RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8536
(186 letters)
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 74.5 bits (183), Expect = 7e-19
Identities = 35/69 (50%), Positives = 45/69 (65%)
Query: 1 KTRTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKE 60
R+ K R Y+ Q LELEKEF ++ Y+T R+ E+A L L+ERQVKIWFQNRR K
Sbjct: 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKM 68
Query: 61 RKQLKKREE 69
+K K R +
Sbjct: 69 KKINKDRAK 77
Score = 25.9 bits (57), Expect = 0.92
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 161 KTRTKDKYRVVYSDQQRLELEKEFHY 186
R+ K R Y+ Q LELEKEF +
Sbjct: 9 HARSTRKKRCPYTKHQTLELEKEFLF 34
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 71.0 bits (174), Expect = 1e-17
Identities = 33/55 (60%), Positives = 45/55 (81%)
Query: 9 RVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63
R Y+ Q LELEKEFH++RY+T RR+ E+A++L L+ERQ+KIWFQNRR K +K+
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 55
Score = 24.4 bits (53), Expect = 2.7
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 169 RVVYSDQQRLELEKEFHY 186
R Y+ Q LELEKEFH+
Sbjct: 1 RQTYTRYQTLELEKEFHF 18
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 70.2 bits (172), Expect = 3e-17
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 7 KYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLKK 66
+ R ++ +Q LEKEF + Y + + LA + L E ++++WF NRRAK R++ K
Sbjct: 3 RNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 62
Query: 67 REE 69
R +
Sbjct: 63 RNQ 65
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 65.7 bits (160), Expect = 1e-15
Identities = 26/56 (46%), Positives = 40/56 (71%)
Query: 7 KYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERK 62
K R+ YS Q ELE+E+ +++IT ++ +++ + LSERQ+ IWFQNRR KE+K
Sbjct: 3 KKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
Score = 23.3 bits (50), Expect = 6.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 167 KYRVVYSDQQRLELEKEFHY 186
K R+ YS Q ELE+E+
Sbjct: 3 KKRIPYSKGQLRELEREYAA 22
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 66.6 bits (162), Expect = 1e-15
Identities = 28/66 (42%), Positives = 46/66 (69%)
Query: 1 KTRTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKE 60
+ R ++ +Q ELEKEFH+++Y++ R+ E+A +L L+E QVKIWFQNRR K+
Sbjct: 23 GLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQ 82
Query: 61 RKQLKK 66
+K+ ++
Sbjct: 83 KKRERE 88
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 65.3 bits (159), Expect = 1e-15
Identities = 26/53 (49%), Positives = 40/53 (75%)
Query: 7 KYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAK 59
+ R +S +Q L++EF+ +RY+T RR+ +L++ LGL+E Q+KIWFQN RAK
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
Score = 24.1 bits (52), Expect = 3.0
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 167 KYRVVYSDQQRLELEKEFH 185
+ R +S +Q L++EF+
Sbjct: 1 RPRTAFSSEQLARLKREFN 19
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 63.4 bits (154), Expect = 1e-14
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 7 KYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLKK 66
+ R ++ Q ELE+ F RY+T R A+L+ L L QVKIWF+NRR + + Q +
Sbjct: 3 RTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 62
Query: 67 REE 69
++
Sbjct: 63 HKD 65
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 62.4 bits (152), Expect = 2e-14
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 13 SDQQRLELEKEF-HYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERK 62
+ Q LEK F +++ +R L+ L R ++ WF+ RR +E+
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 62.6 bits (152), Expect = 2e-14
Identities = 25/57 (43%), Positives = 37/57 (64%)
Query: 7 KYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63
+YR ++ Q LEKEF+ Y++ R+ ELA L L E +K+WFQNRR K+++Q
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 57
Score = 22.9 bits (49), Expect = 7.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 167 KYRVVYSDQQRLELEKEFH 185
+YR ++ Q LEKEF+
Sbjct: 1 RYRTAFTRDQLGRLEKEFY 19
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 62.5 bits (152), Expect = 2e-14
Identities = 28/54 (51%), Positives = 38/54 (70%)
Query: 9 RVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERK 62
+V +S+ Q +ELEK+F +Y++ + LA L LSERQVK WFQNRRAK R+
Sbjct: 4 QVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 62.2 bits (151), Expect = 3e-14
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 9 RVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRR 57
R+V++D QR L F ++ + + ++ LGL V +F N R
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
Score = 22.9 bits (49), Expect = 6.6
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 169 RVVYSDQQRLELEKEFH 185
R+V++D QR L F
Sbjct: 2 RLVFTDVQRRTLHAIFK 18
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 62.8 bits (152), Expect = 3e-14
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 1 KTRTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKE 60
