Query psy8537
Match_columns 102
No_of_seqs 92 out of 94
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 21:26:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8537.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8537hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1574|consensus 100.0 4.3E-34 9.4E-39 236.2 6.6 69 1-69 6-74 (375)
2 smart00314 RA Ras association 99.3 5E-12 1.1E-16 82.7 7.2 67 2-68 4-77 (90)
3 PF00788 RA: Ras association ( 99.2 4.3E-11 9.4E-16 76.6 6.8 69 2-70 4-81 (93)
4 cd01768 RA RA (Ras-associating 99.1 3E-10 6.5E-15 73.7 7.4 69 3-71 2-78 (87)
5 cd01781 AF6_RA_repeat2 Ubiquit 98.2 3.2E-06 7E-11 59.8 5.1 53 17-69 22-89 (100)
6 cd01783 DAGK_delta_RA Ubiquiti 98.0 7.9E-06 1.7E-10 57.7 4.7 51 17-67 23-80 (97)
7 cd01775 CYR1_RA Ubiquitin doma 97.3 0.00058 1.3E-08 48.5 5.2 49 17-65 19-69 (97)
8 cd01779 Myosin_IXb_RA ubitquit 97.3 0.00037 8.1E-09 50.1 4.2 59 17-75 31-93 (105)
9 cd01778 RASSF1_RA Ubiquitin-li 97.3 0.00041 8.8E-09 49.0 4.2 52 17-68 23-81 (96)
10 cd01787 GRB7_RA RA (RAS-associ 97.0 0.0021 4.6E-08 44.5 5.4 65 3-68 5-74 (85)
11 cd01784 rasfadin_RA Ubiquitin- 96.7 0.0028 6.1E-08 44.3 4.4 51 17-67 19-73 (87)
12 cd01782 AF6_RA_repeat1 Ubiquit 96.3 0.0096 2.1E-07 43.4 5.2 60 9-68 31-100 (112)
13 cd01786 STE50_RA Ubiquitin-lik 92.6 0.27 5.8E-06 35.2 4.6 56 17-72 31-90 (98)
14 smart00295 B41 Band 4.1 homolo 92.1 0.9 2E-05 32.1 6.8 62 2-63 5-70 (207)
15 KOG3751|consensus 91.8 0.19 4E-06 45.2 3.6 67 2-68 190-260 (622)
16 cd01780 PLC_epsilon_RA Ubiquit 88.8 0.95 2.1E-05 32.1 4.4 61 10-70 12-86 (93)
17 cd01777 SNX27_RA Ubiquitin dom 85.8 2.9 6.3E-05 29.2 5.4 62 1-62 2-68 (87)
18 smart00666 PB1 PB1 domain. Pho 82.2 9.1 0.0002 24.0 6.2 47 2-51 3-50 (81)
19 cd01776 Rin1_RA Ubiquitin doma 81.5 3.4 7.5E-05 29.1 4.3 50 17-66 20-71 (87)
20 PF03992 ABM: Antibiotic biosy 77.5 0.98 2.1E-05 27.0 0.5 17 34-50 45-61 (78)
21 COG1359 Uncharacterized conser 74.4 1.7 3.7E-05 29.1 1.1 16 34-49 46-61 (100)
22 PRK10486 autoinducer-2 (AI-2) 74.3 1.9 4E-05 28.7 1.3 16 34-49 44-59 (96)
23 cd00196 UBQ Ubiquitin-like pro 66.7 16 0.00036 18.9 4.0 37 11-47 8-45 (69)
24 KOG4239|consensus 59.6 13 0.00028 31.7 3.7 50 16-66 219-275 (348)
25 smart00693 DysFN Dysferlin dom 55.9 5.9 0.00013 25.1 0.9 27 67-93 29-56 (62)
26 KOG1892|consensus 54.9 22 0.00047 35.1 4.7 51 17-67 254-310 (1629)
27 PRK06488 sulfur carrier protei 53.8 44 0.00095 20.5 4.6 35 3-45 1-35 (65)
28 PF14259 RRM_6: RNA recognitio 53.6 15 0.00032 21.7 2.4 30 13-43 2-31 (70)
29 PF11976 Rad60-SLD: Ubiquitin- 51.5 53 0.0011 20.0 4.7 38 1-38 1-38 (72)
30 KOG1759|consensus 51.1 22 0.00048 26.0 3.3 46 16-62 14-59 (115)
31 PF11211 DUF2997: Protein of u 49.4 44 0.00095 20.6 4.0 36 1-37 1-37 (48)
32 cd05992 PB1 The PB1 domain is 48.8 62 0.0013 19.9 5.6 63 2-65 2-67 (81)
