RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8530
         (68 letters)



>3g9k_L Capsule biosynthesis protein CAPD; CAPD protein, the great lakes
           regional C excellence, GLRCE, capsule
           biogenesis/degradation; HET: GLU; 1.79A {Bacillus
           anthracis} PDB: 3ga9_L*
          Length = 323

 Score = 24.8 bits (55), Expect = 2.1
 Identities = 3/23 (13%), Positives = 8/23 (34%)

Query: 35  VPIVMLTSGGYLKQTARIIADSI 57
           +    + S  Y+        D++
Sbjct: 294 MDPNKMVSDKYISTMKNENGDAL 316


>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase,
          CYP170A1, molecular mechanism, heme, iron,
          metal-binding, monooxygenase; HET: HEM; 2.60A
          {Streptomyces coelicolor A3} PDB: 3el3_A*
          Length = 467

 Score = 23.8 bits (52), Expect = 5.5
 Identities = 8/29 (27%), Positives = 11/29 (37%)

Query: 16 HLGIIRRDELVFMKARERRVPIVMLTSGG 44
          H   + RD L FM        +V +  G 
Sbjct: 36 HGWRLARDPLAFMSQLRDHGDVVRIKLGP 64


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.142    0.410 

Gapped
Lambda     K      H
   0.267   0.0812    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,099,213
Number of extensions: 55947
Number of successful extensions: 224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 26
Length of query: 68
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 30
Effective length of database: 5,640,795
Effective search space: 169223850
Effective search space used: 169223850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.3 bits)