RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy853
         (314 letters)



>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase
           {Alicyclobacillus acidocaldarius [TaxId: 405212]}
          Length = 271

 Score = 26.9 bits (59), Expect = 3.2
 Identities = 9/57 (15%), Positives = 16/57 (28%)

Query: 149 WRILKNIGSLSLAFMVQFTAFQGTANLQSSINAKEGLGTVSLSAIYAALVLSCIFVP 205
            R L     LS+    +    +    L          G +     YA + L  + + 
Sbjct: 186 DRALHGYQKLSVHPFRRAAEIRALDWLLERQAGDGSWGGIQPPWFYALIALKILDMT 242


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,154,824
Number of extensions: 51368
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 2
Length of query: 314
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,240,546
Effective search space: 284085034
Effective search space used: 284085034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)