Query psy8530
Match_columns 68
No_of_seqs 108 out of 390
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 21:18:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8530.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8530hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zz1_A Histone deacetylase-lik 99.1 1.5E-10 5.3E-15 85.7 8.5 60 2-61 267-329 (369)
2 3ew8_A HD8, histone deacetylas 98.7 1.5E-08 5.2E-13 76.0 5.6 50 2-58 266-316 (388)
3 4a69_A Histone deacetylase 3,; 98.7 1.9E-08 6.4E-13 75.0 6.0 52 2-60 258-310 (376)
4 1c3p_A Protein (HDLP (histone 98.7 6.4E-08 2.2E-12 71.8 7.3 42 2-47 257-299 (375)
5 3max_A HD2, histone deacetylas 98.6 3.1E-08 1.1E-12 73.8 4.9 50 2-58 257-307 (367)
6 3men_A Acetylpolyamine aminohy 98.6 9E-08 3.1E-12 71.3 7.0 43 2-48 301-344 (362)
7 3q9b_A Acetylpolyamine amidohy 98.6 1E-07 3.5E-12 70.4 6.6 44 2-49 283-327 (341)
8 2vqm_A HD4, histone deacetylas 98.4 3.6E-07 1.2E-11 68.4 5.2 43 2-47 289-334 (413)
9 2pqp_A HD7A, histone deacetyla 97.7 2.8E-05 9.5E-10 59.0 4.7 56 2-60 318-377 (421)
10 2ajg_A Leucyl-tRNA synthetase; 67.6 4 0.00014 27.0 2.8 44 21-67 126-193 (196)
11 1eke_A Ribonuclease HII; endon 64.1 4.7 0.00016 27.6 2.6 41 5-50 146-189 (230)
12 3ewi_A N-acylneuraminate cytid 63.9 9.4 0.00032 24.2 3.9 23 21-43 39-61 (168)
13 1qtw_A Endonuclease IV; DNA re 63.8 20 0.00068 23.1 5.6 38 23-60 91-130 (285)
14 3ian_A Chitinase; structural g 62.1 26 0.0009 24.5 6.3 50 12-65 61-115 (321)
15 2pc4_A 41 kDa antigen, fructos 60.2 18 0.00063 27.1 5.4 46 13-58 250-295 (369)
16 3lxy_A 4-hydroxythreonine-4-ph 59.6 30 0.001 25.2 6.4 53 13-65 179-242 (334)
17 3qc0_A Sugar isomerase; TIM ba 59.0 32 0.0011 21.9 7.0 40 21-60 83-125 (275)
18 3ayv_A Putative uncharacterize 57.3 25 0.00087 22.4 5.2 27 21-47 76-102 (254)
19 3hcw_A Maltose operon transcri 56.6 30 0.001 22.4 5.5 40 25-64 82-130 (295)
20 2q02_A Putative cytoplasmic pr 56.2 27 0.00093 22.2 5.2 44 17-60 81-125 (272)
21 3vni_A Xylose isomerase domain 55.3 21 0.00072 23.2 4.6 24 23-46 90-114 (294)
22 4fe3_A Cytosolic 5'-nucleotida 55.1 9.2 0.00032 25.5 2.8 20 25-45 148-167 (297)
23 3cqj_A L-ribulose-5-phosphate 54.9 24 0.00082 23.1 4.8 40 21-60 108-149 (295)
24 3ktc_A Xylose isomerase; putat 54.9 17 0.0006 24.6 4.3 38 23-60 109-152 (333)
25 3huu_A Transcription regulator 54.4 35 0.0012 22.1 5.5 40 25-64 97-143 (305)
26 1i39_A Ribonuclease HII, RNAse 53.9 11 0.00038 25.9 3.1 41 5-50 146-189 (225)
27 2qap_A Fructose-1,6-bisphospha 53.5 27 0.00094 26.3 5.4 39 13-51 272-310 (391)
28 2f9i_B Acetyl-coenzyme A carbo 52.5 11 0.00038 26.6 3.0 26 21-46 143-169 (285)
29 3e8m_A Acylneuraminate cytidyl 52.4 11 0.00037 22.5 2.6 22 22-43 35-56 (164)
30 1io2_A Ribonuclease HII; endon 52.2 4.4 0.00015 27.5 0.8 41 5-50 132-175 (213)
31 3k4h_A Putative transcriptiona 52.1 40 0.0014 21.4 5.5 39 26-64 84-130 (292)
32 3o0a_A Leucyl-tRNA synthetase 51.8 11 0.00038 25.5 2.8 44 21-67 147-212 (219)
33 3jy6_A Transcriptional regulat 51.2 36 0.0012 21.6 5.1 40 25-64 76-122 (276)
34 3aal_A Probable endonuclease 4 51.2 25 0.00085 23.3 4.5 39 24-62 97-136 (303)
35 2gmw_A D,D-heptose 1,7-bisphos 49.6 45 0.0015 20.9 5.4 21 24-44 56-76 (211)
36 3gv0_A Transcriptional regulat 49.4 47 0.0016 21.3 5.5 39 26-64 81-126 (288)
37 3bv4_A Fructose-bisphosphate a 49.4 25 0.00085 26.1 4.6 41 15-56 241-281 (341)
38 1uax_A Ribonuclease HII, ribon 49.1 5.3 0.00018 27.3 0.9 41 5-50 132-175 (220)
39 2j6v_A UV endonuclease, UVDE; 48.1 40 0.0014 23.4 5.3 51 11-62 128-185 (301)
40 3uqz_A DNA processing protein 48.0 33 0.0011 24.5 4.9 31 23-53 147-181 (288)
41 3rot_A ABC sugar transporter, 47.7 38 0.0013 21.9 4.9 39 26-64 78-127 (297)
42 3kjx_A Transcriptional regulat 47.7 43 0.0015 22.2 5.3 40 25-64 138-184 (344)
43 1ydn_A Hydroxymethylglutaryl-C 46.9 35 0.0012 23.2 4.8 31 11-41 110-140 (295)
44 3mn1_A Probable YRBI family ph 46.7 19 0.00063 22.5 3.1 23 22-44 50-72 (189)
45 3e3m_A Transcriptional regulat 46.2 54 0.0019 21.9 5.6 40 25-64 140-186 (355)
46 1k1e_A Deoxy-D-mannose-octulos 45.6 27 0.00093 21.4 3.7 25 21-45 38-62 (180)
47 2f9i_A Acetyl-coenzyme A carbo 45.2 23 0.00079 25.3 3.8 35 14-49 141-176 (327)
48 1edt_A Endo-beta-N-acetylgluco 45.1 23 0.00079 24.2 3.6 40 26-65 75-123 (271)
49 1wv9_A Rhodanese homolog TT165 45.1 16 0.00055 20.3 2.4 24 22-46 65-88 (94)
50 3h5o_A Transcriptional regulat 44.9 50 0.0017 21.8 5.2 39 26-64 133-177 (339)
51 3eef_A N-carbamoylsarcosine am 44.7 32 0.0011 21.7 4.0 30 16-45 24-53 (182)
52 3qk7_A Transcriptional regulat 44.7 56 0.0019 21.0 5.3 40 25-64 79-125 (294)
53 3txy_A Isochorismatase family 44.5 36 0.0012 21.9 4.4 27 15-41 34-60 (199)
54 2v79_A DNA replication protein 44.3 10 0.00036 23.7 1.6 33 35-68 51-83 (135)
55 3pdw_A Uncharacterized hydrola 44.2 57 0.0019 20.7 5.2 29 15-43 19-47 (266)
56 3poh_A Endo-beta-N-acetylgluco 44.1 44 0.0015 25.3 5.3 43 24-66 231-281 (451)
57 1v77_A PH1877P, hypothetical p 43.7 18 0.00062 23.7 2.8 26 17-42 143-168 (212)
58 3fvv_A Uncharacterized protein 43.4 21 0.00071 21.9 2.9 19 25-43 99-117 (232)
59 3cz8_A Putative sporulation-sp 43.4 35 0.0012 23.4 4.4 21 23-43 55-75 (319)
60 2pr7_A Haloacid dehalogenase/e 43.4 34 0.0012 19.0 3.7 23 24-46 24-46 (137)
61 3n1u_A Hydrolase, HAD superfam 42.7 23 0.00078 22.2 3.1 23 21-43 49-71 (191)
62 3dx5_A Uncharacterized protein 42.7 65 0.0022 20.7 6.3 30 17-46 80-109 (286)
63 1wka_A Valyl-tRNA synthetase; 42.4 22 0.00075 22.4 3.0 40 27-66 89-140 (147)
64 3tva_A Xylose isomerase domain 42.3 67 0.0023 20.7 5.9 27 20-46 101-127 (290)
65 1ytl_A Acetyl-COA decarboxylas 42.3 10 0.00036 24.8 1.5 17 25-42 53-69 (174)
66 1vi6_A 30S ribosomal protein S 42.1 13 0.00045 25.4 2.0 21 21-41 125-145 (208)
67 3gbv_A Putative LACI-family tr 41.8 55 0.0019 20.7 4.9 40 25-64 85-132 (304)
68 1wny_A Isoleucyl-tRNA syntheta 41.4 20 0.00068 23.3 2.7 40 27-66 130-177 (186)
69 2fpr_A Histidine biosynthesis 40.6 55 0.0019 20.0 4.6 18 26-43 50-67 (176)
70 2vn2_A DNAD, chromosome replic 40.4 14 0.00048 22.4 1.8 47 21-68 32-83 (128)
71 2ebn_A Endo-beta-N-acetylgluco 40.3 33 0.0011 24.3 3.9 39 26-64 76-122 (289)
72 2p9j_A Hypothetical protein AQ 40.2 37 0.0013 20.0 3.6 25 21-45 39-63 (162)
73 2f9y_A Acetyl-COA carboxylase, 39.9 31 0.0011 24.9 3.8 35 14-49 155-190 (339)
74 2a67_A Isochorismatase family 39.3 44 0.0015 20.8 4.0 27 15-41 25-51 (167)
75 3e61_A Putative transcriptiona 39.3 52 0.0018 20.7 4.5 39 26-64 77-121 (277)
76 1p6r_A Penicillinase repressor 39.1 16 0.00055 19.9 1.7 19 50-68 41-59 (82)
77 3dmy_A Protein FDRA; predicted 38.9 50 0.0017 25.0 4.9 22 25-47 51-72 (480)
78 3lqy_A Putative isochorismatas 38.8 50 0.0017 21.0 4.3 27 15-41 32-58 (190)
79 2vk2_A YTFQ, ABC transporter p 38.3 70 0.0024 20.6 5.0 39 26-64 75-124 (306)
80 3kke_A LACI family transcripti 38.3 69 0.0024 20.7 5.0 38 26-64 87-130 (303)
81 1y81_A Conserved hypothetical 38.1 55 0.0019 20.0 4.3 29 24-52 83-111 (138)
82 3bbn_B Ribosomal protein S2; s 38.1 15 0.0005 25.5 1.7 20 22-41 168-187 (231)
83 1k77_A EC1530, hypothetical pr 38.0 75 0.0026 20.0 6.8 28 18-45 82-109 (260)
84 2k4b_A Transcriptional regulat 37.8 18 0.00063 21.4 2.0 19 50-68 67-85 (99)
85 3d8u_A PURR transcriptional re 37.8 66 0.0023 20.2 4.7 39 26-64 74-119 (275)
86 3bch_A 40S ribosomal protein S 37.7 17 0.00057 25.8 2.0 21 21-41 161-181 (253)
87 1xim_A D-xylose isomerase; iso 37.3 65 0.0022 22.6 5.0 23 21-43 116-138 (393)
88 1x0u_A Hypothetical methylmalo 37.3 42 0.0014 25.6 4.3 33 14-47 341-374 (522)
89 1j2r_A Hypothetical isochorism 37.2 56 0.0019 20.7 4.4 27 15-41 40-66 (199)
90 3egc_A Putative ribose operon 37.2 45 0.0015 21.3 3.9 40 25-64 78-124 (291)
91 3h75_A Periplasmic sugar-bindi 37.1 77 0.0026 20.9 5.2 42 23-64 75-137 (350)
92 2jtq_A Phage shock protein E; 37.0 32 0.0011 18.6 2.8 23 22-45 53-75 (85)
93 2bzr_A Propionyl-COA carboxyla 36.9 1.3E+02 0.0046 23.0 7.1 34 14-48 363-397 (548)
94 3bbl_A Regulatory protein of L 36.3 83 0.0028 20.1 5.5 39 26-64 79-124 (287)
95 1a0c_A Xylose isomerase; ketol 36.3 76 0.0026 23.3 5.5 21 24-44 170-190 (438)
96 1wjo_A T-plastin; CH domain, a 36.3 41 0.0014 21.1 3.5 24 14-37 65-88 (124)
97 3mmz_A Putative HAD family hyd 36.2 37 0.0013 20.8 3.3 23 22-44 43-65 (176)
98 3obe_A Sugar phosphate isomera 36.2 72 0.0025 21.3 5.0 23 19-41 112-134 (305)
99 3l8h_A Putative haloacid dehal 36.0 68 0.0023 19.0 5.4 20 25-44 34-53 (179)
100 3cf4_G Acetyl-COA decarboxylas 35.8 19 0.00066 22.7 1.9 18 25-42 53-70 (170)
101 2fep_A Catabolite control prot 35.8 86 0.0029 20.1 5.5 39 26-64 87-132 (289)
102 3bzy_B ESCU; auto cleavage pro 35.7 27 0.00091 20.5 2.4 16 23-38 29-44 (83)
103 1i60_A IOLI protein; beta barr 35.7 83 0.0028 19.8 6.5 25 20-44 83-107 (278)
104 2ioj_A Hypothetical protein AF 35.6 15 0.00051 22.3 1.3 18 23-40 87-104 (139)
105 1sd4_A Penicillinase repressor 35.5 19 0.00065 20.7 1.7 19 50-68 42-60 (126)
106 2jt1_A PEFI protein; solution 35.5 6.4 0.00022 22.8 -0.4 46 22-68 5-56 (77)
107 4axv_A MPAA; hydrolase; HET: M 35.4 52 0.0018 21.6 4.1 35 28-62 203-238 (243)
108 2r8e_A 3-deoxy-D-manno-octulos 35.3 34 0.0012 21.1 3.0 24 22-45 57-80 (188)
109 3kio_A Ribonuclease H2 subunit 35.2 30 0.001 24.9 3.1 45 5-52 167-218 (301)
110 1rjd_A PPM1P, carboxy methyl t 35.1 49 0.0017 23.3 4.1 39 16-54 75-117 (334)
111 2y8v_A CHIC, class III chitina 34.9 58 0.002 22.2 4.4 38 27-64 78-124 (290)
112 3tg2_A Vibriobactin-specific i 34.9 40 0.0014 22.4 3.5 27 16-42 51-77 (223)
113 3tdu_C Cullin-1, CUL-1; E2:E3, 34.8 20 0.00067 20.8 1.7 23 45-68 43-65 (77)
114 3kws_A Putative sugar isomeras 34.6 92 0.0032 20.1 6.2 23 21-43 104-126 (287)
115 3n07_A 3-deoxy-D-manno-octulos 34.5 28 0.00097 22.2 2.6 22 22-43 56-77 (195)
116 1yx1_A Hypothetical protein PA 34.5 41 0.0014 21.7 3.4 27 22-48 85-111 (264)
117 4h17_A Hydrolase, isochorismat 34.3 56 0.0019 21.1 4.0 27 15-41 44-70 (197)
118 2f9z_C Protein (chemotaxis met 34.1 43 0.0015 21.8 3.5 30 19-48 102-133 (159)
119 2w43_A Hypothetical 2-haloalka 34.1 33 0.0011 20.5 2.8 21 27-47 156-176 (201)
120 3kxe_C Antitoxin protein PARD- 33.9 28 0.00097 20.6 2.3 23 40-63 22-44 (88)
121 3u0h_A Xylose isomerase domain 33.9 85 0.0029 19.9 4.8 17 24-40 87-103 (281)
122 2iqt_A Fructose-bisphosphate a 33.9 16 0.00055 26.6 1.4 20 32-51 230-249 (296)
123 1yac_A Ycacgp, YCAC gene produ 33.6 57 0.002 21.1 4.0 26 16-41 33-58 (208)
124 2frh_A SARA, staphylococcal ac 33.6 38 0.0013 19.8 2.9 19 50-68 67-85 (127)
125 2d59_A Hypothetical protein PH 33.6 43 0.0015 20.5 3.3 27 24-50 91-117 (144)
126 3cwc_A Putative glycerate kina 33.4 28 0.00094 25.9 2.7 17 26-42 311-327 (383)
127 1vrg_A Propionyl-COA carboxyla 33.3 1.1E+02 0.0038 23.3 6.0 35 13-48 345-380 (527)
128 3uug_A Multiple sugar-binding 33.1 99 0.0034 20.0 5.2 38 25-62 75-121 (330)
129 2vqe_B 30S ribosomal protein S 33.0 18 0.0006 25.5 1.5 20 22-41 169-188 (256)
130 3r8n_B 30S ribosomal protein S 33.0 16 0.00054 25.1 1.2 21 21-41 159-179 (218)
131 2yv1_A Succinyl-COA ligase [AD 32.8 69 0.0024 22.1 4.5 25 24-48 84-108 (294)
132 1xpj_A Hypothetical protein; s 32.8 62 0.0021 19.0 3.8 29 19-47 25-53 (126)
133 1xla_A D-xylose isomerase; iso 32.6 1.3E+02 0.0043 21.1 6.5 23 21-43 116-138 (394)
134 1cjy_A CPLA2, protein (cytosol 32.5 53 0.0018 26.2 4.3 32 34-67 186-219 (749)
135 3e58_A Putative beta-phosphogl 32.4 37 0.0013 19.8 2.7 22 27-48 175-196 (214)
136 3brq_A HTH-type transcriptiona 32.0 96 0.0033 19.5 5.5 39 26-64 92-138 (296)
137 2dk5_A DNA-directed RNA polyme 32.0 23 0.0008 20.7 1.7 19 50-68 50-68 (91)
138 3kbb_A Phosphorylated carbohyd 32.0 44 0.0015 20.2 3.1 22 27-48 170-191 (216)
139 2yv2_A Succinyl-COA synthetase 31.7 73 0.0025 22.0 4.5 25 24-48 85-109 (297)
140 3ksm_A ABC-type sugar transpor 31.6 95 0.0032 19.3 5.3 40 24-63 74-121 (276)
141 3mcw_A Putative hydrolase; iso 31.6 37 0.0013 21.8 2.8 25 17-41 35-59 (198)
142 2x7v_A Probable endonuclease 4 31.6 1E+02 0.0035 19.6 5.8 39 22-60 90-129 (287)
143 2wmf_A Fucolectin-related prot 31.5 34 0.0011 27.2 3.0 23 25-47 103-127 (581)
144 2rgy_A Transcriptional regulat 31.3 1E+02 0.0035 19.6 5.0 39 26-64 82-127 (290)
145 3fnd_A Chitinase; TIM-barrel, 31.3 1.1E+02 0.0037 20.9 5.3 40 25-64 56-104 (312)
146 3hxk_A Sugar hydrolase; alpha- 31.1 28 0.00096 21.7 2.1 31 34-64 42-73 (276)
147 3mu7_A XAIP-II, xylanase and a 31.1 62 0.0021 22.7 4.1 36 26-61 59-100 (273)
148 1iuk_A Hypothetical protein TT 31.1 33 0.0011 21.0 2.4 27 25-51 85-111 (140)
149 1im5_A 180AA long hypothetical 31.1 44 0.0015 20.9 3.0 25 17-41 27-51 (180)
150 3vqt_A RF-3, peptide chain rel 31.0 23 0.00078 26.7 1.9 25 17-41 135-159 (548)
151 3ij5_A 3-deoxy-D-manno-octulos 30.9 45 0.0015 21.6 3.1 22 22-43 80-101 (211)
152 3aam_A Endonuclease IV, endoiv 30.9 79 0.0027 20.2 4.3 23 23-45 90-112 (270)
153 3maj_A DNA processing chain A; 30.9 65 0.0022 23.8 4.3 31 23-55 169-203 (382)
154 2hsg_A Glucose-resistance amyl 30.7 1E+02 0.0036 20.1 5.0 39 26-64 131-176 (332)
155 2kg4_A Growth arrest and DNA-d 30.6 37 0.0013 22.6 2.7 16 25-40 77-92 (165)
156 3g1w_A Sugar ABC transporter; 30.6 1.1E+02 0.0036 19.6 5.4 38 26-63 78-123 (305)
157 3iei_A Leucine carboxyl methyl 30.6 66 0.0023 22.9 4.2 38 16-53 67-109 (334)
158 2vt1_B Surface presentation of 30.3 36 0.0012 20.5 2.4 18 22-39 28-45 (93)
159 2b34_A F35G2.2, MAR1 ribonucle 30.2 71 0.0024 20.6 4.0 26 16-41 33-58 (199)
160 3pp8_A Glyoxylate/hydroxypyruv 30.2 32 0.0011 24.2 2.4 33 30-62 83-115 (315)
161 1nnl_A L-3-phosphoserine phosp 30.1 38 0.0013 20.7 2.5 19 25-43 93-111 (225)
162 2zkq_b 40S ribosomal protein S 30.1 20 0.00069 25.9 1.4 21 21-41 128-148 (295)
163 3kl9_A PEPA, glutamyl aminopep 30.1 61 0.0021 23.0 4.0 26 25-51 273-298 (355)
164 1x92_A APC5045, phosphoheptose 30.1 36 0.0012 21.2 2.5 29 15-43 121-149 (199)
165 3oqp_A Putative isochorismatas 29.8 55 0.0019 21.5 3.5 27 15-41 29-55 (211)
166 1xn7_A Hypothetical protein YH 29.8 23 0.0008 20.3 1.4 19 50-68 30-48 (78)
167 3dbi_A Sugar-binding transcrip 29.7 1.2E+02 0.0041 19.9 6.0 41 24-64 133-180 (338)
168 3kl2_A Putative isochorismatas 29.7 47 0.0016 21.9 3.1 25 17-41 55-79 (226)
169 2zds_A Putative DNA-binding pr 29.7 96 0.0033 20.4 4.7 24 22-45 112-135 (340)
170 3hu5_A Isochorismatase family 29.6 53 0.0018 21.1 3.3 26 16-41 32-57 (204)
171 4fn5_A EF-G 1, elongation fact 29.6 19 0.00066 27.7 1.3 26 16-41 119-144 (709)
172 1bxb_A Xylose isomerase; xylos 29.6 46 0.0016 23.3 3.2 21 23-43 118-138 (387)
173 3clk_A Transcription regulator 29.5 94 0.0032 19.8 4.5 39 26-64 80-124 (290)
174 3qxc_A Dethiobiotin synthetase 29.5 91 0.0031 20.9 4.6 38 24-63 151-188 (242)
175 2bdq_A Copper homeostasis prot 29.4 96 0.0033 21.4 4.8 35 30-64 50-89 (224)
176 3u9r_B MCC beta, methylcrotony 29.4 31 0.0011 26.8 2.4 25 21-45 143-169 (555)
177 3umb_A Dehalogenase-like hydro 29.3 34 0.0012 20.7 2.2 22 27-48 185-206 (233)
178 3v7e_A Ribosome-associated pro 29.2 38 0.0013 19.2 2.3 20 22-41 41-60 (82)
179 2yva_A DNAA initiator-associat 29.2 38 0.0013 21.0 2.5 31 14-44 116-146 (196)
180 3sho_A Transcriptional regulat 29.2 44 0.0015 20.4 2.8 29 15-43 95-123 (187)
181 2xzm_B RPS0E; ribosome, transl 29.1 23 0.00078 24.8 1.5 21 22-42 125-145 (241)
182 1l7m_A Phosphoserine phosphata 29.1 32 0.0011 20.3 2.0 21 24-44 82-102 (211)
183 4hlb_A Uncharacterized protein 29.1 37 0.0013 21.1 2.3 36 32-67 50-87 (115)
184 2o20_A Catabolite control prot 29.1 1.2E+02 0.004 19.9 5.0 39 26-64 134-179 (332)
185 3ot4_A Putative isochorismatas 29.0 49 0.0017 22.2 3.2 26 16-41 67-92 (236)
186 3ebv_A Chinitase A; chitinase 29.0 73 0.0025 22.1 4.1 39 27-65 68-112 (302)
187 3iav_A Propionyl-COA carboxyla 29.0 31 0.0011 26.5 2.4 25 21-45 119-144 (530)
188 1jx6_A LUXP protein; protein-l 28.9 1.1E+02 0.0038 20.0 4.9 38 26-63 120-171 (342)
189 3iav_A Propionyl-COA carboxyla 28.9 1.4E+02 0.0048 22.9 6.0 37 13-50 347-384 (530)
190 3bjr_A Putative carboxylestera 28.8 64 0.0022 20.2 3.5 30 34-63 49-79 (283)
191 1nf9_A Phenazine biosynthesis 28.8 52 0.0018 21.1 3.2 26 17-42 53-78 (207)
192 1x0u_A Hypothetical methylmalo 28.7 32 0.0011 26.2 2.4 24 21-44 113-137 (522)
193 3god_A CAS1; crispr, metallonu 28.7 37 0.0013 24.2 2.6 19 26-44 74-92 (328)
194 3o1i_D Periplasmic protein TOR 28.6 1E+02 0.0035 19.5 4.5 38 26-64 80-130 (304)
195 3cny_A Inositol catabolism pro 28.6 1.2E+02 0.0041 19.5 6.3 23 21-43 90-112 (301)
196 1okr_A MECI, methicillin resis 28.6 25 0.00085 20.1 1.4 19 50-68 42-60 (123)
197 8abp_A L-arabinose-binding pro 28.4 35 0.0012 21.9 2.2 39 25-63 73-124 (306)
198 1hzm_A Dual specificity protei 28.3 30 0.001 20.7 1.8 22 24-46 116-137 (154)
199 2xhz_A KDSD, YRBH, arabinose 5 28.3 51 0.0017 20.0 2.9 32 14-45 103-134 (183)
200 1sfx_A Conserved hypothetical 28.2 28 0.00094 19.0 1.5 19 50-68 48-66 (109)
201 3n6r_B Propionyl-COA carboxyla 28.2 34 0.0011 26.4 2.4 27 21-47 127-155 (531)
202 2wm8_A MDP-1, magnesium-depend 28.2 44 0.0015 20.3 2.6 20 25-44 75-94 (187)
203 2fq1_A Isochorismatase; ENTB, 28.0 77 0.0026 21.4 4.0 26 17-42 56-81 (287)
204 1oi7_A Succinyl-COA synthetase 28.0 94 0.0032 21.3 4.5 25 24-48 78-102 (288)
205 4axn_A Chitinase C1; hydrolase 27.8 1.5E+02 0.005 20.3 6.7 51 11-65 77-132 (328)
206 1wvf_A 4-cresol dehydrogenase 27.7 39 0.0013 25.0 2.6 19 25-44 71-89 (520)
207 3irv_A Cysteine hydrolase; str 27.6 52 0.0018 21.8 3.0 26 16-41 46-71 (233)
208 3txv_A Probable tagatose 6-pho 27.6 1.5E+02 0.0051 22.5 5.9 40 24-63 35-81 (450)
209 2k02_A Ferrous iron transport 27.5 28 0.00096 20.6 1.5 19 50-68 30-48 (87)
210 1te2_A Putative phosphatase; s 27.5 42 0.0014 19.9 2.4 22 27-48 180-201 (226)
211 1on3_A Methylmalonyl-COA carbo 27.4 34 0.0011 26.2 2.3 24 21-44 117-141 (523)
212 3tb6_A Arabinose metabolism tr 27.4 43 0.0015 21.2 2.5 40 25-64 90-136 (298)
213 3lfx_A Uncharacterized protein 27.4 48 0.0016 23.3 3.0 20 26-45 50-69 (319)
214 2dsk_A Chitinase; catalytic do 27.3 83 0.0029 22.4 4.2 40 26-65 66-111 (311)
215 2bzr_A Propionyl-COA carboxyla 27.2 35 0.0012 26.3 2.4 24 21-44 130-154 (548)
216 3u5c_A 40S ribosomal protein S 27.2 30 0.001 24.4 1.9 21 21-41 127-147 (252)
217 3vay_A HAD-superfamily hydrola 27.2 52 0.0018 19.8 2.8 21 27-47 186-206 (230)
218 1eok_A Endo-beta-N-acetylgluco 27.1 65 0.0022 21.8 3.5 39 27-65 72-119 (290)
219 1vrg_A Propionyl-COA carboxyla 27.1 34 0.0012 26.1 2.3 29 20-48 119-149 (527)
220 3t7y_A YOP proteins translocat 27.1 33 0.0011 20.8 1.8 17 22-38 43-59 (97)
221 2x4d_A HLHPP, phospholysine ph 27.1 49 0.0017 20.4 2.7 20 27-46 221-240 (271)
222 3o2p_E Cell division control p 26.8 32 0.0011 20.5 1.7 23 45-68 55-77 (88)
223 2xbl_A Phosphoheptose isomeras 26.7 45 0.0015 20.5 2.5 21 23-43 132-152 (198)
224 3ff4_A Uncharacterized protein 26.7 56 0.0019 19.9 2.9 20 25-45 73-92 (122)
225 3n6r_B Propionyl-COA carboxyla 26.6 1.6E+02 0.0055 22.6 5.9 36 13-49 353-389 (531)
226 1tk9_A Phosphoheptose isomeras 26.5 44 0.0015 20.4 2.4 19 24-42 127-145 (188)
227 2j0p_A HEMS, hemin transport p 26.5 55 0.0019 23.8 3.2 43 1-43 192-249 (345)
228 2g5g_X Putative lipoprotein; c 26.4 40 0.0014 23.5 2.4 15 26-40 126-140 (268)
229 4a7w_A Uridylate kinase; trans 26.4 44 0.0015 22.3 2.5 19 26-44 38-56 (240)
230 2g9w_A Conserved hypothetical 26.3 33 0.0011 20.5 1.7 19 50-68 42-60 (138)
231 3da8_A Probable 5'-phosphoribo 26.3 15 0.0005 24.9 0.1 19 22-40 48-66 (215)
232 3c01_E Surface presentation of 26.3 35 0.0012 20.7 1.8 17 23-39 29-45 (98)
233 3ek6_A Uridylate kinase; UMPK 26.2 48 0.0017 22.2 2.7 20 26-45 40-59 (243)
234 4ac1_X Endo-N-acetyl-beta-D-gl 26.2 1.2E+02 0.0043 20.6 4.9 18 27-44 68-85 (283)
235 3j20_B 30S ribosomal protein S 26.1 25 0.00084 23.9 1.2 21 21-41 121-141 (202)
236 2xvc_A ESCRT-III, SSO0910; cel 26.0 39 0.0013 19.2 1.9 18 50-67 39-56 (59)
237 1ur3_M Hypothetical oxidoreduc 26.0 67 0.0023 22.1 3.5 20 26-45 216-237 (319)
238 1tjy_A Sugar transport protein 26.0 40 0.0014 22.2 2.2 38 25-62 76-122 (316)
239 1m3s_A Hypothetical protein YC 25.9 55 0.0019 20.0 2.8 24 21-44 93-116 (186)
240 3fm5_A Transcriptional regulat 25.8 40 0.0014 19.7 2.0 19 50-68 68-86 (150)
241 1jeo_A MJ1247, hypothetical pr 25.8 52 0.0018 20.0 2.6 20 24-43 99-118 (180)
242 3l49_A ABC sugar (ribose) tran 25.7 48 0.0016 21.0 2.5 39 24-62 76-120 (291)
243 3ngf_A AP endonuclease, family 25.6 1.4E+02 0.0046 19.2 6.6 25 19-43 91-115 (269)
244 3n12_A Chitinase A, chinctu2; 25.4 1.1E+02 0.0036 21.4 4.5 39 26-64 64-108 (333)
245 1uvq_C Orexin; immunology, MHC 25.4 30 0.001 17.4 1.2 13 33-45 11-23 (33)
246 3r0a_A Putative transcriptiona 25.3 32 0.0011 20.5 1.5 49 19-68 24-74 (123)
247 3gf3_A Glutaconyl-COA decarbox 25.3 62 0.0021 25.3 3.5 25 21-45 128-153 (588)
248 1tbx_A ORF F-93, hypothetical 25.3 37 0.0013 18.8 1.7 19 50-68 40-58 (99)
249 3ib6_A Uncharacterized protein 25.0 63 0.0022 19.7 2.9 21 25-45 41-61 (189)
250 3l23_A Sugar phosphate isomera 24.9 1.5E+02 0.0053 19.6 7.0 28 17-44 104-131 (303)
251 2csu_A 457AA long hypothetical 24.9 88 0.003 22.9 4.1 24 24-47 78-101 (457)
252 4gxt_A A conserved functionall 24.9 39 0.0013 24.3 2.2 21 24-44 227-247 (385)
253 1iow_A DD-ligase, DDLB, D-ALA\ 24.9 1E+02 0.0034 19.9 4.0 27 38-64 5-34 (306)
254 3rkx_A Biotin-[acetyl-COA-carb 24.8 30 0.001 24.4 1.5 39 4-46 19-59 (323)
255 1on3_A Methylmalonyl-COA carbo 24.8 96 0.0033 23.6 4.4 33 13-46 341-374 (523)
256 2lbw_A H/ACA ribonucleoprotein 24.7 56 0.0019 19.8 2.6 17 25-41 54-70 (121)
257 4eg0_A D-alanine--D-alanine li 24.7 97 0.0033 20.6 4.0 14 37-50 15-28 (317)
258 2ztj_A Homocitrate synthase; ( 24.7 1.9E+02 0.0065 20.6 5.8 44 11-54 104-149 (382)
259 3mwd_B ATP-citrate synthase; A 24.6 73 0.0025 22.8 3.5 24 25-48 95-118 (334)
260 1muw_A Xylose isomerase; atomi 24.3 1.8E+02 0.0062 20.1 5.9 23 21-43 116-138 (386)
261 3qgm_A P-nitrophenyl phosphata 24.3 76 0.0026 20.0 3.3 25 21-45 27-51 (268)
262 1f75_A Undecaprenyl pyrophosph 24.3 1.2E+02 0.0041 21.0 4.5 22 21-42 51-72 (249)
263 3bro_A Transcriptional regulat 24.3 39 0.0013 19.3 1.7 19 50-68 64-82 (141)
264 1q92_A 5(3)-deoxyribonucleotid 24.1 1.3E+02 0.0043 18.3 4.7 22 25-46 82-104 (197)
265 2o2x_A Hypothetical protein; s 24.1 1.1E+02 0.0039 18.9 4.1 20 25-44 63-82 (218)
266 2fea_A 2-hydroxy-3-keto-5-meth 24.0 48 0.0016 20.8 2.2 19 25-43 84-102 (236)
267 4g9p_A 4-hydroxy-3-methylbut-2 24.0 27 0.00094 26.4 1.2 27 21-47 124-151 (406)
268 2b9s_B DNA topoisomerase I-lik 24.0 39 0.0013 19.4 1.6 15 24-38 26-40 (62)
269 1yxo_A 4-hydroxythreonine-4-ph 23.9 2.1E+02 0.0071 20.7 6.6 53 13-65 174-237 (328)
270 3i28_A Epoxide hydrolase 2; ar 23.8 1.7E+02 0.0058 19.7 5.2 21 25-45 107-127 (555)
271 3jyw_G 60S ribosomal protein L 23.8 35 0.0012 21.1 1.5 17 25-41 59-75 (113)
272 3m9w_A D-xylose-binding peripl 23.7 45 0.0015 21.6 2.1 40 25-64 74-122 (313)
273 3tgn_A ADC operon repressor AD 23.6 47 0.0016 19.1 2.0 46 21-68 38-83 (146)
274 3hsr_A HTH-type transcriptiona 23.3 41 0.0014 19.5 1.7 19 50-68 64-82 (140)
275 3fde_A E3 ubiquitin-protein li 23.2 38 0.0013 23.4 1.8 13 36-48 46-58 (212)
276 4ap9_A Phosphoserine phosphata 23.2 62 0.0021 18.8 2.5 20 25-44 86-105 (201)
277 2qhs_A Lipoyltransferase; glob 23.2 43 0.0015 22.5 2.0 18 27-44 80-97 (237)
278 3h35_A Uncharacterized protein 23.1 93 0.0032 20.7 3.6 45 23-67 58-120 (185)
279 3h5t_A Transcriptional regulat 22.9 95 0.0033 20.7 3.7 39 26-64 143-188 (366)
280 3p9x_A Phosphoribosylglycinami 22.8 46 0.0016 22.4 2.1 23 23-45 41-63 (211)
281 3ewb_X 2-isopropylmalate synth 22.8 1.9E+02 0.0065 19.9 6.0 42 11-52 111-152 (293)
282 2h0a_A TTHA0807, transcription 22.7 60 0.002 20.4 2.5 39 26-64 70-113 (276)
283 3ech_A MEXR, multidrug resista 22.7 47 0.0016 19.2 1.9 17 52-68 67-83 (142)
284 4hbl_A Transcriptional regulat 22.7 53 0.0018 19.3 2.1 19 50-68 69-87 (149)
285 1e4e_A Vancomycin/teicoplanin 22.6 51 0.0018 22.4 2.3 14 38-51 6-19 (343)
286 3jw4_A Transcriptional regulat 22.5 41 0.0014 19.6 1.6 18 51-68 72-89 (148)
287 3q0b_X Histone-lysine N-methyl 22.5 38 0.0013 22.3 1.6 11 38-48 48-58 (167)
288 3um9_A Haloacid dehalogenase, 22.4 61 0.0021 19.4 2.4 21 27-47 182-202 (230)
289 1lqa_A TAS protein; TIM barrel 22.4 82 0.0028 21.5 3.4 21 24-44 217-239 (346)
290 3pv9_D Putative uncharacterize 22.4 60 0.002 22.9 2.7 20 26-45 52-71 (322)
291 3f9r_A Phosphomannomutase; try 22.3 80 0.0027 20.6 3.2 26 21-46 24-49 (246)
292 2f9y_B Acetyl-coenzyme A carbo 22.3 44 0.0015 23.6 2.0 29 20-48 139-169 (304)
293 3bil_A Probable LACI-family tr 22.3 1.5E+02 0.005 19.7 4.6 39 26-64 137-183 (348)
294 2fvy_A D-galactose-binding per 22.3 58 0.002 20.7 2.4 38 25-62 75-125 (309)
295 3c3k_A Alanine racemase; struc 22.3 1.6E+02 0.0054 18.7 5.4 38 26-64 79-123 (285)
296 1z91_A Organic hydroperoxide r 22.2 50 0.0017 19.0 1.9 45 22-68 41-86 (147)
297 1pzm_A HGPRT, hypoxanthine-gua 22.1 1.2E+02 0.0042 19.6 4.1 54 2-57 15-79 (211)
298 2nu8_A Succinyl-COA ligase [AD 22.1 1.4E+02 0.0048 20.3 4.5 25 24-48 78-102 (288)
299 3ivs_A Homocitrate synthase, m 22.1 1.3E+02 0.0044 22.3 4.6 44 11-54 141-184 (423)
300 2xzm_U Ribosomal protein L7AE 22.0 76 0.0026 19.6 2.9 17 24-40 57-73 (126)
301 1pjq_A CYSG, siroheme synthase 21.9 1.1E+02 0.0037 22.3 4.1 46 16-61 79-147 (457)
302 3kd3_A Phosphoserine phosphohy 21.9 68 0.0023 18.8 2.5 19 25-43 89-107 (219)
303 3qxb_A Putative xylose isomera 21.7 1.8E+02 0.0061 19.1 5.0 21 24-44 117-137 (316)
304 4b8x_A SCO5413, possible MARR- 21.7 46 0.0016 19.9 1.7 19 50-68 65-83 (147)
305 2lpm_A Two-component response 21.6 31 0.0011 20.9 0.9 20 26-47 71-90 (123)
306 2fbi_A Probable transcriptiona 21.6 43 0.0015 19.1 1.5 19 50-68 64-82 (142)
307 2aif_A Ribosomal protein L7A; 21.5 79 0.0027 19.6 2.9 17 24-40 74-90 (135)
308 3noy_A 4-hydroxy-3-methylbut-2 21.5 1.1E+02 0.0039 22.7 4.1 38 22-59 121-168 (366)
309 3oop_A LIN2960 protein; protei 21.3 48 0.0016 19.1 1.7 19 50-68 65-83 (143)
310 3btn_A Antizyme inhibitor 1; T 21.3 1.4E+02 0.0049 21.5 4.6 22 24-45 216-238 (448)
311 3eco_A MEPR; mutlidrug efflux 21.3 44 0.0015 19.2 1.5 19 50-68 61-79 (139)
312 3smv_A S-(-)-azetidine-2-carbo 21.2 45 0.0015 19.9 1.6 17 27-43 186-202 (240)
313 2c4n_A Protein NAGD; nucleotid 21.2 76 0.0026 19.0 2.7 20 27-46 207-226 (250)
314 3m9l_A Hydrolase, haloacid deh 21.1 80 0.0027 18.8 2.8 19 25-43 77-95 (205)
315 2fbh_A Transcriptional regulat 21.0 45 0.0015 19.1 1.5 19 50-68 66-84 (146)
316 1jgs_A Multiple antibiotic res 21.0 45 0.0015 19.0 1.5 19 50-68 62-80 (138)
317 2yzs_A Putative uncharacterize 20.9 58 0.002 22.9 2.3 21 25-45 49-69 (315)
318 2d89_A EHBP1 protein; all alph 20.9 34 0.0012 20.8 1.0 28 11-38 57-84 (119)
319 1pix_A Glutaconyl-COA decarbox 20.9 69 0.0024 24.9 2.9 28 21-48 127-156 (587)
320 1zcz_A Bifunctional purine bio 20.9 38 0.0013 26.1 1.5 19 21-39 438-456 (464)
321 1pix_A Glutaconyl-COA decarbox 20.9 1.1E+02 0.0038 23.7 4.1 34 13-47 386-420 (587)
322 3av3_A Phosphoribosylglycinami 20.8 56 0.0019 21.6 2.2 22 24-45 43-64 (212)
323 2d0b_A RNAse HIII, ribonucleas 20.8 40 0.0014 24.0 1.5 30 4-33 228-257 (310)
324 2pq0_A Hypothetical conserved 20.7 1E+02 0.0034 19.4 3.3 28 19-46 21-48 (258)
325 1wr8_A Phosphoglycolate phosph 20.7 1.1E+02 0.0037 19.2 3.5 28 19-46 21-48 (231)
326 2rdp_A Putative transcriptiona 20.7 45 0.0015 19.3 1.5 19 50-68 70-88 (150)
327 3nrv_A Putative transcriptiona 20.7 59 0.002 18.8 2.0 47 18-68 37-86 (148)
328 3erp_A Putative oxidoreductase 20.6 31 0.001 24.1 0.8 21 25-45 227-249 (353)
329 2fa5_A Transcriptional regulat 20.6 65 0.0022 18.9 2.3 19 50-68 77-95 (162)
330 3e6m_A MARR family transcripti 20.4 50 0.0017 19.6 1.7 19 50-68 81-99 (161)
331 3nkd_A Crispr-associated prote 20.4 56 0.0019 23.1 2.2 20 26-45 64-83 (305)
332 3mpo_A Predicted hydrolase of 20.4 72 0.0025 20.3 2.6 30 16-45 20-49 (279)
333 3kp7_A Transcriptional regulat 20.3 56 0.0019 19.1 1.9 17 52-68 67-83 (151)
334 3isx_A Endoglucanase; TM1050, 20.2 1.2E+02 0.004 21.6 3.9 27 24-51 271-298 (343)
335 3iz6_A 40S ribosomal protein S 20.2 40 0.0014 24.6 1.4 21 21-41 132-152 (305)
336 3skx_A Copper-exporting P-type 20.2 82 0.0028 19.6 2.8 19 25-43 151-169 (280)
337 2hr3_A Probable transcriptiona 20.1 47 0.0016 19.1 1.5 51 16-68 30-82 (147)
338 3f3x_A Transcriptional regulat 20.1 53 0.0018 19.0 1.7 19 50-68 64-82 (144)
339 2nnn_A Probable transcriptiona 20.1 47 0.0016 18.8 1.5 19 50-68 66-84 (140)
340 3g85_A Transcriptional regulat 20.0 1.7E+02 0.0058 18.4 4.3 37 28-64 85-126 (289)
No 1
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=99.14 E-value=1.5e-10 Score=85.69 Aligned_cols=60 Identities=20% Similarity=0.140 Sum_probs=52.3
Q ss_pred CCCCCCCcc-cccCCHHHHHHHHHHHHHHHHh-CCCCEEEEecCCCccc-hHHHHHHHHHhHH
Q psy8530 2 VHTWMGDQV-DMLEDHLGIIRRDELVFMKARE-RRVPIVMLTSGGYLKQ-TARIIADSILNLA 61 (68)
Q Consensus 2 vD~~~~D~L-~L~lS~~Gi~~RD~~V~~~a~~-~~IPva~v~gGGY~~d-~~~~v~~si~~l~ 61 (68)
+|.|.+|+| +|+||.+|..+++++|+++|.+ .++|++++++|||+.+ ..+.+..-+.-|.
