61.28 Aligned_cols=97 Identities=10% Similarity=0.054 Sum_probs=79.2
Q ss_pred HHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcccc-cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcc
Q psy853 195 AALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFYP-RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTD 271 (314)
Q Consensus 195 ~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp-~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~ 271 (314)
..++++-+.+..+ ++|+|+.++++.+...++.+...+. ..+.+.+.=++.|++.|..| +...|+...-
T Consensus 73 ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~Wf-------- 143 (511)
T TIGR00806 73 YSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLV-------- 143 (511)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC--------
Confidence 3344455555555 9999999999999998888776665 45667888899999999999 8888876654
Q ss_pred cchhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853 272 QAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302 (314)
Q Consensus 272 ~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~ 302 (314)
.++.++|.+|++-+...+|.++|.+++..
T Consensus 144 --P~kER~ratsi~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 144 --PPSRYQRAAAYSRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999988887
No 111
>PRK10054 putative transporter; Provisional
Probab=96.16 E-value=0.026 Score=55.01 Aligned_cols=85 Identities=6% Similarity=0.067 Sum_probs=56.9
Q ss_pred eeccceeeeehhhhhHHHHhhccc--ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHH
Q psy853 208 RLTVKWTLCVSMMCYLPYIGFQFY--PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFF 285 (314)
Q Consensus 208 ~lG~K~sLvig~l~Y~iyi~s~~y--p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF 285 (314)
+.+.|..+.++.+.+.+....... .+.+.++++.++.|+|.+..++.+-.++.+.+ .++.++++++..
T Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~----------p~~~~~~~~~~~ 339 (395)
T PRK10054 270 AANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIA----------PPGMKASYFSAQ 339 (395)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC----------CcccceehHhHH
Confidence 678888888887666665544433 23455677889999999888887777776665 345566777654
Q ss_pred HHHHHhhHHHHHHHHHHh
Q psy853 286 FLAWQTAELWGNLISSLE 303 (314)
Q Consensus 286 ~~~~q~s~iiGnLIs~~i 303 (314)
. ....+..+|+.+...+
T Consensus 340 ~-~~~~G~~~Gp~~~G~l 356 (395)
T PRK10054 340 S-LGWLGAAINPLVSGVI 356 (395)
T ss_pred H-HHHHHHHHHHHHHHHH
Confidence 3 4446667777665544
No 112
>PTZ00207 hypothetical protein; Provisional
Probab=96.01 E-value=0.026 Score=59.28 Aligned_cols=88 Identities=8% Similarity=-0.174 Sum_probs=62.2
Q ss_pred HHhhhcccee--eeccceeeeehhhhhHHHHhhcc-------cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhh
Q psy853 198 VLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-------YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAK 268 (314)
Q Consensus 198 ~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-------yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~ 268 (314)
.++.++...+ ++|+|+.+++|.+.+.+-..... .++.+.+++.-++.|+|.+.++++.-..+.+.-
T Consensus 75 g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~F----- 149 (591)
T PTZ00207 75 GYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVF----- 149 (591)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----
Confidence 3344444444 99999999999886655443322 246677788888999999999887665554432
Q ss_pred hcccchhhhHHHHHHHHHHHHHhhHHHH
Q psy853 269 LTDQAVDAIIVRFFGFFFLAWQTAELWG 296 (314)
Q Consensus 269 ~~~~~~~~~~gr~~giF~~~~q~s~iiG 296 (314)
++.+|+..|+......+|..+.
T Consensus 150 ------p~~RG~a~Gi~~~~~gLGsaI~ 171 (591)
T PTZ00207 150 ------PSNRGAVVAIMKTFTGLGSAIL 171 (591)
T ss_pred ------hhhhHHHHHHHHHHHHHHHHHH
Confidence 3567899999988888888643
No 113
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=95.87 E-value=0.14 Score=49.60 Aligned_cols=98 Identities=10% Similarity=0.060 Sum_probs=58.3
Q ss_pred HHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc-cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhccc
Q psy853 196 ALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQ 272 (314)
Q Consensus 196 ~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~ 272 (314)
...++.++.+.+ ++|.|..++++.....+-..... .+.....+ ...+.|++.+..+........+..
T Consensus 252 ~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~~~~~--------- 321 (393)
T PRK09705 252 GQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL-WAMVCGLGLGGAFPLCLLLALDHS--------- 321 (393)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH-HHHHHHHhccchHHHHHHHHHhhc---------
Confidence 345555666666 88988888777655544433322 23221112 234567777666554333322222
Q ss_pred chhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 273 AVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 273 ~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
+.++.+++.+|....+.+++..+|..+...+
T Consensus 322 ~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l 352 (393)
T PRK09705 322 VQPAIAGKLVAFMQGIGFIIAGLAPWFSGVL 352 (393)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1245788999999999998888888776654
No 114
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=95.84 E-value=0.055 Score=54.49 Aligned_cols=62 Identities=18% Similarity=0.131 Sum_probs=52.2
Q ss_pred hcccee--eeccceeeeehhhhhHHHHh-hcccccceehhhhHHHhccCchhhhchhhhhHhhhh
Q psy853 202 IFVPTF--RLTVKWTLCVSMMCYLPYIG-FQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVG 263 (314)
Q Consensus 202 ~f~P~I--~lG~K~sLvig~l~Y~iyi~-s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s 263 (314)
+++|.+ |+|+|+.|++++.+.++=+. +.+.++.+.+.+.-.+.|+--+++.++.=.|+++.-
T Consensus 277 ~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~f 341 (412)
T PF01306_consen 277 FFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHF 341 (412)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 577887 99999999999999888664 467888899999999999999999999999998775
No 115
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=95.80 E-value=0.021 Score=61.34 Aligned_cols=98 Identities=17% Similarity=0.096 Sum_probs=71.5
Q ss_pred HHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccc
Q psy853 197 LVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQA 273 (314)
Q Consensus 197 ~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~ 273 (314)
..++.+++..+ ++|.|++++++.++-++..+.. +.+..+.++...++.|+..+..|.+...|+++..
T Consensus 608 ~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~---------- 677 (742)
T TIGR01299 608 VLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY---------- 677 (742)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------
Confidence 34444555554 9999999988877666654432 3344455666667888888889998888887764
Q ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 274 VDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 274 ~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
..+.|++.+|+..++..++.++|+++...++
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~ 708 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFV 708 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2456899999999999999999998876443
No 116
>PRK12307 putative sialic acid transporter; Provisional
Probab=95.74 E-value=0.036 Score=53.54 Aligned_cols=103 Identities=17% Similarity=0.106 Sum_probs=57.4
Q ss_pred HHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc-cccceehhhhHHHhccCch--hhhchhhhhHhhhhhhh
Q psy853 192 AIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-YPRFYTLVPAGILVGIGAA--PMWAAKATYLTQVGAVY 266 (314)
Q Consensus 192 ilY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-yp~~y~li~as~l~G~gag--llW~aqg~ylt~~s~~y 266 (314)
+......++.++.+.+ ++|.|+.++++.+.-.+...... .+.........++.|++.. ..+.....++.+..
T Consensus 274 ~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 350 (426)
T PRK12307 274 AAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYF--- 350 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhC---
Confidence 3334445555566655 89999888877655444333222 1221112223333333221 11222223333332
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
.++.+++..|+.+.+..++.++|+++...+.
T Consensus 351 -------p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~ 381 (426)
T PRK12307 351 -------PLEVRGLGTGLIYNLAATSGTFNSMAATWLG 381 (426)
T ss_pred -------cHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 3567899999999999999999998876554
No 117
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=95.74 E-value=0.48 Score=47.67 Aligned_cols=150 Identities=11% Similarity=0.105 Sum_probs=76.8
Q ss_pred CcccccchhhhhhhHHHHHHHHHHHHHHHH-HHhHHhhhhccc-CCCC----hhhHHHHHHHHHHHHhhhccce-e-eec
Q psy853 139 GKFKMSTKEKWRILKNIGSLSLAFMVQFTA-FQGTANLQSSIN-AKEG----LGTVSLSAIYAALVLSCIFVPT-F-RLT 210 (314)
Q Consensus 139 ~~~~~~~~~k~~~l~Nvi~lsi~F~l~ftA-f~~~~~LqSSin-~~~~----lG~~slailY~~~~is~~f~P~-I-~lG 210 (314)
...+.+.+||++..|..+..-+=.++.|.+ |.-.|++...+. ..+. .=|....++| -++-|+.-+ + .+.
T Consensus 229 ~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~Y---Q~GVFISRSS~~~~r 305 (402)
T PF02487_consen 229 SSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLY---QLGVFISRSSLPFFR 305 (402)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHH---HHHHhhhhcceeeee
Confidence 344567778888777766533333333333 333334433321 1001 1122333333 345555533 3 555
Q ss_pred cceeeeehhhhhHHHHh---h---cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHH
Q psy853 211 VKWTLCVSMMCYLPYIG---F---QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGF 284 (314)
Q Consensus 211 ~K~sLvig~l~Y~iyi~---s---~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~gi 284 (314)
.|+.-+++.+-....+. . ++.|+.|.+++-....|+-+|..++-.-.- ..++.++++|..-.|+
T Consensus 306 ir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~----------I~~~~~~~~REFslg~ 375 (402)
T PF02487_consen 306 IRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYR----------ISEEVPPEDREFSLGA 375 (402)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH----------HHhcCCHHHHHHHHHH
Confidence 56655555443222221 1 345778888888888887777766443222 2222345566666666
Q ss_pred HHHHHHhhHHHHHHHHH
Q psy853 285 FFLAWQTAELWGNLISS 301 (314)
Q Consensus 285 F~~~~q~s~iiGnLIs~ 301 (314)
--..-..|-+++++++.
T Consensus 376 vsvsds~GI~lAgll~l 392 (402)
T PF02487_consen 376 VSVSDSLGILLAGLLGL 392 (402)
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 66666666666666654
No 118
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=95.66 E-value=0.047 Score=50.89 Aligned_cols=101 Identities=5% Similarity=-0.075 Sum_probs=58.3
Q ss_pred HHHHHHhhhcccee--eeccceeeeehhhhhHHHH----hhcc-cccceehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853 194 YAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYI----GFQF-YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY 266 (314)
Q Consensus 194 Y~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi----~s~~-yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y 266 (314)
.....++.++.+.+ ++|.|+.+.++.....+.. .... ....+.++...++.|++.+..+...-.++.+..
T Consensus 265 ~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--- 341 (394)
T TIGR00883 265 LILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELF--- 341 (394)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhC---
Confidence 33444455555555 8999987775443322211 1111 123444566677788888888887777766654
Q ss_pred hhhcccchhhhHHHHHHHHHHH-HHhhHHHHHHHHHHhh
Q psy853 267 AKLTDQAVDAIIVRFFGFFFLA-WQTAELWGNLISSLET 304 (314)
Q Consensus 267 ~~~~~~~~~~~~gr~~giF~~~-~q~s~iiGnLIs~~il 304 (314)
.++.+++..++.+.+ ...+..+|.++...+.
T Consensus 342 -------p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~ 373 (394)
T TIGR00883 342 -------PTEVRYTGASLAYNLAGAIFGGFAPYIAAALV 373 (394)
T ss_pred -------CccceeeEeeehhHhHHHHHhhHHHHHHHHHH
Confidence 245566777764433 3456667776665543
No 119
>PRK03545 putative arabinose transporter; Provisional
Probab=95.55 E-value=0.23 Score=47.63 Aligned_cols=97 Identities=10% Similarity=0.075 Sum_probs=55.2
Q ss_pred HHHHhhhcccee--eeccceeeeehhhhh-HHH-HhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcc
Q psy853 196 ALVLSCIFVPTF--RLTVKWTLCVSMMCY-LPY-IGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTD 271 (314)
Q Consensus 196 ~~~is~~f~P~I--~lG~K~sLvig~l~Y-~iy-i~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~ 271 (314)
...++.++.+.+ ++|.|.. .++.... ... .....-++.+.+++..++.|++.+.+=.....++.+..
T Consensus 253 ~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-------- 323 (390)
T PRK03545 253 AGIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLA-------- 323 (390)
T ss_pred HHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhC--------
Confidence 344455555555 7776653 3333322 111 11122334455566777777765433222223332222
Q ss_pred cchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 272 QAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 272 ~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
++.+++..|++..+++.++.+|.++...+.
T Consensus 324 ---~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~ 353 (390)
T PRK03545 324 ---PDATDVAMALFSGIFNIGIGAGALLGNQVS 353 (390)
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999988877654
No 120
>PRK11663 regulatory protein UhpC; Provisional
Probab=95.46 E-value=0.24 Score=48.74 Aligned_cols=30 Identities=10% Similarity=-0.168 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 275 DAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 275 ~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
++.+++..|+...+.+++.++|..+...+.
T Consensus 368 ~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~ 397 (434)
T PRK11663 368 KEAAGAATGFVGLFAYLGAALSGYPLAKVL 397 (434)
T ss_pred HhhHHhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 567889999999999999999887766543
No 121
>KOG4686|consensus
Probab=95.37 E-value=0.095 Score=51.31 Aligned_cols=104 Identities=11% Similarity=0.126 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcccccceehhhhHHHhccCchh----hhchhhhhHh
Q psy853 187 TVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAP----MWAAKATYLT 260 (314)
Q Consensus 187 ~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp~~y~li~as~l~G~gagl----lW~aqg~ylt 260 (314)
..-++++|+..++.+-+...| +.|.|...+.++..-.+--=+.+.-..+..+.+..++|+..++ +|......+
T Consensus 303 ~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGLsysllAcslWP~va~~v- 381 (459)
T KOG4686|consen 303 GNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFLGLSYSLLACSLWPCVASLV- 381 (459)
T ss_pred cchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHHhhhHHHHHHHHhhhhhhhC-
Confidence 345778898888887666666 9999999998877655555555666778888999999999866 676665554
Q ss_pred hhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 261 QVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 261 ~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
.|+..|...|.-+++.+++..+-.+|+.+++
T Consensus 382 -------------pE~qLGTaygf~qsIqNLgla~i~Iiag~i~ 412 (459)
T KOG4686|consen 382 -------------PEEQLGTAYGFIQSIQNLGLAFIPIIAGFIA 412 (459)
T ss_pred -------------CHHHhcchHHHHHHHHhhhhhHHhhhhheee
Confidence 3556888899999999999988888887664
No 122
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=95.35 E-value=0.059 Score=52.78 Aligned_cols=103 Identities=13% Similarity=0.097 Sum_probs=70.2
Q ss_pred HHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc---ccc--ceehhhhHHHhccCchhhhchhhhhHhhhhh
Q psy853 192 AIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF---YPR--FYTLVPAGILVGIGAAPMWAAKATYLTQVGA 264 (314)
Q Consensus 192 ilY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~---yp~--~y~li~as~l~G~gagllW~aqg~ylt~~s~ 264 (314)
.......++.++.+.+ ++|.|+.+.++.+..++-..... .+. .+.++...++.|+|.+..+........+..
T Consensus 299 ~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~- 377 (485)
T TIGR00711 299 PVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGL- 377 (485)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 3344455555666655 99999988888766554433322 122 334566678899999988876555433322
Q ss_pred hhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 265 VYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 265 ~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
.++.+++..|++..+.+++..+|..+...++
T Consensus 378 ---------~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~ 408 (485)
T TIGR00711 378 ---------PPHKIARGSSLSNFTRQLGGSIGTALITTIL 408 (485)
T ss_pred ---------CHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999999999988777665
No 123
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=95.33 E-value=0.045 Score=55.04 Aligned_cols=105 Identities=12% Similarity=0.131 Sum_probs=79.1
Q ss_pred HHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc----cccceehhhhHHHhccCchhhhchhhhhHhhhhh
Q psy853 191 SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF----YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGA 264 (314)
Q Consensus 191 ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~----yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~ 264 (314)
.+.|+.+.+.++-++.+ |+|.|..+++|...|++-..-++ +-.+...+.+-.+.|.|.+.+=++...|++....
T Consensus 55 faff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~ 134 (422)
T COG0738 55 FAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGK 134 (422)
T ss_pred HHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCC
Confidence 34455555555556655 99999999999999888766654 2223445667789999999999999999999983
Q ss_pred hhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853 265 VYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETV 305 (314)
Q Consensus 265 ~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~ 305 (314)
+++..+-.++-.+++.+|.++|.++......
T Consensus 135 ----------~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 135 ----------PESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred ----------chhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4455566778888889999999977655443
No 124
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=95.24 E-value=0.22 Score=50.99 Aligned_cols=149 Identities=14% Similarity=0.108 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhh-----cccCCCChhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHH
Q psy853 153 KNIGSLSLAFMVQFTAFQGTANLQS-----SINAKEGLGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPY 225 (314)
Q Consensus 153 ~Nvi~lsi~F~l~ftAf~~~~~LqS-----Sin~~~~lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iy 225 (314)
|+.+.+.+.+++.+++++=...+.- -++..+...+..+...-....++.++.|.+ ++|.|+.+.++.+.+++=
T Consensus 236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~ 315 (467)
T COG2211 236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVG 315 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHH
Confidence 3556666677777877774433321 112222222233333333334445677777 999999999998877665
Q ss_pred Hhhcc-cc--cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853 226 IGFQF-YP--RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302 (314)
Q Consensus 226 i~s~~-yp--~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~ 302 (314)
-+.++ .| +.+.++.+.++.|+|.+..+.-+=+-+.+.. .|-|. |+..+.-|-++++.-.+..+++.+|+.++..
T Consensus 316 ~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~v-Dyge~--~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 316 YLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTV-DYGEW--KTGVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred HHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchh-hHHHH--HhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544 34 2344566667766666665555444444433 12111 1123345666777777788888888877777
Q ss_pred hh
Q psy853 303 ET 304 (314)
Q Consensus 303 il 304 (314)
+|
T Consensus 393 ~L 394 (467)
T COG2211 393 IL 394 (467)
T ss_pred HH
Confidence 76
No 125
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=95.20 E-value=0.073 Score=53.52 Aligned_cols=98 Identities=13% Similarity=-0.037 Sum_probs=68.4
Q ss_pred HHHhhhcccee--eeccceeeeehhhhhHHHHhh--cc--cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhc
Q psy853 197 LVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF--QF--YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLT 270 (314)
Q Consensus 197 ~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s--~~--yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~ 270 (314)
..++..+.+.+ ++|.|+.+++|.+..++-... .. .+..+.+++..++.|+|.+..+......+....
T Consensus 308 ~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~------- 380 (495)
T PRK14995 308 SGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAA------- 380 (495)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-------
Confidence 44455555555 999999888777655433221 11 233444567788999999988876666554443
Q ss_pred ccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 271 DQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 271 ~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
.++.+++..+++...++++..+|..+...++
T Consensus 381 ---~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~ 411 (495)
T PRK14995 381 ---PPEKAAAAGAIETMAYELGAGLGIAIFGLLL 411 (495)
T ss_pred ---CHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999998877765
No 126
>KOG2532|consensus
Probab=95.19 E-value=0.017 Score=58.89 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=67.2
Q ss_pred eeccceeeeehhhhhHHHHhhccccc-----ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHH
Q psy853 208 RLTVKWTLCVSMMCYLPYIGFQFYPR-----FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFF 282 (314)
Q Consensus 208 ~lG~K~sLvig~l~Y~iyi~s~~yp~-----~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~ 282 (314)
++|.|+.+.++.+.-++ +..+.|. .|.+++.=++.|++.|..|++.+..+.+-+ ..++++++.
T Consensus 99 k~G~r~v~~~~~~~sa~--~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~----------P~~Ers~~~ 166 (466)
T KOG2532|consen 99 KFGARRVFFISGLISAL--LTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWA----------PPNERSTFI 166 (466)
T ss_pred HcCchHHHHHHHHHHHH--HHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeEC----------CHHHHHHHH
Confidence 88888888877765542 2223322 346688899999999999999999987776 467799999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhh
Q psy853 283 GFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 283 giF~~~~q~s~iiGnLIs~~il 304 (314)
++..+..|+|.+++..++.++-
T Consensus 167 ail~~g~q~g~v~~mp~sg~lc 188 (466)
T KOG2532|consen 167 AILTAGSQLGTIITMPVSGLLC 188 (466)
T ss_pred HHHHHHHHHHHHHHHHhHHHHh
Confidence 9999999999999998777654
No 127
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=95.14 E-value=0.67 Score=46.86 Aligned_cols=153 Identities=10% Similarity=0.111 Sum_probs=81.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhHHhh-hhcccCC-CChhh-HHHHHHHHHHHHhhhcccee-----eeccc--eee
Q psy853 146 KEKWRILKNIGSLSLAFMVQFTAFQGTANL-QSSINAK-EGLGT-VSLSAIYAALVLSCIFVPTF-----RLTVK--WTL 215 (314)
Q Consensus 146 ~~k~~~l~Nvi~lsi~F~l~ftAf~~~~~L-qSSin~~-~~lG~-~slailY~~~~is~~f~P~I-----~lG~K--~sL 215 (314)
...+.++|.+..+.++.+++|..-....-- .+.+... .+.+. .-..+++.+|.++=+++-.+ +...| |.+
T Consensus 262 ~~~~~v~kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~~p~~~~~~l~ 341 (437)
T TIGR00939 262 TSVWVVFTKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFMWPDEDSRWLP 341 (437)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHHhhhhheeEeeCCCccchH
Confidence 445667888888888766666543322111 1112111 12333 35556677777777765443 33444 544
Q ss_pred eehhh---hhHHHHhhcccc---------cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHH
Q psy853 216 CVSMM---CYLPYIGFQFYP---------RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFG 283 (314)
Q Consensus 216 vig~l---~Y~iyi~s~~yp---------~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~g 283 (314)
+++.+ .+++|++++..| +.|..++-.++.|+..|-+-+..=.|-- +..+.++++..|...+
T Consensus 342 i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p-------~~v~~~e~e~aG~~~~ 414 (437)
T TIGR00939 342 ILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYLGSLSMCLAP-------RQVDPHEREVAGALMV 414 (437)
T ss_pred HHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHHHHHHHHhcC-------CCCCHHHHHHHHHHHH
Confidence 43332 677888887653 4455566678888777755433322211 1112112233333333
Q ss_pred HHHHHHHhhHHHHHHHHHHhhhCCC
Q psy853 284 FFFLAWQTAELWGNLISSLETVLPD 308 (314)
Q Consensus 284 iF~~~~q~s~iiGnLIs~~il~~~~ 308 (314)
+ +..+|...|.++++++...-|
T Consensus 415 ~---~l~~Gl~~Gs~l~~~~~~~l~ 436 (437)
T TIGR00939 415 I---FLLVGLALGAVLSFLFVAILD 436 (437)
T ss_pred H---HHHHHHHHHHHHHHHHHHHcc
Confidence 3 346777888888887765443
No 128
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=95.11 E-value=0.14 Score=50.61 Aligned_cols=31 Identities=13% Similarity=-0.137 Sum_probs=21.5
Q ss_pred hhhhHHHHHHHHHHHHHhhHH-HHHHHHHHhh
Q psy853 274 VDAIIVRFFGFFFLAWQTAEL-WGNLISSLET 304 (314)
Q Consensus 274 ~~~~~gr~~giF~~~~q~s~i-iGnLIs~~il 304 (314)
.++.+++.+|++..+.+.+.. +|+++...+.
T Consensus 377 p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~ 408 (452)
T PRK11273 377 PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 408 (452)
T ss_pred ChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 356789999999887777654 4666655443
No 129
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=95.10 E-value=0.035 Score=54.04 Aligned_cols=108 Identities=14% Similarity=0.062 Sum_probs=72.3
Q ss_pred hhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhccc-ccceehhhhHHHhccCchhhhchhhhhHhh
Q psy853 185 LGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQ 261 (314)
Q Consensus 185 lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~ 261 (314)
.|.. .+..+..++++.+....+ |+|.|+.+..+.+.+..-...... ++++.++.+=++.|+|.+..+++. .++.+
T Consensus 28 ~g~~-~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~~~~~~-~~~~~ 105 (368)
T TIGR00903 28 LGLL-AITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPFLLNAF-APAAS 105 (368)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHHHHHHH-HHHHH
Confidence 3443 445555667777777766 999887765554444333222232 567788899999999998755333 33333
Q ss_pred hhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 262 VGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 262 ~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
.. .++.+++..+++.....++.++|.++...+.
