RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8530
         (68 letters)



>d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB
          {Escherichia coli [TaxId: 562]}
          Length = 262

 Score = 24.7 bits (53), Expect = 0.95
 Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 2/30 (6%)

Query: 27 FMKARERRVPIVMLTSGGYLKQTARIIADS 56
            K ++ +     +T+  Y    A++ AD 
Sbjct: 7  LQKYKQEKKRFATITA--YDYSFAKLFADE 34


>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
           Pyrococcus furiosus [TaxId: 2261]}
          Length = 237

 Score = 23.5 bits (49), Expect = 3.0
 Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 17  LGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLA 61
           L +I  D  +  +     +P V         +    +A+ I  LA
Sbjct: 194 LAVIPEDPAI-REGTLEGIPAVKYKPESKGAKAFVKLAEEIEKLA 237


>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase
           (transcarboxylase 12S) {Propionibacterium freudenreichii
           [TaxId: 1744]}
          Length = 264

 Score = 23.2 bits (49), Expect = 3.1
 Identities = 8/55 (14%), Positives = 19/55 (34%)

Query: 1   MVHTWMGDQVDMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIAD 55
            +    G    + +++ GIIR    +     E  VP + +        +   + +
Sbjct: 107 QLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCN 161


>d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK
           {Porphyromonas gingivalis [TaxId: 837]}
          Length = 188

 Score = 23.2 bits (50), Expect = 3.1
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 5/37 (13%)

Query: 19  IIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIAD 55
           I+         A ER   I +L++G + + TARI +D
Sbjct: 126 ILYHT-----PAGERPQGIALLSTGNFNETTARIYSD 157


>d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK
           {Escherichia coli [TaxId: 562]}
          Length = 187

 Score = 22.8 bits (49), Expect = 3.8
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 25  LVFMKARERRVPIVMLTSGGYLKQTARIIAD 55
           L+  K     V    + +G + ++TAR+  D
Sbjct: 126 LISRKENGEVVRYAHIGTGNFNEKTARLYTD 156


>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 364

 Score = 22.4 bits (47), Expect = 5.8
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 5/38 (13%)

Query: 18  GIIRRDELVFMKARERRVPIVMLTSGGY-LKQTARIIA 54
           GI +  + +     + ++  ++L  GGY L  TAR   
Sbjct: 270 GIGKCLKYI----LQWQLATLILGGGGYNLANTARCWT 303


>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId:
          274]}
          Length = 385

 Score = 22.4 bits (46), Expect = 5.9
 Identities = 7/30 (23%), Positives = 14/30 (46%)

Query: 16 HLGIIRRDELVFMKARERRVPIVMLTSGGY 45
          +L  +++D L  + A  R  P + L    +
Sbjct: 12 YLKDLQQDPLAVLLAWGRAHPRLFLPLPRF 41


>d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB
          {Neisseria meningitidis [TaxId: 487]}
          Length = 260

 Score = 22.0 bits (46), Expect = 7.8
 Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%)

Query: 27 FMKARERRVPIVMLTSGGYLKQTARIIADS 56
            K +     I MLT+  Y    A ++ D+
Sbjct: 7  LQKMKAAGEKIAMLTA--YESSFAALMDDA 34


>d2jfga1 c.5.1.1 (A:1-93)
          UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
          {Escherichia coli [TaxId: 562]}
          Length = 93

 Score = 22.0 bits (46), Expect = 8.4
 Identities = 4/19 (21%), Positives = 6/19 (31%)

Query: 20 IRRDELVFMKARERRVPIV 38
          I         A +  + IV
Sbjct: 74 IALAHPSLSAAADAGIEIV 92


>d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB
          {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 262

 Score = 22.0 bits (46), Expect = 8.9
 Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%)

Query: 27 FMKARERRVPIVMLTSGGYLKQTARIIADS 56
            + +       MLT+  Y   TARI  ++
Sbjct: 9  LQRWKADGHKWAMLTA--YDYSTARIFDEA 36


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.142    0.410 

Gapped
Lambda     K      H
   0.267   0.0638    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 256,987
Number of extensions: 9824
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 18
Length of query: 68
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 31
Effective length of database: 1,899,586
Effective search space: 58887166
Effective search space used: 58887166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.1 bits)