T Consensus 267 ~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~~~~g~vv~vleGGY~~~~l~~~~~~~~~~l~ 329 (369)
T 1zz1_A 267 FDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELT 329 (369)
T ss_dssp CTTBTTCTTCCCBBCHHHHHHHHHHHHHHHHHHSTTCEEEEECCCCCTTTHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhCCCCEEEEECCCCCccHHHHHHHHHHHHHh
Confidence 699999999 9999999999999999999998 7999999999999977 5555555555554
No 2
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=98.72 E-value=1.5e-08 Score=76.01 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=42.3
Q ss_pred CCCCCCCcc-cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCccchHHHHHHHHH
Q psy8530 2 VHTWMGDQV-DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSIL 58 (68)
Q Consensus 2 vD~~~~D~L-~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~d~~~~v~~si~ 58 (68)
+|.|.+|+| .|+||.+|..+++++|++ .++|+++++||||+... +++|-.
T Consensus 266 ~Da~~~DpLg~l~lt~~g~~~~~~~l~~----~~~p~l~~~gGGY~~~~---var~w~ 316 (388)
T 3ew8_A 266 ADTIAGDPMCSFNMTPVGIGKCLKYILQ----WQLATLILGGGGYNLAN---TARCWT 316 (388)
T ss_dssp STTBTTCTTCCCCBCHHHHHHHHHHHHT----TCCEEEEECCCCCSHHH---HHHHHH
T ss_pred ccCCCCCCCCCCcCCHHHHHHHHHHHHh----cCCCEEEEECCCCChhH---HHHHHH
Confidence 699999999 999999999999999875 48999999999997543 355443
No 3
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=98.71 E-value=1.9e-08 Score=74.99 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=42.4
Q ss_pred CCCCCCCcc-cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCccchHHHHHHHHHhH
Q psy8530 2 VHTWMGDQV-DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNL 60 (68)
Q Consensus 2 vD~~~~D~L-~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~d~~~~v~~si~~l 60 (68)
+|.|.+|+| +|+||.+|..++.+ ++++.++|+++++||||+.+ .+++|...+
T Consensus 258 ~Da~~~DpLg~l~Lt~~g~~~~~~----~l~~~~~p~v~v~eGGY~~~---~var~w~~~ 310 (376)
T 4a69_A 258 ADSLGCDRLGCFNLSIRGHGECVE----YVKSFNIPLLVLGGGGYTVR---NVARCWTYE 310 (376)
T ss_dssp GGGBTTCSSCCCBBCHHHHHHHHH----HHHTTCCCEEEECCCCCSHH---HHHHHHHHH
T ss_pred ccCCCCCcccCeecCHHHHHHHHH----HHHHcCCCEEEEECCCCChh---HHHHHHHHH
Confidence 599999999 99999999998865 45667999999999999753 255555443
No 4
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=98.66 E-value=6.4e-08 Score=71.79 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=39.0
Q ss_pred CCCCCCCcc-cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCcc
Q psy8530 2 VHTWMGDQV-DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLK 47 (68)
Q Consensus 2 vD~~~~D~L-~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~ 47 (68)
+|.|.+|+| +|+||.+|..++.++|.++| .|++++++|||+.
T Consensus 257 ~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a----~~vv~vleGGY~~ 299 (375)
T 1c3p_A 257 TDPLLEDYLSKFNLSNVAFLKAFNIVREVF----GEGVYLGGGGYHP 299 (375)
T ss_dssp STTBTTCTTCSCCBCHHHHHHHHHHHHHHH----CSCEEECCCCCCH
T ss_pred ccccCCCCCCCcccCHHHHHHHHHHHHHhc----cceEEEECCCCCh
Confidence 699999999 99999999999999999886 5799999999964
No 5
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=98.63 E-value=3.1e-08 Score=73.76 Aligned_cols=50 Identities=20% Similarity=0.291 Sum_probs=41.2
Q ss_pred CCCCCCCcc-cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCccchHHHHHHHHH
Q psy8530 2 VHTWMGDQV-DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSIL 58 (68)
Q Consensus 2 vD~~~~D~L-~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~d~~~~v~~si~ 58 (68)
+|.|.+|+| .|+||.+|..++ .+++++.++|+++++||||+.. .+++|..
T Consensus 257 ~D~~~~Dplg~~~lt~~g~~~~----~~~~~~~~~p~v~~~eGGY~~~---~var~wt 307 (367)
T 3max_A 257 ADSLSGDRLGCFNLTVKGHAKC----VEVVKTFNLPLLMLGGGGYTIR---NVARCWT 307 (367)
T ss_dssp GGGBTTCSSCCCCBCHHHHHHH----HHHHHTTCCCEEEECCCCCSHH---HHHHHHH
T ss_pred ccCcCCCCCCCeeeCHHHHHHH----HHHHHhcCCCEEEEeCCCCChh---HHHHHHH
Confidence 599999999 999999999875 4566778999999999999753 3555543
No 6
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=98.61 E-value=9e-08 Score=71.27 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=39.0
Q ss_pred CCCCCCCcc-cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCccc
Q psy8530 2 VHTWMGDQV-DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQ 48 (68)
Q Consensus 2 vD~~~~D~L-~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~d 48 (68)
+|.|.+|+| .|+||.+|..+ +.+++++.++|++++++|||+.+
T Consensus 301 ~Da~~~Dplg~l~lt~~~~~~----~~~~l~~~~~~~v~vleGGY~~~ 344 (362)
T 3men_A 301 FDVYRDDPQSQVAVTTDGFGR----LGHLIGALRLPTVIVQEGGYHIE 344 (362)
T ss_dssp STTBTTCTTCCBCBCHHHHHH----HHHHHHTTCCCEEEEECCCCCHH
T ss_pred ccCcCCCCCCCccCCHHHHHH----HHHHHHhhCCCEEEEECCCCCHH
Confidence 699999999 99999999987 67778888999999999999754
No 7
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=98.58 E-value=1e-07 Score=70.38 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=39.6
Q ss_pred CCCCCCCcc-cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCccch
Q psy8530 2 VHTWMGDQV-DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQT 49 (68)
Q Consensus 2 vD~~~~D~L-~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~d~ 49 (68)
+|.|.+|+| .|+||.+|..+ +.+++++.++|++++++|||+.+.
T Consensus 283 ~D~~~~Dplg~~~lt~~~~~~----~~~~l~~~~~~~v~vleGGY~~~~ 327 (341)
T 3q9b_A 283 VDTFEQDPISFFKLTSPDYIT----MGRTIAASGVPLLVVMEGGYGVPE 327 (341)
T ss_dssp CTTBTTCTTCCCBBCTTHHHH----HHHHHHTTSSCEEEEECCCCCCTT
T ss_pred ccccCCCCCCCccCCHHHHHH----HHHHHHHhCCCEEEEECCCCChHH
Confidence 699999999 99999999987 677778889999999999998763
No 8
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=98.38 E-value=3.6e-07 Score=68.37 Aligned_cols=43 Identities=14% Similarity=-0.042 Sum_probs=39.3
Q ss_pred CCCCCC--Ccc-cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCcc
Q psy8530 2 VHTWMG--DQV-DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLK 47 (68)
Q Consensus 2 vD~~~~--D~L-~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~ 47 (68)
+|.|++ |+| +|+||.+|...+.++|.+.| +.|++++++|||+-
T Consensus 289 ~Da~~~d~D~lg~~~lt~~~~~~~~~~l~~~a---~~~~v~vleGGY~~ 334 (413)
T 2vqm_A 289 FDAVEGHPTPLGGYNLSARCFGYLTKQLMGLA---GGRIVLALEGGHDL 334 (413)
T ss_dssp CTTBSSCTTTTCCCCBCHHHHHHHHHHHHTSG---GGCEEEEECCCCCH
T ss_pred hhhcCCCCCCCCCcccCHHHHHHHHHHHHHhc---CCCEEEEeCcCCCh
Confidence 599998 679 99999999999999999886 68999999999964
No 9
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=97.75 E-value=2.8e-05 Score=59.01 Aligned_cols=56 Identities=11% Similarity=0.014 Sum_probs=40.6
Q ss_pred CCCCCCC--cc-cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCccch-HHHHHHHHHhH
Q psy8530 2 VHTWMGD--QV-DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQT-ARIIADSILNL 60 (68)
Q Consensus 2 vD~~~~D--~L-~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~d~-~~~v~~si~~l 60 (68)
+|.|.+| +| +|+||.++...--+.+.+.| +.|++++++|||+-+. .+-+...+..|
T Consensus 318 ~Da~~gD~dpLg~~~lt~~~y~~~~~~l~~~a---~grvv~vlEGGY~l~~l~~~~~a~~~~L 377 (421)
T 2pqp_A 318 FDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLA---GGAVVLALEGGHDLTAICDASEACVAAL 377 (421)
T ss_dssp CTTBTTCCGGGCCCBBCHHHHHHHHHHHTTSG---GGCEEEEECSCCCHHHHHHHHHHHHHHH
T ss_pred cccccccccccCCceeCHHHHHHHHHHHHHHc---CCCEEEEECCCCChHHHHHHHHHHHHHH
Confidence 5999987 99 99999999877665555543 7899999999996432 33333444444
No 10
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=67.63 E-value=4 Score=26.99 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEec-----------CCCcc-------------chHHHHHHHHHhHHHcCCcC
Q psy8530 21 RRDELVFMKARERRVPIVMLTS-----------GGYLK-------------QTARIIADSILNLADLGLIS 67 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~g-----------GGY~~-------------d~~~~v~~si~~l~~~~~~~ 67 (68)
+||- ++|+++|+|+.+++. |=|.. ...+.-..-|+.|.++|++.
T Consensus 126 ~~D~---~~~~k~~L~i~~vI~~~~g~~~d~~~g~y~~~g~~~ns~~~~Gl~v~eA~~~Ii~~L~~~g~~~ 193 (196)
T 2ajg_A 126 QRDY---EFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGE 193 (196)
T ss_dssp HHHH---HHHHHHTCCCCCCBCCTTSSCCCCSSSCCCSCCCBCSSGGGTTCCHHHHHHHHHHHHHHTTSEE
T ss_pred HHHH---HHHHHcCCCceeEEeCCcCcccccccccccCCceEecCcccCCeEHHHHHHHHHHHHHHCCCce
Confidence 5664 678999999999983 22322 23455556677788887754
No 11
>1eke_A Ribonuclease HII; endonuclease, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: MES; 2.00A {Methanocaldococcus jannaschii} SCOP: c.55.3.1
Probab=64.09 E-value=4.7 Score=27.57 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=34.2
Q ss_pred CCCCcccccCCHHHHHH---HHHHHHHHHHhCCCCEEEEecCCCccchH
Q psy8530 5 WMGDQVDMLEDHLGIIR---RDELVFMKARERRVPIVMLTSGGYLKQTA 50 (68)
Q Consensus 5 ~~~D~L~L~lS~~Gi~~---RD~~V~~~a~~~~IPva~v~gGGY~~d~~ 50 (68)
+.+|...+.++.+-|.+ ||+++-++.++.+ -.|=||..|..
T Consensus 146 ~KgD~~~~~VAAASIlAKv~RD~~m~~l~~~yp-----~~gkGY~td~~ 189 (230)
T 1eke_A 146 HKADAKYPVVSAASIIAKAERDEIIDYYKKIYG-----DIGSGYPSDPK 189 (230)
T ss_dssp TTGGGTCHHHHHHHHHHHHHHHHHHHHHHHHTS-----CCTTSSTTSHH
T ss_pred ECcccccHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCCcCCchHH
Confidence 56787888999999998 9999999999885 36899987654
No 12
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Probab=63.93 E-value=9.4 Score=24.20 Aligned_cols=23 Identities=4% Similarity=0.203 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhCCCCEEEEecC
Q psy8530 21 RRDELVFMKARERRVPIVMLTSG 43 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~gG 43 (68)
-||...++.++++|++++++.|.
T Consensus 39 ~~D~~~L~~Lk~~Gi~~~I~Tg~ 61 (168)
T 3ewi_A 39 VKDAIGISLLKKSGIEVRLISER 61 (168)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSS
T ss_pred cCcHHHHHHHHHCCCEEEEEeCc
Confidence 46778999999999999877766
No 13
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=63.76 E-value=20 Score=23.07 Aligned_cols=38 Identities=8% Similarity=0.051 Sum_probs=24.5
Q ss_pred HHHHHHHHHhCCCCEEEEecCCCcc--chHHHHHHHHHhH
Q psy8530 23 DELVFMKARERRVPIVMLTSGGYLK--QTARIIADSILNL 60 (68)
Q Consensus 23 D~~V~~~a~~~~IPva~v~gGGY~~--d~~~~v~~si~~l 60 (68)
=+..++.|.+.|.|.+.+..|.+.. +.+...++.+++|
T Consensus 91 ~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~l 130 (285)
T 1qtw_A 91 FIDEMQRCEQLGLSLLNFHPGSHLMQISEEDCLARIAESI 130 (285)
T ss_dssp HHHHHHHHHHTTCCEEEECCCBCTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 3457899999999999887665533 3344444444444
No 14
>3ian_A Chitinase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 1.75A {Lactococcus lactis subsp}
Probab=62.10 E-value=26 Score=24.46 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=33.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCC-----ccchHHHHHHHHHhHHHcCC
Q psy8530 12 MLEDHLGIIRRDELVFMKARERRVPIVMLTSGGY-----LKQTARIIADSILNLADLGL 65 (68)
Q Consensus 12 L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY-----~~d~~~~v~~si~~l~~~~~ 65 (68)
...+.+++.++ +..|+++|+.|...+||.- +....+....|+.++.++..
T Consensus 61 ~~~~~~~~~~~----i~~~k~~g~kvllsiGG~~~~~~~~~~~r~~f~~~~~~~~~~~g 115 (321)
T 3ian_A 61 YNKTDTEFRAE----ISKLNAEGKSVLIALGGADAHIELKKSQESDFVNEIIRLVDTYG 115 (321)
T ss_dssp SSSCHHHHHHH----HHHHHHTTCEEEEEEEETTCCCCCCGGGHHHHHHHHHHHHHHHC
T ss_pred CcccchhHHHH----HHHHHHCCCEEEEEeccCCCCcccChHHHHHHHHHHHHHHHHhC
Confidence 44566666543 6789999999998887742 22234456677888877643
No 15
>2pc4_A 41 kDa antigen, fructose-bisphosphate aldolase; invasion machinery, structu genomics, PSI, protein structure initiative; 2.40A {Plasmodium falciparum} PDB: 2eph_A 1a5c_A
Probab=60.20 E-value=18 Score=27.07 Aligned_cols=46 Identities=17% Similarity=0.121 Sum_probs=35.5
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCccchHHHHHHHHH
Q psy8530 13 LEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSIL 58 (68)
Q Consensus 13 ~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~d~~~~v~~si~ 58 (68)
.-|.+-|..---.+|+.+---.+|=++.++|||+.+.+..-=..|.
T Consensus 250 k~s~e~vA~~Tv~~L~rtvPpaVpgI~fLSGGqSeeeAt~~LnamN 295 (369)
T 2pc4_A 250 KTTTQDVGFLTVRTLRRTVPPALPGVVFLSGGQSEEEASVNLNSIN 295 (369)
T ss_dssp CCCHHHHHHHHHHHHHHHCCTTSCEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCccCCeeeeCCCCCCHHHHHHHHHHhh
Confidence 4578888888888888888889999999999999876643333333
No 16
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=59.57 E-value=30 Score=25.18 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=42.8
Q ss_pred cCCHHHHHHHHHHHHHHHHh-CCC--CEEEEec-------CC-CccchHHHHHHHHHhHHHcCC
Q psy8530 13 LEDHLGIIRRDELVFMKARE-RRV--PIVMLTS-------GG-YLKQTARIIADSILNLADLGL 65 (68)
Q Consensus 13 ~lS~~Gi~~RD~~V~~~a~~-~~I--Pva~v~g-------GG-Y~~d~~~~v~~si~~l~~~~~ 65 (68)
.+|.|-|.+-=+...+.+++ .|| |-.+|.| || .+++..++|.-.|+.+.++|+
T Consensus 179 ~it~e~i~~~i~~~~~~l~~~fGi~~PrIAV~gLNPHAGE~G~~G~EE~~iI~PAi~~lr~~Gi 242 (334)
T 3lxy_A 179 AITQASLHEVITILDNDLKTKFGITQPQIYVCGLNPHAGEGGHMGHEEIDTIIPALNTLRQQGI 242 (334)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTSCCSSCCEEEECSSGGGGGGGTTCSHHHHTHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCCCCCCCchhHHHHHHHHHHHHHCCC
Confidence 47899999988888888886 888 7777876 24 457778899999999998864
No 17
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=59.00 E-value=32 Score=21.88 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCcc---chHHHHHHHHHhH
Q psy8530 21 RRDELVFMKARERRVPIVMLTSGGYLK---QTARIIADSILNL 60 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~gGGY~~---d~~~~v~~si~~l 60 (68)
++=+..++.|...|.|.+.+..|++.. +.+...+..+.+|
T Consensus 83 ~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~~l 125 (275)
T 3qc0_A 83 DDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVEGI 125 (275)
T ss_dssp HHHHHHHHHHHHTTCSCEEEECBCCCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEeeCCCCCCCcCHHHHHHHHHHHH
Confidence 445568999999999999999887652 3344444444443
No 18
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=57.26 E-value=25 Score=22.40 Aligned_cols=27 Identities=22% Similarity=0.049 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCcc
Q psy8530 21 RRDELVFMKARERRVPIVMLTSGGYLK 47 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~gGGY~~ 47 (68)
++=+..++.|...|.|.+.+..|.+..
T Consensus 76 ~~~~~~i~~A~~lGa~~v~~~~g~~~~ 102 (254)
T 3ayv_A 76 RRLLFGLDRAAELGADRAVFHSGIPHG 102 (254)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCCTT
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCcc
Confidence 344568899999999999887766544
No 19
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=56.59 E-value=30 Score=22.42 Aligned_cols=40 Identities=5% Similarity=0.114 Sum_probs=27.5
Q ss_pred HHHHHHHhCCCCEEEEecC------CC---ccchHHHHHHHHHhHHHcC
Q psy8530 25 LVFMKARERRVPIVMLTSG------GY---LKQTARIIADSILNLADLG 64 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gG------GY---~~d~~~~v~~si~~l~~~~ 64 (68)
-.++.+.+.+||++++-.- .+ ..|.........++|.++|
T Consensus 82 ~~~~~l~~~~iPvV~i~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G 130 (295)
T 3hcw_A 82 PIKQMLIDESMPFIVIGKPTSDIDHQFTHIDNDNILASENLTRHVIEQG 130 (295)
T ss_dssp HHHHHHHHTTCCEEEESCCCSSGGGGSCEEEECHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCEEEECCCCccccCCceEEecCcHHHHHHHHHHHHHcC
Confidence 3567788899999877421 11 1245667788888998875
No 20
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=56.23 E-value=27 Score=22.24 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecCCCccchHHHH-HHHHHhH
Q psy8530 17 LGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARII-ADSILNL 60 (68)
Q Consensus 17 ~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~d~~~~v-~~si~~l 60 (68)
+-..++=+..++.|++.|.|.+.+.+|-+..+..+.+ ..++..+
T Consensus 81 ~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~l~~l 125 (272)
T 2q02_A 81 EEVVKKTEGLLRDAQGVGARALVLCPLNDGTIVPPEVTVEAIKRL 125 (272)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEECCCCSSBCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEccCCCchhHHHHHHHHHHHHH
Confidence 4455666789999999999999887665443332333 4444444
No 21
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=55.28 E-value=21 Score=23.21 Aligned_cols=24 Identities=4% Similarity=-0.147 Sum_probs=18.7
Q ss_pred HHHHHHHHHhCCCCEEEE-ecCCCc
Q psy8530 23 DELVFMKARERRVPIVML-TSGGYL 46 (68)
Q Consensus 23 D~~V~~~a~~~~IPva~v-~gGGY~ 46 (68)
=+..++.|.+.|+|.+.+ +.+||.
T Consensus 90 ~~~~i~~a~~lG~~~v~~~~~~~~~ 114 (294)
T 3vni_A 90 YTDLLKRLYKLDVHLIGGALYSYWP 114 (294)
T ss_dssp HHHHHHHHHHHTCCEEEESTTSCSS
T ss_pred HHHHHHHHHHhCCCeeeccccCCCC
Confidence 345899999999999974 667663
No 22
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Probab=55.07 E-value=9.2 Score=25.49 Aligned_cols=20 Identities=20% Similarity=0.539 Sum_probs=16.2
Q ss_pred HHHHHHHhCCCCEEEEecCCC
Q psy8530 25 LVFMKARERRVPIVMLTSGGY 45 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gGGY 45 (68)
-.+++|+++|+|++++.| |+
T Consensus 148 e~i~~l~~~gi~v~ivSg-g~ 167 (297)
T 4fe3_A 148 NFFGKLQQHGIPVFIFSA-GI 167 (297)
T ss_dssp HHHHHHHHTTCCEEEEEE-EE
T ss_pred HHHHHHHHcCCeEEEEeC-Cc
Confidence 467899999999988765 44
No 23
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=54.94 E-value=24 Score=23.08 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCC--CccchHHHHHHHHHhH
Q psy8530 21 RRDELVFMKARERRVPIVMLTSGG--YLKQTARIIADSILNL 60 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~gGG--Y~~d~~~~v~~si~~l 60 (68)
++=+..++.|.+.|+|.+.+.|+. +..+.+...+..+++|
T Consensus 108 ~~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l 149 (295)
T 3cqj_A 108 EIMRKAIQFAQDVGIRVIQLAGYDVYYQEANNETRRRFRDGL 149 (295)
T ss_dssp HHHHHHHHHHHHHTCCEEEECCCSCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCcCcCHHHHHHHHHHHH
Confidence 344568889999999998766443 2233333344444443
No 24
>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}
Probab=54.87 E-value=17 Score=24.59 Aligned_cols=38 Identities=13% Similarity=0.016 Sum_probs=24.3
Q ss_pred HHHHHHHHHhCCCCEEEEecC--CCc----cchHHHHHHHHHhH
Q psy8530 23 DELVFMKARERRVPIVMLTSG--GYL----KQTARIIADSILNL 60 (68)
Q Consensus 23 D~~V~~~a~~~~IPva~v~gG--GY~----~d~~~~v~~si~~l 60 (68)
=+..++.|.+.|.|.+.+.+| ||. .+.+...++.+++|
T Consensus 109 ~~~~i~~A~~LGa~~vv~~~g~~g~~~~~~~~~~~~~~~~~~~l 152 (333)
T 3ktc_A 109 MHESAGIVRELGANYVKVWPGQDGWDYPFQVSHKNLWKLAVDGM 152 (333)
T ss_dssp HHHHHHHHHHHTCSEEEECCTTCEESSTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCcCCCCcCCHHHHHHHHHHHH
Confidence 345788999999999977766 553 23444444444444
No 25
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=54.44 E-value=35 Score=22.13 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=28.4
Q ss_pred HHHHHHHhCCCCEEEEecCC----C---ccchHHHHHHHHHhHHHcC
Q psy8530 25 LVFMKARERRVPIVMLTSGG----Y---LKQTARIIADSILNLADLG 64 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gGG----Y---~~d~~~~v~~si~~l~~~~ 64 (68)
-.++.+++.+||++++-..- + ..|.........++|.++|
T Consensus 97 ~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G 143 (305)
T 3huu_A 97 PIEHLLNEFKVPYLIVGKSLNYENIIHIDNDNIDAAYQLTQYLYHLG 143 (305)
T ss_dssp HHHHHHHHTTCCEEEESCCCSSTTCCEEECCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCEEEECCCCcccCCcEEEeCHHHHHHHHHHHHHHCC
Confidence 35677888999998774321 1 1356777888888998876
No 26
>1i39_A Ribonuclease HII, RNAse HII; mixed beta sheet, helix-loop-helix, hydrolase; 1.95A {Archaeoglobus fulgidus} SCOP: c.55.3.1 PDB: 1i3a_A 3p83_D*
Probab=53.85 E-value=11 Score=25.87 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=33.2
Q ss_pred CCCCcccccCCHHHHHH---HHHHHHHHHHhCCCCEEEEecCCCccchH
Q psy8530 5 WMGDQVDMLEDHLGIIR---RDELVFMKARERRVPIVMLTSGGYLKQTA 50 (68)
Q Consensus 5 ~~~D~L~L~lS~~Gi~~---RD~~V~~~a~~~~IPva~v~gGGY~~d~~ 50 (68)
..+|...+.++.+-|.+ ||+++-++.++.+ -.|=||..|..
T Consensus 146 ~KgD~~~~~VAAASIlAKv~RD~~m~~l~~~yp-----~~gkGY~tD~~ 189 (225)
T 1i39_A 146 HKADEKYPLVAAASIIAKVEREREIERLKEKFG-----DFGSGYASDPR 189 (225)
T ss_dssp ETGGGTCHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCSSSTTSHH
T ss_pred ecccccchHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCcCCChHH
Confidence 45777778889999988 9999999998885 36789987653
No 27
>2qap_A Fructose-1,6-bisphosphate aldolase; beta barrel, fructose-1,6-bisphosphate teminal tail, lyase; 1.59A {Leishmania mexicana} SCOP: c.1.10.1 PDB: 2qdg_A* 2qdh_A* 1epx_A 1f2j_A
Probab=53.49 E-value=27 Score=26.34 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=32.1
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCccchHH
Q psy8530 13 LEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTAR 51 (68)
Q Consensus 13 ~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~d~~~ 51 (68)
.-|.+-|.+---.+|...--..+|=++.++|||+.+.+.
T Consensus 272 k~s~eevA~~Tv~~L~rtVPpaVpgIvFLSGGqSeeeAt 310 (391)
T 2qap_A 272 TAAPEQVAHYTVMTLARTMPAMLPGVMFLSGGLSEVQAS 310 (391)
T ss_dssp CCCHHHHHHHHHHHHHHHSBTTCCEEEECCTTCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhhcCCCccCeeeeCCCCCCHHHHH
Confidence 457777887777888888888999999999999977664
No 28
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=52.47 E-value=11 Score=26.55 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCCCEEEEe-cCCCc
Q psy8530 21 RRDELVFMKARERRVPIVMLT-SGGYL 46 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~-gGGY~ 46 (68)
++=...++.|.+.++|++++. +||..
T Consensus 143 ~K~~r~ie~A~~~~lPlI~l~dsgGar 169 (285)
T 2f9i_B 143 EKICRIIDYCTENRLPFILFSASGGAR 169 (285)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECSCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCcc
Confidence 444567899999999999888 66664
No 29
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=52.43 E-value=11 Score=22.48 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhCCCCEEEEecC
Q psy8530 22 RDELVFMKARERRVPIVMLTSG 43 (68)
Q Consensus 22 RD~~V~~~a~~~~IPva~v~gG 43 (68)
+|.++++.++++|+|++.+.++
T Consensus 35 ~~~~~l~~l~~~g~~~~i~T~~ 56 (164)
T 3e8m_A 35 SDSAGIFWAHNKGIPVGILTGE 56 (164)
T ss_dssp GGHHHHHHHHHTTCCEEEECSS
T ss_pred ChHHHHHHHHHCCCEEEEEeCC
Confidence 3456899999999999988765
No 30
>1io2_A Ribonuclease HII; endonuclease, hydrolase; 2.00A {Thermococcus kodakarensis} SCOP: c.55.3.1 PDB: 2dfh_A 2dff_A 2dfe_A 1x1p_A
Probab=52.16 E-value=4.4 Score=27.50 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=32.2
Q ss_pred CCCCcccccCCHHHHHH---HHHHHHHHHHhCCCCEEEEecCCCccchH
Q psy8530 5 WMGDQVDMLEDHLGIIR---RDELVFMKARERRVPIVMLTSGGYLKQTA 50 (68)
Q Consensus 5 ~~~D~L~L~lS~~Gi~~---RD~~V~~~a~~~~IPva~v~gGGY~~d~~ 50 (68)
+.+|...+.++.+-|.+ ||+++-++.++.+ -.|=||..|..
T Consensus 132 ~KgD~~~~~VAAASIlAKv~RD~~m~~l~~~y~-----~~g~GY~td~~ 175 (213)
T 1io2_A 132 HKADDIFPVVSAASILAKVTRDRAVEKLKEEYG-----EIGSGYPSDPR 175 (213)
T ss_dssp TTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHS-----CCCSSCTTSHH
T ss_pred eCcccccHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCCcCCchHH
Confidence 45666677888888888 9999999998885 35799987653
No 31
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=52.08 E-value=40 Score=21.39 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=27.2
Q ss_pred HHHHHHhCCCCEEEEecC--C---C---ccchHHHHHHHHHhHHHcC
Q psy8530 26 VFMKARERRVPIVMLTSG--G---Y---LKQTARIIADSILNLADLG 64 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gG--G---Y---~~d~~~~v~~si~~l~~~~ 64 (68)
.++.+.+.+||++++-.- + + ..|.........++|.++|
T Consensus 84 ~~~~l~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G 130 (292)
T 3k4h_A 84 IIQYLHEQNFPFVLIGKPYDRKDEITYVDNDNYTAAREVAEYLISLG 130 (292)
T ss_dssp HHHHHHHTTCCEEEESCCSSCTTTSCEEECCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCEEEECcHHHHHHHHHHHHHCC
Confidence 577888899999876422 1 1 1256667777888888875
No 32
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=51.79 E-value=11 Score=25.50 Aligned_cols=44 Identities=25% Similarity=0.324 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhCCCCEEEEec---------CCCcc-------------chHHHHHHHHHhHHHcCCcC
Q psy8530 21 RRDELVFMKARERRVPIVMLTS---------GGYLK-------------QTARIIADSILNLADLGLIS 67 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~g---------GGY~~-------------d~~~~v~~si~~l~~~~~~~ 67 (68)
+|| |++|+++|+|+.+++. |=|.. +..+.-..-|+.|.++|++.