T Consensus 106 ~~----------~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~ 138 (368)
T TIGR00903 106 QI----------REERRDLVISLLSFAMYLGIIFALAAGLKIY 138 (368)
T ss_pred Hc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 3567999999999999999998887776654
No 130
>PRK11462 putative transporter; Provisional
Probab=95.07 E-value=0.19 Score=50.31 Aligned_cols=107 Identities=7% Similarity=0.002 Sum_probs=60.9
Q ss_pred HHHhhhcccee--eeccceeeeehhhhhHH-HHhhcccccc--eehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcc
Q psy853 197 LVLSCIFVPTF--RLTVKWTLCVSMMCYLP-YIGFQFYPRF--YTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTD 271 (314)
Q Consensus 197 ~~is~~f~P~I--~lG~K~sLvig~l~Y~i-yi~s~~yp~~--y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~ 271 (314)
..++.++.|.+ |+|.|..++.+.+...+ .+...+.|.. +.+++..++.|++.+.....+-+.+.+... |.|.
T Consensus 276 ~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d-~~e~-- 352 (460)
T PRK11462 276 NLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVD-YGEW-- 352 (460)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhHH--
Confidence 34455667776 88888776644433222 2222233332 223445566677776666555555555542 3221
Q ss_pred cchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhC
Q psy853 272 QAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVL 306 (314)
Q Consensus 272 ~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~ 306 (314)
|..++.-|-+++.+.....+++.+|+.+...+|-.
T Consensus 353 ~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~ 387 (460)
T PRK11462 353 CNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY 387 (460)
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233445556777778889999999988887744
No 131
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=95.07 E-value=0.21 Score=49.63 Aligned_cols=142 Identities=9% Similarity=-0.045 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhcc-cCCCCh----hhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHH
Q psy853 154 NIGSLSLAFMVQFTAFQGTANLQSSI-NAKEGL----GTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYI 226 (314)
Q Consensus 154 Nvi~lsi~F~l~ftAf~~~~~LqSSi-n~~~~l----G~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi 226 (314)
+++.+.+..++.+.++.+........ .+.-|+ .....++.+....++.++.+.+ ++|.|..++++......-.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~ 338 (467)
T PRK09556 259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIF 338 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46677777777776666554433321 111111 1123344455566777777777 8998887665433222111
Q ss_pred --hhccc-ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHh-hHHHHHHHHHH
Q psy853 227 --GFQFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQT-AELWGNLISSL 302 (314)
Q Consensus 227 --~s~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~-s~iiGnLIs~~ 302 (314)
..... .+.+.++..-.+.|+...-.....+.+..+.. .++.+++..|+.-.+.++ +..++..+...
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~----------p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~ 408 (467)
T PRK09556 339 TLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFV----------PKKAIGVANGIKGTFAYLFGDSFAKVGLGM 408 (467)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhc----------chhhHHHHHHHHHHHHHHHhHHHHhhhHHH
Confidence 11111 22223334444455322111111122222222 356788888888777675 55666666665
Q ss_pred hhh
Q psy853 303 ETV 305 (314)
Q Consensus 303 il~ 305 (314)
+.-
T Consensus 409 i~~ 411 (467)
T PRK09556 409 IAD 411 (467)
T ss_pred Hhc
Confidence 544
No 132
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=95.00 E-value=0.022 Score=54.43 Aligned_cols=107 Identities=7% Similarity=-0.158 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc---c---cc-----ceehhhhHHHhccCchhhhc-
Q psy853 188 VSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF---Y---PR-----FYTLVPAGILVGIGAAPMWA- 253 (314)
Q Consensus 188 ~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~---y---p~-----~y~li~as~l~G~gagllW~- 253 (314)
...++......++.++.+.+ ++|.|+.++++.+..++...... + +. .+..+....+.+.+.+..|.
T Consensus 323 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (481)
T TIGR00879 323 LVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGP 402 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccC
Confidence 33444455566677777766 99999988877554443322221 1 10 12222223333333333332
Q ss_pred hhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 254 AKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 254 aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
....++.+.. .++.+++..|+.....+++.++|+++...+.
T Consensus 403 ~~~~~~~~~~----------p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~ 443 (481)
T TIGR00879 403 VPWVIVSEIF----------PLSLRPKGISIAVAANWLANFIVGFLFPTML 443 (481)
T ss_pred eehhhhhccC----------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333334443 3556888999999999999988887766554
No 133
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=94.94 E-value=0.19 Score=48.68 Aligned_cols=98 Identities=12% Similarity=-0.006 Sum_probs=57.2
Q ss_pred HHHHHhhhcccee--eeccceeee-ehhhhhHHHHhh-----ccc-ccceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853 195 AALVLSCIFVPTF--RLTVKWTLC-VSMMCYLPYIGF-----QFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAV 265 (314)
Q Consensus 195 ~~~~is~~f~P~I--~lG~K~sLv-ig~l~Y~iyi~s-----~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~ 265 (314)
....+++++...+ |+|.|+.+. ++.++..+.... ... ...+.+++..++.|++.+...+ ....+.+.
T Consensus 268 ~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~--- 343 (402)
T TIGR00897 268 FTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTL--- 343 (402)
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhh---
Confidence 3445555665555 899887653 232222221111 111 2344556777788877765432 22222222
Q ss_pred hhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 266 YAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 266 y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
.++.+++..|+.....+++..+|..+...+.
T Consensus 344 --------~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~ 374 (402)
T TIGR00897 344 --------APKHKGAAMSVLNLSAGLSAFLAPAIAVLFI 374 (402)
T ss_pred --------CcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1346899999999999999999998876554
No 134
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=94.93 E-value=0.51 Score=44.86 Aligned_cols=105 Identities=8% Similarity=-0.011 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhc-ccC------CCChhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHH
Q psy853 154 NIGSLSLAFMVQFTAFQGTANLQSS-INA------KEGLGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLP 224 (314)
Q Consensus 154 Nvi~lsi~F~l~ftAf~~~~~LqSS-in~------~~~lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~i 224 (314)
.++...+++++..++-.+..+.... +.+ .+.......+...+.++++.++...+ |+|.|+.+.++.+.-++
T Consensus 141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~ 220 (310)
T TIGR01272 141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVL 220 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 4454445555544455554443322 111 11223344666667778888888877 99998888777665554
Q ss_pred HHhhcccccceehhhhHHHhccCchhhhchhhhh
Q psy853 225 YIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATY 258 (314)
Q Consensus 225 yi~s~~yp~~y~li~as~l~G~gagllW~aqg~y 258 (314)
...............+-++.|++.+++|...-+.
T Consensus 221 ~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~ 254 (310)
T TIGR01272 221 LSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSL 254 (310)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433222222222345568899999999875444
No 135
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=94.84 E-value=0.045 Score=55.58 Aligned_cols=69 Identities=17% Similarity=0.299 Sum_probs=56.2
Q ss_pred ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhCCCCCCC
Q psy853 234 FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVLPDIPEP 312 (314)
Q Consensus 234 ~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~~~~~~~ 312 (314)
.|.+++.-++.|+|.+++.+.--.++++.+ .++.++...|+++...+.|..+|+.++...-..++..||
T Consensus 379 ~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~a----------P~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~ 447 (489)
T PRK10207 379 PWFIVLVYLFQSLGELFISALGLAMIAALV----------PQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDP 447 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhC----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 455778999999999999999888877776 467899999999999999999999888766444555444
No 136
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=94.81 E-value=0.019 Score=57.81 Aligned_cols=114 Identities=10% Similarity=0.017 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHhhhccce----e--eeccceeeeehhhhhHHHHhh------cc-----cccceehhhhHHHhccCchh
Q psy853 188 VSLSAIYAALVLSCIFVPT----F--RLTVKWTLCVSMMCYLPYIGF------QF-----YPRFYTLVPAGILVGIGAAP 250 (314)
Q Consensus 188 ~slailY~~~~is~~f~P~----I--~lG~K~sLvig~l~Y~iyi~s------~~-----yp~~y~li~as~l~G~gagl 250 (314)
.-..++|...+++.+++.. + +++.|+.++++.+.+++-... .+ .|..+.++...++.+++.++
T Consensus 288 ~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~ 367 (468)
T TIGR00788 288 SFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQL 367 (468)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHH
Confidence 3344444444444443332 2 799999999999888773322 22 15556778888999999999
Q ss_pred hhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhCCCCCC
Q psy853 251 MWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVLPDIPE 311 (314)
Q Consensus 251 lW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~~~~~~ 311 (314)
.+++.-.++.+.+ .++..+..++++.++.+++..+|+.++..+....+++.
T Consensus 368 ~~~~~~~~~~~~~----------p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~ 418 (468)
T TIGR00788 368 KFMPFLVLLARLC----------PSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITC 418 (468)
T ss_pred HHccHHHHHHHhC----------CCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 9999999988887 46778899999999999999999999988887776553
No 137
>PRK03633 putative MFS family transporter protein; Provisional
Probab=94.78 E-value=0.2 Score=47.99 Aligned_cols=100 Identities=12% Similarity=0.151 Sum_probs=61.6
Q ss_pred HHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhh
Q psy853 192 AIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKL 269 (314)
Q Consensus 192 ilY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~ 269 (314)
+......++.++.+.+ ++|.|+.+.++.+.+.+..+..+ +. +..+.+.++.|++...+++..-+++.+..
T Consensus 243 ~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~------ 314 (381)
T PRK03633 243 LLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-SQ-AAMAPALFILGAAGFTLYPVAMAWACEKV------ 314 (381)
T ss_pred HHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-hh-HHHHHHHHHHHHHHHhHHHHHHHHHHccC------
Confidence 3334445555666656 99999988887777666444333 21 22344566677766655555444444332
Q ss_pred cccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 270 TDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 270 ~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
.++..+...+.+...++++..+|..++..+
T Consensus 315 ----~~~~~~~~~~~~~~~~~lG~~igp~~~G~l 344 (381)
T PRK03633 315 ----EHHELVAMNQALLLSYTVGSLLGPSFTAML 344 (381)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234455667777778889999999887765
No 138
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=94.61 E-value=0.051 Score=54.91 Aligned_cols=143 Identities=20% Similarity=0.237 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhhhhcccC-CCChhhHHH----HHHHHHHHHhhhcccee--eeccceeeeehhhhhHH
Q psy853 152 LKNIGSLSLAFMVQFTAFQGTANLQSSINA-KEGLGTVSL----SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLP 224 (314)
Q Consensus 152 l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~-~~~lG~~sl----ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~i 224 (314)
.+|+.+-=++-|+.--.-++...+...... .-|++..-+ .++-.+-+++|++.|.+ |+|.|.++.++.+.|.+
T Consensus 251 ~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~ 330 (438)
T COG2270 251 RKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSI 330 (438)
T ss_pred ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHH
Confidence 347777666767666667777776655432 223333322 22334567788888988 99999888888776644
Q ss_pred HHhhcc-cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 225 YIGFQF-YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 225 yi~s~~-yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
-..-.+ -....-....+.+.|+..|+.|+..-+|+.+.. .++.-++|+|++-..-..+.+.|......+
T Consensus 331 ~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lv----------p~~k~~~fFglyaltgra~S~~gp~lv~v~ 400 (438)
T COG2270 331 AALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLV----------PKGKEGRFFGLYALTGRAASFLGPFLVAVI 400 (438)
T ss_pred HHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhC----------CCccccceeehhhhhhhHHHHHHHHHHHHH
Confidence 333222 222344567889999999999999999999987 345567899999888888888888766554
Q ss_pred h
Q psy853 304 T 304 (314)
Q Consensus 304 l 304 (314)
.
T Consensus 401 t 401 (438)
T COG2270 401 T 401 (438)
T ss_pred H
Confidence 4
No 139
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=94.55 E-value=0.23 Score=49.84 Aligned_cols=86 Identities=6% Similarity=-0.082 Sum_probs=45.8
Q ss_pred HHHHHhhhcccee--eeccceeeeehhhhhHHHHhh---ccc-ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhh
Q psy853 195 AALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF---QFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAK 268 (314)
Q Consensus 195 ~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s---~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~ 268 (314)
....+++++.+.+ ++|.|+.++++.+...+.... ... .....++.+-++.|++.+..+.....++.++.
T Consensus 297 ~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~----- 371 (490)
T PRK10642 297 IGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMF----- 371 (490)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
Confidence 3344445555555 999999988877643321111 111 12233455556667666666655556655443
Q ss_pred hcccchhhhHHHHHHHHHHHHH
Q psy853 269 LTDQAVDAIIVRFFGFFFLAWQ 290 (314)
Q Consensus 269 ~~~~~~~~~~gr~~giF~~~~q 290 (314)
..+.+++..|+.+.+..
T Consensus 372 -----p~~~Rg~~~g~~~~~~~ 388 (490)
T PRK10642 372 -----PTHIRYSALAAAFNISV 388 (490)
T ss_pred -----CCccchHHHHHHHHHHH
Confidence 24456665565444333
No 140
>PRK11010 ampG muropeptide transporter; Validated
Probab=94.39 E-value=0.23 Score=50.20 Aligned_cols=95 Identities=14% Similarity=0.026 Sum_probs=65.9
Q ss_pred Hhhh-cccee-ee-----cccee-eeehhhhhHHHH--hhcccc--cceehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853 199 LSCI-FVPTF-RL-----TVKWT-LCVSMMCYLPYI--GFQFYP--RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY 266 (314)
Q Consensus 199 is~~-f~P~I-~l-----G~K~s-Lvig~l~Y~iyi--~s~~yp--~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y 266 (314)
++.+ ++|.. ++ |.|.. +.++.++..+.. .++.-| +.+.+++..++.|++.+...++..++.++..
T Consensus 60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~--- 136 (491)
T PRK11010 60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVL--- 136 (491)
T ss_pred HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 3444 55656 77 88875 667777665443 334333 4456677888889989888888888887775
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
.++.+++..++....+.++.++|+.+...+
T Consensus 137 -------~~~~rg~~~~i~~~g~~lG~llg~~l~~~l 166 (491)
T PRK11010 137 -------PAEERGAGAAISVLGYRLAMLVSGGLALWL 166 (491)
T ss_pred -------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355688888888888888888887665544
No 141
>PRK09528 lacY galactoside permease; Reviewed
Probab=94.38 E-value=0.08 Score=51.49 Aligned_cols=71 Identities=20% Similarity=0.165 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhc-ccCCCChhhHHHHHHHHHHHHhh----hcccee--eeccceeeeehhhhhHH
Q psy853 154 NIGSLSLAFMVQFTAFQGTANLQSS-INAKEGLGTVSLSAIYAALVLSC----IFVPTF--RLTVKWTLCVSMMCYLP 224 (314)
Q Consensus 154 Nvi~lsi~F~l~ftAf~~~~~LqSS-in~~~~lG~~slailY~~~~is~----~f~P~I--~lG~K~sLvig~l~Y~i 224 (314)
++..+.+.+++.+.++.....+..- +.++-|+.....+++...+.++. .+...+ ++|.|+.++++..+.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 88 (420)
T PRK09528 11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLV 88 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 5566666666666665443333322 11112333343444444444444 444444 99999999886665543
No 142
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=94.36 E-value=0.088 Score=54.07 Aligned_cols=98 Identities=8% Similarity=-0.002 Sum_probs=56.8
Q ss_pred HHhhhcccee--ee-ccceeeeehhhhhHHHHhhccccc--ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhccc
Q psy853 198 VLSCIFVPTF--RL-TVKWTLCVSMMCYLPYIGFQFYPR--FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQ 272 (314)
Q Consensus 198 ~is~~f~P~I--~l-G~K~sLvig~l~Y~iyi~s~~yp~--~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~ 272 (314)
.++.++...+ ++ |.|+++++|.+...+-......+. ...++.+-++.++|.|.+.+...+++.+. |++
T Consensus 59 ~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~el---fp~---- 131 (493)
T PRK15462 59 YVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGEL---YEP---- 131 (493)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHH---CCC----
Confidence 3344444555 66 999999999887665432221211 12234444555677777777666666554 321
Q ss_pred chhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 273 AVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 273 ~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
+|+.|.+.+++++...+++..+|.++...+
T Consensus 132 -~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L 161 (493)
T PRK15462 132 -TDPRRDGGFSLMYAAGNVGSIIAPIACGYA 161 (493)
T ss_pred -CCccccceehHHHHHHHHHHHHHHHHHHHH
Confidence 223455667777777777777666665543
No 143
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=93.98 E-value=0.36 Score=46.48 Aligned_cols=97 Identities=10% Similarity=-0.037 Sum_probs=62.1
Q ss_pred HHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-----ccc-cceehhhhHHHhccCchhhhchhhhhHhhhhhhhh
Q psy853 196 ALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-----FYP-RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYA 267 (314)
Q Consensus 196 ~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-----~yp-~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~ 267 (314)
...++.++.+.+ +++.|+.+.++.+...+-.... ..+ .++.++.+.++.|+|.+..++....+....
T Consensus 263 ~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~----- 337 (406)
T PRK15402 263 ALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS----- 337 (406)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-----
Confidence 344555555655 8899888887765443222211 111 233456778888998888876554433221
Q ss_pred hhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 268 KLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 268 ~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
.++.+++..++.......++.+|..+...+
T Consensus 338 ------~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l 367 (406)
T PRK15402 338 ------SDVSKGTVSAAMGMLSMLIFTVGIELSKHA 367 (406)
T ss_pred ------ccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 246788999999888889988888777654
No 144
>KOG1479|consensus
Probab=93.96 E-value=0.3 Score=49.22 Aligned_cols=148 Identities=14% Similarity=0.172 Sum_probs=83.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhHHh-hhhcccCCCCh-hhHHHHHHHHHHHHhhhccce----e-eeccceeeeehh
Q psy853 147 EKWRILKNIGSLSLAFMVQFTAFQGTAN-LQSSINAKEGL-GTVSLSAIYAALVLSCIFVPT----F-RLTVKWTLCVSM 219 (314)
Q Consensus 147 ~k~~~l~Nvi~lsi~F~l~ftAf~~~~~-LqSSin~~~~l-G~~slailY~~~~is~~f~P~----I-~lG~K~sLvig~ 219 (314)
.||..+++.....++.++.|.-..+..- +.+-....+.. ..+..-+....+-++-+++-+ . .-++|+..+...
T Consensus 240 ~~~~i~~k~~~~~~~i~lvy~VTLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~ 319 (406)
T KOG1479|consen 240 SLWDIFKKIKDLAFNIFLVYFVTLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVL 319 (406)
T ss_pred hHHHHHHHHHHHhhchheeeeeeeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCCCceehHHHH
Confidence 7888888888888776666654332211 11112212222 345555555546666666522 2 444566655554
Q ss_pred h---hhHHHHhhcc------cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchh-hhHHHHHHHHHHHH
Q psy853 220 M---CYLPYIGFQF------YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVD-AIIVRFFGFFFLAW 289 (314)
Q Consensus 220 l---~Y~iyi~s~~------yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~-~~~gr~~giF~~~~ 289 (314)
+ .++.|.++++ +.+.+..+.-..+.|+.-| |++.+.--|+.+..++++ +..|-...+| .
T Consensus 320 lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnG--------Yltsl~m~~aPk~v~~~e~e~aG~~m~~f---l 388 (406)
T KOG1479|consen 320 LRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNG--------YLTSLIMMYAPKQVKPSEKEAAGNLMVFF---L 388 (406)
T ss_pred HHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccc--------hHhhheehhcCCCCChHHHHHHHHHHHHH---H
Confidence 3 6677888887 3334444555666666544 666666555555443333 3444444444 4
Q ss_pred HhhHHHHHHHHHHhhh
Q psy853 290 QTAELWGNLISSLETV 305 (314)
Q Consensus 290 q~s~iiGnLIs~~il~ 305 (314)
..|...|.++++..+.
T Consensus 389 ~~Gl~~G~~~s~l~~~ 404 (406)
T KOG1479|consen 389 VGGLALGSLLSWVFVI 404 (406)
T ss_pred HHHHHHhhHHHHHHHH
Confidence 7788889999887654
No 145
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=93.93 E-value=0.49 Score=45.39 Aligned_cols=98 Identities=12% Similarity=-0.060 Sum_probs=56.6
Q ss_pred HHhhhcccee--eeccceeeeehhhhhHH-HHh----hcc--cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhh
Q psy853 198 VLSCIFVPTF--RLTVKWTLCVSMMCYLP-YIG----FQF--YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAK 268 (314)
Q Consensus 198 ~is~~f~P~I--~lG~K~sLvig~l~Y~i-yi~----s~~--yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~ 268 (314)
.++.++.+.+ |+|.|..++++.+.... ... ... .+..+.++...++.|++.+...++.-.++.+...
T Consensus 258 ~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---- 333 (390)
T TIGR02718 258 LLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAG---- 333 (390)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence 3445566655 99999888876654311 111 111 1122222333344445555554444444443321
Q ss_pred hcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 269 LTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 269 ~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
+++..++.++...++.+++.++|+.++..+.
T Consensus 334 -----~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~ 364 (390)
T TIGR02718 334 -----DGDQAGTDVTAVQSTRDLGELIASSIAGYLT 364 (390)
T ss_pred -----cccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2367788899999999999999999887664
No 146
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=93.91 E-value=0.64 Score=46.88 Aligned_cols=61 Identities=15% Similarity=0.321 Sum_probs=52.6
Q ss_pred cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 233 RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 233 ~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
+.|.+++.-++.|+|..+..+..-+++++.+ .++.+|++.|+++.....+..+|+.++...
T Consensus 380 s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~a----------P~~~~g~~~g~~~l~~~~g~~l~~~~~~~~ 440 (475)
T TIGR00924 380 SPWFMVLIYLFQTLGELMISPLGLSWWTKIA----------PQRLMGQMLGMWFLAQAMGSLLGGYLATFG 440 (475)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566889999999999999999999988887 578899999999999999888888777643
No 147
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=93.84 E-value=0.16 Score=50.96 Aligned_cols=137 Identities=20% Similarity=0.220 Sum_probs=84.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCC--hhhHHH-HHHHHH-HHHhhhcccee--eeccceeeeehhhh
Q psy853 148 KWRILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEG--LGTVSL-SAIYAA-LVLSCIFVPTF--RLTVKWTLCVSMMC 221 (314)
Q Consensus 148 k~~~l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~--lG~~sl-ailY~~-~~is~~f~P~I--~lG~K~sLvig~l~ 221 (314)
+.+...-++.+.++-|..=+.-.-...+-..+.++=+ .+...+ ...|+. .++++.+...+ ++..|..|....
T Consensus 8 ~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l-- 85 (394)
T COG2814 8 RKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLL-- 85 (394)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH--
Confidence 3345677888888766554444433344333322111 222222 223333 34444433333 899999888754
Q ss_pred hHHHHhhc----ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHH
Q psy853 222 YLPYIGFQ----FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGN 297 (314)
Q Consensus 222 Y~iyi~s~----~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGn 297 (314)
.+|+.+| +-|+++.++.+=++.|++.|.+|.-...+..+.. .++.++|..++-..-...+.++|-
T Consensus 86 -~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lv----------pp~~~~~Aiaiv~~G~tlA~v~Gv 154 (394)
T COG2814 86 -ALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLV----------PPGKRGRALALVFTGLTLATVLGV 154 (394)
T ss_pred -HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CccchhhHHHHHHHHHHHHHHHhc
Confidence 5566555 4688999999999999999999999999888876 345566666665555555555543
No 148
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=93.80 E-value=0.053 Score=53.17 Aligned_cols=103 Identities=9% Similarity=-0.051 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc--c-cccc--eehhhhHHHhccCchhhhch-hhhhH
Q psy853 188 VSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ--F-YPRF--YTLVPAGILVGIGAAPMWAA-KATYL 259 (314)
Q Consensus 188 ~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~--~-yp~~--y~li~as~l~G~gagllW~a-qg~yl 259 (314)
...........+++++...+ ++|.|+.++++.++.++-.... . +... ...+.+-++.+++.+..|.. ...++
T Consensus 310 ~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (479)
T PRK10077 310 LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLL 389 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHh
Confidence 34444555566777777766 9999999988887655533221 1 1111 11222333334444444432 23444
Q ss_pred hhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy853 260 TQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLIS 300 (314)
Q Consensus 260 t~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs 300 (314)
.+.. ..+.+++..|+..++..++.++|..+.
