BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8530
         (68 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q96DB2|HDA11_HUMAN Histone deacetylase 11 OS=Homo sapiens GN=HDAC11 PE=1 SV=1
          Length = 347

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 42/49 (85%)

Query: 18  GIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLI 66
           GI++RDELVF   R RRVPI+M+TSGGY K+TARIIADSILNL  LGLI
Sbjct: 277 GIVKRDELVFRMVRGRRVPILMVTSGGYQKRTARIIADSILNLFGLGLI 325


>sp|Q9GKU5|HDA11_MACFA Histone deacetylase 11 OS=Macaca fascicularis GN=HDAC11 PE=2 SV=2
          Length = 347

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/49 (73%), Positives = 41/49 (83%)

Query: 18  GIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLI 66
           GI++RDELVF   R R VPI+M+TSGGY K+TARIIADSILNL  LGLI
Sbjct: 277 GIVKRDELVFRMVRGRHVPILMVTSGGYQKRTARIIADSILNLFGLGLI 325


>sp|Q91WA3|HDA11_MOUSE Histone deacetylase 11 OS=Mus musculus GN=Hdac11 PE=2 SV=1
          Length = 347

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 41/50 (82%)

Query: 18  GIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLIS 67
           GI++RDE+VF   R   +PI+M+TSGGY K+TARIIADSILNL DLGLI 
Sbjct: 277 GIVKRDEVVFRVVRAHDIPILMVTSGGYQKRTARIIADSILNLHDLGLIG 326


>sp|Q944K3|HDA2_ARATH Histone deacetylase 2 OS=Arabidopsis thaliana GN=HDA2 PE=1 SV=2
          Length = 387

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/49 (65%), Positives = 39/49 (79%)

Query: 18  GIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLI 66
           GI  RDE VF  ARE+ +P+VMLTSGGY+K +AR+IADSI NL+  GLI
Sbjct: 334 GITSRDEKVFRFAREKNIPLVMLTSGGYMKSSARVIADSIENLSRQGLI 382


>sp|Q9T1S9|VP19_BPAPS Putative portal protein p19 OS=Acyrthosiphon pisum secondary
           endosymbiont phage 1 GN=19 PE=3 SV=1
          Length = 720

 Score = 30.0 bits (66), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 29/54 (53%)

Query: 4   TWMGDQVDMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSI 57
           T+  DQ++++ED L  I   E      + RRV + ++   G+L++  RI  + I
Sbjct: 252 TYDSDQLELVEDELADIGFIEAARRTIKRRRVYVSVVDGEGFLEKAQRIPGEHI 305


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.328    0.142    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,499,423
Number of Sequences: 539616
Number of extensions: 700014
Number of successful extensions: 2370
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2365
Number of HSP's gapped (non-prelim): 7
length of query: 68
length of database: 191,569,459
effective HSP length: 40
effective length of query: 28
effective length of database: 169,984,819
effective search space: 4759574932
effective search space used: 4759574932
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)