RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy853
(314 letters)
>gnl|CDD|114686 pfam05978, UNC-93, Ion channel regulatory protein UNC-93. This
family of proteins is a component of a multi-subunit
protein complex which is involved in the coordination of
muscle contraction. UNC-93 is most likely an ion channel
regulatory protein.
Length = 157
Score = 68.5 bits (168), Expect = 4e-14
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 12/116 (10%)
Query: 158 LSLAFMVQFTAFQGTAN-LQSSINAKE---------GLGTVSLSAIYAALVLSCIFVPTF 207
L F+ FTAF L+S I++ G SL+ IY +SC+F P+
Sbjct: 1 LGFGFLFLFTAFDSQGFILESVIHSLHERDPGTISAYAGYYSLAIIYFFFTVSCLFAPSV 60
Query: 208 --RLTVKWTLCVSMMCYLPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQ 261
LT KW + + +CY + + Y L + L+G+GAA +W + YLT+
Sbjct: 61 VDILTPKWAMVIGALCYASFQLGFLFLNSYYLYFSSALLGVGAAFLWTGQGQYLTE 116
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 45.4 bits (108), Expect = 2e-05
Identities = 25/152 (16%), Positives = 45/152 (29%), Gaps = 17/152 (11%)
Query: 158 LSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVPTF------RLTV 211
L L F + + + GL I +A L R
Sbjct: 4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGR 63
Query: 212 KWTLCVSMMCY-LPYIGFQFYPRFYTLVPAGILVGIGAAPMWAAKATYLTQVGAVYAKLT 270
+ L + ++ + L + F + L+ L+G+G ++ A A +
Sbjct: 64 RRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAAL----------IA 113
Query: 271 DQAVDAIIVRFFGFFFLAWQTAELWGNLISSL 302
+ R G F + L G L+ L
Sbjct: 114 EWFPPKERGRALGLFSAGFGLGALLGPLLGGL 145
>gnl|CDD|236756 PRK10764, PRK10764, potassium-tellurite ethidium and proflavin
transporter; Provisional.
Length = 324
Score = 31.8 bits (73), Expect = 0.35
Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 17/63 (26%)
Query: 234 FYTLVPAG-ILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTA 292
F +L+P +LV IG P A L G V F AW+TA
Sbjct: 82 FVSLIPITTMLVAIGLVPYSRPLAVVLFSFGVV----------------GQLAFAAWRTA 125
Query: 293 ELW 295
LW
Sbjct: 126 GLW 128
>gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase.
Length = 407
Score = 30.9 bits (70), Expect = 0.82
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 73 PPDS--EIYHITGIYLSCIVVATIMIALMVDPLSSG-ISNKGFKDEDGNDLQ 121
PP + EIY + I LS V I + LMV+P G IS F E L+
Sbjct: 310 PPKTVEEIYKVASIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILE 361
>gnl|CDD|151444 pfam10997, DUF2837, Protein of unknown function (DUF2837). This
bacterial family of proteins has no known function.
Length = 254
Score = 30.7 bits (70), Expect = 0.83
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 79 YHITGIYLSCIV--VATIMIALMVDPLSSGI 107
Y T LS I+ ATI++ L VDP S I
Sbjct: 176 YRTTASTLSGIINGFATILLTLFVDPKLSVI 206
>gnl|CDD|140272 PTZ00245, PTZ00245, ubiquitin activating enzyme; Provisional.
Length = 287
Score = 30.4 bits (68), Expect = 1.1
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 11/73 (15%)
Query: 8 IISKLKANSLSIRNTLPPSQVLSSGAHGGGHHVNSSANNVEETRLRSCGSNFCVIGGKGL 67
++S+L+ L+ + +VL + AHG G SA+ V +T +C + + + +
Sbjct: 210 VVSRLQLQQLTAADV---QEVLQTCAHGAG-----SADCVSDTIAGACIAQHLI---RQI 258
Query: 68 DNLERPPDSEIYH 80
L +PPD++ YH
Sbjct: 259 GALNQPPDAQSYH 271
>gnl|CDD|215047 PLN00070, PLN00070, aconitate hydratase.
Length = 936
Score = 30.5 bits (69), Expect = 1.5
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 236 TLVPAGILVGIGAAPMWAAKATYLTQVGAVYAK 268
T++ AG G G++ WAAK L V AV AK
Sbjct: 809 TIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAK 841
>gnl|CDD|233363 TIGR01341, aconitase_1, aconitate hydratase 1. This model
represents one form of the TCA cycle enzyme aconitate
hydratase, also known as aconitase and citrate
hydro-lyase. It is found in bacteria, archaea, and
eukaryotic cytosol. It has been shown to act also as an
iron-responsive element binding protein in animals and
may have the same role in other eukaryotes [Energy
metabolism, TCA cycle].
