Query psy8536
Match_columns 186
No_of_seqs 242 out of 1286
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 21:25:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8536.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8536hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cue_A Paired box protein PAX6 99.9 1.7E-21 5.8E-26 125.6 10.4 68 3-70 5-72 (80)
2 1nk2_P Homeobox protein VND; h 99.9 1.5E-21 5.1E-26 125.0 9.8 66 2-67 6-71 (77)
3 2dmq_A LIM/homeobox protein LH 99.9 2E-21 6.8E-26 125.3 9.4 67 2-68 4-70 (80)
4 2h1k_A IPF-1, pancreatic and d 99.9 1.5E-21 5.1E-26 120.2 8.4 60 4-63 2-61 (63)
5 1ig7_A Homeotic protein MSX-1; 99.9 1.8E-21 6E-26 118.0 8.5 57 6-62 1-57 (58)
6 2hdd_A Protein (engrailed home 99.9 1E-21 3.6E-26 120.2 7.4 58 5-62 3-60 (61)
7 1akh_A Protein (mating-type pr 99.9 6.1E-22 2.1E-26 121.2 6.3 61 1-61 1-61 (61)
8 3a01_A Homeodomain-containing 99.9 1.5E-21 5.1E-26 129.2 8.6 71 2-72 14-84 (93)
9 2dmt_A Homeobox protein BARH-l 99.9 1.2E-21 4.2E-26 126.2 7.8 62 2-63 14-75 (80)
10 1puf_A HOX-1.7, homeobox prote 99.9 3E-21 1E-25 123.5 9.5 65 2-66 10-74 (77)
11 2dmu_A Homeobox protein goosec 99.9 2.6E-21 8.7E-26 121.7 8.9 62 3-64 5-66 (70)
12 2dms_A Homeobox protein OTX2; 99.9 1.1E-21 3.9E-26 126.4 7.2 65 2-66 4-68 (80)
13 2vi6_A Homeobox protein nanog; 99.9 5E-22 1.7E-26 122.0 5.1 60 4-63 2-61 (62)
14 2cra_A Homeobox protein HOX-B1 99.9 1.2E-21 4.1E-26 123.2 6.9 62 2-63 4-65 (70)
15 1zq3_P PRD-4, homeotic bicoid 99.9 2.9E-21 9.9E-26 120.7 8.4 63 5-67 2-64 (68)
16 1fjl_A Paired protein; DNA-bin 99.9 4.3E-21 1.5E-25 124.0 9.4 64 2-65 15-78 (81)
17 2da2_A Alpha-fetoprotein enhan 99.8 2.8E-21 9.6E-26 121.5 7.9 62 2-63 4-65 (70)
18 1ahd_P Antennapedia protein mu 99.8 2.8E-21 9.6E-26 120.7 7.7 61 5-65 2-62 (68)
19 1jgg_A Segmentation protein EV 99.8 4E-21 1.4E-25 117.2 8.2 58 6-63 2-59 (60)
20 2da1_A Alpha-fetoprotein enhan 99.8 2.3E-21 8E-26 121.9 7.2 62 2-63 4-65 (70)
21 2e1o_A Homeobox protein PRH; D 99.8 6.7E-21 2.3E-25 119.7 9.2 62 3-64 5-66 (70)
22 2l7z_A Homeobox protein HOX-A1 99.8 3.8E-21 1.3E-25 121.8 7.7 62 3-64 5-66 (73)
23 1ftt_A TTF-1 HD, thyroid trans 99.8 5.8E-21 2E-25 119.3 8.3 61 5-65 2-62 (68)
24 1bw5_A ISL-1HD, insulin gene e 99.8 2.6E-21 8.8E-26 120.3 6.6 60 4-63 2-61 (66)
25 1yz8_P Pituitary homeobox 2; D 99.8 1.7E-21 5.8E-26 121.8 5.8 63 4-66 2-64 (68)
26 2djn_A Homeobox protein DLX-5; 99.8 2.5E-21 8.6E-26 121.7 6.2 62 2-63 4-65 (70)
27 1wh5_A ZF-HD homeobox family p 99.8 2.2E-21 7.4E-26 124.8 5.8 59 3-61 15-77 (80)
28 3rkq_A Homeobox protein NKX-2. 99.8 7.3E-21 2.5E-25 115.3 7.7 57 5-61 2-58 (58)
29 2da3_A Alpha-fetoprotein enhan 99.8 3.2E-21 1.1E-25 124.4 6.5 62 2-63 14-75 (80)
30 2ecc_A Homeobox and leucine zi 99.8 9.6E-21 3.3E-25 119.4 8.4 58 7-64 5-62 (76)
31 2da4_A Hypothetical protein DK 99.8 5E-21 1.7E-25 123.4 6.9 62 2-63 5-70 (80)
32 2kt0_A Nanog, homeobox protein 99.8 4.7E-21 1.6E-25 124.7 6.9 62 2-63 19-80 (84)
33 2k40_A Homeobox expressed in E 99.8 3.6E-21 1.2E-25 119.9 5.9 61 5-65 1-61 (67)
34 1b8i_A Ultrabithorax, protein 99.8 4.5E-21 1.5E-25 123.8 6.5 61 3-63 18-78 (81)
35 3a03_A T-cell leukemia homeobo 99.8 1.4E-20 4.7E-25 113.1 7.6 54 10-63 2-55 (56)
36 1uhs_A HOP, homeodomain only p 99.8 2.2E-20 7.5E-25 118.0 8.8 59 6-64 2-61 (72)
37 2m0c_A Homeobox protein arista 99.8 1.3E-20 4.6E-25 120.0 7.7 63 2-64 6-68 (75)
38 3a02_A Homeobox protein arista 99.8 1E-20 3.6E-25 115.3 6.9 57 8-64 2-58 (60)
39 2hi3_A Homeodomain-only protei 99.8 2.5E-20 8.4E-25 118.0 8.8 61 5-65 2-63 (73)
40 1wi3_A DNA-binding protein SAT 99.8 1.9E-20 6.6E-25 113.6 7.6 57 3-59 5-62 (71)
41 2r5y_A Homeotic protein sex co 99.8 1.5E-20 5.1E-25 123.3 7.6 61 3-63 26-86 (88)
42 1b72_A Protein (homeobox prote 99.8 2.3E-20 8E-25 124.5 7.9 62 4-65 33-94 (97)
43 1wh7_A ZF-HD homeobox family p 99.8 6.6E-21 2.3E-25 122.3 4.5 58 3-61 15-77 (80)
44 1puf_B PRE-B-cell leukemia tra 99.8 5E-20 1.7E-24 116.6 7.5 62 5-66 1-65 (73)
45 2cuf_A FLJ21616 protein; homeo 99.8 7E-20 2.4E-24 121.7 8.3 65 2-66 4-83 (95)
46 1x2n_A Homeobox protein pknox1 99.8 1.2E-19 4.1E-24 114.9 8.9 62 3-64 5-69 (73)
47 2da5_A Zinc fingers and homeob 99.8 1.1E-19 3.7E-24 115.6 7.9 59 6-64 8-66 (75)
48 1b72_B Protein (PBX1); homeodo 99.8 1.3E-19 4.4E-24 118.6 8.0 63 6-68 2-67 (87)
49 2ly9_A Zinc fingers and homeob 99.8 1E-19 3.5E-24 115.5 7.3 61 4-64 5-65 (74)
50 1k61_A Mating-type protein alp 99.8 1.4E-19 4.8E-24 110.3 7.4 55 8-62 1-58 (60)
51 2da6_A Hepatocyte nuclear fact 99.8 4.4E-19 1.5E-23 117.6 10.3 67 2-68 3-90 (102)
52 2dmn_A Homeobox protein TGIF2L 99.8 1.8E-19 6.3E-24 116.7 8.3 65 3-67 5-72 (83)
53 1du6_A PBX1, homeobox protein 99.8 3.8E-20 1.3E-24 114.3 4.0 59 4-62 2-63 (64)
54 2dn0_A Zinc fingers and homeob 99.8 1E-19 3.5E-24 116.0 6.1 59 6-64 9-67 (76)
55 2ecb_A Zinc fingers and homeob 99.8 9.4E-20 3.2E-24 118.8 5.9 57 9-65 15-71 (89)
56 3nar_A ZHX1, zinc fingers and 99.8 1.8E-19 6E-24 120.0 7.2 62 3-64 23-84 (96)
57 1le8_B Mating-type protein alp 99.8 2.3E-19 7.7E-24 116.3 6.6 60 6-65 3-65 (83)
58 3nau_A Zinc fingers and homeob 99.8 4.4E-19 1.5E-23 108.0 7.4 53 12-64 11-63 (66)
59 1mnm_C Protein (MAT alpha-2 tr 99.8 5E-19 1.7E-23 115.7 8.2 58 4-61 26-86 (87)
60 2cqx_A LAG1 longevity assuranc 99.8 1E-19 3.6E-24 114.6 4.2 58 5-62 8-66 (72)
61 1au7_A Protein PIT-1, GHF-1; c 99.8 5.5E-19 1.9E-23 126.2 6.7 60 3-62 85-144 (146)
62 3d1n_I POU domain, class 6, tr 99.8 9.4E-19 3.2E-23 125.8 7.9 61 2-62 90-150 (151)
63 1lfb_A Liver transcription fac 99.8 5.5E-19 1.9E-23 117.6 6.0 63 2-64 6-89 (99)
64 2l9r_A Homeobox protein NKX-3. 99.8 2.6E-19 8.8E-24 111.5 3.9 55 10-64 9-63 (69)
65 2dmp_A Zinc fingers and homeob 99.8 1.5E-18 5.1E-23 113.8 7.7 58 8-65 16-73 (89)
66 1e3o_C Octamer-binding transcr 99.8 9.4E-19 3.2E-23 126.9 7.1 60 3-62 99-158 (160)
67 2xsd_C POU domain, class 3, tr 99.8 7.3E-19 2.5E-23 127.7 6.3 62 3-64 97-158 (164)
68 2e19_A Transcription factor 8; 99.8 1.6E-18 5.3E-23 106.6 6.0 54 9-62 7-60 (64)
69 3l1p_A POU domain, class 5, tr 99.7 3.4E-18 1.2E-22 123.3 6.9 61 3-63 94-154 (155)
70 1x2m_A LAG1 longevity assuranc 99.7 2.7E-18 9.2E-23 104.7 5.3 49 14-62 9-58 (64)
71 2d5v_A Hepatocyte nuclear fact 99.7 7E-18 2.4E-22 122.9 5.6 62 3-64 95-156 (164)
72 3k2a_A Homeobox protein MEIS2; 99.7 1.9E-17 6.3E-22 102.8 5.6 56 10-65 3-61 (67)
73 2da7_A Zinc finger homeobox pr 99.6 8.9E-16 3E-20 93.8 6.3 46 14-59 14-59 (71)
74 1ic8_A Hepatocyte nuclear fact 99.6 2.6E-16 8.9E-21 116.7 3.9 59 3-61 113-192 (194)
75 2lk2_A Homeobox protein TGIF1; 99.6 4.1E-15 1.4E-19 96.2 8.0 58 10-67 10-70 (89)
76 2h8r_A Hepatocyte nuclear fact 99.6 5.4E-15 1.9E-19 110.7 6.6 58 2-59 139-217 (221)
77 1mh3_A Maltose binding-A1 home 99.4 2.7E-13 9.4E-18 111.5 4.1 55 7-61 367-421 (421)
78 2nzz_A Penetratin conjugated G 98.7 7.4E-10 2.5E-14 59.4 -1.7 26 47-72 1-26 (37)
79 1b8i_A Ultrabithorax, protein 98.3 2.7E-07 9.2E-12 58.8 2.2 38 148-185 3-40 (81)
80 1b72_A Protein (homeobox prote 98.2 5E-08 1.7E-12 64.4 -2.6 71 41-111 2-95 (97)
81 2nzz_A Penetratin conjugated G 98.1 3.4E-07 1.1E-11 49.0 -0.7 20 93-112 2-21 (37)
82 3nau_A Zinc fingers and homeob 97.8 8.3E-07 2.8E-11 53.8 -1.8 52 57-108 9-62 (66)
83 2r5y_A Homeotic protein sex co 97.8 9.3E-06 3.2E-10 52.4 3.0 24 162-185 25-48 (88)
84 2ecb_A Zinc fingers and homeob 97.8 3.8E-06 1.3E-10 54.3 0.6 44 69-112 28-73 (89)
85 2kt0_A Nanog, homeobox protein 97.8 2.7E-05 9.2E-10 49.7 4.4 24 162-185 19-42 (84)
86 1wh7_A ZF-HD homeobox family p 97.7 2.3E-05 7.9E-10 49.6 3.6 24 161-185 13-36 (80)
87 1wh5_A ZF-HD homeobox family p 97.7 2.7E-05 9.2E-10 49.3 3.7 24 162-185 14-37 (80)
88 2dmp_A Zinc fingers and homeob 97.6 7.2E-06 2.5E-10 53.1 0.1 29 84-112 47-75 (89)
89 3a03_A T-cell leukemia homeobo 97.6 6.1E-06 2.1E-10 48.6 -0.2 25 84-108 31-55 (56)
90 2l9r_A Homeobox protein NKX-3. 97.6 4.7E-06 1.6E-10 51.2 -1.1 27 84-110 38-64 (69)
91 2ecc_A Homeobox and leucine zi 97.6 1.4E-05 5E-10 49.9 0.6 37 72-108 23-61 (76)
92 2dmt_A Homeobox protein BARH-l 97.5 6.8E-05 2.3E-09 47.4 3.7 24 162-185 14-37 (80)
93 1x2m_A LAG1 longevity assuranc 97.5 7E-06 2.4E-10 49.6 -1.2 29 80-108 31-59 (64)
94 2e19_A Transcription factor 8; 97.5 9.1E-06 3.1E-10 49.2 -0.7 40 68-107 19-60 (64)
95 2cuf_A FLJ21616 protein; homeo 97.5 1.6E-05 5.4E-10 52.0 0.2 24 89-112 61-84 (95)
96 1uhs_A HOP, homeodomain only p 97.5 1.7E-05 5.8E-10 49.1 0.3 27 84-110 36-62 (72)
97 2dmn_A Homeobox protein TGIF2L 97.5 1.5E-05 5.1E-10 50.8 -0.0 30 83-112 43-72 (83)
98 3a02_A Homeobox protein arista 97.5 9.9E-06 3.4E-10 48.3 -1.1 26 84-109 33-58 (60)
99 2cue_A Paired box protein PAX6 97.5 7.3E-05 2.5E-09 47.2 2.9 24 162-185 4-27 (80)
100 2da5_A Zinc fingers and homeob 97.5 1.2E-05 4.1E-10 50.3 -0.8 42 70-111 25-68 (75)
101 2dmu_A Homeobox protein goosec 97.4 7.3E-05 2.5E-09 45.9 2.7 24 162-185 4-27 (70)
102 2djn_A Homeobox protein DLX-5; 97.4 8.2E-05 2.8E-09 45.7 2.9 24 162-185 4-27 (70)
103 2hi3_A Homeodomain-only protei 97.4 2.1E-05 7E-10 48.9 -0.0 27 84-110 37-63 (73)
104 2k40_A Homeobox expressed in E 97.4 1.7E-05 6E-10 48.3 -0.5 29 84-112 35-63 (67)
105 2cqx_A LAG1 longevity assuranc 97.4 6.4E-06 2.2E-10 51.1 -2.7 25 84-108 43-67 (72)
106 2cra_A Homeobox protein HOX-B1 97.4 9.4E-05 3.2E-09 45.4 2.7 24 162-185 4-27 (70)
107 2da1_A Alpha-fetoprotein enhan 97.4 0.0001 3.4E-09 45.3 2.7 24 162-185 4-27 (70)
108 2h1k_A IPF-1, pancreatic and d 97.4 6.9E-05 2.4E-09 45.0 1.8 22 164-185 2-23 (63)
109 1nk2_P Homeobox protein VND; h 97.4 0.00011 3.8E-09 46.0 2.9 25 161-185 5-29 (77)
110 2da2_A Alpha-fetoprotein enhan 97.4 0.00011 3.7E-09 45.1 2.7 24 162-185 4-27 (70)
111 2da4_A Hypothetical protein DK 97.3 0.00013 4.5E-09 46.0 3.0 24 162-185 5-28 (80)
112 1b72_B Protein (PBX1); homeodo 97.3 3.3E-05 1.1E-09 49.6 0.0 30 84-113 38-67 (87)
113 2dmq_A LIM/homeobox protein LH 97.3 0.00014 4.6E-09 45.9 2.7 24 162-185 4-27 (80)
114 2vi6_A Homeobox protein nanog; 97.3 8.8E-05 3E-09 44.4 1.6 22 164-185 2-23 (62)
115 2dms_A Homeobox protein OTX2; 97.3 0.00015 5E-09 45.8 2.7 24 162-185 4-27 (80)
116 1yz8_P Pituitary homeobox 2; D 97.2 0.00017 5.9E-09 44.0 2.6 22 164-185 2-23 (68)
117 3a01_A Homeodomain-containing 97.2 0.00029 9.8E-09 45.8 3.5 24 162-185 14-37 (93)
118 2da3_A Alpha-fetoprotein enhan 97.2 0.00019 6.7E-09 45.1 2.6 24 162-185 14-37 (80)
119 2e1o_A Homeobox protein PRH; D 97.2 0.00021 7E-09 43.9 2.7 24 162-185 4-27 (70)
120 1puf_A HOX-1.7, homeobox prote 97.2 0.00025 8.4E-09 44.4 3.0 24 162-185 10-33 (77)
121 1le8_B Mating-type protein alp 97.2 4.8E-05 1.6E-09 48.4 -0.5 27 84-110 39-65 (83)
122 2m0c_A Homeobox protein arista 97.1 0.00026 8.9E-09 43.9 2.9 24 162-185 6-29 (75)
123 1k61_A Mating-type protein alp 97.1 4.7E-05 1.6E-09 45.3 -0.7 25 84-108 35-59 (60)
124 1zq3_P PRD-4, homeotic bicoid 97.1 0.00025 8.6E-09 43.2 2.4 21 165-185 2-22 (68)
125 1ahd_P Antennapedia protein mu 97.0 0.00025 8.7E-09 43.2 2.1 21 165-185 2-22 (68)
126 2l7z_A Homeobox protein HOX-A1 97.0 0.00035 1.2E-08 43.2 2.6 23 163-185 5-27 (73)
127 1puf_B PRE-B-cell leukemia tra 97.0 0.00011 3.7E-09 45.5 0.2 28 84-111 38-65 (73)
128 2hdd_A Protein (engrailed home 97.0 0.00025 8.7E-09 42.2 1.6 22 164-185 2-23 (61)
129 1bw5_A ISL-1HD, insulin gene e 97.0 0.00039 1.3E-08 42.0 2.3 22 164-185 2-23 (66)
130 3rkq_A Homeobox protein NKX-2. 96.9 0.00048 1.7E-08 40.3 2.4 21 165-185 2-22 (58)
131 2da6_A Hepatocyte nuclear fact 96.9 0.00023 7.9E-09 46.9 1.0 23 90-112 67-89 (102)
132 1wi3_A DNA-binding protein SAT 96.9 0.0005 1.7E-08 41.6 2.3 24 162-185 4-27 (71)
133 1ig7_A Homeotic protein MSX-1; 96.9 0.0004 1.4E-08 40.8 1.9 20 166-185 1-20 (58)
134 3nar_A ZHX1, zinc fingers and 96.9 0.00035 1.2E-08 45.6 1.8 24 162-185 22-45 (96)
135 1fjl_A Paired protein; DNA-bin 96.9 0.00044 1.5E-08 43.6 2.2 24 162-185 15-38 (81)
136 1jgg_A Segmentation protein EV 96.8 0.00045 1.5E-08 40.9 1.8 20 166-185 2-21 (60)
137 1ftt_A TTF-1 HD, thyroid trans 96.8 0.00054 1.8E-08 41.7 2.1 21 165-185 2-22 (68)
138 3k2a_A Homeobox protein MEIS2; 96.7 0.00014 4.7E-09 44.3 -1.4 26 84-109 35-60 (67)
139 1akh_A Protein (mating-type pr 96.7 0.00059 2E-08 40.5 1.4 23 163-185 3-25 (61)
140 2dn0_A Zinc fingers and homeob 96.6 0.0012 4.2E-08 41.0 2.8 22 164-185 7-28 (76)
141 2ys9_A Homeobox and leucine zi 96.5 0.0048 1.6E-07 37.4 4.8 40 15-54 16-55 (70)
142 1lfb_A Liver transcription fac 96.5 0.00018 6.3E-09 47.3 -1.7 20 89-108 69-88 (99)
143 2ly9_A Zinc fingers and homeob 96.3 0.0018 6.3E-08 39.9 2.2 22 164-185 5-26 (74)
144 1ic8_A Hepatocyte nuclear fact 96.3 0.0014 4.8E-08 48.3 1.7 24 162-185 112-135 (194)
145 1au7_A Protein PIT-1, GHF-1; c 96.2 0.0016 5.5E-08 45.8 1.8 24 162-185 84-107 (146)
146 1x2n_A Homeobox protein pknox1 96.2 0.0033 1.1E-07 38.6 2.9 24 162-185 4-27 (73)
147 2lk2_A Homeobox protein TGIF1; 96.1 0.00057 2E-08 43.8 -1.0 30 83-112 41-70 (89)
148 1e3o_C Octamer-binding transcr 96.1 0.0022 7.4E-08 45.8 1.7 23 163-185 99-121 (160)
149 3d1n_I POU domain, class 6, tr 95.9 0.004 1.4E-07 43.9 2.7 23 163-185 91-113 (151)
150 2xsd_C POU domain, class 3, tr 95.7 0.0038 1.3E-07 44.7 1.6 24 162-185 96-119 (164)
151 2d5v_A Hepatocyte nuclear fact 95.6 0.0043 1.5E-07 44.4 1.7 24 162-185 94-117 (164)
152 1mnm_C Protein (MAT alpha-2 tr 95.5 0.0059 2E-07 38.9 2.0 23 163-185 25-47 (87)
153 2da7_A Zinc finger homeobox pr 95.4 0.0013 4.4E-08 40.1 -1.5 22 83-104 38-59 (71)
154 2h8r_A Hepatocyte nuclear fact 95.3 0.0075 2.6E-07 45.1 2.1 24 162-185 139-162 (221)
155 3l1p_A POU domain, class 5, tr 95.1 0.011 3.7E-07 41.9 2.4 23 163-185 94-116 (155)
156 1du6_A PBX1, homeobox protein 95.0 0.01 3.5E-07 35.3 1.9 21 164-184 2-22 (64)
157 1mh3_A Maltose binding-A1 home 94.7 0.0028 9.5E-08 51.5 -1.7 39 68-106 381-421 (421)
158 2glo_A Brinker CG9653-PA; prot 91.2 0.52 1.8E-05 27.1 5.0 45 9-54 3-47 (59)
159 2elh_A CG11849-PA, LD40883P; s 90.7 0.84 2.9E-05 28.5 6.0 46 4-54 15-60 (87)
160 1hlv_A CENP-B, major centromer 88.8 1.6 5.6E-05 29.0 6.8 50 7-59 3-52 (131)
161 3hug_A RNA polymerase sigma fa 82.1 6.2 0.00021 24.4 6.6 49 11-64 37-85 (92)
162 1tc3_C Protein (TC3 transposas 80.2 4.7 0.00016 21.1 5.5 40 10-54 4-43 (51)
163 1p4w_A RCSB; solution structur 78.0 5.8 0.0002 25.3 5.4 45 9-59 32-76 (99)
164 1jko_C HIN recombinase, DNA-in 75.3 1.5 5.3E-05 23.6 1.8 40 11-55 5-44 (52)
165 2jn6_A Protein CGL2762, transp 74.7 9.1 0.00031 23.9 5.7 42 9-54 3-45 (97)
166 3c57_A Two component transcrip 73.3 9.2 0.00031 23.9 5.4 43 11-59 27-69 (95)
167 2o8x_A Probable RNA polymerase 73.1 6.9 0.00024 22.5 4.6 46 11-61 15-60 (70)
168 1fse_A GERE; helix-turn-helix 69.7 12 0.00041 21.6 5.2 45 9-59 9-53 (74)
169 2rn7_A IS629 ORFA; helix, all 69.0 12 0.00041 23.8 5.4 46 9-54 4-52 (108)
170 2lv7_A Calcium-binding protein 68.5 11 0.00038 23.7 5.1 47 8-54 26-79 (100)
171 3mzy_A RNA polymerase sigma-H 68.1 16 0.00056 24.4 6.3 48 12-65 110-157 (164)
172 2p7v_B Sigma-70, RNA polymeras 65.5 9 0.00031 22.1 3.9 46 11-57 5-50 (68)
173 1je8_A Nitrate/nitrite respons 63.9 11 0.00038 22.8 4.2 43 11-59 21-63 (82)
174 3i5g_B Myosin regulatory light 63.7 15 0.00052 24.9 5.4 40 7-46 5-49 (153)
175 1fi6_A EH domain protein REPS1 62.4 16 0.00053 22.4 4.8 43 11-53 2-49 (92)
176 2pmy_A RAS and EF-hand domain- 61.2 11 0.00036 23.0 3.8 45 10-54 19-68 (91)
177 1s7o_A Hypothetical UPF0122 pr 60.9 31 0.0011 22.4 6.7 48 11-63 22-69 (113)
178 1ku3_A Sigma factor SIGA; heli 60.4 23 0.00077 20.6 5.8 49 11-60 10-58 (73)