T Consensus 147 ~~D---~~~~~k~~Lpi~~vi~~~~~~~~~~g~ft~~g~~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~l~ 212 (219)
T 3o0a_A 147 QRD---WEFAKKYDLPIKVVVKPEGAWDFEKGAYEGKGTLVNSDGFDGLDSETAKRKITEWLQDRGLGE 212 (219)
T ss_dssp HHH---HHHHHHHTCCCCCCEECSSCCCTTTCCCCSCCEECSCGGGTTCBHHHHHHHHHHHHHHTTSEE
T ss_pred HHH---HHHHHHcCCCceeeeCCccccccccccccccceEecCCCCCCCCHHHHHHHHHHHHHHCCCee
Confidence 455 5788899999998884 22221 23455556777888888753
No 33
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=51.21 E-value=36 Score=21.62 Aligned_cols=40 Identities=8% Similarity=0.185 Sum_probs=28.1
Q ss_pred HHHHHHHhCCCCEEEEecC----CC---ccchHHHHHHHHHhHHHcC
Q psy8530 25 LVFMKARERRVPIVMLTSG----GY---LKQTARIIADSILNLADLG 64 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gG----GY---~~d~~~~v~~si~~l~~~~ 64 (68)
-.++.+.+.+||++++-.. ++ ..|.........++|.++|
T Consensus 76 ~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G 122 (276)
T 3jy6_A 76 QTVQEILHQQMPVVSVDREMDACPWPQVVTDNFEAAKAATTAFRQQG 122 (276)
T ss_dssp HHHHHHHTTSSCEEEESCCCTTCSSCEEECCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCCEEEEecccCCCCCCEEEEChHHHHHHHHHHHHHcC
Confidence 4567888899999887421 11 2356777888888888875
No 34
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A
Probab=51.21 E-value=25 Score=23.30 Aligned_cols=39 Identities=10% Similarity=0.097 Sum_probs=26.7
Q ss_pred HHHHHHHHhCCCCEEEEecCCCcc-chHHHHHHHHHhHHH
Q psy8530 24 ELVFMKARERRVPIVMLTSGGYLK-QTARIIADSILNLAD 62 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v~gGGY~~-d~~~~v~~si~~l~~ 62 (68)
+..++.|.+.|+|.+.+..|.+.. +.+...++.+++|.+
T Consensus 97 ~~~i~~A~~lGa~~vv~h~g~~~~~~~~~~~~~~~~~l~~ 136 (303)
T 3aal_A 97 RAEIERTEAIGAKQLVLHPGAHVGAGVEAGLRQIIRGLNE 136 (303)
T ss_dssp HHHHHHHHHHTCSEEEECCEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHHH
Confidence 456789999999999887665433 445556666666554
No 35
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=49.61 E-value=45 Score=20.87 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCCCEEEEecCC
Q psy8530 24 ELVFMKARERRVPIVMLTSGG 44 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v~gGG 44 (68)
.-+++.++++|++++.+.++.
T Consensus 56 ~e~L~~L~~~G~~~~ivTn~~ 76 (211)
T 2gmw_A 56 IDAMRELKKMGFALVVVTNQS 76 (211)
T ss_dssp HHHHHHHHHTTCEEEEEEECT
T ss_pred HHHHHHHHHCCCeEEEEECcC
Confidence 346889999999999998775
No 36
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=49.45 E-value=47 Score=21.27 Aligned_cols=39 Identities=18% Similarity=0.127 Sum_probs=27.3
Q ss_pred HHHHHHhCCCCEEEEecC----CC---ccchHHHHHHHHHhHHHcC
Q psy8530 26 VFMKARERRVPIVMLTSG----GY---LKQTARIIADSILNLADLG 64 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gG----GY---~~d~~~~v~~si~~l~~~~ 64 (68)
.++.+++.+||++++-.. ++ ..|.........++|.++|
T Consensus 81 ~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G 126 (288)
T 3gv0_A 81 RVRFMTERNMPFVTHGRSDMGIEHAFHDFDNEAYAYEAVERLAQCG 126 (288)
T ss_dssp HHHHHHHTTCCEEEESCCCSSCCCEEEEECHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhCCCCEEEECCcCCCCCCcEEEeCcHHHHHHHHHHHHHCC
Confidence 467888899999876421 11 1256777788888888876
No 37
>3bv4_A Fructose-bisphosphate aldolase A; lyase, acetylation, glycolysis, phosphoprotein, schiff base; HET: 13P; 1.70A {Oryctolagus cuniculus} PDB: 1ado_A* 1ewd_A 1zai_A* 1zah_A* 1zaj_A* 1zal_A 2ot0_A 2ot1_A* 2qut_A 2quv_A 3lge_A 3tu9_A* 3b8d_A 6ald_A* 1ex5_A 1ewe_A 2quu_A 3dfn_A 3dfo_A 3dfp_A ...
Probab=49.42 E-value=25 Score=26.08 Aligned_cols=41 Identities=22% Similarity=0.165 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEecCCCccchHHHHHHH
Q psy8530 15 DHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADS 56 (68)
Q Consensus 15 S~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~d~~~~v~~s 56 (68)
|++-|.+---.+|+.+--..+|=++.++|||+.+.+. ...+
T Consensus 241 ~~e~va~~Tv~~l~rtvP~aVpgI~fLSGGqS~eeAt-~~Ln 281 (341)
T 3bv4_A 241 SHEEIAMATVTALRRTVPPAVTGVTFLSGGQSEEEAS-INLN 281 (341)
T ss_dssp CHHHHHHHHHHHHHTTSCTTSCEEEECCTTCCHHHHH-HHHH
T ss_pred CHHHHHHHHHHHHhhcCCcccCeeeecCCCCCHHHHH-HHHH
Confidence 4555555555555555566778888999999977664 4444
No 38
>1uax_A Ribonuclease HII, ribonuclease H2; RNA*DNA hybrid ribonucleotidohydrolase, hydrolase; 2.00A {Pyrococcus horikoshii} SCOP: c.55.3.1
Probab=49.07 E-value=5.3 Score=27.28 Aligned_cols=41 Identities=17% Similarity=0.117 Sum_probs=32.3
Q ss_pred CCCCcccccCCHHHHHH---HHHHHHHHHHhCCCCEEEEecCCCccchH
Q psy8530 5 WMGDQVDMLEDHLGIIR---RDELVFMKARERRVPIVMLTSGGYLKQTA 50 (68)
Q Consensus 5 ~~~D~L~L~lS~~Gi~~---RD~~V~~~a~~~~IPva~v~gGGY~~d~~ 50 (68)
+.+|...++++.+-|.+ ||+++-++.++.+ -.|=||..|..
T Consensus 132 ~KgD~~~~~VAAASIlAKv~RD~~m~~l~~~yp-----~~gkGY~td~~ 175 (220)
T 1uax_A 132 HKADAKYEIVSAASIIAKVTRDREIEKLKQKYG-----EFGSGYPSDPR 175 (220)
T ss_dssp TTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCTTSCTTCHH
T ss_pred eccchhhHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCCcCCchHH
Confidence 45666677888888888 9999999999885 36799987653
No 39
>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A
Probab=48.13 E-value=40 Score=23.37 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=30.7
Q ss_pred cccCCHHHHHHHH----HHHHHHHHhCCCC--EEEEecCC-CccchHHHHHHHHHhHHH
Q psy8530 11 DMLEDHLGIIRRD----ELVFMKARERRVP--IVMLTSGG-YLKQTARIIADSILNLAD 62 (68)
Q Consensus 11 ~L~lS~~Gi~~RD----~~V~~~a~~~~IP--va~v~gGG-Y~~d~~~~v~~si~~l~~ 62 (68)
.|+=..+.++++= +..++.|.+.|+| .+.+=.|| |.. .+..+++.+++|.+
T Consensus 128 NL~S~~~e~re~Si~~l~~~l~~a~~lG~~~a~~v~HpG~~~~~-~e~~~~r~~e~l~~ 185 (301)
T 2j6v_A 128 NPGSPDPEVVERSLAELRYSARLLSLLGAEDGVLVLHLGGAYGE-KGKALRRFVENLRG 185 (301)
T ss_dssp CTTCSCHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEECCCCTTC-HHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEECCCcCCCC-HHHHHHHHHHHHhH
Confidence 4443445555332 3456778889998 43333555 665 66777777777754
No 40
>3uqz_A DNA processing protein DPRA; SAM and rossmann fold, DNA processing protein A, DNA binding; HET: DNA SO4; 2.70A {Streptococcus pneumoniae}
Probab=47.99 E-value=33 Score=24.48 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCCCCEEEEecCC----CccchHHHH
Q psy8530 23 DELVFMKARERRVPIVMLTSGG----YLKQTARII 53 (68)
Q Consensus 23 D~~V~~~a~~~~IPva~v~gGG----Y~~d~~~~v 53 (68)
|...-+.|.+.+-|+++|+|+| |.++...+.
T Consensus 147 D~~AH~~aL~~~g~TIaVl~~Gld~~YP~~n~~L~ 181 (288)
T 3uqz_A 147 DTAAHMAALQNGGKTIAVIGTGLDVFYPKANKRLQ 181 (288)
T ss_dssp HHHHHHHHHHHTCCEEEECSSCTTCCSSGGGHHHH
T ss_pred HHHHHHHHHhcCCCEEEEecccccccCchhhHHHH
Confidence 6667778889999999999999 667777764
No 41
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=47.70 E-value=38 Score=21.86 Aligned_cols=39 Identities=8% Similarity=0.025 Sum_probs=27.2
Q ss_pred HHHHHHhCCCCEEEEecCCC-----------ccchHHHHHHHHHhHHHcC
Q psy8530 26 VFMKARERRVPIVMLTSGGY-----------LKQTARIIADSILNLADLG 64 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gGGY-----------~~d~~~~v~~si~~l~~~~ 64 (68)
.++.+++.+||++++-..-- ..|.........++|.+++
T Consensus 78 ~~~~~~~~giPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g 127 (297)
T 3rot_A 78 SLQRANKLNIPVIAVDTRPKDKTKNPYLVFLGSDNLLAGKKLGEKALELT 127 (297)
T ss_dssp HHHHHHHHTCCEEEESCCCSCTTTSCCSCEEECCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCCEEEEcCCCccccccCcceEEccChHHHHHHHHHHHHHhc
Confidence 56788889999998742211 1356667777888888876
No 42
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=47.68 E-value=43 Score=22.20 Aligned_cols=40 Identities=10% Similarity=0.021 Sum_probs=28.5
Q ss_pred HHHHHHHhCCCCEEEEe---cCCC----ccchHHHHHHHHHhHHHcC
Q psy8530 25 LVFMKARERRVPIVMLT---SGGY----LKQTARIIADSILNLADLG 64 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~---gGGY----~~d~~~~v~~si~~l~~~~ 64 (68)
..++.+.+.+||++++- .... ..|.........++|.++|
T Consensus 138 ~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G 184 (344)
T 3kjx_A 138 AARAMLDAAGIPVVEIMDSDGKPVDAMVGISHRRAGREMAQAILKAG 184 (344)
T ss_dssp HHHHHHHHCSSCEEEEEECSSCCSSEEEEECHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCEEEEeCCCCCCCCCEEEECcHHHHHHHHHHHHHCC
Confidence 45677888999999883 1111 2456777888888998875
No 43
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=46.93 E-value=35 Score=23.19 Aligned_cols=31 Identities=16% Similarity=-0.036 Sum_probs=27.0
Q ss_pred cccCCHHHHHHHHHHHHHHHHhCCCCEEEEe
Q psy8530 11 DMLEDHLGIIRRDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 11 ~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~ 41 (68)
+++.|.+...++=+-+.+.|+++|++|-+.+
T Consensus 110 ~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l 140 (295)
T 1ydn_A 110 NINCTIAESIERLSPVIGAAINDGLAIRGYV 140 (295)
T ss_dssp HTSSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HcCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4678999999999999999999999997444
No 44
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=46.67 E-value=19 Score=22.51 Aligned_cols=23 Identities=9% Similarity=-0.022 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhCCCCEEEEecCC
Q psy8530 22 RDELVFMKARERRVPIVMLTSGG 44 (68)
Q Consensus 22 RD~~V~~~a~~~~IPva~v~gGG 44 (68)
+|..+++.++++|+|++.+.|+-
T Consensus 50 ~~~~~l~~L~~~g~~~~i~T~~~ 72 (189)
T 3mn1_A 50 LDGQGIKMLIASGVTTAIISGRK 72 (189)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSC
T ss_pred ccHHHHHHHHHCCCEEEEEECcC
Confidence 45569999999999998887653
No 45
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=46.16 E-value=54 Score=21.88 Aligned_cols=40 Identities=18% Similarity=0.022 Sum_probs=28.1
Q ss_pred HHHHHHHhCCCCEEEEe---cC-CC---ccchHHHHHHHHHhHHHcC
Q psy8530 25 LVFMKARERRVPIVMLT---SG-GY---LKQTARIIADSILNLADLG 64 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~---gG-GY---~~d~~~~v~~si~~l~~~~ 64 (68)
..++.+.+.+||++++- .. .+ ..|.........++|.++|
T Consensus 140 ~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G 186 (355)
T 3e3m_A 140 QTIRLLQRASIPIVEIWEKPAHPIGHTVGFSNERAAYDMTNALLARG 186 (355)
T ss_dssp HHHHHHHHCCSCEEEESSCCSSCSSEEEECCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCEEEECCccCCCCCCEEEeChHHHHHHHHHHHHHCC
Confidence 35677888999999872 11 11 2356777788888998876
No 46
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=45.58 E-value=27 Score=21.35 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCC
Q psy8530 21 RRDELVFMKARERRVPIVMLTSGGY 45 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~gGGY 45 (68)
.++..+++.++++|++++.+.|.-+
T Consensus 38 ~~~~~~l~~L~~~G~~~~i~Tg~~~ 62 (180)
T 1k1e_A 38 VRDGLGIKMLMDADIQVAVLSGRDS 62 (180)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCCC
T ss_pred cchHHHHHHHHHCCCeEEEEeCCCc
Confidence 4677899999999999988776644
No 47
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=45.16 E-value=23 Score=25.35 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEe-cCCCccch
Q psy8530 14 EDHLGIIRRDELVFMKARERRVPIVMLT-SGGYLKQT 49 (68)
Q Consensus 14 lS~~Gi~~RD~~V~~~a~~~~IPva~v~-gGGY~~d~ 49 (68)
++.+|- +.=...++.|.+.++|+++++ +||+....
T Consensus 141 ~~~~~~-~Ka~r~~~~A~~~~~PlI~lvdt~Ga~~g~ 176 (327)
T 2f9i_A 141 AHPEGY-RKALRLMKQAEKFNRPIFTFIDTKGAYPGK 176 (327)
T ss_dssp CCHHHH-HHHHHHHHHHHHTTCCEEEEEEESCSCCCH
T ss_pred CCHHHH-HHHHHHHHHHhhcCCCEEEEEeCCCCCcch
Confidence 444543 344456789999999999888 55554443
No 48
>1edt_A Endo-beta-N-acetylglucosaminidase H, endo H; hydrolase (glucosidase); 1.90A {Streptomyces plicatus} SCOP: c.1.8.5 PDB: 1c90_A 1c8x_A 1c91_A 1c3f_A 1c92_A 1c8y_A 1c93_A
Probab=45.14 E-value=23 Score=24.21 Aligned_cols=40 Identities=10% Similarity=0.151 Sum_probs=26.8
Q ss_pred HHHHHHhCCCCEEEEecCC-----Cc----cchHHHHHHHHHhHHHcCC
Q psy8530 26 VFMKARERRVPIVMLTSGG-----YL----KQTARIIADSILNLADLGL 65 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gGG-----Y~----~d~~~~v~~si~~l~~~~~ 65 (68)
-++.|++.++.|...+||. +. .+..+....|+.++.++..
T Consensus 75 ~i~~~~~~g~KvllsiGG~~~~~~~~~l~s~~~r~~f~~s~~~~~~~~~ 123 (271)
T 1edt_A 75 QIRPLQQQGIKVLLSVLGNHQGAGFANFPSQQAASAFAKQLSDAVAKYG 123 (271)
T ss_dssp HTHHHHHTTCEEEEEEEECTTSCCTTCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCEEEEEECCCCCCCCceecCCHHHHHHHHHHHHHHHHHhC
Confidence 3466788999999999873 21 2234456677877777643
No 49
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=45.08 E-value=16 Score=20.35 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCCCEEEEecCCCc
Q psy8530 22 RDELVFMKARERRVPIVMLTSGGYL 46 (68)
Q Consensus 22 RD~~V~~~a~~~~IPva~v~gGGY~ 46 (68)
|-..+....++.|.+ +.++-|||.
T Consensus 65 rs~~a~~~L~~~G~~-v~~l~GG~~ 88 (94)
T 1wv9_A 65 LSQVAALYLEAEGYE-AMSLEGGLQ 88 (94)
T ss_dssp HHHHHHHHHHHHTCC-EEEETTGGG
T ss_pred hHHHHHHHHHHcCCc-EEEEcccHH
Confidence 667778888888999 888999985
No 50
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=44.92 E-value=50 Score=21.82 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=27.0
Q ss_pred HHHHHHhCCCCEEEEec---CC---CccchHHHHHHHHHhHHHcC
Q psy8530 26 VFMKARERRVPIVMLTS---GG---YLKQTARIIADSILNLADLG 64 (68)
Q Consensus 26 V~~~a~~~~IPva~v~g---GG---Y~~d~~~~v~~si~~l~~~~ 64 (68)
.++.+.+.+||++++-. .. -..|.........++|.++|
T Consensus 133 ~~~~l~~~~iPvV~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G 177 (339)
T 3h5o_A 133 FERILSQHALPVVYMMDLADDGRCCVGFSQEDAGAAITRHLLSRG 177 (339)
T ss_dssp HHHHHHHTTCCEEEEESCCSSSCCEEECCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCCEEEEeecCCCCCeEEEECHHHHHHHHHHHHHHCC
Confidence 46678889999998721 11 12356677788888998875
No 51
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum}
Probab=44.68 E-value=32 Score=21.73 Aligned_cols=30 Identities=17% Similarity=0.323 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCCC
Q psy8530 16 HLGIIRRDELVFMKARERRVPIVMLTSGGY 45 (68)
Q Consensus 16 ~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY 45 (68)
.+.+..+=..+++.|++.++||+.+--.-|
T Consensus 24 ~~~~i~~i~~l~~~ar~~g~pVi~t~~~~~ 53 (182)
T 3eef_A 24 AMKTVGPARKVIETFRRSGLPVVYVNDSHY 53 (182)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECBC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEecccC
Confidence 356777778899999999999999874333
No 52
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=44.66 E-value=56 Score=21.05 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=28.8
Q ss_pred HHHHHHHhCCCCEEEEecC----CC---ccchHHHHHHHHHhHHHcC
Q psy8530 25 LVFMKARERRVPIVMLTSG----GY---LKQTARIIADSILNLADLG 64 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gG----GY---~~d~~~~v~~si~~l~~~~ 64 (68)
-.++.+.+.+||++++-.. ++ ..|.........++|.++|
T Consensus 79 ~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G 125 (294)
T 3qk7_A 79 FRLQYLQKQNFPFLALGRSHLPKPYAWFDFDNHAGASLAVKRLLELG 125 (294)
T ss_dssp HHHHHHHHTTCCEEEESCCCCSSCCEEEEECHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCCCEEEcChHHHHHHHHHHHHHCC
Confidence 3567888899999877432 22 2456777888888998875
No 53
>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} SCOP: c.33.1.0
Probab=44.54 E-value=36 Score=21.93 Aligned_cols=27 Identities=11% Similarity=0.319 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEe
Q psy8530 15 DHLGIIRRDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 15 S~~Gi~~RD~~V~~~a~~~~IPva~v~ 41 (68)
..+.+..+=..+++.|+++|+||+.+-
T Consensus 34 ~~~~~i~~i~~Li~~ar~~g~pVi~t~ 60 (199)
T 3txy_A 34 SGGDVVAKTAELANAFRARKLPVIFVH 60 (199)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 567788888999999999999999876
No 54
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=44.29 E-value=10 Score=23.71 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=24.2
Q ss_pred CCEEEEecCCCccchHHHHHHHHHhHHHcCCcCC
Q psy8530 35 VPIVMLTSGGYLKQTARIIADSILNLADLGLISR 68 (68)
Q Consensus 35 IPva~v~gGGY~~d~~~~v~~si~~l~~~~~~~~ 68 (68)
-|..-.++-.-+.+.. .|.+.|.+|.+||+|.+
T Consensus 51 ~ps~~~LA~~~~~s~~-~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 51 FPTPNQLQEGMSISVE-ECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp SCCHHHHHTTSSSCHH-HHHHHHHHHHHHTSCEE
T ss_pred CCCHHHHHHHHCcCHH-HHHHHHHHHHHCCCEEE
Confidence 3455556666655554 69999999999999864
No 55
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=44.19 E-value=57 Score=20.68 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEecC
Q psy8530 15 DHLGIIRRDELVFMKARERRVPIVMLTSG 43 (68)
Q Consensus 15 S~~Gi~~RD~~V~~~a~~~~IPva~v~gG 43 (68)
+...+..+-.-.++.++++|+|++.+.|-
T Consensus 19 ~~~~~~~~~~~ai~~l~~~Gi~v~laTgr 47 (266)
T 3pdw_A 19 NGTEKIEEACEFVRTLKDRGVPYLFVTNN 47 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred eCCEeCccHHHHHHHHHHCCCeEEEEeCC
Confidence 34566778888999999999999999873
No 56
>3poh_A Endo-beta-N-acetylglucosaminidase F1; TIM barrel, structural genomics, joint center for structural genomics, JCSG; 1.55A {Bacteroides thetaiotaomicron}
Probab=44.15 E-value=44 Score=25.28 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=30.8
Q ss_pred HHHHHHHHhCCCCEEEEecCCCccc--------hHHHHHHHHHhHHHcCCc
Q psy8530 24 ELVFMKARERRVPIVMLTSGGYLKQ--------TARIIADSILNLADLGLI 66 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v~gGGY~~d--------~~~~v~~si~~l~~~~~~ 66 (68)
.--++.++++|+-|...+|||+... .....+.++.++.++..+
T Consensus 231 ~~~v~~lq~~glKVllSIgGg~~~~gf~~ls~~~r~~Fa~~v~~~v~~ygl 281 (451)
T 3poh_A 231 ETLLQPLRRRGVKVLLGLLGNHDITGLAQLSEQGAKDFAREVAQYCKAYNL 281 (451)
T ss_dssp HHHTHHHHHTTCEEEEEEECCSSSCCTTCBCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCEEEEEECcCCCCCCcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 3445788899999999997776432 344677888888887544
No 57
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*
Probab=43.66 E-value=18 Score=23.73 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEec
Q psy8530 17 LGIIRRDELVFMKARERRVPIVMLTS 42 (68)
Q Consensus 17 ~Gi~~RD~~V~~~a~~~~IPva~v~g 42 (68)
.|....-+.+++.|++.++|++..-+
T Consensus 143 ~~~~~~~~~il~l~k~~g~~ivisSD 168 (212)
T 1v77_A 143 ANLLRFMMKAWKLVEKYKVRRFLTSS 168 (212)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEECC
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeCC
Confidence 45566777899999999999987543
No 58
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=43.44 E-value=21 Score=21.95 Aligned_cols=19 Identities=11% Similarity=-0.120 Sum_probs=15.6
Q ss_pred HHHHHHHhCCCCEEEEecC
Q psy8530 25 LVFMKARERRVPIVMLTSG 43 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gG 43 (68)
-+++.++++|+|++.+.++
T Consensus 99 ~~l~~l~~~g~~~~ivS~~ 117 (232)
T 3fvv_A 99 DVVRGHLAAGDLCALVTAT 117 (232)
T ss_dssp HHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHHHCCCEEEEEeCC
Confidence 4688889999999888665
No 59
>3cz8_A Putative sporulation-specific glycosylase YDHD; structural genomics, uncharacterized protein, protein struct initiative, PSI-2; 2.20A {Bacillus subtilis subsp}
Probab=43.42 E-value=35 Score=23.44 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCCCEEEEecC
Q psy8530 23 DELVFMKARERRVPIVMLTSG 43 (68)
Q Consensus 23 D~~V~~~a~~~~IPva~v~gG 43 (68)
|.-+++.+++.++.+...+||
T Consensus 55 ~~~~~~~~~~~~~kv~lsigg 75 (319)
T 3cz8_A 55 DAAAIETTWQRRVTPLATITN 75 (319)
T ss_dssp CHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHCCCeEEEEEec
Confidence 345678899999999888875
No 60
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=43.41 E-value=34 Score=18.99 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCCCEEEEecCCCc
Q psy8530 24 ELVFMKARERRVPIVMLTSGGYL 46 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v~gGGY~ 46 (68)
.-+++.++++|+|++.+.++-..
T Consensus 24 ~~~l~~L~~~G~~~~i~S~~~~~ 46 (137)
T 2pr7_A 24 RNLLAAAKKNGVGTVILSNDPGG 46 (137)
T ss_dssp HHHHHHHHHTTCEEEEEECSCCG
T ss_pred HHHHHHHHHCCCEEEEEeCCCHH
Confidence 45788999999999877766443
No 61
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=42.73 E-value=23 Score=22.24 Aligned_cols=23 Identities=9% Similarity=0.187 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEecC
Q psy8530 21 RRDELVFMKARERRVPIVMLTSG 43 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~gG 43 (68)
.+|...++.++++|+|++.+.++
T Consensus 49 ~~d~~~l~~L~~~g~~~~ivTn~ 71 (191)
T 3n1u_A 49 VQDGMGLKLLMAAGIQVAIITTA 71 (191)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSC
T ss_pred ccChHHHHHHHHCCCeEEEEeCc
Confidence 35666899999999999888765
No 62
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=42.67 E-value=65 Score=20.68 Aligned_cols=30 Identities=13% Similarity=-0.061 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecCCCc
Q psy8530 17 LGIIRRDELVFMKARERRVPIVMLTSGGYL 46 (68)
Q Consensus 17 ~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~ 46 (68)
+-..++=+..++.|.+.|+|.+.+.+|.+.
T Consensus 80 ~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~ 109 (286)
T 3dx5_A 80 EKTIEKCEQLAILANWFKTNKIRTFAGQKG 109 (286)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEECSCSSC
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEcCCCCC
Confidence 334455567899999999999999887664
No 63
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=42.39 E-value=22 Score=22.39 Aligned_cols=40 Identities=5% Similarity=0.034 Sum_probs=25.9
Q ss_pred HHHHHhCCCCEEEEec-------CC----Ccc-chHHHHHHHHHhHHHcCCc
Q psy8530 27 FMKARERRVPIVMLTS-------GG----YLK-QTARIIADSILNLADLGLI 66 (68)
Q Consensus 27 ~~~a~~~~IPva~v~g-------GG----Y~~-d~~~~v~~si~~l~~~~~~ 66 (68)
|++|+++|+|+.+++. |- |.- +..+.-..-|+.|.++|++
T Consensus 89 ~~~~~~~~L~~~~~id~~G~~~~~~~~~~~~Gl~~~~A~~~Ii~~L~~~g~l 140 (147)
T 1wka_A 89 YEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHL 140 (147)
T ss_dssp HHHHHHHTCCCCCSBCTTSBBCSTTSCGGGTTSBHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHcCCCcceEECCCCEEcCCCcccccCCcCHHHHHHHHHHHHHHCCCe
Confidence 4568889999988872 21 322 2344555567778887765
No 64
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=42.31 E-value=67 Score=20.73 Aligned_cols=27 Identities=15% Similarity=-0.077 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCc
Q psy8530 20 IRRDELVFMKARERRVPIVMLTSGGYL 46 (68)
Q Consensus 20 ~~RD~~V~~~a~~~~IPva~v~gGGY~ 46 (68)
.++=+..++.|.+.|.|.+.+..|-+.
T Consensus 101 ~~~~~~~i~~a~~lG~~~v~~~~G~~~ 127 (290)
T 3tva_A 101 VAEMKEISDFASWVGCPAIGLHIGFVP 127 (290)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCCCCC
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCc
Confidence 345567899999999999988776443
No 65
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=42.26 E-value=10 Score=24.78 Aligned_cols=17 Identities=18% Similarity=0.069 Sum_probs=14.2
Q ss_pred HHHHHHHhCCCCEEEEec
Q psy8530 25 LVFMKARERRVPIVMLTS 42 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~g 42 (68)
.+.+++.+ +|||++++.
T Consensus 53 eL~~~ae~-~iPVvtT~~ 69 (174)
T 1ytl_A 53 RVKKFVEK-DITVVATGS 69 (174)
T ss_dssp HHHHHHTS-SSEEEEETT
T ss_pred HHHHHHHc-CCCEEEccc
Confidence 35789999 999998864
No 66
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=42.10 E-value=13 Score=25.45 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEe
Q psy8530 21 RRDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~ 41 (68)
.+|...+..|...|||++++.
T Consensus 125 ~~e~~ai~EA~~l~IPvIalv 145 (208)
T 1vi6_A 125 AIDKQAVSEATAVGIPVVALC 145 (208)
T ss_dssp TTTHHHHHHHHHTTCCEEEEE
T ss_pred CcchhHHHHHHHhCCCEEEEe
Confidence 367888999999999999986
No 67
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=41.82 E-value=55 Score=20.73 Aligned_cols=40 Identities=13% Similarity=-0.058 Sum_probs=28.2
Q ss_pred HHHHHHHhCCCCEEEEec---C-C-C---ccchHHHHHHHHHhHHHcC
Q psy8530 25 LVFMKARERRVPIVMLTS---G-G-Y---LKQTARIIADSILNLADLG 64 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~g---G-G-Y---~~d~~~~v~~si~~l~~~~ 64 (68)
-.++.+.+.+||++++-. + + + ..|.........++|.++|
T Consensus 85 ~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g 132 (304)
T 3gbv_A 85 GFTDALNELGIPYIYIDSQIKDAPPLAFFGQNSHQSGYFAARMLMLLA 132 (304)
T ss_dssp HHHHHHHHHTCCEEEESSCCTTSCCSEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCeEEEEeCCCCCCCceEEEecChHHHHHHHHHHHHHHh
Confidence 357778888999988753 2 1 1 2456777778888888875
No 68
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=41.41 E-value=20 Score=23.32 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=26.6
Q ss_pred HHHHHhCCCCEEEEec--CC-----Ccc-chHHHHHHHHHhHHHcCCc
Q psy8530 27 FMKARERRVPIVMLTS--GG-----YLK-QTARIIADSILNLADLGLI 66 (68)
Q Consensus 27 ~~~a~~~~IPva~v~g--GG-----Y~~-d~~~~v~~si~~l~~~~~~ 66 (68)
|++|+++|+|+.+++. |= |.- ...+.-..-|+.|.++|++
T Consensus 130 ~~~~~~~~L~i~~~id~~G~~~~~~~~Gl~v~~A~~~Ii~~L~~~g~l 177 (186)
T 1wny_A 130 LETARVYGLPLLKTVDEEGKLLVEPFKGLYFREANRAILRDLRGRGLL 177 (186)
T ss_dssp HHHHHHHTCCCCCCBCTTSBBCSTTCTTCBHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHcCCceEeeeCCCccCccCCCCCcCHHHHHHHHHHHHHHCCCe
Confidence 5668889999998883 21 332 2345555677778887765
No 69
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Probab=40.58 E-value=55 Score=19.99 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=16.0
Q ss_pred HHHHHHhCCCCEEEEecC
Q psy8530 26 VFMKARERRVPIVMLTSG 43 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gG 43 (68)
+++.++++|+|++.+.++
T Consensus 50 ~L~~L~~~G~~l~i~Tn~ 67 (176)
T 2fpr_A 50 QLLKLQKAGYKLVMITNQ 67 (176)
T ss_dssp HHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHCCCEEEEEECC
Confidence 688999999999988876
No 70
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=40.43 E-value=14 Score=22.44 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhC---CC--CEEEEecCCCccchHHHHHHHHHhHHHcCCcCC
Q psy8530 21 RRDELVFMKARER---RV--PIVMLTSGGYLKQTARIIADSILNLADLGLISR 68 (68)
Q Consensus 21 ~RD~~V~~~a~~~---~I--Pva~v~gGGY~~d~~~~v~~si~~l~~~~~~~~ 68 (68)
..+-.|+-..... +. |....++--=+- ....|.+.|.+|.+||+|.|
T Consensus 32 ~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~-s~~~V~~~l~~Le~kGlI~~ 83 (128)
T 2vn2_A 32 EGELVLLLHMQSFFEEGVLFPTPAELAERMTV-SAAECMEMVRRLLQKGMIAI 83 (128)
T ss_dssp HHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSS-CHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEE
Confidence 3455565555442 32 233333333222 34578999999999999864
No 71
>2ebn_A Endo-beta-N-acetylglucosaminidase F1; hydrolase(glucosidase); 2.00A {Elizabethkingia meningoseptica} SCOP: c.1.8.5
Probab=40.25 E-value=33 Score=24.27 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=27.2
Q ss_pred HHHHHHhCCCCEEEEecCCCc--------cchHHHHHHHHHhHHHcC
Q psy8530 26 VFMKARERRVPIVMLTSGGYL--------KQTARIIADSILNLADLG 64 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gGGY~--------~d~~~~v~~si~~l~~~~ 64 (68)
-+..++++++-|...+|||.. ....+..+.|+.++.++.
T Consensus 76 ~i~~lq~~glKVllSIGG~~~~~g~~~l~~~~r~~Fa~sv~~~v~~y 122 (289)
T 2ebn_A 76 YLKPLQDKGIKVILSILGNHDRSGIANLSTARAKAFAQELKNTCDLY 122 (289)
T ss_dssp HTHHHHHTTCEEEEEEECCSSSCCTTCBCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCEEEEEeCCCCCCCCeecCCHHHHHHHHHHHHHHHHHh
Confidence 346678899999988888542 223456677888887774
No 72
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=40.20 E-value=37 Score=19.98 Aligned_cols=25 Identities=4% Similarity=0.070 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCC
Q psy8530 21 RRDELVFMKARERRVPIVMLTSGGY 45 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~gGGY 45 (68)
.++.-.++.++++|+|++.+.++..
T Consensus 39 ~~~~~~l~~l~~~g~~~~i~T~~~~ 63 (162)
T 2p9j_A 39 VLDGIGIKLLQKMGITLAVISGRDS 63 (162)
T ss_dssp HHHHHHHHHHHTTTCEEEEEESCCC
T ss_pred ccHHHHHHHHHHCCCEEEEEeCCCc
Confidence 3456789999999999988876543
No 73
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=39.86 E-value=31 Score=24.87 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEe-cCCCccch
Q psy8530 14 EDHLGIIRRDELVFMKARERRVPIVMLT-SGGYLKQT 49 (68)
Q Consensus 14 lS~~Gi~~RD~~V~~~a~~~~IPva~v~-gGGY~~d~ 49 (68)
++.+|.. .=...++.|.+.++|+++++ +||+....
T Consensus 155 ~~~~~~~-Ka~r~~~~A~~~~lPlI~lvDt~Ga~~g~ 190 (339)
T 2f9y_A 155 PAPEGYR-KALRLMQMAERFKMPIITFIDTPGAYPGV 190 (339)
T ss_dssp CCHHHHH-HHHHHHHHHHHTTCCEEEEEEESCSCCSH
T ss_pred CCHHHHH-HHHHHHHHHhhcCCCEEEEEeCCCCccch
Confidence 4555543 33445689999999999888 55554443
No 74
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis}
Probab=39.33 E-value=44 Score=20.80 Aligned_cols=27 Identities=11% Similarity=0.260 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEe
Q psy8530 15 DHLGIIRRDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 15 S~~Gi~~RD~~V~~~a~~~~IPva~v~ 41 (68)
..+.+.++=...++.|++.++||+.+-
T Consensus 25 ~~~~~~~~i~~li~~ar~~g~pVi~t~ 51 (167)
T 2a67_A 25 RLPAVLDKVNQRIAVYRQHHAPIIFVQ 51 (167)
T ss_dssp THHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 356688888889999999999999876
No 75
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=39.30 E-value=52 Score=20.73 Aligned_cols=39 Identities=8% Similarity=0.016 Sum_probs=23.7
Q ss_pred HHH-HHHhCCCCEEEEecC-----CCccchHHHHHHHHHhHHHcC
Q psy8530 26 VFM-KARERRVPIVMLTSG-----GYLKQTARIIADSILNLADLG 64 (68)
Q Consensus 26 V~~-~a~~~~IPva~v~gG-----GY~~d~~~~v~~si~~l~~~~ 64 (68)
.++ .+++.+||++++-.. --..|.........++|.++|
T Consensus 77 ~~~~~l~~~~iPvV~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G 121 (277)
T 3e61_A 77 IIENTLTDHHIPFVFIDRINNEHNGISTNHFKGGQLQAEVVRKGK 121 (277)
T ss_dssp HHHHHHHHC-CCEEEGGGCC---------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCEEEEeccCCCCCeEEechHHHHHHHHHHHHHCC
Confidence 367 888899999876432 123455666677777888775
No 76
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=39.11 E-value=16 Score=19.93 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=16.1
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
..+|...+..|.+||+|.|
T Consensus 41 ~~Tv~~~l~rL~~kGlv~r 59 (82)
T 1p6r_A 41 PKTIQTMLLRLIKKGALNH 59 (82)
T ss_dssp HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHCCCeEE
Confidence 4578889999999999865
No 77
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=38.94 E-value=50 Score=24.95 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=18.6
Q ss_pred HHHHHHHhCCCCEEEEecCCCcc
Q psy8530 25 LVFMKARERRVPIVMLTSGGYLK 47 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gGGY~~ 47 (68)
-+++.|-++|++ +++++.|++.