Length = 876
Score = 30.2 bits (68), Expect = 1.9
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 236 TLVPAGILVGIGAAPMWAAKATYLTQVGAVYAK 268
+V AG G G++ WAAK T L V AV A+
Sbjct: 750 LVVIAGKEYGSGSSRDWAAKGTKLLGVKAVIAE 782
>gnl|CDD|233831 TIGR02352, thiamin_ThiO, glycine oxidase ThiO. This family
consists of the homotetrameric, FAD-dependent glycine
oxidase ThiO, from species such as Bacillus subtilis
that use glycine in thiamine biosynthesis. In general,
members of this family will not be found in species such
as E. coli that instead use tyrosine and the ThiH
protein [Biosynthesis of cofactors, prosthetic groups,
and carriers, Thiamine].
Length = 337
Score = 29.3 bits (66), Expect = 2.4
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 68 DNL----ERPPDSEIYHITGIYLSCIVVATIMIALMVDPLSSGI 107
DNL E P D + TG Y + I++A ++ D +
Sbjct: 294 DNLPYIGEHPEDRRLLIATGHYRNGILLAPATAEVIADLILGKE 337
>gnl|CDD|232916 TIGR00318, cyaB, adenylyl cyclase CyaB, putative. The protein CyaB
from Aeromonas hydrophila is a second adenylyl cyclase
from that species, as demonstrated by complementation in
E. coli and by assay of the enzymatic properties of
purified recombinant protein. It has no detectable
homology to any other protein of known function, and has
several unusual properties, including an optimal
temperature of 65 degrees and an optimal pH of 9.5. A
cluster of uncharaterized archaeal homologs may be
orthologous and serve (under certain circumstances) to
produce the regulatory metabolite cyclic AMP (cAMP)
[Regulatory functions, Small molecule interactions].
Length = 174
Score = 29.0 bits (65), Expect = 2.4
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 113 KDEDGNDL---QKPPMPMVSGTEEEQIPRGKFKMSTKEKWR-ILKNIGSLSLAFMVQFTA 168
+ G + P + S T +E +FK+ E ILK +G + +++
Sbjct: 55 RKLTGEKFVTYKGPKIDNESKTRKEI----EFKIEDIENALQILKKLGFKKVYEVIKKRR 110
Query: 169 FQGTANLQSSINAKEGLGT 187
T L SI+ EGLG
Sbjct: 111 IYQTNELNVSIDDVEGLGF 129
>gnl|CDD|187764 cd09324, TDT_TehA, Tellurite-resistance/Dicarboxylate Transporter
(TDT) family includes TehA protein. This subfamily
includes Tellurite resistance protein TehA that belongs
to the C4-dicarboxylate transporter/malic acid transport
(TDT) protein family and is a homolog of plant Slow
Anion Channel-Associated 1 (SLAC1). The tehA gene
encodes an integral membrane protein that has been shown
to have efflux activity of quaternary ammonium
compounds. TehA protein of Escherichia coli functions as
a tellurite-resistance uptake permease.
Length = 301
Score = 28.4 bits (64), Expect = 4.3
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 17/63 (26%)
Query: 234 FYTLVP-AGILVGIGAAPMWAAKATYLTQVGAVYAKLTDQAVDAIIVRFFGFFFLAWQTA 292
F +L+P +LVGI P A L +G + F AW+T
Sbjct: 73 FISLIPITTMLVGIALYPYSRLLAEVLIVLGII----------------GQLAFAAWRTG 116
Query: 293 ELW 295
LW
Sbjct: 117 GLW 119
>gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional.
Length = 481
Score = 28.8 bits (65), Expect = 4.4
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 67 LDNLERPPDSEIYHITGIYLSCIVVATIMIALMVDPLSSG 106
L N+ +IY + I L VV +M LM +P G
Sbjct: 314 LTNIPPEVREQIYKLASINLCSNVVGQLMTGLMCNPPREG 353
>gnl|CDD|238812 cd01580, AcnA_IRP_Swivel, Aconitase A swivel domain. This is the
major form of the TCA cycle enzyme aconitate hydratase,
also known as aconitase and citrate hydro-lyase. It
includes bacterial and archaeal aconitase A, and the
eukaryotic cytosolic form of aconitase. This group also
includes sequences that have been shown to act as an
iron-responsive element (IRE) binding protein in animals
and may have the same role in other eukaryotes. This is
the aconitase-like swivel domain, which is believed to
undergo swivelling conformational change in the enzyme
mechanism.
Length = 171
Score = 26.9 bits (60), Expect = 9.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 240 AGILVGIGAAPMWAAKATYLTQVGAVYAK 268
AG G G++ WAAK +L V AV A+
Sbjct: 102 AGKEYGSGSSRDWAAKGPFLLGVKAVIAE 130
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.417
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,976,469
Number of extensions: 1509709
Number of successful extensions: 1308
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1302
Number of HSP's successfully gapped: 37
Length of query: 314
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 217
Effective length of database: 6,635,264
Effective search space: 1439852288
Effective search space used: 1439852288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)