T Consensus 390 ~e~~----------p~~~r~~~~g~~~~~~~~g~~~~~~~~ 420 (479)
T PRK10077 390 SEIF----------PNAIRGKALAIAVAAQWIANYFVSWTF 420 (479)
T ss_pred HhhC----------ChhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4443 246688888888888888887775443
No 149
>KOG1330|consensus
Probab=93.75 E-value=0.075 Score=54.35 Aligned_cols=139 Identities=17% Similarity=0.243 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhhhhcccCC-----CChhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHH
Q psy853 152 LKNIGSLSLAFMVQFTAFQGTANLQSSINAK-----EGLGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLP 224 (314)
Q Consensus 152 l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~-----~~lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~i 224 (314)
.+.++++.+.-++.+.==.++.++...+... ...|..+...+ .++++++-+.... +.-+|+.|.+|.....+
T Consensus 32 ~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~-v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~ 110 (493)
T KOG1330|consen 32 TLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFI-VVFMIASPLFGYLADRYNRKRVIAVGIFIWTL 110 (493)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHH-HHHHHHHHHHHHHHhhcCcceEEeeHHHHHHH
Confidence 4566777777777777666655554443222 23444443222 2233333333333 88899999999987765
Q ss_pred HHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy853 225 YIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISS 301 (314)
Q Consensus 225 yi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~ 301 (314)
=+.+ -+-..+|.+.+.=.+.|+|.+..-......+.... +++.|++-+++|+..--.|..+|-+++.
T Consensus 111 Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f----------~~~~Rs~~~~ify~~ipvGsglG~vvgs 178 (493)
T KOG1330|consen 111 AVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSF----------PDDKRSRVLGIFYFAIPVGSGLGYVVGS 178 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcC----------cchhhhHHHHHhhhhcccccceeEEeee
Confidence 5433 33355778889999999999999998888888876 5788999999998877777666655443
No 150
>KOG3764|consensus
Probab=93.74 E-value=0.041 Score=55.51 Aligned_cols=104 Identities=19% Similarity=0.241 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHHHhhhcccee------eeccceeeeehhhhh----HHHHhhcccccceehhhhHHHhccCchhhhchh
Q psy853 186 GTVSLSAIYAALVLSCIFVPTF------RLTVKWTLCVSMMCY----LPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAK 255 (314)
Q Consensus 186 G~~slailY~~~~is~~f~P~I------~lG~K~sLvig~l~Y----~iyi~s~~yp~~y~li~as~l~G~gagllW~aq 255 (314)
-+....+++++.++..+++.++ ++|.|.-|++|.+.- ++|..++.|| .++++=++.|+|.+..|++-
T Consensus 104 e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~---~l~vAR~LQgvgsA~~~tsg 180 (464)
T KOG3764|consen 104 ENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYP---MLFVARSLQGVGSAFADTSG 180 (464)
T ss_pred cccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhH---HHHHHHHHhhhhHHHHHhhh
Confidence 3567778888888887755433 999999999987643 3444444454 67899999999999999998
Q ss_pred hhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy853 256 ATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISS 301 (314)
Q Consensus 256 g~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~ 301 (314)
-+.+.+ +|+ +|+.|++..|+-.++..+|.++|.-+..
T Consensus 181 lamlAd---~f~------~d~er~~vmGialgfislG~lvgPpfGG 217 (464)
T KOG3764|consen 181 LAMLAD---VFP------EDNERGSVMGIALGFISLGVLVGPPFGG 217 (464)
T ss_pred HHHHHH---Hcc------cchhhhHHHHHHHHHHhccceecCCccc
Confidence 777643 343 5677899999999999999888765443
No 151
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=93.64 E-value=0.33 Score=45.45 Aligned_cols=87 Identities=11% Similarity=0.030 Sum_probs=47.1
Q ss_pred eeccceeeee-hhhhhHHH-HhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHH
Q psy853 208 RLTVKWTLCV-SMMCYLPY-IGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFF 285 (314)
Q Consensus 208 ~lG~K~sLvi-g~l~Y~iy-i~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF 285 (314)
++|.|+.+++ +.+...+. .+..+-++++.++....+.|.+.+..++....+..+... ++++.+..+.++.
T Consensus 59 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~--------~~~~~~~~~~~~~ 130 (375)
T TIGR00899 59 YQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHAD--------RTGREAVMFSSVM 130 (375)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhh--------hcchhhHHHHHHH
Confidence 8999887655 44443333 333344566666677777777766666554444433321 0111222335555
Q ss_pred HHHHHhhHHHHHHHHHH
Q psy853 286 FLAWQTAELWGNLISSL 302 (314)
Q Consensus 286 ~~~~q~s~iiGnLIs~~ 302 (314)
......+.++|..+...
T Consensus 131 ~~~~~~g~~ig~~~~~~ 147 (375)
T TIGR00899 131 RAQISLAWVIGPPLAFW 147 (375)
T ss_pred HHHHhHHHHHhhhHHHH
Confidence 55556666666655543
No 152
>KOG0252|consensus
Probab=93.61 E-value=0.046 Score=56.06 Aligned_cols=152 Identities=17% Similarity=0.207 Sum_probs=100.1
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHHh-HHhhhhcc----c--C---CCChhhHHHHHHHHHHHHhhhcccee----
Q psy853 142 KMSTKEKWRILKNIGSLSLAFMVQFTAFQG-TANLQSSI----N--A---KEGLGTVSLSAIYAALVLSCIFVPTF---- 207 (314)
Q Consensus 142 ~~~~~~k~~~l~Nvi~lsi~F~l~ftAf~~-~~~LqSSi----n--~---~~~lG~~slailY~~~~is~~f~P~I---- 207 (314)
+.....+||.++++++-|++||. =+|+- ..++.+.+ + . .+++-.-..+..+++-.+++++.-.+
T Consensus 30 ~~~~g~qw~~fk~i~iAG~Gfft--DsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~l 107 (538)
T KOG0252|consen 30 RTSEGLQWKHFKAIIIAGMGFFT--DSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWL 107 (538)
T ss_pred ccccchhHHHHHHHHHhhhhhcc--cchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556678899999999999985 23321 12222221 1 1 12344556677777777777666544
Q ss_pred --eeccceeeeehhhhhHHHH-hhccc---cc----ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhh
Q psy853 208 --RLTVKWTLCVSMMCYLPYI-GFQFY---PR----FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAI 277 (314)
Q Consensus 208 --~lG~K~sLvig~l~Y~iyi-~s~~y---p~----~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~ 277 (314)
++|.|...-...+.-.+-. ++.+. +. .+.+..-=.++|+|.|-=++.-.++.++.| .+.+
T Consensus 108 gD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~a----------n~~~ 177 (538)
T KOG0252|consen 108 GDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESA----------NKKT 177 (538)
T ss_pred HhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhh----------hhcc
Confidence 8999987655554333333 12221 11 244556668899999988888888877777 4678
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853 278 IVRFFGFFFLAWQTAELWGNLISSLETV 305 (314)
Q Consensus 278 ~gr~~giF~~~~q~s~iiGnLIs~~il~ 305 (314)
+|.+.+..+++.-.+...|++++.+++.
T Consensus 178 RGa~iaavFa~Qg~GilaG~ivt~Iv~~ 205 (538)
T KOG0252|consen 178 RGAFIAAVFAMQGFGILAGGIVALIVSA 205 (538)
T ss_pred ccceeEEEEEecchhHhhccHHHHHHHH
Confidence 8999999999999999999988876653
No 153
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=93.41 E-value=0.26 Score=50.10 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=53.7
Q ss_pred ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhCCCCCC
Q psy853 234 FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVLPDIPE 311 (314)
Q Consensus 234 ~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~~~~~~ 311 (314)
.+.++++.++.|+|+.++.+.--.++++.+ .++.+|+..|+|+....++..+|+.+....-+.+++.+
T Consensus 382 ~~~~~~~~~l~~~ge~~~~p~g~s~~~~~a----------P~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~ 449 (500)
T PRK09584 382 VNWLIASYGLQSIGELMISGLGLAMVAQLV----------PQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTD 449 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhC----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 346789999999999999999999988887 57899999998887777788777777764443344433
No 154
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=93.35 E-value=0.086 Score=50.75 Aligned_cols=107 Identities=17% Similarity=0.222 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhc-ccCCCChhhHHHHHHHHHHHHhhh----cccee--eeccceeeeehhhhhHHHH
Q psy853 154 NIGSLSLAFMVQFTAFQGTANLQSS-INAKEGLGTVSLSAIYAALVLSCI----FVPTF--RLTVKWTLCVSMMCYLPYI 226 (314)
Q Consensus 154 Nvi~lsi~F~l~ftAf~~~~~LqSS-in~~~~lG~~slailY~~~~is~~----f~P~I--~lG~K~sLvig~l~Y~iyi 226 (314)
+++.+....++.+.++....-+... +.++-++.....++++..+.+... +...+ ++|.|+.++++.+++++-.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~ 82 (396)
T TIGR00882 3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLF 82 (396)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 4556665556666555444433222 111112223334444455444444 33333 9999999988766554322
Q ss_pred hhcc----cc-----cceehhhhHHHhccCchhhhchhhhhHh
Q psy853 227 GFQF----YP-----RFYTLVPAGILVGIGAAPMWAAKATYLT 260 (314)
Q Consensus 227 ~s~~----yp-----~~y~li~as~l~G~gagllW~aqg~ylt 260 (314)
...+ .+ ..+..+.+.++.|++.+....+...+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 125 (396)
T TIGR00882 83 APFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIE 125 (396)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Confidence 2111 11 1122344556666666555555554443
No 155
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=93.25 E-value=0.3 Score=48.30 Aligned_cols=94 Identities=14% Similarity=0.115 Sum_probs=68.7
Q ss_pred HhHHhhhhc----ccCCCChhhHHHHHHHHHHHHhhhc-ccee-----eeccceeeeehhhhhHHHHhhcccccceehhh
Q psy853 170 QGTANLQSS----INAKEGLGTVSLSAIYAALVLSCIF-VPTF-----RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVP 239 (314)
Q Consensus 170 ~~~~~LqSS----in~~~~lG~~slailY~~~~is~~f-~P~I-----~lG~K~sLvig~l~Y~iyi~s~~yp~~y~li~ 239 (314)
...--+|.. ++++.+...-..+.+|....+++.+ +|.+ ++|.|...++-.+.|.+=-.....++.+.++.
T Consensus 47 ~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~ 126 (354)
T PF05631_consen 47 MAADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLL 126 (354)
T ss_pred HHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 333445544 2333455555677788776666643 3333 99999999998888888777888999999999
Q ss_pred hHHHhccCchhhhchh-hhhHhhhh
Q psy853 240 AGILVGIGAAPMWAAK-ATYLTQVG 263 (314)
Q Consensus 240 as~l~G~gagllW~aq-g~ylt~~s 263 (314)
+-++.|++.++|+.+- .=+++++-
T Consensus 127 GRvlgGiaTSLLfS~FEsW~V~Eh~ 151 (354)
T PF05631_consen 127 GRVLGGIATSLLFSAFESWMVHEHN 151 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999984 44666663
No 156
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=93.19 E-value=0.56 Score=45.61 Aligned_cols=97 Identities=14% Similarity=0.003 Sum_probs=60.8
Q ss_pred HHHhhhcccee--eeccceeeeehhhhhHHHHhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccch
Q psy853 197 LVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAV 274 (314)
Q Consensus 197 ~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~ 274 (314)
..+++++++.+ +.+.|..+.++.+.-..+.+..+.+..|..+...++.|++.+...+..-+.+.+.+ +
T Consensus 254 ~i~g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~----------~ 323 (393)
T PRK11195 254 IAVGAGAAARLVTLETVLRVLPAGILMGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRG----------H 323 (393)
T ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhC----------c
Confidence 44455555555 67777766666433222222122334555566777889988887766555443322 2
Q ss_pred hhh-HHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 275 DAI-IVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 275 ~~~-~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
++. +|+.+++.....+.+..+|-.+...+
T Consensus 324 ~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~ 353 (393)
T PRK11195 324 VLVGAGHSIAVQNFNENLAMLLMLGLYSLL 353 (393)
T ss_pred ccccchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333 68999999999999999998887754
No 157
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=93.15 E-value=0.44 Score=46.46 Aligned_cols=88 Identities=14% Similarity=0.046 Sum_probs=55.6
Q ss_pred eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHH
Q psy853 208 RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFF 286 (314)
Q Consensus 208 ~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~ 286 (314)
+++.+..++++.+.+.+-.... +.++.+.++...++.|++.+...+...+++.+.. .++.+++..|+..
T Consensus 270 r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~----------p~~~~g~~~g~~~ 339 (400)
T PRK11646 270 RFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLA----------DARARGSYMGFSR 339 (400)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcC----------CcccchhhhhHHH
Confidence 4555555555554443322221 2344444555666777777666655555555554 3678899999999
Q ss_pred HHHHhhHHHHHHHHHHhhh
Q psy853 287 LAWQTAELWGNLISSLETV 305 (314)
Q Consensus 287 ~~~q~s~iiGnLIs~~il~ 305 (314)
..+..+..+|..+...+.-
T Consensus 340 ~~~~~g~~ig~~l~G~l~~ 358 (400)
T PRK11646 340 LGLALGGAIGYIGGGWLFD 358 (400)
T ss_pred HHHHHHHHhcccchHHHHH
Confidence 9999999999888776643
No 158
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=93.13 E-value=0.39 Score=46.03 Aligned_cols=60 Identities=12% Similarity=-0.003 Sum_probs=44.7
Q ss_pred ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 234 FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 234 ~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
.+.++.+.++.|+|.+.+.+..-++..+.. ++..+...+++.....++..+|+.+...+.
T Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 299 VWTLLVPAALFFFGAGMLFPLATSGAMEPF-----------PYLAGTAGALLGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------cccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 355667778889999988888777765543 234677788888888899988888766543
No 159
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=93.02 E-value=0.78 Score=43.01 Aligned_cols=96 Identities=14% Similarity=0.143 Sum_probs=53.6
Q ss_pred HHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc----c--ccceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853 194 YAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF----Y--PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAV 265 (314)
Q Consensus 194 Y~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~----y--p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~ 265 (314)
.....++.++.+.+ ++|.|+.+.++.+...+-..... . +..+.++...++.|++.+..+...-.+..+..
T Consensus 252 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-- 329 (385)
T TIGR00710 252 IIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDF-- 329 (385)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--
Confidence 33445555666665 89999888777554443222221 1 22334455667788888877765555443321
Q ss_pred hhhhcccchhhhHHHHHHHHHHHHHh-hHHHHHHHH
Q psy853 266 YAKLTDQAVDAIIVRFFGFFFLAWQT-AELWGNLIS 300 (314)
Q Consensus 266 y~~~~~~~~~~~~gr~~giF~~~~q~-s~iiGnLIs 300 (314)
++.+++..+++..+... +.+.|.+++
T Consensus 330 ---------~~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 330 ---------PHVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred ---------cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 24567777777655543 444444443
No 160
>KOG0569|consensus
Probab=92.96 E-value=0.099 Score=53.74 Aligned_cols=99 Identities=16% Similarity=0.145 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHhhhcccee--eeccceeeeehhhhh----HHHHhhcccccceehhhhHHHhccCchhhhchhhhhHhh
Q psy853 188 VSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCY----LPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQ 261 (314)
Q Consensus 188 ~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y----~iyi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~ 261 (314)
...++.+.-.++++++++.+ ++|.|.++.++.+.- .+...+...+....++.+-.+.|+..++.=..+.-|+++
T Consensus 64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E 143 (485)
T KOG0569|consen 64 LIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTE 143 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 34555556677777888888 999999888876633 344455667777888999999999999999999999999
Q ss_pred hhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHH
Q psy853 262 VGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWG 296 (314)
Q Consensus 262 ~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiG 296 (314)
+| .++.||.....--....++.++|
T Consensus 144 ~s----------P~~~RG~~g~~~~~~~~~g~ll~ 168 (485)
T KOG0569|consen 144 IS----------PKNLRGALGTLLQIGVVIGILLG 168 (485)
T ss_pred cC----------hhhhccHHHHHHHHHHHHHHHHH
Confidence 98 46666665444333333333333
No 161
>PRK09952 shikimate transporter; Provisional
Probab=92.89 E-value=0.64 Score=45.88 Aligned_cols=66 Identities=11% Similarity=0.023 Sum_probs=37.1
Q ss_pred HHhhhcccee--eeccceeeeehhhhhHHHHhhcc----ccc-ceehhhhHHHhccCchhhhchhhhhHhhhh
Q psy853 198 VLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF----YPR-FYTLVPAGILVGIGAAPMWAAKATYLTQVG 263 (314)
Q Consensus 198 ~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~----yp~-~y~li~as~l~G~gagllW~aqg~ylt~~s 263 (314)
.++..+.+.+ |+|.|+.++++.+.-.+.....+ ... .+.++....+.|++.+..+.....++++..
T Consensus 300 ~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~ 372 (438)
T PRK09952 300 CLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMF 372 (438)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3444455555 99999888776543322211111 112 223344455667777777777777776654
No 162
>KOG0255|consensus
Probab=92.79 E-value=0.18 Score=50.78 Aligned_cols=80 Identities=14% Similarity=0.240 Sum_probs=68.3
Q ss_pred ChhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHh
Q psy853 184 GLGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLT 260 (314)
Q Consensus 184 ~lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt 260 (314)
..-..+.++.+.-..+++++...+ ++|+|.+++++.+.+.++-.. -+-++++.+++.=.+.|++.+..++....+++
T Consensus 118 ~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~ 197 (521)
T KOG0255|consen 118 TLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVA 197 (521)
T ss_pred hHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhhe
Confidence 455667778888888888877777 999999999999999988755 55678888899999999999999999999998
Q ss_pred hhh
Q psy853 261 QVG 263 (314)
Q Consensus 261 ~~s 263 (314)
+.-
T Consensus 198 E~~ 200 (521)
T KOG0255|consen 198 EIV 200 (521)
T ss_pred eec
Confidence 775
No 163
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=92.33 E-value=0.33 Score=48.75 Aligned_cols=29 Identities=7% Similarity=-0.092 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 275 DAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 275 ~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
.+.|++..|+...+..++.++|+.+...+
T Consensus 423 ~~~R~~~~g~~~~~~~~~~~~~~~~~~~l 451 (502)
T TIGR00887 423 TRYRSTAHGISAASGKAGAIIGQFGFLYL 451 (502)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHhhhh
Confidence 56677888888777777777776555433
No 164
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=92.12 E-value=0.81 Score=42.77 Aligned_cols=81 Identities=12% Similarity=-0.082 Sum_probs=45.9
Q ss_pred HHHHhhhcccee--eeccceeeeehhhhhHHHHhhc--ccc---cce----ehhhhHHHhccCchhhhchhhhhHhhhhh
Q psy853 196 ALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ--FYP---RFY----TLVPAGILVGIGAAPMWAAKATYLTQVGA 264 (314)
Q Consensus 196 ~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~--~yp---~~y----~li~as~l~G~gagllW~aqg~ylt~~s~ 264 (314)
...++.++.+.+ |+|.|..+..+....+.-.... .+. ..+ .++...+..|++.+..|.....+ .
T Consensus 273 ~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~- 347 (366)
T TIGR00886 273 LGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHI----F- 347 (366)
T ss_pred HHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhh----c-
Confidence 345556666666 9999876665554333322221 122 222 23566778888888888654332 2
Q ss_pred hhhhhcccchhhhHHHHHHHHHHHHHh
Q psy853 265 VYAKLTDQAVDAIIVRFFGFFFLAWQT 291 (314)
Q Consensus 265 ~y~~~~~~~~~~~~gr~~giF~~~~q~ 291 (314)
++..++..|++..+.+.
T Consensus 348 ----------~~~~g~~~g~~~~~~~~ 364 (366)
T TIGR00886 348 ----------RRATGAVSGLVGAIGNL 364 (366)
T ss_pred ----------hhhcccHHHHHHHhccC
Confidence 23567777777655443
No 165
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=91.86 E-value=0.28 Score=47.20 Aligned_cols=104 Identities=14% Similarity=0.034 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhcccCCCChhhHHHHHH----HHHHHHhhh-cccee-eecc----ceeeeehhhhhHH
Q psy853 155 IGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAI----YAALVLSCI-FVPTF-RLTV----KWTLCVSMMCYLP 224 (314)
Q Consensus 155 vi~lsi~F~l~ftAf~~~~~LqSSin~~~~lG~~slail----Y~~~~is~~-f~P~I-~lG~----K~sLvig~l~Y~i 224 (314)
...+++.+++.|.++....-+....-++-+....-...+ .....++.+ ++|.. +.|. |..+.++...+.+
T Consensus 6 ~~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~ 85 (382)
T TIGR00902 6 FRWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA 85 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 345667777777665544443333222212222222233 333334443 33444 7774 3444444333332
Q ss_pred HHhhcccccceehhhhHHHhccCchhhhchhhhhH
Q psy853 225 YIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYL 259 (314)
Q Consensus 225 yi~s~~yp~~y~li~as~l~G~gagllW~aqg~yl 259 (314)
. ...+-++.|.++..-++.|.+.+..++...++.
T Consensus 86 ~-~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~ 119 (382)
T TIGR00902 86 A-FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALA 119 (382)
T ss_pred H-HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHH
Confidence 1 111234566677777778877777776655554
No 166
>PRK11043 putative transporter; Provisional
Probab=91.79 E-value=1.2 Score=42.67 Aligned_cols=97 Identities=6% Similarity=-0.066 Sum_probs=54.3
Q ss_pred HHHHhhhcccee--eeccceeeeehhhhhHHH-----Hhhccc-ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhh
Q psy853 196 ALVLSCIFVPTF--RLTVKWTLCVSMMCYLPY-----IGFQFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYA 267 (314)
Q Consensus 196 ~~~is~~f~P~I--~lG~K~sLvig~l~Y~iy-----i~s~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~ 267 (314)
.+.++.++...+ ++|.|..+..+.+...+- ...... +..+.++.+.++.|++.+.++...-++..+..
T Consensus 250 ~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 325 (401)
T PRK11043 250 AFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPF---- 325 (401)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC----
Confidence 344455555555 788777554443332222 122222 23444455667778888777766544443322
Q ss_pred hhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 268 KLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 268 ~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
++.+++..|+...+.......|..+...+
T Consensus 326 -------~~~~g~~~g~~~~~~~~~~~~~~~~~g~l 354 (401)
T PRK11043 326 -------PQATGKAAALQNTLQLGLCFLASLLVSAL 354 (401)
T ss_pred -------cccChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34578888888877666666666555444
No 167
>TIGR00901 2A0125 AmpG-related permease.
Probab=91.77 E-value=0.24 Score=46.68 Aligned_cols=96 Identities=11% Similarity=0.144 Sum_probs=65.4
Q ss_pred HHhhhcccee-ee-----cccee-eeehhhhhHHHHhh-ccc---ccceehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853 198 VLSCIFVPTF-RL-----TVKWT-LCVSMMCYLPYIGF-QFY---PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY 266 (314)
Q Consensus 198 ~is~~f~P~I-~l-----G~K~s-Lvig~l~Y~iyi~s-~~y---p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y 266 (314)
.+.-+++|.+ ++ |.|+. ++++.+...+..+. -+. ...+.++....+.|++.+...++..+++.+..
T Consensus 36 ~~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~--- 112 (356)
T TIGR00901 36 SLKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEIL--- 112 (356)
T ss_pred HHHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 3333555666 54 88887 45666655554322 233 23344556666778888888888888888776
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
.++.+++..++....+..+.++|+.+...+
T Consensus 113 -------~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l 142 (356)
T TIGR00901 113 -------SDEELGYGSTIYIVGYRAGMLLSGSLALVL 142 (356)
T ss_pred -------CHhhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788999998888899999888877543
No 168
>KOG2504|consensus
Probab=91.72 E-value=0.84 Score=47.08 Aligned_cols=57 Identities=11% Similarity=0.138 Sum_probs=45.4
Q ss_pred eeccceeeeehhhhhHH-HHhhcccccc-eehhhhHHHhccCchhhhchhhhhHhhhhh
Q psy853 208 RLTVKWTLCVSMMCYLP-YIGFQFYPRF-YTLVPAGILVGIGAAPMWAAKATYLTQVGA 264 (314)
Q Consensus 208 ~lG~K~sLvig~l~Y~i-yi~s~~yp~~-y~li~as~l~G~gagllW~aqg~ylt~~s~ 264 (314)
++|+|.++++|++.+++ ++++-|-.+. .+++-.+++.|+|-|+.|...-..+..|-+
T Consensus 107 rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~ 165 (509)
T KOG2504|consen 107 RFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE 165 (509)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH
Confidence 99999999999987754 4455554444 456788999999999999998888886654
No 169
>PRK03893 putative sialic acid transporter; Provisional
Probab=91.63 E-value=0.29 Score=48.34 Aligned_cols=99 Identities=9% Similarity=-0.021 Sum_probs=54.6
Q ss_pred HHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcc-ccc--ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhh
Q psy853 195 AALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-YPR--FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKL 269 (314)
Q Consensus 195 ~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-yp~--~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~ 269 (314)
....++.++.+.+ ++|.|+.++++.+.-.+...... .+. .+.+.....+.|+.....++...+++.++.