179 1x3u_A Transcriptional regulat 59.7 16 0.00055 21.4 4.4 42 12-59 17-58 (79)
180 2x48_A CAG38821; archeal virus 57.6 15 0.00052 20.0 3.7 36 14-54 18-53 (55)
181 1c07_A Protein (epidermal grow 56.8 17 0.00058 22.4 4.3 42 12-53 4-50 (95)
182 2rgt_A Fusion of LIM/homeobox 56.0 0.47 1.6E-05 33.6 -3.8 23 163-185 134-156 (169)
183 1rp3_A RNA polymerase sigma fa 56.0 21 0.00073 25.6 5.3 48 11-63 187-234 (239)
184 1iuf_A Centromere ABP1 protein 55.1 20 0.00068 24.3 4.7 50 6-55 6-59 (144)
185 1xsv_A Hypothetical UPF0122 pr 53.4 42 0.0015 21.6 6.6 48 11-63 25-72 (113)
186 1u78_A TC3 transposase, transp 53.3 30 0.001 22.6 5.4 41 10-55 5-45 (141)
187 3bd1_A CRO protein; transcript 52.6 9.5 0.00033 22.6 2.4 23 35-57 14-36 (79)
188 1tty_A Sigma-A, RNA polymerase 52.4 37 0.0012 20.6 5.2 49 11-60 18-66 (87)
189 2rnj_A Response regulator prot 51.3 38 0.0013 20.6 5.2 43 11-59 29-71 (91)
190 2jpc_A SSRB; DNA binding prote 50.2 20 0.00068 19.8 3.5 24 36-59 17-40 (61)
191 2q24_A Putative TETR family tr 49.4 9.3 0.00032 26.5 2.3 41 17-59 21-61 (194)
192 3ulq_B Transcriptional regulat 49.2 44 0.0015 20.6 5.4 42 9-56 27-68 (90)
193 2xi8_A Putative transcription 49.0 8.9 0.0003 21.4 1.8 23 35-57 17-39 (66)
194 1or7_A Sigma-24, RNA polymeras 48.7 42 0.0014 23.1 5.8 47 12-63 141-187 (194)
195 2r1j_L Repressor protein C2; p 47.3 10 0.00035 21.3 1.9 23 35-57 21-43 (68)
196 2hin_A GP39, repressor protein 47.1 18 0.00062 21.6 3.0 22 35-56 13-34 (71)
197 2q0o_A Probable transcriptiona 47.0 37 0.0013 24.7 5.4 44 10-59 174-217 (236)
198 3fmy_A HTH-type transcriptiona 45.2 39 0.0013 19.6 4.4 41 10-57 9-49 (73)
199 1zug_A Phage 434 CRO protein; 44.9 11 0.00037 21.4 1.8 23 35-57 19-41 (71)
200 2lhi_A Calmodulin, serine/thre 44.4 20 0.00068 24.9 3.4 43 9-51 2-51 (176)
201 3bs3_A Putative DNA-binding pr 44.1 12 0.00042 21.6 1.9 23 35-57 26-48 (76)
202 1j9i_A GPNU1 DBD;, terminase s 43.1 19 0.00065 20.8 2.6 20 35-54 5-24 (68)
203 3omt_A Uncharacterized protein 43.0 18 0.00061 20.8 2.5 22 35-56 24-45 (73)
204 1adr_A P22 C2 repressor; trans 42.0 13 0.00046 21.4 1.9 24 34-57 20-43 (76)
205 1pdn_C Protein (PRD paired); p 41.8 54 0.0018 20.7 5.1 41 10-55 16-56 (128)
206 3t72_q RNA polymerase sigma fa 40.9 67 0.0023 20.3 6.1 51 11-62 19-69 (99)
207 2b5a_A C.BCLI; helix-turn-heli 40.8 15 0.0005 21.3 1.9 24 34-57 25-48 (77)
208 2ktg_A Calmodulin, putative; e 40.6 52 0.0018 19.0 4.6 46 9-54 5-57 (85)
209 1r69_A Repressor protein CI; g 39.9 15 0.00051 20.7 1.8 23 35-57 17-39 (69)
210 1j7q_A CAVP, calcium vector pr 39.5 56 0.0019 19.0 5.1 45 9-53 5-59 (86)
211 3kz3_A Repressor protein CI; f 39.4 16 0.00056 21.6 2.0 24 35-58 28-51 (80)
212 2opo_A Polcalcin CHE A 3; calc 38.3 54 0.0018 19.0 4.3 44 10-53 3-52 (86)
213 1y7y_A C.AHDI; helix-turn-heli 38.1 17 0.00058 20.8 1.9 23 34-56 28-50 (74)
214 2wiu_B HTH-type transcriptiona 38.1 23 0.00078 21.1 2.5 24 34-57 27-50 (88)
215 1rzs_A Antirepressor, regulato 37.7 16 0.00053 20.8 1.6 20 34-53 12-31 (61)
216 2a6c_A Helix-turn-helix motif; 37.6 19 0.00066 21.5 2.1 24 34-57 33-56 (83)
217 2hxi_A Putative transcriptiona 37.2 27 0.00092 25.6 3.3 53 8-61 25-78 (241)
218 2kpj_A SOS-response transcript 37.1 17 0.00058 22.3 1.8 24 34-57 24-47 (94)
219 3u0k_A Rcamp; fluorescent prot 36.5 64 0.0022 26.5 5.5 45 9-53 293-344 (440)
220 3i5g_C Myosin catalytic light 36.4 38 0.0013 23.0 3.7 36 11-46 2-44 (159)
221 3lsg_A Two-component response 36.1 43 0.0015 20.7 3.7 25 32-56 19-43 (103)
222 3b7h_A Prophage LP1 protein 11 36.0 18 0.00061 21.0 1.7 23 35-57 23-45 (78)
223 2qwt_A Transcriptional regulat 35.4 24 0.00082 24.4 2.6 38 20-59 22-59 (196)
224 2ict_A Antitoxin HIGA; helix-t 35.2 23 0.00079 21.6 2.2 24 34-57 23-46 (94)
225 2jml_A DNA binding domain/tran 34.5 21 0.00071 21.5 1.9 19 35-53 8-26 (81)
226 1aih_A HP1 integrase; DNA inte 34.0 1E+02 0.0036 20.5 6.2 44 7-50 2-45 (170)
227 2jrt_A Uncharacterized protein 34.0 85 0.0029 19.7 4.8 41 9-54 30-71 (95)
228 2joj_A Centrin protein; N-term 33.8 61 0.0021 18.2 4.0 42 12-53 1-49 (77)
229 3c3w_A Two component transcrip 33.4 64 0.0022 22.9 4.8 44 10-59 148-191 (225)
230 2ao9_A Phage protein; structur 33.0 40 0.0014 23.5 3.3 48 9-56 21-72 (155)
231 2v79_A DNA replication protein 32.9 90 0.0031 20.8 5.1 40 12-54 30-73 (135)
232 2ef8_A C.ECOT38IS, putative tr 32.5 24 0.00081 20.7 1.9 23 35-57 26-48 (84)
233 2k9q_A Uncharacterized protein 32.2 22 0.00074 20.8 1.7 23 35-57 18-40 (77)
234 3fia_A Intersectin-1; EH 1 dom 32.2 75 0.0026 21.0 4.5 43 10-52 25-72 (121)
235 2kgr_A Intersectin-1; structur 31.6 83 0.0028 19.8 4.6 43 11-53 7-54 (111)
236 3f6w_A XRE-family like protein 31.2 25 0.00085 20.7 1.9 24 34-57 29-52 (83)
237 1avs_A Troponin C; muscle cont 31.1 82 0.0028 18.4 5.0 43 11-53 13-62 (90)
238 3qrx_A Centrin; calcium-bindin 30.7 1.1E+02 0.0039 20.0 5.6 48 6-53 16-70 (169)
239 1eh2_A EPS15; calcium binding, 30.6 1E+02 0.0035 19.4 5.8 43 11-53 8-54 (106)
240 1l3l_A Transcriptional activat 29.9 1.1E+02 0.0039 22.0 5.7 45 9-59 171-215 (234)
241 3i9v_2 NADH-quinone oxidoreduc 29.9 66 0.0023 22.8 4.2 36 15-50 26-61 (181)
242 3o9x_A Uncharacterized HTH-typ 29.9 43 0.0015 21.9 3.0 39 12-57 71-109 (133)
243 1dtl_A Cardiac troponin C; hel 29.7 1.2E+02 0.004 19.7 5.7 45 10-54 10-62 (161)
244 1lmb_3 Protein (lambda repress 29.1 28 0.00096 20.9 1.9 24 34-57 32-55 (92)
245 2hku_A A putative transcriptio 28.9 28 0.00094 24.4 2.0 38 20-59 29-66 (215)
246 1x57_A Endothelial differentia 28.4 34 0.0012 20.6 2.1 24 34-57 28-51 (91)
247 3t76_A VANU, transcriptional r 28.3 39 0.0013 20.7 2.4 24 34-57 39-62 (88)
248 2lfw_A PHYR sigma-like domain; 28.0 48 0.0017 22.3 3.1 46 11-61 93-138 (157)
249 2pij_A Prophage PFL 6 CRO; tra 27.6 36 0.0012 19.1 2.0 19 35-53 16-34 (67)
250 3qq6_A HTH-type transcriptiona 27.6 44 0.0015 19.6 2.5 22 34-55 25-46 (78)
251 3s8q_A R-M controller protein; 27.5 31 0.0011 20.2 1.8 23 34-56 26-48 (82)
252 2gqb_A Conserved hypothetical 27.1 1E+02 0.0035 20.6 4.3 28 28-55 79-111 (130)
253 2ewt_A BLDD, putative DNA-bind 27.1 41 0.0014 18.9 2.3 24 34-57 23-48 (71)
254 2q1z_A RPOE, ECF SIGE; ECF sig 27.0 71 0.0024 21.7 3.9 26 36-61 155-180 (184)
255 2pjp_A Selenocysteine-specific 26.4 83 0.0028 20.3 3.9 41 13-54 2-42 (121)
256 2rek_A Putative TETR-family tr 26.2 23 0.00079 24.4 1.2 39 19-59 24-62 (199)
257 1a04_A Nitrate/nitrite respons 26.0 1.3E+02 0.0043 20.9 5.2 43 11-59 154-196 (215)
258 3mn2_A Probable ARAC family tr 25.9 94 0.0032 19.2 4.1 24 33-56 19-42 (108)
259 1qgp_A Protein (double strande 25.7 30 0.001 20.8 1.4 32 22-53 21-52 (77)
260 1t33_A Putative transcriptiona 25.1 34 0.0012 23.9 2.0 39 20-60 21-59 (224)
261 1zs4_A Regulatory protein CII; 24.6 50 0.0017 20.4 2.3 21 35-55 27-47 (83)
262 3oio_A Transcriptional regulat 24.5 1.1E+02 0.0038 19.1 4.2 29 28-56 19-47 (113)
263 3op9_A PLI0006 protein; struct 24.4 43 0.0015 21.1 2.2 24 34-57 24-47 (114)
264 1xwr_A Regulatory protein CII; 24.2 42 0.0014 21.3 2.0 22 33-54 24-45 (97)
265 2ovk_B RLC, myosin regulatory 24.2 1.5E+02 0.005 19.1 5.6 47 8-54 6-59 (153)
266 3jsj_A Putative TETR-family tr 24.1 40 0.0014 22.8 2.1 42 17-60 15-56 (190)
267 2ppx_A AGR_C_3184P, uncharacte 23.8 41 0.0014 20.7 1.9 23 35-57 46-68 (99)
268 2jt1_A PEFI protein; solution 23.6 61 0.0021 19.5 2.6 24 28-53 22-45 (77)
269 2ofy_A Putative XRE-family tra 23.2 41 0.0014 19.9 1.8 24 34-57 29-52 (86)
270 1uxc_A FRUR (1-57), fructose r 23.2 68 0.0023 18.4 2.7 23 35-57 3-25 (65)
271 3clo_A Transcriptional regulat 23.1 1.5E+02 0.0052 21.7 5.3 46 10-61 196-241 (258)
272 3g1o_A Transcriptional regulat 23.0 50 0.0017 23.8 2.6 40 19-59 51-90 (255)
273 3qp6_A CVIR transcriptional re 23.0 1.2E+02 0.0042 22.5 4.8 44 10-59 196-239 (265)
274 2l49_A C protein; P2 bacteriop 22.9 35 0.0012 20.8 1.4 23 35-57 20-42 (99)
275 3lph_A Protein REV; helix-loop 22.7 79 0.0027 18.8 2.8 34 19-66 20-53 (72)
276 1r8d_A Transcription activator 22.6 49 0.0017 21.0 2.2 19 35-53 5-23 (109)
277 2mys_B Myosin; muscle protein, 22.5 1.7E+02 0.0057 19.1 6.0 45 11-55 18-70 (166)
278 2vz4_A Tipal, HTH-type transcr 22.5 50 0.0017 21.0 2.2 19 35-53 4-22 (108)
279 3mlf_A Transcriptional regulat 21.8 52 0.0018 20.9 2.2 24 34-57 38-61 (111)
280 4h62_V Mediator of RNA polymer 21.8 41 0.0014 15.9 1.2 13 169-181 6-18 (31)
281 3fiw_A Putative TETR-family tr 21.7 24 0.00083 25.2 0.6 58 6-64 19-77 (211)
282 3eus_A DNA-binding protein; st 21.6 51 0.0018 19.7 2.0 24 34-57 29-52 (86)
283 3gzi_A Transcriptional regulat 21.3 51 0.0017 22.8 2.2 37 22-59 28-64 (218)
284 3j04_B Myosin regulatory light 21.2 1.6E+02 0.0055 18.5 5.3 42 12-53 1-49 (143)
285 3mkl_A HTH-type transcriptiona 21.2 58 0.002 20.8 2.3 24 32-55 23-46 (120)
286 3lfp_A CSP231I C protein; tran 20.6 63 0.0022 19.7 2.3 24 34-57 16-43 (98)
287 3kz9_A SMCR; transcriptional r 20.5 56 0.0019 22.2 2.3 37 22-59 28-64 (206)
288 3k2z_A LEXA repressor; winged 20.5 1.3E+02 0.0043 21.2 4.2 41 11-53 2-45 (196)
289 3oou_A LIN2118 protein; protei 20.4 72 0.0025 19.8 2.6 24 33-56 22-45 (108)
290 3fwb_A Cell division control p 20.3 1.8E+02 0.0062 18.6 6.3 46 8-53 13-65 (161)
291 2v57_A TETR family transcripti 20.2 47 0.0016 22.4 1.8 35 22-59 25-59 (190)
292 3g5g_A Regulatory protein; tra 20.2 52 0.0018 20.4 1.9 24 34-57 43-66 (99)
293 2kn2_A Calmodulin; S MAPK phos 20.2 1.4E+02 0.0048 17.3 4.7 42 12-53 3-51 (92)
294 2hxo_A Putative TETR-family tr 20.1 34 0.0012 24.9 1.1 56 6-62 10-66 (237)
295 3ivp_A Putative transposon-rel 20.0 54 0.0018 21.1 2.0 24 34-57 27-50 (126)
No 1
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=1.7e-21 Score=125.57 Aligned_cols=68 Identities=32% Similarity=0.573 Sum_probs=62.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHHHhhhhh
Q psy8536 3 RTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLKKREEV 70 (186)
Q Consensus 3 ~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~~~~~~~ 70 (186)
.+.+|.|+.||.+|+.+||..|..++||+..++.+||..+||++.+|++||||||+++++........
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~~~ 72 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQR 72 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhhcc
Confidence 56788999999999999999999999999999999999999999999999999999999987665543
No 2
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.86 E-value=1.5e-21 Score=124.96 Aligned_cols=66 Identities=36% Similarity=0.659 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHHHhh
Q psy8536 2 TRTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLKKR 67 (186)
Q Consensus 2 ~~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~~~~ 67 (186)
+++.++.|+.||..|+.+||..|..++||+..++++||..+||++.+|++||||||+++++.....
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 467788899999999999999999999999999999999999999999999999999999876543
No 3
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=125.32 Aligned_cols=67 Identities=27% Similarity=0.479 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHHHhhh
Q psy8536 2 TRTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLKKRE 68 (186)
Q Consensus 2 ~~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~~~~~ 68 (186)
..+.+|.|+.||.+|+.+|+..|..++||+..+++.||..+||++.+|++||||||+++++......
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 70 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQE 70 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHHh
Confidence 3567889999999999999999999999999999999999999999999999999999999766543
No 4
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.86 E-value=1.5e-21 Score=120.23 Aligned_cols=60 Identities=50% Similarity=0.833 Sum_probs=55.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHH
Q psy8536 4 TKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63 (186)
Q Consensus 4 ~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~ 63 (186)
+.+|.|+.||..|+.+|+..|..++||+..++.+||..+||++.+|++||||+|+++++.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 467889999999999999999999999999999999999999999999999999999975
No 5
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.86 E-value=1.8e-21 Score=117.98 Aligned_cols=57 Identities=47% Similarity=0.807 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHH
Q psy8536 6 DKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERK 62 (186)
Q Consensus 6 rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~ 62 (186)
|+.|+.||.+|+.+|+..|..++||+..++.+||..+||++.+|++||||+|+++++
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999999999999999999999999999999999999986
No 6
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.86 E-value=1e-21 Score=120.17 Aligned_cols=58 Identities=45% Similarity=0.818 Sum_probs=53.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHH
Q psy8536 5 KDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERK 62 (186)
Q Consensus 5 ~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~ 62 (186)
.+|.|+.||.+|+.+||..|..++||+..++++||..+||++.+|++||||+|+++++
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5688999999999999999999999999999999999999999999999999999885
No 7
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.86 E-value=6.1e-22 Score=121.23 Aligned_cols=61 Identities=30% Similarity=0.487 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHH
Q psy8536 1 KTRTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKER 61 (186)
Q Consensus 1 ~~~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~ 61 (186)
|.++.++.|+.||.+|+.+|+.+|..++||+..++.+||..+||++.+|++||+|+|++++
T Consensus 1 kk~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 1 KKEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 5678889999999999999999999999999999999999999999999999999999864
No 8
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.86 E-value=1.5e-21 Score=129.24 Aligned_cols=71 Identities=38% Similarity=0.586 Sum_probs=62.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHHHhhhhhhc
Q psy8536 2 TRTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLKKREEVVI 72 (186)
Q Consensus 2 ~~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~~~~~~~~~ 72 (186)
+.+.++.|+.||.+|+.+||..|..++||+..++.+||..+||++.+|++||||||+++++..........
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~ 84 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAER 84 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-----
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999998766544433
No 9
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=126.23 Aligned_cols=62 Identities=40% Similarity=0.696 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHH
Q psy8536 2 TRTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63 (186)
Q Consensus 2 ~~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~ 63 (186)
.++.+|.|+.||.+|+.+||..|..++||+..++++||..|||++.+|++||||||+++++.
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 46778899999999999999999999999999999999999999999999999999999864
No 10
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.85 E-value=3e-21 Score=123.55 Aligned_cols=65 Identities=52% Similarity=0.774 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHHHh
Q psy8536 2 TRTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLKK 66 (186)
Q Consensus 2 ~~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~~~ 66 (186)
.++.++.|+.||..|+.+||..|..++||+..++++||..+||++.+|++||||||+++++....
