Query psy853
Match_columns 314
No_of_seqs 189 out of 666
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 21:17:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy853.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/853hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 98.4 3.1E-07 1.1E-11 86.0 6.0 144 151-304 24-177 (438)
2 1pw4_A Glycerol-3-phosphate tr 98.1 2.8E-06 9.4E-11 79.7 6.8 142 152-304 27-179 (451)
3 1pw4_A Glycerol-3-phosphate tr 98.0 7.2E-05 2.5E-09 69.9 13.3 143 153-305 252-408 (451)
4 2gfp_A EMRD, multidrug resista 97.6 8.4E-05 2.9E-09 68.3 6.3 105 189-303 40-147 (375)
5 4aps_A DI-OR tripeptide H+ sym 97.4 0.00017 5.8E-09 68.8 6.5 107 190-304 60-170 (491)
6 4gc0_A D-xylose-proton symport 97.2 0.00067 2.3E-08 64.5 7.8 106 193-308 64-190 (491)
7 2xut_A Proton/peptide symporte 97.1 0.00061 2.1E-08 65.6 5.9 103 190-302 60-170 (524)
8 3o7q_A L-fucose-proton symport 96.8 0.0047 1.6E-07 57.4 9.1 102 190-303 301-404 (438)
9 2gfp_A EMRD, multidrug resista 96.1 0.0028 9.7E-08 58.0 3.4 137 154-301 200-347 (375)
10 4aps_A DI-OR tripeptide H+ sym 95.4 0.008 2.7E-07 57.1 3.5 61 233-303 385-445 (491)
11 2cfq_A Lactose permease; trans 95.0 0.043 1.5E-06 51.6 7.2 97 195-301 270-370 (417)
12 2xut_A Proton/peptide symporte 93.2 0.022 7.6E-07 54.6 1.1 61 233-303 404-464 (524)
13 2cfq_A Lactose permease; trans 90.2 0.21 7E-06 46.9 4.0 73 190-262 49-128 (417)
14 4gc0_A D-xylose-proton symport 85.8 0.023 7.9E-07 53.7 -5.7 72 155-226 279-356 (491)
15 1q90_R Cytochrome B6-F complex 29.9 82 0.0028 21.5 4.4 36 71-106 5-45 (49)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.38 E-value=3.1e-07 Score=86.02 Aligned_cols=144 Identities=11% Similarity=0.035 Sum_probs=101.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCChhhHHH----HHHHHHHHHhhhcccee--eeccceeeeehhhhhHH
Q psy853 151 ILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSL----SAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLP 224 (314)
Q Consensus 151 ~l~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~~~lG~~sl----ailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~i 224 (314)
..+.++.+.+.+++....+.....+...+.++-++..... ++.+....++.++...+ ++|.|+.++++.+.+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~ 103 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence 3556666776766655544433333332222112222223 33444444555555555 99999999999998877
Q ss_pred HHhhc----ccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy853 225 YIGFQ----FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLIS 300 (314)
Q Consensus 225 yi~s~----~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs 300 (314)
-.... +.++.+.++.+-++.|++.+..+++..+++.+.. .++.+++..+++.....++.++|.++.
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~~~~ 173 (438)
T 3o7q_A 104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG----------PESSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------CSTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHc----------CchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554 4567788899999999999999999999998886 467789999999999999999999988
Q ss_pred HHhh
Q psy853 301 SLET 304 (314)
Q Consensus 301 ~~il 304 (314)
..+.
T Consensus 174 ~~l~ 177 (438)
T 3o7q_A 174 QSLI 177 (438)
T ss_dssp THHH
T ss_pred HHHH
Confidence 7765
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.14 E-value=2.8e-06 Score=79.67 Aligned_cols=142 Identities=13% Similarity=0.043 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhhhhccc---CC-CChhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHH
Q psy853 152 LKNIGSLSLAFMVQFTAFQGTANLQSSIN---AK-EGLGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPY 225 (314)
Q Consensus 152 l~Nvi~lsi~F~l~ftAf~~~~~LqSSin---~~-~~lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iy 225 (314)
.+.++.+.+++++..........+...+. .. ...| ...++.+....++.++...+ ++|.|+.++++.+.+++-
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 105 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV 105 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHH-HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHH
Confidence 44566666666555544333333322221 11 1233 23444555566666666666 999999999999887766
Q ss_pred Hhhc-c----cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy853 226 IGFQ-F----YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLIS 300 (314)
Q Consensus 226 i~s~-~----yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs 300 (314)
.... + -++.+.++.+-++.|++.+..+++..+++.+.. .++.+++..+++.....++.++|.++.