T Consensus 51 ~~v~e~~~~Gv~-~viis~Gf~~ 72 (480)
T 3dmy_A 51 ELANQALDRNLN-VMMFSDNVTL 72 (480)
T ss_dssp HHHHHHHHTTCE-EEECCCCCCH
T ss_pred HHHHHHHhcCCC-EEEECCCCCH
Confidence 467788899999 8889999983
No 78
>3lqy_A Putative isochorismatase hydrolase; structural genomics, PSI-2, PROT structure initiative, midwest center for structural genomic; 1.75A {Oleispira antarctica} SCOP: c.33.1.0
Probab=38.82 E-value=50 Score=20.96 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEe
Q psy8530 15 DHLGIIRRDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 15 S~~Gi~~RD~~V~~~a~~~~IPva~v~ 41 (68)
..+.+.++=..+++.|++.++||+.+-
T Consensus 32 ~~~~~i~~i~~l~~~ar~~g~pVi~t~ 58 (190)
T 3lqy_A 32 GTEAAAEQGAKLLAKFRQQGLPVVHVR 58 (190)
T ss_dssp THHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 457788888899999999999999886
No 79
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=38.31 E-value=70 Score=20.65 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=25.6
Q ss_pred HHHHHHhCCCCEEEEecC---C----C----ccchHHHHHHHHHhHHHcC
Q psy8530 26 VFMKARERRVPIVMLTSG---G----Y----LKQTARIIADSILNLADLG 64 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gG---G----Y----~~d~~~~v~~si~~l~~~~ 64 (68)
.++.+.+.+||++++-.. . | ..|.........++|.++|
T Consensus 75 ~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g 124 (306)
T 2vk2_A 75 VLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEV 124 (306)
T ss_dssp HHHHHHHTTCCEEEESSCCCCSCGGGSSEEEECCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEecCCCCCCCccceEEEEecCHHHHHHHHHHHHHHhc
Confidence 467778899999876321 1 1 1245666777788888765
No 80
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=38.25 E-value=69 Score=20.71 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=26.5
Q ss_pred HHHHHHhCCCCEEEEecC---CC---ccchHHHHHHHHHhHHHcC
Q psy8530 26 VFMKARERRVPIVMLTSG---GY---LKQTARIIADSILNLADLG 64 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gG---GY---~~d~~~~v~~si~~l~~~~ 64 (68)
.++.+.+ +||++++-.- ++ ..|.........++|.++|
T Consensus 87 ~~~~l~~-~iPvV~i~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G 130 (303)
T 3kke_A 87 MLAAVLE-GVPAVTINSRVPGRVGSVILDDQKGGGIATEHLITLG 130 (303)
T ss_dssp HHHHHHT-TSCEEEESCCCTTCCCEEEECHHHHHHHHHHHHHHTT
T ss_pred HHHHHhC-CCCEEEECCcCCCCCCEEEECcHHHHHHHHHHHHHCC
Confidence 5677777 9999876421 21 2456777888888898875
No 81
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=38.15 E-value=55 Score=19.99 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=21.3
Q ss_pred HHHHHHHHhCCCCEEEEecCCCccchHHH
Q psy8530 24 ELVFMKARERRVPIVMLTSGGYLKQTARI 52 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v~gGGY~~d~~~~ 52 (68)
.-|++.|.+.+++.+++..|+++++..+.
T Consensus 83 ~~v~~~~~~~g~~~i~~~~~~~~~~l~~~ 111 (138)
T 1y81_A 83 LQVAKEAVEAGFKKLWFQPGAESEEIRRF 111 (138)
T ss_dssp HHHHHHHHHTTCCEEEECTTSCCHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcCccHHHHHHHH
Confidence 44566788899999999999886554443
No 82
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=38.07 E-value=15 Score=25.50 Aligned_cols=20 Identities=10% Similarity=0.189 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhCCCCEEEEe
Q psy8530 22 RDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 22 RD~~V~~~a~~~~IPva~v~ 41 (68)
+|...+..|...|||++++.
T Consensus 168 ~e~~ai~EA~~l~IPvIaiv 187 (231)
T 3bbn_B 168 EEYTALRECITLGIPTICLI 187 (231)
T ss_dssp TTHHHHHHHHTTTCCEEECC
T ss_pred cccHHHHHHHHhCCCEEEEe
Confidence 57788999999999999986
No 83
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=38.03 E-value=75 Score=20.02 Aligned_cols=28 Identities=14% Similarity=-0.013 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEecCCC
Q psy8530 18 GIIRRDELVFMKARERRVPIVMLTSGGY 45 (68)
Q Consensus 18 Gi~~RD~~V~~~a~~~~IPva~v~gGGY 45 (68)
-..++=+..++.|.+.|.|.+.+..|.+
T Consensus 82 ~~~~~~~~~i~~a~~lG~~~v~~~~g~~ 109 (260)
T 1k77_A 82 EAHADIDLALEYALALNCEQVHVMAGVV 109 (260)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECCCCBC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECcCCC
Confidence 4456667889999999999998876654
No 84
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=37.84 E-value=18 Score=21.42 Aligned_cols=19 Identities=11% Similarity=0.111 Sum_probs=16.8
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
..+|...+..|.+||+|.|
T Consensus 67 ~sTVt~~L~rLe~KGlV~R 85 (99)
T 2k4b_A 67 LATVKTLLGRLVKKEMLST 85 (99)
T ss_dssp HHHHHHHHHHHHHTTSCEE
T ss_pred HhhHHHHHHHHHHCCCEEE
Confidence 5689999999999999975
No 85
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=37.80 E-value=66 Score=20.16 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=26.5
Q ss_pred HHHHHHhCCCCEEEEecC----CC---ccchHHHHHHHHHhHHHcC
Q psy8530 26 VFMKARERRVPIVMLTSG----GY---LKQTARIIADSILNLADLG 64 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gG----GY---~~d~~~~v~~si~~l~~~~ 64 (68)
.++.+++.+||++++-.. ++ ..|.........++|.++|
T Consensus 74 ~~~~l~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G 119 (275)
T 3d8u_A 74 THQLLEASNTPVLEIAELSSKASYLNIGVDHFEVGKACTRHLIEQG 119 (275)
T ss_dssp HHHHHHHHTCCEEEESSSCSSSSSEEECBCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCEEEEeeccCCCCCCEEEEChHHHHHHHHHHHHHCC
Confidence 466777789999887321 11 2356667777888888875
No 86
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=37.72 E-value=17 Score=25.78 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEe
Q psy8530 21 RRDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~ 41 (68)
.+|...+..|...|||++++.
T Consensus 161 ~~e~~AI~EA~~lgIPvIalv 181 (253)
T 3bch_A 161 RADHQPLTEASYVNLPTIALC 181 (253)
T ss_dssp TTTHHHHHHHHHTTCCEEEEE
T ss_pred CccchHHHHHHHhCCCEEEEE
Confidence 467888999999999999987
No 87
>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3 PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A* 3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A*
Probab=37.28 E-value=65 Score=22.58 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhCCCCEEEEecC
Q psy8530 21 RRDELVFMKARERRVPIVMLTSG 43 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~gG 43 (68)
+.=+..++.|++.|.|.+.+.+|
T Consensus 116 ~~~~~~i~~A~~LGa~~vv~~~G 138 (393)
T 1xim_A 116 RKVLRQMDLGAELGAKTLVLWGG 138 (393)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECT
T ss_pred HHHHHHHHHHHHhCCCEEEECCC
Confidence 34467888999999999988766
No 88
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}
Probab=37.27 E-value=42 Score=25.57 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEe-cCCCcc
Q psy8530 14 EDHLGIIRRDELVFMKARERRVPIVMLT-SGGYLK 47 (68)
Q Consensus 14 lS~~Gi~~RD~~V~~~a~~~~IPva~v~-gGGY~~ 47 (68)
+..++-.+ =...++.|.+.++|++++. .+|+..
T Consensus 341 l~~~~~~K-~ar~i~~a~~~~~Plv~l~ds~G~~~ 374 (522)
T 1x0u_A 341 IDIDAADK-AARFIRFCDAFNIPLISLVDTPGYVP 374 (522)
T ss_dssp BCHHHHHH-HHHHHHHHHHTTCCEEEEEEECCBCC
T ss_pred cCHHHHHH-HHHHHHHHhhCCCCEEEEecCCCCCC
Confidence 34444333 3345679999999999988 888765
No 89
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3
Probab=37.23 E-value=56 Score=20.67 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEe
Q psy8530 15 DHLGIIRRDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 15 S~~Gi~~RD~~V~~~a~~~~IPva~v~ 41 (68)
..+.+..+=..+++.|++.++||+.+-
T Consensus 40 ~~~~~i~~i~~ll~~ar~~g~pVi~t~ 66 (199)
T 1j2r_A 40 TADEVVNRAGKLAAKFRASGQPVFLVR 66 (199)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cHHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 456788888899999999999999887
No 90
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=37.23 E-value=45 Score=21.29 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=27.1
Q ss_pred HHHHHHHhCCCCEEEEecC----CC---ccchHHHHHHHHHhHHHcC
Q psy8530 25 LVFMKARERRVPIVMLTSG----GY---LKQTARIIADSILNLADLG 64 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gG----GY---~~d~~~~v~~si~~l~~~~ 64 (68)
-.++.+.+.+||++++-.. ++ ..|.........++|.++|
T Consensus 78 ~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G 124 (291)
T 3egc_A 78 DYLRTELPKTFPIVAVNRELRIPGCGAVLSENVRGARTAVEYLIARG 124 (291)
T ss_dssp HHHHHSSCTTSCEEEESSCCCCTTCEEEEECHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhccCCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHcC
Confidence 4567778889999876421 11 2356667777888888875
No 91
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=37.15 E-value=77 Score=20.95 Aligned_cols=42 Identities=7% Similarity=-0.019 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCCEEEEecCCCc---------------------cchHHHHHHHHHhHHHcC
Q psy8530 23 DELVFMKARERRVPIVMLTSGGYL---------------------KQTARIIADSILNLADLG 64 (68)
Q Consensus 23 D~~V~~~a~~~~IPva~v~gGGY~---------------------~d~~~~v~~si~~l~~~~ 64 (68)
..-+++.+.+.+||++++-..--. .|.........+.|.+++
T Consensus 75 ~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g 137 (350)
T 3h75_A 75 APQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKL 137 (350)
T ss_dssp HHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHh
Confidence 345678899999999987532111 345666777777887765
No 92
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=36.98 E-value=32 Score=18.57 Aligned_cols=23 Identities=17% Similarity=0.014 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhCCCCEEEEecCCC
Q psy8530 22 RDELVFMKARERRVPIVMLTSGGY 45 (68)
Q Consensus 22 RD~~V~~~a~~~~IPva~v~gGGY 45 (68)
|-..+....++.|.+-+.++ |||
T Consensus 53 rs~~aa~~L~~~G~~~v~~l-GG~ 75 (85)
T 2jtq_A 53 QSGQAKEILSEMGYTHVENA-GGL 75 (85)
T ss_dssp HHHHHHHHHHHTTCSSEEEE-EET
T ss_pred hHHHHHHHHHHcCCCCEEec-cCH
Confidence 34444555555555544445 454
No 93
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A
Probab=36.89 E-value=1.3e+02 Score=23.02 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEe-cCCCccc
Q psy8530 14 EDHLGIIRRDELVFMKARERRVPIVMLT-SGGYLKQ 48 (68)
Q Consensus 14 lS~~Gi~~RD~~V~~~a~~~~IPva~v~-gGGY~~d 48 (68)
+..+|-.+=-+ .+++|.+.++|++++. ..||...
T Consensus 363 l~~~~a~Kaar-~i~~a~~~~iPlv~lvDt~Gf~~G 397 (548)
T 2bzr_A 363 LDINASEKAAR-FVRTCDCFNIPIVMLVDVPGFLPG 397 (548)
T ss_dssp BCHHHHHHHHH-HHHHHHHTTCCEEEEEEECCBCCC
T ss_pred CCHHHHHHHHH-HHHHHHhcCCCEEEEeeccCCCCC
Confidence 55556554444 7889999999999998 7787653
No 94
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=36.30 E-value=83 Score=20.06 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=25.8
Q ss_pred HHHHHHhCCCCEEEEecC----CC---ccchHHHHHHHHHhHHHcC
Q psy8530 26 VFMKARERRVPIVMLTSG----GY---LKQTARIIADSILNLADLG 64 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gG----GY---~~d~~~~v~~si~~l~~~~ 64 (68)
.++.+.+.+||++++-.. ++ ..|.........++|.++|
T Consensus 79 ~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G 124 (287)
T 3bbl_A 79 RVQFLLKQKFPFVAFGRSNPDWDFAWVDIDGTAGTRQAVEYLIGRG 124 (287)
T ss_dssp HHHHHHHTTCCEEEESCCSTTCCCCEEEECHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCEEEECCcCCCCCCCEEEeccHHHHHHHHHHHHHCC
Confidence 467777899999876321 11 1245666777788888775
No 95
>1a0c_A Xylose isomerase; ketolisomerase, xylose metabolism, glucose-fructose interconversion, hydride transfer; 2.50A {Thermoanaerobacteriumthermosulfurigenes} SCOP: c.1.15.3 PDB: 1a0d_A 1a0e_A
Probab=36.26 E-value=76 Score=23.32 Aligned_cols=21 Identities=10% Similarity=-0.010 Sum_probs=17.2
Q ss_pred HHHHHHHHhCCCCEEEEecCC
Q psy8530 24 ELVFMKARERRVPIVMLTSGG 44 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v~gGG 44 (68)
+..++.|.+.|+|.+.+++|-
T Consensus 170 k~aId~A~~LGa~~vv~~~G~ 190 (438)
T 1a0c_A 170 KKALEITKELGGENYVFWGGR 190 (438)
T ss_dssp HHHHHHHHHTTCSEEEECCTT
T ss_pred HHHHHHHHHcCCCEEEEccCC
Confidence 356778899999999998884
No 96
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=36.26 E-value=41 Score=21.14 Aligned_cols=24 Identities=8% Similarity=-0.071 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCE
Q psy8530 14 EDHLGIIRRDELVFMKARERRVPI 37 (68)
Q Consensus 14 lS~~Gi~~RD~~V~~~a~~~~IPv 37 (68)
+|.+--.++=+++|+.|++.|+|+
T Consensus 65 L~~~d~~~Na~~ais~ArklG~~~ 88 (124)
T 1wjo_A 65 LTEDDKHNNAKYAVSMARRIGARV 88 (124)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCCSC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCc
Confidence 688889999999999999999997
No 97
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=36.19 E-value=37 Score=20.81 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhCCCCEEEEecCC
Q psy8530 22 RDELVFMKARERRVPIVMLTSGG 44 (68)
Q Consensus 22 RD~~V~~~a~~~~IPva~v~gGG 44 (68)
+|..+++.++++|+|++.+.|.-
T Consensus 43 ~~~~~l~~L~~~g~~~~i~T~~~ 65 (176)
T 3mmz_A 43 GDGLGIAALRKSGLTMLILSTEQ 65 (176)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSC
T ss_pred ccHHHHHHHHHCCCeEEEEECcC
Confidence 34458999999999998877653
No 98
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=36.16 E-value=72 Score=21.32 Aligned_cols=23 Identities=9% Similarity=-0.221 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEe
Q psy8530 19 IIRRDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 19 i~~RD~~V~~~a~~~~IPva~v~ 41 (68)
..+.=+.+++.|.+.|+|.+.+.
T Consensus 112 ~~~~~~~~i~~A~~lG~~~v~~~ 134 (305)
T 3obe_A 112 FDEFWKKATDIHAELGVSCMVQP 134 (305)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCEEEeC
Confidence 34445668899999999999874
No 99
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=35.99 E-value=68 Score=18.96 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCCEEEEecCC
Q psy8530 25 LVFMKARERRVPIVMLTSGG 44 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gGG 44 (68)
-+++.++++|++++.+.++.
T Consensus 34 ~~l~~L~~~g~~~~i~Tn~~ 53 (179)
T 3l8h_A 34 QAIARLTQADWTVVLATNQS 53 (179)
T ss_dssp HHHHHHHHTTCEEEEEEECT
T ss_pred HHHHHHHHCCCEEEEEECCC
Confidence 47899999999999998775
No 100
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=35.77 E-value=19 Score=22.69 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=14.9
Q ss_pred HHHHHHHhCCCCEEEEec
Q psy8530 25 LVFMKARERRVPIVMLTS 42 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~g 42 (68)
.+.++|.+.++||++...
T Consensus 53 ~l~~lae~~~iPV~~t~~ 70 (170)
T 3cf4_G 53 RVVKISKAANIPIAATGS 70 (170)
T ss_dssp HHHHHHHHHTCCEEECTT
T ss_pred HHHHHHHHhCCCEEECcc
Confidence 467899999999998754
No 101
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=35.76 E-value=86 Score=20.07 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=26.0
Q ss_pred HHHHHHhCCCCEEEEecC----CC---ccchHHHHHHHHHhHHHcC
Q psy8530 26 VFMKARERRVPIVMLTSG----GY---LKQTARIIADSILNLADLG 64 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gG----GY---~~d~~~~v~~si~~l~~~~ 64 (68)
.++.+.+.+||++++-.. ++ ..|.........++|.++|
T Consensus 87 ~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G 132 (289)
T 2fep_A 87 HVAEFKRSPVPIVLAASVEEQEETPSVAIDYEQAIYDAVKLLVDKG 132 (289)
T ss_dssp HHHHHHHSSSCEEEESCCCTTCCSCEEECCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCEEEEccccCCCCCCEEEECcHHHHHHHHHHHHHCC
Confidence 456677889999876321 11 1245667777888888875
No 102
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=35.74 E-value=27 Score=20.55 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=13.5
Q ss_pred HHHHHHHHHhCCCCEE
Q psy8530 23 DELVFMKARERRVPIV 38 (68)
Q Consensus 23 D~~V~~~a~~~~IPva 38 (68)
=+.+.+.|+++||||.
T Consensus 29 A~~I~~~A~e~~VPi~ 44 (83)
T 3bzy_B 29 ALQIIKLAELYDIPVI 44 (83)
T ss_dssp HHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHcCCCEE
Confidence 3567889999999997
No 103
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=35.68 E-value=83 Score=19.84 Aligned_cols=25 Identities=12% Similarity=-0.047 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCC
Q psy8530 20 IRRDELVFMKARERRVPIVMLTSGG 44 (68)
Q Consensus 20 ~~RD~~V~~~a~~~~IPva~v~gGG 44 (68)
.++=+..++.|...|.|.+.+.+|.
T Consensus 83 ~~~~~~~i~~a~~lG~~~v~~~~g~ 107 (278)
T 1i60_A 83 ITEFKGMMETCKTLGVKYVVAVPLV 107 (278)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCC
Confidence 3444678899999999999887554
No 104
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=35.60 E-value=15 Score=22.33 Aligned_cols=18 Identities=44% Similarity=0.733 Sum_probs=14.8
Q ss_pred HHHHHHHHHhCCCCEEEE
Q psy8530 23 DELVFMKARERRVPIVML 40 (68)
Q Consensus 23 D~~V~~~a~~~~IPva~v 40 (68)
+..+++.|++++|||..+
T Consensus 87 ~~~i~~~A~~~~ipvl~t 104 (139)
T 2ioj_A 87 VQLVLTKAEERGVPVILT 104 (139)
T ss_dssp CHHHHHHHHHHTCCEEEC
T ss_pred CHHHHHHHHHCCCeEEEE
Confidence 356789999999999865
No 105
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=35.52 E-value=19 Score=20.75 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=16.3
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
..+|...+..|.+||+|.|
T Consensus 42 ~~Tvt~~l~rLe~kGlv~R 60 (126)
T 1sd4_A 42 DKTIRTLITRLYKKEIIKR 60 (126)
T ss_dssp HHHHHHHHHHHHHTTSEEE
T ss_pred hhhHHHHHHHHHHCCceEE
Confidence 4578889999999999875
No 106
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=35.48 E-value=6.4 Score=22.76 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhC-----CCCE-EEEecCCCccchHHHHHHHHHhHHHcCCcCC
Q psy8530 22 RDELVFMKARER-----RVPI-VMLTSGGYLKQTARIIADSILNLADLGLISR 68 (68)
Q Consensus 22 RD~~V~~~a~~~-----~IPv-a~v~gGGY~~d~~~~v~~si~~l~~~~~~~~ 68 (68)
|-+.++++.++. |-|+ +-=++-..+= +..+|.+=+..|-++|+|.|
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgv-S~~TVrr~L~~Le~kG~I~R 56 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADAAGL-SIYQVRLYLEQLHDVGVLEK 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHHHCC-CHHHHHHHHHHHHHCCcEEe
Confidence 667788888887 4453 3223322222 24568888999999999864
No 107
>4axv_A MPAA; hydrolase; HET: MSE; 2.17A {Vibrio harveyi}
Probab=35.40 E-value=52 Score=21.64 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=21.0
Q ss_pred HHHHhCCCCEEEE-ecCCCccchHHHHHHHHHhHHH
Q psy8530 28 MKARERRVPIVML-TSGGYLKQTARIIADSILNLAD 62 (68)
Q Consensus 28 ~~a~~~~IPva~v-~gGGY~~d~~~~v~~si~~l~~ 62 (68)
++|.++|||..++ +++.-..+..+....+|.++.+
T Consensus 203 d~a~~~gip~iT~ELp~~~~d~~~e~~~~ai~~~L~ 238 (243)
T 4axv_A 203 TWCNERQLPCITVELPPISADLTIEKHLDAFIALLQ 238 (243)
T ss_dssp HHHHHTTCCEEEEECCSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCcEEEEeCCCCcCcHHHHHHHHHHHHHHh
Confidence 4677899997655 3444333333445557777765
No 108
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=35.35 E-value=34 Score=21.10 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCCCCEEEEecCCC
Q psy8530 22 RDELVFMKARERRVPIVMLTSGGY 45 (68)
Q Consensus 22 RD~~V~~~a~~~~IPva~v~gGGY 45 (68)
+|..+++.++++|++++.+.++..
T Consensus 57 ~d~~~l~~L~~~g~~v~ivT~~~~ 80 (188)
T 2r8e_A 57 RDGYGIRCALTSDIEVAIITGRKA 80 (188)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSCC
T ss_pred ccHHHHHHHHHCCCeEEEEeCCCh
Confidence 455689999999999988876543
No 109
>3kio_A Ribonuclease H2 subunit A; aicardi-goutieres syndrome, RNAse H2, protein complex, autoimmune disease, endonuclease, hydrolase, metal-binding; 2.90A {Mus musculus} PDB: 3p5j_A 3puf_A 3p56_A
Probab=35.16 E-value=30 Score=24.85 Aligned_cols=45 Identities=16% Similarity=0.022 Sum_probs=33.1
Q ss_pred CCCCcccccCCHHHHHH---HHHHHHHHH----HhCCCCEEEEecCCCccchHHH
Q psy8530 5 WMGDQVDMLEDHLGIIR---RDELVFMKA----RERRVPIVMLTSGGYLKQTARI 52 (68)
Q Consensus 5 ~~~D~L~L~lS~~Gi~~---RD~~V~~~a----~~~~IPva~v~gGGY~~d~~~~ 52 (68)
+.+|...+.++.+-|.+ ||+++-++. .+..-| -.|-||..|....
T Consensus 167 ~KgDs~~~sVAAASIlAKV~RD~~M~~~~f~e~l~~~~~---~~GsGYPSDp~T~ 218 (301)
T 3kio_A 167 AKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDS---DYGSGYPNDPKTK 218 (301)
T ss_dssp TTGGGTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC---CCCSSSTTSHHHH
T ss_pred eccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHhhCC---CCCCcCCCCHHHH
Confidence 56788888999999998 999998763 122222 4789999887653
No 110
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=35.05 E-value=49 Score=23.31 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=28.8
Q ss_pred HHHHHHH----HHHHHHHHHhCCCCEEEEecCCCccchHHHHH
Q psy8530 16 HLGIIRR----DELVFMKARERRVPIVMLTSGGYLKQTARIIA 54 (68)
Q Consensus 16 ~~Gi~~R----D~~V~~~a~~~~IPva~v~gGGY~~d~~~~v~ 54 (68)
..|++.| |.+|-++..+++...++.+|-|+..-..++-.
T Consensus 75 n~g~~~Rt~~iD~~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~ 117 (334)
T 1rjd_A 75 NYGTYLRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQ 117 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCCCCccHHHHhcC
Confidence 3566667 45555566668899999999999888777644
No 111
>2y8v_A CHIC, class III chitinase, putative; afchic, hydrolase; 1.99A {Aspergillus fumigatus}
Probab=34.93 E-value=58 Score=22.20 Aligned_cols=38 Identities=11% Similarity=0.117 Sum_probs=24.4
Q ss_pred HHHHHhCCCCEEEEecCC----Ccc---c--hHHHHHHHHHhHHHcC
Q psy8530 27 FMKARERRVPIVMLTSGG----YLK---Q--TARIIADSILNLADLG 64 (68)
Q Consensus 27 ~~~a~~~~IPva~v~gGG----Y~~---d--~~~~v~~si~~l~~~~ 64 (68)
+..|+++|+.|...+||. |+. + ......+|+.++.++.
T Consensus 78 i~~~k~~g~kvllSiGG~~~~~fs~~~~~~~~r~~f~~s~~~~~~~~ 124 (290)
T 2y8v_A 78 VPVLKRSGVKVMGMLGGAAQGSYRCLDGDQEKFERYYQPLLAMVRRH 124 (290)
T ss_dssp HHHHHHTTCEEEEEEECSSTTTTGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEEEEECCCCCCCchhccCCHHHHHHHHHHHHHHHHHh
Confidence 677899999999988875 442 1 1122335666766653
No 112
>3tg2_A Vibriobactin-specific isochorismatase; hydrolase; HET: ISC PGE; 1.10A {Vibrio cholerae} PDB: 3tb4_A*
Probab=34.90 E-value=40 Score=22.43 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEec
Q psy8530 16 HLGIIRRDELVFMKARERRVPIVMLTS 42 (68)
Q Consensus 16 ~~Gi~~RD~~V~~~a~~~~IPva~v~g 42 (68)
.+.+.++=..+++.|++.|+||+.+-=
T Consensus 51 ~~~vv~~i~~Li~~ar~~g~pVi~t~~ 77 (223)
T 3tg2_A 51 IPSLIKHIQQLKAHAKQAGIPVVYTAQ 77 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 356778888899999999999998863
No 113
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=34.82 E-value=20 Score=20.82 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=17.6
Q ss_pred CccchHHHHHHHHHhHHHcCCcCC
Q psy8530 45 YLKQTARIIADSILNLADLGLISR 68 (68)
Q Consensus 45 Y~~d~~~~v~~si~~l~~~~~~~~ 68 (68)
+.++. ..|-.+|+.|++++.|.|
T Consensus 43 F~p~~-~~IKk~IE~LIereYl~R 65 (77)
T 3tdu_C 43 FKPRV-PVIKKCIDILIEKEYLER 65 (77)
T ss_dssp CCCCH-HHHHHHHHHHHHTTSEEE
T ss_pred CCCCH-HHHHHHHHHHHhhhHhhc
Confidence 44344 468999999999998875
No 114
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=34.65 E-value=92 Score=20.08 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEecC
Q psy8530 21 RRDELVFMKARERRVPIVMLTSG 43 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~gG 43 (68)
++=+..++.|...|+|.+.+..|
T Consensus 104 ~~~~~~i~~a~~lGa~~v~~~~g 126 (287)
T 3kws_A 104 DTMKEIIAAAGELGSTGVIIVPA 126 (287)
T ss_dssp HHHHHHHHHHHHTTCSEEEECSC
T ss_pred HHHHHHHHHHHHcCCCEEEEecC
Confidence 34456899999999999887654
No 115
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=34.53 E-value=28 Score=22.20 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCCCCEEEEecC
Q psy8530 22 RDELVFMKARERRVPIVMLTSG 43 (68)
Q Consensus 22 RD~~V~~~a~~~~IPva~v~gG 43 (68)
+|..-++.++++|+|++++.|+
T Consensus 56 ~d~~~l~~L~~~G~~~~ivT~~ 77 (195)
T 3n07_A 56 RDGYGVKALMNAGIEIAIITGR 77 (195)
T ss_dssp THHHHHHHHHHTTCEEEEECSS
T ss_pred ccHHHHHHHHHCCCEEEEEECc
Confidence 4556799999999999887765
No 116
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=34.50 E-value=41 Score=21.66 Aligned_cols=27 Identities=15% Similarity=0.032 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCCCEEEEecCCCccc
Q psy8530 22 RDELVFMKARERRVPIVMLTSGGYLKQ 48 (68)
Q Consensus 22 RD~~V~~~a~~~~IPva~v~gGGY~~d 48 (68)
+=+..++.|++.|.|.+.+..|++...
T Consensus 85 ~~~~~i~~A~~lGa~~v~~~~g~~~~~ 111 (264)
T 1yx1_A 85 ELEPTLRRAEACGAGWLKVSLGLLPEQ 111 (264)
T ss_dssp THHHHHHHHHHTTCSEEEEEEECCCSS
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCcH
Confidence 345689999999999999999888653
No 117
>4h17_A Hydrolase, isochorismatase family; rossmann-like fold, structural genomics, joint center for ST genomics, JCSG; 1.60A {Pseudomonas putida KT2440}
Probab=34.28 E-value=56 Score=21.06 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEe
Q psy8530 15 DHLGIIRRDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 15 S~~Gi~~RD~~V~~~a~~~~IPva~v~ 41 (68)
..+.+..+=..+++.|++.++||+.+-
T Consensus 44 ~~~~~i~~i~~l~~~ar~~g~pVi~t~ 70 (197)
T 4h17_A 44 GMDEAVANIARLLDAARKSGRPIIHVR 70 (197)
T ss_dssp THHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 356788888889999999999999886
No 118
>2f9z_C Protein (chemotaxis methylation protein); bacterial chemotaxis, signal transduction, receptor deamidas aspartyl phosphatase, protein complex; 2.40A {Thermotoga maritima} SCOP: d.194.1.3
Probab=34.15 E-value=43 Score=21.84 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=23.1
Q ss_pred HHHHH-HHHHHHHHhCCCCEEE-EecCCCccc
Q psy8530 19 IIRRD-ELVFMKARERRVPIVM-LTSGGYLKQ 48 (68)
Q Consensus 19 i~~RD-~~V~~~a~~~~IPva~-v~gGGY~~d 48 (68)
|-+|+ ++|.++.++.+||++. =+||=|++.
T Consensus 102 IG~rNv~~a~~~L~~~gI~i~aeD~GG~~gR~ 133 (159)
T 2f9z_C 102 IGARNVEAVKKHLKDFGIKLLAEDTGGNRARS 133 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECCSSCEE
T ss_pred hHHHHHHHHHHHHHHCCCcEEEEeCCCCCCcE
Confidence 44555 6789999999999985 468877765
No 119
>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A
Probab=34.15 E-value=33 Score=20.54 Aligned_cols=21 Identities=5% Similarity=0.162 Sum_probs=16.8
Q ss_pred HHHHHhCCCCEEEEecCCCcc
Q psy8530 27 FMKARERRVPIVMLTSGGYLK 47 (68)
Q Consensus 27 ~~~a~~~~IPva~v~gGGY~~ 47 (68)
+++|++.|++++++-.|++..
T Consensus 156 i~~a~~aG~~~~~~~~~~~~~ 176 (201)
T 2w43_A 156 VIGAKNAGMRSIFVNRKNTIV 176 (201)
T ss_dssp HHHHHHTTCEEEEECSSSCCC
T ss_pred hHHHHHCCCEEEEECCCCCCc
Confidence 567889999999988877643
No 120
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=33.94 E-value=28 Score=20.60 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=16.9
Q ss_pred EecCCCccchHHHHHHHHHhHHHc
Q psy8530 40 LTSGGYLKQTARIIADSILNLADL 63 (68)
Q Consensus 40 v~gGGY~~d~~~~v~~si~~l~~~ 63 (68)
|-+|+|+..++ +|...|..|.++
T Consensus 22 V~sG~Y~s~SE-viR~~lR~l~~r 44 (88)
T 3kxe_C 22 VADGRYGSASE-VIRAGLRLLEEN 44 (88)
T ss_dssp HTTTSCSSHHH-HHHHHHHHHHHH
T ss_pred HHcCCCCCHHH-HHHHHHHHHHHH
Confidence 34799985554 888888887654
No 121
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=33.87 E-value=85 Score=19.87 Aligned_cols=17 Identities=6% Similarity=-0.320 Sum_probs=14.3
Q ss_pred HHHHHHHHhCCCCEEEE
Q psy8530 24 ELVFMKARERRVPIVML 40 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v 40 (68)
+..++.|...|.|.+.+
T Consensus 87 ~~~i~~A~~lG~~~v~~ 103 (281)
T 3u0h_A 87 PDRARLCARLGARSVTA 103 (281)
T ss_dssp HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 45889999999999874
No 122
>2iqt_A Fructose-bisphosphate aldolase class 1; TIM berrel, structural genomics, PSI-2; 2.46A {Porphyromonas gingivalis}
Probab=33.86 E-value=16 Score=26.62 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=15.6
Q ss_pred hCCCCEEEEecCCCccchHH
Q psy8530 32 ERRVPIVMLTSGGYLKQTAR 51 (68)
Q Consensus 32 ~~~IPva~v~gGGY~~d~~~ 51 (68)
-..+|=++.++|||+++.+.
T Consensus 230 ppaVpgVvfLSGGqSeeeAt 249 (296)
T 2iqt_A 230 HPMMLRVVALSGGYSREQAN 249 (296)
T ss_dssp STTEEEEEEECTTCCHHHHH
T ss_pred CCCCCeeeeCCCCCCHHHHH
Confidence 45678889999999976553
No 123
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha SA topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3
Probab=33.64 E-value=57 Score=21.13 Aligned_cols=26 Identities=12% Similarity=-0.083 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe
Q psy8530 16 HLGIIRRDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 16 ~~Gi~~RD~~V~~~a~~~~IPva~v~ 41 (68)
.+.+..+=..+++.|++.|+||+.+-
T Consensus 33 ~~~~i~~i~~l~~~ar~~g~pVi~t~ 58 (208)
T 1yac_A 33 PDKFKNNVLALGDLAKYFNLPTILTT 58 (208)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 46788888889999999999999887
No 124
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=33.59 E-value=38 Score=19.79 Aligned_cols=19 Identities=5% Similarity=0.134 Sum_probs=16.2
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
...+.+.+..|.++|+|.|
T Consensus 67 ~~tvs~~l~~Le~~Glv~r 85 (127)
T 2frh_A 67 QPQVVKAVKILSQEDYFDK 85 (127)
T ss_dssp HHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHCCCEEe
Confidence 4578889999999999975
No 125
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=33.58 E-value=43 Score=20.46 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=19.8
Q ss_pred HHHHHHHHhCCCCEEEEecCCCccchH
Q psy8530 24 ELVFMKARERRVPIVMLTSGGYLKQTA 50 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v~gGGY~~d~~ 50 (68)
.-+++.|.+.|++.+++..|.+..+..
T Consensus 91 ~~vv~~~~~~gi~~i~~~~g~~~~~l~ 117 (144)
T 2d59_A 91 MEYVEQAIKKGAKVVWFQYNTYNREAS 117 (144)
T ss_dssp HHHHHHHHHHTCSEEEECTTCCCHHHH
T ss_pred HHHHHHHHHcCCCEEEECCCchHHHHH
Confidence 456788888999998888887744333
No 126
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=33.40 E-value=28 Score=25.93 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=14.0
Q ss_pred HHHHHHhCCCCEEEEec
Q psy8530 26 VFMKARERRVPIVMLTS 42 (68)
Q Consensus 26 V~~~a~~~~IPva~v~g 42 (68)
|.+.|+++++||+++-|
T Consensus 311 Va~~A~~~~vPviaiaG 327 (383)
T 3cwc_A 311 VANIAKRYNKPVIGIAG 327 (383)
T ss_dssp HHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHhCCCEEEEeC
Confidence 66789999999987754
No 127
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4
Probab=33.33 E-value=1.1e+02 Score=23.31 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=27.8
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCCCEEEEe-cCCCccc
Q psy8530 13 LEDHLGIIRRDELVFMKARERRVPIVMLT-SGGYLKQ 48 (68)
Q Consensus 13 ~lS~~Gi~~RD~~V~~~a~~~~IPva~v~-gGGY~~d 48 (68)
.+..+|-.+=-++| ++|.+.++|++++. ..||...
T Consensus 345 ~~~~~~~~Kaar~i-~~a~~~~~Plv~lvDtpG~~~G 380 (527)
T 1vrg_A 345 VLDIDSSDKAARFI-RFLDAFNIPILTFVDTPGYLPG 380 (527)
T ss_dssp CBCHHHHHHHHHHH-HHHHHTTCCEEEEEEECCBCCC
T ss_pred CCCHHHHHHHHHHH-HHHhhcCCCeEEEecCCCCcCc
Confidence 46677777777777 99999999999998 6777653
No 128
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=33.09 E-value=99 Score=19.96 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=27.2
Q ss_pred HHHHHHHhCCCCEEEEec-----CCCc----cchHHHHHHHHHhHHH
Q psy8530 25 LVFMKARERRVPIVMLTS-----GGYL----KQTARIIADSILNLAD 62 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~g-----GGY~----~d~~~~v~~si~~l~~ 62 (68)
-.++.+++.+||++++-. .++. .|.........++|.+
T Consensus 75 ~~~~~~~~~giPvV~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~ 121 (330)
T 3uug_A 75 DVLKQAGEQGIKVIAYDRLIRNSGDVSYYATFDNFQVGVLQATSITD 121 (330)
T ss_dssp HHHHHHHHTTCEEEEESSCCCSCTTCCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCceeEEEEeCHHHHHHHHHHHHHH
Confidence 357788999999998742 2332 3567777778888888
No 129
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=32.98 E-value=18 Score=25.53 Aligned_cols=20 Identities=20% Similarity=0.527 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCCCCEEEEe
Q psy8530 22 RDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 22 RD~~V~~~a~~~~IPva~v~ 41 (68)
+|...+..|...|||+++++
T Consensus 169 ~e~~Ai~EA~~l~IPvIaiv 188 (256)
T 2vqe_B 169 KEAIAVREARKLFIPVIALA 188 (256)
T ss_dssp TTHHHHHHHHHTTCCCEECC
T ss_pred cchHHHHHHHHcCCCEEEEe
Confidence 67888999999999999886
No 130
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=32.97 E-value=16 Score=25.09 Aligned_cols=21 Identities=10% Similarity=0.374 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhCCCCEEEEe
Q psy8530 21 RRDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~ 41 (68)
.+|...+..|...|||++++.
