BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8530
         (68 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TZB|A Chain A, Crystal Structure Of Native Phosphoglucose/phosphomannose
           Isomerase From Pyrobaculum Aerophilum
 pdb|1TZB|B Chain B, Crystal Structure Of Native Phosphoglucose/phosphomannose
           Isomerase From Pyrobaculum Aerophilum
 pdb|1TZC|A Chain A, Crystal Structure Of PhosphoglucosePHOSPHOMANNOSE
           ISOMERASE FROM Pyrobaculum Aerophilum In Complex With
           5-Phosphoarabinonate
 pdb|1TZC|B Chain B, Crystal Structure Of PhosphoglucosePHOSPHOMANNOSE
           ISOMERASE FROM Pyrobaculum Aerophilum In Complex With
           5-Phosphoarabinonate
 pdb|1X9H|A Chain A, Crystal Structure Of PhosphoglucosePHOSPHOMANNOSE
           ISOMERASE FROM Pyrobaculum Aerophilum In Complex With
           Fructose 6-Phosphate
 pdb|1X9H|B Chain B, Crystal Structure Of PhosphoglucosePHOSPHOMANNOSE
           ISOMERASE FROM Pyrobaculum Aerophilum In Complex With
           Fructose 6-Phosphate
 pdb|1X9I|A Chain A, Crystal Structure Of Crystal Structure Of
           PhosphoglucosePHOSPHOMANNOSE
           PHOSPHOGLUCOSEPHOSPHOMANNOSEISOMERASE From Pyrobaculum
           Aerophilum In Complex With Glucose 6-Phosphate
 pdb|1X9I|B Chain B, Crystal Structure Of Crystal Structure Of
           PhosphoglucosePHOSPHOMANNOSE
           PHOSPHOGLUCOSEPHOSPHOMANNOSEISOMERASE From Pyrobaculum
           Aerophilum In Complex With Glucose 6-Phosphate
          Length = 302

 Score = 25.8 bits (55), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 30  ARERRVPIVMLTSGGYLKQ 48
           A+ RR+P V +T+GG L Q
Sbjct: 102 AKRRRIPAVAITTGGRLAQ 120


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.142    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,797,272
Number of Sequences: 62578
Number of extensions: 51442
Number of successful extensions: 189
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 188
Number of HSP's gapped (non-prelim): 1
length of query: 68
length of database: 14,973,337
effective HSP length: 38
effective length of query: 30
effective length of database: 12,595,373
effective search space: 377861190
effective search space used: 377861190
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)