RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy853
(314 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.011
Identities = 53/282 (18%), Positives = 81/282 (28%), Gaps = 107/282 (37%)
Query: 64 GKGLDNLERPP---------DSEIYHITGIYLSCIVVATIMIALMVDPLSSGISNKGFKD 114
G G+D + D+ G + IV+ +P++ I G K
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVIN--------NPVNLTIHFGGEK- 1680
Query: 115 EDGNDLQKPPMPMVSGTEEEQIPRGKFKMSTKEKWRILKNIGSLSLAFMVQFTAFQG--- 171
G +++ M+ E I GK K +I K I S ++ F+
Sbjct: 1681 --GKRIRENYSAMI----FETIVDGKLKTE-----KIFKEINEHSTSYT-----FRSEKG 1724
Query: 172 ----TANLQ-----SSINAKEGL---GTVSLSAI--------YAAL-----VLSCIFVPT 206
T Q A E L G + A YAAL V+S
Sbjct: 1725 LLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMS--IESL 1782
Query: 207 FRLTVKWTLCVSMMCYLPYIGFQFYPR---FYTLVPAGILVGIGAAPMWAAKATYLTQVG 263
+ FY R VP +G M A G
Sbjct: 1783 VEVV-------------------FY-RGMTMQVAVPRDE-LGRSNYGMIAINP------G 1815
Query: 264 AVYAKLTDQAVDAIIVRFFGFFFLAWQTAELWGNLISSLETV 305
V A + +A+ ++ R + +T L +E V
Sbjct: 1816 RVAASFSQEALQYVVER------VGKRTGWL-------VEIV 1844
Score = 33.9 bits (77), Expect = 0.080
Identities = 43/239 (17%), Positives = 68/239 (28%), Gaps = 97/239 (40%)
Query: 20 RNTLPPSQVLSSGAHGGGH-----HVNSSANNVEETRLRSCGSNFCVIGGKGLDNLERPP 74
+LPPS + S + G +++ + + N P
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT-------------NSHLPA 362
Query: 75 DSEIYHITGIYL----SCIVVATIMIALMVDPLSSG--ISNKGFKDEDGNDLQKPPMPMV 128
++ I L +VV SG S G L+K P
Sbjct: 363 GKQVE----ISLVNGAKNLVV-------------SGPPQSLYGLN----LTLRKAKAP-- 399
Query: 129 SGTEEEQIPRGKFKMSTKEKWRILKNIGSLSLAFMVQF---TA-F-------------QG 171
SG ++ +IP F ++ K L F +F + F +
Sbjct: 400 SGLDQSRIP---F---SERK-----------LKFSNRFLPVASPFHSHLLVPASDLINKD 442
Query: 172 TANLQSSINAKEGLG-TV----------SLSAIYAALVLSCIFVPTFRLTVKWTLCVSM 219
S NAK+ + V LS + ++ CI RL VKW
Sbjct: 443 LVKNNVSFNAKD-IQIPVYDTFDGSDLRVLSGSISERIVDCI----IRLPVKWETTTQF 496
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.54
Identities = 24/119 (20%), Positives = 37/119 (31%), Gaps = 37/119 (31%)
Query: 16 SLSI--RNTLPPSQVLSSGAHGGGHHV---NSSANNVEE--TRLRSCGSNFCVIGGKGLD 68
LS+ + P+ +LS + + ++V +L L
Sbjct: 377 RLSVFPPSAHIPTILLS---------LIWFDVIKSDVMVVVNKLHK----------YSL- 416
Query: 69 NLERPPDSEIYHITGIYLSCIVVATIMIAL---MVDPLSSGISNKGFKDEDGNDLQKPP 124
+E+ P I IYL V AL +VD K D +DL P
Sbjct: 417 -VEKQPKESTISIPSIYLELKVKLENEYALHRSIVD------HYNIPKTFDSDDLIPPY 468
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 3.9
Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 9/25 (36%)
Query: 233 RFYTLVPAGILVGIGAAPMWAAKAT 257
+ Y +AP A KAT
Sbjct: 30 KLYA--D-------DSAPALAIKAT 45
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; HET:
FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Length = 2060
Score = 28.1 bits (62), Expect = 5.5
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 17 LSIRNTLPPSQVLS--SGAHGGGHHVNSSANN-VEET--RLRSCGSNFCVIGGKGLDNLE 71
++I P ++ +G GGGHH + + R+R C SN ++ G G E
Sbjct: 710 INIAKANPTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKC-SNIVLVAGSGFGGSE 768
Query: 72 R 72
Sbjct: 769 D 769
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_G* 3hmj_G*
Length = 2051
Score = 27.7 bits (61), Expect = 6.4
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 17 LSIRNTLPPSQVLS--SGAHGGGHHVNSSANN-VEET--RLRSCGSNFCVIGGKGLDNLE 71
++I P + +G GGGHH A+ + + ++R N +I G G + +
Sbjct: 717 INIAKAHPNFPIALQWTGGRGGGHHSFEDAHTPMLQMYSKIRRH-PNIMLIFGSGFGSAD 775
Query: 72 R 72
Sbjct: 776 D 776
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO;
HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB:
4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A*
Length = 481
Score = 27.0 bits (59), Expect = 8.9
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 29 LSSGAHGGGHHVNSS-ANNVEETRL 52
++ HG HH S N+V L
Sbjct: 147 IACDIHGKNHHSAGSFGNHVRSMDL 171
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.417
Gapped
Lambda K H
0.267 0.0523 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,778,865
Number of extensions: 279291
Number of successful extensions: 338
Number of sequences better than 10.0: 1
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 8
Length of query: 314
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 221
Effective length of database: 4,105,140
Effective search space: 907235940
Effective search space used: 907235940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)