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 35678899999999999999999999999999999999999999999999999999999987654
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.6e-21 Score=121.66 Aligned_cols=62 Identities=32% Similarity=0.594 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHH
Q psy8536 3 RTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQL 64 (186)
Q Consensus 3 ~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~ 64 (186)
.+.+|.|+.||.+|+.+||..|..++||+..++++||..+||++.+|++||||+|+++++..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 46788899999999999999999999999999999999999999999999999999999753
No 12
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=1.1e-21 Score=126.44 Aligned_cols=65 Identities=34% Similarity=0.514 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHHHh
Q psy8536 2 TRTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLKK 66 (186)
Q Consensus 2 ~~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~~~ 66 (186)
.++.+|.|+.||.+|+.+||..|..++||+..++++||..+||++.+|++||||||+++++....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 35778899999999999999999999999999999999999999999999999999999986543
No 13
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.85 E-value=5e-22 Score=121.97 Aligned_cols=60 Identities=40% Similarity=0.663 Sum_probs=52.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHH
Q psy8536 4 TKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63 (186)
Q Consensus 4 ~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~ 63 (186)
+.++.|+.||.+|+.+||..|..++||+..++.+||..+||++.+|++||||+|+++++.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 467889999999999999999999999999999999999999999999999999998863
No 14
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.85 E-value=1.2e-21 Score=123.15 Aligned_cols=62 Identities=42% Similarity=0.701 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHH
Q psy8536 2 TRTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63 (186)
Q Consensus 2 ~~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~ 63 (186)
..+.++.|+.||.+|+.+||..|..++||+..++++||..+||++.+|++||||||+++++.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKS 65 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhccc
Confidence 35678899999999999999999999999999999999999999999999999999998864
No 15
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.85 E-value=2.9e-21 Score=120.68 Aligned_cols=63 Identities=38% Similarity=0.637 Sum_probs=59.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHHHhh
Q psy8536 5 KDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLKKR 67 (186)
Q Consensus 5 ~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~~~~ 67 (186)
.++.|+.||.+|+.+|+..|..++||+..++..||..+||++.+|++||||||+++++.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 467899999999999999999999999999999999999999999999999999999876543
No 16
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.85 E-value=4.3e-21 Score=123.99 Aligned_cols=64 Identities=39% Similarity=0.642 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHHH
Q psy8536 2 TRTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLK 65 (186)
Q Consensus 2 ~~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~~ 65 (186)
.++.++.|+.||..|+.+|+..|..++||+..++..||..+||++.+|++||||||++++++..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 3567889999999999999999999999999999999999999999999999999999998764
No 17
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.85 E-value=2.8e-21 Score=121.50 Aligned_cols=62 Identities=31% Similarity=0.429 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHH
Q psy8536 2 TRTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63 (186)
Q Consensus 2 ~~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~ 63 (186)
..+.++.|+.||.+|+.+||..|..++||+..++++||..+||++.+|++||||+|+++++.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 45778899999999999999999999999999999999999999999999999999999864
No 18
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.85 E-value=2.8e-21 Score=120.71 Aligned_cols=61 Identities=56% Similarity=0.917 Sum_probs=57.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHHH
Q psy8536 5 KDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLK 65 (186)
Q Consensus 5 ~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~~ 65 (186)
++|.|+.||.+|+.+||..|..++||+..++.+||..+||++.+|++||||||+++++...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 4678999999999999999999999999999999999999999999999999999998653
No 19
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.85 E-value=4e-21 Score=117.16 Aligned_cols=58 Identities=43% Similarity=0.777 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHH
Q psy8536 6 DKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63 (186)
Q Consensus 6 rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~ 63 (186)
||.|+.||.+|+.+|+..|..++||+..++.+||..+||++.+|++||||+|++++++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999874
No 20
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.85 E-value=2.3e-21 Score=121.86 Aligned_cols=62 Identities=26% Similarity=0.386 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHH
Q psy8536 2 TRTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63 (186)
Q Consensus 2 ~~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~ 63 (186)
.++.++.|+.||.+|+.+|+..|..++||+..++.+||..+||++.+|++||||+|+++++.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 35678899999999999999999999999999999999999999999999999999999874
No 21
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.85 E-value=6.7e-21 Score=119.71 Aligned_cols=62 Identities=45% Similarity=0.664 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHH
Q psy8536 3 RTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQL 64 (186)
Q Consensus 3 ~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~ 64 (186)
.+.++.|++||.+|+.+||..|..++||+..++++||..+||++.+|++||||||+++++..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 45677899999999999999999999999999999999999999999999999999999754
No 22
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.84 E-value=3.8e-21 Score=121.78 Aligned_cols=62 Identities=44% Similarity=0.691 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHH
Q psy8536 3 RTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQL 64 (186)
Q Consensus 3 ~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~ 64 (186)
.+.++.|+.||.+|+.+||..|..++||+..++.+||..+||++.+|++||||||+++++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 56788999999999999999999999999999999999999999999999999999998753
No 23
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.84 E-value=5.8e-21 Score=119.31 Aligned_cols=61 Identities=41% Similarity=0.694 Sum_probs=57.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHHH
Q psy8536 5 KDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLK 65 (186)
Q Consensus 5 ~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~~ 65 (186)
+++.|+.||.+|+.+|+..|..++||+..++.+||..+||++.+|++||||+|+++++...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 5678999999999999999999999999999999999999999999999999999998654
No 24
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.84 E-value=2.6e-21 Score=120.25 Aligned_cols=60 Identities=28% Similarity=0.493 Sum_probs=56.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHH
Q psy8536 4 TKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63 (186)
Q Consensus 4 ~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~ 63 (186)
+.+|.|+.||.+|+.+|+..|..++||+..+++.||..+||++.+|++||||+|+++++.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 467889999999999999999999999999999999999999999999999999998764
No 25
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.84 E-value=1.7e-21 Score=121.75 Aligned_cols=63 Identities=35% Similarity=0.578 Sum_probs=59.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHHHh
Q psy8536 4 TKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLKK 66 (186)
Q Consensus 4 ~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~~~ 66 (186)
+.++.|+.||.+|+.+|+..|..++||+..++.+||..+||++.+|++||||+|+++++....
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 567889999999999999999999999999999999999999999999999999999986543
No 26
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.5e-21 Score=121.68 Aligned_cols=62 Identities=44% Similarity=0.731 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHH
Q psy8536 2 TRTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63 (186)
Q Consensus 2 ~~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~ 63 (186)
..+.++.|+.||.+|+.+||..|..++||+..++++||..+||++.+|++||||+|+++++.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 35678889999999999999999999999999999999999999999999999999998763
No 27
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.84 E-value=2.2e-21 Score=124.78 Aligned_cols=59 Identities=10% Similarity=0.223 Sum_probs=56.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHH
Q psy8536 3 RTKDKYRVVYSDQQRLELEKEFHY----SRYITIRRKAELANSLGLSERQVKIWFQNRRAKER 61 (186)
Q Consensus 3 ~~~rr~r~~~t~~q~~~L~~~f~~----~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~ 61 (186)
++.||.||.||.+|+.+|+..|.. ++||+..++++||..|||++.+|+|||||+|+|.+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~ 77 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGP 77 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSS
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCC
Confidence 567889999999999999999999 99999999999999999999999999999999865
No 28
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.84 E-value=7.3e-21 Score=115.25 Aligned_cols=57 Identities=46% Similarity=0.761 Sum_probs=54.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHH
Q psy8536 5 KDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKER 61 (186)
Q Consensus 5 ~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~ 61 (186)
+++.|+.||..|+.+|+..|..++||+..++++||..+||++.+|++||||+|+++|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467899999999999999999999999999999999999999999999999999874
No 29
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.84 E-value=3.2e-21 Score=124.37 Aligned_cols=62 Identities=29% Similarity=0.483 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHH
Q psy8536 2 TRTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63 (186)
Q Consensus 2 ~~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~ 63 (186)
.++.+|.|+.||.+|+.+|+..|..++||+..++++||..|||++.+|++||||||+++++.
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 45678899999999999999999999999999999999999999999999999999999874
No 30
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.84 E-value=9.6e-21 Score=119.40 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=54.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHH
Q psy8536 7 KYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQL 64 (186)
Q Consensus 7 r~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~ 64 (186)
..|..||.+|+.+|+..|..++||+..++++||..+||++.+|++||||+|+++|+..
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999998753
No 31
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=5e-21 Score=123.38 Aligned_cols=62 Identities=23% Similarity=0.309 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHH
Q psy8536 2 TRTKDKYRVVYSDQQRLELEKEFHYS----RYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63 (186)
Q Consensus 2 ~~~~rr~r~~~t~~q~~~L~~~f~~~----~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~ 63 (186)
.++.+|.|+.||.+|+.+|+.+|..+ +||+..++++||.++||++.+|++||||+|+++++.
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 35678889999999999999999999 999999999999999999999999999999999884
No 32
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.84 E-value=4.7e-21 Score=124.67 Aligned_cols=62 Identities=39% Similarity=0.631 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHH
Q psy8536 2 TRTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63 (186)
Q Consensus 2 ~~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~ 63 (186)
.++.+|.|+.||..|+.+||..|..++||+..++..||..+||++.+|++||||||+++++.
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 80 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW 80 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999998864
No 33
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.83 E-value=3.6e-21 Score=119.93 Aligned_cols=61 Identities=33% Similarity=0.512 Sum_probs=57.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHHH
Q psy8536 5 KDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLK 65 (186)
Q Consensus 5 ~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~~ 65 (186)
.||.|+.||.+|+.+|+..|..++||+..++..||..+||++.+|++||||+|+++++...
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 3678999999999999999999999999999999999999999999999999999987543
No 34
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.83 E-value=4.5e-21 Score=123.82 Aligned_cols=61 Identities=52% Similarity=0.847 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHH
Q psy8536 3 RTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63 (186)
Q Consensus 3 ~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~ 63 (186)
.+.+|.|+.||.+|+.+||..|..++||+..++++||..+||++.+|++||||||+++++.
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 4567889999999999999999999999999999999999999999999999999999875
No 35
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=113.11 Aligned_cols=54 Identities=44% Similarity=0.733 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHH
Q psy8536 10 VVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63 (186)
Q Consensus 10 ~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~ 63 (186)
|.||.+|+.+||..|..++||+..++.+||..+||++.+|++||||||++++++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 679999999999999999999999999999999999999999999999999975
No 36
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.83 E-value=2.2e-20 Score=117.98 Aligned_cols=59 Identities=24% Similarity=0.303 Sum_probs=56.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHH
Q psy8536 6 DKYRVVYSDQQRLELEKEFHY-SRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQL 64 (186)
Q Consensus 6 rr~r~~~t~~q~~~L~~~f~~-~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~ 64 (186)
.+.|+.||.+|+.+||..|.. ++||+..++++||..+||++.+|++||||||+++++..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 467899999999999999996 99999999999999999999999999999999999865
No 37
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=119.96 Aligned_cols=63 Identities=38% Similarity=0.572 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHH
Q psy8536 2 TRTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQL 64 (186)
Q Consensus 2 ~~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~ 64 (186)
.+++++.|+.||..|+.+|+..|..++||+..++++||..+||++.+|++||||+|+++++..
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 456778899999999999999999999999999999999999999999999999999998753
No 38
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.83 E-value=1e-20 Score=115.29 Aligned_cols=57 Identities=42% Similarity=0.660 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHH
Q psy8536 8 YRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQL 64 (186)
Q Consensus 8 ~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~ 64 (186)
.|+.||.+|+.+|+..|..++||+..++.+||..+||++.+|++||||||+++++..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 479999999999999999999999999999999999999999999999999998764
No 39
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.83 E-value=2.5e-20 Score=118.04 Aligned_cols=61 Identities=23% Similarity=0.249 Sum_probs=57.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHHH
Q psy8536 5 KDKYRVVYSDQQRLELEKEFHY-SRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLK 65 (186)
Q Consensus 5 ~rr~r~~~t~~q~~~L~~~f~~-~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~~ 65 (186)
.++.|+.||.+|+.+||..|.. ++||+..++++||..+||++.+|++||||||+++++...
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 3567899999999999999995 999999999999999999999999999999999998663
No 40
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=1.9e-20 Score=113.59 Aligned_cols=57 Identities=21% Similarity=0.197 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHH
Q psy8536 3 RTKDKYRVVYSDQQRLELEKEFHY-SRYITIRRKAELANSLGLSERQVKIWFQNRRAK 59 (186)
Q Consensus 3 ~~~rr~r~~~t~~q~~~L~~~f~~-~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~ 59 (186)
++.+|.||.|+.+|+.+|+.+|+. ++|||...|+.||.++||++++|++||||+|--
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~ 62 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYH 62 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceee
Confidence 567889999999999999999999 999999999999999999999999999999964
No 41
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.83 E-value=1.5e-20 Score=123.31 Aligned_cols=61 Identities=54% Similarity=0.911 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHH
Q psy8536 3 RTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63 (186)
Q Consensus 3 ~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~ 63 (186)
.+.+|.|+.||.+|+.+||..|..++||+..++++||..+||++.+|++||||||+++++.
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 4567889999999999999999999999999999999999999999999999999999874
No 42
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=2.3e-20 Score=124.52 Aligned_cols=62 Identities=45% Similarity=0.805 Sum_probs=56.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHHH
Q psy8536 4 TKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLK 65 (186)
Q Consensus 4 ~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~~ 65 (186)
+.++.|+.||.+|+.+||..|..++||+..++.+||..+||++.+|++||||||+++++...
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 45788999999999999999999999999999999999999999999999999999998764
No 43
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.82 E-value=6.6e-21 Score=122.32 Aligned_cols=58 Identities=16% Similarity=0.334 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHH
Q psy8536 3 RTKDKYRVVYSDQQRLELEKEFHY-----SRYITIRRKAELANSLGLSERQVKIWFQNRRAKER 61 (186)
Q Consensus 3 ~~~rr~r~~~t~~q~~~L~~~f~~-----~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~ 61 (186)
.++||.||.||.+|+.+|+ .|.. ++||+..++++||.+|||++.+|+|||||+|+|.+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~ 77 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGP 77 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCC
Confidence 5678889999999999999 7999 99999999999999999999999999999999865
No 44
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.81 E-value=5e-20 Score=116.64 Aligned_cols=62 Identities=29% Similarity=0.437 Sum_probs=57.8
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHHHh
Q psy8536 5 KDKYRVVYSDQQRLELEKEF---HYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLKK 66 (186)
Q Consensus 5 ~rr~r~~~t~~q~~~L~~~f---~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~~~ 66 (186)
.||+|+.||.+|+.+|+.+| ..++||+..++..||..+||++.+|++||+|+|+++++....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 36789999999999999999 899999999999999999999999999999999999876543
No 45
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=7e-20 Score=121.73 Aligned_cols=65 Identities=20% Similarity=0.353 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcC---------------CChhHHHHHHHhhHHHHHHHHHh
Q psy8536 2 TRTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLG---------------LSERQVKIWFQNRRAKERKQLKK 66 (186)
Q Consensus 2 ~~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~---------------l~~~~v~~WFqnrr~~~~~~~~~ 66 (186)
.++++|.|+.||..|+.+||..|..++||+..++++||..+| |++.+|++||||||+++++....
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 357788999999999999999999999999999999999999 99999999999999999987765
No 46
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=1.2e-19 Score=114.87 Aligned_cols=62 Identities=21% Similarity=0.213 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHH
Q psy8536 3 RTKDKYRVVYSDQQRLELEKEFHY---SRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQL 64 (186)
Q Consensus 3 ~~~rr~r~~~t~~q~~~L~~~f~~---~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~ 64 (186)
++.++.|+.|+.+|+.+|+.+|.. ++||+..++++||..+||++.+|++||+|+|+++++..
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 567788999999999999999976 99999999999999999999999999999999998753
No 47
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=115.59 Aligned_cols=59 Identities=19% Similarity=0.230 Sum_probs=55.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHH
Q psy8536 6 DKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQL 64 (186)
Q Consensus 6 rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~ 64 (186)
.++|+.||.+|+.+||..|..++||+..++.+||..+||++.+|++||||||+++++..
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 45678899999999999999999999999999999999999999999999999999754
No 48
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.80 E-value=1.3e-19 Score=118.60 Aligned_cols=63 Identities=29% Similarity=0.424 Sum_probs=58.2
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHHHhhh
Q psy8536 6 DKYRVVYSDQQRLELEKEF---HYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLKKRE 68 (186)
Q Consensus 6 rr~r~~~t~~q~~~L~~~f---~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~~~~~ 68 (186)
||+|+.|+.+|+.+|+.+| ..++||+..++++||..+||++.+|++||+|+|+++++......
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 67 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGGH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccccc
Confidence 6789999999999999999 89999999999999999999999999999999999998765443
No 49
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.80 E-value=1e-19 Score=115.53 Aligned_cols=61 Identities=20% Similarity=0.307 Sum_probs=57.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHH
Q psy8536 4 TKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQL 64 (186)
Q Consensus 4 ~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~ 64 (186)
..++.|+.||.+|+.+|+..|..++||+..++++||..+||++.+|++||||+|+++++..
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 3467899999999999999999999999999999999999999999999999999998753
No 50
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.80 E-value=1.4e-19 Score=110.27 Aligned_cols=55 Identities=27% Similarity=0.395 Sum_probs=52.9
Q ss_pred CCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHH
Q psy8536 8 YRVVYSDQQRLELEKEFHY---SRYITIRRKAELANSLGLSERQVKIWFQNRRAKERK 62 (186)
Q Consensus 8 ~r~~~t~~q~~~L~~~f~~---~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~ 62 (186)
+|+.||.+|+.+|+.+|.. ++||+..++++||..+||++.+|++||+|+|+++++
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 4689999999999999999 999999999999999999999999999999999885
No 51
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.4e-19 Score=117.63 Aligned_cols=67 Identities=18% Similarity=0.266 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHc---------------------CCChhHHHHHHHhhHHHH
Q psy8536 2 TRTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSL---------------------GLSERQVKIWFQNRRAKE 60 (186)
Q Consensus 2 ~~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~---------------------~l~~~~v~~WFqnrr~~~ 60 (186)
.+++||.|+.|+..|+.+|+..|..++||+..+|++||..+ +|++.+|++||||||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 56788999999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHhhh
Q psy8536 61 RKQLKKRE 68 (186)
Q Consensus 61 ~~~~~~~~ 68 (186)
++......
T Consensus 83 kr~~~~~~ 90 (102)
T 2da6_A 83 AFRQKLAM 90 (102)
T ss_dssp HHHHHHHH
T ss_pred HHhhHhhh
Confidence 98766543
No 52
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=116.65 Aligned_cols=65 Identities=18% Similarity=0.185 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHHHhh
Q psy8536 3 RTKDKYRVVYSDQQRLELEKEFHY---SRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLKKR 67 (186)
Q Consensus 3 ~~~rr~r~~~t~~q~~~L~~~f~~---~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~~~~ 67 (186)
.+++++|+.|+.+|+.+|+.+|.. ++||+..++++||..+||++.||++||+|+|++.++.....
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 456788999999999999999987 69999999999999999999999999999999998765543
No 53
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=3.8e-20 Score=114.27 Aligned_cols=59 Identities=27% Similarity=0.344 Sum_probs=55.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHH
Q psy8536 4 TKDKYRVVYSDQQRLELEKEF---HYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERK 62 (186)
Q Consensus 4 ~~rr~r~~~t~~q~~~L~~~f---~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~ 62 (186)
..++.|+.|+.+|+.+|+.+| ..++||+..++++||..+||++.+|++||+|+|+++++
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 457889999999999999999 89999999999999999999999999999999998764
No 54
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1e-19 Score=116.04 Aligned_cols=59 Identities=27% Similarity=0.402 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHH
Q psy8536 6 DKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQL 64 (186)
Q Consensus 6 rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~ 64 (186)
.+.|+.||.+|+.+||..|..++||+..++++||..+||++.+|++||||||+++++..
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 45689999999999999999999999999999999999999999999999999988743
No 55
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=9.4e-20 Score=118.77 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=53.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHHH
Q psy8536 9 RVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLK 65 (186)
Q Consensus 9 r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~~ 65 (186)
...||.+|+.+||..|..++||+..++++||..|||++.||+|||||||+++++...
T Consensus 15 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 15 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 348999999999999999999999999999999999999999999999999987544
No 56
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.79 E-value=1.8e-19 Score=119.99 Aligned_cols=62 Identities=16% Similarity=0.202 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHH
Q psy8536 3 RTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQL 64 (186)
Q Consensus 3 ~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~ 64 (186)
...+++|+.||..|+.+|+..|..++||+..++++||..+||++.+|++||||||+++|+..
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 34567899999999999999999999999999999999999999999999999999999754
No 57
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.78 E-value=2.3e-19 Score=116.32 Aligned_cols=60 Identities=25% Similarity=0.309 Sum_probs=54.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHHH
Q psy8536 6 DKYRVVYSDQQRLELEKEFHY---SRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLK 65 (186)
Q Consensus 6 rr~r~~~t~~q~~~L~~~f~~---~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~~ 65 (186)
+++|++|+.+|+.+|+.+|.. ++||+..++.+||..+||++.+|++||||+|+++++...
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 455677999999999999999 999999999999999999999999999999999987543
No 58
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.78 E-value=4.4e-19 Score=108.01 Aligned_cols=53 Identities=21% Similarity=0.380 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHH
Q psy8536 12 YSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQL 64 (186)
Q Consensus 12 ~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~ 64 (186)
-|.+|+.+|+..|..++||+..++.+||..+||++.+|++||||||+++++-.
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 37899999999999999999999999999999999999999999999998643
No 59
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.78 E-value=5e-19 Score=115.73 Aligned_cols=58 Identities=29% Similarity=0.391 Sum_probs=55.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHH
Q psy8536 4 TKDKYRVVYSDQQRLELEKEFHY---SRYITIRRKAELANSLGLSERQVKIWFQNRRAKER 61 (186)
Q Consensus 4 ~~rr~r~~~t~~q~~~L~~~f~~---~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~ 61 (186)
+++++|+.|+.+|+.+|+.+|.. ++||+..+++.||..+||++.+|++||+|+|+++|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 45667999999999999999999 99999999999999999999999999999999986
No 60
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.78 E-value=1e-19 Score=114.57 Aligned_cols=58 Identities=28% Similarity=0.430 Sum_probs=54.7
Q ss_pred CCCCCCCCCHHHHHHHHHHH-hhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHH
Q psy8536 5 KDKYRVVYSDQQRLELEKEF-HYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERK 62 (186)
Q Consensus 5 ~rr~r~~~t~~q~~~L~~~f-~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~ 62 (186)
..+.|.+++.+|+.+||..| ..++||+..++++||..+||++.+|++||||||+++++
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCC
Confidence 45677889999999999999 99999999999999999999999999999999999885
No 61
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.77 E-value=5.5e-19 Score=126.17 Aligned_cols=60 Identities=28% Similarity=0.449 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHH
Q psy8536 3 RTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERK 62 (186)
Q Consensus 3 ~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~ 62 (186)
+++||.|+.||..|+.+||..|..++||+..++.+||..+||++.+|++||||||+++|+
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 144 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 144 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhc
Confidence 567788999999999999999999999999999999999999999999999999999886
No 62
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.77 E-value=9.4e-19 Score=125.80 Aligned_cols=61 Identities=26% Similarity=0.397 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHH
Q psy8536 2 TRTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERK 62 (186)
Q Consensus 2 ~~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~ 62 (186)
..++||+|+.||..|+.+|+..|..++||+..++.+||..+||++.+|++||||||+++|+
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 3567889999999999999999999999999999999999999999999999999999875
No 63
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.76 E-value=5.5e-19 Score=117.62 Aligned_cols=63 Identities=22% Similarity=0.379 Sum_probs=53.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH------------------cC---CChhHHHHHHHhhHHHH
Q psy8536 2 TRTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANS------------------LG---LSERQVKIWFQNRRAKE 60 (186)
Q Consensus 2 ~~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~------------------~~---l~~~~v~~WFqnrr~~~ 60 (186)
.++.||.|+.|+..|+.+||..|..++||+..+|++||.. || |++.+|++||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 4677889999999999999999999999999999999999 88 99999999999999987
Q ss_pred HHHH
Q psy8536 61 RKQL 64 (186)
Q Consensus 61 ~~~~ 64 (186)
++..