T Consensus 322 ~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 395 (496)
T PRK03893 322 FGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYF------ 395 (496)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhC------
Confidence 3344555555555 89999888877654444332211 111 122222222222222223344444544443
Q ss_pred cccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 270 TDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 270 ~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
.++.+++.+|++..+..++..+|.++...+
T Consensus 396 ----~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l 425 (496)
T PRK03893 396 ----DTEQRAAGLGFTYNVGALGGALAPILGALI 425 (496)
T ss_pred ----CHHHhhcccchhhhhhhHHHHHHHHHHHHH
Confidence 356788889999988888888888776644
No 170
>KOG2325|consensus
Probab=91.59 E-value=0.97 Score=46.62 Aligned_cols=112 Identities=23% Similarity=0.251 Sum_probs=71.6
Q ss_pred ChhhHHHHHHHHHHHHhhhc-ccee-----eec-cceeeeehhh----hhHHHHhhcccc--cceehhhhHHHhccCchh
Q psy853 184 GLGTVSLSAIYAALVLSCIF-VPTF-----RLT-VKWTLCVSMM----CYLPYIGFQFYP--RFYTLVPAGILVGIGAAP 250 (314)
Q Consensus 184 ~lG~~slailY~~~~is~~f-~P~I-----~lG-~K~sLvig~l----~Y~iyi~s~~yp--~~y~li~as~l~G~gagl 250 (314)
+.+..-..++=+...+++.+ .|.+ |.+ .|+=|+.|.+ +-.+|.+--+.| ..|.++.+=.+.|+|.+-
T Consensus 67 ~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n 146 (488)
T KOG2325|consen 67 TATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN 146 (488)
T ss_pred CCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc
Confidence 44444445555556666654 4444 444 3776766654 556674333334 468889999999999765
Q ss_pred hhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhC
Q psy853 251 MWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVL 306 (314)
Q Consensus 251 lW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~ 306 (314)
. +..-+|++..+ ..++|.|.++..-.-+-++.++|..+..+....
T Consensus 147 ~-a~lR~Y~a~~s----------~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~L 191 (488)
T KOG2325|consen 147 F-AVLRAYIADAS----------TVEDRPRAFAATSGGFVLGIILGPTIQLAFTPL 191 (488)
T ss_pred H-HHHHHHHHhcc----------CccchHHHHHHhhhHHHHHHHHhHHHHHHHhhh
Confidence 4 23445666555 466777888888887888888888887665543
No 171
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=91.59 E-value=0.58 Score=48.38 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=68.9
Q ss_pred HHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh------cccccceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853 194 YAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF------QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAV 265 (314)
Q Consensus 194 Y~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s------~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~ 265 (314)
+.-..+.++++..+ ++..|+.|+++.+..++-.+. .=..+.|.++....+.|++.++.+++..+++-+.-
T Consensus 55 ~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV-- 132 (524)
T PF05977_consen 55 TLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELV-- 132 (524)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 33445566666666 999999999988765433222 11345677899999999999999999999987775
Q ss_pred hhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 266 YAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 266 y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
.++...+..++.-..++.+.++|..++.++
T Consensus 133 --------~~~~L~~A~al~s~~~niar~iGPalgG~L 162 (524)
T PF05977_consen 133 --------PKEDLPAANALNSISFNIARIIGPALGGIL 162 (524)
T ss_pred --------cHhhHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 234455555666666666666666555544
No 172
>PRK10091 MFS transport protein AraJ; Provisional
Probab=91.42 E-value=2.4 Score=40.63 Aligned_cols=103 Identities=11% Similarity=-0.006 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc--ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853 191 SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ--FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY 266 (314)
Q Consensus 191 ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~--~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y 266 (314)
++......++.++.+.+ ++|.|+.+.++.....+-.... +-+..+..+....+.|++...++......+.+..
T Consensus 242 ~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--- 318 (382)
T PRK10091 242 MLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNA--- 318 (382)
T ss_pred HHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC---
Confidence 34444566777777877 9999998888776555433222 1223333344444555544433332222222211
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
..++..++. .....++.++.+|..+...+.
T Consensus 319 ------~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~ 348 (382)
T PRK10091 319 ------KGGELLGAA--GGQIAFNLGSAIGAYCGGMML 348 (382)
T ss_pred ------CcchHHHHH--HHHHHHHHHHHHHHHHhHHHH
Confidence 112334433 335667889999998887654
No 173
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=91.31 E-value=1.7 Score=42.75 Aligned_cols=29 Identities=14% Similarity=-0.070 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHHhh-HHHHHHHHHHh
Q psy853 275 DAIIVRFFGFFFLAWQTA-ELWGNLISSLE 303 (314)
Q Consensus 275 ~~~~gr~~giF~~~~q~s-~iiGnLIs~~i 303 (314)
++.+++..|++..+.+.+ .++|..+...+
T Consensus 376 ~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l 405 (438)
T TIGR00712 376 KKAAGTAAGFTGLFGYLGGSVAASAIVGYT 405 (438)
T ss_pred hhheeeehhhhchHHHhhhhhhcchhHHHH
Confidence 456777888887666655 35565554433
No 174
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=91.03 E-value=1.5 Score=41.43 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=18.0
Q ss_pred HHHHhhhcccee--eeccceeeeehhhh
Q psy853 196 ALVLSCIFVPTF--RLTVKWTLCVSMMC 221 (314)
Q Consensus 196 ~~~is~~f~P~I--~lG~K~sLvig~l~ 221 (314)
...++.++.+.+ ++|.|..+.++.+.
T Consensus 242 ~~~~~~~~~g~l~~r~g~~~~~~~~~~~ 269 (377)
T PRK11102 242 FLFVMTIINSRFVRRVGALNMLRFGLWI 269 (377)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 344555666666 99999988877653
No 175
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=90.76 E-value=0.77 Score=46.42 Aligned_cols=127 Identities=20% Similarity=0.140 Sum_probs=86.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCChhhHHHHHHHHHHHHhhh-----cccee-eeccceeeeehhhh
Q psy853 148 KWRILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCI-----FVPTF-RLTVKWTLCVSMMC 221 (314)
Q Consensus 148 k~~~l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~lG~~slailY~~~~is~~-----f~P~I-~lG~K~sLvig~l~ 221 (314)
|.+..+|.++--++|.+.|..|.-..-+...++++-++-..-.+.+=+.-.+..- +.+.. ++|.|+..+++.+.
T Consensus 9 k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l 88 (417)
T COG2223 9 KRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLL 88 (417)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHH
Confidence 4556789999999999999999988888888876555544444444444444432 22233 99999998888875
Q ss_pred h--HHHHhh--cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHH
Q psy853 222 Y--LPYIGF--QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFF 285 (314)
Q Consensus 222 Y--~iyi~s--~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF 285 (314)
- +++..+ --+|++|.++..+.++|++.+-+=+++... +..||+ +..|...||+
T Consensus 89 ~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~----s~~fP~-------~~qG~AlGI~ 145 (417)
T COG2223 89 LLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNA----SFFFPK-------EKQGLALGIA 145 (417)
T ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccc----cccCCh-------hhhhHHHHHh
Confidence 3 333333 346777889999999999999887665543 555653 3345555554
No 176
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=90.29 E-value=0.79 Score=44.33 Aligned_cols=95 Identities=16% Similarity=0.081 Sum_probs=62.3
Q ss_pred HHhhhcccee-ee-----ccce-eeeehhhhhHHHH--hhcccc--cceehhhhHHHhccCchhhhchhhhhHhhhhhhh
Q psy853 198 VLSCIFVPTF-RL-----TVKW-TLCVSMMCYLPYI--GFQFYP--RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVY 266 (314)
Q Consensus 198 ~is~~f~P~I-~l-----G~K~-sLvig~l~Y~iyi--~s~~yp--~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y 266 (314)
.+.-+++|.. ++ |.|+ .++++.+..++-. ..+..+ +.|.++...++.|+..+...++..+++.+..
T Consensus 47 ~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~--- 123 (402)
T PRK11902 47 IFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVL--- 123 (402)
T ss_pred HHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 3333455556 77 7765 5777666664322 222222 3455666667777888888888888887775
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853 267 AKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302 (314)
Q Consensus 267 ~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~ 302 (314)
.+++++++.++....+..+.++|+.+...
T Consensus 124 -------~~~~r~~~~~~~~~g~~~g~i~g~~l~~~ 152 (402)
T PRK11902 124 -------HPEERGAGAAVKVLGYRLAMLVSGGLALW 152 (402)
T ss_pred -------ChhhhhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 35668899999888888888888765543
No 177
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=89.27 E-value=0.91 Score=44.43 Aligned_cols=29 Identities=0% Similarity=-0.173 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 275 DAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 275 ~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
.+.+++..|+...+.+++.++|..+...+
T Consensus 364 ~~~~~~a~g~~~~~~~~g~~~~p~~~g~i 392 (412)
T TIGR02332 364 LQARAIAIAVINATGNIGSALSPFLIGIL 392 (412)
T ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhcccc
Confidence 55788999999999999999998776544
No 178
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=89.13 E-value=1.9 Score=42.55 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhc-----ccCCC-ChhhHHHHHHHHHHHHhhhcccee--eeccc
Q psy853 154 NIGSLSLAFMVQFTAFQGTANLQSS-----INAKE-GLGTVSLSAIYAALVLSCIFVPTF--RLTVK 212 (314)
Q Consensus 154 Nvi~lsi~F~l~ftAf~~~~~LqSS-----in~~~-~lG~~slailY~~~~is~~f~P~I--~lG~K 212 (314)
+++.+.+..++.+.++......... .+... ..|. ..++.+....++.++...+ +++.|
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~-~~~~~~~~~~i~~~~~g~l~d~~~~~ 327 (465)
T TIGR00894 262 PVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGL-LSSLPYLFAWLCSIFAGYLADFLKSS 327 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555566666665555544333222 11111 1222 2334566666666666666 55433
No 179
>PRK11010 ampG muropeptide transporter; Validated
Probab=88.63 E-value=2.5 Score=42.78 Aligned_cols=95 Identities=11% Similarity=0.034 Sum_probs=48.2
Q ss_pred HHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-----cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhh
Q psy853 195 AALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-----QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYA 267 (314)
Q Consensus 195 ~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-----~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~ 267 (314)
....++.++.+.+ ++|.|+.++++.++.++.... ...+..+.++....+..++.++...+.-+++.+++.
T Consensus 270 i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~--- 346 (491)
T PRK11010 270 LATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCN--- 346 (491)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---
Confidence 3556777777777 999888777766544433222 112333333444445344444444444455555542
Q ss_pred hhcccchhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy853 268 KLTDQAVDAIIVRFFGFFFLAWQTAELWGNLI 299 (314)
Q Consensus 268 ~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLI 299 (314)
++..++-+|+..++..++.++++.+
T Consensus 347 -------~~~~~t~~gl~~s~~~lg~~~~~~~ 371 (491)
T PRK11010 347 -------KSFSATQFALLSALSAVGRVYVGPV 371 (491)
T ss_pred -------CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2223344555555555555544443
No 180
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=88.40 E-value=0.15 Score=52.79 Aligned_cols=70 Identities=23% Similarity=0.423 Sum_probs=3.0
Q ss_pred ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh-CCCCCCC
Q psy853 234 FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETV-LPDIPEP 312 (314)
Q Consensus 234 ~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~-~~~~~~~ 312 (314)
++.++.|-++.|+|++++|+---+|+-++. .++.-+.|.|+++++..+|.++|=+++...|. ..|+++.
T Consensus 141 ~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv----------~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~ 210 (539)
T PF03137_consen 141 FYVFILGQLLIGIGATPLYTLGITYIDDNV----------SKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKV 210 (539)
T ss_dssp -----------SSS------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhccccCCccceeeeecccc----------ccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccc
Confidence 466789999999999999999999999987 35567899999999999999999999887774 4677765
Q ss_pred C
Q psy853 313 S 313 (314)
Q Consensus 313 ~ 313 (314)
+
T Consensus 211 ~ 211 (539)
T PF03137_consen 211 P 211 (539)
T ss_dssp -
T ss_pred c
Confidence 3
No 181
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=88.24 E-value=5 Score=39.51 Aligned_cols=70 Identities=7% Similarity=-0.131 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcccccceehhhhHHHhccCchhhhchhhhh
Q psy853 189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATY 258 (314)
Q Consensus 189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp~~y~li~as~l~G~gagllW~aqg~y 258 (314)
-++...+.++++.++...+ |++.|+.+.+..++-.+-.+.......+..+.+-++.|+..+++|++--+.
T Consensus 274 ~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl 345 (410)
T TIGR00885 274 YNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGI 345 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556678888888777 999988776665544444333333323334677788899999999644333
No 182
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=87.48 E-value=3.5 Score=42.27 Aligned_cols=144 Identities=13% Similarity=0.093 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhhhhc-----ccC-C--------C--ChhhHHHHHHHHHHHHhhhcccee--eecc-
Q psy853 151 ILKNIGSLSLAFMVQFTAFQGTANLQSS-----INA-K--------E--GLGTVSLSAIYAALVLSCIFVPTF--RLTV- 211 (314)
Q Consensus 151 ~l~Nvi~lsi~F~l~ftAf~~~~~LqSS-----in~-~--------~--~lG~~slailY~~~~is~~f~P~I--~lG~- 211 (314)
.-+.+..+++.-++...+|.+.....+. +.. . + ..|..++.+......+.+++.|.+ ++|.
T Consensus 256 mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~ 335 (477)
T TIGR01301 256 LPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAG 335 (477)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3456778888888888888887776543 211 1 1 136677766666667888889988 8985
Q ss_pred ceeeeeh----hhhhHHHHhhccc---------------cc---ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhh
Q psy853 212 KWTLCVS----MMCYLPYIGFQFY---------------PR---FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKL 269 (314)
Q Consensus 212 K~sLvig----~l~Y~iyi~s~~y---------------p~---~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~ 269 (314)
|..-.++ .+++......... |. .+..+...++.|+.-+.+-.-.-+.++++..
T Consensus 336 k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~----- 410 (477)
T TIGR01301 336 KRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSS----- 410 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcc-----
Confidence 5553444 3333322211111 11 2445556666776655544444444444331
Q ss_pred cccchhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853 270 TDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302 (314)
Q Consensus 270 ~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~ 302 (314)
++++..|.+.|++-.+..+.|++-++.+..
T Consensus 411 ---~~~~~~G~~mgilN~~I~lpQii~sl~~g~ 440 (477)
T TIGR01301 411 ---NLGAGQGLSMGVLNLAIVIPQIIVSLGSGP 440 (477)
T ss_pred ---ccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 123456889999999988888888876655
No 183
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=87.17 E-value=6.4 Score=39.76 Aligned_cols=92 Identities=12% Similarity=0.107 Sum_probs=72.9
Q ss_pred cccee--eeccceeeeehhhhhHHHHhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHH
Q psy853 203 FVPTF--RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVR 280 (314)
Q Consensus 203 f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr 280 (314)
..|.+ +-..++-..++.+++..-+.+-...+.+.+.++-.+.|+|.|++=++.-+-....+ .++..|.
T Consensus 268 l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt----------~~~~aG~ 337 (403)
T PF03209_consen 268 LSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLT----------SAGRAGL 337 (403)
T ss_pred hcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCC----------CCcchhH
Confidence 34444 33455666777788888888888888999999999999999999888777776666 3567889
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 281 FFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 281 ~~giF~~~~q~s~iiGnLIs~~il 304 (314)
+.|.|-....++.-+|+.+...++
T Consensus 338 ~mG~WGaaQA~A~Glg~~~GG~~~ 361 (403)
T PF03209_consen 338 FMGAWGAAQAIARGLGTFLGGALR 361 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888888888776654
No 184
>PRK10133 L-fucose transporter; Provisional
Probab=86.51 E-value=4.3 Score=40.36 Aligned_cols=72 Identities=8% Similarity=-0.036 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhh
Q psy853 189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQ 261 (314)
Q Consensus 189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~ 261 (314)
.++.....+.+++++...+ |+|.|+.+.++.++-+...+. -+.+.. ..+.+-++.|++.+.+|...-+...+
T Consensus 300 ~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~ 374 (438)
T PRK10133 300 YLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIK 374 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344445556666666666 999998887776544332222 223332 23456678999999999776554433
No 185
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=86.32 E-value=2.4 Score=44.83 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=40.2
Q ss_pred HHHhhhcccee--eeccceeeeehhhhhHH-HHhhcccccceehhhhHHHhccCchhhhch
Q psy853 197 LVLSCIFVPTF--RLTVKWTLCVSMMCYLP-YIGFQFYPRFYTLVPAGILVGIGAAPMWAA 254 (314)
Q Consensus 197 ~~is~~f~P~I--~lG~K~sLvig~l~Y~i-yi~s~~yp~~y~li~as~l~G~gagllW~a 254 (314)
.++++.+...+ .+|.||.+++|.+.+.+ .+.+---.+.-+++.+.++.|+|+|..-..
T Consensus 91 ~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~ 151 (599)
T PF06609_consen 91 SAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELA 151 (599)
T ss_pred HHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHH
Confidence 44555555555 99999999998876543 223333455667888999999998876544
No 186
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=86.14 E-value=2.2 Score=41.22 Aligned_cols=68 Identities=15% Similarity=-0.030 Sum_probs=37.8
Q ss_pred HHHHhhhcccee--eeccceeeeehhhhhHHHHhh----ccc-ccceehhhhHHHhccCchhhhchhhhhHhhhh
Q psy853 196 ALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF----QFY-PRFYTLVPAGILVGIGAAPMWAAKATYLTQVG 263 (314)
Q Consensus 196 ~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s----~~y-p~~y~li~as~l~G~gagllW~aqg~ylt~~s 263 (314)
...++.++.+.+ ++|.|+.++++.++..+.... .+. ++.+.++.+..+.++..++.+.+.......+.
T Consensus 258 ~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 332 (402)
T PRK11902 258 ATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALC 332 (402)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355667777776 899988887776654433222 122 34455555554544555555554444444444
No 187
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=86.04 E-value=1.3 Score=42.52 Aligned_cols=66 Identities=12% Similarity=0.033 Sum_probs=36.2
Q ss_pred HHHHhhhcccee--eecc----ceeeeehhhhhHHHHhhcccccceehhhhHHHhccCchhhhchhhhhHhhh
Q psy853 196 ALVLSCIFVPTF--RLTV----KWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQV 262 (314)
Q Consensus 196 ~~~is~~f~P~I--~lG~----K~sLvig~l~Y~iyi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~ 262 (314)
...++.++...+ ++|. +..+.++..+..+ .....-++.|.++....+.|++.+..|.+..++....
T Consensus 51 ~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~ 122 (382)
T PRK11128 51 ARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAV-AFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW 122 (382)
T ss_pred HHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHH-HHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence 334445444443 7775 2333333333222 1112235567777788888998888888766655443
No 188
>PRK15075 citrate-proton symporter; Provisional
Probab=85.39 E-value=1.9 Score=42.23 Aligned_cols=95 Identities=12% Similarity=0.010 Sum_probs=46.7
Q ss_pred HHHhhhcccee--eeccceeeeehhhhhHHHH--h-hcc--cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhh
Q psy853 197 LVLSCIFVPTF--RLTVKWTLCVSMMCYLPYI--G-FQF--YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKL 269 (314)
Q Consensus 197 ~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi--~-s~~--yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~ 269 (314)
..+++++.+.+ ++|.|+.++++.++-.+.. . ... .+....+....++.|++.+..+.....++.+..
T Consensus 287 ~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~------ 360 (434)
T PRK15075 287 NFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVM------ 360 (434)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHC------
Confidence 44555555656 8999998877654322211 1 111 111112223334555666655555555555544
Q ss_pred cccchhhhHHHHHHHHHHHHHh-hHHHHHHHHH
Q psy853 270 TDQAVDAIIVRFFGFFFLAWQT-AELWGNLISS 301 (314)
Q Consensus 270 ~~~~~~~~~gr~~giF~~~~q~-s~iiGnLIs~ 301 (314)
.++.+++..|+.+.+... +..+|+.+..
T Consensus 361 ----p~~~rg~~~g~~~~~~~~~~g~~~p~~~g 389 (434)
T PRK15075 361 ----PAEVRTAGFSLAYSLATAIFGGFTPAIST 389 (434)
T ss_pred ----CCCccchheeHHHHHHHHHHhhhHHHHHH
Confidence 244566666665544443 2344444443
No 189
>PRK15011 sugar efflux transporter B; Provisional
Probab=85.11 E-value=5.2 Score=38.58 Aligned_cols=94 Identities=11% Similarity=0.046 Sum_probs=43.1
Q ss_pred hcccee-eeccceeeeehh-hhhHH-HHhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhH
Q psy853 202 IFVPTF-RLTVKWTLCVSM-MCYLP-YIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAII 278 (314)
Q Consensus 202 ~f~P~I-~lG~K~sLvig~-l~Y~i-yi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~ 278 (314)
++.... ++|.|+.+++.. +..++ ..+..+-++.+.++....+.|...+..++..-.+..+... ++++..
T Consensus 70 ~~~~~~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 141 (393)
T PRK15011 70 FLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHAD--------KTGREA 141 (393)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh--------hccchH
Confidence 333334 999998754433 32211 1111122334444444444444444555544444433221 011223
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 279 VRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 279 gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
+.+.++......++.++|.++...+
T Consensus 142 ~~~~~~~~~~~~lg~~~g~~i~~~l 166 (393)
T PRK15011 142 VMFSSFLRAQVSLAWVIGPPLAYAL 166 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4555666556666666666555443
No 190
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=84.73 E-value=8.1 Score=36.88 Aligned_cols=61 Identities=10% Similarity=-0.051 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhccc-ccceehhhhHHHhccCchhhh
Q psy853 192 AIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFY-PRFYTLVPAGILVGIGAAPMW 252 (314)
Q Consensus 192 ilY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~y-p~~y~li~as~l~G~gagllW 252 (314)
+......++.++.+.+ ++|.|+.++++.+...+-...... +..+..+....+.++|.+..|
T Consensus 247 ~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 310 (392)
T PRK10473 247 LTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGF 310 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455666777776 999999888877655443333222 222233344444454444444
No 191
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=84.70 E-value=0.32 Score=46.40 Aligned_cols=143 Identities=18% Similarity=0.277 Sum_probs=1.1
Q ss_pred hhhhHHHHHHHHHHHHHH----HHHHhHH-hhhhcccCCCChhhHHHHHHHHHHHHhhhcccee----ee---ccceeee
Q psy853 149 WRILKNIGSLSLAFMVQF----TAFQGTA-NLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF----RL---TVKWTLC 216 (314)
Q Consensus 149 ~~~l~Nvi~lsi~F~l~f----tAf~~~~-~LqSSin~~~~lG~~slailY~~~~is~~f~P~I----~l---G~K~sLv 216 (314)
+.+++.+....+..++.| ..|-+.. .+++..+. +.-.+..-.+++..|.++=+++-.+ ++ .+||.++
T Consensus 139 ~~v~~~i~~~~~~i~~~f~vTl~~FP~it~~v~s~~~~-~~~~~f~pv~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~ 217 (309)
T PF01733_consen 139 WVVLKKIWPYALSIFLVFFVTLSVFPGITSAVQSSNNP-DWSSYFVPVVLFLLFNLGDFIGRFLASWPRWPGPSPRWLWI 217 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhheeeeccceeeeeeccccC-CCccHHHHHHHHHHHHHHHHhcchhcceeEecccccccHHH
Confidence 345555655555544444 4444441 12222121 1111333345677777777765544 23 4777666
Q ss_pred ehhh---hhHHHHhhccccc----------ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccc-hhhhHHHHH
Q psy853 217 VSMM---CYLPYIGFQFYPR----------FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQA-VDAIIVRFF 282 (314)
Q Consensus 217 ig~l---~Y~iyi~s~~yp~----------~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~-~~~~~gr~~ 282 (314)
.+.+ .+++|+.++..|. .+..++--++.|+..|-+ +..+--|+...-++ +++..|...