K K RV+++ Q ELE+ F RY++ + LA+ + L+ QVKIWFQN R K
Sbjct: 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKT 64
Query: 61 RKQLKKRE 68
++ ++
Sbjct: 65 KRAQNEKG 72
Score = 25.8 bits (56), Expect = 1.3
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 161 KTRTKDKYRVVYSDQQRLELEKEFHY 186
K K RV+++ Q ELE+ F
Sbjct: 5 LPNKKRKRRVLFTKAQTYELERRFRQ 30
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 61.3 bits (149), Expect = 6e-14
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 7 KYRVVYSDQQRLELEKEF-HYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKER 61
K V + LEK F ++Y +R L+ L S R+++ WF++RR +++
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 61.0 bits (148), Expect = 8e-14
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 7 KYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63
+ R V +++Q L + + K +L GLS R +++WFQN+R K++K+
Sbjct: 5 RVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 60.7 bits (147), Expect = 1e-13
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 5 KDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQL 64
+ K RV++S Q ELE+ F +Y++ + LA+ + L+ QVKIWFQN R K ++Q
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61
Query: 65 KKRE 68
K +
Sbjct: 62 KDKA 65
Score = 23.0 bits (49), Expect = 9.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 165 KDKYRVVYSDQQRLELEKEFHY 186
+ K RV++S Q ELE+ F
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQ 23
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 59.9 bits (145), Expect = 2e-13
Identities = 27/56 (48%), Positives = 40/56 (71%)
Query: 7 KYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERK 62
K R ++ Q L LE++F +Y++I +AE ++SL L+E QVKIWFQNRRAK ++
Sbjct: 2 KPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
Score = 23.0 bits (49), Expect = 8.2
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 167 KYRVVYSDQQRLELEKEFH 185
K R ++ Q L LE++F
Sbjct: 2 KPRTPFTTAQLLALERKFR 20
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 59.5 bits (144), Expect = 3e-13
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 7 KYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLK 65
+ R +S Q ELE+ F ++Y I + ELA L+E ++++WFQNRRA+ RKQ
Sbjct: 4 RSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 62
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 59.2 bits (143), Expect = 4e-13
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 7 KYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63
+ R ++ QQ +LE F +RY + + E+A L+E +V++WF+NRRAK RK+
Sbjct: 3 RQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 59
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 58.9 bits (142), Expect = 8e-13
Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 15/74 (20%)
Query: 7 KYRVVYSDQQRLELEKEFHYSRYITIRRKAELAN---------------SLGLSERQVKI 51
R + + +E F+ ++Y ++ E+AN ++ +V
Sbjct: 2 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 61
Query: 52 WFQNRRAKERKQLK 65
WF NRR + +++
Sbjct: 62 WFANRRKEIKRRAN 75
Score = 23.9 bits (51), Expect = 5.4
Identities = 3/20 (15%), Positives = 7/20 (35%)
Query: 167 KYRVVYSDQQRLELEKEFHY 186
R + + +E F+
Sbjct: 2 GSRFTWRKECLAVMESYFNE 21
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 57.6 bits (139), Expect = 1e-12
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 9 RVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKER 61
+ S Q R LE+ F + + + K E+A G++ QV++WF N+R + +
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 57.6 bits (139), Expect = 2e-12
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 7 KYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63
K R S + LE+ F + + +A L L + V++WF NRR +E++
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 57
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 57.3 bits (138), Expect = 2e-12
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 7 KYRVVYSDQQRLELEKEFHYS-RYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLK 65
+ ++ Q LE F+ ++ +A GL+E Q + WF+ R A+ R+
Sbjct: 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62
Query: 66 KREE 69
E
Sbjct: 63 LPSE 66
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 56.5 bits (136), Expect = 6e-12
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 7 KYRVVYSDQQRLELEK---EFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63
+ R ++ Q L + + Y + K ELA G++ QV WF N+R + +K
Sbjct: 3 RKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 62
Query: 64 LKKREE 69
+ K +E
Sbjct: 63 IGKFQE 68
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 55.8 bits (134), Expect = 1e-11
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 2 TRTKDKYRVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKER 61
+ + + R ++ R LE F ++++ +AN LGL + V++WF NRR K +
Sbjct: 5 VQARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGK 64
Query: 62 KQ 63
+
Sbjct: 65 RS 66