T Consensus 86 k~k~ 89 (99)
T 1lfb_A 86 AFRH 89 (99)
T ss_dssp SCCC
T ss_pred HHhc
Confidence 6543
No 64
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.76 E-value=2.6e-19 Score=111.46 Aligned_cols=55 Identities=44% Similarity=0.717 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHH
Q psy8536 10 VVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQL 64 (186)
Q Consensus 10 ~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~ 64 (186)
..+|..|+.+||..|..++||+..++.+||..+||++.+|++||||||+++|+..
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 4689999999999999999999999999999999999999999999999988754
No 65
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=113.77 Aligned_cols=58 Identities=24% Similarity=0.240 Sum_probs=53.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHHH
Q psy8536 8 YRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLK 65 (186)
Q Consensus 8 ~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~~ 65 (186)
++..||.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+++...
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 3455999999999999999999999999999999999999999999999999886543
No 66
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.76 E-value=9.4e-19 Score=126.89 Aligned_cols=60 Identities=28% Similarity=0.496 Sum_probs=54.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHH
Q psy8536 3 RTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERK 62 (186)
Q Consensus 3 ~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~ 62 (186)
.++||.|+.||..|+.+||..|..++||+..++.+||..+||++.+|++||||||+++|+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 158 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 158 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhc
Confidence 467888999999999999999999999999999999999999999999999999999986
No 67
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.76 E-value=7.3e-19 Score=127.74 Aligned_cols=62 Identities=31% Similarity=0.393 Sum_probs=51.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHH
Q psy8536 3 RTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQL 64 (186)
Q Consensus 3 ~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~ 64 (186)
+++||+|+.||..|+.+||..|..++||+..++.+||..+||++.+|++||||||+|+|+..
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred ccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 56788899999999999999999999999999999999999999999999999999999754
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=106.63 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=50.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHH
Q psy8536 9 RVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERK 62 (186)
Q Consensus 9 r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~ 62 (186)
+...+.+|+.+||..|..++||+..++.+||..+||++.+|++||||||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 466789999999999999999999999999999999999999999999998654
No 69
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.73 E-value=3.4e-18 Score=123.25 Aligned_cols=61 Identities=30% Similarity=0.558 Sum_probs=57.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHH
Q psy8536 3 RTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63 (186)
Q Consensus 3 ~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~ 63 (186)
.++||.|+.|+..|+.+|+..|..++||+..++.+||..+||++.+|++||||||+++|+.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 3677889999999999999999999999999999999999999999999999999999863
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=2.7e-18 Score=104.73 Aligned_cols=49 Identities=29% Similarity=0.471 Sum_probs=45.9
Q ss_pred HHHHHHHHHHH-hhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHH
Q psy8536 14 DQQRLELEKEF-HYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERK 62 (186)
Q Consensus 14 ~~q~~~L~~~f-~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~ 62 (186)
..|+.+||..| ..++||+..++.+||..|||+++||++||||||+++|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 46899999999 67999999999999999999999999999999999874
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.71 E-value=7e-18 Score=122.91 Aligned_cols=62 Identities=26% Similarity=0.364 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHH
Q psy8536 3 RTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQL 64 (186)
Q Consensus 3 ~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~ 64 (186)
.+.||.|+.||.+|+.+|+..|..++||+..++++||..+||++.+|++||||||++.++..
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 35688899999999999999999999999999999999999999999999999999987643
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=1.9e-17 Score=102.84 Aligned_cols=56 Identities=21% Similarity=0.300 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHHHh---hcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHHH
Q psy8536 10 VVYSDQQRLELEKEFH---YSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLK 65 (186)
Q Consensus 10 ~~~t~~q~~~L~~~f~---~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~~ 65 (186)
..|+.+|+.+|+.+|. .++||+..++++||..+||++.||++||+|+|++.++...
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 4799999999999999 9999999999999999999999999999999999886543
No 73
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=8.9e-16 Score=93.82 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHH
Q psy8536 14 DQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAK 59 (186)
Q Consensus 14 ~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~ 59 (186)
++|+.+|+++|..|++|+..++..||..+||++++|++||||+|+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999974
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.61 E-value=2.6e-16 Score=116.68 Aligned_cols=59 Identities=19% Similarity=0.345 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcC---------------------CChhHHHHHHHhhHHHHH
Q psy8536 3 RTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLG---------------------LSERQVKIWFQNRRAKER 61 (186)
Q Consensus 3 ~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~---------------------l~~~~v~~WFqnrr~~~~ 61 (186)
++.||.|+.|+..|+.+|+..|..++||+...|++||..+| |++.+|++||||||++.+
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 57788999999999999999999999999999999999999 999999999999999865
No 75
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.59 E-value=4.1e-15 Score=96.17 Aligned_cols=58 Identities=22% Similarity=0.239 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHHHhh
Q psy8536 10 VVYSDQQRLELEKEFHY---SRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLKKR 67 (186)
Q Consensus 10 ~~~t~~q~~~L~~~f~~---~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~~~~ 67 (186)
..|+.+++.+|+.+|.. ++||+..++++||..+||++.||++||+|+|.+.++.....
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 46899999999999987 99999999999999999999999999999999998865544
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.55 E-value=5.4e-15 Score=110.73 Aligned_cols=58 Identities=17% Similarity=0.342 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcC---------------------CChhHHHHHHHhhHHH
Q psy8536 2 TRTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLG---------------------LSERQVKIWFQNRRAK 59 (186)
Q Consensus 2 ~~~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~---------------------l~~~~v~~WFqnrr~~ 59 (186)
.++.||.|+.|+..|+.+|+..|..++||+..+|++||..+| |++.+|++||+|||+.
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 467888999999999999999999999999999999999988 8999999999999975
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.36 E-value=2.7e-13 Score=111.48 Aligned_cols=55 Identities=29% Similarity=0.504 Sum_probs=51.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHH
Q psy8536 7 KYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKER 61 (186)
Q Consensus 7 r~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~ 61 (186)
+.++.++..|+..|+..|..++||+..+|++||.++||+++||++||||||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 3467899999999999999999999999999999999999999999999998753
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.68 E-value=7.4e-10 Score=59.38 Aligned_cols=26 Identities=50% Similarity=0.820 Sum_probs=21.1
Q ss_pred hHHHHHHHhhHHHHHHHHHhhhhhhc
Q psy8536 47 RQVKIWFQNRRAKERKQLKKREEVVI 72 (186)
Q Consensus 47 ~~v~~WFqnrr~~~~~~~~~~~~~~~ 72 (186)
+||+|||||||+|+|+.........+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~~~ 26 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARDII 26 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTTSS
T ss_pred CCceeccHHHHHHHHHHhHHHHHHHH
Confidence 48999999999999998877554443
No 79
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=98.28 E-value=2.7e-07 Score=58.82 Aligned_cols=38 Identities=34% Similarity=0.394 Sum_probs=20.4
Q ss_pred CCCCccccccccccCCCCCccccccchHHHHHHhhhhc
Q psy8536 148 TTATSYILDIDTRKTRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
++.+.++|+...+..+..++.||.||..|+.+||++|.
T Consensus 3 s~~~~~p~~~~~~~~~~~rr~Rt~ft~~Ql~~Le~~F~ 40 (81)
T 1b8i_A 3 SNHTFYPWMAIAGTNGLRRRGRQTYTRYQTLELEKEFH 40 (81)
T ss_dssp ----CCTTCC-----------CCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCccccCCCCCCCCCCCcccCHHHHHHHHHHHh
Confidence 34455666666666778899999999999999999995
No 80
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=98.21 E-value=5e-08 Score=64.44 Aligned_cols=71 Identities=24% Similarity=0.302 Sum_probs=35.6
Q ss_pred HcCCChhHHHHHHHhhHHHHHH---------------------HHHhhhhhhccCCCcccccchh--hhhhcccceeeee
Q psy8536 41 SLGLSERQVKIWFQNRRAKERK---------------------QLKKREEVVIKDPSKDLFLSNK--VMYTYLVFQVKIW 97 (186)
Q Consensus 41 ~~~l~~~~v~~WFqnrr~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~riq~W 97 (186)
++|++..+|..||++.|...+. +....+..+....+.+...... ...++...+|++|
T Consensus 2 ~~~~~~~~~~~W~~~~r~~~~~~~~~~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vW 81 (97)
T 1b72_A 2 EPNTPTARTFDWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIW 81 (97)
T ss_dssp ------CCCCGGGGC--------------------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHH
Confidence 4667778888899988765332 1122233343444433333322 3334445699999
Q ss_pred eeehhhhhhhhhhh
Q psy8536 98 FQNRRAKERKQLKK 111 (186)
Q Consensus 98 FqNrRak~~~~~~~ 111 (186)
|||+|+++++....
T Consensus 82 FqNRR~k~kk~~~~ 95 (97)
T 1b72_A 82 FQNRRMKQKKRERE 95 (97)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHhHHHhHHhcc
Confidence 99999999987643
No 81
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.07 E-value=3.4e-07 Score=48.98 Aligned_cols=20 Identities=55% Similarity=0.911 Sum_probs=17.8
Q ss_pred eeeeeeeehhhhhhhhhhhc
Q psy8536 93 QVKIWFQNRRAKERKQLKKR 112 (186)
Q Consensus 93 riq~WFqNrRak~~~~~~~~ 112 (186)
+|.||||||||++++.....
T Consensus 2 QVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 2 QIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CTTTTTTCSHHHHTSSHHHH
T ss_pred CceeccHHHHHHHHHHhHHH
Confidence 68999999999999987764
No 82
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=97.85 E-value=8.3e-07 Score=53.78 Aligned_cols=52 Identities=15% Similarity=0.248 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhhhhhccCCCcccccchh--hhhhcccceeeeeeeehhhhhhhh
Q psy8536 57 RAKERKQLKKREEVVIKDPSKDLFLSNK--VMYTYLVFQVKIWFQNRRAKERKQ 108 (186)
Q Consensus 57 r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~riq~WFqNrRak~~~~ 108 (186)
|.+.+.+....+..+....+.+...... ...++...+|++||||+|+++++.
T Consensus 9 ~~~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 9 RKKTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp --CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 4445556666666666666666655544 444555679999999999998753
No 83
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=97.85 E-value=9.3e-06 Score=52.39 Aligned_cols=24 Identities=46% Similarity=0.688 Sum_probs=17.4
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
.+..++.||.||..|+.+||++|+
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~ 48 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFH 48 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHh
Confidence 456788899999999999999996
No 84
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.80 E-value=3.8e-06 Score=54.30 Aligned_cols=44 Identities=9% Similarity=0.128 Sum_probs=27.8
Q ss_pred hhhccCCCcccccch--hhhhhcccceeeeeeeehhhhhhhhhhhc
Q psy8536 69 EVVIKDPSKDLFLSN--KVMYTYLVFQVKIWFQNRRAKERKQLKKR 112 (186)
Q Consensus 69 ~~~~~~~~~~~~~~~--~~~~~~~~~riq~WFqNrRak~~~~~~~~ 112 (186)
..+....+.+..... ....++...+|+|||||||+++++.....
T Consensus 28 ~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~ 73 (89)
T 2ecb_A 28 ASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKM 73 (89)
T ss_dssp HHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCC
T ss_pred HHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHh
Confidence 333334444433333 34445556799999999999998865543
No 85
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=97.78 E-value=2.7e-05 Score=49.68 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.6
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
.+..++.||.||..|+.+||++|+
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~ 42 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQ 42 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH
Confidence 456788899999999999999995
No 86
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=97.74 E-value=2.3e-05 Score=49.58 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=20.8
Q ss_pred cCCCCCccccccchHHHHHHhhhhc
Q psy8536 161 KTRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 161 ~~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
.....+|.||+||.+|+.+|| +|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~ 36 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFA 36 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHH
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHH
Confidence 345678999999999999999 886
No 87
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=97.73 E-value=2.7e-05 Score=49.28 Aligned_cols=24 Identities=8% Similarity=0.140 Sum_probs=21.5
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
.+..+|.||+||.+|+.+||++|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~ 37 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAE 37 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHH
Confidence 356788999999999999999996
No 88
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=7.2e-06 Score=53.06 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=22.3
Q ss_pred hhhhhcccceeeeeeeehhhhhhhhhhhc
Q psy8536 84 KVMYTYLVFQVKIWFQNRRAKERKQLKKR 112 (186)
Q Consensus 84 ~~~~~~~~~riq~WFqNrRak~~~~~~~~ 112 (186)
.....+...+|++||||||+++++.....
T Consensus 47 a~~~~l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 47 RVETKLSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred HHHhCCCHHhccHhhHhHHHHHHHHhHhh
Confidence 34445556799999999999998876544
No 89
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=97.65 E-value=6.1e-06 Score=48.59 Aligned_cols=25 Identities=48% Similarity=0.610 Sum_probs=19.8
Q ss_pred hhhhhcccceeeeeeeehhhhhhhh
Q psy8536 84 KVMYTYLVFQVKIWFQNRRAKERKQ 108 (186)
Q Consensus 84 ~~~~~~~~~riq~WFqNrRak~~~~ 108 (186)
....++...+|++||||+|++++++
T Consensus 31 A~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 31 AKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcCHHHhhHhhHHhhhhhccc
Confidence 3444556679999999999999875
No 90
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=97.60 E-value=4.7e-06 Score=51.25 Aligned_cols=27 Identities=41% Similarity=0.555 Sum_probs=20.4
Q ss_pred hhhhhcccceeeeeeeehhhhhhhhhh
Q psy8536 84 KVMYTYLVFQVKIWFQNRRAKERKQLK 110 (186)
Q Consensus 84 ~~~~~~~~~riq~WFqNrRak~~~~~~ 110 (186)
....++...+|++||||||+++++...
T Consensus 38 A~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 38 AKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred HHHhCCChhheeecchhhhhhhhhhhh
Confidence 344455567999999999999987644
No 91
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.56 E-value=1.4e-05 Score=49.87 Aligned_cols=37 Identities=8% Similarity=-0.001 Sum_probs=25.2
Q ss_pred ccCCCccccc--chhhhhhcccceeeeeeeehhhhhhhh
Q psy8536 72 IKDPSKDLFL--SNKVMYTYLVFQVKIWFQNRRAKERKQ 108 (186)
Q Consensus 72 ~~~~~~~~~~--~~~~~~~~~~~riq~WFqNrRak~~~~ 108 (186)
...++.+... ......++...+|++||||+|+++++.
T Consensus 23 ~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 23 LQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp HHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 3344444433 334555666679999999999998875
No 92
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=6.8e-05 Score=47.35 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.5
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
....++.||+||..|+.+||++|.
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~ 37 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFE 37 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH
Confidence 456788899999999999999995
No 93
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.52 E-value=7e-06 Score=49.60 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=21.4
Q ss_pred ccchhhhhhcccceeeeeeeehhhhhhhh
Q psy8536 80 FLSNKVMYTYLVFQVKIWFQNRRAKERKQ 108 (186)
Q Consensus 80 ~~~~~~~~~~~~~riq~WFqNrRak~~~~ 108 (186)
........++...+|++||||||++++..
T Consensus 31 r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 31 LEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 33444555666679999999999998753
No 94
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.52 E-value=9.1e-06 Score=49.22 Aligned_cols=40 Identities=13% Similarity=0.056 Sum_probs=24.4
Q ss_pred hhhhccCCCcccccch--hhhhhcccceeeeeeeehhhhhhh
Q psy8536 68 EEVVIKDPSKDLFLSN--KVMYTYLVFQVKIWFQNRRAKERK 107 (186)
Q Consensus 68 ~~~~~~~~~~~~~~~~--~~~~~~~~~riq~WFqNrRak~~~ 107 (186)
+..+....+.+..... ....++...+|++|||||||+..+
T Consensus 19 e~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 19 KAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred HHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 3334444444333333 344455567999999999998765
No 95
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.50 E-value=1.6e-05 Score=52.03 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=19.8
Q ss_pred cccceeeeeeeehhhhhhhhhhhc
Q psy8536 89 YLVFQVKIWFQNRRAKERKQLKKR 112 (186)
Q Consensus 89 ~~~~riq~WFqNrRak~~~~~~~~ 112 (186)
+...+|++||||+|+++++.....
T Consensus 61 ls~~qV~~WFqNRR~k~kr~~~~~ 84 (95)
T 2cuf_A 61 VTSLKVYNWFANRRKEIKRRANIA 84 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHHhhcc
Confidence 455689999999999999886653
No 96
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.49 E-value=1.7e-05 Score=49.13 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=21.3
Q ss_pred hhhhhcccceeeeeeeehhhhhhhhhh
Q psy8536 84 KVMYTYLVFQVKIWFQNRRAKERKQLK 110 (186)
Q Consensus 84 ~~~~~~~~~riq~WFqNrRak~~~~~~ 110 (186)
....++...+|++||||+|+++++...
T Consensus 36 A~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 36 AAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 344455567999999999999998764
No 97
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=97.49 E-value=1.5e-05 Score=50.84 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=22.4
Q ss_pred hhhhhhcccceeeeeeeehhhhhhhhhhhc
Q psy8536 83 NKVMYTYLVFQVKIWFQNRRAKERKQLKKR 112 (186)
Q Consensus 83 ~~~~~~~~~~riq~WFqNrRak~~~~~~~~ 112 (186)
.....++...+|++||||+|+++.+.....
T Consensus 43 LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 43 LSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred HHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 344555666799999999999998765443
No 98
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=97.46 E-value=9.9e-06 Score=48.33 Aligned_cols=26 Identities=42% Similarity=0.615 Sum_probs=18.6
Q ss_pred hhhhhcccceeeeeeeehhhhhhhhh
Q psy8536 84 KVMYTYLVFQVKIWFQNRRAKERKQL 109 (186)
Q Consensus 84 ~~~~~~~~~riq~WFqNrRak~~~~~ 109 (186)
....++...+|++||||+|+++++..
T Consensus 33 a~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 33 AMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred HHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 44445666799999999999998764
No 99
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.46 E-value=7.3e-05 Score=47.20 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.8
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
++..++.||.||..|+.+||++|+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~ 27 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFE 27 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHT
T ss_pred CCCCCCCCCccCHHHHHHHHHHHh
Confidence 457888999999999999999996
No 100
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.45 E-value=1.2e-05 Score=50.28 Aligned_cols=42 Identities=17% Similarity=0.133 Sum_probs=26.8
Q ss_pred hhccCCCcccccc--hhhhhhcccceeeeeeeehhhhhhhhhhh
Q psy8536 70 VVIKDPSKDLFLS--NKVMYTYLVFQVKIWFQNRRAKERKQLKK 111 (186)
Q Consensus 70 ~~~~~~~~~~~~~--~~~~~~~~~~riq~WFqNrRak~~~~~~~ 111 (186)
.+....+.+.... .....++...+|++||||+|+++++....
T Consensus 25 ~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 25 SFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp HHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred HHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 3333444433333 33444555679999999999999987653
No 101
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=7.3e-05 Score=45.92 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.5
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
++..++.||.||..|+.+||++|.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~ 27 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQ 27 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH
Confidence 456788899999999999999995
No 102
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.44 E-value=8.2e-05 Score=45.69 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.7
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
++..++.||.||..|+.+||++|.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~ 27 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQ 27 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHc
Confidence 456788899999999999999996
No 103
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.42 E-value=2.1e-05 Score=48.89 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=21.6
Q ss_pred hhhhhcccceeeeeeeehhhhhhhhhh
Q psy8536 84 KVMYTYLVFQVKIWFQNRRAKERKQLK 110 (186)
Q Consensus 84 ~~~~~~~~~riq~WFqNrRak~~~~~~ 110 (186)
....++...+|++||||+|+++++...
T Consensus 37 A~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 37 AAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 444455667999999999999998764
No 104
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=97.41 E-value=1.7e-05 Score=48.34 Aligned_cols=29 Identities=31% Similarity=0.565 Sum_probs=21.9
Q ss_pred hhhhhcccceeeeeeeehhhhhhhhhhhc
Q psy8536 84 KVMYTYLVFQVKIWFQNRRAKERKQLKKR 112 (186)
Q Consensus 84 ~~~~~~~~~riq~WFqNrRak~~~~~~~~ 112 (186)
....++...+|++||||+|+++++.....
T Consensus 35 a~~l~l~~~qV~~WFqNrR~k~kr~~~~~ 63 (67)
T 2k40_A 35 AQKLNLELDRIQIWFQNRRAKLKRSHRES 63 (67)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHCSCCTT
T ss_pred HHHHCcCHHHhhHhhHhHHHHHhHhchhc
Confidence 34445556799999999999999875543
No 105
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.39 E-value=6.4e-06 Score=51.15 Aligned_cols=25 Identities=20% Similarity=0.588 Sum_probs=19.5
Q ss_pred hhhhhcccceeeeeeeehhhhhhhh
Q psy8536 84 KVMYTYLVFQVKIWFQNRRAKERKQ 108 (186)
Q Consensus 84 ~~~~~~~~~riq~WFqNrRak~~~~ 108 (186)
....++...+|++||||||++++..
T Consensus 43 A~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 43 SKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred HHHhCCChhhcchhhhhcccCCCCC
Confidence 3444555679999999999998864
No 106
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.38 E-value=9.4e-05 Score=45.43 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=21.5
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
++..++.||.||..|+.+||++|+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~ 27 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYA 27 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHH
Confidence 456788899999999999999995
No 107
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=97.37 E-value=0.0001 Score=45.27 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.6
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
++..++.||.||..|+.+||++|+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~ 27 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFD 27 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH
Confidence 457888999999999999999995
No 108
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=97.36 E-value=6.9e-05 Score=45.04 Aligned_cols=22 Identities=45% Similarity=0.679 Sum_probs=18.1
Q ss_pred CCCccccccchHHHHHHhhhhc
Q psy8536 164 TKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 164 ~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
+.++.||.||..|+.+||++|+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~ 23 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFL 23 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHh
Confidence 4678899999999999999995
No 109
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=97.36 E-value=0.00011 Score=45.97 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=21.8
Q ss_pred cCCCCCccccccchHHHHHHhhhhc
Q psy8536 161 KTRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 161 ~~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
.....++.||.||..|+.+||++|+
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~ 29 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFR 29 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHh
Confidence 3456788899999999999999996
No 110
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=97.35 E-value=0.00011 Score=45.13 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=21.6
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
++..++.||.||..|+.+||++|.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~ 27 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFD 27 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH
Confidence 457788899999999999999995
No 111
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.33 E-value=0.00013 Score=45.97 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.5
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
.+..++.||+||..|+.+||++|+
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~ 28 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWD 28 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH
Confidence 356788899999999999999996
No 112
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=97.32 E-value=3.3e-05 Score=49.62 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=22.7
Q ss_pred hhhhhcccceeeeeeeehhhhhhhhhhhcc
Q psy8536 84 KVMYTYLVFQVKIWFQNRRAKERKQLKKRE 113 (186)
Q Consensus 84 ~~~~~~~~~riq~WFqNrRak~~~~~~~~~ 113 (186)
....++...+|++||||+|+++++......