T Consensus 218 ~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl--------~tl~m~~~p~~v~~~e~e~aG~~~ 289 (309)
T PF01733_consen 218 LSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL--------STLAMMYAPKSVSPEERELAGSVM 289 (309)
T ss_dssp ---------------------------------------------------------HHHH-------------------
T ss_pred HHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh--------hhceeeeCCCcCCHHHHHHHHHHH
Confidence 5332 5677788876644 233344455666555533 22222222222212 223333333
Q ss_pred HHHHHHHHhhHHHHHHHHHHh
Q psy853 283 GFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 283 giF~~~~q~s~iiGnLIs~~i 303 (314)
++ +..+|...|..+++++
T Consensus 290 ~~---~L~~Gl~~Gs~ls~~~ 307 (309)
T PF01733_consen 290 SF---FLSFGLFIGSVLSFLL 307 (309)
T ss_dssp ---------------------
T ss_pred HH---HHHHHHHHHHHHHHHh
Confidence 33 3467778888887754
No 192
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=84.34 E-value=3.3 Score=41.81 Aligned_cols=119 Identities=18% Similarity=0.184 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhc-ccCCCChhhHHHHHHHHHHHHhhhcccee------eeccceeeeehhhhh---
Q psy853 153 KNIGSLSLAFMVQFTAFQGTANLQSS-INAKEGLGTVSLSAIYAALVLSCIFVPTF------RLTVKWTLCVSMMCY--- 222 (314)
Q Consensus 153 ~Nvi~lsi~F~l~ftAf~~~~~LqSS-in~~~~lG~~slailY~~~~is~~f~P~I------~lG~K~sLvig~l~Y--- 222 (314)
+|.+.++.-+++.|.+|......-+- +++..|+.-.-..++|++.++..++..++ |+|-|+-++.-...-
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l 86 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLL 86 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHH
Confidence 36677777777777776665555332 22224666778889999988887765433 899777765443222
Q ss_pred -HHHHhhcccccc-eehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcc
Q psy853 223 -LPYIGFQFYPRF-YTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTD 271 (314)
Q Consensus 223 -~iyi~s~~yp~~-y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~ 271 (314)
++|..--+.|-. .-.+.+.++.|+--++.|.+-..-.-.++++.++..+
T Consensus 87 ~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~ 137 (412)
T PF01306_consen 87 FGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRNG 137 (412)
T ss_dssp CHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHhc
Confidence 222221122221 2234566677777778787776666666666666544
No 193
>KOG3762|consensus
Probab=83.91 E-value=0.79 Score=48.07 Aligned_cols=62 Identities=21% Similarity=0.447 Sum_probs=49.5
Q ss_pred hcccee--eeccceeeeehhhhhHHHH-hhcccccceehhhhHHHhccCchhhhchhhhhHhhhh
Q psy853 202 IFVPTF--RLTVKWTLCVSMMCYLPYI-GFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVG 263 (314)
Q Consensus 202 ~f~P~I--~lG~K~sLvig~l~Y~iyi-~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s 263 (314)
+|.-.+ |+|--..|.+|..|++.=. +--+.-++|.++|--++.|+.-+.+|++..+|+...+
T Consensus 424 ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~va 488 (618)
T KOG3762|consen 424 FFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVA 488 (618)
T ss_pred HHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 333354 9999999999887765533 2234456899999999999999999999999998887
No 194
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=83.11 E-value=7.4 Score=39.83 Aligned_cols=71 Identities=11% Similarity=0.156 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhcc--cCCCChhhHHHHHHHHHHHHhhh---cccee--eeccceeeeehhhhhHHHH
Q psy853 154 NIGSLSLAFMVQFTAFQGTANLQSSI--NAKEGLGTVSLSAIYAALVLSCI---FVPTF--RLTVKWTLCVSMMCYLPYI 226 (314)
Q Consensus 154 Nvi~lsi~F~l~ftAf~~~~~LqSSi--n~~~~lG~~slailY~~~~is~~---f~P~I--~lG~K~sLvig~l~Y~iyi 226 (314)
+++++++..++.|+.|.++...-... +..+..+ .+...+....+..+ +...+ |+|.|+.+.++.+...+..
T Consensus 253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~~~~--~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~ 330 (462)
T PRK15034 253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQFPDVN--ILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFS 330 (462)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH--HHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHH
Confidence 57888888888898888776422111 1111111 11111222233333 33344 9999998888776554443
No 195
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=82.65 E-value=5.3 Score=42.33 Aligned_cols=109 Identities=15% Similarity=0.149 Sum_probs=67.6
Q ss_pred hhhHHHHHHHHHHHHhhhcccee--eec-cceeeeehhhhhHHHHhhccc--c-cceehhhhHHHhccCchhhhchhhhh
Q psy853 185 LGTVSLSAIYAALVLSCIFVPTF--RLT-VKWTLCVSMMCYLPYIGFQFY--P-RFYTLVPAGILVGIGAAPMWAAKATY 258 (314)
Q Consensus 185 lG~~slailY~~~~is~~f~P~I--~lG-~K~sLvig~l~Y~iyi~s~~y--p-~~y~li~as~l~G~gagllW~aqg~y 258 (314)
.|..++..-++.. +++++.+.+ +++ .||.++++.+..+.|.++..- | +....+.-.++.|+|.| |+..-.+
T Consensus 351 ~~~~s~~~~fg~~-~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG--~~~~~~~ 427 (599)
T PF06609_consen 351 IGWISSPVGFGSC-AGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIG--GILVPAI 427 (599)
T ss_pred eehhhhhHHHHHH-HHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHH--HHHHHHH
Confidence 3445554444333 334444444 444 899999999888888766432 2 22233455667776654 3333332
Q ss_pred H-hhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853 259 L-TQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETV 305 (314)
Q Consensus 259 l-t~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~ 305 (314)
+ ++... .++.++.-+|+--+++..+..+|..+-.-++.
T Consensus 428 ~~~ql~~---------p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~ 466 (599)
T PF06609_consen 428 VIAQLIV---------PDEDIGTATGLTGSIRSIGGSIGYAIYNAIFT 466 (599)
T ss_pred HeeEeee---------CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2 33331 36789999999999999999999988766553
No 196
>PTZ00207 hypothetical protein; Provisional
Probab=81.87 E-value=5.3 Score=42.19 Aligned_cols=52 Identities=8% Similarity=-0.048 Sum_probs=39.8
Q ss_pred eehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy853 235 YTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISS 301 (314)
Q Consensus 235 y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~ 301 (314)
-.+++++++.|++.|..|...-....+. -|+.+|..+-+..++..+|.++-.
T Consensus 453 ~~L~~~~~lvg~~~G~~~~~~~~i~sel---------------Fgk~~g~~yN~~~~a~pigs~~~n 504 (591)
T PTZ00207 453 AALPLPYFIAAFANGFMAATIALVTRTI---------------FAKDPAKHYNFCFLGSVLSAIFLN 504 (591)
T ss_pred cHhHHHHHHHHHHhhHhHHHHHHHHHHH---------------hccchHHHhhHHhHHHHHHHHHHH
Confidence 5889999999999999998887765444 345667777777777777776653
No 197
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=81.84 E-value=6.2 Score=33.76 Aligned_cols=106 Identities=17% Similarity=0.226 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHH-Hhhccccc--ceehhhhHHHhccCchhhhchhhhhHhhhhh
Q psy853 190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPY-IGFQFYPR--FYTLVPAGILVGIGAAPMWAAKATYLTQVGA 264 (314)
Q Consensus 190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iy-i~s~~yp~--~y~li~as~l~G~gagllW~aqg~ylt~~s~ 264 (314)
.+.......++.++.+.+ +.|.|..++++...+... +...+.+. .+.++....+.|++.+..+.....++.+...
T Consensus 45 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 124 (338)
T COG0477 45 LSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFP 124 (338)
T ss_pred HHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 333333444444455554 668887777766543332 22222333 4556677777999999999888888877752
Q ss_pred hhhhhcccchhhhHHHHHHHHHH-HHHhhHHHHHHHHHHhh
Q psy853 265 VYAKLTDQAVDAIIVRFFGFFFL-AWQTAELWGNLISSLET 304 (314)
Q Consensus 265 ~y~~~~~~~~~~~~gr~~giF~~-~~q~s~iiGnLIs~~il 304 (314)
+ ...++...++... ....+.++|.++...+.
T Consensus 125 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T COG0477 125 E---------ATERGLAVGLVTLGAGALGLALGPLLAGLLL 156 (338)
T ss_pred c---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 0456777777777 57778888886665544
No 198
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=81.10 E-value=13 Score=36.22 Aligned_cols=30 Identities=10% Similarity=-0.078 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 275 DAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 275 ~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
++.+++..|+...+-+++.++|.++...++
T Consensus 311 ~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~ 340 (368)
T TIGR00903 311 KELHGKAAGAIGFTSRAISVALALAAMLFI 340 (368)
T ss_pred hhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 556778888888888888777776654433
No 199
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=81.04 E-value=9.1 Score=36.88 Aligned_cols=103 Identities=9% Similarity=-0.030 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHh----hhcccee--e----ecc-ceeeeehhhhhHHHHh-hcccccc------eehhhhHHHhccCc
Q psy853 187 TVSLSAIYAALVLS----CIFVPTF--R----LTV-KWTLCVSMMCYLPYIG-FQFYPRF------YTLVPAGILVGIGA 248 (314)
Q Consensus 187 ~~slailY~~~~is----~~f~P~I--~----lG~-K~sLvig~l~Y~iyi~-s~~yp~~------y~li~as~l~G~ga 248 (314)
....+.+.....+. ..+...+ + +|. |.-++++.+..++-.. ..+-|.. +.++....+.|++.
T Consensus 34 ~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (437)
T TIGR00792 34 AAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFY 113 (437)
T ss_pred HHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHH
Confidence 34444444444444 3344444 5 444 3356677666664333 3333432 22344455556666
Q ss_pred hhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHH
Q psy853 249 APMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNL 298 (314)
Q Consensus 249 gllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnL 298 (314)
+...+...+...+.+. +++.|++..++.......+.+++.+
T Consensus 114 ~~~~~~~~al~~~~~~---------~~~~R~~~~~~~~~~~~~g~~l~~~ 154 (437)
T TIGR00792 114 SFVNIPYWSLVPAITL---------DPRERESLSTFRRFGATLGGLLVAV 154 (437)
T ss_pred HhhcccHhhCcccccC---------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555555444431 2345666666655544554444433
No 200
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=81.01 E-value=3 Score=41.81 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=75.7
Q ss_pred hcccCCCChhhHHHHHHH----HHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcccccceehhhhHHHhccCchh
Q psy853 177 SSINAKEGLGTVSLSAIY----AALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAP 250 (314)
Q Consensus 177 SSin~~~~lG~~slailY----~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp~~y~li~as~l~G~gagl 250 (314)
..+.++-|+.+...+++- .+|++.++++|.+ |+|.+.+++++.+.-++=++-+-+...+.++.+.++.|+|.++
T Consensus 36 ~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~~~~L~~gt~l~G~gIav 115 (395)
T COG2807 36 DEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLPLLFLGTLLAGAGIAV 115 (395)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhHHH
Confidence 344444455555444443 4578888899998 9999999999988777777767777788899999999999988
Q ss_pred hhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy853 251 MWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLI 299 (314)
Q Consensus 251 lW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLI 299 (314)
.-+--...+-+. -.+..+..+|++-...+.+...|..+
T Consensus 116 ~nVLLPslIK~~-----------Fpk~~~~mtglYs~sl~~~aaLaa~l 153 (395)
T COG2807 116 INVLLPSLIKRD-----------FPKRVGLMTGLYSTSLGAGAALAAAL 153 (395)
T ss_pred HHHhhhHHHHhh-----------cccchhhHHhHHHHHHHHHHHHHhhh
Confidence 766555544221 23445666666655555555544433
No 201
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=78.75 E-value=2.5 Score=41.59 Aligned_cols=97 Identities=10% Similarity=0.079 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhHHhhhhc-ccCCCChhhHHHHHHHHHHHHhhh----cccee--ee-ccceeeeehhhhhHHHH-hh
Q psy853 158 LSLAFMVQFTAFQGTANLQSS-INAKEGLGTVSLSAIYAALVLSCI----FVPTF--RL-TVKWTLCVSMMCYLPYI-GF 228 (314)
Q Consensus 158 lsi~F~l~ftAf~~~~~LqSS-in~~~~lG~~slailY~~~~is~~----f~P~I--~l-G~K~sLvig~l~Y~iyi-~s 228 (314)
+++-+|+.|.+|-......+. +.++.|+...-..++.+.+.++.+ +...+ ++ +.|+.+.++.++..+.. ..
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~ 86 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA 86 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 444455555554444333322 112223333344444444444444 44333 77 46888887776664333 22
Q ss_pred cccccceehhhhHHHhccCchhhhch
Q psy853 229 QFYPRFYTLVPAGILVGIGAAPMWAA 254 (314)
Q Consensus 229 ~~yp~~y~li~as~l~G~gagllW~a 254 (314)
.+..+.+.+++.-++.|++.++.+..
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~ 112 (418)
T TIGR00889 87 AQVTTPAGMFPVLLANSLAYMPTIAL 112 (418)
T ss_pred HHhcCHHHHHHHHHHHHHHHccHHHH
Confidence 33344455555556667665555543
No 202
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=78.33 E-value=3.2 Score=39.41 Aligned_cols=63 Identities=10% Similarity=0.044 Sum_probs=54.1
Q ss_pred ceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhC
Q psy853 234 FYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVL 306 (314)
Q Consensus 234 ~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~ 306 (314)
++..+.+..+.|+|.+++=++...|++.+. .++..++..++..+++.+|.++|.++...+...
T Consensus 10 ~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~----------~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~ 72 (310)
T TIGR01272 10 YVLFLGALFVLASGLTILQVAANPYVSILG----------PIETAASRLALTQAFNKLGTTVAPLFGGSLILS 72 (310)
T ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHC----------CcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 445678999999999999999999999997 355688889999999999999999998876643
No 203
>KOG3626|consensus
Probab=78.20 E-value=2.1 Score=46.31 Aligned_cols=64 Identities=20% Similarity=0.327 Sum_probs=55.2
Q ss_pred ehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhC-CCC
Q psy853 236 TLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVL-PDI 309 (314)
Q Consensus 236 ~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~-~~~ 309 (314)
.++.|-.+.|+|+.++|+---.|+-++.+ ++.-..|.|+.+.+..+|.++|=++..+.++. .|+
T Consensus 239 lff~~q~l~GIG~Tpi~tlGisYiDDnvk----------~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~ 303 (735)
T KOG3626|consen 239 LFFLGQLLLGIGATPIFTLGISYIDDNVK----------KKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDF 303 (735)
T ss_pred HHHHHHHHhhcCCCCCccCCCcccccccc----------ccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeecc
Confidence 45788899999999999999999999983 45678999999999999999999998887764 455
No 204
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=77.21 E-value=10 Score=38.86 Aligned_cols=27 Identities=7% Similarity=0.031 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 277 IIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 277 ~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
..++..+++..+..+|.++|+++..+.
T Consensus 149 ~~~~a~~~~~~~~~lG~ilg~~~g~~~ 175 (477)
T TIGR01301 149 RTRIANAYFSFFMAIGNVLGYAAGAYS 175 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888899999999988764
No 205
>KOG2504|consensus
Probab=76.77 E-value=28 Score=35.96 Aligned_cols=137 Identities=14% Similarity=0.119 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhc----ccCCCChhhHHHHHHHHHHHHhhhcccee--eec--cceeeeehhhhhHHHH
Q psy853 155 IGSLSLAFMVQFTAFQGTANLQSS----INAKEGLGTVSLSAIYAALVLSCIFVPTF--RLT--VKWTLCVSMMCYLPYI 226 (314)
Q Consensus 155 vi~lsi~F~l~ftAf~~~~~LqSS----in~~~~lG~~slailY~~~~is~~f~P~I--~lG--~K~sLvig~l~Y~iyi 226 (314)
.+.+.++.++++.+|..-.-.-.. ..-++......++++=.+..++-++.+.+ +.. .++...++.+.-.+-.
T Consensus 300 fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~ 379 (509)
T KOG2504|consen 300 FLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR 379 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH
Confidence 344444555555554433332222 11223445566666666666666677776 333 3333333333222222
Q ss_pred -hhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy853 227 -GFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISS 301 (314)
Q Consensus 227 -~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~ 301 (314)
..-+...++.++..+++.|++.|..+.-....+.++- .-+...+..|+...+...+.++|..++.
T Consensus 380 ~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~----------g~~~l~~a~Gl~l~~~gi~~l~gpPiag 445 (509)
T KOG2504|consen 380 LFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLV----------GLEKLSNAYGLLLLFQGIGALVGPPIAG 445 (509)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------ChhhcchHHHHHHHHhHHHHHcCcccce
Confidence 1122233467789999999999998877776666664 2445667778888888888888887776
No 206
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=75.68 E-value=3.1 Score=43.09 Aligned_cols=103 Identities=10% Similarity=0.067 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhHHhhhh-----cccCCCChhhHHHHHHHHHHHHhhhccce----e---eeccceeeeehhhhhHHHHh
Q psy853 160 LAFMVQFTAFQGTANLQS-----SINAKEGLGTVSLSAIYAALVLSCIFVPT----F---RLTVKWTLCVSMMCYLPYIG 227 (314)
Q Consensus 160 i~F~l~ftAf~~~~~LqS-----Sin~~~~lG~~slailY~~~~is~~f~P~----I---~lG~K~sLvig~l~Y~iyi~ 227 (314)
..=|.-..+|.+++.+-. +..+.-++....-..+|.+++.-+..+|. + .+|.|.++++|++.|++=..
T Consensus 28 ~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~ 107 (498)
T COG3104 28 FVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHL 107 (498)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 344455666777766532 22211112222333444444444444444 4 89999999999998887666
Q ss_pred hccccc---ceehhhhHHHhccCchhhhchhhhhHhhh
Q psy853 228 FQFYPR---FYTLVPAGILVGIGAAPMWAAKATYLTQV 262 (314)
Q Consensus 228 s~~yp~---~y~li~as~l~G~gagllW~aqg~ylt~~ 262 (314)
...++. ...++++-++.++|.|++=+.....+.++
T Consensus 108 ~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~l 145 (498)
T COG3104 108 VLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGEL 145 (498)
T ss_pred HHhccccccccHHHHHHHHHHhccccccccHHHHHHHh
Confidence 666663 55678888999999999987777766443
No 207
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=75.07 E-value=3.4 Score=44.02 Aligned_cols=111 Identities=15% Similarity=0.308 Sum_probs=69.1
Q ss_pred ChhhHHHHHHHHHHHHhhhcccee-------eeccceeeeehhhhhHHHHhhccc---cc------ceehhhhHHHhccC
Q psy853 184 GLGTVSLSAIYAALVLSCIFVPTF-------RLTVKWTLCVSMMCYLPYIGFQFY---PR------FYTLVPAGILVGIG 247 (314)
Q Consensus 184 ~lG~~slailY~~~~is~~f~P~I-------~lG~K~sLvig~l~Y~iyi~s~~y---p~------~y~li~as~l~G~g 247 (314)
+++......+|..++..+.+.|.+ ++|.++++.++++.|.+=.+.... |. ....+.+=++..+|
T Consensus 19 g~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G 98 (654)
T TIGR00926 19 GFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALG 98 (654)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhh
Confidence 444566667788888888777766 899999999988876552221111 11 12244555666677
Q ss_pred chhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy853 248 AAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISS 301 (314)
Q Consensus 248 agllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~ 301 (314)
.|.+=.+-++...+- | ++.+++.+.+++.+|+..-+++.+++.++.-
T Consensus 99 ~GgiKp~vsaf~gdq---f----~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~ 145 (654)
T TIGR00926 99 TGGIKPCVSAFGGDQ---F----EERQLSLRSRFFSFFYFAINAGSLISTIITP 145 (654)
T ss_pred ccccccCchhhhHhh---c----CccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776665432 1 1112345677777777777777766655544
No 208
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=73.14 E-value=7.1 Score=39.14 Aligned_cols=22 Identities=0% Similarity=-0.218 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhhcccee--eeccc
Q psy853 191 SAIYAALVLSCIFVPTF--RLTVK 212 (314)
Q Consensus 191 ailY~~~~is~~f~P~I--~lG~K 212 (314)
++.+....++.++...+ +++.|
T Consensus 295 ~~~~~~~~ig~~~~G~lsDr~~~r 318 (476)
T PLN00028 295 ASFGLMNLFARPAGGYLSDVAARR 318 (476)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHh
Confidence 33444455555555555 77654
No 209
>KOG2615|consensus
Probab=72.25 E-value=1.3 Score=44.78 Aligned_cols=89 Identities=15% Similarity=0.067 Sum_probs=61.6
Q ss_pred eeccceeeeehhhhhHHHHhhcccccce-ehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHH
Q psy853 208 RLTVKWTLCVSMMCYLPYIGFQFYPRFY-TLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFF 286 (314)
Q Consensus 208 ~lG~K~sLvig~l~Y~iyi~s~~yp~~y-~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~ 286 (314)
+.|.|.+|.++.++-++|-.-.-.-+.+ .++.+=.+.|+..+.+=+.. +|+++.. .|+++++-.+.+-
T Consensus 94 ~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~r-AiisdV~----------sek~r~l~ms~v~ 162 (451)
T KOG2615|consen 94 RYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIR-AIISDVV----------SEKYRPLGMSLVG 162 (451)
T ss_pred hhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHH-HHHHhhc----------Chhhccceeeeee
Confidence 9999999999887655543322222222 23444677788877776554 4555554 4678888888889
Q ss_pred HHHHhhHHHHHHHHHHhhhCC
Q psy853 287 LAWQTAELWGNLISSLETVLP 307 (314)
Q Consensus 287 ~~~q~s~iiGnLIs~~il~~~ 307 (314)
..+++|.++|.+|..+.-.+.
T Consensus 163 ~a~~lGfilGPmIGgyla~f~ 183 (451)
T KOG2615|consen 163 TAFGLGFILGPMIGGYLAQFS 183 (451)
T ss_pred hhhhcchhhcchhhhHHHhhH
Confidence 999999999999988776533
No 210
>KOG2816|consensus
Probab=70.88 E-value=13 Score=37.97 Aligned_cols=85 Identities=9% Similarity=0.216 Sum_probs=62.4
Q ss_pred eeccceeeeehhhhhHHHHhhcccccceehhhhHHHhccCc--hhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHH
Q psy853 208 RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGA--APMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFF 285 (314)
Q Consensus 208 ~lG~K~sLvig~l~Y~iyi~s~~yp~~y~li~as~l~G~ga--gllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF 285 (314)
+.|.|..+.+..++-.+......+-.||+++ +.|+.. +.+|...-+|++..+ +++.|..-.|+-
T Consensus 88 ~~grk~~L~~~~~~~~l~~~~~~~~~~~~~~----~~~l~g~~~~~~s~~~a~vadis----------~~~~R~~~~gll 153 (463)
T KOG2816|consen 88 RYGRKVVLLLPLFGTILPALCLLFQGYWFFL----LLGLSGGFSAIFSVGFAYVADIS----------SEEERSSSIGLL 153 (463)
T ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHhh----hcccccchhhhhhhhhhheeecc----------chhHHHHHHHHH
Confidence 9999999999999888887777777666655 444433 446666777776665 466777777887
Q ss_pred HHHHHhhHHHHHHHHHHhhhC
Q psy853 286 FLAWQTAELWGNLISSLETVL 306 (314)
Q Consensus 286 ~~~~q~s~iiGnLIs~~il~~ 306 (314)
.+.+..+..+|.+++..+.+.
T Consensus 154 ~~~~~~~~~~~p~~~~~~~~~ 174 (463)
T KOG2816|consen 154 SGTFGAGLVIGPALGGYLVKF 174 (463)
T ss_pred HHHHHHHHhHHHHHHHHHHHh
Confidence 777777888888777766654
No 211
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=70.27 E-value=4.1 Score=36.33 Aligned_cols=72 Identities=13% Similarity=0.181 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhcCCCCCccccCCcCCCCCCCCCCCCCCCCCCCcccccCCCcccccchhhhhhhHHHHHHHHHHHHHH
Q psy853 87 SCIVVATIMIALMVDPLSSGISNKGFKDEDGNDLQKPPMPMVSGTEEEQIPRGKFKMSTKEKWRILKNIGSLSLAFMVQF 166 (314)
Q Consensus 87 ~c~vlAvl~va~fld~l~~~q~n~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~Nvi~lsi~F~l~f 166 (314)
+.-+++++++.+|+|.+.+-+.-....++... .+++ . + +-.-.-...|+|.-||+.+.|+++++.+
T Consensus 50 ~~~~~~~~~~~lf~ds~~~~~k~~~~~~~~~~--~~~~---~----~-----~~~~~~~~~~fraQRN~YIsGf~LfL~l 115 (192)
T PF05529_consen 50 VFKILLAILLLLFLDSIRRMYKYSSEYEEAKD--DHPN---P----D-----RTEDQVLAKKFRAQRNMYISGFALFLSL 115 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--cCCC---c----c-----chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34567777888999999986444333332100 0111 0 0 0000112457888999999999999877
Q ss_pred HHHHhH
Q psy853 167 TAFQGT 172 (314)
Q Consensus 167 tAf~~~ 172 (314)
..+-..