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~~~~ 175 (451)
T 1pw4_A 106 MLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW----------SQKERGGIVSVWNCAHNVGGGIPPLLF 175 (451)
T ss_dssp HHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTC----------TTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHC----------CchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5443 3 467778899999999999999999999998876 357799999999999999999999888
Q ss_pred HHhh
Q psy853 301 SLET 304 (314)
Q Consensus 301 ~~il 304 (314)
..++
T Consensus 176 ~~l~ 179 (451)
T 1pw4_A 176 LLGM 179 (451)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=97.99 E-value=7.2e-05 Score=69.94 Aligned_cols=143 Identities=9% Similarity=-0.062 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhcccCC-CChhhHH----HHHHHHHHHHhhhcccee--ee--ccceeeeehhhhhH
Q psy853 153 KNIGSLSLAFMVQFTAFQGTANLQSSINAK-EGLGTVS----LSAIYAALVLSCIFVPTF--RL--TVKWTLCVSMMCYL 223 (314)
Q Consensus 153 ~Nvi~lsi~F~l~ftAf~~~~~LqSSin~~-~~lG~~s----lailY~~~~is~~f~P~I--~l--G~K~sLvig~l~Y~ 223 (314)
++++.+.+..++...++.+........-.+ .+..... .++......++.++.+.+ ++ |.|+.++++.+...
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 455566666666666666555544332221 2332222 333333444555556655 88 99998888776654
Q ss_pred -HHHhhccc-c--cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHh-hHHHHHH
Q psy853 224 -PYIGFQFY-P--RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQT-AELWGNL 298 (314)
Q Consensus 224 -iyi~s~~y-p--~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~-s~iiGnL 298 (314)
+......+ + +.+.++...++.|++.+..+.....++.+.. .++.+++..|++..+.+. +..+|..
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~~~~~~~~~~g~~~~~~ 401 (451)
T 1pw4_A 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA----------PKKAAGTAAGFTGLFGYLGGSVAASA 401 (451)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTS----------CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHh----------chhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333322 2 4555677778888888888877777777665 356799999999999999 9999998
Q ss_pred HHHHhhh
Q psy853 299 ISSLETV 305 (314)
Q Consensus 299 Is~~il~ 305 (314)
+...+.-
T Consensus 402 ~~g~l~~ 408 (451)
T 1pw4_A 402 IVGYTVD 408 (451)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776543
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.57 E-value=8.4e-05 Score=68.34 Aligned_cols=105 Identities=14% Similarity=0.113 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853 189 SLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAV 265 (314)
Q Consensus 189 slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~ 265 (314)
..++.+....++.++.+.+ ++|.|+.++++.+.+.+-.... +.++.+.++.+.++.|++.+..+++...++.+..
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~-- 117 (375)
T 2gfp_A 40 VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLY-- 117 (375)
T ss_dssp HHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHC--
Confidence 3344445555666666666 9999999999988776655443 3356677888999999999999999999988876
Q ss_pred hhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 266 YAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 266 y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
+++.+++..+++......+.++|.++...+
T Consensus 118 --------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 147 (375)
T 2gfp_A 118 --------ERTQLRHANSLLNMGILVSPLLAPLIGGLL 147 (375)
T ss_dssp --------HTSSCCSHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred --------CHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 345678888999988899888888876644
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.43 E-value=0.00017 Score=68.80 Aligned_cols=107 Identities=13% Similarity=0.005 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhhhcccee--e-eccceeeeehhhhhHHHHhhc-ccccceehhhhHHHhccCchhhhchhhhhHhhhhhh
Q psy853 190 LSAIYAALVLSCIFVPTF--R-LTVKWTLCVSMMCYLPYIGFQ-FYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAV 265 (314)
Q Consensus 190 lailY~~~~is~~f~P~I--~-lG~K~sLvig~l~Y~iyi~s~-~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~ 265 (314)
.++.+....+++++...+ + +|.|++++++.+.+.+..... +-++.+.++.+-++.|++.+..+++..+++.+...