T Consensus 38 a~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 67 (87)
T 1b72_B 38 AKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67 (87)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHCGGGGH
T ss_pred HHHHCcCHHHHHHHHHHHHHHhhhcccccc
Confidence 344455667999999999999988765543
No 113
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.29 E-value=0.00014 Score=45.89 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=21.5
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
+...++.||.||.+|+.+||++|.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~ 27 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFA 27 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH
Confidence 456788999999999999999995
No 114
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=97.27 E-value=8.8e-05 Score=44.40 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=15.4
Q ss_pred CCCccccccchHHHHHHhhhhc
Q psy8536 164 TKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 164 ~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
..++.||+||..|+.+||++|+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~ 23 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQ 23 (62)
T ss_dssp ------CCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999995
No 115
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.27 E-value=0.00015 Score=45.77 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=21.6
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
++..++.||.||..|+.+||++|+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~ 27 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFA 27 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH
Confidence 457888999999999999999996
No 116
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=97.23 E-value=0.00017 Score=43.96 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.3
Q ss_pred CCCccccccchHHHHHHhhhhc
Q psy8536 164 TKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 164 ~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
..++.||.||..|+.+||++|+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~ 23 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQ 23 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHH
Confidence 5788899999999999999996
No 117
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=97.19 E-value=0.00029 Score=45.79 Aligned_cols=24 Identities=38% Similarity=0.528 Sum_probs=21.2
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
....++.||.||.+|+.+||++|.
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~ 37 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFH 37 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHH
Confidence 346788899999999999999995
No 118
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=97.19 E-value=0.00019 Score=45.10 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=21.3
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
....++.||.||..|+.+||++|.
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~ 37 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYL 37 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH
Confidence 356788899999999999999995
No 119
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.19 E-value=0.00021 Score=43.86 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.1
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
+...++.|+.||..|+.+||++|.
T Consensus 4 ~~~~~r~R~~ft~~q~~~Le~~F~ 27 (70)
T 2e1o_A 4 GSSGKGGQVRFSNDQTIELEKKFE 27 (70)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH
Confidence 456778899999999999999995
No 120
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=97.18 E-value=0.00025 Score=44.37 Aligned_cols=24 Identities=50% Similarity=0.711 Sum_probs=21.5
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
.+..++.||.||..|+.+||++|.
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~ 33 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFL 33 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHh
Confidence 456788899999999999999995
No 121
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=97.15 E-value=4.8e-05 Score=48.43 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=20.9
Q ss_pred hhhhhcccceeeeeeeehhhhhhhhhh
Q psy8536 84 KVMYTYLVFQVKIWFQNRRAKERKQLK 110 (186)
Q Consensus 84 ~~~~~~~~~riq~WFqNrRak~~~~~~ 110 (186)
....++...+|++||||+|+++++...
T Consensus 39 a~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 39 MKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHCCCHHHcccccHHHHcccccccc
Confidence 344456667999999999999988643
No 122
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=97.15 E-value=0.00026 Score=43.90 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.4
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
++..++.||.||..|+.+||++|+
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~ 29 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQ 29 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH
Confidence 456788899999999999999995
No 123
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=97.13 E-value=4.7e-05 Score=45.30 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=19.4
Q ss_pred hhhhhcccceeeeeeeehhhhhhhh
Q psy8536 84 KVMYTYLVFQVKIWFQNRRAKERKQ 108 (186)
Q Consensus 84 ~~~~~~~~~riq~WFqNrRak~~~~ 108 (186)
....++...+|++||+|+|+++++.
T Consensus 35 a~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 35 MKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHCcCHHHHHHHHHHHHcccccC
Confidence 3444566679999999999998763
No 124
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=97.11 E-value=0.00025 Score=43.22 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=19.5
Q ss_pred CCccccccchHHHHHHhhhhc
Q psy8536 165 KDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 165 ~~~~r~~~~~~q~~~l~~~f~ 185 (186)
+++.||.||..|+.+||++|.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~ 22 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFL 22 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHh
Confidence 578899999999999999996
No 125
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=97.05 E-value=0.00025 Score=43.20 Aligned_cols=21 Identities=52% Similarity=0.792 Sum_probs=19.3
Q ss_pred CCccccccchHHHHHHhhhhc
Q psy8536 165 KDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 165 ~~~~r~~~~~~q~~~l~~~f~ 185 (186)
+++.||.||..|+.+||++|+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~ 22 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFH 22 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHc
Confidence 477899999999999999996
No 126
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=97.03 E-value=0.00035 Score=43.21 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=20.8
Q ss_pred CCCCccccccchHHHHHHhhhhc
Q psy8536 163 RTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 163 ~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
...++.||.||..|+.+||++|+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~ 27 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYA 27 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHh
Confidence 46788899999999999999996
No 127
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=97.02 E-value=0.00011 Score=45.53 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=21.7
Q ss_pred hhhhhcccceeeeeeeehhhhhhhhhhh
Q psy8536 84 KVMYTYLVFQVKIWFQNRRAKERKQLKK 111 (186)
Q Consensus 84 ~~~~~~~~~riq~WFqNrRak~~~~~~~ 111 (186)
....++...+|++||||+|+++++....
T Consensus 38 a~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 38 AKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 3445566679999999999999886554
No 128
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=96.99 E-value=0.00025 Score=42.18 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=16.4
Q ss_pred CCCccccccchHHHHHHhhhhc
Q psy8536 164 TKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 164 ~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
..++.||.||..|+.+||++|.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~ 23 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFN 23 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999995
No 129
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=96.96 E-value=0.00039 Score=42.04 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=20.0
Q ss_pred CCCccccccchHHHHHHhhhhc
Q psy8536 164 TKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 164 ~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
..++.||.||..|+.+||+.|+
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~ 23 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYA 23 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999995
No 130
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=96.91 E-value=0.00048 Score=40.34 Aligned_cols=21 Identities=43% Similarity=0.683 Sum_probs=19.3
Q ss_pred CCccccccchHHHHHHhhhhc
Q psy8536 165 KDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 165 ~~~~r~~~~~~q~~~l~~~f~ 185 (186)
+++.||.||..|+.+||++|+
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~ 22 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFK 22 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHH
Confidence 567899999999999999996
No 131
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.91 E-value=0.00023 Score=46.85 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=18.3
Q ss_pred ccceeeeeeeehhhhhhhhhhhc
Q psy8536 90 LVFQVKIWFQNRRAKERKQLKKR 112 (186)
Q Consensus 90 ~~~riq~WFqNrRak~~~~~~~~ 112 (186)
...+|++||||||+++.......
T Consensus 67 te~~V~~WFqNRR~k~kr~~~~~ 89 (102)
T 2da6_A 67 TEVRVYNWFANRRKEEAFRQKLA 89 (102)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceeeeecchHHHHHHhhHhh
Confidence 34589999999999998765544
No 132
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=96.90 E-value=0.0005 Score=41.65 Aligned_cols=24 Identities=17% Similarity=0.014 Sum_probs=22.0
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
++.++|.||+||..||..||.+|+
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~ 27 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIH 27 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHH
Confidence 467899999999999999999996
No 133
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=96.90 E-value=0.0004 Score=40.81 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=18.3
Q ss_pred CccccccchHHHHHHhhhhc
Q psy8536 166 DKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 166 ~~~r~~~~~~q~~~l~~~f~ 185 (186)
++.||.||..|+.+||++|.
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~ 20 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFR 20 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHh
Confidence 46799999999999999995
No 134
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=96.90 E-value=0.00035 Score=45.63 Aligned_cols=24 Identities=13% Similarity=-0.013 Sum_probs=17.9
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
....++.||.||..|+.+||++|.
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~ 45 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFV 45 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHH
Confidence 345667899999999999999995
No 135
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=96.89 E-value=0.00044 Score=43.63 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=20.4
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
.+..++.||.||..|+.+||+.|.
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~ 38 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFE 38 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHH
Confidence 456788899999999999999995
No 136
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=96.84 E-value=0.00045 Score=40.94 Aligned_cols=20 Identities=40% Similarity=0.632 Sum_probs=17.9
Q ss_pred CccccccchHHHHHHhhhhc
Q psy8536 166 DKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 166 ~~~r~~~~~~q~~~l~~~f~ 185 (186)
++.||.||..|+.+||++|+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~ 21 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFY 21 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 57799999999999999995
No 137
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=96.82 E-value=0.00054 Score=41.71 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=19.2
Q ss_pred CCccccccchHHHHHHhhhhc
Q psy8536 165 KDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 165 ~~~~r~~~~~~q~~~l~~~f~ 185 (186)
+++.||.||..|+.+||++|+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~ 22 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFK 22 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHH
Confidence 567899999999999999995
No 138
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=96.67 E-value=0.00014 Score=44.31 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=20.1
Q ss_pred hhhhhcccceeeeeeeehhhhhhhhh
Q psy8536 84 KVMYTYLVFQVKIWFQNRRAKERKQL 109 (186)
Q Consensus 84 ~~~~~~~~~riq~WFqNrRak~~~~~ 109 (186)
....++...+|++||+|+|++..+..
T Consensus 35 a~~~~l~~~qV~~WFqNrR~r~kk~~ 60 (67)
T 3k2a_A 35 AQDTGLTILQVNNWFINARRRIVQPM 60 (67)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHhCcCHHHhhhhhHHHHHHHhHHH
Confidence 34445666799999999999988653
No 139
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=96.66 E-value=0.00059 Score=40.50 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=13.4
Q ss_pred CCCCccccccchHHHHHHhhhhc
Q psy8536 163 RTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 163 ~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
...++.||.||..|+.+||..|.
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~ 25 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFR 25 (61)
T ss_dssp ---------CCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH
Confidence 45778899999999999999995
No 140
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.62 E-value=0.0012 Score=40.97 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=19.1
Q ss_pred CCCccccccchHHHHHHhhhhc
Q psy8536 164 TKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 164 ~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
...+.|+.||.+|+.+||++|.
T Consensus 7 ~~~~~R~~ft~~Ql~~Le~~F~ 28 (76)
T 2dn0_A 7 GASIYKNKKSHEQLSALKGSFC 28 (76)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHh
Confidence 4555699999999999999995
No 141
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.54 E-value=0.0048 Score=37.35 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHH
Q psy8536 15 QQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQ 54 (186)
Q Consensus 15 ~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFq 54 (186)
.-.+.|+..|.........+...|+.+.+|+..+|+.||-
T Consensus 16 ~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 16 PDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred CcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 3457899999999999999999999999999999999994
No 142
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=96.52 E-value=0.00018 Score=47.26 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=16.2
Q ss_pred cccceeeeeeeehhhhhhhh
Q psy8536 89 YLVFQVKIWFQNRRAKERKQ 108 (186)
Q Consensus 89 ~~~~riq~WFqNrRak~~~~ 108 (186)
+...+|++||||+|++....
T Consensus 69 lse~qV~vWFqNRR~k~k~k 88 (99)
T 1lfb_A 69 VTEVRVYNWFANRRKEEAFR 88 (99)
T ss_dssp CCHHHHHHHHHHHHHTTSCC
T ss_pred cCcceeeeccHHHHHHHHHh
Confidence 55679999999999987553
No 143
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=96.31 E-value=0.0018 Score=39.91 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=19.5
Q ss_pred CCCccccccchHHHHHHhhhhc
Q psy8536 164 TKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 164 ~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
..++.||.||..|+.+||++|.
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~ 26 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYL 26 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHH
T ss_pred CCCCCCcCCCHHHHHHHHHHHH
Confidence 4567799999999999999995
No 144
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=96.28 E-value=0.0014 Score=48.25 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=18.3
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
.+..||.||+||..|+.+||++|+
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~ 135 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYE 135 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHH
T ss_pred cccCCCCCcccCHHHHHHHHHHHH
Confidence 356788999999999999999996
No 145
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=96.25 E-value=0.0016 Score=45.79 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=18.1
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
.+.++|.||+||..|+.+||++|+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~ 107 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFG 107 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCcCccHHHHHHHHHHHH
Confidence 456788899999999999999996
No 146
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=96.19 E-value=0.0033 Score=38.61 Aligned_cols=24 Identities=8% Similarity=0.014 Sum_probs=20.9
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
++..++.|+.||..|+.+||+.|.
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~ 27 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLF 27 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHH
Confidence 356788899999999999999993
No 147
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=96.09 E-value=0.00057 Score=43.83 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=22.3
Q ss_pred hhhhhhcccceeeeeeeehhhhhhhhhhhc
Q psy8536 83 NKVMYTYLVFQVKIWFQNRRAKERKQLKKR 112 (186)
Q Consensus 83 ~~~~~~~~~~riq~WFqNrRak~~~~~~~~ 112 (186)
.....++...+|.+||+|+|.+........
T Consensus 41 LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 41 LSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 344555666799999999999988765433
No 148
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=96.05 E-value=0.0022 Score=45.82 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=17.3
Q ss_pred CCCCccccccchHHHHHHhhhhc
Q psy8536 163 RTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 163 ~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
+.++|.||+||..|+.+||++|+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~ 121 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFM 121 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHH
T ss_pred CCCCcCccccCHHHHHHHHHHHh
Confidence 46788899999999999999995
No 149
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=95.93 E-value=0.004 Score=43.94 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.7
Q ss_pred CCCCccccccchHHHHHHhhhhc
Q psy8536 163 RTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 163 ~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
+.++|.||.||..|+.+||++|+
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~ 113 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFE 113 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHHH
Confidence 46778899999999999999996
No 150
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=95.66 E-value=0.0038 Score=44.73 Aligned_cols=24 Identities=25% Similarity=0.170 Sum_probs=13.5
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
.+..+|.||+||..|+.+||++|+
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~ 119 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFL 119 (164)
T ss_dssp ----------CCHHHHHHHHHHHH
T ss_pred cccCCCCceeccHHHHHHHHHHHh
Confidence 356788899999999999999996
No 151
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=95.60 E-value=0.0043 Score=44.38 Aligned_cols=24 Identities=38% Similarity=0.492 Sum_probs=17.4
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
+...+|.||.||..|+.+||++|+
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~ 117 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFK 117 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHh
Confidence 346788899999999999999996
No 152
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=95.53 E-value=0.0059 Score=38.88 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=19.5
Q ss_pred CCCCccccccchHHHHHHhhhhc
Q psy8536 163 RTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 163 ~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
..+++.|+.||..|+.+||+.|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~ 47 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFA 47 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHH
Confidence 34556699999999999999995
No 153
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.37 E-value=0.0013 Score=40.05 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=16.2
Q ss_pred hhhhhhcccceeeeeeeehhhh
Q psy8536 83 NKVMYTYLVFQVKIWFQNRRAK 104 (186)
Q Consensus 83 ~~~~~~~~~~riq~WFqNrRak 104 (186)
-....++..-.|++||+|+|+.
T Consensus 38 LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 38 ISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHhhcccc
Confidence 3444455566999999999974
No 154
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=95.26 E-value=0.0075 Score=45.09 Aligned_cols=24 Identities=8% Similarity=0.214 Sum_probs=20.0
Q ss_pred CCCCCccccccchHHHHHHhhhhc
Q psy8536 162 TRTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 162 ~~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
.+..+|.|++||..|+.+||++|+
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~ 162 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYD 162 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHH
Confidence 456889999999999999999996
No 155
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=95.10 E-value=0.011 Score=41.91 Aligned_cols=23 Identities=22% Similarity=0.383 Sum_probs=20.6
Q ss_pred CCCCccccccchHHHHHHhhhhc
Q psy8536 163 RTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 163 ~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
+.++|.||.||..|+.+||+.|+
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~ 116 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFL 116 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTT
T ss_pred cCCCCCCcccCHHHHHHHHHHHc
Confidence 45677899999999999999996
No 156
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=95.03 E-value=0.01 Score=35.33 Aligned_cols=21 Identities=14% Similarity=-0.007 Sum_probs=18.9
Q ss_pred CCCccccccchHHHHHHhhhh
Q psy8536 164 TKDKYRVVYSDQQRLELEKEF 184 (186)
Q Consensus 164 ~~~~~r~~~~~~q~~~l~~~f 184 (186)
.+++.|+.||..|+.+||+.|
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f 22 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYF 22 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHH
Confidence 356779999999999999999
No 157
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=94.74 E-value=0.0028 Score=51.51 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=24.3
Q ss_pred hhhhccCCCccc--ccchhhhhhcccceeeeeeeehhhhhh
Q psy8536 68 EEVVIKDPSKDL--FLSNKVMYTYLVFQVKIWFQNRRAKER 106 (186)
Q Consensus 68 ~~~~~~~~~~~~--~~~~~~~~~~~~~riq~WFqNrRak~~ 106 (186)
+..+...++.+. ........++...+|++||||||++++
T Consensus 381 e~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 381 EQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred HHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 344444444433 333444555666799999999998863
No 158
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=91.18 E-value=0.52 Score=27.09 Aligned_cols=45 Identities=16% Similarity=0.366 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHH
Q psy8536 9 RVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQ 54 (186)
Q Consensus 9 r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFq 54 (186)
|..|+.+........+.. .........++|.++|++...|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 567999988777554443 332222367899999999999999975
No 159
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=90.71 E-value=0.84 Score=28.48 Aligned_cols=46 Identities=15% Similarity=0.328 Sum_probs=33.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHH
Q psy8536 4 TKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQ 54 (186)
Q Consensus 4 ~~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFq 54 (186)
++++.+..|+.++....-..+.. . ....++|..+|++...|..|..
T Consensus 15 ~~~~~~~~ys~e~k~~~v~~~~~-g----~s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 15 KGKRPLRSLTPRDKIHAIQRIHD-G----ESKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CCSSCCSSCCHHHHHHHHHHHHH-T----CCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHC-C----CCHHHHHHHHCcCHHHHHHHHH
Confidence 34456778999986655555542 2 2356889999999999999974
No 160
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=88.83 E-value=1.6 Score=29.00 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=38.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHH
Q psy8536 7 KYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAK 59 (186)
Q Consensus 7 r~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~ 59 (186)
++|..||.++...+-..+..+.... ..+||+.+|++...|..|..++...
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 3578999999987777775555443 3368999999999999999776654
No 161
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=82.12 E-value=6.2 Score=24.44 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHH
Q psy8536 11 VYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQL 64 (186)
Q Consensus 11 ~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~ 64 (186)
.++..+..+|.-.|... ..-.++|..+|++...|+.+...-+.+.++..
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 35677777777655333 24678899999999999998876666665544
No 162
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=80.20 E-value=4.7 Score=21.09 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHH
Q psy8536 10 VVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQ 54 (186)
Q Consensus 10 ~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFq 54 (186)
..++.++...+...+... . ...++|+.+|++...|..|..
T Consensus 4 ~~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHh
Confidence 357787775555555432 2 366889999999999999985
No 163
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=77.96 E-value=5.8 Score=25.34 Aligned_cols=45 Identities=16% Similarity=-0.040 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHH
Q psy8536 9 RVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAK 59 (186)
Q Consensus 9 r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~ 59 (186)
...+|..+.++|.-.+.-. .-.++|..+|+++..|+.+..+-+.|
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4578999999998765322 33889999999999999888654444
No 164
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=75.31 E-value=1.5 Score=23.55 Aligned_cols=40 Identities=10% Similarity=0.260 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHh
Q psy8536 11 VYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQN 55 (186)
Q Consensus 11 ~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqn 55 (186)
.++.++...+...+... ....+||..+|++...|..|+..
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHH
Confidence 45666665555555432 24568899999999999999854
No 165
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=74.68 E-value=9.1 Score=23.85 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHcCCChhHHHHHHH
Q psy8536 9 RVVYSDQQRLELEKEFHYS-RYITIRRKAELANSLGLSERQVKIWFQ 54 (186)
Q Consensus 9 r~~~t~~q~~~L~~~f~~~-~~p~~~~r~~la~~~~l~~~~v~~WFq 54 (186)
|..||.++....-..+... . ....++|..+|++...|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g----~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG----ASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG----SCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC----ChHHHHHHHHCcCHHHHHHHHH
Confidence 4679998876555555322 2 2466899999999999999974
No 166
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=73.25 E-value=9.2 Score=23.93 Aligned_cols=43 Identities=26% Similarity=0.200 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHH
Q psy8536 11 VYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAK 59 (186)
Q Consensus 11 ~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~ 59 (186)
.++..+.++|.-.+... .-.++|..+|++...|+.+..+-+.+
T Consensus 27 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 57888999988863322 34789999999999999887644444
No 167
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=73.07 E-value=6.9 Score=22.45 Aligned_cols=46 Identities=15% Similarity=0.014 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHH
Q psy8536 11 VYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKER 61 (186)
Q Consensus 11 ~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~ 61 (186)
.+++.+..+|...|... ..-.++|..+|++...|..+...-+.+-+
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 47788888888776433 34568999999999999988865554444
No 168
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=69.71 E-value=12 Score=21.63 Aligned_cols=45 Identities=22% Similarity=0.255 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHH
Q psy8536 9 RVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAK 59 (186)
Q Consensus 9 r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~ 59 (186)
-..+++.+..+|...+ ..+ .-.++|..+|++...|..+...-+.+
T Consensus 9 ~~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 9 KPLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3568999999998843 222 45689999999999999888654443
No 169
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=69.04 E-value=12 Score=23.78 Aligned_cols=46 Identities=13% Similarity=0.320 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHHH-hhc-CCCC-HHHHHHHHHHcCCChhHHHHHHH
Q psy8536 9 RVVYSDQQRLELEKEF-HYS-RYIT-IRRKAELANSLGLSERQVKIWFQ 54 (186)
Q Consensus 9 r~~~t~~q~~~L~~~f-~~~-~~p~-~~~r~~la~~~~l~~~~v~~WFq 54 (186)
+..||.++....-..+ ... .+.+ .....++|..+|++...|..|-.
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4579998886544444 322 1333 24677899999999999999974
No 170
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=68.51 E-value=11 Score=23.75 Aligned_cols=47 Identities=19% Similarity=0.279 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHcC--CChhHHHHHHH
Q psy8536 8 YRVVYSDQQRLELEKEFH-----YSRYITIRRKAELANSLG--LSERQVKIWFQ 54 (186)
Q Consensus 8 ~r~~~t~~q~~~L~~~f~-----~~~~p~~~~r~~la~~~~--l~~~~v~~WFq 54 (186)
....++.+++..|+.+|. .+.+.+..+-..+...+| ++...|..+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 346789999999999985 556899999999888887 56778887773
No 171
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=68.14 E-value=16 Score=24.38 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHHH
Q psy8536 12 YSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLK 65 (186)
Q Consensus 12 ~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~~ 65 (186)
++..+..+|. .|- ....-.++|..+|++...|+.+...-+.+-++...