T Consensus 159 ~~e~~ai~Ea~~l~IP~Ialv 179 (218)
T 3r8n_B 159 DHEHIAIKEANNLGIPVFAIV 179 (218)
T ss_dssp GGGHHHHHHHHHHTCCCEEEC
T ss_pred ccccHHHHHHHHhCCCEEEEE
Confidence 457888999999999999886
No 131
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=32.84 E-value=69 Score=22.08 Aligned_cols=25 Identities=4% Similarity=0.114 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCCEEEEecCCCccc
Q psy8530 24 ELVFMKARERRVPIVMLTSGGYLKQ 48 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v~gGGY~~d 48 (68)
.-+++.|.++|+|.++++..|++..
T Consensus 84 ~~~v~ea~~~Gi~~vVi~t~G~~~~ 108 (294)
T 2yv1_A 84 KDAVFEAIDAGIELIVVITEHIPVH 108 (294)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCCHH
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHH
Confidence 3467888999999888889999653
No 132
>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18
Probab=32.83 E-value=62 Score=19.00 Aligned_cols=29 Identities=10% Similarity=-0.122 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCCcc
Q psy8530 19 IIRRDELVFMKARERRVPIVMLTSGGYLK 47 (68)
Q Consensus 19 i~~RD~~V~~~a~~~~IPva~v~gGGY~~ 47 (68)
+..+....++.++++|++++.+.|-.|..
T Consensus 25 ~~~~~~~~l~~l~~~Gi~~~iaTGR~~~~ 53 (126)
T 1xpj_A 25 PRLDVIEQLREYHQLGFEIVISTARNMRT 53 (126)
T ss_dssp BCHHHHHHHHHHHHTTCEEEEEECTTTTT
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCChhh
Confidence 34567788999999999999999887754
No 133
>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
Probab=32.64 E-value=1.3e+02 Score=21.06 Aligned_cols=23 Identities=13% Similarity=-0.028 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhCCCCEEEEecC
Q psy8530 21 RRDELVFMKARERRVPIVMLTSG 43 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~gG 43 (68)
++=+..++.|++.|.|.+.+.+|
T Consensus 116 ~~~~~~i~~A~~LGa~~vvv~~G 138 (394)
T 1xla_A 116 AKVLHNIDLAAEMGAETFVMWGG 138 (394)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCT
T ss_pred HHHHHHHHHHHHhCCCEEEECCC
Confidence 44567899999999999988776
No 134
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=32.52 E-value=53 Score=26.25 Aligned_cols=32 Identities=22% Similarity=0.449 Sum_probs=20.2
Q ss_pred CCCEEEEe--cCCCccchHHHHHHHHHhHHHcCCcC
Q psy8530 34 RVPIVMLT--SGGYLKQTARIIADSILNLADLGLIS 67 (68)
Q Consensus 34 ~IPva~v~--gGGY~~d~~~~v~~si~~l~~~~~~~ 67 (68)
.+|...+. ||||..- -...-.++.|.+.|+++
T Consensus 186 ~~P~i~~~~SGGg~ra~--~~~~G~l~~l~~~gll~ 219 (749)
T 1cjy_A 186 DVPVVAILGSGGGFRAM--VGFSGVMKALYESGILD 219 (749)
T ss_dssp SCCCEEEEECCCHHHHH--HHHHHHHHHHHHTSCGG
T ss_pred cCceeEEEeccccHHHh--hcchhHHHHhhhCCCcc
Confidence 57777544 8888432 22344677788888875
No 135
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}
Probab=32.37 E-value=37 Score=19.84 Aligned_cols=22 Identities=5% Similarity=0.049 Sum_probs=17.6
Q ss_pred HHHHHhCCCCEEEEecCCCccc
Q psy8530 27 FMKARERRVPIVMLTSGGYLKQ 48 (68)
Q Consensus 27 ~~~a~~~~IPva~v~gGGY~~d 48 (68)
+++|+..|++++++-.|++...
T Consensus 175 i~~a~~aG~~~~~~~~~~~~~~ 196 (214)
T 3e58_A 175 IAAGVAADVEVWAIRDNEFGMD 196 (214)
T ss_dssp HHHHHHTTCEEEEECCSSSCCC
T ss_pred HHHHHHCCCEEEEECCCCccch
Confidence 5678889999999888777653
No 136
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=32.04 E-value=96 Score=19.48 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=25.3
Q ss_pred HHHHHHh-CCCCEEEEecC--C-----CccchHHHHHHHHHhHHHcC
Q psy8530 26 VFMKARE-RRVPIVMLTSG--G-----YLKQTARIIADSILNLADLG 64 (68)
Q Consensus 26 V~~~a~~-~~IPva~v~gG--G-----Y~~d~~~~v~~si~~l~~~~ 64 (68)
.++.+.+ .+||++++-.. + ...|.........++|.++|
T Consensus 92 ~~~~l~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~l~~~G 138 (296)
T 3brq_A 92 EIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFNAVAELINAG 138 (296)
T ss_dssp HHHHHHHTCSSCEEEESCCCSSSGGGEECCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCCEEEEccccCCCCCCEEEEchHHHHHHHHHHHHHCC
Confidence 4567777 89999877421 1 12245666677778888875
No 137
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=31.99 E-value=23 Score=20.72 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=16.2
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
..++...+.+|-+||+|.|
T Consensus 50 ~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 50 LTEINKILKNLESKKLIKA 68 (91)
T ss_dssp HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHCCCEEE
Confidence 3579999999999999863
No 138
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=31.99 E-value=44 Score=20.15 Aligned_cols=22 Identities=5% Similarity=-0.079 Sum_probs=17.5
Q ss_pred HHHHHhCCCCEEEEecCCCccc
Q psy8530 27 FMKARERRVPIVMLTSGGYLKQ 48 (68)
Q Consensus 27 ~~~a~~~~IPva~v~gGGY~~d 48 (68)
++.|++.|++.++.+..||+..
T Consensus 170 i~aA~~aG~~~i~~v~~g~~~~ 191 (216)
T 3kbb_A 170 VEAAKSAGIERIYGVVHSLNDG 191 (216)
T ss_dssp HHHHHHTTCCCEEEECCSSSCC
T ss_pred HHHHHHcCCcEEEEecCCCCCH
Confidence 5789999999987777777654
No 139
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=31.66 E-value=73 Score=21.98 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCCCEEEEecCCCccc
Q psy8530 24 ELVFMKARERRVPIVMLTSGGYLKQ 48 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v~gGGY~~d 48 (68)
.-+++.|.++|+|.++++..|+..+
T Consensus 85 ~~~v~ea~~~Gi~~vVi~t~G~~~~ 109 (297)
T 2yv2_A 85 PDAVYEAVDAGIRLVVVITEGIPVH 109 (297)
T ss_dssp HHHHHHHHHTTCSEEEECCCCCCHH
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHH
Confidence 3467889999999888888899653
No 140
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=31.58 E-value=95 Score=19.28 Aligned_cols=40 Identities=13% Similarity=0.099 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCCCEEEEec----CCC----ccchHHHHHHHHHhHHHc
Q psy8530 24 ELVFMKARERRVPIVMLTS----GGY----LKQTARIIADSILNLADL 63 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v~g----GGY----~~d~~~~v~~si~~l~~~ 63 (68)
.-.++.+.+.+||++++-. .++ ..|.........++|.++
T Consensus 74 ~~~~~~~~~~~ipvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~ 121 (276)
T 3ksm_A 74 TPSVAQYRARNIPVLVVDSDLAGDAHQGLVATDNYAAGQLAARALLAT 121 (276)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSSSCSSEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCCcceEEccCHHHHHHHHHHHHHHh
Confidence 3457788899999998742 222 246677777888888887
No 141
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum}
Probab=31.57 E-value=37 Score=21.84 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEe
Q psy8530 17 LGIIRRDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 17 ~Gi~~RD~~V~~~a~~~~IPva~v~ 41 (68)
+.+.++=..+++.|++.|+||+.+-
T Consensus 35 ~~~i~~i~~l~~~ar~~g~pVi~~~ 59 (198)
T 3mcw_A 35 PQAEQACAGLLQAWRARGLPLIHIR 59 (198)
T ss_dssp TTHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5677888889999999999999885
No 142
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=31.57 E-value=1e+02 Score=19.63 Aligned_cols=39 Identities=13% Similarity=0.033 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhCCCCEEEEecCCCcc-chHHHHHHHHHhH
Q psy8530 22 RDELVFMKARERRVPIVMLTSGGYLK-QTARIIADSILNL 60 (68)
Q Consensus 22 RD~~V~~~a~~~~IPva~v~gGGY~~-d~~~~v~~si~~l 60 (68)
+=+..++.|...|.|.+.+..|.+.. +.+...++.+++|
T Consensus 90 ~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l 129 (287)
T 2x7v_A 90 LLKKEVEICRKLGIRYLNIHPGSHLGTGEEEGIDRIVRGL 129 (287)
T ss_dssp HHHHHHHHHHHHTCCEEEECCEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 34567899999999999877664432 3344444444443
No 143
>2wmf_A Fucolectin-related protein; hydrolase, glycoside hydrolase, blood group antigen, fucose utilization; 1.50A {Streptococcus pneumoniae} PDB: 2wmh_A* 2wmg_A*
Probab=31.54 E-value=34 Score=27.17 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=19.1
Q ss_pred HHHHHHHhCCCCEEEE--ecCCCcc
Q psy8530 25 LVFMKARERRVPIVML--TSGGYLK 47 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v--~gGGY~~ 47 (68)
.-|+.|.+.+||++++ .+||.+.
T Consensus 103 ~~Lk~aa~~~ip~~l~~~saG~~~~ 127 (581)
T 2wmf_A 103 KMLEEAQSLNIPVFLVIMSAGERNT 127 (581)
T ss_dssp HHHHHHHHHTCCEEEEEEETTCSSC
T ss_pred HHHHHHHhcCCcEEEEccCCCCcCc
Confidence 4689999999999977 3699873
No 144
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=31.34 E-value=1e+02 Score=19.63 Aligned_cols=39 Identities=13% Similarity=0.099 Sum_probs=25.6
Q ss_pred HHHHHHhCCCCEEEEecC--C-----CccchHHHHHHHHHhHHHcC
Q psy8530 26 VFMKARERRVPIVMLTSG--G-----YLKQTARIIADSILNLADLG 64 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gG--G-----Y~~d~~~~v~~si~~l~~~~ 64 (68)
.++.+++.+||++++-.- + ...|.........++|.++|
T Consensus 82 ~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G 127 (290)
T 2rgy_A 82 DLDELHRMHPKMVFLNRAFDALPDASFCPDHRRGGELAAATLIEHG 127 (290)
T ss_dssp HHHHHHHHCSSEEEESSCCTTSGGGEECCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcCCCEEEEccccCCCCCCEEEeCcHHHHHHHHHHHHHCC
Confidence 456677789999876321 1 12345666777888888875
No 145
>3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, P structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides thetaiotaomicron} PDB: 3co4_A
Probab=31.27 E-value=1.1e+02 Score=20.90 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=25.7
Q ss_pred HHHHHHHhCCCCEEEEecCCCccchHH---------HHHHHHHhHHHcC
Q psy8530 25 LVFMKARERRVPIVMLTSGGYLKQTAR---------IIADSILNLADLG 64 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gGGY~~d~~~---------~v~~si~~l~~~~ 64 (68)
.+.+.|++.++.|...+||.-+..... ....||.++.++.
T Consensus 56 ~~~~k~~~~~lkvllsiGG~~~~~~~~~~~~~~~r~~fi~si~~~~~~~ 104 (312)
T 3fnd_A 56 SVRETAHKHNVKILISLAKNSPGEFTTAINDPKARKELIQQIIAFTKEY 104 (312)
T ss_dssp HHHHHHHHTTCEEEEEEEESSTTHHHHHHHSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCEEEEEEcCCCCchhhHHhCCHHHHHHHHHHHHHHHHHc
Confidence 344588999999999998764433222 3345666666654
No 146
>3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp}
Probab=31.10 E-value=28 Score=21.67 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=14.4
Q ss_pred CCCEEEEe-cCCCccchHHHHHHHHHhHHHcC
Q psy8530 34 RVPIVMLT-SGGYLKQTARIIADSILNLADLG 64 (68)
Q Consensus 34 ~IPva~v~-gGGY~~d~~~~v~~si~~l~~~~ 64 (68)
.-|++..+ ||||..........-+..|.++|
T Consensus 42 ~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G 73 (276)
T 3hxk_A 42 TFPAIIICPGGGYQHISQRESDPLALAFLAQG 73 (276)
T ss_dssp CBCEEEEECCSTTTSCCGGGSHHHHHHHHHTT
T ss_pred CCCEEEEEcCCccccCCchhhHHHHHHHHHCC
Confidence 45666555 66655333222233334444443
No 147
>3mu7_A XAIP-II, xylanase and alpha-amylase inhibitor protein; TIM barell, amylase/xylanase inhibitory protein, hydrolase I; 1.29A {Scadoxus multiflorus} SCOP: c.1.8.0 PDB: 3o9n_A 3oih_A* 3hu7_A 3m7s_A* 3d5h_A*
Probab=31.10 E-value=62 Score=22.72 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=24.0
Q ss_pred HHHHHHhCCCCEEEEecCC---Cccch---HHHHHHHHHhHH
Q psy8530 26 VFMKARERRVPIVMLTSGG---YLKQT---ARIIADSILNLA 61 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gGG---Y~~d~---~~~v~~si~~l~ 61 (68)
-++.|+++|+.|...+||+ |+-.. ++-++..+-+++
T Consensus 59 dI~~cQ~~G~kVlLSiGG~~g~~~l~s~~~a~~fa~~l~~~f 100 (273)
T 3mu7_A 59 QIKHCQSKNVKVLLSIGGPAGPYSLDSRNDANDLAVYLHKNF 100 (273)
T ss_dssp HHHHHHHTTCEEEEEEEESSCSBCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEEEeccCCCceecCCHHHHHHHHHHHHHHh
Confidence 3678999999999999885 33222 234555555554
No 148
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=31.08 E-value=33 Score=20.99 Aligned_cols=27 Identities=19% Similarity=0.042 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCCEEEEecCCCccchHH
Q psy8530 25 LVFMKARERRVPIVMLTSGGYLKQTAR 51 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gGGY~~d~~~ 51 (68)
-+++.|.+.+++.+++..|+++.+..+
T Consensus 85 ~v~~~~~~~gi~~i~~~~g~~~~~~~~ 111 (140)
T 1iuk_A 85 DHLPEVLALRPGLVWLQSGIRHPEFEK 111 (140)
T ss_dssp TTHHHHHHHCCSCEEECTTCCCHHHHH
T ss_pred HHHHHHHHcCCCEEEEcCCcCHHHHHH
Confidence 356778889999888888887544333
No 149
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A
Probab=31.07 E-value=44 Score=20.88 Aligned_cols=25 Identities=24% Similarity=0.135 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEe
Q psy8530 17 LGIIRRDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 17 ~Gi~~RD~~V~~~a~~~~IPva~v~ 41 (68)
+.+.++=..+++.|++.++||+.+-
T Consensus 27 ~~~v~~i~~l~~~ar~~g~pVi~t~ 51 (180)
T 1im5_A 27 DKIIPKVNEYIRKFKEKGALIVATR 51 (180)
T ss_dssp GGGHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 5678888889999999999999887
No 150
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=31.04 E-value=23 Score=26.71 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEe
Q psy8530 17 LGIIRRDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 17 ~Gi~~RD~~V~~~a~~~~IPva~v~ 41 (68)
+|+-.-=+.|++.|+++++|+.+++
T Consensus 135 ~GV~~qT~~v~~~a~~~~lp~i~fI 159 (548)
T 3vqt_A 135 KGVEAQTRKLMDVCRMRATPVMTFV 159 (548)
T ss_dssp TBSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcccccHHHHHHHHHhCCceEEEE
Confidence 5666677899999999999999887
No 151
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=30.92 E-value=45 Score=21.57 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhCCCCEEEEecC
Q psy8530 22 RDELVFMKARERRVPIVMLTSG 43 (68)
Q Consensus 22 RD~~V~~~a~~~~IPva~v~gG 43 (68)
+|..+++.++++|++++.+.|.
T Consensus 80 ~d~~~L~~L~~~G~~l~I~T~~ 101 (211)
T 3ij5_A 80 RDGYGIRCLITSDIDVAIITGR 101 (211)
T ss_dssp HHHHHHHHHHHTTCEEEEECSS
T ss_pred chHHHHHHHHHCCCEEEEEeCC
Confidence 4555999999999999888765
No 152
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=30.89 E-value=79 Score=20.21 Aligned_cols=23 Identities=22% Similarity=0.005 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCCCEEEEecCCC
Q psy8530 23 DELVFMKARERRVPIVMLTSGGY 45 (68)
Q Consensus 23 D~~V~~~a~~~~IPva~v~gGGY 45 (68)
=+..++.|.+.|.|.+.+..|.+
T Consensus 90 ~~~~i~~a~~lGa~~vv~h~g~~ 112 (270)
T 3aam_A 90 LADDLEKAALLGVEYVVVHPGSG 112 (270)
T ss_dssp HHHHHHHHHHHTCCEEEECCCBS
T ss_pred HHHHHHHHHHcCCCEEEECCCCC
Confidence 34567888889999887777666
No 153
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=30.85 E-value=65 Score=23.81 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=23.9
Q ss_pred HHHHHHHHHhCCCCEEEEecCC----CccchHHHHHH
Q psy8530 23 DELVFMKARERRVPIVMLTSGG----YLKQTARIIAD 55 (68)
Q Consensus 23 D~~V~~~a~~~~IPva~v~gGG----Y~~d~~~~v~~ 55 (68)
|...-+.|.+.| +++|+|+| |.+++..+.+.
T Consensus 169 D~~AH~~AL~~g--TIaVLg~Gld~~YP~~n~~L~~~ 203 (382)
T 3maj_A 169 DQAAHRASLSSG--TVAVLAGGHDKIYPAEHEDLLLD 203 (382)
T ss_dssp HHHHHHHHTTTC--EEEECSSCTTSCSSGGGHHHHHH
T ss_pred HHHHHHHHHhCC--eEEEECCCcCccCCHhhHHHHHH
Confidence 555666777788 88999999 88888876654
No 154
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=30.70 E-value=1e+02 Score=20.09 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=26.3
Q ss_pred HHHHHHhCCCCEEEEecC----CC---ccchHHHHHHHHHhHHHcC
Q psy8530 26 VFMKARERRVPIVMLTSG----GY---LKQTARIIADSILNLADLG 64 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gG----GY---~~d~~~~v~~si~~l~~~~ 64 (68)
.++.+.+.+||++++-.. ++ ..|.........++|.++|
T Consensus 131 ~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G 176 (332)
T 2hsg_A 131 HVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSG 176 (332)
T ss_dssp HHHHHTTSSSCEEEESCCCSCTTSCEEEECHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCEEEEccccCCCCCCEEEEChHHHHHHHHHHHHHCC
Confidence 466777889999876321 11 1245667777888888875
No 155
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=30.62 E-value=37 Score=22.57 Aligned_cols=16 Identities=19% Similarity=0.220 Sum_probs=14.0
Q ss_pred HHHHHHHhCCCCEEEE
Q psy8530 25 LVFMKARERRVPIVML 40 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v 40 (68)
.|-.+|.+++||++.|
T Consensus 77 li~alC~E~~Ip~i~V 92 (165)
T 2kg4_A 77 LIQAFCCENDINILRV 92 (165)
T ss_dssp HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 4678999999999887
No 156
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=30.62 E-value=1.1e+02 Score=19.55 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=26.7
Q ss_pred HHHHHHhCCCCEEEEecC----C-C---ccchHHHHHHHHHhHHHc
Q psy8530 26 VFMKARERRVPIVMLTSG----G-Y---LKQTARIIADSILNLADL 63 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gG----G-Y---~~d~~~~v~~si~~l~~~ 63 (68)
.++.+.+.+||++++-.. + + ..|.........++|.++
T Consensus 78 ~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~ 123 (305)
T 3g1w_A 78 TINKAVDAGIPIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAEL 123 (305)
T ss_dssp HHHHHHHTTCCEEEESSCCTTSCCSCEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCcEEEECCCCCCCceeEEECcCHHHHHHHHHHHHHHH
Confidence 577888899999887531 1 1 245566777788888877
No 157
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=30.56 E-value=66 Score=22.86 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=29.7
Q ss_pred HHHHHHH----HHHHHHHHHhC-CCCEEEEecCCCccchHHHH
Q psy8530 16 HLGIIRR----DELVFMKARER-RVPIVMLTSGGYLKQTARII 53 (68)
Q Consensus 16 ~~Gi~~R----D~~V~~~a~~~-~IPva~v~gGGY~~d~~~~v 53 (68)
..|.+.| |.+|-++..++ +...++.+|-|+..-..++-
T Consensus 67 nrG~~~Rt~~iD~~v~~fl~~~~~~~QVV~LGaGlDTr~~RL~ 109 (334)
T 3iei_A 67 NRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLK 109 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCSEEEEETCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCcCchHHHhc
Confidence 4577777 66777777776 78899999999987766654
No 158
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=30.31 E-value=36 Score=20.50 Aligned_cols=18 Identities=28% Similarity=0.100 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhCCCCEEE
Q psy8530 22 RDELVFMKARERRVPIVM 39 (68)
Q Consensus 22 RD~~V~~~a~~~~IPva~ 39 (68)
-=+.+.+.|+++||||.-
T Consensus 28 ~A~~I~e~A~e~gVPi~e 45 (93)
T 2vt1_B 28 CALAVRKYANEVGIPTVR 45 (93)
T ss_dssp HHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHcCCCEEE
Confidence 345678999999999973
No 159
>2b34_A F35G2.2, MAR1 ribonuclease; isochorismatase family, structural genomics, PSI, protein structure initiative; 2.14A {Caenorhabditis elegans}
Probab=30.23 E-value=71 Score=20.57 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe
Q psy8530 16 HLGIIRRDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 16 ~~Gi~~RD~~V~~~a~~~~IPva~v~ 41 (68)
.+.+..+=..+++.|++.|+||+.+-
T Consensus 33 ~~~~i~~i~~l~~~ar~~g~pVi~t~ 58 (199)
T 2b34_A 33 FPEIITTSRRLIDAARILSIPTIVTE 58 (199)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 45677888889999999999999885
No 160
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=30.20 E-value=32 Score=24.16 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=23.2
Q ss_pred HHhCCCCEEEEecCCCccchHHHHHHHHHhHHH
Q psy8530 30 ARERRVPIVMLTSGGYLKQTARIIADSILNLAD 62 (68)
Q Consensus 30 a~~~~IPva~v~gGGY~~d~~~~v~~si~~l~~ 62 (68)
|..++|||+.+-+.|++...++.+-..+.++..
T Consensus 83 ~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R 115 (315)
T 3pp8_A 83 MLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFR 115 (315)
T ss_dssp SSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHT
T ss_pred hhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHh
Confidence 577899999888888877777766666666654
No 161
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A
Probab=30.11 E-value=38 Score=20.70 Aligned_cols=19 Identities=21% Similarity=0.524 Sum_probs=15.6
Q ss_pred HHHHHHHhCCCCEEEEecC
Q psy8530 25 LVFMKARERRVPIVMLTSG 43 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gG 43 (68)
-+++.++++|+|++.+.++
T Consensus 93 ~~l~~L~~~g~~~~i~T~~ 111 (225)
T 1nnl_A 93 ELVSRLQERNVQVFLISGG 111 (225)
T ss_dssp HHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHCCCcEEEEeCC
Confidence 3688889999999888765
No 162
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=30.10 E-value=20 Score=25.89 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEe
Q psy8530 21 RRDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~ 41 (68)
.+|...+..|...|||++++.
T Consensus 128 ~~e~~AI~EA~~lgIPvIalv 148 (295)
T 2zkq_b 128 RADHQPLTEASYVNLPTIALC 148 (295)
T ss_dssp TTTHHHHHHHHHHTCCEEEEE
T ss_pred CcchhHHHHHHHhCCCEEEEe
Confidence 467888999999999999887
No 163
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=30.10 E-value=61 Score=23.01 Aligned_cols=26 Identities=8% Similarity=0.029 Sum_probs=19.1
Q ss_pred HHHHHHHhCCCCEEEEecCCCccchHH
Q psy8530 25 LVFMKARERRVPIVMLTSGGYLKQTAR 51 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gGGY~~d~~~ 51 (68)
++.+.|+++|||.-.+.+| ++.|...
T Consensus 273 ~l~~~a~~~gIp~q~~~~g-gGtDa~~ 298 (355)
T 3kl9_A 273 FLLTTAEEAGIKYQYYCGK-GGTDAGA 298 (355)
T ss_dssp HHHHHHHHTTCCEEEEECS-SCCTHHH
T ss_pred HHHHHHHHcCCCEEEECCC-cchHHHH
Confidence 5778999999999985554 4666543
No 164
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=30.05 E-value=36 Score=21.21 Aligned_cols=29 Identities=21% Similarity=0.164 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEecC
Q psy8530 15 DHLGIIRRDELVFMKARERRVPIVMLTSG 43 (68)
Q Consensus 15 S~~Gi~~RD~~V~~~a~~~~IPva~v~gG 43 (68)
|.-|=-.-=..+++.|+++|+|++++.+-
T Consensus 121 S~SG~t~~~i~~~~~ak~~g~~vI~IT~~ 149 (199)
T 1x92_A 121 STSGNSANVIQAIQAAHDREMLVVALTGR 149 (199)
T ss_dssp CSSSCCHHHHHHHHHHHHTTCEEEEEECT
T ss_pred eCCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 33343333345788999999999998863
No 165
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans}
Probab=29.84 E-value=55 Score=21.49 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEe
Q psy8530 15 DHLGIIRRDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 15 S~~Gi~~RD~~V~~~a~~~~IPva~v~ 41 (68)
..+.+.++=..+++.|++.++||+.+-
T Consensus 29 ~~~~~i~~i~~Ll~~ar~~g~pVi~t~ 55 (211)
T 3oqp_A 29 DVQSSLANIARAMDAARAAGVPVVIVQ 55 (211)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 457888888999999999999999875
No 166
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=29.77 E-value=23 Score=20.29 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=15.3
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
..+|.+-+..|.++|+|.|
T Consensus 30 ~~TIRrdL~~Le~~G~l~R 48 (78)
T 1xn7_A 30 QPMINAMLQQLESMGKAVR 48 (78)
T ss_dssp HHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHHCCCEEE
Confidence 4578888888988888865
No 167
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=29.75 E-value=1.2e+02 Score=19.87 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCCEEEEecC--C-----CccchHHHHHHHHHhHHHcC
Q psy8530 24 ELVFMKARERRVPIVMLTSG--G-----YLKQTARIIADSILNLADLG 64 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v~gG--G-----Y~~d~~~~v~~si~~l~~~~ 64 (68)
..+.+.+++.+||++++-.. + ...|.........++|.++|
T Consensus 133 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G 180 (338)
T 3dbi_A 133 DEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFNAVAELINAG 180 (338)
T ss_dssp HHHHHHHHHCSSCEEEESSCCSSSGGGEECBCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCEEEEcCCCCCCCCCEEEEChHHHHHHHHHHHHHCC
Confidence 34567788889998876321 1 12356777788888998876
No 168
>3kl2_A Putative isochorismatase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.30A {Streptomyces avermitilis} SCOP: c.33.1.0
Probab=29.67 E-value=47 Score=21.89 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEe
Q psy8530 17 LGIIRRDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 17 ~Gi~~RD~~V~~~a~~~~IPva~v~ 41 (68)
+.+.++=..+++.|++.|+||+.+-
T Consensus 55 ~~vv~~i~~Ll~~ar~~g~pVi~~~ 79 (226)
T 3kl2_A 55 TGMLANTVAVVDAARQAGVPIMHAP 79 (226)
T ss_dssp HTHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4567777788999999999999875
No 169
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=29.67 E-value=96 Score=20.36 Aligned_cols=24 Identities=17% Similarity=-0.051 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhCCCCEEEEecCCC
Q psy8530 22 RDELVFMKARERRVPIVMLTSGGY 45 (68)
Q Consensus 22 RD~~V~~~a~~~~IPva~v~gGGY 45 (68)
+=+..++.|.+.|+|.+.+..|..
T Consensus 112 ~~~~~i~~A~~lGa~~v~~~~g~~ 135 (340)
T 2zds_A 112 EIKDTARAAARLGVDTVIGFTGSA 135 (340)
T ss_dssp HHHHHHHHHHHHTCSEEEECCCCS
T ss_pred HHHHHHHHHHHcCCCEEEEecCCc
Confidence 345678999999999998876654
No 170
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris}
Probab=29.63 E-value=53 Score=21.13 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe
Q psy8530 16 HLGIIRRDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 16 ~~Gi~~RD~~V~~~a~~~~IPva~v~ 41 (68)
.+.+..+=..+++.|++.++||+.+.
T Consensus 32 ~~~iv~~i~~L~~~ar~~g~pVi~~~ 57 (204)
T 3hu5_A 32 AMGTVPVIAGLLAKARAEGWMVLHVV 57 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 46778888889999999999999864
No 171
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=29.57 E-value=19 Score=27.74 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe
Q psy8530 16 HLGIIRRDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 16 ~~Gi~~RD~~V~~~a~~~~IPva~v~ 41 (68)
.+|+-..-+.|++.|.++++|.+.++
T Consensus 119 veGV~~qT~~v~~~a~~~~lp~i~~i 144 (709)
T 4fn5_A 119 TSGVEPQSETVWRQANKYGVPRIVYV 144 (709)
T ss_dssp TTCSCHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 36777788999999999999999887
No 172
>1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus thermophilus} SCOP: c.1.15.3 PDB: 1bxc_A
Probab=29.57 E-value=46 Score=23.30 Aligned_cols=21 Identities=14% Similarity=0.020 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCCCEEEEecC
Q psy8530 23 DELVFMKARERRVPIVMLTSG 43 (68)
Q Consensus 23 D~~V~~~a~~~~IPva~v~gG 43 (68)
=+..++.|.+.|.|.+.+.+|
T Consensus 118 ~~~~i~~A~~LGa~~vv~~~G 138 (387)
T 1bxb_A 118 SLETMDLGAELGAEIYVVWPG 138 (387)
T ss_dssp HHHHHHHHHHHTCCEEEECCT
T ss_pred HHHHHHHHHHhCCCEEEECCC
Confidence 356788999999999977665
No 173
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=29.55 E-value=94 Score=19.78 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=23.6
Q ss_pred HHHHHHhCCCCEEEEecC--C----CccchHHHHHHHHHhHHHcC
Q psy8530 26 VFMKARERRVPIVMLTSG--G----YLKQTARIIADSILNLADLG 64 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gG--G----Y~~d~~~~v~~si~~l~~~~ 64 (68)
.++.+++.+||++++-.. + ...|.........++|.++|
T Consensus 80 ~~~~l~~~~iPvV~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G 124 (290)
T 3clk_A 80 NLQLLQSSDVPYCFLSMGFDDDRPFISSDDEDIGYQATNLLINEG 124 (290)
T ss_dssp CHHHHHCC--CEEEESCC--CCSCEEECCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCEEEEcCCCCCCCCEEEeChHHHHHHHHHHHHHcC
Confidence 456777889999876321 1 12345666777778888765
No 174
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=29.49 E-value=91 Score=20.91 Aligned_cols=38 Identities=8% Similarity=-0.059 Sum_probs=20.9
Q ss_pred HHHHHHHHhCCCCEEEEecCCCccchHHHHHHHHHhHHHc
Q psy8530 24 ELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADL 63 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v~gGGY~~d~~~~v~~si~~l~~~ 63 (68)
....+.|+..+.||+.|...+-. .-.-+..+++.|.++
T Consensus 151 ~~~adlA~~l~~pVILV~~~~lg--~i~~~~lt~~~l~~~ 188 (242)
T 3qxc_A 151 ENMLDFALKLKAKMLLISHDNLG--LINDCLLNDFLLKSH 188 (242)
T ss_dssp CBHHHHHHHHTCEEEEEECCSTT--HHHHHHHHHHHHHTS
T ss_pred chHHHHHHHcCCCEEEEEcCCCc--HHHHHHHHHHHHHhC
Confidence 34566677777777777755543 222234455555443
No 175
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=29.43 E-value=96 Score=21.36 Aligned_cols=35 Identities=23% Similarity=0.501 Sum_probs=26.6
Q ss_pred HHhCCCCEEEEe---cCC--CccchHHHHHHHHHhHHHcC
Q psy8530 30 ARERRVPIVMLT---SGG--YLKQTARIIADSILNLADLG 64 (68)
Q Consensus 30 a~~~~IPva~v~---gGG--Y~~d~~~~v~~si~~l~~~~ 64 (68)
|+..+|||-+++ ||+ |+.+--++....|..+.+.|
T Consensus 50 ~~~~~ipV~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~G 89 (224)
T 2bdq_A 50 LHEKGISVAVMIRPRGGNFVYNDLELRIMEEDILRAVELE 89 (224)
T ss_dssp HHHTTCEEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTT
T ss_pred hhhcCCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcC
Confidence 567899999998 555 66666667777888877764
No 176
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B
Probab=29.38 E-value=31 Score=26.75 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhCCCCEEEEe--cCCC
Q psy8530 21 RRDELVFMKARERRVPIVMLT--SGGY 45 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~--gGGY 45 (68)
++=..+++.|.+.++|++++. ||.+
T Consensus 143 ~Ki~ra~e~A~~~~lPvI~l~dSgGAR 169 (555)
T 3u9r_B 143 KKHLRAQAIALENRLPCIYLVDSGGAN 169 (555)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCBC
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 455578899999999999888 5555
No 177
>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}
Probab=29.25 E-value=34 Score=20.69 Aligned_cols=22 Identities=9% Similarity=-0.091 Sum_probs=18.3
Q ss_pred HHHHHhCCCCEEEEecCCCccc
Q psy8530 27 FMKARERRVPIVMLTSGGYLKQ 48 (68)
Q Consensus 27 ~~~a~~~~IPva~v~gGGY~~d 48 (68)
+++|+..|++++++..||...+
T Consensus 185 i~~a~~~G~~~~~v~~~~~~~~ 206 (233)
T 3umb_A 185 ACGATWHGFTTFWINRLGHPPE 206 (233)
T ss_dssp HHHHHHHTCEEEEECTTCCCCC
T ss_pred HHHHHHcCCEEEEEcCCCCCch
Confidence 4778889999999998887654
No 178
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=29.23 E-value=38 Score=19.22 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhCCCCEEEEe
Q psy8530 22 RDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 22 RD~~V~~~a~~~~IPva~v~ 41 (68)
.-..+-..|..++||+..+-
T Consensus 41 ~~~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 41 LTSSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp HHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHHHcCCCEEEEC
Confidence 44567889999999999864
No 179
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=29.22 E-value=38 Score=20.97 Aligned_cols=31 Identities=26% Similarity=0.086 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEecCC
Q psy8530 14 EDHLGIIRRDELVFMKARERRVPIVMLTSGG 44 (68)
Q Consensus 14 lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGG 44 (68)
+|.-|=-.-=..+++.|+++|+|++++.+-.
T Consensus 116 iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~ 146 (196)
T 2yva_A 116 ISTRGNSRDIVKAVEAAVTRDMTIVALTGYD 146 (196)
T ss_dssp ECSSSCCHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred EeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3333433333457889999999999998744
No 180
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=29.21 E-value=44 Score=20.43 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEecC
Q psy8530 15 DHLGIIRRDELVFMKARERRVPIVMLTSG 43 (68)
Q Consensus 15 S~~Gi~~RD~~V~~~a~~~~IPva~v~gG 43 (68)
|..|=-.-=...++.|+++|+|++++.+-
T Consensus 95 S~sG~t~~~~~~~~~ak~~g~~vi~IT~~ 123 (187)
T 3sho_A 95 SVWRYLRDTVAALAGAAERGVPTMALTDS 123 (187)
T ss_dssp CCSSCCHHHHHHHHHHHHTTCCEEEEESC
T ss_pred eCCCCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 33343333345678999999999998864
No 181
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=29.13 E-value=23 Score=24.78 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCCCCEEEEec
Q psy8530 22 RDELVFMKARERRVPIVMLTS 42 (68)
Q Consensus 22 RD~~V~~~a~~~~IPva~v~g 42 (68)
+|...+..|...|||++++.-
T Consensus 125 ~e~~ai~EA~~l~IPvIalvD 145 (241)
T 2xzm_B 125 SDFQAIKEASYVNIPVIALCD 145 (241)
T ss_dssp TTHHHHHHHTTTTCCEEECCC
T ss_pred cchHHHHHHHHhCCCEEEEec
Confidence 678889999999999999863
No 182
>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*
Probab=29.11 E-value=32 Score=20.30 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=17.3
Q ss_pred HHHHHHHHhCCCCEEEEecCC
Q psy8530 24 ELVFMKARERRVPIVMLTSGG 44 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v~gGG 44 (68)
+.+++.++++|++++.+.|+.
T Consensus 82 ~~~l~~l~~~g~~~~i~T~~~ 102 (211)
T 1l7m_A 82 EETIKELKNRGYVVAVVSGGF 102 (211)
T ss_dssp HHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEcCCc
Confidence 457899999999999887654
No 183
>4hlb_A Uncharacterized protein; alpha-lytic protease prodomain-like fold, structural genomic center for structural genomics, JCSG; 1.80A {Desulfovibrio piger}
Probab=29.06 E-value=37 Score=21.13 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=24.0
Q ss_pred hCCCCEEEEecCCCcc--chHHHHHHHHHhHHHcCCcC
Q psy8530 32 ERRVPIVMLTSGGYLK--QTARIIADSILNLADLGLIS 67 (68)
Q Consensus 32 ~~~IPva~v~gGGY~~--d~~~~v~~si~~l~~~~~~~ 67 (68)
..||-++.|-+---.. +...+..+||..|.+++...