T Consensus 116 ~I~r~~ 121 (192)
T PF05529_consen 116 VIRRVH 121 (192)
T ss_pred HHHHHH
Confidence 765543
No 212
>KOG0569|consensus
Probab=69.78 E-value=1.5 Score=45.29 Aligned_cols=70 Identities=20% Similarity=0.168 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhcccCCCC----hhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHH
Q psy853 156 GSLSLAFMVQFTAFQGTANLQSSINAKEG----LGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPY 225 (314)
Q Consensus 156 i~lsi~F~l~ftAf~~~~~LqSSin~~~~----lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iy 225 (314)
+.+.+.+.-.++..++...+...+....| ...+.+..+-.+..++++.+|.+ ++|.|+-|+++..+-.+.
T Consensus 273 i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~ 348 (485)
T KOG0569|consen 273 IGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVA 348 (485)
T ss_pred HHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 44445566677777776666665543222 22345555556667777888877 999999999888755443
No 213
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=69.56 E-value=46 Score=32.53 Aligned_cols=28 Identities=4% Similarity=0.001 Sum_probs=17.6
Q ss_pred HHHHHHhhhcccee--eeccceeeeehhhh
Q psy853 194 YAALVLSCIFVPTF--RLTVKWTLCVSMMC 221 (314)
Q Consensus 194 Y~~~~is~~f~P~I--~lG~K~sLvig~l~ 221 (314)
.....++..+...+ ++|.|..++++.+.
T Consensus 289 ~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~ 318 (432)
T PRK10406 289 LFVFMLIQPLIGALSDKIGRRTSMLCFGSL 318 (432)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 33344555555555 99999887776553
No 214
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=69.38 E-value=37 Score=34.95 Aligned_cols=154 Identities=14% Similarity=0.238 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhhhhcccC---CCChhhHHHHHHHHHHHHhhhcccee-----eeccceeeeehhhhh
Q psy853 151 ILKNIGSLSLAFMVQFTAFQGTANLQSSINA---KEGLGTVSLSAIYAALVLSCIFVPTF-----RLTVKWTLCVSMMCY 222 (314)
Q Consensus 151 ~l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~---~~~lG~~slailY~~~~is~~f~P~I-----~lG~K~sLvig~l~Y 222 (314)
.++-++.+++-|||+..+|.-+-.+..++-. ..|.-.+.-.-.+.+......|.|.+ +++.+..+-+-...|
T Consensus 5 E~~k~~~~~l~fF~il~~Y~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F 84 (472)
T TIGR00769 5 ELKKFLPLFLMFFCILFNYTILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPF 84 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHH
Confidence 4567899999999999999999888776422 11222344444444444444556666 677776665555555
Q ss_pred HHHHhhc---ccccceehhhh----HHHhccCch--------hhhchhhhhHhh-------hh-hhhhhhcccchhhhHH
Q psy853 223 LPYIGFQ---FYPRFYTLVPA----GILVGIGAA--------PMWAAKATYLTQ-------VG-AVYAKLTDQAVDAIIV 279 (314)
Q Consensus 223 ~iyi~s~---~yp~~y~li~a----s~l~G~gag--------llW~aqg~ylt~-------~s-~~y~~~~~~~~~~~~g 279 (314)
..|.+.+ +||....+-|- ....+.... --|+...-|+.. .+ .-.+-.+|..+.++-.
T Consensus 85 ~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qak 164 (472)
T TIGR00769 85 LGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAK 164 (472)
T ss_pred HHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4444432 24432221111 111111111 134444444320 01 0001122333566778
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 280 RFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 280 r~~giF~~~~q~s~iiGnLIs~~il 304 (314)
|+++++-..-++|.++|+.+.....
T Consensus 165 Rfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 165 RFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997765544
No 215
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=68.38 E-value=6.8 Score=40.02 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=57.7
Q ss_pred ChhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHh
Q psy853 184 GLGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLT 260 (314)
Q Consensus 184 ~lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt 260 (314)
.+|.. .++.|.++.++=++...+ +.++|.-|.+|-+.-++-... .+.+..+.+..-=+++|+-.|.-|.+.+..++
T Consensus 65 ~lG~i-~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~ 143 (448)
T COG2271 65 QLGIL-GSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTIT 143 (448)
T ss_pred HHHHH-HHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 35544 457788899999999988 999999998887655433222 33445555566667888888999999999887
Q ss_pred hhh
Q psy853 261 QVG 263 (314)
Q Consensus 261 ~~s 263 (314)
.--
T Consensus 144 ~Wf 146 (448)
T COG2271 144 HWF 146 (448)
T ss_pred HHc
Confidence 653
No 216
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=67.26 E-value=24 Score=33.88 Aligned_cols=60 Identities=17% Similarity=0.080 Sum_probs=42.0
Q ss_pred ehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 236 TLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 236 ~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
+.++.+.+.| .++|--|+..+.- |+.-++.+++.+|-.+|+-|++--.-..+-.++.+.+
T Consensus 206 ~f~I~~Fl~G---~f~WgiQ~ViL~l-----PhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~Ii~S~i 265 (267)
T PF07672_consen 206 FFYIFGFLAG---FFLWGIQGVILNL-----PHEYKGYNPKKIGIQFGLIWGFGYIFYTIYDIILSVI 265 (267)
T ss_pred HHHHHHHHHH---HHHHhhhHHHhcC-----hhhhcCCCcceehhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666554 4569999998732 2222334677899999999999888888888777654
No 217
>PRK10429 melibiose:sodium symporter; Provisional
Probab=65.82 E-value=31 Score=34.42 Aligned_cols=79 Identities=11% Similarity=-0.035 Sum_probs=43.0
Q ss_pred eecc-ceeeeehhhhhHHHHhhccccc-c------eehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHH
Q psy853 208 RLTV-KWTLCVSMMCYLPYIGFQFYPR-F------YTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIV 279 (314)
Q Consensus 208 ~lG~-K~sLvig~l~Y~iyi~s~~yp~-~------y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~g 279 (314)
++|. |.-|++|.+..++.....+++. . ..+++..++.+++.++..+...+.+.+.+. +++.|.
T Consensus 72 r~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~---------~~~eR~ 142 (473)
T PRK10429 72 RWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTL---------DKRERE 142 (473)
T ss_pred CCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCC---------CHHHHH
Confidence 4586 6667777777766644444421 1 123344556666777777777776666653 234555
Q ss_pred HHHHHHHHHHHhhHHH
Q psy853 280 RFFGFFFLAWQTAELW 295 (314)
Q Consensus 280 r~~giF~~~~q~s~ii 295 (314)
+.+++-+.+.+.+.++
T Consensus 143 ~l~~~~~~~~~ig~~~ 158 (473)
T PRK10429 143 QLVPYPRFFASLAGFV 158 (473)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555533333444333
No 218
>PRK09669 putative symporter YagG; Provisional
Probab=63.40 E-value=48 Score=32.55 Aligned_cols=83 Identities=10% Similarity=-0.074 Sum_probs=43.4
Q ss_pred ecc-ceeeeehhhhhHHHH-hhcccccc------eehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHH
Q psy853 209 LTV-KWTLCVSMMCYLPYI-GFQFYPRF------YTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVR 280 (314)
Q Consensus 209 lG~-K~sLvig~l~Y~iyi-~s~~yp~~------y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr 280 (314)
+|. |.-|+++.+.+.+-. +.++.|.. ...+....+.+.+.+..-+..++...+.+. +++.|.+
T Consensus 76 ~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~---------~~~eR~~ 146 (444)
T PRK09669 76 HGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITN---------DPRERHS 146 (444)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcC---------CHHHHHH
Confidence 554 455666666664433 34445531 122334444444444444444444444432 2345667
Q ss_pred HHHHHHHHHHhhHHHHHHHH
Q psy853 281 FFGFFFLAWQTAELWGNLIS 300 (314)
Q Consensus 281 ~~giF~~~~q~s~iiGnLIs 300 (314)
..++...+...+..+++++.
T Consensus 147 l~~~r~~~~~~G~~i~~~~~ 166 (444)
T PRK09669 147 LQSWRFALSFIGGLIVSVIA 166 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777766543
No 219
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=62.61 E-value=1.1e+02 Score=30.98 Aligned_cols=138 Identities=13% Similarity=0.084 Sum_probs=63.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCChhhHHHHHHHHHHHHhh----hcccee--eeccceeeeehhhhhH
Q psy853 150 RILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSC----IFVPTF--RLTVKWTLCVSMMCYL 223 (314)
Q Consensus 150 ~~l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~lG~~slailY~~~~is~----~f~P~I--~lG~K~sLvig~l~Y~ 223 (314)
+.+.-.+...+.+.-.|+.|.=..-+-..+. +......+.+...+.++. ++..-+ + +.|.++....+..+
T Consensus 212 ~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~---g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a 287 (394)
T COG2814 212 GVLLGLLATFLFMTGHFALYTYIRPFLESVA---GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLA 287 (394)
T ss_pred hHHHHHHHHHHHHcchhhhHHhHHHHHHHcc---CCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHH
Confidence 3444444444444444444443222222222 333344444444444444 445544 6 88888888755554
Q ss_pred HHHhhc-ccccceeh-hhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy853 224 PYIGFQ-FYPRFYTL-VPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISS 301 (314)
Q Consensus 224 iyi~s~-~yp~~y~l-i~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~ 301 (314)
.-...+ +.+....+ +..-++.|++. ..+.-.+.++.++ + .++..+...++.-+.+|.+-..|..+..
T Consensus 288 ~~~l~l~~~~~~~~~~~~~~~~wg~a~---~~~~~~~~~~~a~-~-------~p~~~~~a~sl~~aa~nlgia~GA~lGG 356 (394)
T COG2814 288 LALLALTFTGASPALALALLFLWGFAF---SPALQGLQTRLAR-L-------APDAADLAGSLNVAAFNLGIALGAALGG 356 (394)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHh---hhhhhHHHHHhcc-c-------CCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 23333322 33333333333 3344455555552 1 1233344455555555666555555544
Q ss_pred H
Q psy853 302 L 302 (314)
Q Consensus 302 ~ 302 (314)
.
T Consensus 357 ~ 357 (394)
T COG2814 357 L 357 (394)
T ss_pred H
Confidence 3
No 220
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=61.69 E-value=0.25 Score=48.16 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhHHhhhhcccCCCChhh--HHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhH
Q psy853 159 SLAFMVQFTAFQGTANLQSSINAKEGLGT--VSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYL 223 (314)
Q Consensus 159 si~F~l~ftAf~~~~~LqSSin~~~~lG~--~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~ 223 (314)
.+.++..++++.....+...+.+..+... ....+......++.+++-.+ ++|.|..++++.+.-+
T Consensus 259 ~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~ 327 (451)
T PF00083_consen 259 LLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMA 327 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33444445555555555444433222222 22233333444444554333 9999988888776543
No 221
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=59.04 E-value=97 Score=30.26 Aligned_cols=55 Identities=7% Similarity=-0.076 Sum_probs=29.6
Q ss_pred hhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853 237 LVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302 (314)
Q Consensus 237 li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~ 302 (314)
.+.+.++.|+|.++..+..-...- .. .+...|+-.++...+.......|+....+
T Consensus 315 ~~~~~~l~~~G~~~~~p~~~~~al-~~----------~~~~~G~a~a~~~~~~~~~~~~~~~~~g~ 369 (413)
T PRK15403 315 SVLGTSLYAFGIGLIFPTLFRFTL-FS----------NNLPKGTVSASLNMVILMVMAVSVEIGRW 369 (413)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHh-cc----------CCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888876654433211 11 11124666666666655555555555443
No 222
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=58.83 E-value=37 Score=34.28 Aligned_cols=98 Identities=15% Similarity=0.221 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhhcccee---eeccceeeeehhhhhH-HHHhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853 190 LSAIYAALVLSCIFVPTF---RLTVKWTLCVSMMCYL-PYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAV 265 (314)
Q Consensus 190 lailY~~~~is~~f~P~I---~lG~K~sLvig~l~Y~-iyi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~ 265 (314)
+++.-......++..|.+ .-..|+..++..+++. -+...-+.|..-. ++..++.|+|.|....-.-..+..-++
T Consensus 249 lsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~-~lw~~llG~G~G~~F~laL~li~~rs~- 326 (395)
T COG2807 249 LSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLP-ILWALLLGLGQGGAFPLALTLILLRSS- 326 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHhCccchHHHHHHHHHHhhcC-
Confidence 445556678889999998 3445555555554443 3444445565433 334699999988877665555444331
Q ss_pred hhhhcccchhhhHHHHHHHHHHHHHhhHHHHH
Q psy853 266 YAKLTDQAVDAIIVRFFGFFFLAWQTAELWGN 297 (314)
Q Consensus 266 y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGn 297 (314)
+.+.-++..|.-.++-.+=..+|.
T Consensus 327 --------~a~~Aa~LSgmaQg~GYllAa~GP 350 (395)
T COG2807 327 --------DAAIAAALSGMAQGVGYLLAAFGP 350 (395)
T ss_pred --------ChHHHHHHHHHhhhhhHHHHhhhh
Confidence 344555666655443333333333
No 223
>KOG4686|consensus
Probab=55.83 E-value=0.97 Score=44.50 Aligned_cols=96 Identities=14% Similarity=0.294 Sum_probs=66.7
Q ss_pred HHHHHHhHHhhhhcccCCCChhhHHHHHHHHHHHHhhhccc----ee---eeccc----eeeeehhhhhHHHHhhccccc
Q psy853 165 QFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVP----TF---RLTVK----WTLCVSMMCYLPYIGFQFYPR 233 (314)
Q Consensus 165 ~ftAf~~~~~LqSSin~~~~lG~~slailY~~~~is~~f~P----~I---~lG~K----~sLvig~l~Y~iyi~s~~yp~ 233 (314)
.|..|++-..+|...+.+.++-+.-...+|..+..-+...| .+ ++|.| .-+++-.++-.+|.+..+...
T Consensus 56 syfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~a 135 (459)
T KOG4686|consen 56 SYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHA 135 (459)
T ss_pred ceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 35557777777776665555556666778887765554444 33 34443 334444445566777777888
Q ss_pred ceehhhhHHHhccCchhhhchhhhhHh
Q psy853 234 FYTLVPAGILVGIGAAPMWAAKATYLT 260 (314)
Q Consensus 234 ~y~li~as~l~G~gagllW~aqg~ylt 260 (314)
.|+.+.+=.+-|+|+--+=++|..|..
T Consensus 136 Fw~M~~GRF~FGIGgESlAVaQN~yav 162 (459)
T KOG4686|consen 136 FWTMLAGRFLFGIGGESLAVAQNKYAV 162 (459)
T ss_pred HHHHHhhheeeccCchhhhhhhcceeE
Confidence 999999999999999999999999854
No 224
>KOG2563|consensus
Probab=54.93 E-value=42 Score=34.72 Aligned_cols=110 Identities=10% Similarity=-0.050 Sum_probs=51.8
Q ss_pred HHHHHHHHH-HHHhhhcccee--eeccceeeeehhhhhHHHHhhcc-------cccce--ehhhhHHHhccCchhhhchh
Q psy853 188 VSLSAIYAA-LVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQF-------YPRFY--TLVPAGILVGIGAAPMWAAK 255 (314)
Q Consensus 188 ~slailY~~-~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~-------yp~~y--~li~as~l~G~gagllW~aq 255 (314)
.-+..+|.+ ....++.+-.+ +.|-|.++.+|+..-++=..-.. -|..+ ....+..+.+.+.-
T Consensus 82 ~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~------ 155 (480)
T KOG2563|consen 82 DWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQP------ 155 (480)
T ss_pred HHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhh------
Confidence 355666654 33444444555 88888888887765543322221 13334 44566666554432
Q ss_pred hhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhCC
Q psy853 256 ATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVLP 307 (314)
Q Consensus 256 g~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~~ 307 (314)
++.-...|-++.+-++++ |.....+=....++|..+|+++.-++.-..
T Consensus 156 --Fim~lPskiA~~WF~~~q--ra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 156 --FILGLPSKIAAVWFPPDQ--RAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred --HhhccccHHHHhhCCcch--hhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 333333344443332222 222222223334455555555554444433
No 225
>KOG2563|consensus
Probab=54.71 E-value=28 Score=35.94 Aligned_cols=155 Identities=16% Similarity=0.179 Sum_probs=78.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCcCCCCCCCCCCCCCCCCCCCcccccCCCcccccchhhhhhhH
Q psy853 74 PDSEIYHITGIYLSCIVVATIMIALMVDPLSSGISNKGFKDEDGNDLQKPPMPMVSGTEEEQIPRGKFKMSTKEKWRILK 153 (314)
Q Consensus 74 ~~~~i~~l~gIy~~c~vlAvl~va~fld~l~~~q~n~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 153 (314)
.++..+++.-.+++.+++|+++++.++ =. +|+ + |||.++..-+-+.|.. ++-+-.. .=.=+
T Consensus 206 ~~~~~~~~~~~f~~~~~l~~l~l~l~~-~~--------~~~---~---P~tPps~s~~~~~~~~---f~~si~~-~~~n~ 266 (480)
T KOG2563|consen 206 SEDNSWLFFTLFLGVECLAALLLALVL-FV--------FTK---K---PPTPPSASQAALQDAS---FPKSIKS-CFKNR 266 (480)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH-Hh--------cCC---C---CCCCCchhHhhhhcCc---HHHHHHH-HHcCc
Confidence 356777787788888888888885543 21 121 1 3333332222111111 1111111 01123
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhh-cccCC----CChhhHHHHHHHHHHHHhhhcccee--e-eccceeeeehhhhhHHH
Q psy853 154 NIGSLSLAFMVQFTAFQGTANLQS-SINAK----EGLGTVSLSAIYAALVLSCIFVPTF--R-LTVKWTLCVSMMCYLPY 225 (314)
Q Consensus 154 Nvi~lsi~F~l~ftAf~~~~~LqS-Sin~~----~~lG~~slailY~~~~is~~f~P~I--~-lG~K~sLvig~l~Y~iy 225 (314)
|.+++.+++...+++|+++..+.. .+... ...|+....++ ..-++++.+...+ | =..|.++.+-...-.++
T Consensus 267 ~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~i-v~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 267 QFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMI-VAGMLGALASGIIADKTKKFKLTTLVLYLFALVG 345 (480)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHH-HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 788888888888999988887765 33221 23555554333 3344555555555 2 23455444444433333
Q ss_pred H-----hhcccccceehhhhHHHhccCc
Q psy853 226 I-----GFQFYPRFYTLVPAGILVGIGA 248 (314)
Q Consensus 226 i-----~s~~yp~~y~li~as~l~G~ga 248 (314)
. ..+..-..+.++..+.+.|+..
T Consensus 346 ~~~l~~~t~~~~~~viv~~t~~~~g~~~ 373 (480)
T KOG2563|consen 346 TLMLLTCTLFLGDSVIVFTTCGLLGFFG 373 (480)
T ss_pred HHHHHHhhccCCceEehhhhHHHHHHhh
Confidence 2 2223333455666666666544
No 226
>KOG2615|consensus
Probab=54.62 E-value=72 Score=32.66 Aligned_cols=90 Identities=18% Similarity=0.184 Sum_probs=52.5
Q ss_pred hcccee-e-ec-cceeeeehhhh-hHHHHhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhh
Q psy853 202 IFVPTF-R-LT-VKWTLCVSMMC-YLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAI 277 (314)
Q Consensus 202 ~f~P~I-~-lG-~K~sLvig~l~-Y~iyi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~ 277 (314)
...|.+ + .| .|-.+..+.++ |+.|..-..-+..-.++.++.+--+..+..=++--.-+..+. ..+.
T Consensus 316 ~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~----------~~~q 385 (451)
T KOG2615|consen 316 ALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCLTSLVHKYG----------PQSQ 385 (451)
T ss_pred hccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHHHHHHHhcC----------Cccc
Confidence 355666 3 33 33333333332 333333333444555667776665555544433333322222 3667
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Q psy853 278 IVRFFGFFFLAWQTAELWGNLISS 301 (314)
Q Consensus 278 ~gr~~giF~~~~q~s~iiGnLIs~ 301 (314)
+|...|++-++..+.-.+|.+++.
T Consensus 386 rG~~~Gi~~Sl~alaRaiGPlv~g 409 (451)
T KOG2615|consen 386 RGTLNGIFRSLGALARAIGPLVSG 409 (451)
T ss_pred chHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999984
No 227
>KOG3098|consensus
Probab=54.56 E-value=1.7e+02 Score=30.27 Aligned_cols=59 Identities=17% Similarity=0.268 Sum_probs=41.5
Q ss_pred cccee-eeccceeeeehhhhhHHHHhhcc--cc-----------------cceehhhhHHHhccCchhhhchhhhhHhh
Q psy853 203 FVPTF-RLTVKWTLCVSMMCYLPYIGFQF--YP-----------------RFYTLVPAGILVGIGAAPMWAAKATYLTQ 261 (314)
Q Consensus 203 f~P~I-~lG~K~sLvig~l~Y~iyi~s~~--yp-----------------~~y~li~as~l~G~gagllW~aqg~ylt~ 261 (314)
..+.+ ++|.|.++.++...+..+..... +| +.+...+-+.++|++.+.+-+..-.++..
T Consensus 302 l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~ 380 (461)
T KOG3098|consen 302 LSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIAL 380 (461)
T ss_pred HhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455 89999999999998887775522 22 33455788899999999876555555433
No 228
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=52.76 E-value=11 Score=36.92 Aligned_cols=94 Identities=21% Similarity=0.289 Sum_probs=44.6
Q ss_pred HHHHHHHHH--HHHHHHHhHHhhhhc-----ccC-CCChhhHHHHHHHHHHHHhhhcccee---eeccceeeeehhhhhH
Q psy853 155 IGSLSLAFM--VQFTAFQGTANLQSS-----INA-KEGLGTVSLSAIYAALVLSCIFVPTF---RLTVKWTLCVSMMCYL 223 (314)
Q Consensus 155 vi~lsi~F~--l~ftAf~~~~~LqSS-----in~-~~~lG~~slailY~~~~is~~f~P~I---~lG~K~sLvig~l~Y~ 223 (314)
++-+++.|+ ++|+.|.+..|+.+- +.+ -+++--| .-|+-|.++||....+ ++=.+..+=+.-....
T Consensus 218 ~~Gl~i~~faG~c~slFSPafNlAtNDqwhtL~~gvP~L~VY---tafFyFs~s~fv~~~~lni~~Ly~P~~g~p~Ssl~ 294 (336)
T PF07168_consen 218 LIGLGIAFFAGLCFSLFSPAFNLATNDQWHTLKPGVPHLVVY---TAFFYFSLSCFVVAIILNIWFLYRPVLGVPKSSLK 294 (336)
T ss_pred eeeehHHHHHhHHHHhcCchhhccccccccccCCCCCceEEE---eehHHHHHHHHHHHHHHHhhheeccccCCChhhHH
Confidence 445555554 568889999998752 111 1333222 2244456666655443 1111111111111111
Q ss_pred HHHhhcccccceehhhhHHHhccCchhhhc
Q psy853 224 PYIGFQFYPRFYTLVPAGILVGIGAAPMWA 253 (314)
Q Consensus 224 iyi~s~~yp~~y~li~as~l~G~gagllW~ 253 (314)
-|+.= + .-.-.-+.++.+||+|.++=..
T Consensus 295 ay~~D-~-~gR~wa~lAG~lCg~GNglQFm 322 (336)
T PF07168_consen 295 AYLKD-W-NGRGWAFLAGLLCGFGNGLQFM 322 (336)
T ss_pred HHhhc-c-CCccHHHHHHHHHhCCceeeec
Confidence 11111 1 1122346899999999998664
No 229
>KOG2816|consensus
Probab=50.34 E-value=92 Score=31.93 Aligned_cols=97 Identities=11% Similarity=0.107 Sum_probs=58.8
Q ss_pred HHHHHhhhcc-cee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhc
Q psy853 195 AALVLSCIFV-PTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLT 270 (314)
Q Consensus 195 ~~~~is~~f~-P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~ 270 (314)
....++.++. |.+ .+|.|+...+|.+.-.+=..-+ +.-..|.++.+.++ +..+...-++..++++.+.