T Consensus 60 ~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~- 138 (491)
T 4aps_A 60 MAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYD- 138 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcC-
Confidence 344444455566666666 8 899999999998887765543 34567778889999999999999999999888752
Q ss_pred hhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy853 266 YAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLET 304 (314)
Q Consensus 266 y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il 304 (314)
++++.+++.++++.....++.++|.++...+.
T Consensus 139 -------~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 170 (491)
T 4aps_A 139 -------EHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ 170 (491)
T ss_dssp -------SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------cccccceeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 12334777888888888888888887776543
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.20 E-value=0.00067 Score=64.46 Aligned_cols=106 Identities=12% Similarity=0.047 Sum_probs=83.7
Q ss_pred HHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc-------------------ccccceehhhhHHHhccCchhh
Q psy853 193 IYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ-------------------FYPRFYTLVPAGILVGIGAAPM 251 (314)
Q Consensus 193 lY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~-------------------~yp~~y~li~as~l~G~gagll 251 (314)
.+.-..+++++...+ ++|.|++++++.+.+.+....- +-++.+.++.+=.+.|+|.|..
T Consensus 64 ~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~ 143 (491)
T 4gc0_A 64 ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLA 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 344455666666666 9999999999999888775432 2355677888899999999999
Q ss_pred hchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhCCC
Q psy853 252 WAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETVLPD 308 (314)
Q Consensus 252 W~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~il~~~~ 308 (314)
++....|+.+.+ .++.|++..+++......+.+++.++.+......+
T Consensus 144 ~~~~~~~i~E~~----------p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 190 (491)
T 4gc0_A 144 SMLSPMYIAELA----------PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGD 190 (491)
T ss_dssp HHHHHHHHHTTS----------CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhhC----------CHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccc
Confidence 999999999987 46788999999888888888888887776655443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.05 E-value=0.00061 Score=65.60 Aligned_cols=103 Identities=10% Similarity=0.148 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhhhcccee--ee-ccceeeeehhhhhHHHHhhc-ccc-cceehhhhHHHhccCchhhhchhhhhHhhhhh
Q psy853 190 LSAIYAALVLSCIFVPTF--RL-TVKWTLCVSMMCYLPYIGFQ-FYP-RFYTLVPAGILVGIGAAPMWAAKATYLTQVGA 264 (314)
Q Consensus 190 lailY~~~~is~~f~P~I--~l-G~K~sLvig~l~Y~iyi~s~-~yp-~~y~li~as~l~G~gagllW~aqg~ylt~~s~ 264 (314)
.++.+....++.++.+.+ ++ |.|+.++++.+.+.+-.... +.+ +.+.++.+-++.|++.+..+++..+++.+...
T Consensus 60 ~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 139 (524)
T 2xut_A 60 FHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFD 139 (524)
T ss_dssp HHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcC
Confidence 344445556666666666 88 99999999888777655443 334 66778888999999999999999999887752
Q ss_pred hhhhhcccchhhhH---HHHHHHHHHHHHhhHHHHHHHHHH
Q psy853 265 VYAKLTDQAVDAII---VRFFGFFFLAWQTAELWGNLISSL 302 (314)
Q Consensus 265 ~y~~~~~~~~~~~~---gr~~giF~~~~q~s~iiGnLIs~~ 302 (314)
++.+ ...++++.....++.++|.++...
T Consensus 140 ----------~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~ 170 (524)
T 2xut_A 140 ----------QSNKSLAQKAFDMFYFTINFGSFFASLSMPL 170 (524)
T ss_dssp ----------TTTTTHHHHHHHHHHHHHHHHHHHHHHTSTH
T ss_pred ----------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233 344455777777777777665443
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=96.75 E-value=0.0047 Score=57.42 Aligned_cols=102 Identities=6% Similarity=-0.136 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhcccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhh
Q psy853 190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYA 267 (314)
Q Consensus 190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~ 267 (314)
.++......++.++.+.+ ++|.|+.+.++.+...+......+......+...++.|++.+..+...-.+..+..
