BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8537
         (102 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CS4|A Chain A, Solution Structure Of N-Terminal Domain Of Chromosome 12
          Open Reading Frame 2
          Length = 95

 Score = 92.0 bits (227), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 56/72 (77%), Gaps = 1/72 (1%)

Query: 1  MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHP- 59
          MELKVWV+G+Q+IV GVTE TTCQ++V ALA A G+TGRYTLIE++R+ ER L P ++P 
Sbjct: 8  MELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHLAPHENPI 67

Query: 60 IKLIKFSHKFTD 71
          I L K+    +D
Sbjct: 68 ISLNKWGQYASD 79


>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
          Length = 218

 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 7  VEGMQKIVSGVTESTTCQDIVFALAHATGKTGRY-TLIERFRNNERLLTPQDHPIKLIKF 65
          VEG+ KIV+G     + Q++V    H+ G  G Y T   ++  N  + T + +P +  ++
Sbjct: 34 VEGINKIVTGNLLELSEQELVDCDKHSYGCKGGYQTTSLQYVANNGVHTSKVYPYQAKQY 93

Query: 66 SHKFTD 71
            + TD
Sbjct: 94 KCRATD 99


>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
 pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
          Length = 813

 Score = 26.6 bits (57), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 1   MELKVW--VEGMQKIVSGVTESTTCQ--DIVFALAHATGKTGRYTLIERFRNN 49
           +EL  W   +G   I  G T  T  Q  D+V A+A    K   Y +I  F N+
Sbjct: 367 LELDCWDGKDGEPIITHGFTMCTEVQFKDVVHAIAECAFKVSEYPVILSFENH 419


>pdb|3QR0|A Chain A, Crystal Structure Of S. Officinalis Plc21
          Length = 816

 Score = 26.6 bits (57), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 1   MELKVW--VEGMQKIVSGVTESTTC--QDIVFALAHATGKTGRYTLIERFRNN 49
           +EL  W   +G   I  G T  T    +D+V+A+A +  K   Y +I  F N+
Sbjct: 367 LELDCWDGKDGEPIITHGFTMCTEVLFKDVVYAIAESAFKVSDYPVILSFENH 419


>pdb|3TC9|A Chain A, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476)
           From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A
           Resolution
 pdb|3TC9|B Chain B, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476)
           From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A
           Resolution
          Length = 430

 Score = 26.2 bits (56), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 48  NNERLLTPQDHPIKLIKFSHKFTDNTSGGEKSVKTI 83
           +N   L  + HP +LI F  ++      G   V+TI
Sbjct: 149 HNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTI 184


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,239,432
Number of Sequences: 62578
Number of extensions: 120850
Number of successful extensions: 262
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 7
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)