T Consensus 288 ~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~-~~~~~~~~pa~~s~~s~~v------- 359 (463)
T KOG2816|consen 288 ILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVV-VALAGIVFPAIRAFASILV------- 359 (463)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHH-HHhhcchhHHHHhHHHhhc-------
Confidence 3344455544 455 8999996666664332211111 12223444444444 4455666777788877776
Q ss_pred ccchhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853 271 DQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302 (314)
Q Consensus 271 ~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~ 302 (314)
..+..|+.++++..+..++.+++..+-..
T Consensus 360 ---~~~e~g~v~~~is~i~~l~~~~~~~~~~~ 388 (463)
T KOG2816|consen 360 ---SPEEQGKVFGIISGIEGLSGVVSPALYGN 388 (463)
T ss_pred ---ccccccchhhHHHHHHHHhhhhhHHHHHH
Confidence 35678899999999999888877755443
No 230
>PLN02351 cytochromes b561 family protein
Probab=49.65 E-value=60 Score=30.74 Aligned_cols=204 Identities=15% Similarity=0.073 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccccCCcCCCCCCC-CCCCCCCCCCCC---cccccCCCcccccchhhhhhhHHHHHH
Q psy853 83 GIYLSCIVVATIMIALMVDPLSSGISNKGFKDEDGND-LQKPPMPMVSGT---EEEQIPRGKFKMSTKEKWRILKNIGSL 158 (314)
Q Consensus 83 gIy~~c~vlAvl~va~fld~l~~~q~n~g~k~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~~~l~Nvi~l 158 (314)
.+=-.+|++|+++|.+-+-.-+.+..-++..+++..- +=||.-+...+- +|.+=.-|-++. +.|++...+.+..
T Consensus 14 ~~a~~lGl~~~~lvl~W~~~~rgG~aw~~~~~~~~iffn~HP~lMviGfi~L~geAILvYR~~~~--~~k~~K~lH~~Lh 91 (242)
T PLN02351 14 LFARLSGLVVAVLVLYWALFFKSSFLPQSTSQEDLVYAVLHPLLMVIGFILISGEAILVHRWLPG--SRKTKKSVHLWLQ 91 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccCCCCCccceeecccHHHHHHHHHHHHHHHHHHhhcccc--cchHHHHHHHHHH
Confidence 3445678899999999888888876665533333343 568876655443 444433333322 2334567788888
Q ss_pred HHHHHHHHHHHHhHHhhhh-------cccCCCChhhHHHHHHHHHHHHhhhccceeeeccceeeeehhhhhHHHHhhccc
Q psy853 159 SLAFMVQFTAFQGTANLQS-------SINAKEGLGTVSLSAIYAALVLSCIFVPTFRLTVKWTLCVSMMCYLPYIGFQFY 231 (314)
Q Consensus 159 si~F~l~ftAf~~~~~LqS-------Sin~~~~lG~~slailY~~~~is~~f~P~I~lG~K~sLvig~l~Y~iyi~s~~y 231 (314)
++++.+.-.+..+-..-.+ |+|..-|+....+..+-.++.+..++-|...-..|-.+. -|=.|.+..
T Consensus 92 ~~Ali~~vvGl~a~fh~~~~~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~----P~Hv~~Gl~-- 165 (242)
T PLN02351 92 GLALASGVFGIWTKFHGQDGIVANFYSLHSWMGLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVL----PWHVFLGLY-- 165 (242)
T ss_pred HHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHh----HHHHHHHHH--
Confidence 8888777666655111111 111111233333433334444444555543111111111 111111111
Q ss_pred ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhCCCCCC
Q psy853 232 PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVLPDIPE 311 (314)
Q Consensus 232 p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~~~~~~ 311 (314)
.|.+-+++++.|+-+=..+.-... +|+ +.+.|.......|+.- .++|.++.+.. ..||-+.
T Consensus 166 --if~LaiaTa~lGl~EKl~F~~~~~-------~y~---~~~~Ea~lvN~~Glli------v~fG~~Vv~~~-~~p~~kr 226 (242)
T PLN02351 166 --TYGLAVATAETGLLEKLTFLQTKR-------NVS---KHGSESMVVNGLGLGL------ALLSGIVILAA-VLPKYQS 226 (242)
T ss_pred --HHHHHHHHHHHHHHHHHHHhccCC-------ccc---cCCchhhhHHHHHHHH------HHHHHHHHHhh-cCccccC
Confidence 245567888999888777654321 121 2335777888888876 56777777755 5677776
Q ss_pred CC
Q psy853 312 PS 313 (314)
Q Consensus 312 ~~ 313 (314)
||
T Consensus 227 ~~ 228 (242)
T PLN02351 227 HS 228 (242)
T ss_pred CC
Confidence 65
No 231
>KOG0255|consensus
Probab=45.78 E-value=29 Score=34.83 Aligned_cols=86 Identities=10% Similarity=-0.069 Sum_probs=46.4
Q ss_pred eeccceeeeehhhhhHHHHhhcc-ccc-ce--ehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHH
Q psy853 208 RLTVKWTLCVSMMCYLPYIGFQF-YPR-FY--TLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFG 283 (314)
Q Consensus 208 ~lG~K~sLvig~l~Y~iyi~s~~-yp~-~y--~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~g 283 (314)
++|.|+.++.+.+.-.+...... .+. .+ .......+..++.+.-|.....|.+++= .+..+....+
T Consensus 376 ~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~----------pt~~r~~~~~ 445 (521)
T KOG0255|consen 376 EFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELI----------PTVVRNTAVG 445 (521)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------cHHHHHHHHH
Confidence 78999999998886555554432 222 11 3455555555555655655555544432 1333445555
Q ss_pred HHHHHHHhhHHHHHHHHHHh
Q psy853 284 FFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 284 iF~~~~q~s~iiGnLIs~~i 303 (314)
..-.+..++.+++..+..+.
T Consensus 446 ~~~~~~~~~~i~ap~~~~~~ 465 (521)
T KOG0255|consen 446 AISAAARLGSILAPLFPLLL 465 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554433
No 232
>KOG3653|consensus
Probab=45.10 E-value=41 Score=34.97 Aligned_cols=48 Identities=15% Similarity=0.220 Sum_probs=26.0
Q ss_pred hccCCccccCCCC-----------CCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q psy853 53 RSCGSNFCVIGGK-----------GLDNLERPPDSEIYHITGIYLSCIVVATIMIALMV 100 (314)
Q Consensus 53 ~~CGan~C~~~~~-----------~~~~~~rP~~~~i~~l~gIy~~c~vlAvl~va~fl 100 (314)
=+|+-|+|..+.. .+.+++.+..+.++..+-.-++.+++++|++..|+
T Consensus 118 CcCs~~~CN~n~s~~~~~~~~~t~~~~~~~~~~~~~~~~al~~~~~v~~l~~lvi~~~~ 176 (534)
T KOG3653|consen 118 CCCSTDFCNANFSHLPPPGPEGTPSSPDLATNDGEVLIYALIPLLLVSLLAALVILAFL 176 (534)
T ss_pred EecCCCcccCCccccCCCCCCCCCCCCCcccccCceehhhHHHHHHHHHHHHHHHHHHH
Confidence 3688999965431 11222222334444444455556777777776665
No 233
>PLN02680 carbon-monoxide oxygenase
Probab=44.98 E-value=43 Score=31.46 Aligned_cols=191 Identities=13% Similarity=0.126 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCccccCCcCCCCC--CCCCCCCCCCCCCC---cccccCCCcccccchhhhhhhHHHHHH
Q psy853 84 IYLSCIVVATIMIALMVDPLSSGISNKGFKDEDG--NDLQKPPMPMVSGT---EEEQIPRGKFKMSTKEKWRILKNIGSL 158 (314)
Q Consensus 84 Iy~~c~vlAvl~va~fld~l~~~q~n~g~k~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~~~l~Nvi~l 158 (314)
+=-..|++|+++|.+-+=.-+.+..-+ +|+. .-+-||.-+...+- .|..=..+-.+. +.|.++..+.+..
T Consensus 13 ~~~~~g~~~~~lv~~W~~~~rgG~aw~---~~~~~~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~--~k~~~K~iH~~L~ 87 (232)
T PLN02680 13 LVRLLGVIVAALVLTWTVHYRGGLALS---SDNKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVPG--TKNLKKLVHLTLQ 87 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccccc---CCCCcceEechHHHHHHHHHHHHHHHHhccccccc--cchhHHHHHHHHH
Confidence 334568888888888877766665432 1211 23557754433322 122222222211 1223355677777
Q ss_pred HHHHHHHHHHHHhHHhhhh--------cccCCCChhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhh
Q psy853 159 SLAFMVQFTAFQGTANLQS--------SINAKEGLGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF 228 (314)
Q Consensus 159 si~F~l~ftAf~~~~~LqS--------Sin~~~~lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s 228 (314)
.+++.+.-.+..+...... |+|..-|+..+.+..+-..+.+..++.|.. ....+....=-..++.+
T Consensus 88 ~lA~~l~vvGl~avfk~hn~~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~i---- 163 (232)
T PLN02680 88 FLAFCLSLIGVWAALKFHNEKGIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFGIYI---- 163 (232)
T ss_pred HHHHHHHHHHHHHHHHhccccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHH----
Confidence 7777776666554322211 222212344444545555556666677764 12111111111112222
Q ss_pred cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853 229 QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETV 305 (314)
Q Consensus 229 ~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~ 305 (314)
|.+-.++++.|+-+-..+... .++|. +.+.|.......|+.- .++|.++.+.+..
T Consensus 164 ------f~LaiaT~~lG~~Ek~~f~~~-------~~~~~---~~~~e~~lvN~~gl~~------~~fg~~V~~~v~~ 218 (232)
T PLN02680 164 ------YALAVATATTGILEKATFLQS-------NKVIS---RYSTEAMLVNSLGILI------VVLGGFVILAIVT 218 (232)
T ss_pred ------HHHHHHHHHHHHHHHHHHhcc-------CCccC---CCCchhhhHhHHHHHH------HHHHHHHHHhhcc
Confidence 344578899998777655322 11222 2235777777888776 5667777766554
No 234
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=44.66 E-value=1.6e+02 Score=29.35 Aligned_cols=93 Identities=6% Similarity=0.019 Sum_probs=68.6
Q ss_pred eeccceeeeehhhhhHHHHhhcc-----------cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhh
Q psy853 208 RLTVKWTLCVSMMCYLPYIGFQF-----------YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDA 276 (314)
Q Consensus 208 ~lG~K~sLvig~l~Y~iyi~s~~-----------yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~ 276 (314)
...-|+.++++.+..++..+..+ -|+.++.+..+++..+.+.+-|...-..+++.+ .+.
T Consensus 281 ~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lc----------P~G 350 (433)
T PF03092_consen 281 NWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLC----------PKG 350 (433)
T ss_pred CCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHC----------CCC
Confidence 45667777777766655444321 244566677778888888888887777777777 355
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhhhCCCCC
Q psy853 277 IIVRFFGFFFLAWQTAELWGNLISSLETVLPDIP 310 (314)
Q Consensus 277 ~~gr~~giF~~~~q~s~iiGnLIs~~il~~~~~~ 310 (314)
.-|..++++-++.+++..++..++..+....++.
T Consensus 351 ~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt 384 (433)
T PF03092_consen 351 SEGTVYALLASFSNLGSSVSSTLGAFLMELFGVT 384 (433)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 6778899999999999999999999888777764
No 235
>KOG1619|consensus
Probab=44.20 E-value=1.1e+02 Score=28.91 Aligned_cols=124 Identities=15% Similarity=0.138 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccccCCcCCCCCCCCCCCCCCCCCC---CcccccCCCcccccchhhhhhhH----
Q psy853 81 ITGIYLSCIVVATIMIALMVDPLSSGISNKGFKDEDGNDLQKPPMPMVSG---TEEEQIPRGKFKMSTKEKWRILK---- 153 (314)
Q Consensus 81 l~gIy~~c~vlAvl~va~fld~l~~~q~n~g~k~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~~~l~---- 153 (314)
++.+=..+|+++++++.+++-.-+++..-++.- |+.-+-||+-+-..+ ++|.+=.-|-++.. +.|.+++.
T Consensus 19 ~~~~s~l~G~i~v~lvl~W~~~yr~Glaw~~~~--~~~fnlHP~lMviGfI~l~GeAiL~YR~~r~~-~k~~~KliH~~L 95 (245)
T KOG1619|consen 19 IVVVSHLLGFITVVLVLYWVNTYRGGLAWSSSP--NKEFNLHPVLMVIGFIYLQGEAILIYRVFRYT-SKKVSKLIHLGL 95 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccCCCCCc--chhcCcchHHHHHHHHHhccceeeeeehhhhh-hHHHHHHHHHHH
Confidence 343445899999999999999988874333322 333456887655443 34544333332222 22223343
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhh----hcccCCCChhhHHHHHHHHHHHHhhhcccee
Q psy853 154 NIGSLSLAFMVQFTAFQGTANLQ----SSINAKEGLGTVSLSAIYAALVLSCIFVPTF 207 (314)
Q Consensus 154 Nvi~lsi~F~l~ftAf~~~~~Lq----SSin~~~~lG~~slailY~~~~is~~f~P~I 207 (314)
|++.+.++.+-..++|....... .|+|..-|+....+-..-.++.+..++.|.-
T Consensus 96 H~~Alvl~i~gl~avf~~hn~~~i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~ 153 (245)
T KOG1619|consen 96 HIIALVLAIIGLCAVFDSHNLVGIANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPGS 153 (245)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444455555555555444332 2344322333333333333344445555643
No 236
>KOG4332|consensus
Probab=43.95 E-value=36 Score=33.61 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=54.4
Q ss_pred HHHHhhhcccee--eeccceeeeehhhhhHHHHhhcccccceehhhhHHHhccCchhhhchhhh-hHhhh
Q psy853 196 ALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKAT-YLTQV 262 (314)
Q Consensus 196 ~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp~~y~li~as~l~G~gagllW~aqg~-ylt~~ 262 (314)
+.+++..++.++ |.|.|.+.+.=.+.|.+--....-|.+..++.+=++.|++-++++.+--+ |+.++
T Consensus 84 SsmLFGtivgSLaDkqGRKracvtycitYiLsCiTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEH 153 (454)
T KOG4332|consen 84 SSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEH 153 (454)
T ss_pred hHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHh
Confidence 344455556666 99999999998888888888888999999999999999999999988554 55444
No 237
>KOG3626|consensus
Probab=41.63 E-value=75 Score=34.73 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=22.3
Q ss_pred HHHHhhhcccee----eec----cceeeeehhhhhHHHHhhcc
Q psy853 196 ALVLSCIFVPTF----RLT----VKWTLCVSMMCYLPYIGFQF 230 (314)
Q Consensus 196 ~~~is~~f~P~I----~lG----~K~sLvig~l~Y~iyi~s~~ 230 (314)
.++++.++...| ++. .||.++.+.+.+++|+..++
T Consensus 441 ~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~ 483 (735)
T KOG3626|consen 441 AAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFF 483 (735)
T ss_pred hhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHE
Confidence 455566666666 454 56677777777777766544
No 238
>PF13347 MFS_2: MFS/sugar transport protein
Probab=40.37 E-value=1e+02 Score=30.04 Aligned_cols=101 Identities=12% Similarity=-0.003 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHHHHHhhhcc-cee---------eec-cceeeeehhhhhHHHHhhcccccc---------eehhhhHHHh
Q psy853 185 LGTVSLSAIYAALVLSCIFV-PTF---------RLT-VKWTLCVSMMCYLPYIGFQFYPRF---------YTLVPAGILV 244 (314)
Q Consensus 185 lG~~slailY~~~~is~~f~-P~I---------~lG-~K~sLvig~l~Y~iyi~s~~yp~~---------y~li~as~l~ 244 (314)
+.....+++....-+-..+. |.+ |+| .|.-+++|.+..++.....+++.+ ..+++..++.
T Consensus 34 l~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~ 113 (428)
T PF13347_consen 34 LSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILF 113 (428)
T ss_pred CCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHH
Confidence 34455555555555555444 433 577 455666787877776666665411 1135555666
Q ss_pred ccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHH
Q psy853 245 GIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAEL 294 (314)
Q Consensus 245 G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~i 294 (314)
.++.....+...+...+.+. ++++|.+..+.-......+.+
T Consensus 114 ~~~~t~~~i~~~al~~~lt~---------~~~~R~~l~~~~~~~~~~g~~ 154 (428)
T PF13347_consen 114 DIAYTFVQIPYNALIPELTP---------DPDERTRLSSWRMIFSMIGSL 154 (428)
T ss_pred HHhhhhccCchhhcCccccc---------cHhhhhhHHHHHHHHHHHHHH
Confidence 77777777777776666652 234566665554444444443
No 239
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=40.30 E-value=2.1e+02 Score=29.20 Aligned_cols=149 Identities=13% Similarity=0.113 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhcccCCCChhhHHHHHHHHHHHHhhh----cccee--eeccceeeeehhh----hhH
Q psy853 154 NIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCI----FVPTF--RLTVKWTLCVSMM----CYL 223 (314)
Q Consensus 154 Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~lG~~slailY~~~~is~~----f~P~I--~lG~K~sLvig~l----~Y~ 223 (314)
.++.-|++.-++|.--.+..++..+.-...|+...-+++.-+..+++.+ ..|.+ ++|.-++=.+|.. |-.
T Consensus 259 ~vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~ 338 (432)
T PF06963_consen 259 PVFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLA 338 (432)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 5677777776666655554444444222224455555666666555554 45555 7887766666554 444
Q ss_pred HHHhhcccccce--ehhhhHHHhccCchh--hhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy853 224 PYIGFQFYPRFY--TLVPAGILVGIGAAP--MWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLI 299 (314)
Q Consensus 224 iyi~s~~yp~~y--~li~as~l~G~gagl--lW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLI 299 (314)
+=+++++.|... ..-....+.|+..+= ||.---.. ++.= .+.-+|+.||..+|.-.++.++-.++--+.
T Consensus 339 ~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~-~qi~------Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 339 LCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAV-TQIM------QENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHH-HHhh------cccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 555566666533 222233344444443 66443221 1111 112247789999999988877766654443
Q ss_pred HHHhhhCCCCCCC
Q psy853 300 SSLETVLPDIPEP 312 (314)
Q Consensus 300 s~~il~~~~~~~~ 312 (314)
....+|-++|
T Consensus 412 ---~ii~~~P~~F 421 (432)
T PF06963_consen 412 ---TIIFPRPSQF 421 (432)
T ss_pred ---HhccCChHhc
Confidence 2244554444
No 240
>KOG0252|consensus
Probab=39.07 E-value=1.3e+02 Score=31.54 Aligned_cols=78 Identities=14% Similarity=0.037 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhhhhcccC------CC--C----hhhHHHHHHHHHHHH-hhhcccee--eeccceee
Q psy853 151 ILKNIGSLSLAFMVQFTAFQGTANLQSSINA------KE--G----LGTVSLSAIYAALVL-SCIFVPTF--RLTVKWTL 215 (314)
Q Consensus 151 ~l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~------~~--~----lG~~slailY~~~~i-s~~f~P~I--~lG~K~sL 215 (314)
.-+..+..+..-|+.=.+|.+..-.|+-|-. .. . .....+.++=....+ +-+|.-.+ ++|.||..
T Consensus 302 hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq 381 (538)
T KOG0252|consen 302 HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQ 381 (538)
T ss_pred HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHH
Confidence 3456666666767777777776666664321 00 0 011222222222222 33444444 99999999
Q ss_pred eehhhhhHHHHhh
Q psy853 216 CVSMMCYLPYIGF 228 (314)
Q Consensus 216 vig~l~Y~iyi~s 228 (314)
+-|-+++++|.+.
T Consensus 382 ~~GF~~~~i~~~~ 394 (538)
T KOG0252|consen 382 LMGFFIMTIFFFV 394 (538)
T ss_pred HhhHHHHHHHHHH
Confidence 9999988877654
No 241
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=38.22 E-value=1e+02 Score=31.82 Aligned_cols=79 Identities=10% Similarity=0.113 Sum_probs=53.3
Q ss_pred eeehhhhhHHHHh-hccc-----ccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHH
Q psy853 215 LCVSMMCYLPYIG-FQFY-----PRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLA 288 (314)
Q Consensus 215 Lvig~l~Y~iyi~-s~~y-----p~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~ 288 (314)
+++.+++|.+... +... ...+.++.+.++.++|+-++=+..-+.+++++ .++.++++.|.||..
T Consensus 352 ~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~la----------P~~~~g~~mg~w~l~ 421 (493)
T PRK15462 352 LGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIE----------IPGVTGVLTGIYMLL 421 (493)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhC----------hHHHHHHHHHHHHHH
Confidence 4555667755543 3322 12344677788888888888887788888887 578999999999764
Q ss_pred H-HhhHHHHHHHHHHh
Q psy853 289 W-QTAELWGNLISSLE 303 (314)
Q Consensus 289 ~-q~s~iiGnLIs~~i 303 (314)
. ..+..+++.+....
T Consensus 422 ~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 422 SGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3 56666666655544
No 242
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=38.15 E-value=1.6e+02 Score=30.13 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhhhhcccC-CCChhhHHHH-HHHHHHHHhhhccc---ee--eeccceeeeehhhhhHH
Q psy853 152 LKNIGSLSLAFMVQFTAFQGTANLQSSINA-KEGLGTVSLS-AIYAALVLSCIFVP---TF--RLTVKWTLCVSMMCYLP 224 (314)
Q Consensus 152 l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~-~~~lG~~sla-ilY~~~~is~~f~P---~I--~lG~K~sLvig~l~Y~i 224 (314)
-++++.+++-.+..|++|.+..+.-..... +-++.....+ .....-.+++++-| .+ |+|.++.+.+....-++
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~ 296 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMAL 296 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHH
Confidence 458899999999999999998876554311 1122222221 22222334444444 33 88866666555444443
Q ss_pred HH
Q psy853 225 YI 226 (314)
Q Consensus 225 yi 226 (314)
..
T Consensus 297 ~~ 298 (417)
T COG2223 297 AA 298 (417)
T ss_pred HH
Confidence 33
No 243
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=38.14 E-value=66 Score=23.17 Aligned_cols=20 Identities=10% Similarity=0.248 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy853 79 YHITGIYLSCIVVATIMIAL 98 (314)
Q Consensus 79 ~~l~gIy~~c~vlAvl~va~ 98 (314)
+.|.+|+..-|+|.++++-+
T Consensus 4 ~~iV~i~iv~~lLg~~I~~~ 23 (50)
T PF12606_consen 4 FLIVSIFIVMGLLGLSICTT 23 (50)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888887754
No 244
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=37.97 E-value=63 Score=32.50 Aligned_cols=107 Identities=10% Similarity=-0.032 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhhhcccee-eec-----cceeeeehhhhhH-HHHhhccc-ccceeh-hhhHHHhccCchhhhchhhhhHh
Q psy853 190 LSAIYAALVLSCIFVPTF-RLT-----VKWTLCVSMMCYL-PYIGFQFY-PRFYTL-VPAGILVGIGAAPMWAAKATYLT 260 (314)
Q Consensus 190 lailY~~~~is~~f~P~I-~lG-----~K~sLvig~l~Y~-iyi~s~~y-p~~y~l-i~as~l~G~gagllW~aqg~ylt 260 (314)
.++++.-+++-.+.+|.. +++ .||-|+++.+... +-.+..-. ++.... ...-.+.+++.+.-.++..++..
T Consensus 67 ~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~ 146 (468)
T TIGR00788 67 VGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYS 146 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 456666777777778877 665 6888888876652 22111111 222222 22456788888888888777777
Q ss_pred hhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 261 QVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 261 ~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
+..+ . +.+..+.....+|.....|.++|.+++..+.
T Consensus 147 e~~~--~------~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~ 182 (468)
T TIGR00788 147 ERIR--E------SPSAGPSLVSWMWGASATGGLISSLLGGPLL 182 (468)
T ss_pred hhhh--c------CCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 7653 0 1122334555666666677777766665443
No 245
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=35.90 E-value=89 Score=31.93 Aligned_cols=76 Identities=12% Similarity=0.134 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHhhhcccee--eeccceeeeehh-hhhHHHHhhcccccceehhhhHHHhccCchhhhchhhhhHhhh
Q psy853 186 GTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSM-MCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQV 262 (314)
Q Consensus 186 G~~slailY~~~~is~~f~P~I--~lG~K~sLvig~-l~Y~iyi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~ 262 (314)
+.+.++...+.++++=|.+..+ ++.+.+.+.+.+ ..+.+..+.-+-.. ...+.+-.++|+-.+++|+.--+--++.