T Consensus 301 ~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---- 376 (438)
T 3o7q_A 301 LTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNL---- 376 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc----
Confidence 334445556666667666 99999999988887766655544443333445558888888888876555544432
Q ss_pred hhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 268 KLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 268 ~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
.++ +++..++.. +..++..+|..+...+
T Consensus 377 ------~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l 404 (438)
T 3o7q_A 377 ------GQD-TKYGSSFIV-MTIIGGGIVTPVMGFV 404 (438)
T ss_dssp ------GGG-HHHHHHHHH-HTTHHHHHHHHHHHHH
T ss_pred ------ccc-ccchhhHHH-HHHHHHHHHHHHHHHH
Confidence 122 555555554 5557777777766544
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=96.13 E-value=0.0028 Score=58.02 Aligned_cols=137 Identities=13% Similarity=0.118 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhcccCC-CChhhHHHHHHHHHHHHhhhcccee--eeccce--eeeehhhh-h----H
Q psy853 154 NIGSLSLAFMVQFTAFQGTANLQSSINAK-EGLGTVSLSAIYAALVLSCIFVPTF--RLTVKW--TLCVSMMC-Y----L 223 (314)
Q Consensus 154 Nvi~lsi~F~l~ftAf~~~~~LqSSin~~-~~lG~~slailY~~~~is~~f~P~I--~lG~K~--sLvig~l~-Y----~ 223 (314)
++..+.+..++.+.++.+........-.+ .+......+.++....++.++...+ ++..|. .+.++... . .
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~ 279 (375)
T 2gfp_A 200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLL 279 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTSSS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555566665554443332211 1233333444555555555444333 333332 22332222 1 1
Q ss_pred HHHhhcc-cccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy853 224 PYIGFQF-YPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISS 301 (314)
Q Consensus 224 iyi~s~~-yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~ 301 (314)
++..... .++.+.++.+.++.|++.+..++....++.+.. ++.+++..|+.....+++..+|+.+..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-----------p~~~g~~~g~~~~~~~~g~~~~~~~~g 347 (375)
T 2gfp_A 280 MWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPF-----------PFLAGTAGALVGGLQNIGSGVLASLSA 347 (375)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHH-----------HHHHHHHHHHHHHHHHHHHHCCSTTCT
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhC-----------CcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 1111110 124455667888999999999998888877664 256899999998888888877765543
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=95.44 E-value=0.008 Score=57.08 Aligned_cols=61 Identities=16% Similarity=0.145 Sum_probs=47.3
Q ss_pred cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 233 RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 233 ~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
..+.++++.++.|++.+..++..-.++.+.. .++.+++..|++....+++..+|..+...+
T Consensus 385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~----------p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~ 445 (491)
T 4aps_A 385 SPLWLVGSWALVILGEMLISPVGLSVTTKLA----------PKAFNSQMMSMWFLSSSVGSALNAQLVTLY 445 (491)
T ss_dssp CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHT----------TTTCSSSSTHHHHHHHHHHHHHHHHHGGGG
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678889999999988888877777665 356678888998888888888888776543
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=95.04 E-value=0.043 Score=51.61 Aligned_cols=97 Identities=14% Similarity=0.032 Sum_probs=55.2
Q ss_pred HHHHHhhhcccee--eeccceeeeehhhhhHHHHhh-cccccceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcc
Q psy853 195 AALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGF-QFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTD 271 (314)
Q Consensus 195 ~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s-~~yp~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~ 271 (314)
....++.++.+.+ |+|.|+.++++.+..++-... .+.++.+.++...++.|++.+..+...-.|+.+..
T Consensus 270 ~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------- 341 (417)
T 2cfq_A 270 LLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF-------- 341 (417)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS--------
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
Confidence 3444556666666 999999998887776653322 22344455556666667665555554445554443
Q ss_pred cchhhhHHHHHHH-HHHHHHhhHHHHHHHHH
Q psy853 272 QAVDAIIVRFFGF-FFLAWQTAELWGNLISS 301 (314)
Q Consensus 272 ~~~~~~~gr~~gi-F~~~~q~s~iiGnLIs~ 301 (314)
.++.+++..++ +.....++.++|+++..