T Consensus 50 akgidivfvaadrkmtraefsaiasrsirelkerfgfd 87 (115)
T 4hlb_A 50 AKGIDIVFVAADRKMTRAEFSAIASRSIRELKERFGFD 87 (115)
T ss_dssp SSCEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hcCCcEEEEeccchhhHHHHHHHHHHHHHHHHHHhCCC
Confidence 3566666666544332 34567788999999997653
No 184
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=29.06 E-value=1.2e+02 Score=19.91 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=25.7
Q ss_pred HHHHHHhCCCCEEEEecC----CC---ccchHHHHHHHHHhHHHcC
Q psy8530 26 VFMKARERRVPIVMLTSG----GY---LKQTARIIADSILNLADLG 64 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gG----GY---~~d~~~~v~~si~~l~~~~ 64 (68)
.++.+.+.+||++++-.. ++ ..|.........++|.++|
T Consensus 134 ~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G 179 (332)
T 2o20_A 134 IRTSLKNSRTPVVLVGTIDGDKEIPSVNIDYHLAAYQSTKKLIDSG 179 (332)
T ss_dssp HHHHHHHHCCCEEEESCCCTTSCSCEEECCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCEEEEccccCCCCCCEEEeChHHHHHHHHHHHHHCC
Confidence 456666789999876321 11 1245667777888888875
No 185
>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A {Bordetella bronchiseptica} PDB: 3uao_A
Probab=29.03 E-value=49 Score=22.19 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe
Q psy8530 16 HLGIIRRDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 16 ~~Gi~~RD~~V~~~a~~~~IPva~v~ 41 (68)
.+.+..+=..+++.|++.++||+.+-
T Consensus 67 ~~~vv~~i~~Ll~~aR~~g~pVI~t~ 92 (236)
T 3ot4_A 67 IAAAIETTRTVLAAARERGWAVAHSR 92 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 56778888889999999999999886
No 186
>3ebv_A Chinitase A; chitinase A, CHIA, glycosidase, structural genomics, unknown function, hydrolase, PSI-2, protein structure initiative; 1.50A {Streptomyces coelicolor}
Probab=28.97 E-value=73 Score=22.14 Aligned_cols=39 Identities=10% Similarity=0.034 Sum_probs=26.5
Q ss_pred HHHHHhCCCCEEEEecCCCc------cchHHHHHHHHHhHHHcCC
Q psy8530 27 FMKARERRVPIVMLTSGGYL------KQTARIIADSILNLADLGL 65 (68)
Q Consensus 27 ~~~a~~~~IPva~v~gGGY~------~d~~~~v~~si~~l~~~~~ 65 (68)
++.|++.++.|...+||.-. ....+....|+.+++++..
T Consensus 68 i~~~~~~g~kvllsiGG~~~s~~~~~~~~r~~f~~~~~~~~~~~~ 112 (302)
T 3ebv_A 68 VRAKQAAGKKVIISVGGEKGTVSVNSSASATNFANSVYSVMREYG 112 (302)
T ss_dssp HHHHHHTTCEEEEEEEETTCCCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCEEEEEEECCCCCcccCCHHHHHHHHHHHHHHHHHhC
Confidence 57788899999999977421 1224456677777777643
No 187
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A
Probab=28.96 E-value=31 Score=26.51 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhCCCCEEEEe-cCCC
Q psy8530 21 RRDELVFMKARERRVPIVMLT-SGGY 45 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~-gGGY 45 (68)
++=..+++.|.+.++|++.+. +||-
T Consensus 119 ~Ki~ra~e~A~~~~lP~I~l~dSgGa 144 (530)
T 3iav_A 119 QKIVKVMDFALKTGCPVVGINDSGGA 144 (530)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCSB
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCc
Confidence 455567899999999999888 5554
No 188
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=28.95 E-value=1.1e+02 Score=19.96 Aligned_cols=38 Identities=5% Similarity=-0.026 Sum_probs=26.7
Q ss_pred HHHHHHhCCCCEEEEecCC-----------C---ccchHHHHHHHHHhHHHc
Q psy8530 26 VFMKARERRVPIVMLTSGG-----------Y---LKQTARIIADSILNLADL 63 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gGG-----------Y---~~d~~~~v~~si~~l~~~ 63 (68)
.++.+.+.+||++++.+.. + ..|.........++|.++
T Consensus 120 ~~~~~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~ 171 (342)
T 1jx6_A 120 FVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKF 171 (342)
T ss_dssp HHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHH
Confidence 4567777899999875431 1 235667778888888887
No 189
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A
Probab=28.90 E-value=1.4e+02 Score=22.89 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=27.7
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCCCEEEEe-cCCCccchH
Q psy8530 13 LEDHLGIIRRDELVFMKARERRVPIVMLT-SGGYLKQTA 50 (68)
Q Consensus 13 ~lS~~Gi~~RD~~V~~~a~~~~IPva~v~-gGGY~~d~~ 50 (68)
.+..+|..+=-++| ++|-+.+||++++. -.||....+
T Consensus 347 ~l~~~~a~Kaarfi-~~c~~~~iPlv~lvDtpGf~~G~~ 384 (530)
T 3iav_A 347 CLDITASEKAARFV-RTCDAFNVPVLTFVDVPGFLPGVD 384 (530)
T ss_dssp CBCHHHHHHHHHHH-HHHHHTTCCEEEEEEECCBCCCHH
T ss_pred CCCHHHHHHHHHHH-HHHHhcCCCEEEEeeCCCCCccHH
Confidence 36677776656666 89999999999988 666776554
No 190
>3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1}
Probab=28.82 E-value=64 Score=20.18 Aligned_cols=30 Identities=13% Similarity=0.329 Sum_probs=13.4
Q ss_pred CCCEEEEe-cCCCccchHHHHHHHHHhHHHc
Q psy8530 34 RVPIVMLT-SGGYLKQTARIIADSILNLADL 63 (68)
Q Consensus 34 ~IPva~v~-gGGY~~d~~~~v~~si~~l~~~ 63 (68)
+-|++..+ ||||..........-+..|.++
T Consensus 49 ~~p~vv~lHGgg~~~~~~~~~~~~~~~l~~~ 79 (283)
T 3bjr_A 49 NLPAIIIVPGGSYTHIPVAQAESLAMAFAGH 79 (283)
T ss_dssp CEEEEEEECCSTTTCCCHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCccccCCccccHHHHHHHHhC
Confidence 44555444 6666433333333333444444
No 191
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A*
Probab=28.79 E-value=52 Score=21.05 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEec
Q psy8530 17 LGIIRRDELVFMKARERRVPIVMLTS 42 (68)
Q Consensus 17 ~Gi~~RD~~V~~~a~~~~IPva~v~g 42 (68)
+.+.++=..+++.|++.|+||+.+--
T Consensus 53 ~~~i~~i~~l~~~ar~~g~pVi~t~~ 78 (207)
T 1nf9_A 53 AGLVANAARLRRWCVEQGVQIAYTAQ 78 (207)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEee
Confidence 45667777889999999999998863
No 192
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}
Probab=28.75 E-value=32 Score=26.22 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEe-cCC
Q psy8530 21 RRDELVFMKARERRVPIVMLT-SGG 44 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~-gGG 44 (68)
++=..+++.|.+.++|++++. +||
T Consensus 113 ~Ki~ra~e~A~~~~~P~I~l~~SGG 137 (522)
T 1x0u_A 113 NKIVRAYELALKVGAPVVGINDSGG 137 (522)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCS
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCC
Confidence 555678999999999999888 444
No 193
>3god_A CAS1; crispr, metallonuclease, DNAse, prokaryotic immune system, immune system; 2.17A {Pseudomonas aeruginosa}
Probab=28.70 E-value=37 Score=24.20 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=17.3
Q ss_pred HHHHHHhCCCCEEEEecCC
Q psy8530 26 VFMKARERRVPIVMLTSGG 44 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gGG 44 (68)
.+.+|-++||||.++-++|
T Consensus 74 am~~la~~gI~V~f~~~~G 92 (328)
T 3god_A 74 AMRELARAGVLVGFCGGGG 92 (328)
T ss_dssp HHHHHHHTTCEEEEECSTT
T ss_pred HHHHHHHCCCEEEEECCCC
Confidence 5789999999999999888
No 194
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=28.60 E-value=1e+02 Score=19.52 Aligned_cols=38 Identities=8% Similarity=-0.172 Sum_probs=26.2
Q ss_pred HHHHHHhCCCCEEEEecCC-------------CccchHHHHHHHHHhHHHcC
Q psy8530 26 VFMKARERRVPIVMLTSGG-------------YLKQTARIIADSILNLADLG 64 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gGG-------------Y~~d~~~~v~~si~~l~~~~ 64 (68)
.++.+. .+||++++-..- -..|.........++|.+++
T Consensus 80 ~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g 130 (304)
T 3o1i_D 80 NLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERH 130 (304)
T ss_dssp THHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhc
Confidence 366777 899999873221 13456677777888888876
No 195
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=28.59 E-value=1.2e+02 Score=19.46 Aligned_cols=23 Identities=9% Similarity=0.079 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEecC
Q psy8530 21 RRDELVFMKARERRVPIVMLTSG 43 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~gG 43 (68)
++=+..++.|...|+|.+.+..|
T Consensus 90 ~~~~~~i~~a~~lG~~~v~~~~~ 112 (301)
T 3cny_A 90 EAFEKHCQYLKAINAPVAVVSEQ 112 (301)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEecCC
Confidence 34456889999999999988764
No 196
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=28.59 E-value=25 Score=20.14 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=15.8
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
..+|.+.+..|.++|+|.|
T Consensus 42 ~~tv~~~l~~L~~~Glv~r 60 (123)
T 1okr_A 42 PKTIRTLITRLYKKGFIDR 60 (123)
T ss_dssp HHHHHHHHHHHHHHTSEEE
T ss_pred HhhHHHHHHHHHHCCCeEE
Confidence 4578888999999999865
No 197
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=28.40 E-value=35 Score=21.86 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=24.1
Q ss_pred HHHHHHHhCCCCEEEEecC-----C-----Cc---cchHHHHHHHHHhHHHc
Q psy8530 25 LVFMKARERRVPIVMLTSG-----G-----YL---KQTARIIADSILNLADL 63 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gG-----G-----Y~---~d~~~~v~~si~~l~~~ 63 (68)
-.++.+++.+||++++-.. | +. .|.........++|.++
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~ 124 (306)
T 8abp_A 73 AIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKE 124 (306)
T ss_dssp HHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHH
Confidence 4577888999999987521 1 11 25565555566666543
No 198
>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1
Probab=28.32 E-value=30 Score=20.66 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=16.3
Q ss_pred HHHHHHHHhCCCCEEEEecCCCc
Q psy8530 24 ELVFMKARERRVPIVMLTSGGYL 46 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v~gGGY~ 46 (68)
.++++...+.|.+ +.++-|||.
T Consensus 116 ~~~l~~l~~~G~~-v~~L~GG~~ 137 (154)
T 1hzm_A 116 GLLLKKLKDEGCR-AFYLEGGFS 137 (154)
T ss_dssp HHHHHHHHHTTCC-CEECCCCHH
T ss_pred HHHHHHHHHCCCc-eEEEcChHH
Confidence 3455655567999 889999984
No 199
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=28.31 E-value=51 Score=20.05 Aligned_cols=32 Identities=13% Similarity=0.101 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEecCCC
Q psy8530 14 EDHLGIIRRDELVFMKARERRVPIVMLTSGGY 45 (68)
Q Consensus 14 lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY 45 (68)
+|..|--.-=..+++.|+++|+|++++.+-.-
T Consensus 103 iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~ 134 (183)
T 2xhz_A 103 ISNSGESSEITALIPVLKRLHVPLICITGRPE 134 (183)
T ss_dssp ECSSSCCHHHHHHHHHHHTTTCCEEEEESCTT
T ss_pred EeCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 33334333444568889999999999887543
No 200
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=28.24 E-value=28 Score=18.97 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=15.8
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
..+|.+.+..|.++|+|.|
T Consensus 48 ~~tv~~~l~~L~~~glv~~ 66 (109)
T 1sfx_A 48 ARFVRDRLKVLLKRGFVRR 66 (109)
T ss_dssp HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHCCCEEE
Confidence 4578899999999999864
No 201
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}
Probab=28.22 E-value=34 Score=26.38 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhCCCCEEEEe--cCCCcc
Q psy8530 21 RRDELVFMKARERRVPIVMLT--SGGYLK 47 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~--gGGY~~ 47 (68)
++=..+++.|.+.++|++++. ||.+..
T Consensus 127 ~Ki~ra~e~A~~~~lPvI~l~dSGGARmq 155 (531)
T 3n6r_B 127 KKICKIMDMAMQNGAPVIGINDSGGARIQ 155 (531)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCBCGG
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccccC
Confidence 555668899999999999888 444543
No 202
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=28.18 E-value=44 Score=20.29 Aligned_cols=20 Identities=15% Similarity=0.110 Sum_probs=16.8
Q ss_pred HHHHHHHhCCCCEEEEecCC
Q psy8530 25 LVFMKARERRVPIVMLTSGG 44 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gGG 44 (68)
-+++.++++|+|++.+.++.
T Consensus 75 e~L~~L~~~G~~v~ivT~~~ 94 (187)
T 2wm8_A 75 EVLKRLQSLGVPGAAASRTS 94 (187)
T ss_dssp HHHHHHHHHTCCEEEEECCS
T ss_pred HHHHHHHHCCceEEEEeCCC
Confidence 47888999999999888765
No 203
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli}
Probab=28.02 E-value=77 Score=21.36 Aligned_cols=26 Identities=8% Similarity=0.121 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEec
Q psy8530 17 LGIIRRDELVFMKARERRVPIVMLTS 42 (68)
Q Consensus 17 ~Gi~~RD~~V~~~a~~~~IPva~v~g 42 (68)
+.+.++=..+++.|++.|+||+.+--
T Consensus 56 ~~~i~~i~~L~~~ar~~g~pVi~t~~ 81 (287)
T 2fq1_A 56 EQVIANIAALRDYCKQHNIPVYYTAQ 81 (287)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEee
Confidence 56777888899999999999998864
No 204
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=27.98 E-value=94 Score=21.32 Aligned_cols=25 Identities=16% Similarity=0.305 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCCEEEEecCCCccc
Q psy8530 24 ELVFMKARERRVPIVMLTSGGYLKQ 48 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v~gGGY~~d 48 (68)
.-+++.|.++|+|.++++..|++..
T Consensus 78 ~~~~~ea~~~Gi~~vVi~t~G~~~~ 102 (288)
T 1oi7_A 78 ADAALEAAHAGIPLIVLITEGIPTL 102 (288)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCCHH
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHH
Confidence 4467888999999888888999753
No 205
>4axn_A Chitinase C1; hydrolase; 1.68A {Serratia marcescens}
Probab=27.81 E-value=1.5e+02 Score=20.26 Aligned_cols=51 Identities=10% Similarity=0.040 Sum_probs=33.3
Q ss_pred cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCc-----cchHHHHHHHHHhHHHcCC
Q psy8530 11 DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYL-----KQTARIIADSILNLADLGL 65 (68)
Q Consensus 11 ~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~-----~d~~~~v~~si~~l~~~~~ 65 (68)
--..+.+.+.+ -+..|+++|+-|...+||.-+ ....+....|+..++++..
T Consensus 77 ~~~~~~~~~~~----~i~~~~~~g~kvllSiGG~~~~~~~~~~~r~~F~~s~~~~l~~yg 132 (328)
T 4axn_A 77 PYNLSDTEFRR----QVGVLNSQGRAVLISLGGADAHIELKTGDEDKLKDEIIRLVEVYG 132 (328)
T ss_dssp CSSSCHHHHHH----HHHHHHHTTCEEEEEEEETTCCCCCCTTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCHHHHHH----HHHHHHHCCCEEEEEeCCCCCCccCChHHHHHHHHHHHHHHHHhC
Confidence 33455655443 267899999999999987532 2234456678888877643
No 206
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=27.74 E-value=39 Score=24.96 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=15.4
Q ss_pred HHHHHHHhCCCCEEEEecCC
Q psy8530 25 LVFMKARERRVPIVMLTSGG 44 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gGG 44 (68)
.++++|.++++|+... |||
T Consensus 71 ~~v~~a~~~~~pv~~~-g~G 89 (520)
T 1wvf_A 71 GVVKICNEHKIPIWTI-STG 89 (520)
T ss_dssp HHHHHHHHHTCCEEEE-SSC
T ss_pred HHHHHHHHCCCcEEEE-cCC
Confidence 4789999999998765 555
No 207
>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, CY hydrolase; 1.60A {Pseudomonas syringae PV}
Probab=27.63 E-value=52 Score=21.80 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe
Q psy8530 16 HLGIIRRDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 16 ~~Gi~~RD~~V~~~a~~~~IPva~v~ 41 (68)
.+.+..+=..+++.|++.++||+.+-
T Consensus 46 ~~~vv~~i~~Ll~~ar~~g~pVi~t~ 71 (233)
T 3irv_A 46 TADIVQPIQKLLQAARAAQVMVIYLR 71 (233)
T ss_dssp GGGGHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 35677788889999999999999875
No 208
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Probab=27.60 E-value=1.5e+02 Score=22.55 Aligned_cols=40 Identities=23% Similarity=0.435 Sum_probs=26.0
Q ss_pred HHHHHHHHhCCCCEEEEec-------CCCccchHHHHHHHHHhHHHc
Q psy8530 24 ELVFMKARERRVPIVMLTS-------GGYLKQTARIIADSILNLADL 63 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v~g-------GGY~~d~~~~v~~si~~l~~~ 63 (68)
+.+++.|++.+-||..-.+ |||..-....+..-+..+.++
T Consensus 35 ~Ail~aAee~~sPVIIe~t~~qv~~~gGYtG~~p~~f~~~V~~~A~~ 81 (450)
T 3txv_A 35 EAAMLRAHREKAPVLIEATCNQVNQDGGYTGMTPEDFTRFVGAIADR 81 (450)
T ss_dssp HHHHHHHHHSCSCEEEEEETTTSCTTCTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEcChhhHhhcCCCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999986543 899632223344445555544
No 209
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=27.52 E-value=28 Score=20.58 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=15.7
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
..+|.+-+..|.++|+|.|
T Consensus 30 ~~TIRrDL~~Le~~G~l~R 48 (87)
T 2k02_A 30 QPLIDAMLERMEAMGKVVR 48 (87)
T ss_dssp HHHHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHHHHHHHCCCEEE
Confidence 4578888999999998875
No 210
>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6
Probab=27.45 E-value=42 Score=19.85 Aligned_cols=22 Identities=5% Similarity=0.209 Sum_probs=16.8
Q ss_pred HHHHHhCCCCEEEEecCCCccc
Q psy8530 27 FMKARERRVPIVMLTSGGYLKQ 48 (68)
Q Consensus 27 ~~~a~~~~IPva~v~gGGY~~d 48 (68)
+++++..|++++++-.|+.+.+
T Consensus 180 i~~a~~aG~~~~~~~~~~~~~~ 201 (226)
T 1te2_A 180 MIASKAARMRSIVVPAPEAQND 201 (226)
T ss_dssp HHHHHHTTCEEEECCCTTTTTC
T ss_pred HHHHHHcCCEEEEEcCCCCccc
Confidence 5678889999998887776543
No 211
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*
Probab=27.39 E-value=34 Score=26.15 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhCCCCEEEEe-cCC
Q psy8530 21 RRDELVFMKARERRVPIVMLT-SGG 44 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~-gGG 44 (68)
++=..+++.|.+.++|++++. +||
T Consensus 117 ~Ki~ra~e~A~~~~lP~I~l~~SGG 141 (523)
T 1on3_A 117 TKVVETMEQALLTGTPFLFFYDSGG 141 (523)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEECS
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCC
Confidence 555678999999999999887 444
No 212
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=27.36 E-value=43 Score=21.18 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=28.3
Q ss_pred HHHHHHHhCCCCEEEEecC----C---CccchHHHHHHHHHhHHHcC
Q psy8530 25 LVFMKARERRVPIVMLTSG----G---YLKQTARIIADSILNLADLG 64 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gG----G---Y~~d~~~~v~~si~~l~~~~ 64 (68)
-+++.+.+.+||++++-.- + -..|.........++|.++|
T Consensus 90 ~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G 136 (298)
T 3tb6_A 90 GYYLNLEKNGIPFAMINASYAELAAPSFTLDDVKGGMMAAEHLLSLG 136 (298)
T ss_dssp HHHHHHHHTTCCEEEESSCCTTCSSCEEEECHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCEEEEecCcCCCCCCEEEeCcHHHHHHHHHHHHHCC
Confidence 4677888999999987421 1 12356677778888888875
No 213
>3lfx_A Uncharacterized protein; CAS1, DNAse, prokaryotic immune system, structural genomics, protein structure initiative; 2.70A {Thermotoga maritima}
Probab=27.36 E-value=48 Score=23.31 Aligned_cols=20 Identities=25% Similarity=0.579 Sum_probs=16.7
Q ss_pred HHHHHHhCCCCEEEEecCCC
Q psy8530 26 VFMKARERRVPIVMLTSGGY 45 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gGGY 45 (68)
++.+|-++||||+++-.+|+
T Consensus 50 ~l~~l~~~gi~v~f~~~~G~ 69 (319)
T 3lfx_A 50 FLEFLSQKRIPIHFFNREGY 69 (319)
T ss_dssp HHHHHHHTTCCEEEECTTCC
T ss_pred HHHHHHHCCCeEEEECCCCC
Confidence 57899999999998876654
No 214
>2dsk_A Chitinase; catalytic domain, active domain, crystalline CHIT barrel, hydrolase; 1.50A {Pyrococcus furiosus} PDB: 3a4w_A* 3a4x_A* 3afb_A
Probab=27.26 E-value=83 Score=22.35 Aligned_cols=40 Identities=13% Similarity=0.044 Sum_probs=28.8
Q ss_pred HHHHHHhCCCCEEEEecCCCccch------HHHHHHHHHhHHHcCC
Q psy8530 26 VFMKARERRVPIVMLTSGGYLKQT------ARIIADSILNLADLGL 65 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gGGY~~d~------~~~v~~si~~l~~~~~ 65 (68)
-+..|+++|+-|...+||+-.... .+-++.++.++.++..
T Consensus 66 ~I~~~q~~G~kVllSiGGa~Gs~~~~s~~~~~~~a~~~~~~i~~yg 111 (311)
T 2dsk_A 66 EVRELREIGGEVIIAFGGAVGPYLCQQASTPEQLAEWYIKVIDTYN 111 (311)
T ss_dssp HHHHHHTTTCEEEEEEEESSCCCHHHHCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCeEEEEecCCCCccccccccCHHHHHHHHHHHHHHhC
Confidence 477899999999999998866542 3345556777776643
No 215
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A
Probab=27.24 E-value=35 Score=26.28 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhCCCCEEEEe-cCC
Q psy8530 21 RRDELVFMKARERRVPIVMLT-SGG 44 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~-gGG 44 (68)
++=..+++.|.+.++|++++. +||
T Consensus 130 ~Ki~ra~e~A~~~~lP~I~l~dSGG 154 (548)
T 2bzr_A 130 EKIVKVQELAIKTGRPLIGINDGAG 154 (548)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCS
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCC
Confidence 455668999999999999888 444
No 216
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=27.22 E-value=30 Score=24.42 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEe
Q psy8530 21 RRDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~ 41 (68)
.+|...+..|...|||++++.
T Consensus 127 ~~d~~ai~EA~~l~IP~Ial~ 147 (252)
T 3u5c_A 127 RSDAQAIKEASYVNIPVIALT 147 (252)
T ss_dssp TTTHHHHHHHHTTTCCEEEEE
T ss_pred ccchHHHHHHHHcCCCEEEEE
Confidence 367888999999999999876
No 217
>3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV}
Probab=27.21 E-value=52 Score=19.79 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=16.4
Q ss_pred HHHHHhCCCCEEEEecCCCcc
Q psy8530 27 FMKARERRVPIVMLTSGGYLK 47 (68)
Q Consensus 27 ~~~a~~~~IPva~v~gGGY~~ 47 (68)
+++|++.|++++++-.|+...
T Consensus 186 i~~a~~aG~~~~~v~~~~~~~ 206 (230)
T 3vay_A 186 IAGAQQAGMRAIWYNPQGKAW 206 (230)
T ss_dssp HHHHHHTTCEEEEECTTCCCC
T ss_pred HHHHHHCCCEEEEEcCCCCCC
Confidence 467888999998888777654
No 218
>1eok_A Endo-beta-N-acetylglucosaminidase F3; alpha/beta-barrel, hydrolase; 1.80A {Elizabethkingia meningoseptica} SCOP: c.1.8.5 PDB: 1eom_A*
Probab=27.12 E-value=65 Score=21.84 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=26.8
Q ss_pred HHHHHhCCCCEEEEecCCC--ccc------hHHHHHHHHHh-HHHcCC
Q psy8530 27 FMKARERRVPIVMLTSGGY--LKQ------TARIIADSILN-LADLGL 65 (68)
Q Consensus 27 ~~~a~~~~IPva~v~gGGY--~~d------~~~~v~~si~~-l~~~~~ 65 (68)
+..|+++++-|...+||.+ +.. ..+..+.|+.+ +.++..
T Consensus 72 i~~~q~~g~KVllSIGG~~~~~~~~~~~~~~r~~fa~s~~~~~l~~yg 119 (290)
T 1eok_A 72 IRSLQSRGIKVLQNIDDDVSWQSSKPGGFASAAAYGDAIKSIVIDKWK 119 (290)
T ss_dssp HHHHHTTTCEEEEEEECCGGGGSSSGGGSSSHHHHHHHHHHHHTTTTC
T ss_pred HHHHHhCCCEEEEEeCCCcCCCCccccchhHHHHHHHHHHHHHHHhcC
Confidence 5788999999999998833 221 23456677777 777643
No 219
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4
Probab=27.08 E-value=34 Score=26.13 Aligned_cols=29 Identities=10% Similarity=0.261 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhCCCCEEEEe--cCCCccc
Q psy8530 20 IRRDELVFMKARERRVPIVMLT--SGGYLKQ 48 (68)
Q Consensus 20 ~~RD~~V~~~a~~~~IPva~v~--gGGY~~d 48 (68)
.++=..+++.|.+.++|++++. ||.+..+
T Consensus 119 ~~Ki~r~~e~A~~~~lPvI~l~dSgGAR~qe 149 (527)
T 1vrg_A 119 AKKIVKLLDLALKMGIPVIGINDSGGARIQE 149 (527)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEEECSBCGGG
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCccc
Confidence 3555668899999999999887 5666543
No 220
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=27.07 E-value=33 Score=20.80 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhCCCCEE
Q psy8530 22 RDELVFMKARERRVPIV 38 (68)
Q Consensus 22 RD~~V~~~a~~~~IPva 38 (68)
-=+.+.+.|+++||||.
T Consensus 43 ~A~~I~~~A~e~gVPi~ 59 (97)
T 3t7y_A 43 RAKRIIAEAEKYGVPIM 59 (97)
T ss_dssp HHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHcCCeEE
Confidence 34567899999999997
No 221
>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens}
Probab=27.06 E-value=49 Score=20.40 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=16.3
Q ss_pred HHHHHhCCCCEEEEecCCCc
Q psy8530 27 FMKARERRVPIVMLTSGGYL 46 (68)
Q Consensus 27 ~~~a~~~~IPva~v~gGGY~ 46 (68)
+++++..|+++++|..|.|.
T Consensus 221 i~~a~~aG~~~~~v~~g~~~ 240 (271)
T 2x4d_A 221 VGGAQRCGMRALQVRTGKFR 240 (271)
T ss_dssp HHHHHHTTCEEEEESSTTCC
T ss_pred HHHHHHCCCcEEEEcCCCCC
Confidence 46788899999999887674
No 222
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=26.83 E-value=32 Score=20.46 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=17.4
Q ss_pred CccchHHHHHHHHHhHHHcCCcCC
Q psy8530 45 YLKQTARIIADSILNLADLGLISR 68 (68)
Q Consensus 45 Y~~d~~~~v~~si~~l~~~~~~~~ 68 (68)
+.++. ..|-.+|+.|++|+.|.|
T Consensus 55 F~p~~-~~IKk~IE~LIekeYleR 77 (88)
T 3o2p_E 55 FNAKV-SMVKRAIDSLIQKGYLQR 77 (88)
T ss_dssp CCCCH-HHHHHHHHHHHHTTSEEE
T ss_pred CCCCH-HHHHHHHHHHHhhhHHhc
Confidence 43344 468899999999998865
No 223
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=26.75 E-value=45 Score=20.54 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=16.9
Q ss_pred HHHHHHHHHhCCCCEEEEecC
Q psy8530 23 DELVFMKARERRVPIVMLTSG 43 (68)
Q Consensus 23 D~~V~~~a~~~~IPva~v~gG 43 (68)
=..+++.|+++|+|++++.+-
T Consensus 132 ~~~~~~~ak~~g~~vI~IT~~ 152 (198)
T 2xbl_A 132 ILAAFREAKAKGMTCVGFTGN 152 (198)
T ss_dssp HHHHHHHHHHTTCEEEEEECS
T ss_pred HHHHHHHHHHCCCeEEEEECC
Confidence 345778899999999998863
No 224
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=26.73 E-value=56 Score=19.91 Aligned_cols=20 Identities=10% Similarity=-0.041 Sum_probs=14.3
Q ss_pred HHHHHHHhCCCCEEEEecCCC
Q psy8530 25 LVFMKARERRVPIVMLTSGGY 45 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gGGY 45 (68)
-+++.|.++|++.++ +.-|+
T Consensus 73 ~~v~e~~~~g~k~v~-~~~G~ 92 (122)
T 3ff4_A 73 SEYNYILSLKPKRVI-FNPGT 92 (122)
T ss_dssp GGHHHHHHHCCSEEE-ECTTC
T ss_pred HHHHHHHhcCCCEEE-ECCCC
Confidence 467889999999655 54454
No 225
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}
Probab=26.57 E-value=1.6e+02 Score=22.61 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=27.1
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCCCEEEEe-cCCCccch
Q psy8530 13 LEDHLGIIRRDELVFMKARERRVPIVMLT-SGGYLKQT 49 (68)
Q Consensus 13 ~lS~~Gi~~RD~~V~~~a~~~~IPva~v~-gGGY~~d~ 49 (68)
.++.+|..+==++| ++|-+.+||++++. --||....
T Consensus 353 ~l~~~~a~Kaarfi-~lcd~~~iPlv~lvDtpGf~~G~ 389 (531)
T 3n6r_B 353 CLDIDSSRKAARFV-RFCDAFEIPLLTLIDVPGFLPGT 389 (531)
T ss_dssp CBCHHHHHHHHHHH-HHHHHTTCCEEEEEEECSBCCSH
T ss_pred CCCHHHHHHHHHHH-HHhhccCCCEEEEeCCCCCCCCH
Confidence 46777776666666 89999999999988 66775443
No 226
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=26.49 E-value=44 Score=20.40 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=16.0
Q ss_pred HHHHHHHHhCCCCEEEEec
Q psy8530 24 ELVFMKARERRVPIVMLTS 42 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v~g 42 (68)
...++.|+++|+|++++.+
T Consensus 127 ~~~~~~ak~~g~~vi~iT~ 145 (188)
T 1tk9_A 127 LEALKKAKELNMLCLGLSG 145 (188)
T ss_dssp HHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 4567889999999998876
No 227
>2j0p_A HEMS, hemin transport protein HEMS; conformational changes, HAEM, iron, trans ION transport, proteobacteria, iron transport; HET: HEM 12P; 1.7A {Yersinia enterocolitica} SCOP: e.62.1.1 PDB: 2j0r_A*
Probab=26.47 E-value=55 Score=23.85 Aligned_cols=43 Identities=12% Similarity=0.007 Sum_probs=33.5
Q ss_pred CCCCCCCCcc--cccCCHHHHHH-------------HHHHHHHHHHhCCCCEEEEecC
Q psy8530 1 MVHTWMGDQV--DMLEDHLGIIR-------------RDELVFMKARERRVPIVMLTSG 43 (68)
Q Consensus 1 ~vD~~~~D~L--~L~lS~~Gi~~-------------RD~~V~~~a~~~~IPva~v~gG 43 (68)
|-|+|+=..| ++++|....++ .=..+|+.|.+.++||.+.+|.
T Consensus 192 m~D~hqF~~ll~~~~vsR~qa~r~~~~~~a~~v~~~al~~lL~~aa~~~~pIm~fVgN 249 (345)
T 2j0p_A 192 MTDVHEFFQLLKRNNLTRQQAFRAVGNDLAYQVDNSSLTQLLNIAQQEQNEIMIFVGN 249 (345)
T ss_dssp CSSGGGHHHHHHHTTCCHHHHHHHSCTTTEEEECTTHHHHHHHHHHHHCCCEEEEEEC
T ss_pred CcCHHHHHHHHHHcCCCHHHHHHhCCHhHeeecCHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 5688887777 88888766554 2367899999999999988864
No 228
>2g5g_X Putative lipoprotein; cofacial heme, tyrosine ligand, dimer, transport protein; HET: HEM; 1.90A {Campylobacter jejuni subsp} SCOP: c.150.1.1
Probab=26.43 E-value=40 Score=23.48 Aligned_cols=15 Identities=7% Similarity=-0.164 Sum_probs=13.4
Q ss_pred HHHHHHhCCCCEEEE
Q psy8530 26 VFMKARERRVPIVML 40 (68)
Q Consensus 26 V~~~a~~~~IPva~v 40 (68)
+|++|+++++|+.+.
T Consensus 126 lv~~A~~~~ipviA~ 140 (268)
T 2g5g_X 126 FVNVVFYSKSKILGA 140 (268)
T ss_dssp HHHHHHTSSCCEEEE
T ss_pred HHHHHHHCCCCEEEe
Confidence 899999999998764
No 229
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=26.39 E-value=44 Score=22.31 Aligned_cols=19 Identities=16% Similarity=0.316 Sum_probs=14.6
Q ss_pred HHHHHHhCCCCEEEEecCC
Q psy8530 26 VFMKARERRVPIVMLTSGG 44 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gGG 44 (68)
.+..+++.|+.++.|.|||
T Consensus 38 ~I~~l~~~G~~vvlV~gGG 56 (240)
T 4a7w_A 38 EIKSLVENDIEVGIVIGGG 56 (240)
T ss_dssp HHHHHHHTTCEEEEEECCT
T ss_pred HHHHHHHCCCcEEEEECCc
Confidence 3445567899999999994
No 230
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=26.32 E-value=33 Score=20.54 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=16.5
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
..+|...+..|.+||+|.|
T Consensus 42 ~~Tvt~~l~rLe~kGlv~r 60 (138)
T 2g9w_A 42 YTTVMAVLQRLAKKNLVLQ 60 (138)
T ss_dssp HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHCCCEEE
Confidence 4589999999999999875
No 231
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=26.29 E-value=15 Score=24.91 Aligned_cols=19 Identities=26% Similarity=0.280 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhCCCCEEEE
Q psy8530 22 RDELVFMKARERRVPIVML 40 (68)
Q Consensus 22 RD~~V~~~a~~~~IPva~v 40 (68)
+|..+++.|+++|||+...
T Consensus 48 ~~a~~~~~A~~~gIp~~~~ 66 (215)
T 3da8_A 48 RECRAAEIAAEASVPVFTV 66 (215)
T ss_dssp SCCHHHHHHHHTTCCEEEC
T ss_pred CchHHHHHHHHcCCCEEEe
Confidence 3456789999999999887
No 232
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=26.25 E-value=35 Score=20.73 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=13.9
Q ss_pred HHHHHHHHHhCCCCEEE
Q psy8530 23 DELVFMKARERRVPIVM 39 (68)
Q Consensus 23 D~~V~~~a~~~~IPva~ 39 (68)
=+.+.+.|+++||||.-
T Consensus 29 A~~I~e~A~e~gVPi~e 45 (98)
T 3c01_E 29 ALAVRAYAEKVGVPVIV 45 (98)
T ss_dssp HHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHcCCCeec
Confidence 35678899999999973
No 233
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=26.21 E-value=48 Score=22.19 Aligned_cols=20 Identities=15% Similarity=0.421 Sum_probs=15.4
Q ss_pred HHHHHHhCCCCEEEEecCCC
Q psy8530 26 VFMKARERRVPIVMLTSGGY 45 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gGGY 45 (68)
.+..+++.|..++.|.|||-
T Consensus 40 ~i~~l~~~G~~vviV~gGG~ 59 (243)
T 3ek6_A 40 EVIEAQQAGAQVALVIGGGN 59 (243)
T ss_dssp HHHHHHHTTCEEEEEECSTT
T ss_pred HHHHHHHCCCeEEEEECCCH
Confidence 44556678999999999864
No 234
>4ac1_X Endo-N-acetyl-beta-D-glucosaminidase; hydrolase, glycoside hydrolase family 18, deglycosylation; HET: NAG; 1.30A {Hypocrea jecorina}
Probab=26.16 E-value=1.2e+02 Score=20.64 Aligned_cols=18 Identities=11% Similarity=0.313 Sum_probs=15.7
Q ss_pred HHHHHhCCCCEEEEecCC
Q psy8530 27 FMKARERRVPIVMLTSGG 44 (68)
Q Consensus 27 ~~~a~~~~IPva~v~gGG 44 (68)
+..|+++|+-|...+||.
T Consensus 68 i~~~q~~g~KvllsiGG~ 85 (283)
T 4ac1_X 68 TITMKQAGVKVMGMVGGA 85 (283)
T ss_dssp HHHHHHTTCEEEEEEETT
T ss_pred HHHHHcCCCEEEEEEcCC
Confidence 578999999999999884
No 235
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.11 E-value=25 Score=23.93 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEe
Q psy8530 21 RRDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~ 41 (68)
..|...+..|...|||++++.