T Consensus 274 aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g-~v~~~~l~~ig~F~simfPTIfslal~~ 352 (422)
T COG0738 274 AAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGG-VVALYALFLIGLFNSIMFPTIFSLALKN 352 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 3444555555555555555444 666555555544 55555555444433 4446677888999999998765554444
No 246
>KOG1582|consensus
Probab=32.86 E-value=1.6e+02 Score=28.93 Aligned_cols=68 Identities=9% Similarity=-0.005 Sum_probs=43.3
Q ss_pred cccccCCCcccccchhhhhhhHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCChhhHHHHHHHHHHHHh
Q psy853 132 EEEQIPRGKFKMSTKEKWRILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLS 200 (314)
Q Consensus 132 ~~~~~~~~~~~~~~~~k~~~l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~lG~~slailY~~~~is 200 (314)
+|+..|.+-+-++.++|.| +.++++++.++|+.|-.|--++-+.=.......-|-+-..+-++.+...
T Consensus 22 ~e~p~ki~llg~~ls~kpk-w~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~ 89 (367)
T KOG1582|consen 22 EEQPSKIKLLGFNLSDKPK-WTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGF 89 (367)
T ss_pred ccCCcceeEEeeccccCch-hhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhh
Confidence 3444445566677777765 7799999999999999888777665444333334544444444444333
No 247
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=31.85 E-value=1.2e+02 Score=31.16 Aligned_cols=141 Identities=11% Similarity=0.085 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccccCCcCCCCCCCCCCCCCCCCCCCccc-ccCCCcccccchhh--hhhhH--HHH
Q psy853 82 TGIYLSCIVVATIMIALMVDPLSSGISNKGFKDEDGNDLQKPPMPMVSGTEEE-QIPRGKFKMSTKEK--WRILK--NIG 156 (314)
Q Consensus 82 ~gIy~~c~vlAvl~va~fld~l~~~q~n~g~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k--~~~l~--Nvi 156 (314)
-+-|..-+++|+++-.+++.-++|.-++.| =||.|+.-+-..|+ .+...+..++..|. ..+++ .++
T Consensus 185 ~~~f~~pgiiaiival~~~~~~rd~Pqs~G---------LP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW 255 (448)
T COG2271 185 RAAFYFPGIIAIIVALILLFLLRDRPQSEG---------LPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIW 255 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCccccC---------CCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHH
Confidence 345667778888777777776666432222 23443332222222 11111111333331 23444 577
Q ss_pred HHHHHHHHHHHHHHhHHhhhhc-ccCCCChhhHHHHHHHHHHHHhhhcccee-------ee-ccceeeeehhhhhHHHHh
Q psy853 157 SLSLAFMVQFTAFQGTANLQSS-INAKEGLGTVSLSAIYAALVLSCIFVPTF-------RL-TVKWTLCVSMMCYLPYIG 227 (314)
Q Consensus 157 ~lsi~F~l~ftAf~~~~~LqSS-in~~~~lG~~slailY~~~~is~~f~P~I-------~l-G~K~sLvig~l~Y~iyi~ 227 (314)
+++++-+++|-.=.+...=..- +.+..|.........|..|=++.+..+.+ .+ |.|.-+.+....-.....
T Consensus 256 ~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~ 335 (448)
T COG2271 256 LLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASL 335 (448)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 7888877777665544433211 12334555566666677776666655554 45 666665554444333333
Q ss_pred hccc
Q psy853 228 FQFY 231 (314)
Q Consensus 228 s~~y 231 (314)
..++
T Consensus 336 ~~~w 339 (448)
T COG2271 336 VLYW 339 (448)
T ss_pred HHHH
Confidence 3333
No 248
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=31.24 E-value=2.1e+02 Score=23.59 Aligned_cols=50 Identities=18% Similarity=0.297 Sum_probs=22.7
Q ss_pred hccCCccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy853 53 RSCGSNFCVIGGKGLDNLERPPDSEIYHITGIYLSCIVVATIMIALMVDPLSS 105 (314)
Q Consensus 53 ~~CGan~C~~~~~~~~~~~rP~~~~i~~l~gIy~~c~vlAvl~va~fld~l~~ 105 (314)
.+|--+.|..+.....+.+.=.....++ +-+.-+++|+++.++---++++
T Consensus 30 ~~CTDteC~~d~~g~p~~~~~~~~~~~~---~~~~w~~~A~~ly~~RP~s~R~ 79 (103)
T PF11027_consen 30 NYCTDTECLQDLPGLPQSSGDGGNSMFM---MMMLWMVLAMALYLLRPSSLRS 79 (103)
T ss_pred CccCcchhhccCCCCCCcCCCCCccHHH---HHHHHHHHHHHHHHcCchhhcC
Confidence 6788888954332211111101122222 2244555666655554444444
No 249
>KOG4255|consensus
Probab=30.63 E-value=5.9e+02 Score=25.86 Aligned_cols=79 Identities=9% Similarity=-0.070 Sum_probs=42.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCcCCCCCCCCCCCCCCCCCC--CcccccCCCcccccchhhhhh
Q psy853 74 PDSEIYHITGIYLSCIVVATIMIALMVDPLSSGISNKGFKDEDGNDLQKPPMPMVSG--TEEEQIPRGKFKMSTKEKWRI 151 (314)
Q Consensus 74 ~~~~i~~l~gIy~~c~vlAvl~va~fld~l~~~q~n~g~k~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~ 151 (314)
+.+.-+.++-+++.|.+.|-+..---.- .-..+.++.++++..++-+..++++|. +.++|.+.+..... +||-..
T Consensus 188 s~s~FFl~l~~~~~~alaAF~vL~r~~~--~~~~s~~~~~~p~~~l~si~~~ee~~~~~~~~~dsSq~~g~~~-e~~A~~ 264 (439)
T KOG4255|consen 188 SVSTFFLALFAFTCAALAAFFVLYRLGA--HWPSSTTGELEPQLQLGSIGAEEETDESSPLQEDSSQAAGTIP-EPKAAA 264 (439)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCCCCCCCccccCCCCcccccccCCCCCCCcccCCCccC-CCcccc
Confidence 4466777777887776666543322222 222357788888877776666555522 22333333333333 556544
Q ss_pred hHHH
Q psy853 152 LKNI 155 (314)
Q Consensus 152 l~Nv 155 (314)
+...
T Consensus 265 ~~~A 268 (439)
T KOG4255|consen 265 LCSA 268 (439)
T ss_pred ccHH
Confidence 4433
No 250
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=30.62 E-value=86 Score=32.09 Aligned_cols=32 Identities=25% Similarity=0.100 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhCCCC
Q psy853 278 IVRFFGFFFLAWQTAELWGNLISSLETVLPDI 309 (314)
Q Consensus 278 ~gr~~giF~~~~q~s~iiGnLIs~~il~~~~~ 309 (314)
++|..+.-|++-..|.++--++...+...++-
T Consensus 186 ~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~ 217 (477)
T PF11700_consen 186 RGRVSGLGWALGYIGGLVALLISLLLVISPGS 217 (477)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 48999999999998888888888777666553
No 251
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=29.79 E-value=3e+02 Score=25.45 Aligned_cols=59 Identities=19% Similarity=0.406 Sum_probs=35.3
Q ss_pred eehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhCCCCCCC
Q psy853 235 YTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVLPDIPEP 312 (314)
Q Consensus 235 y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~~~~~~~ 312 (314)
|.+-.++++.|+-.=..+.-.. ++ +.+.|...+.+.|+.- .++|.++.+ +...||-..|
T Consensus 144 fvLaiaT~~lGl~ek~~f~~~~-----~~-------~~~~e~~l~N~~gl~~------~~fg~~V~~-~~~~~~~kr~ 202 (214)
T cd08764 144 FVLAVATALLGITEKAFFSLNK-----YS-------NLPAEGVLGNFIGIVL------VIFGGLVVY-LVTEPDYKRI 202 (214)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-----cc-------cCChhHHHHHHHHHHH------HHHHHHHHH-hccCcccCCC
Confidence 3445788888887765554321 12 2235777888888876 456666666 4445554443
No 252
>KOG1055|consensus
Probab=29.14 E-value=59 Score=35.74 Aligned_cols=100 Identities=22% Similarity=0.259 Sum_probs=60.7
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCcCCCCCCCCCCCCCCCCCCCcccccCCCcccccc-hhhh
Q psy853 71 ERPPDSEIYHITGIYLSCIVVATIMIALMVDPLSSGISNKGFKDEDGNDLQKPPMPMVSGTEEEQIPRGKFKMST-KEKW 149 (314)
Q Consensus 71 ~rP~~~~i~~l~gIy~~c~vlAvl~va~fld~l~~~q~n~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~ 149 (314)
+.+.+.++|++.|+.++-= +.+|++=.++||+.|. .+-+--+ +..+ ++|-+....--++ +++.
T Consensus 574 K~~e~~Kl~~ivg~Ll~iD-~~il~~WqivdPl~rt--~ekl~~e----------p~~~---~~Dv~I~PelE~Ces~~~ 637 (865)
T KOG1055|consen 574 KVIEDSKLYVIVGLLLAID-VLILAIWQIVDPLHRT--EEKLSKE----------PPKN---DRDVSIIPELEHCESEHM 637 (865)
T ss_pred cccccceeEeehhHHHHhH-HHHhhhhhccChhhhh--hhhcCCC----------CCCc---ccccccchhhhhhccccc
Confidence 4566779999999988754 4678888999999996 2222222 1111 3333333333333 4556
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHhh---hhcccCCCChh
Q psy853 150 RILKNIGSLSLAFMVQFTAFQGTANL---QSSINAKEGLG 186 (314)
Q Consensus 150 ~~l~Nvi~lsi~F~l~ftAf~~~~~L---qSSin~~~~lG 186 (314)
.++.-+++-.=+.+++|+.|++-.-= ...||+..++|
T Consensus 638 ~iwlgivya~KglllvfG~FLA~ETR~V~i~~INDskyiG 677 (865)
T KOG1055|consen 638 TIWLGIVYAYKGLLLLFGCFLAWETRNVSIPAINDSKYIG 677 (865)
T ss_pred chhhhhhhhhhhHHHHHhHHhhhhccccchhhhccccccc
Confidence 67777777777777777777764321 12356555555
No 253
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=28.55 E-value=3.4e+02 Score=25.72 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=8.7
Q ss_pred eeccceeeeehh
Q psy853 208 RLTVKWTLCVSM 219 (314)
Q Consensus 208 ~lG~K~sLvig~ 219 (314)
++|.|+..+++.
T Consensus 65 ~~g~r~~~i~~~ 76 (390)
T TIGR02718 65 RLGRRRSWVLPM 76 (390)
T ss_pred cCCcchhHHHHH
Confidence 589888865555
No 254
>PF12832 MFS_1_like: MFS_1 like family
Probab=28.43 E-value=51 Score=25.15 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhcccCCCChhhHHHHHHHHHHHHhhhcccee------eeccceeeeeh
Q psy853 156 GSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF------RLTVKWTLCVS 218 (314)
Q Consensus 156 i~lsi~F~l~ftAf~~~~~LqSSin~~~~lG~~slailY~~~~is~~f~P~I------~lG~K~sLvig 218 (314)
..+.+..++.|+++....-..+-.-.+.++...-..++.+...+..+++|++ +.+.+..+...
T Consensus 3 ~~lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~ 71 (77)
T PF12832_consen 3 LPLKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLG 71 (77)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHH
Confidence 4566677777777776655555433345666777788888888888877776 56655444433
No 255
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=27.12 E-value=2.8e+02 Score=28.75 Aligned_cols=125 Identities=17% Similarity=0.190 Sum_probs=57.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCcCCCCCCCCCCCCCCCCCCCcccccCCCcccccchh------h
Q psy853 75 DSEIYHITGIYLSCIVVATIMIALMVDPLSSGISNKGFKDEDGNDLQKPPMPMVSGTEEEQIPRGKFKMSTKE------K 148 (314)
Q Consensus 75 ~~~i~~l~gIy~~c~vlAvl~va~fld~l~~~q~n~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------k 148 (314)
+..+..++++.+.||++.+++.-..=+.. -+++ ... ..+...+.+|.|++..| |
T Consensus 219 ~~~l~~l~~~v~~~g~~i~~~~~~~~~~v--------l~~~-------~~~-----~~~~~~kk~k~k~s~~es~k~l~k 278 (491)
T PF03219_consen 219 ELSLNSLMGIVLILGIVIILLYRYMNKNV--------LTDP-------RFY-----PSAKKKKKKKPKMSLKESFKLLLK 278 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------cCcc-------ccc-----hhhhcccccCCCccHHHHHHHHHh
Confidence 34555667777777776666554332222 1111 000 12333444555666655 3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHHhhh-hcccCC-----CChhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhh
Q psy853 149 WRILKNIGSLSLAFMVQFTAFQGTANLQ-SSINAK-----EGLGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMM 220 (314)
Q Consensus 149 ~~~l~Nvi~lsi~F~l~ftAf~~~~~Lq-SSin~~-----~~lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l 220 (314)
.|-++++..+.+++.+.-.-.....--+ .....+ ..+|.....+--.+..+. ++++.+ ++|-+.+..+.-+
T Consensus 279 S~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~-~l~~~iir~~GW~~~AlitPi 357 (491)
T PF03219_consen 279 SKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMM-FLSSNIIRRFGWRTAALITPI 357 (491)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhHH
Confidence 4556666666665544433322211111 011111 125555444322222222 555655 7887777666443
No 256
>KOG3374|consensus
Probab=26.88 E-value=35 Score=30.99 Aligned_cols=28 Identities=29% Similarity=0.278 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCCCCCccccCCcCCCCCC
Q psy853 88 CIVVATIMIALMVDPLSSGISNKGFKDEDGN 118 (314)
Q Consensus 88 c~vlAvl~va~fld~l~~~q~n~g~k~~~~~ 118 (314)
.-++|.++.+|++||.+.. .++|+|.-+
T Consensus 6 ~llla~il~~~~~~p~~g~---~~r~~~~~i 33 (210)
T KOG3374|consen 6 SLLLALILALVSLDPSSGY---SRRKDERII 33 (210)
T ss_pred HHHHHHHHHHHeecccccc---cccchhhhh
Confidence 5679999999999999985 455665433
No 257
>KOG3386|consensus
Probab=24.73 E-value=1e+02 Score=27.06 Aligned_cols=70 Identities=14% Similarity=0.146 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCCCCccccCCcCCCCCCCCCCCCCCCCCCCcccccCCCcccc--cchhhhhhhHHHHHHHHHHHHHHH
Q psy853 90 VVATIMIALMVDPLSSGISNKGFKDEDGNDLQKPPMPMVSGTEEEQIPRGKFKM--STKEKWRILKNIGSLSLAFMVQFT 167 (314)
Q Consensus 90 vlAvl~va~fld~l~~~q~n~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~k~~~l~Nvi~lsi~F~l~ft 167 (314)
.+++.++|++++-||+.++..-+++-.+..+++ +.+.....+.++ ....=.+.+..++.++++++++..
T Consensus 45 ~i~iflla~l~E~Lk~~r~~~~~~~~~~~~~~~---------~~~~~~~~~s~~~~~~~h~~qt~l~~~Q~~~sY~LMLi 115 (155)
T KOG3386|consen 45 CIAIFLLAVLYEALKFGREKLFRWQQLRQPTGH---------GHEIPLSGPSKLLNSASHLIQTLLYVVQLGFSYLLMLI 115 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC---------CccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888899999765544444433332222 111111111111 111112567777777777766554
Q ss_pred H
Q psy853 168 A 168 (314)
Q Consensus 168 A 168 (314)
.
T Consensus 116 f 116 (155)
T KOG3386|consen 116 F 116 (155)
T ss_pred H
Confidence 3
No 258
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=24.59 E-value=69 Score=30.79 Aligned_cols=61 Identities=13% Similarity=0.209 Sum_probs=43.7
Q ss_pred eehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy853 235 YTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302 (314)
Q Consensus 235 y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~ 302 (314)
..++.+=++.++|.|.+=+.-...+.+-= ++.+++.+.+++.+|+...+.|..+|..+...
T Consensus 34 ~~~~~gL~lia~G~G~~K~ni~~~~~dq~-------~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~ 94 (372)
T PF00854_consen 34 GLFYIGLALIAVGTGGIKPNISPFGADQY-------DEDDDSRRDSFFNWFYWGINIGSLFSPTLVPY 94 (372)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHCS-------STTTTTHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHhccccccccHHHHHHHHh-------cccchhhhhhhHHHHHHHHhhhhHhhcccchh
Confidence 55677778888888888777777664432 11236788899999999999888887655433
No 259
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=23.70 E-value=1.7e+02 Score=23.37 Aligned_cols=38 Identities=16% Similarity=0.470 Sum_probs=22.8
Q ss_pred CCchhHHHHH--HHHHHHHHHHHHHHHHhcCCCCCccccCC
Q psy853 73 PPDSEIYHIT--GIYLSCIVVATIMIALMVDPLSSGISNKG 111 (314)
Q Consensus 73 P~~~~i~~l~--gIy~~c~vlAvl~va~fld~l~~~q~n~g 111 (314)
|+++..=+|+ |.|+|..+==+++.|+-+ |.+..++++.
T Consensus 13 ~Eet~~e~llRYGLf~GAIFQliCilAiI~-~~~~s~~~e~ 52 (85)
T PF06783_consen 13 PEETFFENLLRYGLFVGAIFQLICILAIIL-PISKSHEQES 52 (85)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHheee-ecCCccCCCC
Confidence 4555444444 899998876666666555 4444444443
No 260
>PF10808 DUF2542: Protein of unknown function (DUF2542) ; InterPro: IPR020155 This entry represents transmembrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=23.35 E-value=66 Score=25.20 Aligned_cols=24 Identities=17% Similarity=0.377 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhc
Q psy853 77 EIYHITGIYLSCIVVATIMIALMV 100 (314)
Q Consensus 77 ~i~~l~gIy~~c~vlAvl~va~fl 100 (314)
+-.--+..|+|||+++..++.-++
T Consensus 53 ~ywsYi~~Y~G~gil~~gm~Iyll 76 (79)
T PF10808_consen 53 QYWSYIFAYFGCGILSLGMIIYLL 76 (79)
T ss_pred hhHHHHHHHHHHHHHHHHHhheeE
Confidence 444556789999999998877654
No 261
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=22.73 E-value=3.5e+02 Score=28.65 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=40.3
Q ss_pred hhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhCCC
Q psy853 237 LVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVLPD 308 (314)
Q Consensus 237 li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~~~ 308 (314)
++...++.-+..-.+.+++.++-++.| ++..=|.|.-..-.+.++|.-+-. +++|++.|
T Consensus 408 vI~~~~l~sf~stvmFVai~AFharIS----------DP~IGGTYMTLLNTvSNLGGtWP~---~~vL~lVD 466 (544)
T PF13000_consen 408 VIIQHVLSSFMSTVMFVAIMAFHARIS----------DPAIGGTYMTLLNTVSNLGGTWPR---TFVLWLVD 466 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc----------CcccchHHHHHHHHHHhcCCCchH---HHHHHHhh
Confidence 366678888888999999999988877 455666777777655555544433 44444444
No 262
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=22.64 E-value=1.4e+02 Score=30.27 Aligned_cols=33 Identities=6% Similarity=-0.021 Sum_probs=29.5
Q ss_pred chhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy853 273 AVDAIIVRFFGFFFLAWQTAELWGNLISSLETV 305 (314)
Q Consensus 273 ~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~ 305 (314)
.+|++|+|..++-|.+.-.|.+++.++....|.
T Consensus 118 ~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~ 150 (403)
T PF03209_consen 118 APEERRPRVVAIVWVMLIVGIIVSAIVFGRLLD 150 (403)
T ss_pred CCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 368999999999999999999999998887664
No 263
>KOG1734|consensus
Probab=22.16 E-value=1.5e+02 Score=28.82 Aligned_cols=94 Identities=19% Similarity=0.260 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhHHhhhhcccCC-CChhhHHHHHHHHHHHHhhhccceeeeccceeeeehhhhhHHHHhhcccccceeh
Q psy853 159 SLAFMVQFTAFQGTANLQSSINAK-EGLGTVSLSAIYAALVLSCIFVPTFRLTVKWTLCVSMMCYLPYIGFQFYPRFYTL 237 (314)
Q Consensus 159 si~F~l~ftAf~~~~~LqSSin~~-~~lG~~slailY~~~~is~~f~P~I~lG~K~sLvig~l~Y~iyi~s~~yp~~y~l 237 (314)
....|+.|+||.++-.+...+... +-+-|-..-.+| |.+-..|.++|..-+.+.+=-+..+-
T Consensus 108 ~WlmF~~~tafi~~ka~rkp~~g~tpRlVYkwFl~ly-----------------klSy~~g~vGyl~im~~~~g~n~~F~ 170 (328)
T KOG1734|consen 108 CWLMFCGFTAFITLKALRKPISGDTPRLVYKWFLFLY-----------------KLSYLLGVVGYLAIMFAQFGLNFTFF 170 (328)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHhceeeEEe
Confidence 345667788888887776655432 223333333333 33344566677776666664444444
Q ss_pred hhhHHHhccCchhhhchhhhhHhhhhhhhhhhcc
Q psy853 238 VPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTD 271 (314)
Q Consensus 238 i~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~ 271 (314)
++.--..++|.+.+. .|-|....++..++.++
T Consensus 171 ~~~~~~md~gi~~lf--yglYyGvlgRdfa~ics 202 (328)
T KOG1734|consen 171 YLKTTYMDFGISFLF--YGLYYGVLGRDFAEICS 202 (328)
T ss_pred ecchhHhhhhHHHHH--HHHHHHhhhhHHHHHHH
Confidence 555555666665555 66776666655555443
No 264
>KOG2262|consensus
Probab=21.11 E-value=9e+02 Score=26.59 Aligned_cols=94 Identities=23% Similarity=0.276 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCChhhHHHHHHHHHHHHhhhcc---cee--eeccceeee---------
Q psy853 151 ILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFV---PTF--RLTVKWTLC--------- 216 (314)
Q Consensus 151 ~l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~lG~~slailY~~~~is~~f~---P~I--~lG~K~sLv--------- 216 (314)
..+..+.|++++..++++.+....+... .+--.+..+.-+.+-++-+.+ |.= ++|.||..-
T Consensus 71 ~TfRmW~Lg~~~~iv~a~vNqFF~~R~~-----~lsis~i~aQi~~~PlGklma~~lP~~~~~~~~~~~fslNPGPFn~K 145 (761)
T KOG2262|consen 71 LTFRMWFLGLISCIVLAFVNQFFSYRYP-----PLSISAIVAQIATYPLGKLMAKTLPTWKFGLGGRWSFSLNPGPFNVK 145 (761)
T ss_pred HhHHHHHHHHHHHHHHHHHhhhhcccCC-----CeehHHHHHHHHHHhHHHHHHHhCCceeeecCcceEEEeCCCCCcch
Confidence 3667889999988888888866555321 111112222223334444444 322 446776432
Q ss_pred -----------ehhhhhHHHHhhc---cccc------ceehhhhHHHhccCch
Q psy853 217 -----------VSMMCYLPYIGFQ---FYPR------FYTLVPAGILVGIGAA 249 (314)
Q Consensus 217 -----------ig~l~Y~iyi~s~---~yp~------~y~li~as~l~G~gag 249 (314)
-++..|+.++..- +|.+ ...+...+=++|+|-+
T Consensus 146 EHvlitIfan~~sg~aYat~Ii~~~k~fY~~~l~f~~~~ll~lttQ~lGyGwA 198 (761)
T KOG2262|consen 146 EHVLITIFANIGSGTAYATHIITAQKAFYKRNLSFGYAFLLVLTTQLLGYGWA 198 (761)
T ss_pred heeeeehhhhccCcchhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhcccHh
Confidence 2344677777662 3332 2456778888888854
No 265
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=20.94 E-value=5.4e+02 Score=26.64 Aligned_cols=58 Identities=10% Similarity=0.038 Sum_probs=41.7
Q ss_pred eec-cceeeeehhhhhHHHHhhccccc-------ceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853 208 RLT-VKWTLCVSMMCYLPYIGFQFYPR-------FYTLVPAGILVGIGAAPMWAAKATYLTQVGAV 265 (314)
Q Consensus 208 ~lG-~K~sLvig~l~Y~iyi~s~~yp~-------~y~li~as~l~G~gagllW~aqg~ylt~~s~~ 265 (314)
|.| .|.=+.+|++-+++.....|++. ....+..-++.|++.++.-+..++..++..+.
T Consensus 78 r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d 143 (467)
T COG2211 78 RWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQD 143 (467)
T ss_pred ccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCC
Confidence 566 45567788888887776666543 23456777888899999888888887777653
Done!