T Consensus 110 L~~~~r~v~~-~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 110 FSKFEKEVLT-YLI-----RGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp SCHHHHHHHH-HHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666 332 23456789999999999999988766666554443
No 172
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=65.48 E-value=9 Score=22.11 Aligned_cols=46 Identities=7% Similarity=0.034 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhH
Q psy8536 11 VYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 11 ~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr 57 (186)
.+++.+..+|...|..+.+- ...-.++|..+|++...|..+...-+
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~ 50 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKAL 50 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47888999998888432221 23457789999999999998765333
No 173
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=63.94 E-value=11 Score=22.79 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHH
Q psy8536 11 VYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAK 59 (186)
Q Consensus 11 ~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~ 59 (186)
.++..+.++|.-.+. . ..-.++|..+|++...|+.+..+-+.+
T Consensus 21 ~Lt~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKLIAQ--G----LPNKMIARRLDITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHHHTT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 578888998887432 2 356789999999999999887654444
No 174
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=63.71 E-value=15 Score=24.86 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=32.4
Q ss_pred CCCCCCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHcCCCh
Q psy8536 7 KYRVVYSDQQRLELEKEFH-----YSRYITIRRKAELANSLGLSE 46 (186)
Q Consensus 7 r~r~~~t~~q~~~L~~~f~-----~~~~p~~~~r~~la~~~~l~~ 46 (186)
.+|..+|.+|+..|+.+|. .+.+.+..+...+...+|...
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 49 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP 49 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCC
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCc
Confidence 3467899999999999996 466889999989888898654
No 175
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=62.36 E-value=16 Score=22.41 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCChhHHHHHH
Q psy8536 11 VYSDQQRLELEKEFHY-----SRYITIRRKAELANSLGLSERQVKIWF 53 (186)
Q Consensus 11 ~~t~~q~~~L~~~f~~-----~~~p~~~~r~~la~~~~l~~~~v~~WF 53 (186)
.++.++...+...|.. +.+.+..+-..+...+|++...+...|
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 49 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIW 49 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 3678899999999963 557788888888888899888777665
No 176
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=61.17 E-value=11 Score=22.98 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHcCCChhHHHHHHH
Q psy8536 10 VVYSDQQRLELEKEFH-----YSRYITIRRKAELANSLGLSERQVKIWFQ 54 (186)
Q Consensus 10 ~~~t~~q~~~L~~~f~-----~~~~p~~~~r~~la~~~~l~~~~v~~WFq 54 (186)
..++.++...|...|. .+.+.+..+...+...+|++...|..+|.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 3567788899999985 35578888888888899999888887773
No 177
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=60.90 E-value=31 Score=22.36 Aligned_cols=48 Identities=19% Similarity=0.159 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHH
Q psy8536 11 VYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63 (186)
Q Consensus 11 ~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~ 63 (186)
.+++.+..++.-.|... ..-.++|..+|++...|..+...-+.+-+..
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 46788888887775433 2457889999999999999997766665543
No 178
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=60.37 E-value=23 Score=20.61 Aligned_cols=49 Identities=10% Similarity=0.071 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHH
Q psy8536 11 VYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKE 60 (186)
Q Consensus 11 ~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~ 60 (186)
.+++.+..+|...|..... ....-.++|..+|++...|..+...-+.+-
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKL 58 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 5788999999888852110 113446889999999999998875444443
No 179
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=59.73 E-value=16 Score=21.44 Aligned_cols=42 Identities=26% Similarity=0.285 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHH
Q psy8536 12 YSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAK 59 (186)
Q Consensus 12 ~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~ 59 (186)
+++.+..+|.-.+ .. ..-.++|..+|++...|..+..+-+.+
T Consensus 17 L~~~e~~vl~l~~--~g----~s~~eIA~~l~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQVLSAVV--AG----LPNKSIAYDLDISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHHHHHHT--TT----CCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--cC----CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 5677777776643 22 234689999999999999887654444
No 180
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=57.61 E-value=15 Score=19.96 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHH
Q psy8536 14 DQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQ 54 (186)
Q Consensus 14 ~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFq 54 (186)
.++...+...+.. .+ ...++|..+|++...|..|..
T Consensus 18 ~~~~~~i~~l~~~-g~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKM-GY----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHT-TC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 5555555554432 22 466889999999999998874
No 181
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=56.83 E-value=17 Score=22.43 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHcCCChhHHHHHH
Q psy8536 12 YSDQQRLELEKEFH-----YSRYITIRRKAELANSLGLSERQVKIWF 53 (186)
Q Consensus 12 ~t~~q~~~L~~~f~-----~~~~p~~~~r~~la~~~~l~~~~v~~WF 53 (186)
++.++...|+..|. .+.+.+..+-..+...+|++...|..+|
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 50 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIW 50 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHH
Confidence 56788999999985 3557888888888888899988887766
No 182
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=56.04 E-value=0.47 Score=33.61 Aligned_cols=23 Identities=0% Similarity=-0.178 Sum_probs=15.2
Q ss_pred CCCCccccccchHHHHHHhhhhc
Q psy8536 163 RTKDKYRVVYSDQQRLELEKEFH 185 (186)
Q Consensus 163 ~~~~~~r~~~~~~q~~~l~~~f~ 185 (186)
.+.+|.||.+|..|+.+|+..|+
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~ 156 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQ 156 (169)
T ss_dssp -------EEEECCCCEECCSSCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHh
Confidence 45788999999999999999986
No 183
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=55.97 E-value=21 Score=25.59 Aligned_cols=48 Identities=17% Similarity=0.107 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHH
Q psy8536 11 VYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63 (186)
Q Consensus 11 ~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~ 63 (186)
.+++.+..+|.-.|.. ...-.++|..+|++...|..+...-+.+-++.
T Consensus 187 ~L~~~~r~vl~l~~~~-----g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE-----ELPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TSCHHHHHHHHHHHTS-----CCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc-----CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3566777777766632 23557899999999999999887666665543
No 184
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=55.12 E-value=20 Score=24.30 Aligned_cols=50 Identities=12% Similarity=0.144 Sum_probs=36.9
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCHHHHHHHH-HHc--CCChhHHHHHHHh
Q psy8536 6 DKYRVVYSDQQRLELEKEF-HYSRYITIRRKAELA-NSL--GLSERQVKIWFQN 55 (186)
Q Consensus 6 rr~r~~~t~~q~~~L~~~f-~~~~~p~~~~r~~la-~~~--~l~~~~v~~WFqn 55 (186)
+++|.++|.+|...|-..+ ..++-.+-.+....| ..+ |++...|..|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 5678999999999999999 666665544433322 267 7888899988865
No 185
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=53.39 E-value=42 Score=21.61 Aligned_cols=48 Identities=17% Similarity=0.136 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHH
Q psy8536 11 VYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63 (186)
Q Consensus 11 ~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~ 63 (186)
.+++.+..+|.-.|... ..-.++|..+|++...|..+...-+.+-+..
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 36677777777665433 2457889999999999999887666665544
No 186
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=53.33 E-value=30 Score=22.58 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHh
Q psy8536 10 VVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQN 55 (186)
Q Consensus 10 ~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqn 55 (186)
..++.++...+...+... ....++|..+|++...|..|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~G-----~s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-----VSLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-----CCHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHc
Confidence 568888887777776532 23567899999999999999964
No 187
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=52.64 E-value=9.5 Score=22.63 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.0
Q ss_pred HHHHHHHcCCChhHHHHHHHhhH
Q psy8536 35 KAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 35 r~~la~~~~l~~~~v~~WFqnrr 57 (186)
..+||+.+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 57899999999999999997654
No 188
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=52.36 E-value=37 Score=20.55 Aligned_cols=49 Identities=8% Similarity=0.076 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHH
Q psy8536 11 VYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKE 60 (186)
Q Consensus 11 ~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~ 60 (186)
.++..+..+|...|....- ....-.++|..+|++...|+.+...-+.+-
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKL 66 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4678888888888752110 123557789999999999998875444443
No 189
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=51.33 E-value=38 Score=20.61 Aligned_cols=43 Identities=16% Similarity=0.116 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHH
Q psy8536 11 VYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAK 59 (186)
Q Consensus 11 ~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~ 59 (186)
.++..+..+|.-.+. . ..-.++|..+|++...|+.+..+-+.+
T Consensus 29 ~Lt~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEILLLIAK--G----YSNQEIASASHITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHHHHHHT--T----CCTTHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 477888888877533 2 233578999999999999887654444
No 190
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=50.19 E-value=20 Score=19.82 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=19.8
Q ss_pred HHHHHHcCCChhHHHHHHHhhHHH
Q psy8536 36 AELANSLGLSERQVKIWFQNRRAK 59 (186)
Q Consensus 36 ~~la~~~~l~~~~v~~WFqnrr~~ 59 (186)
.++|..+|+++..|..+..+-+.+
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH
Confidence 588999999999999888655444
No 191
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=49.37 E-value=9.3 Score=26.47 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=33.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHH
Q psy8536 17 RLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAK 59 (186)
Q Consensus 17 ~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~ 59 (186)
+..-...|....| + .....||+..|++...|-..|.|+-.-
T Consensus 21 l~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L 61 (194)
T 2q24_A 21 LAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREAL 61 (194)
T ss_dssp HHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHHH
Confidence 3344555888888 6 899999999999999999999988544
No 192
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=49.19 E-value=44 Score=20.55 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhh
Q psy8536 9 RVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNR 56 (186)
Q Consensus 9 r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnr 56 (186)
-..+|..++.+|.-... . ..-.++|..+|+++..|+....+=
T Consensus 27 ~~~Lt~rE~~Vl~l~~~--G----~s~~eIA~~L~iS~~TV~~~~~~i 68 (90)
T 3ulq_B 27 QDVLTPRECLILQEVEK--G----FTNQEIADALHLSKRSIEYSLTSI 68 (90)
T ss_dssp --CCCHHHHHHHHHHHT--T----CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45789999999987662 2 246789999999999999776543
No 193
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=48.98 E-value=8.9 Score=21.43 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=19.7
Q ss_pred HHHHHHHcCCChhHHHHHHHhhH
Q psy8536 35 KAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 35 r~~la~~~~l~~~~v~~WFqnrr 57 (186)
..+||..+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999987653
No 194
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=48.72 E-value=42 Score=23.14 Aligned_cols=47 Identities=11% Similarity=0.061 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHH
Q psy8536 12 YSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63 (186)
Q Consensus 12 ~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~ 63 (186)
++..+..+|.-.|-.. ..-.++|..+|++...|+.+...-+.+-++.
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3445555555444322 3456899999999999999887666555543
No 195
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=47.30 E-value=10 Score=21.33 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=19.8
Q ss_pred HHHHHHHcCCChhHHHHHHHhhH
Q psy8536 35 KAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 35 r~~la~~~~l~~~~v~~WFqnrr 57 (186)
..+||..+|++...|..|..+++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 57799999999999999987654
No 196
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=47.13 E-value=18 Score=21.56 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.7
Q ss_pred HHHHHHHcCCChhHHHHHHHhh
Q psy8536 35 KAELANSLGLSERQVKIWFQNR 56 (186)
Q Consensus 35 r~~la~~~~l~~~~v~~WFqnr 56 (186)
..+||+.||++..-|--|..+.
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~ 34 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAG 34 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHhCC
Confidence 6789999999999999998653
No 197
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=46.98 E-value=37 Score=24.72 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHH
Q psy8536 10 VVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAK 59 (186)
Q Consensus 10 ~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~ 59 (186)
..+|..++++|.-... . ..-.++|..+|+++..|+....+-+.|
T Consensus 174 ~~Lt~~e~~vl~~~~~--g----~s~~eIa~~l~is~~tV~~~~~~~~~k 217 (236)
T 2q0o_A 174 QMLSPREMLCLVWASK--G----KTASVTANLTGINARTVQHYLDKARAK 217 (236)
T ss_dssp GSCCHHHHHHHHHHHT--T----CCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4689999999876542 2 244788999999999999888765555
No 198
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=45.23 E-value=39 Score=19.55 Aligned_cols=41 Identities=7% Similarity=0.095 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhH
Q psy8536 10 VVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 10 ~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr 57 (186)
..++.+.+..+...... ...+||..+|++...|..|=.+++
T Consensus 9 ~~~~g~~lr~~R~~~gl-------tq~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSL-------TQKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTTC-------CHHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcCC-------CHHHHHHHhCcCHHHHHHHHcCCC
Confidence 36788888888776543 357899999999999999987654
No 199
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=44.91 E-value=11 Score=21.45 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=19.4
Q ss_pred HHHHHHHcCCChhHHHHHHHhhH
Q psy8536 35 KAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 35 r~~la~~~~l~~~~v~~WFqnrr 57 (186)
..+||..+|++...|..|..+++
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~ 41 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 57799999999999999986543
No 200
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=44.40 E-value=20 Score=24.88 Aligned_cols=43 Identities=28% Similarity=0.327 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHcCCC--hhHHHH
Q psy8536 9 RVVYSDQQRLELEKEFH-----YSRYITIRRKAELANSLGLS--ERQVKI 51 (186)
Q Consensus 9 r~~~t~~q~~~L~~~f~-----~~~~p~~~~r~~la~~~~l~--~~~v~~ 51 (186)
.+.+|.+|+..|+.+|. .+.+.+..+-..+...+|+. +..|..
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~ 51 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVND 51 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChhHHHHHH
Confidence 47899999999999995 45588888888888888864 444443
No 201
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=44.08 E-value=12 Score=21.61 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=19.9
Q ss_pred HHHHHHHcCCChhHHHHHHHhhH
Q psy8536 35 KAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 35 r~~la~~~~l~~~~v~~WFqnrr 57 (186)
..+||..+|++...|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999997654
No 202
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=43.08 E-value=19 Score=20.81 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=17.7
Q ss_pred HHHHHHHcCCChhHHHHHHH
Q psy8536 35 KAELANSLGLSERQVKIWFQ 54 (186)
Q Consensus 35 r~~la~~~~l~~~~v~~WFq 54 (186)
..++|..||++...|..|-.
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~ 24 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQE 24 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 46789999999999999974
No 203
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=42.98 E-value=18 Score=20.83 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=19.4
Q ss_pred HHHHHHHcCCChhHHHHHHHhh
Q psy8536 35 KAELANSLGLSERQVKIWFQNR 56 (186)
Q Consensus 35 r~~la~~~~l~~~~v~~WFqnr 56 (186)
..+||..+|++...|..|..++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 5679999999999999999765
No 204
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=42.05 E-value=13 Score=21.38 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=20.1
Q ss_pred HHHHHHHHcCCChhHHHHHHHhhH
Q psy8536 34 RKAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 34 ~r~~la~~~~l~~~~v~~WFqnrr 57 (186)
...+||..+|++...|..|..+++
T Consensus 20 s~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 20 RQAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 356799999999999999987654
No 205
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=41.82 E-value=54 Score=20.68 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHh
Q psy8536 10 VVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQN 55 (186)
Q Consensus 10 ~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqn 55 (186)
..++.++...+...+. ..+ ...++|..+|++...|..|...
T Consensus 16 ~~~s~~~r~~i~~~~~-~g~----s~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAA-DGI----RPCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp SCCCHHHHHHHHHHHH-TTC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 3588887777666665 332 3467899999999999999953
No 206
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=40.86 E-value=67 Score=20.25 Aligned_cols=51 Identities=12% Similarity=0.084 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHH
Q psy8536 11 VYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERK 62 (186)
Q Consensus 11 ~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~ 62 (186)
.+++.+..++.-.|..+.+ ....-.++|..+|++...|+..-..-..+-+.
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~ 69 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 69 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4677788888887754321 12456788999999999999877554444443
No 207
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=40.76 E-value=15 Score=21.32 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.1
Q ss_pred HHHHHHHHcCCChhHHHHHHHhhH
Q psy8536 34 RKAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 34 ~r~~la~~~~l~~~~v~~WFqnrr 57 (186)
...+||..+|++...|..|..+++
T Consensus 25 sq~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 25 SQEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCS
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCC
Confidence 357799999999999999987653
No 208
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=40.57 E-value=52 Score=18.98 Aligned_cols=46 Identities=13% Similarity=0.297 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHcC--CChhHHHHHHH
Q psy8536 9 RVVYSDQQRLELEKEFH-----YSRYITIRRKAELANSLG--LSERQVKIWFQ 54 (186)
Q Consensus 9 r~~~t~~q~~~L~~~f~-----~~~~p~~~~r~~la~~~~--l~~~~v~~WFq 54 (186)
...++.+++..|...|. .+.+.+..+-..+...+| ++...|...|.
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 5 KKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp CCSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 35689999999999996 345677888888878777 45667766663
No 209
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=39.92 E-value=15 Score=20.68 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=19.2
Q ss_pred HHHHHHHcCCChhHHHHHHHhhH
Q psy8536 35 KAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 35 r~~la~~~~l~~~~v~~WFqnrr 57 (186)
..+||..+|++...|..|..+++
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~ 39 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57799999999999999986543
No 210
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=39.49 E-value=56 Score=18.99 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHcCC--ChhH---HHHHH
Q psy8536 9 RVVYSDQQRLELEKEFH-----YSRYITIRRKAELANSLGL--SERQ---VKIWF 53 (186)
Q Consensus 9 r~~~t~~q~~~L~~~f~-----~~~~p~~~~r~~la~~~~l--~~~~---v~~WF 53 (186)
...++.+++..|...|. .+.+.+..+...+...+|. +... |..+|
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 59 (86)
T 1j7q_A 5 ARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEA 59 (86)
T ss_dssp CCCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35678889999999985 4568889999888888884 4555 65555
No 211
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=39.35 E-value=16 Score=21.55 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=20.5
Q ss_pred HHHHHHHcCCChhHHHHHHHhhHH
Q psy8536 35 KAELANSLGLSERQVKIWFQNRRA 58 (186)
Q Consensus 35 r~~la~~~~l~~~~v~~WFqnrr~ 58 (186)
..+||..+|++...|..|-.+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 567999999999999999977653
No 212
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=38.32 E-value=54 Score=19.03 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHcC-CChhHHHHHH
Q psy8536 10 VVYSDQQRLELEKEFH-----YSRYITIRRKAELANSLG-LSERQVKIWF 53 (186)
Q Consensus 10 ~~~t~~q~~~L~~~f~-----~~~~p~~~~r~~la~~~~-l~~~~v~~WF 53 (186)
..++.++...|...|. .+.+.+..+-..+...+| ++...|...|
T Consensus 3 ~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~ 52 (86)
T 2opo_A 3 AEDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMM 52 (86)
T ss_dssp ---CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred ccCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3578889999999985 345677888888777777 6667777666
No 213
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=38.10 E-value=17 Score=20.76 Aligned_cols=23 Identities=22% Similarity=0.069 Sum_probs=19.6
Q ss_pred HHHHHHHHcCCChhHHHHHHHhh
Q psy8536 34 RKAELANSLGLSERQVKIWFQNR 56 (186)
Q Consensus 34 ~r~~la~~~~l~~~~v~~WFqnr 56 (186)
...+||..+|++...|..|..++
T Consensus 28 s~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 28 SQETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTC
T ss_pred CHHHHHHHHCcCHHHHHHHHCCC
Confidence 35779999999999999998665
No 214
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=38.07 E-value=23 Score=21.09 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=19.9
Q ss_pred HHHHHHHHcCCChhHHHHHHHhhH
Q psy8536 34 RKAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 34 ~r~~la~~~~l~~~~v~~WFqnrr 57 (186)
...+||..+|++...|..|..+++
T Consensus 27 sq~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 27 TQSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHCGG
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 357799999999999999987543
No 215
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=37.71 E-value=16 Score=20.77 Aligned_cols=20 Identities=30% Similarity=0.614 Sum_probs=17.9
Q ss_pred HHHHHHHHcCCChhHHHHHH
Q psy8536 34 RKAELANSLGLSERQVKIWF 53 (186)
Q Consensus 34 ~r~~la~~~~l~~~~v~~WF 53 (186)
...+||+.+|++..-|.-|.
T Consensus 12 tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 12 TQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SHHHHHHHHTCCHHHHHHCC
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 35789999999999999997
No 216
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=37.56 E-value=19 Score=21.49 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=20.6
Q ss_pred HHHHHHHHcCCChhHHHHHHHhhH
Q psy8536 34 RKAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 34 ~r~~la~~~~l~~~~v~~WFqnrr 57 (186)
...+||+.+|++...|..|..+++
T Consensus 33 sq~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 33 TQFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTCG
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 357899999999999999997665
No 217
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=37.22 E-value=27 Score=25.58 Aligned_cols=53 Identities=21% Similarity=0.100 Sum_probs=35.3
Q ss_pred CCCCCCHHHH-HHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHH
Q psy8536 8 YRVVYSDQQR-LELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKER 61 (186)
Q Consensus 8 ~r~~~t~~q~-~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~ 61 (186)
.|...+.+++ ..-.+.|....|- ......||..+|++...|-..|.|+-.-..
T Consensus 25 ~~~~~tr~~Il~aA~~l~~~~G~~-~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~ 78 (241)
T 2hxi_A 25 GRRRWSTEQILDAAAELLLAGDAE-TFSVRKLAASLGTDSSSLYRHFRNKTELLR 78 (241)
T ss_dssp ---CCCHHHHHHHHHHHHSSSSCC-CCCHHHHHHHTTSCHHHHHHHTSSHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCcc-cCCHHHHHHHhCcCHHHHHHHcCCHHHHHH
Confidence 3455666543 3344446666554 466677899999999999999999865533
No 218
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=37.15 E-value=17 Score=22.29 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=20.0
Q ss_pred HHHHHHHHcCCChhHHHHHHHhhH
Q psy8536 34 RKAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 34 ~r~~la~~~~l~~~~v~~WFqnrr 57 (186)
...+||..+|++...|..|..+++
T Consensus 24 sq~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 24 TQLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSC
T ss_pred CHHHHHHHHCcCHHHHHHHHhCCC
Confidence 457799999999999999986543
No 219
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=36.54 E-value=64 Score=26.49 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHcCC--ChhHHHHHH
Q psy8536 9 RVVYSDQQRLELEKEFH-----YSRYITIRRKAELANSLGL--SERQVKIWF 53 (186)
Q Consensus 9 r~~~t~~q~~~L~~~f~-----~~~~p~~~~r~~la~~~~l--~~~~v~~WF 53 (186)
+..|+.+|+..|+++|. .+.+.+..+...+...+|+ ++.+|..-|
T Consensus 293 ~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~Lf 344 (440)
T 3u0k_A 293 RDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMI 344 (440)
T ss_dssp CBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 56899999999999995 5668888998888888875 566666555
No 220
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=36.39 E-value=38 Score=22.96 Aligned_cols=36 Identities=14% Similarity=0.279 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHhh-------cCCCCHHHHHHHHHHcCCCh
Q psy8536 11 VYSDQQRLELEKEFHY-------SRYITIRRKAELANSLGLSE 46 (186)
Q Consensus 11 ~~t~~q~~~L~~~f~~-------~~~p~~~~r~~la~~~~l~~ 46 (186)
.+|.+|+..|+.+|.. +.+.+..+-..+.+.+|+..