T Consensus 121 ~~d~~ai~EA~~l~IP~Ial~ 141 (202)
T 3j20_B 121 RADHQAMREAVEIGIPIVALV 141 (202)
T ss_dssp TTSHHHHHHHHHHTCCEEEEE
T ss_pred ccchHHHHHHHHcCCCEEEEE
Confidence 457788999999999999876
No 236
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=26.01 E-value=39 Score=19.21 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=14.6
Q ss_pred HHHHHHHHHhHHHcCCcC
Q psy8530 50 ARIIADSILNLADLGLIS 67 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~ 67 (68)
.+.|-.+...|.+||+|+
T Consensus 39 kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 39 KQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHCCCee
Confidence 346778899999999985
No 237
>1ur3_M Hypothetical oxidoreductase YDHF; NADP binding, aldo-keto reductase; 2.57A {Escherichia coli} SCOP: c.1.7.1 PDB: 1og6_A*
Probab=25.98 E-value=67 Score=22.14 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=16.7
Q ss_pred HHHHHHhCCCCEEE--EecCCC
Q psy8530 26 VFMKARERRVPIVM--LTSGGY 45 (68)
Q Consensus 26 V~~~a~~~~IPva~--v~gGGY 45 (68)
++++|+++||++.+ .+++|.
T Consensus 216 ll~~~~~~gi~v~a~spL~~G~ 237 (319)
T 1ur3_M 216 TLDQLQQLRVRPMAWSCLGGGR 237 (319)
T ss_dssp HHHHHHHHTCCCEEECCCTTTC
T ss_pred HHHHHHHcCCeEEEeccccCcc
Confidence 89999999999885 457775
No 238
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=25.95 E-value=40 Score=22.20 Aligned_cols=38 Identities=18% Similarity=0.120 Sum_probs=26.3
Q ss_pred HHHHHHHhCCCCEEEEec---C-C---C--ccchHHHHHHHHHhHHH
Q psy8530 25 LVFMKARERRVPIVMLTS---G-G---Y--LKQTARIIADSILNLAD 62 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~g---G-G---Y--~~d~~~~v~~si~~l~~ 62 (68)
-+++.+++.+||++++-. + + | ..|.........++|.+
T Consensus 76 ~~~~~a~~~gipvV~~d~~~~~~~~~~~v~~~D~~~~g~~~~~~L~~ 122 (316)
T 1tjy_A 76 PALKRAMQRGVKILTWDSDTKPECRSYYINQGTPKQLGSMLVEMAAH 122 (316)
T ss_dssp HHHHHHHHTTCEEEEESSCCCGGGCSEEEESCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCEEEEecCCCCCCCceEEEecCCHHHHHHHHHHHHHH
Confidence 357888999999998732 1 1 1 34666667777788877
No 239
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=25.87 E-value=55 Score=20.02 Aligned_cols=24 Identities=17% Similarity=-0.026 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCC
Q psy8530 21 RRDELVFMKARERRVPIVMLTSGG 44 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~gGG 44 (68)
..=...++.|+++|+|++++.+-.
T Consensus 93 ~~~~~~~~~ak~~g~~vi~IT~~~ 116 (186)
T 1m3s_A 93 KSLIHTAAKAKSLHGIVAALTINP 116 (186)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCT
T ss_pred HHHHHHHHHHHHCCCEEEEEECCC
Confidence 333457889999999999988754
No 240
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=25.80 E-value=40 Score=19.72 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=15.9
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
...+.+.+..|.++|+|.|
T Consensus 68 ~~tvs~~l~~Le~~Glv~r 86 (150)
T 3fm5_A 68 PSQIVGLVDELEERGLVVR 86 (150)
T ss_dssp HHHHHHHHHHHHTTTSEEC
T ss_pred HhHHHHHHHHHHHCCCEEe
Confidence 3478889999999999875
No 241
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=25.79 E-value=52 Score=20.03 Aligned_cols=20 Identities=20% Similarity=0.137 Sum_probs=16.6
Q ss_pred HHHHHHHHhCCCCEEEEecC
Q psy8530 24 ELVFMKARERRVPIVMLTSG 43 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v~gG 43 (68)
...++.|+++|+|++++.+-
T Consensus 99 ~~~~~~ak~~g~~vi~IT~~ 118 (180)
T 1jeo_A 99 LTVAKKAKNINNNIIAIVCE 118 (180)
T ss_dssp HHHHHHHHTTCSCEEEEESS
T ss_pred HHHHHHHHHCCCcEEEEeCC
Confidence 44678999999999998864
No 242
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=25.70 E-value=48 Score=21.01 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=26.3
Q ss_pred HHHHHHHHhCCCCEEEEec---CCC---ccchHHHHHHHHHhHHH
Q psy8530 24 ELVFMKARERRVPIVMLTS---GGY---LKQTARIIADSILNLAD 62 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v~g---GGY---~~d~~~~v~~si~~l~~ 62 (68)
.-.++.+.+.+||++++-. +++ ..|.........++|.+
T Consensus 76 ~~~~~~~~~~~iPvV~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~ 120 (291)
T 3l49_A 76 NPWLQKINDAGIPLFTVDTATPHAINNTTSNNYSIGAELALQMVA 120 (291)
T ss_dssp HHHHHHHHHTTCCEEEESCCCTTCSEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEecCCCCCcCceEecChHHHHHHHHHHHHH
Confidence 3457888999999987642 111 23456667777888887
No 243
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=25.62 E-value=1.4e+02 Score=19.15 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecC
Q psy8530 19 IIRRDELVFMKARERRVPIVMLTSG 43 (68)
Q Consensus 19 i~~RD~~V~~~a~~~~IPva~v~gG 43 (68)
..++=+..++.|++.|.|.+.+..|
T Consensus 91 ~~~~~~~~i~~A~~lGa~~v~~~~g 115 (269)
T 3ngf_A 91 FRDNVDIALHYALALDCRTLHAMSG 115 (269)
T ss_dssp HHHHHHHHHHHHHHTTCCEEECCBC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccC
Confidence 3344566899999999999988777
No 244
>3n12_A Chitinase A, chinctu2; zinc atoms, complex, hydrolase; 1.20A {Bacillus cereus} PDB: 3n11_A 3n15_A* 3n13_A* 3n17_A* 3n18_A* 3n1a_A*
Probab=25.44 E-value=1.1e+02 Score=21.36 Aligned_cols=39 Identities=15% Similarity=0.090 Sum_probs=26.7
Q ss_pred HHHHHHhCCCCEEEEecCCCc------cchHHHHHHHHHhHHHcC
Q psy8530 26 VFMKARERRVPIVMLTSGGYL------KQTARIIADSILNLADLG 64 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gGGY~------~d~~~~v~~si~~l~~~~ 64 (68)
-+..|+++++.|...+||.-. .+..+....|+.++.++.
T Consensus 64 ~i~~~k~~g~kvllsiGG~~~s~~~~~~~~r~~fi~si~~~~~~~ 108 (333)
T 3n12_A 64 DISYLKSKGKKVVLSIGGQNGVVLLPDNAAKDRFINSIQSLIDKY 108 (333)
T ss_dssp HHHHHHHTTCEEEEEEESTTCCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCeEEEEecCCCCccccCCHHHHHHHHHHHHHHHHHc
Confidence 467789999999988877531 123445567777777764
No 245
>1uvq_C Orexin; immunology, MHC class II, diabetes, narcolepsy, autoimmune disease, structural proteomics in europe, spine, structural genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens}
Probab=25.40 E-value=30 Score=17.40 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=10.5
Q ss_pred CCCCEEEEecCCC
Q psy8530 33 RRVPIVMLTSGGY 45 (68)
Q Consensus 33 ~~IPva~v~gGGY 45 (68)
-.+|-|+|.|||-
T Consensus 11 TKVsWAaVtgggs 23 (33)
T 1uvq_C 11 TKVSWAAVGGGGS 23 (33)
T ss_pred cccceEEecCCce
Confidence 4688899999884
No 246
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=25.31 E-value=32 Score=20.46 Aligned_cols=49 Identities=14% Similarity=0.083 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhCCCC-EE-EEecCCCccchHHHHHHHHHhHHHcCCcCC
Q psy8530 19 IIRRDELVFMKARERRVP-IV-MLTSGGYLKQTARIIADSILNLADLGLISR 68 (68)
Q Consensus 19 i~~RD~~V~~~a~~~~IP-va-~v~gGGY~~d~~~~v~~si~~l~~~~~~~~ 68 (68)
+-.-+..|+....+.+=| +- .-++=--. =...+|.+.+..|.++|+|.|
T Consensus 24 Lt~~e~~il~~L~~~~~~~~t~~eLa~~l~-~s~sTV~r~L~~L~~~GlV~r 74 (123)
T 3r0a_A 24 LTKADLNVMKSFLNEPDRWIDTDALSKSLK-LDVSTVQRSVKKLHEKEILQR 74 (123)
T ss_dssp CCHHHHHHHHHHHHSTTCCEEHHHHHHHHT-SCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHC-cCHHHHHHHHHHHHHCCCEEe
Confidence 334577788887776655 21 11110000 134589999999999999864
No 247
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Probab=25.29 E-value=62 Score=25.26 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhCCCCEEEEe-cCCC
Q psy8530 21 RRDELVFMKARERRVPIVMLT-SGGY 45 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~-gGGY 45 (68)
++=..+++.|.+.++|++++. +||-
T Consensus 128 ~Ki~Ra~e~A~~~~lPvI~l~dSgGA 153 (588)
T 3gf3_A 128 ENLIRCSDAAKMMHLPLIYLLNCSGV 153 (588)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCB
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCc
Confidence 555678899999999999888 5553
No 248
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=25.26 E-value=37 Score=18.81 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=15.8
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
..++.+.+..|.++|++.|
T Consensus 40 ~~tvs~~l~~Le~~gli~r 58 (99)
T 1tbx_A 40 TATFYDAKKFLIQEGFVKE 58 (99)
T ss_dssp HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHCCCEEE
Confidence 4578889999999999864
No 249
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=25.02 E-value=63 Score=19.67 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCCEEEEecCCC
Q psy8530 25 LVFMKARERRVPIVMLTSGGY 45 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gGGY 45 (68)
-+++.++++|+|++.+.++..
T Consensus 41 ~~L~~L~~~g~~~~i~Tn~~~ 61 (189)
T 3ib6_A 41 ETLEKVKQLGFKQAILSNTAT 61 (189)
T ss_dssp HHHHHHHHTTCEEEEEECCSS
T ss_pred HHHHHHHHCCCEEEEEECCCc
Confidence 468899999999998887654
No 250
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=24.94 E-value=1.5e+02 Score=19.57 Aligned_cols=28 Identities=4% Similarity=-0.168 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecCC
Q psy8530 17 LGIIRRDELVFMKARERRVPIVMLTSGG 44 (68)
Q Consensus 17 ~Gi~~RD~~V~~~a~~~~IPva~v~gGG 44 (68)
+-..+.=+..++.|++.|+|.+.+.++.
T Consensus 104 ~~~~~~~~~~i~~A~~lG~~~v~~~~~~ 131 (303)
T 3l23_A 104 PKIMEYWKATAADHAKLGCKYLIQPMMP 131 (303)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEECSCC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 4445556778999999999999886543
No 251
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=24.90 E-value=88 Score=22.89 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=20.5
Q ss_pred HHHHHHHHhCCCCEEEEecCCCcc
Q psy8530 24 ELVFMKARERRVPIVMLTSGGYLK 47 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v~gGGY~~ 47 (68)
.-+++.|.+.|++.++++..|+..
T Consensus 78 ~~~v~e~~~~Gi~~vv~~s~G~~e 101 (457)
T 2csu_A 78 KDTLIQCGEKGVKGVVIITAGFGE 101 (457)
T ss_dssp HHHHHHHHHHTCCEEEECCCSSTT
T ss_pred HHHHHHHHHcCCCEEEEecCCCCc
Confidence 446788889999999999999964
No 252
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=24.88 E-value=39 Score=24.26 Aligned_cols=21 Identities=5% Similarity=0.063 Sum_probs=17.5
Q ss_pred HHHHHHHHhCCCCEEEEecCC
Q psy8530 24 ELVFMKARERRVPIVMLTSGG 44 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v~gGG 44 (68)
+-++++++++|++|..|-||+
T Consensus 227 ~eLi~~L~~~G~~v~IVSgg~ 247 (385)
T 4gxt_A 227 VDLYRSLEENGIDCYIVSASF 247 (385)
T ss_dssp HHHHHHHHHTTCEEEEEEEEE
T ss_pred HHHHHHHHHCCCeEEEEcCCc
Confidence 457999999999998887764
No 253
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=24.85 E-value=1e+02 Score=19.93 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=15.8
Q ss_pred EEEecCCCccchHH---HHHHHHHhHHHcC
Q psy8530 38 VMLTSGGYLKQTAR---IIADSILNLADLG 64 (68)
Q Consensus 38 a~v~gGGY~~d~~~---~v~~si~~l~~~~ 64 (68)
+.+++||++.+.+- ....-+..+.+.|
T Consensus 5 i~il~gg~s~e~~~s~~~~~~l~~al~~~G 34 (306)
T 1iow_A 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGG 34 (306)
T ss_dssp EEEECCCSSTTHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeCCCCccceEcHHhHHHHHHHHHHCC
Confidence 67889999876554 2233444454444
No 254
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=24.83 E-value=30 Score=24.35 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=31.9
Q ss_pred CCCCCcc--cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCc
Q psy8530 4 TWMGDQV--DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYL 46 (68)
Q Consensus 4 ~~~~D~L--~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~ 46 (68)
++.+.+| .|.+|...+.+. ++..++.|+++..+-|-||.
T Consensus 19 ~~Sg~eLa~~lgvSr~aV~k~----i~~L~~~G~~i~~~~~~GY~ 59 (323)
T 3rkx_A 19 YISGQSIAESLNISRTAVKKV----IDQLKLEGCKIDSVNHKGHL 59 (323)
T ss_dssp CBCHHHHHHHHTSCHHHHHHH----HHHHHHTTCEEEEETTTEEE
T ss_pred ccCHHHHHHHHCCCHHHHHHH----HHHHHhcCCeEEEeCCCeEE
Confidence 5667778 899999998765 44556799999999999996
No 255
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*
Probab=24.78 E-value=96 Score=23.61 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCCCEEEEe-cCCCc
Q psy8530 13 LEDHLGIIRRDELVFMKARERRVPIVMLT-SGGYL 46 (68)
Q Consensus 13 ~lS~~Gi~~RD~~V~~~a~~~~IPva~v~-gGGY~ 46 (68)
.++.+|-.+=-++| ++|.+.++|++++. -=||.
T Consensus 341 ~~~~~~a~Kaar~i-~~~~~~~iPlv~lvDtpGf~ 374 (523)
T 1on3_A 341 CLDINASDKAAEFV-NFCDSFNIPLVQLVDVPGFL 374 (523)
T ss_dssp CBCHHHHHHHHHHH-HHHHHTTCCEEEEEEECCBC
T ss_pred CCCHHHHHHHHHHH-HHHHhcCCCeEEEEeCCCcC
Confidence 36677777777777 89999999999988 34443
No 256
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=24.71 E-value=56 Score=19.81 Aligned_cols=17 Identities=12% Similarity=0.370 Sum_probs=13.4
Q ss_pred HHHHHHHhCCCCEEEEe
Q psy8530 25 LVFMKARERRVPIVMLT 41 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~ 41 (68)
.+-..|.+++||+..+-
T Consensus 54 ~l~~lc~~~~VP~~~v~ 70 (121)
T 2lbw_A 54 HIPVLCEDHSVPYIFIP 70 (121)
T ss_dssp HHHHHHHHTCCCEEECC
T ss_pred HHHHHHHhcCCcEEEEC
Confidence 45688999999987763
No 257
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=24.71 E-value=97 Score=20.64 Aligned_cols=14 Identities=21% Similarity=0.188 Sum_probs=11.0
Q ss_pred EEEEecCCCccchH
Q psy8530 37 IVMLTSGGYLKQTA 50 (68)
Q Consensus 37 va~v~gGGY~~d~~ 50 (68)
-++|+.||++.+.+
T Consensus 15 ~v~vl~gg~s~E~~ 28 (317)
T 4eg0_A 15 KVAVLFGGESAERE 28 (317)
T ss_dssp EEEEECCCSSTTHH
T ss_pred eEEEEECCCCCcce
Confidence 46788889998775
No 258
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=24.68 E-value=1.9e+02 Score=20.63 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=34.7
Q ss_pred cccCCHHHHHHHHHHHHHHHHhCC--CCEEEEecCCCccchHHHHH
Q psy8530 11 DMLEDHLGIIRRDELVFMKARERR--VPIVMLTSGGYLKQTARIIA 54 (68)
Q Consensus 11 ~L~lS~~Gi~~RD~~V~~~a~~~~--IPva~v~gGGY~~d~~~~v~ 54 (68)
.++.|.+.+.++=+-+.+.|+++| +.+.+.+.-+|..+.+.+++
T Consensus 104 ~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~ed~~~~~~~~~~~ 149 (382)
T 2ztj_A 104 PHGRDIPRIIEEAKEVIAYIREAAPHVEVRFSAEDTFRSEEQDLLA 149 (382)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEETTTTTSCHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEeCCCCCHHHHHH
Confidence 466788999999999999999999 99888887777777665444
No 259
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=24.57 E-value=73 Score=22.84 Aligned_cols=24 Identities=4% Similarity=0.093 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCCEEEEecCCCccc
Q psy8530 25 LVFMKARERRVPIVMLTSGGYLKQ 48 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gGGY~~d 48 (68)
.+++.|.+++||.++++..|++..
T Consensus 95 ai~ea~~~~Gv~~vViiT~G~~e~ 118 (334)
T 3mwd_B 95 STMETMNYAQIRTIAIIAEGIPEA 118 (334)
T ss_dssp HHHHHTTSTTCCEEEECCSCCCHH
T ss_pred HHHHHHHHCCCCEEEEECCCCCHH
Confidence 456777779999999999999863
No 260
>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ...
Probab=24.35 E-value=1.8e+02 Score=20.13 Aligned_cols=23 Identities=17% Similarity=-0.016 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhCCCCEEEEecC
Q psy8530 21 RRDELVFMKARERRVPIVMLTSG 43 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~gG 43 (68)
++=+..++.|++.|.|.+.+.+|
T Consensus 116 ~~~~~~i~~A~~LGa~~vvv~~g 138 (386)
T 1muw_A 116 RKTIRNIDLAVELGAKTYVAWGG 138 (386)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCT
T ss_pred HHHHHHHHHHHHhCCCEEEECCC
Confidence 44567889999999999887766
No 261
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=24.33 E-value=76 Score=20.03 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCC
Q psy8530 21 RRDELVFMKARERRVPIVMLTSGGY 45 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~gGGY 45 (68)
.+-.-.++.++++|+|++.+.|..+
T Consensus 27 ~~~~~ai~~l~~~Gi~v~l~Tgr~~ 51 (268)
T 3qgm_A 27 PEGVEGVKKLKELGKKIIFVSNNST 51 (268)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred cCHHHHHHHHHHcCCeEEEEeCcCC
Confidence 3456689999999999999988544
No 262
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=24.32 E-value=1.2e+02 Score=20.96 Aligned_cols=22 Identities=14% Similarity=0.033 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCCCEEEEec
Q psy8530 21 RRDELVFMKARERRVPIVMLTS 42 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~g 42 (68)
+.=+-|+++|.+.||+.+++.+
T Consensus 51 ~~l~~iv~~c~~~GI~~lTlYa 72 (249)
T 1f75_A 51 QTVRKITRYASDLGVKYLTLYA 72 (249)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEE
Confidence 4456789999999999999976
No 263
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=24.29 E-value=39 Score=19.30 Aligned_cols=19 Identities=11% Similarity=0.038 Sum_probs=15.6
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
...+...+..|.++|+|.|
T Consensus 64 ~~tvs~~l~~Le~~Gli~r 82 (141)
T 3bro_A 64 SSTATVLLQRMEIKKLLYR 82 (141)
T ss_dssp HHHHHHHHHHHHHTTSEEE
T ss_pred cchHHHHHHHHHHCCCEEe
Confidence 3478889999999999864
No 264
>1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A
Probab=24.12 E-value=1.3e+02 Score=18.30 Aligned_cols=22 Identities=9% Similarity=-0.043 Sum_probs=17.8
Q ss_pred HHHHHHHhC-CCCEEEEecCCCc
Q psy8530 25 LVFMKARER-RVPIVMLTSGGYL 46 (68)
Q Consensus 25 ~V~~~a~~~-~IPva~v~gGGY~ 46 (68)
-+++.++++ |+|++.+.++.-.
T Consensus 82 e~L~~L~~~~g~~~~ivT~~~~~ 104 (197)
T 1q92_A 82 EAVKEMASLQNTDVFICTSPIKM 104 (197)
T ss_dssp HHHHHHHHSTTEEEEEEECCCSC
T ss_pred HHHHHHHhcCCCeEEEEeCCccc
Confidence 378889999 9999988877553
No 265
>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19
Probab=24.09 E-value=1.1e+02 Score=18.86 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=16.8
Q ss_pred HHHHHHHhCCCCEEEEecCC
Q psy8530 25 LVFMKARERRVPIVMLTSGG 44 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gGG 44 (68)
-.++.++++|++++.+.++.
T Consensus 63 e~L~~L~~~G~~~~i~Tn~~ 82 (218)
T 2o2x_A 63 PAIATANRAGIPVVVVTNQS 82 (218)
T ss_dssp HHHHHHHHHTCCEEEEEECH
T ss_pred HHHHHHHHCCCEEEEEcCcC
Confidence 36888999999999988764
No 266
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20
Probab=24.04 E-value=48 Score=20.77 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=15.8
Q ss_pred HHHHHHHhCCCCEEEEecC
Q psy8530 25 LVFMKARERRVPIVMLTSG 43 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gG 43 (68)
-+++.++++|+|++.+.++
T Consensus 84 ~~l~~L~~~g~~~~ivS~~ 102 (236)
T 2fea_A 84 EFVAFINEHEIPFYVISGG 102 (236)
T ss_dssp HHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHhCCCeEEEEeCC
Confidence 3678889999999988876
No 267
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=24.01 E-value=27 Score=26.35 Aligned_cols=27 Identities=11% Similarity=-0.028 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhCCCCEEEEe-cCCCcc
Q psy8530 21 RRDELVFMKARERRVPIVMLT-SGGYLK 47 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~-gGGY~~ 47 (68)
+|=..|.+.|+++++|+=.=. +|--.+
T Consensus 124 e~~~~vv~~ak~~~~pIRIGVN~GSL~~ 151 (406)
T 4g9p_A 124 EHFAEMIRIAMDLGKPVRIGANWGSLDP 151 (406)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEGGGCCH
T ss_pred HHHHHHHHHHHHccCCceeccccccccH
Confidence 344579999999999997544 554443
No 268
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=24.01 E-value=39 Score=19.36 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=12.6
Q ss_pred HHHHHHHHhCCCCEE
Q psy8530 24 ELVFMKARERRVPIV 38 (68)
Q Consensus 24 ~~V~~~a~~~~IPva 38 (68)
|....+|+++++|+-
T Consensus 26 RItvaWcKr~~VPie 40 (62)
T 2b9s_B 26 RIICSWAKAQDVPIN 40 (62)
T ss_dssp HHHHHHHHHTTCCGG
T ss_pred hhhhhhhhhcCCCHH
Confidence 567789999999984
No 269
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=23.95 E-value=2.1e+02 Score=20.71 Aligned_cols=53 Identities=17% Similarity=0.323 Sum_probs=41.0
Q ss_pred cCCHHHHHHHHHHHHHHHHh-CCC--CEEEEec-------CC-CccchHHHHHHHHHhHHHcCC
Q psy8530 13 LEDHLGIIRRDELVFMKARE-RRV--PIVMLTS-------GG-YLKQTARIIADSILNLADLGL 65 (68)
Q Consensus 13 ~lS~~Gi~~RD~~V~~~a~~-~~I--Pva~v~g-------GG-Y~~d~~~~v~~si~~l~~~~~ 65 (68)
.||.+.|.+.=+...+.+++ .|| |-.+|.| || .+++..++|.-.|+.+.++|.
T Consensus 174 ~it~e~i~~~i~~~~~~L~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~Pai~~~r~~Gi 237 (328)
T 1yxo_A 174 AISDERLTRVARILHADLRDKFGIAHPRILVCGLNPHAGEGGHLGREEIEVIEPCLERLRGEGL 237 (328)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGTTTTTCSHHHHTHHHHHHHHHTTTC
T ss_pred hcCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCCCCCCCHhHHHHHHHHHHHHHHCCC
Confidence 37889998888888887776 676 7666764 34 467777899999999998864
No 270
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*
Probab=23.84 E-value=1.7e+02 Score=19.68 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=16.8
Q ss_pred HHHHHHHhCCCCEEEEecCCC
Q psy8530 25 LVFMKARERRVPIVMLTSGGY 45 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gGGY 45 (68)
-+++.++++|+|++.+.+|.+
T Consensus 107 ~~L~~L~~~g~~~~i~Tn~~~ 127 (555)
T 3i28_A 107 QAALMLRKKGFTTAILTNTWL 127 (555)
T ss_dssp HHHHHHHHTTCEEEEEECCCC
T ss_pred HHHHHHHHCCCEEEEEeCCCc
Confidence 357788999999999988743
No 271
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=23.77 E-value=35 Score=21.07 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=13.9
Q ss_pred HHHHHHHhCCCCEEEEe
Q psy8530 25 LVFMKARERRVPIVMLT 41 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~ 41 (68)
++-..|.+++||+..+-
T Consensus 59 ~l~~lC~~~~VP~~~v~ 75 (113)
T 3jyw_G 59 FLPALCKKMGVPYAIVK 75 (113)
T ss_dssp THHHHHHHTTCCCEECS
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 45688999999998764
No 272
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=23.67 E-value=45 Score=21.59 Aligned_cols=40 Identities=8% Similarity=0.033 Sum_probs=27.2
Q ss_pred HHHHHHHhCCCCEEEEec----CCC----ccchHHHHHHHHHhHH-HcC
Q psy8530 25 LVFMKARERRVPIVMLTS----GGY----LKQTARIIADSILNLA-DLG 64 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~g----GGY----~~d~~~~v~~si~~l~-~~~ 64 (68)
-.++.+++.+||++++-. .++ ..|.........++|. ++|
T Consensus 74 ~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G 122 (313)
T 3m9w_A 74 NVVKEAKQEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVP 122 (313)
T ss_dssp HHHHHHHTTTCEEEEESSCCTTSCCSEEEEECHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHCCCeEEEECCcCCCCCceEEEecCHHHHHHHHHHHHHHhCC
Confidence 357788899999988743 222 1356667777888888 443
No 273
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=23.64 E-value=47 Score=19.11 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCccchHHHHHHHHHhHHHcCCcCC
Q psy8530 21 RRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLISR 68 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~gGGY~~d~~~~v~~si~~l~~~~~~~~ 68 (68)
..+..|+......+++ ..-++--.+ =....+...+..|.++|+|.|
T Consensus 38 ~~~~~iL~~l~~~~~t-~~eLa~~l~-~s~~tvs~~l~~L~~~Glv~r 83 (146)
T 3tgn_A 38 NTQEHILMLLSEESLT-NSELARRLN-VSQAAVTKAIKSLVKEGMLET 83 (146)
T ss_dssp HHHHHHHHHHTTCCCC-HHHHHHHHT-CCHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHC-CCHHHHHHHHHHHHHCCCeEe
Confidence 3455677776665411 111111111 123478889999999999865
No 274
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=23.29 E-value=41 Score=19.54 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=15.7
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
...+...+..|.++|+|.|
T Consensus 64 ~~tvs~~l~~L~~~Glv~r 82 (140)
T 3hsr_A 64 SGTLTPLLKKLEKKDYVVR 82 (140)
T ss_dssp HHHHHHHHHHHHHTTSEEE
T ss_pred hhhHHHHHHHHHHCCCeEe
Confidence 4478889999999999864
No 275
>3fde_A E3 ubiquitin-protein ligase UHRF1; SRA domain, base flipping, DNA CPG methylation, cell cycle, developmental protein, DNA damage; HET: 5CM; 1.41A {Mus musculus} SCOP: b.122.1.12 PDB: 2zo0_B* 2zo2_B* 3f8i_A* 2zo1_B* 3f8j_B* 2zkd_A* 2zke_A* 2zkf_A* 2zkg_A 3dwh_A 3bi7_A 3clz_A*
Probab=23.24 E-value=38 Score=23.42 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=9.9
Q ss_pred CEEEEecCCCccc
Q psy8530 36 PIVMLTSGGYLKQ 48 (68)
Q Consensus 36 Pva~v~gGGY~~d 48 (68)
-+..|++|||..|
T Consensus 46 A~SIVlSGGY~DD 58 (212)
T 3fde_A 46 AYSLVLAGGYEDD 58 (212)
T ss_dssp EEEEEECSCSTTC
T ss_pred eEEEEeCCCcccC
Confidence 3567889999865
No 276
>4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A
Probab=23.24 E-value=62 Score=18.81 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=16.2
Q ss_pred HHHHHHHhCCCCEEEEecCC
Q psy8530 25 LVFMKARERRVPIVMLTSGG 44 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gGG 44 (68)
-+++.++++|+|++.+.++-
T Consensus 86 ~~l~~l~~~g~~~~i~t~~~ 105 (201)
T 4ap9_A 86 ELVETLREKGFKVVLISGSF 105 (201)
T ss_dssp HHHHHHHHTTCEEEEEEEEE
T ss_pred HHHHHHHHCCCeEEEEeCCc
Confidence 46889999999998877653
No 277
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A
Probab=23.20 E-value=43 Score=22.49 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=14.1
Q ss_pred HHHHHhCCCCEEEEecCC
Q psy8530 27 FMKARERRVPIVMLTSGG 44 (68)
Q Consensus 27 ~~~a~~~~IPva~v~gGG 44 (68)
.+.|++.+||++-...||
T Consensus 80 ~~~l~~~gi~vvrr~rGG 97 (237)
T 2qhs_A 80 ESWYRENGFELYWVERGG 97 (237)
T ss_dssp HHHHHHTTCEEEECCSSS
T ss_pred HHHHHhcCCeEEEEcCCC
Confidence 467889999999777444
No 278
>3h35_A Uncharacterized protein ABO_0056; ubiquitous hydrocarbon degrading BA structural genomics, PSI-2, protein structure initiative; HET: MSE SRT; 2.15A {Alcanivorax borkumensis}
Probab=23.07 E-value=93 Score=20.66 Aligned_cols=45 Identities=16% Similarity=0.123 Sum_probs=29.1
Q ss_pred HHHHHHHHHhC-CCCEEEEec----CCCcc-----c--------hHHHHHHHHHhHHHcCCcC
Q psy8530 23 DELVFMKARER-RVPIVMLTS----GGYLK-----Q--------TARIIADSILNLADLGLIS 67 (68)
Q Consensus 23 D~~V~~~a~~~-~IPva~v~g----GGY~~-----d--------~~~~v~~si~~l~~~~~~~ 67 (68)
|..+|+...+. .+|++-+.. ||+.. . ..+.++.++.||...||+.
T Consensus 58 eA~iL~~l~~~~~~P~v~v~~~~~~~g~~~v~~~S~ig~~ag~~~pd~v~~Yl~NL~RLGLi~ 120 (185)
T 3h35_A 58 EARLLAALSDGSAFALLTLYSGSRFSRGEVLYRYSNAGRAAGIQCNDFIALYLNHLFAQGLVI 120 (185)
T ss_dssp HHHHHHHHTTSCCEEEEEEESSCTTSCCCEEEEECSHHHHHTCSCGGGHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhcCCCccEEEEEeccCCCCceeeeecccchhhcCCcChhhhHHHHHHHHHCCCee
Confidence 45567766544 589998753 33211 1 1236789999999999873
No 279
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=22.89 E-value=95 Score=20.68 Aligned_cols=39 Identities=26% Similarity=0.347 Sum_probs=26.9
Q ss_pred HHHHHHhCCCCEEEEec----CCC---ccchHHHHHHHHHhHHHcC
Q psy8530 26 VFMKARERRVPIVMLTS----GGY---LKQTARIIADSILNLADLG 64 (68)
Q Consensus 26 V~~~a~~~~IPva~v~g----GGY---~~d~~~~v~~si~~l~~~~ 64 (68)
.++.+.+.+||++++=. .++ ..|.........++|.++|
T Consensus 143 ~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G 188 (366)
T 3h5t_A 143 HIDAIRARGLPAVIADQPAREEGMPFIAPNNRKAIAPAAQALIDAG 188 (366)
T ss_dssp HHHHHHHHTCCEEEESSCCSCTTCCEEEECHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHCCCCEEEECCccCCCCCCEEEeChHHHHHHHHHHHHHCC
Confidence 46777888999997632 111 2356677778888888875
No 280
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=22.82 E-value=46 Score=22.42 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCCCEEEEecCCC
Q psy8530 23 DELVFMKARERRVPIVMLTSGGY 45 (68)
Q Consensus 23 D~~V~~~a~~~~IPva~v~gGGY 45 (68)
|..|.+.|+++|||+..+---.|
T Consensus 41 ~a~v~~~A~~~gIp~~~~~~~~~ 63 (211)
T 3p9x_A 41 GAKVVERVKVHEIPVCALDPKTY 63 (211)
T ss_dssp SSHHHHHHHTTTCCEEECCGGGS
T ss_pred CcHHHHHHHHcCCCEEEeChhhc
Confidence 34789999999999987644344
No 281
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=22.80 E-value=1.9e+02 Score=19.87 Aligned_cols=42 Identities=7% Similarity=-0.008 Sum_probs=31.9
Q ss_pred cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCccchHHH
Q psy8530 11 DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARI 52 (68)
Q Consensus 11 ~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~d~~~~ 52 (68)
+++.|.+-..++=+-+.+.|++++..|.+.+--++..+.+.+
T Consensus 111 nl~~s~~e~l~~~~~~v~~a~~~g~~v~~~~~d~~~~~~~~~ 152 (293)
T 3ewb_X 111 KLKMSRAEVLASIKHHISYARQKFDVVQFSPEDATRSDRAFL 152 (293)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHTTCSCEEEEEETGGGSCHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccCCCCCHHHH
Confidence 578889999999999999999999998765543334455543
No 282
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=22.75 E-value=60 Score=20.37 Aligned_cols=39 Identities=13% Similarity=-0.023 Sum_probs=22.7
Q ss_pred HHHHHHhCCCCEEEEecC--CC---ccchHHHHHHHHHhHHHcC
Q psy8530 26 VFMKARERRVPIVMLTSG--GY---LKQTARIIADSILNLADLG 64 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gG--GY---~~d~~~~v~~si~~l~~~~ 64 (68)
.++.+++.+||++++-.. ++ ..|.........++|.++|
T Consensus 70 ~~~~~~~~~iPvV~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G 113 (276)
T 2h0a_A 70 FEEGRLPTERPVVLVDAQNPRYDSVYLDNRLGGRLAGAYLARFP 113 (276)
T ss_dssp ----CCSCSSCEEEESSCCTTSEEEEECSHHHHHHHHHHHTTSS
T ss_pred HHHHHhhcCCCEEEEeccCCCCCEEEEccHHHHHHHHHHHHHcC
Confidence 456777789999876321 01 1345666777778887765
No 283
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=22.71 E-value=47 Score=19.21 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=14.6
Q ss_pred HHHHHHHhHHHcCCcCC
Q psy8530 52 IIADSILNLADLGLISR 68 (68)
Q Consensus 52 ~v~~si~~l~~~~~~~~ 68 (68)
.+.+.+..|.++|+|.|
T Consensus 67 tvs~~l~~L~~~Glv~r 83 (142)
T 3ech_A 67 LITRKIRELEGRNLVRR 83 (142)
T ss_dssp HHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHHHCCCEee
Confidence 67788999999999875
No 284
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=22.67 E-value=53 Score=19.28 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=15.8
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
...+...+..|.++|+|.|
T Consensus 69 ~~~vs~~l~~L~~~Glv~r 87 (149)
T 4hbl_A 69 SNTLTPMLKRLEQSGWVKR 87 (149)
T ss_dssp HHHHHHHHHHHHHHTSEEC
T ss_pred HHHHHHHHHHHHHCCCEee
Confidence 3478889999999999875
No 285
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=22.62 E-value=51 Score=22.37 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=10.8
Q ss_pred EEEecCCCccchHH
Q psy8530 38 VMLTSGGYLKQTAR 51 (68)
Q Consensus 38 a~v~gGGY~~d~~~ 51 (68)
++|++||++.+.+-
T Consensus 6 v~vl~gG~s~E~~v 19 (343)
T 1e4e_A 6 VAILFGGCSEEHDV 19 (343)
T ss_dssp EEEEEECSSTTHHH
T ss_pred EEEEeCCCCCCcch
Confidence 67788999987763
No 286
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=22.53 E-value=41 Score=19.61 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=14.8
Q ss_pred HHHHHHHHhHHHcCCcCC
Q psy8530 51 RIIADSILNLADLGLISR 68 (68)
Q Consensus 51 ~~v~~si~~l~~~~~~~~ 68 (68)
..+...+..|.++|+|.|
T Consensus 72 ~~vs~~l~~L~~~Glv~r 89 (148)
T 3jw4_A 72 ASITSMLQGLEKKGYIER 89 (148)
T ss_dssp -CHHHHHHHHHHTTSBCC
T ss_pred hHHHHHHHHHHHCCCEEe
Confidence 367789999999999975
No 287
>3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully methylated CG, SUVH5, 5MC binding protein, fully methylated CG duplex DNA; HET: DNA 5CM; 2.20A {Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X*
Probab=22.51 E-value=38 Score=22.31 Aligned_cols=11 Identities=36% Similarity=0.727 Sum_probs=8.6
Q ss_pred EEEecCCCccc
Q psy8530 38 VMLTSGGYLKQ 48 (68)
Q Consensus 38 a~v~gGGY~~d 48 (68)
..|++|||..|
T Consensus 48 SIV~SggY~Dd 58 (167)
T 3q0b_X 48 SIVSSGGYNDV 58 (167)
T ss_dssp EEEESSSTTCE
T ss_pred EEEeCCCcccc
Confidence 36779999865
No 288
>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}
Probab=22.43 E-value=61 Score=19.39 Aligned_cols=21 Identities=10% Similarity=0.021 Sum_probs=16.7
Q ss_pred HHHHHhCCCCEEEEecCCCcc
Q psy8530 27 FMKARERRVPIVMLTSGGYLK 47 (68)
Q Consensus 27 ~~~a~~~~IPva~v~gGGY~~ 47 (68)
+++|++.|++++++-.||...