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 54.8 bits (132), Expect = 2e-11
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 12 YSDQQRLELEKEFHYSR---YITIRRKAELANSLGLSERQVKIWFQNRRAKERK 62
++ + LE F + Y+ + L + LS Q+K W NRR KE+
Sbjct: 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 54.6 bits (131), Expect = 2e-11
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 9 RVVYSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63
R R+ LEK F ++ T +A L + + +++WF NRR KE++
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 56
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 53.6 bits (129), Expect = 6e-11
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 3/59 (5%)
Query: 7 KYRVVYSDQQRLELEKEF---HYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERK 62
R V + Y T K ++A L+ QV WF N R + +
Sbjct: 4 NKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 62
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 52.7 bits (126), Expect = 2e-10
Identities = 8/67 (11%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 1 KTRTKDKYRVVYSDQQRLELEKEFHYSRYITIR----RKAELANSLGLSERQVKIWFQNR 56
T ++R ++ +Q+ ++ + + + G+ + +KIW N
Sbjct: 13 SGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNN 72
Query: 57 RAKERKQ 63
+
Sbjct: 73 KNSGPSS 79
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 50.1 bits (119), Expect = 2e-09
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 7 KYRVVYSDQQRLELEKEFH-YSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQ 63
+ R S + L+ H Y L+ L L + + +FQN+R +
Sbjct: 9 RSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHS 66
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 49.3 bits (117), Expect = 4e-09
Identities = 12/57 (21%), Positives = 24/57 (42%)
Query: 12 YSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLKKRE 68
+ +Q L+ F S +T L L+ R++ WF ++ + + +K E
Sbjct: 11 KTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKME 67
Score = 28.2 bits (62), Expect = 0.18
Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 54 QNRRAKERKQLKKREEVVIKDPSKDLFLSNKV--MYTYLVFQVKIWFQNRRAKERKQLKK 111
Q + K +QL+ + + N++ ++ WF ++ + + +K
Sbjct: 6 QKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEK 65
Query: 112 RE 113
E
Sbjct: 66 ME 67
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 47.1 bits (111), Expect = 2e-08
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 21/78 (26%)
Query: 9 RVVYSDQQRLELEKEFHYSRYITIRRKAELANSL---------------------GLSER 47
R + + L + + + + + L ++E
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 48 QVKIWFQNRRAKERKQLK 65
+V WF NRR +E + K
Sbjct: 61 RVYNWFANRRKEEAFRHK 78
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 43.2 bits (101), Expect = 6e-07
Identities = 12/65 (18%), Positives = 22/65 (33%)
Query: 12 YSDQQRLELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLKKREEVV 71
+ +Q L+ F ++ +L GL ++ WF + R + K
Sbjct: 10 KTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKWFRDN 69
Query: 72 IKDPS 76
PS
Sbjct: 70 ASGPS 74
Score = 28.2 bits (62), Expect = 0.16
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 2/70 (2%)
Query: 54 QNRRAKERKQLKKREEVVIKDPSKDLFLSNKVMY--TYLVFQVKIWFQNRRAKERKQLKK 111
+ + K ++QL + ++ K+ ++ WF + R + K
Sbjct: 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64
Query: 112 REEVVIKDPS 121
PS
Sbjct: 65 WFRDNASGPS 74
>d2hq2a1 e.62.1.1 (A:1-337) Heme oxygenase ChuS {Escherichia coli
O157:H7 [TaxId: 83334]}
Length = 337
Score = 25.9 bits (57), Expect = 3.0
Identities = 5/31 (16%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 25 HYSRYITIR------RKAELANSLGLSERQV 49
HY+R++ ++ ++A + + E ++
Sbjct: 3 HYTRWLELKEQNPGKYARDIAGLMNIREAEL 33
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus
thermophilus [TaxId: 274]}
Length = 1504
Score = 24.8 bits (53), Expect = 8.4
Identities = 18/106 (16%), Positives = 36/106 (33%)
Query: 19 ELEKEFHYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLKKREEVVIKDPSKD 78
ELE+ ++S+YI + K + N + + +RQ+ + R + KQ + KD
Sbjct: 121 ELEQVLYFSKYIVLDPKGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKD 180
Query: 79 LFLSNKVMYTYLVFQVKIWFQNRRAKERKQLKKREEVVIKDPSKDL 124
K ++ R+ + + L
Sbjct: 181 GEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPL 226
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia
coli [TaxId: 562]}
Length = 68
Score = 23.1 bits (50), Expect = 9.1
Identities = 5/38 (13%), Positives = 12/38 (31%)
Query: 28 RYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQLK 65
R + E+A + V+ R +++
Sbjct: 30 RELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.364
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 674,787
Number of extensions: 30814
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 97
Length of query: 186
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,309,196
Effective search space: 138774776
Effective search space used: 138774776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)