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~ 44 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNP 44 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCC
Confidence 5799999999999852 34788888888888888653
No 221
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=36.11 E-value=43 Score=20.71 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHhh
Q psy8536 32 IRRKAELANSLGLSERQVKIWFQNR 56 (186)
Q Consensus 32 ~~~r~~la~~~~l~~~~v~~WFqnr 56 (186)
.....+||..+|++++.+...|+..
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3567789999999999999988544
No 222
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=35.99 E-value=18 Score=20.97 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.0
Q ss_pred HHHHHHHcCCChhHHHHHHHhhH
Q psy8536 35 KAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 35 r~~la~~~~l~~~~v~~WFqnrr 57 (186)
..+||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999997665
No 223
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=35.37 E-value=24 Score=24.41 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=31.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHH
Q psy8536 20 LEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAK 59 (186)
Q Consensus 20 L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~ 59 (186)
-...|....| . .....||+..|++...|-..|.|+-.-
T Consensus 22 A~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~~L 59 (196)
T 2qwt_A 22 AYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQAL 59 (196)
T ss_dssp HHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHHHH
Confidence 3444888888 5 788999999999999999999988544
No 224
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=35.16 E-value=23 Score=21.58 Aligned_cols=24 Identities=8% Similarity=0.187 Sum_probs=20.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHhhH
Q psy8536 34 RKAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 34 ~r~~la~~~~l~~~~v~~WFqnrr 57 (186)
...+||..+|++...|..|..+++
T Consensus 23 tq~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 23 SLREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHTSS
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 357899999999999999997653
No 225
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=34.52 E-value=21 Score=21.47 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=16.6
Q ss_pred HHHHHHHcCCChhHHHHHH
Q psy8536 35 KAELANSLGLSERQVKIWF 53 (186)
Q Consensus 35 r~~la~~~~l~~~~v~~WF 53 (186)
..++|+.+|++...|+.|-
T Consensus 8 i~e~A~~~gvs~~tlR~ye 26 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWE 26 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 4578999999999999995
No 226
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=34.01 E-value=1e+02 Score=20.52 Aligned_cols=44 Identities=11% Similarity=0.032 Sum_probs=33.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHH
Q psy8536 7 KYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVK 50 (186)
Q Consensus 7 r~r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~ 50 (186)
+....+|.+++..|-..+.....+.......|+..+||....|.
T Consensus 2 ~~~~~lt~~e~~~l~~~~~~~~~~~~~~~~~l~~~tG~R~~E~~ 45 (170)
T 1aih_A 2 TELAFLYERDIYRLLAECDNSRNPDLGLIVRICLATGARWSEAE 45 (170)
T ss_dssp CCCCCCCHHHHHHHHHHHTTSSSTTHHHHHHHHHHHCCCHHHHH
T ss_pred CccccCCHHHHHHHHHHHhcccchhHHHHHHHHHHhCCcHHHHH
Confidence 34578999999999988877666666667778888888766554
No 227
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=33.97 E-value=85 Score=19.68 Aligned_cols=41 Identities=15% Similarity=0.270 Sum_probs=28.0
Q ss_pred CCCCCHHHHH-HHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHH
Q psy8536 9 RVVYSDQQRL-ELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQ 54 (186)
Q Consensus 9 r~~~t~~q~~-~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFq 54 (186)
+.+++.+... ++.+... .. ....++|+..||+..+|..|-.
T Consensus 30 ~rrWs~~~Kl~VV~~~~~-g~----~s~~e~arry~Is~s~i~~W~r 71 (95)
T 2jrt_A 30 TRRWVASRKAAVVKAVIH-GL----ITEREALDRYSLSEEEFALWRS 71 (95)
T ss_dssp CCCCCHHHHHHHHHHHHT-TS----SCHHHHHHHTTCCHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHc-CC----CCHHHHHHHhCCCHHHHHHHHH
Confidence 4567777654 4443333 22 3456789999999999999974
No 228
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=33.82 E-value=61 Score=18.16 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHcCC--ChhHHHHHH
Q psy8536 12 YSDQQRLELEKEFH-----YSRYITIRRKAELANSLGL--SERQVKIWF 53 (186)
Q Consensus 12 ~t~~q~~~L~~~f~-----~~~~p~~~~r~~la~~~~l--~~~~v~~WF 53 (186)
++.+++..|...|. .+.+.+..+-..+...+|. +...|...|
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 49 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELM 49 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 46788899999985 3456778888887777775 455555555
No 229
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=33.36 E-value=64 Score=22.90 Aligned_cols=44 Identities=25% Similarity=0.187 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHH
Q psy8536 10 VVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAK 59 (186)
Q Consensus 10 ~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~ 59 (186)
..+|..+.++|.-.... ....+||..++++++.|.....+=+.|
T Consensus 148 ~~LT~rE~~vL~~l~~g------~s~~eIa~~l~is~~TV~~hi~~l~~K 191 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEG------LTNKQIADRMFLAEKTVKNYVSRLLAK 191 (225)
T ss_dssp TTSCHHHHHHHHHHHTT------CCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCC------CCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 46888888888766543 346789999999999999887655544
No 230
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=32.96 E-value=40 Score=23.45 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCC----HHHHHHHHHHcCCChhHHHHHHHhh
Q psy8536 9 RVVYSDQQRLELEKEFHYSRYIT----IRRKAELANSLGLSERQVKIWFQNR 56 (186)
Q Consensus 9 r~~~t~~q~~~L~~~f~~~~~p~----~~~r~~la~~~~l~~~~v~~WFqnr 56 (186)
+..||.++.......-...-.|. .....++|+.+|++...+-.|-...
T Consensus 21 ~r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~~ 72 (155)
T 2ao9_A 21 KQKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTKN 72 (155)
T ss_dssp HTTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHHC
T ss_pred hhhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHcC
Confidence 34588888877543211110111 2467889999999999999998643
No 231
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=32.88 E-value=90 Score=20.85 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHcCCChhHHHHHHH
Q psy8536 12 YSDQQRLELEKEFHY----SRYITIRRKAELANSLGLSERQVKIWFQ 54 (186)
Q Consensus 12 ~t~~q~~~L~~~f~~----~~~p~~~~r~~la~~~~l~~~~v~~WFq 54 (186)
+|..++.+|-..+.. +.+|+. ..||..+|++...|....+
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~---~~LA~~~~~s~~~v~~~L~ 73 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTP---NQLQEGMSISVEECTNRLR 73 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCH---HHHHTTSSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCH---HHHHHHHCcCHHHHHHHHH
Confidence 566777777666552 556666 4699999999999998775
No 232
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=32.50 E-value=24 Score=20.75 Aligned_cols=23 Identities=35% Similarity=0.346 Sum_probs=19.8
Q ss_pred HHHHHHHcCCChhHHHHHHHhhH
Q psy8536 35 KAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 35 r~~la~~~~l~~~~v~~WFqnrr 57 (186)
..+||..+|++...|..|-.+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 57799999999999999987654
No 233
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=32.19 E-value=22 Score=20.76 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=19.3
Q ss_pred HHHHHHHcCCChhHHHHHHHhhH
Q psy8536 35 KAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 35 r~~la~~~~l~~~~v~~WFqnrr 57 (186)
..+||..+|++...|..|-.+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56799999999999999886553
No 234
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=32.18 E-value=75 Score=20.97 Aligned_cols=43 Identities=23% Similarity=0.409 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHcCCChhHHH-HH
Q psy8536 10 VVYSDQQRLELEKEFHY----SRYITIRRKAELANSLGLSERQVK-IW 52 (186)
Q Consensus 10 ~~~t~~q~~~L~~~f~~----~~~p~~~~r~~la~~~~l~~~~v~-~W 52 (186)
-.+|.+++..+++.|.. +.+.+..+-..+-...||+...+. ||
T Consensus 25 W~it~ee~~~y~~iF~~lD~~dG~Isg~elr~~~~~sgLp~~~L~~Iw 72 (121)
T 3fia_A 25 WAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIW 72 (121)
T ss_dssp SCCCHHHHHHHHHHHHHTCCBTTBEEHHHHHHHHGGGCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCeECHHHHHHHHHHcCCCHHHHHHHH
Confidence 35889999999999964 345667777777777899877665 44
No 235
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=31.63 E-value=83 Score=19.85 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCChhHHHHHH
Q psy8536 11 VYSDQQRLELEKEFHY-----SRYITIRRKAELANSLGLSERQVKIWF 53 (186)
Q Consensus 11 ~~t~~q~~~L~~~f~~-----~~~p~~~~r~~la~~~~l~~~~v~~WF 53 (186)
.++.++...|...|.. +.+.+..+...+....+++...|..+|
T Consensus 7 ~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~ 54 (111)
T 2kgr_A 7 AVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIW 54 (111)
T ss_dssp SSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHH
Confidence 4688899999999863 446777777776666778877777655
No 236
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=31.24 E-value=25 Score=20.70 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=19.9
Q ss_pred HHHHHHHHcCCChhHHHHHHHhhH
Q psy8536 34 RKAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 34 ~r~~la~~~~l~~~~v~~WFqnrr 57 (186)
...+||..+|++...|..|-.+++
T Consensus 29 tq~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 29 TQKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSS
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCC
Confidence 346899999999999999987653
No 237
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=31.11 E-value=82 Score=18.42 Aligned_cols=43 Identities=14% Similarity=0.229 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHcCC--ChhHHHHHH
Q psy8536 11 VYSDQQRLELEKEFH-----YSRYITIRRKAELANSLGL--SERQVKIWF 53 (186)
Q Consensus 11 ~~t~~q~~~L~~~f~-----~~~~p~~~~r~~la~~~~l--~~~~v~~WF 53 (186)
.++.+++..|...|. .+.+.+..+-..+...+|+ +...|...|
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~ 62 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAII 62 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 478889999999985 3457888888888888874 566777666
No 238
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=30.70 E-value=1.1e+02 Score=19.95 Aligned_cols=48 Identities=23% Similarity=0.324 Sum_probs=34.2
Q ss_pred CCCCCCCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHcCC--ChhHHHHHH
Q psy8536 6 DKYRVVYSDQQRLELEKEFH-----YSRYITIRRKAELANSLGL--SERQVKIWF 53 (186)
Q Consensus 6 rr~r~~~t~~q~~~L~~~f~-----~~~~p~~~~r~~la~~~~l--~~~~v~~WF 53 (186)
.+.+..++.+++..|+..|. .+.+.+..+-..+...+|+ +...|...|
T Consensus 16 ~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 70 (169)
T 3qrx_A 16 KKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMI 70 (169)
T ss_dssp ----CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCCCCHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34578999999999999996 3457888888888888875 455665544
No 239
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=30.63 E-value=1e+02 Score=19.39 Aligned_cols=43 Identities=5% Similarity=0.067 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHcCCChhHHHHHH
Q psy8536 11 VYSDQQRLELEKEFHY----SRYITIRRKAELANSLGLSERQVKIWF 53 (186)
Q Consensus 11 ~~t~~q~~~L~~~f~~----~~~p~~~~r~~la~~~~l~~~~v~~WF 53 (186)
.++.++...+...|.. +.+.+..+-..+-..+|++...+...+
T Consensus 8 ~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~~~el~~i~ 54 (106)
T 1eh2_A 8 AVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVW 54 (106)
T ss_dssp SSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCCHHHHHHHH
Confidence 4688999999999963 557888888888888899988877655
No 240
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=29.94 E-value=1.1e+02 Score=21.98 Aligned_cols=45 Identities=11% Similarity=0.072 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHH
Q psy8536 9 RVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAK 59 (186)
Q Consensus 9 r~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~ 59 (186)
...+|..++++|.-... ...-.++|..+|+++..|+....+-+.|
T Consensus 171 ~~~Lt~~e~~vl~~~~~------g~s~~eIa~~l~is~~tV~~~~~~~~~k 215 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAV------GKTMEEIADVEGVKYNSVRVKLREAMKR 215 (234)
T ss_dssp CCCCCHHHHHHHHHHTT------TCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 35689999999866432 2345788999999999999887665554
No 241
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=29.91 E-value=66 Score=22.81 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHH
Q psy8536 15 QQRLELEKEFHYSRYITIRRKAELANSLGLSERQVK 50 (186)
Q Consensus 15 ~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~ 50 (186)
.-+.+|...=....|.+......+|+.|||+..+|-
T Consensus 26 ~li~~L~~~Q~~~G~l~~~~~~~iA~~l~l~~~~V~ 61 (181)
T 3i9v_2 26 AIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVM 61 (181)
T ss_dssp GHHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhCcCHHHHH
Confidence 345555555455589999999999999999998875
No 242
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=29.90 E-value=43 Score=21.89 Aligned_cols=39 Identities=8% Similarity=0.097 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhH
Q psy8536 12 YSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 12 ~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr 57 (186)
++.+.+..|..... ....+||..+|++...|..|=.+++
T Consensus 71 ~~~~~l~~~R~~~g-------lsq~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 71 VAPEFIVKVRKKLS-------LTQKEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp CCHHHHHHHHHHTT-------CCHHHHHHHHCSCTTHHHHHHHTSS
T ss_pred CCHHHHHHHHHHcC-------CCHHHHHHHHCCCHHHHHHHHCCCC
Confidence 44455555544433 2345788889999999998887654
No 243
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=29.65 E-value=1.2e+02 Score=19.68 Aligned_cols=45 Identities=13% Similarity=0.258 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHh-----h-cCCCCHHHHHHHHHHcC--CChhHHHHHHH
Q psy8536 10 VVYSDQQRLELEKEFH-----Y-SRYITIRRKAELANSLG--LSERQVKIWFQ 54 (186)
Q Consensus 10 ~~~t~~q~~~L~~~f~-----~-~~~p~~~~r~~la~~~~--l~~~~v~~WFq 54 (186)
..++.+++..|...|. . +.+.+..+-..+...+| ++...|..+|.
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 62 (161)
T 1dtl_A 10 EQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMID 62 (161)
T ss_dssp GGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4689999999999985 2 55788888888888887 56677777663
No 244
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=29.05 E-value=28 Score=20.94 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=20.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHhhH
Q psy8536 34 RKAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 34 ~r~~la~~~~l~~~~v~~WFqnrr 57 (186)
...+||..+|++...|..|-.+++
T Consensus 32 sq~~lA~~~gis~~~is~~e~g~~ 55 (92)
T 1lmb_3 32 SQESVADKMGMGQSGVGALFNGIN 55 (92)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 357899999999999999997653
No 245
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=28.85 E-value=28 Score=24.39 Aligned_cols=38 Identities=11% Similarity=0.124 Sum_probs=31.1
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHH
Q psy8536 20 LEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAK 59 (186)
Q Consensus 20 L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~ 59 (186)
-...|.... .......||+..|++...|-..|.|+-.-
T Consensus 29 A~~lf~~~G--~~~s~~~IA~~aGvs~~tlY~~F~sK~~L 66 (215)
T 2hku_A 29 ATELFLEHG--EGVPITQICAAAGAHPNQVTYYYGSKERL 66 (215)
T ss_dssp HHHHHHHHC--TTSCHHHHHHHHTCCHHHHHHHHSSHHHH
T ss_pred HHHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 334477766 77888899999999999999999988654
No 246
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=28.43 E-value=34 Score=20.62 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=19.9
Q ss_pred HHHHHHHHcCCChhHHHHHHHhhH
Q psy8536 34 RKAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 34 ~r~~la~~~~l~~~~v~~WFqnrr 57 (186)
...+||..+|++...|..|..+++
T Consensus 28 sq~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 28 TQKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 356799999999999999987654
No 247
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=28.29 E-value=39 Score=20.75 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.5
Q ss_pred HHHHHHHHcCCChhHHHHHHHhhH
Q psy8536 34 RKAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 34 ~r~~la~~~~l~~~~v~~WFqnrr 57 (186)
...+||..+|++...|..|..+++
T Consensus 39 Tq~eLA~~~GiS~~tis~iE~G~~ 62 (88)
T 3t76_A 39 KKGELREAVGVSKSTFAKLGKNEN 62 (88)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 457899999999999999997754
No 248
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=28.01 E-value=48 Score=22.33 Aligned_cols=46 Identities=11% Similarity=0.002 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHH
Q psy8536 11 VYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKER 61 (186)
Q Consensus 11 ~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~ 61 (186)
.++..+..+|.-. |.....-.++|..+|+++..|+.....-|.+-+
T Consensus 93 ~Lp~~~r~vl~L~-----~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr 138 (157)
T 2lfw_A 93 RMTPLSRQALLLT-----AMEGFSPEDAAYLIEVDTSEVETLVTEALAEIE 138 (157)
T ss_dssp TSCTTHHHHHTTT-----SSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHH-----HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3455566655332 333445678999999999999988865444443
No 249
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=27.59 E-value=36 Score=19.08 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=16.8
Q ss_pred HHHHHHHcCCChhHHHHHH
Q psy8536 35 KAELANSLGLSERQVKIWF 53 (186)
Q Consensus 35 r~~la~~~~l~~~~v~~WF 53 (186)
..++|+.+|++...|..|.
T Consensus 16 ~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMV 34 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 4578999999999999887
No 250
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=27.56 E-value=44 Score=19.56 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=18.9
Q ss_pred HHHHHHHHcCCChhHHHHHHHh
Q psy8536 34 RKAELANSLGLSERQVKIWFQN 55 (186)
Q Consensus 34 ~r~~la~~~~l~~~~v~~WFqn 55 (186)
...+||..+|++...|..|-.+
T Consensus 25 tq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 25 SLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHcC
Confidence 3467999999999999999876
No 251
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=27.45 E-value=31 Score=20.23 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=19.5
Q ss_pred HHHHHHHHcCCChhHHHHHHHhh
Q psy8536 34 RKAELANSLGLSERQVKIWFQNR 56 (186)
Q Consensus 34 ~r~~la~~~~l~~~~v~~WFqnr 56 (186)
...+||..+|++...|..|-.++
T Consensus 26 sq~~lA~~~gis~~~i~~~e~g~ 48 (82)
T 3s8q_A 26 TQEDLAYKSNLDRTYISGIERNS 48 (82)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTC
T ss_pred CHHHHHHHhCcCHHHHHHHHCCC
Confidence 45689999999999999998665
No 252
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=27.11 E-value=1e+02 Score=20.58 Aligned_cols=28 Identities=29% Similarity=0.548 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHHcCCCh-----hHHHHHHHh
Q psy8536 28 RYITIRRKAELANSLGLSE-----RQVKIWFQN 55 (186)
Q Consensus 28 ~~p~~~~r~~la~~~~l~~-----~~v~~WFqn 55 (186)
--.+...|.+||.+||++. ....+|...
T Consensus 79 lDsSl~~RkeLA~eL~~~~~~~dSA~mNiwLHk 111 (130)
T 2gqb_A 79 IDSSLSARKELAKELGYSGDMNDSASMNIWLHK 111 (130)
T ss_dssp CCCSHHHHHHHHHHHTCCCSSCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Confidence 3467899999999999873 567789853
No 253
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=27.07 E-value=41 Score=18.89 Aligned_cols=24 Identities=8% Similarity=-0.015 Sum_probs=19.6
Q ss_pred HHHHHHHHcC--CChhHHHHHHHhhH
Q psy8536 34 RKAELANSLG--LSERQVKIWFQNRR 57 (186)
Q Consensus 34 ~r~~la~~~~--l~~~~v~~WFqnrr 57 (186)
...+||..+| ++...|..|-.+++
T Consensus 23 sq~~lA~~~g~~is~~~i~~~e~g~~ 48 (71)
T 2ewt_A 23 SLHGVEEKSQGRWKAVVVGSYERGDR 48 (71)
T ss_dssp CHHHHHHHTTTSSCHHHHHHHHHTCS
T ss_pred CHHHHHHHHCCcCCHHHHHHHHCCCC
Confidence 3567999999 99999999986543
No 254
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=26.97 E-value=71 Score=21.70 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=19.6
Q ss_pred HHHHHHcCCChhHHHHHHHhhHHHHH
Q psy8536 36 AELANSLGLSERQVKIWFQNRRAKER 61 (186)
Q Consensus 36 ~~la~~~~l~~~~v~~WFqnrr~~~~ 61 (186)
.++|..+|+++..|+.+...-+.+-+
T Consensus 155 ~eIA~~lgis~~tV~~~l~ra~~~Lr 180 (184)
T 2q1z_A 155 RELAAETGLPLGTIKSRIRLALDRLR 180 (184)
T ss_dssp CCSTTTCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 35688889999999988865555544
No 255
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=26.38 E-value=83 Score=20.34 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHH
Q psy8536 13 SDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQ 54 (186)
Q Consensus 13 t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFq 54 (186)
+.+|....+.....-.- +.....+||..+|+.+..+.-|+.
T Consensus 2 ~~~~~~l~~~i~~~~~~-~p~~~~~la~~~~~~~~~~~~~l~ 42 (121)
T 2pjp_A 2 SEEQQAIWQKAEPLFGD-EPWWVRDLAKETGTDEQAMRLTLR 42 (121)
T ss_dssp CHHHHHHHHHHGGGCSS-SCEEHHHHHHHTTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHH
Confidence 45555555555332221 223445899999999999999874
No 256
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=26.24 E-value=23 Score=24.40 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=32.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHH
Q psy8536 19 ELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAK 59 (186)
Q Consensus 19 ~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~ 59 (186)
.-...|....| . ....+||+..|++...|-..|.|+-.-
T Consensus 24 aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~~L 62 (199)
T 2rek_A 24 AAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRWGL 62 (199)
T ss_dssp HHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHHHH
Confidence 34445888888 5 688999999999999999999888544
No 257
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=25.96 E-value=1.3e+02 Score=20.86 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHH
Q psy8536 11 VYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAK 59 (186)
Q Consensus 11 ~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~ 59 (186)
.+|..+.++|.-..... ...+||..++++++.|..--.|=+.|
T Consensus 154 ~Lt~rE~~vl~~l~~g~------s~~~Ia~~l~is~~TV~~hi~~i~~K 196 (215)
T 1a04_A 154 QLTPRERDILKLIAQGL------PNKMIARRLDITESTVKVHVKHMLKK 196 (215)
T ss_dssp GSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 57888888887665532 46889999999999999877655555
No 258
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=25.92 E-value=94 Score=19.23 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=20.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHhh
Q psy8536 33 RRKAELANSLGLSERQVKIWFQNR 56 (186)
Q Consensus 33 ~~r~~la~~~~l~~~~v~~WFqnr 56 (186)
....+||..+|+++..+...|...