T Consensus 182 i~~a~~aG~~~~~~~~~~~~~ 202 (230)
T 3um9_A 182 ATGAKYFGYPVCWINRSNGVF 202 (230)
T ss_dssp HHHHHHHTCCEEEECTTSCCC
T ss_pred HHHHHHCCCEEEEEeCCCCcc
Confidence 567888999999998876654
No 289
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F, structural GE oxidoreductase; HET: NDP; 1.60A {Escherichia coli} SCOP: c.1.7.1
Probab=22.41 E-value=82 Score=21.45 Aligned_cols=21 Identities=10% Similarity=-0.059 Sum_probs=16.5
Q ss_pred HHHHHHHHhCCCCEEEE--ecCC
Q psy8530 24 ELVFMKARERRVPIVML--TSGG 44 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v--~gGG 44 (68)
.-++++|+++||.+.+- +|||
T Consensus 217 ~~l~~~~~~~gi~v~a~spL~~G 239 (346)
T 1lqa_A 217 VGLAEVSQYEGVELLAYSCLGFG 239 (346)
T ss_dssp HHHHHHHHHHCCEEEEECTTGGG
T ss_pred HHHHHHHHHcCCeEEEecchhhh
Confidence 45899999999998853 4655
No 290
>3pv9_D Putative uncharacterized protein PH1245; crispr, crispr-associated CAS1, metallonuclease, DNAse, PROK system, immune system, nuclease; 2.85A {Pyrococcus horikoshii}
Probab=22.40 E-value=60 Score=22.85 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=16.7
Q ss_pred HHHHHHhCCCCEEEEecCCC
Q psy8530 26 VFMKARERRVPIVMLTSGGY 45 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gGGY 45 (68)
++.+|-++||||.++-.+|+
T Consensus 52 ~l~~l~~~gi~v~f~~~~G~ 71 (322)
T 3pv9_D 52 ALHYIAQKGILIHFFNHYGY 71 (322)
T ss_dssp HHHHHHHTTCEEEEECSSSC
T ss_pred HHHHHHHCCCeEEEECCCCe
Confidence 57889999999998876664
No 291
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*
Probab=22.31 E-value=80 Score=20.56 Aligned_cols=26 Identities=8% Similarity=0.089 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCc
Q psy8530 21 RRDELVFMKARERRVPIVMLTSGGYL 46 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~gGGY~ 46 (68)
++....++.++++|++++.+.|-.|.
T Consensus 24 ~~~~~~l~~l~~~g~~~~iaTGR~~~ 49 (246)
T 3f9r_A 24 DEMRALIKRARGAGFCVGTVGGSDFA 49 (246)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSCHH
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHH
Confidence 45667899999999999999998876
No 292
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=22.29 E-value=44 Score=23.55 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhCCCCEEEEe--cCCCccc
Q psy8530 20 IRRDELVFMKARERRVPIVMLT--SGGYLKQ 48 (68)
Q Consensus 20 ~~RD~~V~~~a~~~~IPva~v~--gGGY~~d 48 (68)
.++=..+++.|.+.++|++++. ||++-.+
T Consensus 139 ~~Ki~r~~e~A~~~~~PvI~l~~sGGarlqe 169 (304)
T 2f9y_B 139 GARFVRAVEQALEDNCPLICFSASGGARMQE 169 (304)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEEESSBCGGG
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCCcCHHH
Confidence 4555678889999999999988 4555533
No 293
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=22.28 E-value=1.5e+02 Score=19.73 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=25.2
Q ss_pred HHHHHHhCCCCEEEEec---C--CC---ccchHHHHHHHHHhHHHcC
Q psy8530 26 VFMKARERRVPIVMLTS---G--GY---LKQTARIIADSILNLADLG 64 (68)
Q Consensus 26 V~~~a~~~~IPva~v~g---G--GY---~~d~~~~v~~si~~l~~~~ 64 (68)
.++.+.+.+||++++-. + ++ ..|.........++|.++|
T Consensus 137 ~~~~l~~~~iPvV~i~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G 183 (348)
T 3bil_A 137 QLEDLQKQGMPVVLVDRELPGDSTIPTATSNPQPGIAAAVELLAHNN 183 (348)
T ss_dssp HHHHHHHC-CCEEEESSCCSCC-CCCEEEEECHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCEEEEcccCCCCCCCCEEEeChHHHHHHHHHHHHHCC
Confidence 46777889999987632 1 11 1245566777888888875
No 294
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=22.27 E-value=58 Score=20.75 Aligned_cols=38 Identities=21% Similarity=0.109 Sum_probs=24.7
Q ss_pred HHHHHHHhCCCCEEEEecCC-------------CccchHHHHHHHHHhHHH
Q psy8530 25 LVFMKARERRVPIVMLTSGG-------------YLKQTARIIADSILNLAD 62 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gGG-------------Y~~d~~~~v~~si~~l~~ 62 (68)
-.++.+++.+||++++-..- ...|.........++|.+
T Consensus 75 ~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~ 125 (309)
T 2fvy_A 75 TVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAK 125 (309)
T ss_dssp HHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHH
Confidence 35677888999998774310 113455666677777777
No 295
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=22.26 E-value=1.6e+02 Score=18.68 Aligned_cols=38 Identities=11% Similarity=-0.039 Sum_probs=24.6
Q ss_pred HHHHHHhCCCCEEEEecC----CC---ccchHHHHHHHHHhHHHcC
Q psy8530 26 VFMKARERRVPIVMLTSG----GY---LKQTARIIADSILNLADLG 64 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gG----GY---~~d~~~~v~~si~~l~~~~ 64 (68)
.++.+. .+||++++-.- ++ ..|.........++|.++|
T Consensus 79 ~~~~l~-~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G 123 (285)
T 3c3k_A 79 ELQNII-GAFPWVQCAEYDPLSTVSSVSIDDVAASEYVVDQLVKSG 123 (285)
T ss_dssp HHHHHH-TTSSEEEESSCCTTSSSCEEECCHHHHHHHHHHHHHHTT
T ss_pred HHHHHh-cCCCEEEEccccCCCCCCEEEEChHHHHHHHHHHHHHcC
Confidence 355666 89999887321 11 1245666777888888875
No 296
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=22.23 E-value=50 Score=19.04 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhCCCCEE-EEecCCCccchHHHHHHHHHhHHHcCCcCC
Q psy8530 22 RDELVFMKARERRVPIV-MLTSGGYLKQTARIIADSILNLADLGLISR 68 (68)
Q Consensus 22 RD~~V~~~a~~~~IPva-~v~gGGY~~d~~~~v~~si~~l~~~~~~~~ 68 (68)
.+..|+......+ |+- .-++--. .=....+...+..|.++|+|.|
T Consensus 41 ~~~~iL~~l~~~~-~~~~~~la~~l-~~~~~tvs~~l~~L~~~glv~r 86 (147)
T 1z91_A 41 PQYLALLLLWEHE-TLTVKKMGEQL-YLDSGTLTPMLKRMEQQGLITR 86 (147)
T ss_dssp HHHHHHHHHHHHS-EEEHHHHHHTT-TCCHHHHHHHHHHHHHHTSEEC
T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHH-CCCcCcHHHHHHHHHHCCCEEe
Confidence 4455666665544 221 1111111 1234578899999999999865
No 297
>1pzm_A HGPRT, hypoxanthine-guanine phosphoribosyltransferase; HET: 5GP; 2.10A {Leishmania tarentolae} SCOP: c.61.1.1
Probab=22.10 E-value=1.2e+02 Score=19.62 Aligned_cols=54 Identities=9% Similarity=-0.026 Sum_probs=30.0
Q ss_pred CCCCCCCcc-cccCCHHHHHHHHHHHHHHHHh---------CCCC-EEEEecCCCccchHHHHHHHH
Q psy8530 2 VHTWMGDQV-DMLEDHLGIIRRDELVFMKARE---------RRVP-IVMLTSGGYLKQTARIIADSI 57 (68)
Q Consensus 2 vD~~~~D~L-~L~lS~~Gi~~RD~~V~~~a~~---------~~IP-va~v~gGGY~~d~~~~v~~si 57 (68)
||+|-.+.+ .+-+|.+.+.++=+..-+...+ ...| |+++..||| .....+++.+
T Consensus 15 v~~~~~~di~~~l~~~~~i~~~~~~La~~i~~~~~~~~~~~~~~~vvvgi~~gG~--~~a~~la~~L 79 (211)
T 1pzm_A 15 VGRRNYPMSARTLVTQEQVWAATAKCAKKIAADYKDFHLTADNPLYLLCVLKGSF--IFTADLARFL 79 (211)
T ss_dssp -----CTTEEEEEECHHHHHHHHHHHHHHHHHHHGGGTCBTTBCEEEEEETTTTH--HHHHHHHHHH
T ss_pred cCcccccccceEEeCHHHHHHHHHHHHHHHHHhcccccccCCCCCEEEEEccchH--HHHHHHHHHH
Confidence 789988788 8889999987765554444332 1233 457779999 3444444433
No 298
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=22.09 E-value=1.4e+02 Score=20.32 Aligned_cols=25 Identities=8% Similarity=0.190 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCCCEEEEecCCCccc
Q psy8530 24 ELVFMKARERRVPIVMLTSGGYLKQ 48 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v~gGGY~~d 48 (68)
.-+++.|.++|+|+++++..|++.+
T Consensus 78 ~~~~~ea~~~Gi~~iVi~t~G~~~~ 102 (288)
T 2nu8_A 78 KDSILEAIDAGIKLIITITEGIPTL 102 (288)
T ss_dssp HHHHHHHHHTTCSEEEECCCCCCHH
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHH
Confidence 3467788899999999899899653
No 299
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=22.06 E-value=1.3e+02 Score=22.32 Aligned_cols=44 Identities=9% Similarity=0.127 Sum_probs=32.2
Q ss_pred cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCccchHHHHH
Q psy8530 11 DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIA 54 (68)
Q Consensus 11 ~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~d~~~~v~ 54 (68)
.++-|.+.+.++=.-+.+.|+++|+.|.+...-+|..+.+.+++
T Consensus 141 ~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~~eda~r~d~~~~~~ 184 (423)
T 3ivs_A 141 SHGKDMTYIIDSATEVINFVKSKGIEVRFSSEDSFRSDLVDLLS 184 (423)
T ss_dssp ------CHHHHHHHHHHHHHHTTTCEEEEEEESGGGSCHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHCCCEEEEEEccCcCCCHHHHHH
Confidence 46778888888888899999999999998887788877776543
No 300
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=22.04 E-value=76 Score=19.59 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=14.5
Q ss_pred HHHHHHHHhCCCCEEEE
Q psy8530 24 ELVFMKARERRVPIVML 40 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v 40 (68)
..+-..|..++||+..+
T Consensus 57 ~~i~~lc~~~~Ip~~~v 73 (126)
T 2xzm_U 57 KLVKALCAKNEIKYVSV 73 (126)
T ss_dssp HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 46778999999999976
No 301
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=21.90 E-value=1.1e+02 Score=22.29 Aligned_cols=46 Identities=24% Similarity=0.221 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCE-----------------------EEEecCCCccchHHHHHHHHHhHH
Q psy8530 16 HLGIIRRDELVFMKARERRVPI-----------------------VMLTSGGYLKQTARIIADSILNLA 61 (68)
Q Consensus 16 ~~Gi~~RD~~V~~~a~~~~IPv-----------------------a~v~gGGY~~d~~~~v~~si~~l~ 61 (68)
..|..+=+..+.+.|+++|||| +++..+|=++-.++.+..-|++++
T Consensus 79 at~~~~~n~~i~~~a~~~~i~vn~~d~~e~~~~~~pa~~~~~~l~iaIsT~Gksp~la~~ir~~ie~~l 147 (457)
T 1pjq_A 79 ATDDDTVNQRVSDAAESRRIFCNVVDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLARLLREKLESLL 147 (457)
T ss_dssp CCSCHHHHHHHHHHHHHTTCEEEETTCTTSSSEECCEEEEETTEEEEEECTTSCHHHHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEECCCcccCceEeeeEEEeCCeEEEEECCCCChHHHHHHHHHHHHhc
Confidence 3455556889999999999986 233466766666666666666554
No 302
>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}
Probab=21.90 E-value=68 Score=18.78 Aligned_cols=19 Identities=11% Similarity=0.295 Sum_probs=15.3
Q ss_pred HHHHHHHhCCCCEEEEecC
Q psy8530 25 LVFMKARERRVPIVMLTSG 43 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gG 43 (68)
-+++.++++|+|++.+.++
T Consensus 89 ~~l~~l~~~g~~~~i~s~~ 107 (219)
T 3kd3_A 89 ELVQDLKNKGFEIWIFSGG 107 (219)
T ss_dssp HHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHCCCeEEEEcCC
Confidence 3688899999999877754
No 303
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=21.71 E-value=1.8e+02 Score=19.12 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=16.6
Q ss_pred HHHHHHHHhCCCCEEEEecCC
Q psy8530 24 ELVFMKARERRVPIVMLTSGG 44 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v~gGG 44 (68)
+..++.|.+.|.|.+++--|+
T Consensus 117 ~~~i~~A~~lGa~~v~~~~g~ 137 (316)
T 3qxb_A 117 KRAIDMTAAMEVPATGMPFGS 137 (316)
T ss_dssp HHHHHHHHHTTCCEEEECCBB
T ss_pred HHHHHHHHHcCCCEEEecCCC
Confidence 457899999999998765454
No 304
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=21.67 E-value=46 Score=19.93 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=15.6
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
...+.+.|..|.++|||.|
T Consensus 65 ~~tvs~~v~~Le~~Glv~r 83 (147)
T 4b8x_A 65 PTSVTNTVDRLVRSGLVAK 83 (147)
T ss_dssp HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHhCCCEEE
Confidence 3478889999999999865
No 305
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=21.57 E-value=31 Score=20.86 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=14.4
Q ss_pred HHHHHHhCCCCEEEEecCCCcc
Q psy8530 26 VFMKARERRVPIVMLTSGGYLK 47 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gGGY~~ 47 (68)
+++..+++++||+++.| |+.
T Consensus 71 l~~~lr~~~ipvI~lTa--~~~ 90 (123)
T 2lpm_A 71 VADILAERNVPFIFATG--YGS 90 (123)
T ss_dssp HHHHHHHTCCSSCCBCT--TCT
T ss_pred HHHHHHcCCCCEEEEec--Ccc
Confidence 56677788999887764 543
No 306
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=21.56 E-value=43 Score=19.08 Aligned_cols=19 Identities=16% Similarity=0.309 Sum_probs=15.7
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
...+...+..|.++|+|.|
T Consensus 64 ~~~vs~~l~~Le~~glv~r 82 (142)
T 2fbi_A 64 RPSMTGVLARLERDGIVRR 82 (142)
T ss_dssp HHHHHHHHHHHHHTTSEEE
T ss_pred HhHHHHHHHHHHHCCCEEe
Confidence 4478889999999999864
No 307
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=21.49 E-value=79 Score=19.57 Aligned_cols=17 Identities=12% Similarity=0.290 Sum_probs=13.8
Q ss_pred HHHHHHHHhCCCCEEEE
Q psy8530 24 ELVFMKARERRVPIVML 40 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v 40 (68)
..+-..|..++||+..+
T Consensus 74 ~~l~~lc~~~~IP~~~v 90 (135)
T 2aif_A 74 LHLPLVCEDKNTPYVFV 90 (135)
T ss_dssp HHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHhcCCcEEEE
Confidence 45678899999998766
No 308
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=21.45 E-value=1.1e+02 Score=22.74 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhCCCCEEEEecCC---------Cc-cchHHHHHHHHHh
Q psy8530 22 RDELVFMKARERRVPIVMLTSGG---------YL-KQTARIIADSILN 59 (68)
Q Consensus 22 RD~~V~~~a~~~~IPva~v~gGG---------Y~-~d~~~~v~~si~~ 59 (68)
|=+.|.+.|+++++|+-.-.=.| |. ...+.+|+...++
T Consensus 121 ~~~~vv~~ak~~~~piRIGvN~GSL~~~ll~~yg~~~~eamVeSAl~~ 168 (366)
T 3noy_A 121 IVREIVEEAKRRGVAVRIGVNSGSLEKDLLEKYGYPSAEALAESALRW 168 (366)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEecCCcCCCHHHHHhcCCCCHHHHHHHHHHH
Confidence 44579999999999999766444 54 3455666665554
No 309
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=21.34 E-value=48 Score=19.13 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=15.5
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
...+...+..|.++|+|.|
T Consensus 65 ~~~vs~~l~~L~~~Glv~r 83 (143)
T 3oop_A 65 TPTVNRIVDVLLRKELIVR 83 (143)
T ss_dssp HHHHHHHHHHHHHTTSEEE
T ss_pred HhhHHHHHHHHHHCCCeec
Confidence 3468889999999999864
No 310
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=21.28 E-value=1.4e+02 Score=21.45 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCCCEEEE-ecCCC
Q psy8530 24 ELVFMKARERRVPIVML-TSGGY 45 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v-~gGGY 45 (68)
+.+++.+++.|+++-.+ +|||+
T Consensus 216 ~~~~~~~~~~G~~~~~ldiGGG~ 238 (448)
T 3btn_A 216 RCVFDMAGEFGFTMNMLDIGGGF 238 (448)
T ss_dssp HHHHHHHHHTTCCCCEEECCSCC
T ss_pred HHHHHHHHHcCCCCCEEEeCCCc
Confidence 46778888899877655 79999
No 311
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=21.27 E-value=44 Score=19.16 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=15.6
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
...+...+..|.++|+|.|
T Consensus 61 ~~tvs~~l~~Le~~Gli~r 79 (139)
T 3eco_A 61 GPTVSNLLRNLERKKLIYR 79 (139)
T ss_dssp HHHHHHHHHHHHHTTSEEE
T ss_pred cccHHHHHHHHHHCCCEee
Confidence 3478889999999999864
No 312
>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}
Probab=21.21 E-value=45 Score=19.92 Aligned_cols=17 Identities=6% Similarity=0.053 Sum_probs=14.4
Q ss_pred HHHHHhCCCCEEEEecC
Q psy8530 27 FMKARERRVPIVMLTSG 43 (68)
Q Consensus 27 ~~~a~~~~IPva~v~gG 43 (68)
+++|++.|++++++-.+
T Consensus 186 i~~a~~aG~~~~~~~~~ 202 (240)
T 3smv_A 186 HIPANDAGLVSAWIYRR 202 (240)
T ss_dssp HHHHHHHTCEEEEECTT
T ss_pred hHHHHHcCCeEEEEcCC
Confidence 46788899999999877
No 313
>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14
Probab=21.16 E-value=76 Score=19.01 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=14.4
Q ss_pred HHHHHhCCCCEEEEecCCCc
Q psy8530 27 FMKARERRVPIVMLTSGGYL 46 (68)
Q Consensus 27 ~~~a~~~~IPva~v~gGGY~ 46 (68)
+++++..|+++++|..|...
T Consensus 207 i~~~~~aG~~~~~v~~g~~~ 226 (250)
T 2c4n_A 207 ILAGFQAGLETILVLSGVSS 226 (250)
T ss_dssp HHHHHHTTCEEEEESSSSCC
T ss_pred HHHHHHcCCeEEEECCCCCC
Confidence 46777889998887765443
No 314
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*
Probab=21.15 E-value=80 Score=18.84 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=15.5
Q ss_pred HHHHHHHhCCCCEEEEecC
Q psy8530 25 LVFMKARERRVPIVMLTSG 43 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gG 43 (68)
-+++.++++|+|++.+.++
T Consensus 77 ~~l~~l~~~g~~~~i~s~~ 95 (205)
T 3m9l_A 77 ELVRELAGRGYRLGILTRN 95 (205)
T ss_dssp HHHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHhcCCeEEEEeCC
Confidence 3678899999999887665
No 315
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=20.99 E-value=45 Score=19.10 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=15.4
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
...+...+..|.++|+|.|
T Consensus 66 ~~~vs~~l~~L~~~glv~r 84 (146)
T 2fbh_A 66 GPTLARLLDGLESQGLVRR 84 (146)
T ss_dssp HHHHHHHHHHHHHTTSEEE
T ss_pred hhhHHHHHHHHHHCCCeee
Confidence 3478889999999999864
No 316
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=20.96 E-value=45 Score=19.02 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=15.4
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
...+...+..|.++|+|.|
T Consensus 62 ~~tvs~~l~~L~~~gli~r 80 (138)
T 1jgs_A 62 LGALTRMLDRLVCKGWVER 80 (138)
T ss_dssp HHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHHHCCCEEe
Confidence 3478889999999999864
No 317
>2yzs_A Putative uncharacterized protein; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; 2.00A {Aquifex aeolicus}
Probab=20.94 E-value=58 Score=22.86 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCCEEEEecCCC
Q psy8530 25 LVFMKARERRVPIVMLTSGGY 45 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gGGY 45 (68)
.++..|-++||||+++-.+|+
T Consensus 49 ~~l~~l~~~gi~v~f~~~~G~ 69 (315)
T 2yzs_A 49 KLLNFLASKGIPLHFFNYYGY 69 (315)
T ss_dssp HHHHHHHHHTCCEEEECTTSC
T ss_pred HHHHHHHHCCCeEEEECCCCC
Confidence 357889999999999987664
No 318
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.94 E-value=34 Score=20.84 Aligned_cols=28 Identities=4% Similarity=-0.089 Sum_probs=22.7
Q ss_pred cccCCHHHHHHHHHHHHHHHHhCCCCEE
Q psy8530 11 DMLEDHLGIIRRDELVFMKARERRVPIV 38 (68)
Q Consensus 11 ~L~lS~~Gi~~RD~~V~~~a~~~~IPva 38 (68)
.=.++.+...+|=+.+|+.|++.|||..
T Consensus 57 ~~~l~~~~~~~n~~~af~~a~~LGi~~l 84 (119)
T 2d89_A 57 YKSLNPQDIKENNKKAYDGFASIGISRL 84 (119)
T ss_dssp GGGCCTTCSHHHHHHHHHHHHHHTCCCC
T ss_pred hhhhcccCHHHHHHHHHHHHHHhCCCcc
Confidence 3445667778999999999999999974
No 319
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4
Probab=20.94 E-value=69 Score=24.89 Aligned_cols=28 Identities=21% Similarity=0.146 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhCCCCEEEEe--cCCCccc
Q psy8530 21 RRDELVFMKARERRVPIVMLT--SGGYLKQ 48 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~--gGGY~~d 48 (68)
++=..+++.|.+.++|++++. ||.+-.+
T Consensus 127 ~Ki~r~~e~A~~~~lPvI~l~dSgGArlqe 156 (587)
T 1pix_A 127 ECLLRASDTAKTLHVPLVYVLNCSGVKFDE 156 (587)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCEECGGG
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCCCccc
Confidence 455668999999999999888 6666544
No 320
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Probab=20.92 E-value=38 Score=26.12 Aligned_cols=19 Identities=42% Similarity=0.398 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhCCCCEEE
Q psy8530 21 RRDELVFMKARERRVPIVM 39 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~ 39 (68)
-||+-|++.|-++||+.++
T Consensus 438 iRD~evI~aane~giaMvf 456 (464)
T 1zcz_A 438 IRDEEVIEKARELGITFYK 456 (464)
T ss_dssp TTHHHHHHHHHHHTCEEEE
T ss_pred cCcHHHHHHHHHcCCeEEE
Confidence 3899999999999976544
No 321
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4
Probab=20.87 E-value=1.1e+02 Score=23.72 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=26.5
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCCCEEEEe-cCCCcc
Q psy8530 13 LEDHLGIIRRDELVFMKARERRVPIVMLT-SGGYLK 47 (68)
Q Consensus 13 ~lS~~Gi~~RD~~V~~~a~~~~IPva~v~-gGGY~~ 47 (68)
.+..+|-.+=-++| ++|.+.+||++++. --||..
T Consensus 386 ~l~~~~a~Kaarfi-~~c~~~~iPlv~lvDtpGf~~ 420 (587)
T 1pix_A 386 KLYRQGLVKMNEFV-TLCARDRLPIVWIQDTTGIDV 420 (587)
T ss_dssp EECHHHHHHHHHHH-HHHHHTTCCEEEEECCCEECC
T ss_pred CcCHHHHHHHHHHH-HHhhcCCCCeEEEecCCCCCC
Confidence 47788887777888 79999999999888 455543
No 322
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=20.82 E-value=56 Score=21.58 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=16.8
Q ss_pred HHHHHHHHhCCCCEEEEecCCC
Q psy8530 24 ELVFMKARERRVPIVMLTSGGY 45 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~v~gGGY 45 (68)
..|.+.|+++|||+..+----|
T Consensus 43 ~~v~~~A~~~gIp~~~~~~~~~ 64 (212)
T 3av3_A 43 AKVIERAARENVPAFVFSPKDY 64 (212)
T ss_dssp CHHHHHHHHTTCCEEECCGGGS
T ss_pred cHHHHHHHHcCCCEEEeCcccc
Confidence 4688999999999986544334
No 323
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A
Probab=20.79 E-value=40 Score=23.95 Aligned_cols=30 Identities=13% Similarity=-0.024 Sum_probs=25.3
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHHhC
Q psy8530 4 TWMGDQVDMLEDHLGIIRRDELVFMKARER 33 (68)
Q Consensus 4 ~~~~D~L~L~lS~~Gi~~RD~~V~~~a~~~ 33 (68)
++.+|...+.++.+-|.+||+++-++.+..
T Consensus 228 ~~KgD~~~~~VAAASIlARD~~m~~l~~~~ 257 (310)
T 2d0b_A 228 LPKAESVHVSVAAASIIARYVFLEEMEQLS 257 (310)
T ss_dssp ETTGGGTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeccccccHHHHHHHHHHHHHHHHHHHHhC
Confidence 356888889999999999999999887653
No 324
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=20.74 E-value=1e+02 Score=19.43 Aligned_cols=28 Identities=7% Similarity=0.021 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCCc
Q psy8530 19 IIRRDELVFMKARERRVPIVMLTSGGYL 46 (68)
Q Consensus 19 i~~RD~~V~~~a~~~~IPva~v~gGGY~ 46 (68)
+.++....++.++++|++++...|=.|.
T Consensus 21 i~~~~~~al~~l~~~G~~~~~aTGR~~~ 48 (258)
T 2pq0_A 21 LPLSTIEAVRRLKQSGVYVAIATGRAPF 48 (258)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEECSSCGG
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCChH
Confidence 4466777899999999999988887775
No 325
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10
Probab=20.73 E-value=1.1e+02 Score=19.22 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCCc
Q psy8530 19 IIRRDELVFMKARERRVPIVMLTSGGYL 46 (68)
Q Consensus 19 i~~RD~~V~~~a~~~~IPva~v~gGGY~ 46 (68)
+.++....++.++++|++++.+.|-.|.
T Consensus 21 i~~~~~~al~~l~~~G~~v~i~TGR~~~ 48 (231)
T 1wr8_A 21 IHEKALEAIRRAESLGIPIMLVTGNTVQ 48 (231)
T ss_dssp BCHHHHHHHHHHHHTTCCEEEECSSCHH
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCChh
Confidence 4456777899999999999887776553
No 326
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=20.68 E-value=45 Score=19.29 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=15.5
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
...+...+..|.++|+|.|
T Consensus 70 ~~tvs~~l~~Le~~Glv~r 88 (150)
T 2rdp_A 70 CSTTTDLVDRMERNGLVAR 88 (150)
T ss_dssp HHHHHHHHHHHHHTTSEEE
T ss_pred chhHHHHHHHHHHCCCeee
Confidence 4478889999999999864
No 327
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=20.67 E-value=59 Score=18.79 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhCCCCEEE-Eec--CCCccchHHHHHHHHHhHHHcCCcCC
Q psy8530 18 GIIRRDELVFMKARERRVPIVM-LTS--GGYLKQTARIIADSILNLADLGLISR 68 (68)
Q Consensus 18 Gi~~RD~~V~~~a~~~~IPva~-v~g--GGY~~d~~~~v~~si~~l~~~~~~~~ 68 (68)
|+-..+..||......+ |+-. -++ =|. ....+.+.+..|.++|++.|
T Consensus 37 ~l~~~~~~iL~~l~~~~-~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r 86 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSAS-DCSVQKISDILGL---DKAAVSRTVKKLEEKKYIEV 86 (148)
T ss_dssp TCCHHHHHHHHHHHHSS-SBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC
T ss_pred CCCHHHHHHHHHHHcCC-CCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEe
Confidence 44445666777776654 2211 011 112 23478899999999999865
No 328
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Probab=20.60 E-value=31 Score=24.13 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=17.2
Q ss_pred HHHHHHHhCCCCEEE--EecCCC
Q psy8530 25 LVFMKARERRVPIVM--LTSGGY 45 (68)
Q Consensus 25 ~V~~~a~~~~IPva~--v~gGGY 45 (68)
-++++|+++||++.+ .+++|.
T Consensus 227 ~ll~~~~~~gI~v~a~spL~~G~ 249 (353)
T 3erp_A 227 GLLALLQEKGVGSIAFSPLAGGQ 249 (353)
T ss_dssp THHHHHHHHTCEEEEBSTTGGGT
T ss_pred HHHHHHHHcCCeEEEeccccccc
Confidence 489999999999986 457774
No 329
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=20.58 E-value=65 Score=18.90 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=15.6
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
...+...+..|.++|+|.|
T Consensus 77 ~~tvs~~l~~Le~~glv~r 95 (162)
T 2fa5_A 77 KVAVSRAVARLLERGFIRR 95 (162)
T ss_dssp HHHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHHHHHCCCEee
Confidence 3468888999999999865
No 330
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=20.44 E-value=50 Score=19.63 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=15.8
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
...+.+.+..|.++|+|.|
T Consensus 81 ~~~vs~~l~~Le~~Glv~r 99 (161)
T 3e6m_A 81 QSTTSRTVDQLVDEGLAAR 99 (161)
T ss_dssp HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHCCCEEe
Confidence 3478899999999999864
No 331
>3nkd_A Crispr-associated protein CAS1; crispr,CAS1,YGBT,nuclease, DNA recombination, DNA repair, IM system; 1.95A {Escherichia coli}
Probab=20.37 E-value=56 Score=23.14 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=17.6
Q ss_pred HHHHHHhCCCCEEEEecCCC
Q psy8530 26 VFMKARERRVPIVMLTSGGY 45 (68)
Q Consensus 26 V~~~a~~~~IPva~v~gGGY 45 (68)
++.+|-++||||+++-.+|+
T Consensus 64 al~~la~~gI~v~f~~~~G~ 83 (305)
T 3nkd_A 64 AVRLAAQVGTLLVWVGEAGV 83 (305)
T ss_dssp HHHHHHHTTCEEEEESGGGS
T ss_pred HHHHHHHCCCeEEEECCCCc
Confidence 57889999999999988885
No 332
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=20.36 E-value=72 Score=20.27 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCCC
Q psy8530 16 HLGIIRRDELVFMKARERRVPIVMLTSGGY 45 (68)
Q Consensus 16 ~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY 45 (68)
...+.++...+++.+++.|++++.+.|=.|
T Consensus 20 ~~~i~~~~~~al~~l~~~G~~~~iaTGR~~ 49 (279)
T 3mpo_A 20 KNELAQATIDAVQAAKAQGIKVVLCTGRPL 49 (279)
T ss_dssp ----CHHHHHHHHHHHHTTCEEEEECSSCH
T ss_pred CCcCCHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 345667778889999999999888776544
No 333
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=20.25 E-value=56 Score=19.06 Aligned_cols=17 Identities=12% Similarity=0.251 Sum_probs=14.8
Q ss_pred HHHHHHHhHHHcCCcCC
Q psy8530 52 IIADSILNLADLGLISR 68 (68)
Q Consensus 52 ~v~~si~~l~~~~~~~~ 68 (68)
.+...+..|.++|+|.|
T Consensus 67 ~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 67 AVSRRVKKLLNAELVKL 83 (151)
T ss_dssp HHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHHHCCCEEe
Confidence 67889999999999875
No 334
>3isx_A Endoglucanase; TM1050, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima}
Probab=20.22 E-value=1.2e+02 Score=21.62 Aligned_cols=27 Identities=11% Similarity=-0.090 Sum_probs=19.6
Q ss_pred HHHHHHHHhCCCCEEE-EecCCCccchHH
Q psy8530 24 ELVFMKARERRVPIVM-LTSGGYLKQTAR 51 (68)
Q Consensus 24 ~~V~~~a~~~~IPva~-v~gGGY~~d~~~ 51 (68)
+.+.+.|++.|||.-. ++.| ++.|...
T Consensus 271 ~~l~~~A~~~gIp~Q~~v~~g-gGTDa~~ 298 (343)
T 3isx_A 271 ENLIEIAEKFDIKYQMEVLTF-GGTNAMG 298 (343)
T ss_dssp HHHHHHHHHTTCCCEECCCBC-CCSSHHH
T ss_pred HHHHHHHHHCCCCeEEecCCC-CchHHHH
Confidence 4577889999999987 4444 4667654
No 335
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=20.20 E-value=40 Score=24.59 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEe
Q psy8530 21 RRDELVFMKARERRVPIVMLT 41 (68)
Q Consensus 21 ~RD~~V~~~a~~~~IPva~v~ 41 (68)
.+|...+..|...|||++++.
T Consensus 132 ~~d~qAI~EA~~lnIPtIALv 152 (305)
T 3iz6_A 132 RTDHQPIKESALGNIPTIAFC 152 (305)
T ss_dssp TTTHHHHHHHHHHTCCEEEEE
T ss_pred ccchHHHHHHHHcCCCEEEEE
Confidence 467888999999999999876
No 336
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*
Probab=20.19 E-value=82 Score=19.62 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=15.4
Q ss_pred HHHHHHHhCCCCEEEEecC
Q psy8530 25 LVFMKARERRVPIVMLTSG 43 (68)
Q Consensus 25 ~V~~~a~~~~IPva~v~gG 43 (68)
-+++.++++|+|++++.|+
T Consensus 151 ~~l~~l~~~g~~~~i~T~~ 169 (280)
T 3skx_A 151 EAISKLKAIGIKCMMLTGD 169 (280)
T ss_dssp HHHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHHCCCEEEEEeCC
Confidence 4688899999999877654
No 337
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=20.14 E-value=47 Score=19.13 Aligned_cols=51 Identities=14% Similarity=0.042 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHh-CCCCE-EEEecCCCccchHHHHHHHHHhHHHcCCcCC
Q psy8530 16 HLGIIRRDELVFMKARE-RRVPI-VMLTSGGYLKQTARIIADSILNLADLGLISR 68 (68)
Q Consensus 16 ~~Gi~~RD~~V~~~a~~-~~IPv-a~v~gGGY~~d~~~~v~~si~~l~~~~~~~~ 68 (68)
..|+-..+..||..... .+ |+ ..-++-=. .=....+...+..|.++|+|.|
T Consensus 30 ~~~l~~~~~~iL~~l~~~~~-~~~~~~la~~l-~i~~~~vs~~l~~Le~~glv~r 82 (147)
T 2hr3_A 30 ADPVQFSQLVVLGAIDRLGG-DVTPSELAAAE-RMRSSNLAALLRELERGGLIVR 82 (147)
T ss_dssp CCHHHHHHHHHHHHHHHTTS-CBCHHHHHHHT-TCCHHHHHHHHHHHHHTTSEEE
T ss_pred ccCCCHHHHHHHHHHHHcCC-CCCHHHHHHHh-CCChhhHHHHHHHHHHCCCEee
Confidence 44666777778877766 32 11 00001000 0124478889999999999864
No 338
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=20.14 E-value=53 Score=18.97 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=15.5
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
...+...+..|.++|+|.|
T Consensus 64 ~~tvs~~l~~Le~~Glv~r 82 (144)
T 3f3x_A 64 QSAITAAVDKLEAKGLVRR 82 (144)
T ss_dssp HHHHHHHHHHHHHTTSEEE
T ss_pred hhHHHHHHHHHHHCCCEEe
Confidence 3478889999999999864
No 339
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=20.09 E-value=47 Score=18.83 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=15.7
Q ss_pred HHHHHHHHHhHHHcCCcCC
Q psy8530 50 ARIIADSILNLADLGLISR 68 (68)
Q Consensus 50 ~~~v~~si~~l~~~~~~~~ 68 (68)
...+.+.+..|.++|+|.|
T Consensus 66 ~~tvs~~l~~L~~~glv~r 84 (140)
T 2nnn_A 66 AATIKGVVERLDKRGLIQR 84 (140)
T ss_dssp HHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHCCCEEe
Confidence 4578889999999999864
No 340
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=20.03 E-value=1.7e+02 Score=18.37 Aligned_cols=37 Identities=14% Similarity=0.201 Sum_probs=24.5
Q ss_pred HHHHhCCCCEEEEecC--CC---ccchHHHHHHHHHhHHHcC
Q psy8530 28 MKARERRVPIVMLTSG--GY---LKQTARIIADSILNLADLG 64 (68)
Q Consensus 28 ~~a~~~~IPva~v~gG--GY---~~d~~~~v~~si~~l~~~~ 64 (68)
..+.+.+||++++-.- ++ ..|.........++|.++|
T Consensus 85 ~~~~~~~iPvV~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G 126 (289)
T 3g85_A 85 LNKASLTLPIILFNRLSNKYSSVNVDNYKMGEKASLLFAKKR 126 (289)
T ss_dssp HHHCCCSSCEEEESCCCSSSEEEEECHHHHHHHHHHHHHHTT
T ss_pred HHhccCCCCEEEECCCCCCCCEEEeCHHHHHHHHHHHHHHcC
Confidence 3445789999876431 11 2356677788888888875
Done!