T Consensus 342 --p~~~~g~~~g~~~~~~~~lg~~~gp~l~G 370 (417)
T 2cfq_A 342 --EVRFSATIYLVCFCFFKQLAMIFMSVLAG 370 (417)
T ss_dssp --CHHHHHHHHHHHHTTTHHHHHHHHTHHHH
T ss_pred --CHHHHHHHHHHHHHHHHhHHHHHhhhhHH
Confidence 24556665555 23444455555554443
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=93.21 E-value=0.022 Score=54.58 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=48.8
Q ss_pred cceehhhhHHHhccCchhhhchhhhhHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy853 233 RFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLE 303 (314)
Q Consensus 233 ~~y~li~as~l~G~gagllW~aqg~ylt~~s~~y~~~~~~~~~~~~gr~~giF~~~~q~s~iiGnLIs~~i 303 (314)
..+.++++.++.|++.+..++..-.++.+.. .++.+++..|++..+.+++.++|..+...+
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~----------p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~ 464 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQA----------PKAMKGTIMSFWTLSVTVGNLWVLLANVSV 464 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHC----------CTTCCTTTHHHHGGGHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------cHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455678889999999999988888877765 356788889999999999998888877654
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=90.21 E-value=0.21 Score=46.92 Aligned_cols=73 Identities=19% Similarity=0.154 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHHhhc----ccccc-eehhhhHHHhccCchhhhchhhhhHhhh
Q psy853 190 LSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYIGFQ----FYPRF-YTLVPAGILVGIGAAPMWAAKATYLTQV 262 (314)
Q Consensus 190 lailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi~s~----~yp~~-y~li~as~l~G~gagllW~aqg~ylt~~ 262 (314)
.++......++.++...+ ++|.|+.++++.+.+.+..... +.+.. ...+.+-.+.|++.+..|.+.......+
T Consensus 49 ~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 128 (417)
T 2cfq_A 49 FAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAF 128 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334445555666666666 9999999998887765432211 11110 1123455667777777776554444333
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=85.79 E-value=0.023 Score=53.75 Aligned_cols=72 Identities=6% Similarity=-0.006 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhcccC----CCChhhHHHHHHHHHHHHhhhcccee--eeccceeeeehhhhhHHHH
Q psy853 155 IGSLSLAFMVQFTAFQGTANLQSSINA----KEGLGTVSLSAIYAALVLSCIFVPTF--RLTVKWTLCVSMMCYLPYI 226 (314)
Q Consensus 155 vi~lsi~F~l~ftAf~~~~~LqSSin~----~~~lG~~slailY~~~~is~~f~P~I--~lG~K~sLvig~l~Y~iyi 226 (314)
.+.+...++..++.+.........+.. ..........+......++++++..+ ++|.|+.++.+..+..+..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~ 356 (491)
T 4gc0_A 279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGM 356 (491)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHH
Confidence 444445555556655555544433321 11112223334444555555665555 9999999988877665443
No 15
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=29.88 E-value=82 Score=21.54 Aligned_cols=36 Identities=25% Similarity=0.135 Sum_probs=21.3
Q ss_pred CCCCchhHHHHHHHHHHHHHH-----HHHHHHHhcCCCCCc
Q psy853 71 ERPPDSEIYHITGIYLSCIVV-----ATIMIALMVDPLSSG 106 (314)
Q Consensus 71 ~rP~~~~i~~l~gIy~~c~vl-----Avl~va~fld~l~~~ 106 (314)
..|+.++.+.|.-+=++.+.+ ++=++.+|+||.+.+
T Consensus 5 ~~pdm~RRqfln~l~~G~~a~~a~~~~~P~v~ffvpP~~gg 45 (49)
T 1q90_R 5 EVPDMNKRNIMNLILAGGAGLPITTLALGYGAFFVPPSSGG 45 (49)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHhhheeecCCccCC
Confidence 358888888776555444432 334678999999875
Done!