T Consensus 19 ~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 19 ITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Confidence 567789999999999999888643
No 259
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=25.74 E-value=30 Score=20.76 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=21.8
Q ss_pred HHHhhcCCCCHHHHHHHHHHcCCChhHHHHHH
Q psy8536 22 KEFHYSRYITIRRKAELANSLGLSERQVKIWF 53 (186)
Q Consensus 22 ~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WF 53 (186)
.....+.--+...-.+||+.+|++...|....
T Consensus 21 ~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L 52 (77)
T 1qgp_A 21 KFLEELGEGKATTAHDLSGKLGTPKKEINRVL 52 (77)
T ss_dssp HHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 44455553334566789999999999887443
No 260
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=25.12 E-value=34 Score=23.91 Aligned_cols=39 Identities=10% Similarity=0.105 Sum_probs=31.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHH
Q psy8536 20 LEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKE 60 (186)
Q Consensus 20 L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~ 60 (186)
-...|....|- ....+||+..|++...|-..|.|+-.-.
T Consensus 21 A~~lf~~~G~~--~s~~~IA~~agvs~~tiY~~F~sK~~L~ 59 (224)
T 1t33_A 21 ALAQFGEYGLH--ATTRDIAALAGQNIAAITYYFGSKEDLY 59 (224)
T ss_dssp HHHHHHHHGGG--SCHHHHHHHHTSCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHhcCCHHHHH
Confidence 33447887776 7888899999999999999999986543
No 261
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=24.58 E-value=50 Score=20.39 Aligned_cols=21 Identities=19% Similarity=0.544 Sum_probs=17.2
Q ss_pred HHHHHHHcCCChhHHHHHHHh
Q psy8536 35 KAELANSLGLSERQVKIWFQN 55 (186)
Q Consensus 35 r~~la~~~~l~~~~v~~WFqn 55 (186)
-..+|+.+|+++.+|-.|=.+
T Consensus 27 Q~~vAe~~GvdeStISR~k~~ 47 (83)
T 1zs4_A 27 TEKTAEAVGVDKSQISRWKRD 47 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHhCCCHHHHhhhhhh
Confidence 456899999999999987543
No 262
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=24.48 E-value=1.1e+02 Score=19.11 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHcCCChhHHHHHHHhh
Q psy8536 28 RYITIRRKAELANSLGLSERQVKIWFQNR 56 (186)
Q Consensus 28 ~~p~~~~r~~la~~~~l~~~~v~~WFqnr 56 (186)
++-......+||..+|++++.+...|...
T Consensus 19 ~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 19 NIEEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp CSSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 33333677889999999999999888543
No 263
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=24.42 E-value=43 Score=21.13 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=20.3
Q ss_pred HHHHHHHHcCCChhHHHHHHHhhH
Q psy8536 34 RKAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 34 ~r~~la~~~~l~~~~v~~WFqnrr 57 (186)
...+||..+|++...|..|-.+++
T Consensus 24 sq~~lA~~~gis~~~i~~~e~g~~ 47 (114)
T 3op9_A 24 KNHQIAELLNVQTRTVAYYMSGET 47 (114)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTSS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 356799999999999999997654
No 264
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=24.20 E-value=42 Score=21.31 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=17.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHH
Q psy8536 33 RRKAELANSLGLSERQVKIWFQ 54 (186)
Q Consensus 33 ~~r~~la~~~~l~~~~v~~WFq 54 (186)
.....+|..+|+++.+|-.|=.
T Consensus 24 ~gq~~vA~~iGV~~StISR~k~ 45 (97)
T 1xwr_A 24 LGTEKTAEAVGVDKSQISRWKR 45 (97)
T ss_dssp HCHHHHHHHHTCCTTTHHHHHH
T ss_pred HhHHHHHHHhCCCHHHHHHHHh
Confidence 3446789999999999999754
No 265
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=24.17 E-value=1.5e+02 Score=19.05 Aligned_cols=47 Identities=23% Similarity=0.388 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHcC--CChhHHHHHHH
Q psy8536 8 YRVVYSDQQRLELEKEFH-----YSRYITIRRKAELANSLG--LSERQVKIWFQ 54 (186)
Q Consensus 8 ~r~~~t~~q~~~L~~~f~-----~~~~p~~~~r~~la~~~~--l~~~~v~~WFq 54 (186)
..+.++.+++..|...|. .+.+.+..+-..+...+| ++...|...|.
T Consensus 6 ~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 59 (153)
T 2ovk_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLK 59 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 467899999999999996 345788888888777777 45566666654
No 266
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=24.09 E-value=40 Score=22.85 Aligned_cols=42 Identities=12% Similarity=-0.005 Sum_probs=33.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHH
Q psy8536 17 RLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKE 60 (186)
Q Consensus 17 ~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~ 60 (186)
+..-...|....|- .....||+..|++...|-..|.|+-.-.
T Consensus 15 l~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~sK~~L~ 56 (190)
T 3jsj_A 15 LEAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFESKDELL 56 (190)
T ss_dssp HHHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 34445558888877 8888999999999999999999886553
No 267
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=23.75 E-value=41 Score=20.74 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=19.0
Q ss_pred HHHHHHHcCCChhHHHHHHHhhH
Q psy8536 35 KAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 35 r~~la~~~~l~~~~v~~WFqnrr 57 (186)
..+||..+|++...|..|-.+++
T Consensus 46 q~elA~~lgvs~~~is~~E~G~~ 68 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQGRS 68 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHcCCC
Confidence 46799999999999999976543
No 268
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=23.61 E-value=61 Score=19.47 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHcCCChhHHHHHH
Q psy8536 28 RYITIRRKAELANSLGLSERQVKIWF 53 (186)
Q Consensus 28 ~~p~~~~r~~la~~~~l~~~~v~~WF 53 (186)
.|| ....+||+.+|++...|..-.
T Consensus 22 g~~--psv~EIa~~lgvS~~TVrr~L 45 (77)
T 2jt1_A 22 GAP--VKTRDIADAAGLSIYQVRLYL 45 (77)
T ss_dssp TSC--EEHHHHHHHHTCCHHHHHHHH
T ss_pred CCC--cCHHHHHHHHCCCHHHHHHHH
Confidence 465 567889999999987776433
No 269
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=23.21 E-value=41 Score=19.86 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=20.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHhhH
Q psy8536 34 RKAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 34 ~r~~la~~~~l~~~~v~~WFqnrr 57 (186)
...+||..+|++...|..|-.+++
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 456899999999999999987654
No 270
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=23.15 E-value=68 Score=18.41 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=19.9
Q ss_pred HHHHHHHcCCChhHHHHHHHhhH
Q psy8536 35 KAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 35 r~~la~~~~l~~~~v~~WFqnrr 57 (186)
..+||+.+|++...|-.++.++.
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999997664
No 271
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.11 E-value=1.5e+02 Score=21.71 Aligned_cols=46 Identities=22% Similarity=0.086 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHH
Q psy8536 10 VVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKER 61 (186)
Q Consensus 10 ~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~ 61 (186)
..++..++++|.-.+ .. ..-.++|+.+|+++..|+....+-+.+-+
T Consensus 196 ~~L~~~erevl~L~~--~G----~s~~EIA~~L~iS~~TVk~~l~ra~~kL~ 241 (258)
T 3clo_A 196 NILSEREKEILRCIR--KG----LSSKEIAATLYISVNTVNRHRQNILEKLS 241 (258)
T ss_dssp TSSCHHHHHHHHHHH--TT----CCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHH--cC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 368888888887764 22 34678899999999999988765555533
No 272
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=23.02 E-value=50 Score=23.82 Aligned_cols=40 Identities=18% Similarity=0.205 Sum_probs=29.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHH
Q psy8536 19 ELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAK 59 (186)
Q Consensus 19 ~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~ 59 (186)
.-.+.|....|- .....+||+..|++...|-..|.++-.-
T Consensus 51 AA~~lf~~~G~~-~~t~~~IA~~aGvs~~tlY~~F~sK~~L 90 (255)
T 3g1o_A 51 TAENLLEDRPLA-DISVDDLAKGAGISRPTFYFYFPSKEAV 90 (255)
T ss_dssp HHHHHHTTSCGG-GCCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHcCCc-cCcHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 333446666553 4567778999999999999999988654
No 273
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=22.97 E-value=1.2e+02 Score=22.48 Aligned_cols=44 Identities=25% Similarity=0.164 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHH
Q psy8536 10 VVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAK 59 (186)
Q Consensus 10 ~~~t~~q~~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~ 59 (186)
..+|..++++|.-... ...-.++|..+|++++.|+....|=+.|
T Consensus 196 ~~Lt~re~~vl~~~~~------G~s~~eIA~~l~is~~TV~~~~~~~~~k 239 (265)
T 3qp6_A 196 MPLSQREYDIFHWMSR------GKTNWEIATILNISERTVKFHVANVIRK 239 (265)
T ss_dssp CCCCHHHHHHHHHHHT------TCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 5789999999977743 2345788999999999999888665555
No 274
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=22.86 E-value=35 Score=20.85 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=19.2
Q ss_pred HHHHHHHcCCChhHHHHHHHhhH
Q psy8536 35 KAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 35 r~~la~~~~l~~~~v~~WFqnrr 57 (186)
..+||..+|++...|..|-.+++
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~ 42 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRS 42 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999886543
No 275
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=22.69 E-value=79 Score=18.84 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=20.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHHHh
Q psy8536 19 ELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLKK 66 (186)
Q Consensus 19 ~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~~~ 66 (186)
+++-.|+.||||+..--.. | -.|||.+|+..+..
T Consensus 20 iIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQrQ 53 (72)
T 3lph_A 20 LIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQ 53 (72)
T ss_dssp HHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHHH
Confidence 4455589999997532111 1 24778887766554
No 276
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=22.64 E-value=49 Score=21.03 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=16.6
Q ss_pred HHHHHHHcCCChhHHHHHH
Q psy8536 35 KAELANSLGLSERQVKIWF 53 (186)
Q Consensus 35 r~~la~~~~l~~~~v~~WF 53 (186)
..++|+.+|++.+.|+.|=
T Consensus 5 i~e~A~~~gvs~~tLR~ye 23 (109)
T 1r8d_A 5 VKQVAEISGVSIRTLHHYD 23 (109)
T ss_dssp HHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 3578999999999999995
No 277
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=22.51 E-value=1.7e+02 Score=19.09 Aligned_cols=45 Identities=9% Similarity=0.227 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHcCC---ChhHHHHHHHh
Q psy8536 11 VYSDQQRLELEKEFH-----YSRYITIRRKAELANSLGL---SERQVKIWFQN 55 (186)
Q Consensus 11 ~~t~~q~~~L~~~f~-----~~~~p~~~~r~~la~~~~l---~~~~v~~WFqn 55 (186)
.++..++..|...|. .+.+.+..+-..+...+|+ +...|...|.+
T Consensus 18 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~ 70 (166)
T 2mys_B 18 MFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKE 70 (166)
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 578899999999985 3557888888888888876 56677777753
No 278
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=22.51 E-value=50 Score=20.97 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=16.6
Q ss_pred HHHHHHHcCCChhHHHHHH
Q psy8536 35 KAELANSLGLSERQVKIWF 53 (186)
Q Consensus 35 r~~la~~~~l~~~~v~~WF 53 (186)
..++|+.+|++.+.|+.|=
T Consensus 4 i~e~A~~~gvs~~tLR~ye 22 (108)
T 2vz4_A 4 VGQVAGFAGVTVRTLHHYD 22 (108)
T ss_dssp HHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 3578999999999999995
No 279
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=21.82 E-value=52 Score=20.93 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=20.4
Q ss_pred HHHHHHHHcCCChhHHHHHHHhhH
Q psy8536 34 RKAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 34 ~r~~la~~~~l~~~~v~~WFqnrr 57 (186)
...+||..+|++...|..|-.+++
T Consensus 38 tq~elA~~~gis~~~is~~E~G~~ 61 (111)
T 3mlf_A 38 TQKELGDLFKVSSRTIQNMEKDST 61 (111)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHCCT
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCC
Confidence 356799999999999999998764
No 280
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=21.80 E-value=41 Score=15.90 Aligned_cols=13 Identities=23% Similarity=0.210 Sum_probs=7.9
Q ss_pred ccccchHHHHHHh
Q psy8536 169 RVVYSDQQRLELE 181 (186)
Q Consensus 169 r~~~~~~q~~~l~ 181 (186)
=|.|...|+.||-
T Consensus 6 vtrfdekqieell 18 (31)
T 4h62_V 6 VTRFDEKQIEELL 18 (31)
T ss_dssp ----CHHHHHHHH
T ss_pred cccccHHHHHHHH
Confidence 4678999999985
No 281
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=21.74 E-value=24 Score=25.16 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=37.3
Q ss_pred CCCCCCCCHHHH-HHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHHHH
Q psy8536 6 DKYRVVYSDQQR-LELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQL 64 (186)
Q Consensus 6 rr~r~~~t~~q~-~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~~~ 64 (186)
++.|...+.+++ ..-...|....|- ......||...|++...|-..|.|+-.-.....
T Consensus 19 ~~~r~~~tr~~Il~aA~~l~~~~G~~-~~s~~~IA~~aGvs~~tlY~~F~~K~~L~~a~~ 77 (211)
T 3fiw_A 19 FQGMTKMNRETVITEALDLLDEVGLD-GVSTRRLAKRLGVEQPSLYWYFRTKRDLLTAMA 77 (211)
T ss_dssp -----CCCHHHHHHHHHHHHHHHCGG-GCCHHHHHHHHTSCTHHHHTTCSSHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCcc-cCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHH
Confidence 344556666543 3445557766653 456778899999999999999998866644433
No 282
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=21.64 E-value=51 Score=19.66 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=20.0
Q ss_pred HHHHHHHHcCCChhHHHHHHHhhH
Q psy8536 34 RKAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 34 ~r~~la~~~~l~~~~v~~WFqnrr 57 (186)
...+||..+|++...|..|-.+++
T Consensus 29 tq~elA~~~gis~~~is~~E~G~~ 52 (86)
T 3eus_A 29 TQADLAERLDKPQSFVAKVETRER 52 (86)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTTSS
T ss_pred CHHHHHHHhCcCHHHHHHHHCCCC
Confidence 346799999999999999987654
No 283
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=21.34 E-value=51 Score=22.81 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=28.9
Q ss_pred HHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHH
Q psy8536 22 KEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAK 59 (186)
Q Consensus 22 ~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~ 59 (186)
..|....|- ......||+..|++...|-..|.|+-.-
T Consensus 28 ~l~~~~G~~-~~t~~~IA~~agvs~~t~Y~~F~sK~~L 64 (218)
T 3gzi_A 28 NLFIERPYA-QVSIREIASLAGTDPGLIRYYFGSKEKL 64 (218)
T ss_dssp HHHHTSCCS-CCCHHHHHHHHTSCTHHHHHHHSSHHHH
T ss_pred HHHHHCCCC-cCCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 337776665 4566678999999999999999988644
No 284
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=21.23 E-value=1.6e+02 Score=18.46 Aligned_cols=42 Identities=14% Similarity=0.311 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHcCC--ChhHHHHHH
Q psy8536 12 YSDQQRLELEKEFH-----YSRYITIRRKAELANSLGL--SERQVKIWF 53 (186)
Q Consensus 12 ~t~~q~~~L~~~f~-----~~~~p~~~~r~~la~~~~l--~~~~v~~WF 53 (186)
||.+|+..|...|. .+.+.+..+-..+...+|+ +...|...|
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 49 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMM 49 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCCCHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 68899999999996 3557888888888888875 444554444
No 285
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=21.17 E-value=58 Score=20.80 Aligned_cols=24 Identities=21% Similarity=0.122 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHh
Q psy8536 32 IRRKAELANSLGLSERQVKIWFQN 55 (186)
Q Consensus 32 ~~~r~~la~~~~l~~~~v~~WFqn 55 (186)
.....+||..+|++++.+...|..
T Consensus 23 ~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 23 EWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp CCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 456788999999999999998854
No 286
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=20.61 E-value=63 Score=19.70 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=20.1
Q ss_pred HHHHHHHHcCCChhH----HHHHHHhhH
Q psy8536 34 RKAELANSLGLSERQ----VKIWFQNRR 57 (186)
Q Consensus 34 ~r~~la~~~~l~~~~----v~~WFqnrr 57 (186)
...+||..+|++... |..|-.+++
T Consensus 16 sq~~lA~~~gis~~~~~~~is~~E~g~~ 43 (98)
T 3lfp_A 16 SQEKLGVLAGIDEASASARMNQYEKGKH 43 (98)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHTSS
T ss_pred CHHHHHHHhCCCcchhhhHHHHHHCCCC
Confidence 357899999999999 999987654
No 287
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=20.51 E-value=56 Score=22.19 Aligned_cols=37 Identities=19% Similarity=0.125 Sum_probs=28.9
Q ss_pred HHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHH
Q psy8536 22 KEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAK 59 (186)
Q Consensus 22 ~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~ 59 (186)
..|....|- ......||...|++...|-..|.|+-.-
T Consensus 28 ~l~~~~G~~-~~s~~~Ia~~agvs~~t~Y~~F~sK~~L 64 (206)
T 3kz9_A 28 EVFARRGIG-RGGHADIAEIAQVSVATVFNYFPTREDL 64 (206)
T ss_dssp HHHHHSCCS-SCCHHHHHHHHTSCHHHHHHHCCSHHHH
T ss_pred HHHHhcCcc-cccHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 337777654 4556678999999999999999988544
No 288
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=20.49 E-value=1.3e+02 Score=21.18 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHh---hcCCCCHHHHHHHHHHcCCChhHHHHHH
Q psy8536 11 VYSDQQRLELEKEFH---YSRYITIRRKAELANSLGLSERQVKIWF 53 (186)
Q Consensus 11 ~~t~~q~~~L~~~f~---~~~~p~~~~r~~la~~~~l~~~~v~~WF 53 (186)
.+|..|.++|+-..+ ...|| ....+||+.+||+...|..+.
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g~~--~s~~eia~~lgl~~~tv~~~l 45 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYP--PSVREIARRFRITPRGALLHL 45 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSC--CCHHHHHHHHTSCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHcCCCcHHHHHHH
Confidence 378889998887643 45555 446789999999977655433
No 289
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=20.36 E-value=72 Score=19.83 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=20.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHhh
Q psy8536 33 RRKAELANSLGLSERQVKIWFQNR 56 (186)
Q Consensus 33 ~~r~~la~~~~l~~~~v~~WFqnr 56 (186)
....+||..+|++++.+...|...
T Consensus 22 ~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 22 MSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 467789999999999999888544
No 290
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=20.29 E-value=1.8e+02 Score=18.62 Aligned_cols=46 Identities=13% Similarity=0.257 Sum_probs=35.7
Q ss_pred CCCCCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHcCC--ChhHHHHHH
Q psy8536 8 YRVVYSDQQRLELEKEFH-----YSRYITIRRKAELANSLGL--SERQVKIWF 53 (186)
Q Consensus 8 ~r~~~t~~q~~~L~~~f~-----~~~~p~~~~r~~la~~~~l--~~~~v~~WF 53 (186)
....++.+++..|...|. .+.+.+..+-..+...+|+ +...|...|
T Consensus 13 ~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~ 65 (161)
T 3fwb_A 13 LNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLI 65 (161)
T ss_dssp TTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 457899999999999996 3457888888888888874 566666655
No 291
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=20.24 E-value=47 Score=22.43 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=29.0
Q ss_pred HHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHH
Q psy8536 22 KEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAK 59 (186)
Q Consensus 22 ~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~ 59 (186)
..|... ......+||+..|++...|-..|.|+-.-
T Consensus 25 ~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L 59 (190)
T 2v57_A 25 LVLADH---PTAALGDIAAAAGVGRSTVHRYYPERTDL 59 (190)
T ss_dssp HHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 336555 77888999999999999999999988654
No 292
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=20.24 E-value=52 Score=20.43 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=19.7
Q ss_pred HHHHHHHHcCCChhHHHHHHHhhH
Q psy8536 34 RKAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 34 ~r~~la~~~~l~~~~v~~WFqnrr 57 (186)
...+||..+|++...|..|-.+++
T Consensus 43 tq~elA~~~gis~~~is~iE~G~~ 66 (99)
T 3g5g_A 43 TQEDLAYKSNLDRTYISGIERNSR 66 (99)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCS
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCC
Confidence 356899999999999999886653
No 293
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=20.18 E-value=1.4e+02 Score=17.31 Aligned_cols=42 Identities=21% Similarity=0.379 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHcC--CChhHHHHHH
Q psy8536 12 YSDQQRLELEKEFH-----YSRYITIRRKAELANSLG--LSERQVKIWF 53 (186)
Q Consensus 12 ~t~~q~~~L~~~f~-----~~~~p~~~~r~~la~~~~--l~~~~v~~WF 53 (186)
.+.++...|...|. .+.+.+..+...+...+| ++...|...|
T Consensus 3 ~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~ 51 (92)
T 2kn2_A 3 MDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMI 51 (92)
T ss_dssp CCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 34567777888874 345788888888888888 5667777666
No 294
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=20.14 E-value=34 Score=24.88 Aligned_cols=56 Identities=7% Similarity=-0.103 Sum_probs=35.6
Q ss_pred CCCCCCCCHHHH-HHHHHHHhhcCCCCHHHHHHHHHHcCCChhHHHHHHHhhHHHHHH
Q psy8536 6 DKYRVVYSDQQR-LELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERK 62 (186)
Q Consensus 6 rr~r~~~t~~q~-~~L~~~f~~~~~p~~~~r~~la~~~~l~~~~v~~WFqnrr~~~~~ 62 (186)
++.+...+.+++ ..-...|....|- ......||+.+|++...|-..|.|+-.-..-
T Consensus 10 r~~~~~~~r~~Il~aA~~l~~~~G~~-~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~~ 66 (237)
T 2hxo_A 10 ERRQEPLSRERIVGAAVELLDTVGER-GLTFRALAERLATGPGAIYWHITGKAELLGA 66 (237)
T ss_dssp ------CCHHHHHHHHHHHHHHTTTT-TCCHHHHHHHHTSCGGGGGGTCCCHHHHHHH
T ss_pred CCCCCccCHHHHHHHHHHHHHhcCcc-cCCHHHHHHHHCCChHHHHHhcCCHHHHHHH
Confidence 344455666543 3444557777654 4566778999999999999999988655433
No 295
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=20.03 E-value=54 Score=21.11 Aligned_cols=24 Identities=4% Similarity=0.113 Sum_probs=20.4
Q ss_pred HHHHHHHHcCCChhHHHHHHHhhH
Q psy8536 34 RKAELANSLGLSERQVKIWFQNRR 57 (186)
Q Consensus 34 ~r~~la~~~~l~~~~v~~WFqnrr 57 (186)
...+||..+|++...|..|-.+++
T Consensus 27 sq~~lA~~~gis~~~is~~E~g~~ 50 (126)
T 3ivp_A 27 TREQVGAMIEIDPRYLTNIENKGQ 50 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHSCC
T ss_pred CHHHHHHHhCcCHHHHHHHHCCCC
Confidence 356899999999999999997764
Done!