33 cd01785 PDZ_GEF_RA Ubiquitin-l 47.3 69 0.0015 22.5 5.1 53 3-56 5-66 (85)
34 PF00076 RRM_1: RNA recognitio 42.9 50 0.0011 18.8 3.5 24 13-37 2-25 (70)
35 PF00564 PB1: PB1 domain; Int 39.4 93 0.002 19.2 5.5 48 2-51 3-51 (84)
36 KOG1892|consensus 39.1 36 0.00079 33.7 3.6 53 17-69 61-119 (1629)
37 PRK06944 sulfur carrier protei 37.7 51 0.0011 19.9 3.0 25 4-31 2-26 (65)
38 cd01805 RAD23_N Ubiquitin-like 37.3 99 0.0021 18.9 5.1 50 1-54 1-53 (77)
39 PF03990 DUF348: Domain of unk 36.9 76 0.0016 18.4 3.6 26 2-29 1-26 (43)
40 PLN02799 Molybdopterin synthas 35.3 16 0.00035 23.2 0.5 34 1-34 2-42 (82)
41 PF09379 FERM_N: FERM N-termin 35.2 1.1E+02 0.0024 18.8 6.7 57 7-64 4-64 (80)
42 PRK05863 sulfur carrier protei 35.1 1E+02 0.0022 19.1 4.2 36 3-45 1-36 (65)
43 PF14468 DUF4427: Protein of u 35.1 21 0.00045 26.9 1.1 45 24-68 47-95 (132)
44 PRK14647 hypothetical protein; 32.8 43 0.00093 24.7 2.5 49 2-55 38-90 (159)
45 PF01187 MIF: Macrophage migra 32.1 65 0.0014 21.9 3.1 47 19-65 15-61 (114)
46 PF14847 Ras_bdg_2: Ras-bindin 32.0 1.2E+02 0.0026 21.4 4.5 30 8-38 9-38 (105)
47 PRK05659 sulfur carrier protei 31.4 1.2E+02 0.0027 18.3 4.6 34 4-44 2-35 (66)
48 PRK08364 sulfur carrier protei 30.5 1.4E+02 0.0031 18.7 4.9 37 3-44 5-43 (70)
49 PRK07696 sulfur carrier protei 28.2 1.6E+02 0.0034 18.5 4.6 44 3-56 1-45 (67)
50 PRK14644 hypothetical protein; 28.0 79 0.0017 23.0 3.2 44 3-54 29-76 (136)
51 PF08000 bPH_1: Bacterial PH d 27.8 94 0.002 22.4 3.5 31 2-32 90-121 (124)
52 cd01807 GDX_N ubiquitin-like d 27.4 1.6E+02 0.0034 18.2 4.7 45 1-48 1-47 (74)
53 PRK14638 hypothetical protein; 26.4 68 0.0015 23.6 2.6 56 2-69 38-98 (150)
54 KOG0130|consensus 26.3 1.2E+02 0.0025 23.7 3.9 39 7-45 70-121 (170)
55 PF11863 DUF3383: Protein of u 26.1 1.9E+02 0.0041 24.8 5.6 47 3-49 110-167 (481)
56 KOG3784|consensus 26.0 2E+02 0.0044 25.2 5.7 63 2-64 109-181 (407)
57 PRK06083 sulfur carrier protei 25.0 2.2E+02 0.0048 19.1 5.1 38 1-45 17-54 (84)
58 PRK14635 hypothetical protein; 24.9 71 0.0015 23.6 2.5 51 3-54 36-89 (162)
59 PRK14632 hypothetical protein; 24.7 79 0.0017 23.8 2.7 49 2-55 37-89 (172)
60 KOG1117|consensus 24.5 1.6E+02 0.0035 28.9 5.2 69 2-70 928-1005(1186)
61 PTZ00397 macrophage migration 23.8 1.1E+02 0.0024 20.7 3.1 47 19-65 17-63 (116)
62 PRK14640 hypothetical protein; 23.8 1.6E+02 0.0035 21.5 4.2 56 2-69 36-95 (152)
63 KOG3669|consensus 23.7 50 0.0011 30.6 1.7 52 37-96 59-114 (705)
64 PRK14639 hypothetical protein; 23.3 1.7E+02 0.0037 21.2 4.2 49 2-55 27-79 (140)
65 PRK14633 hypothetical protein; 23.1 1.9E+02 0.0041 21.2 4.4 56 2-69 33-92 (150)
66 smart00360 RRM RNA recognition 22.3 1.4E+02 0.0031 16.0 3.1 19 14-32 1-19 (71)
67 cd00754 MoaD Ubiquitin domain 20.7 2.2E+02 0.0047 17.4 3.8 23 13-35 18-40 (80)
No 1
>KOG1574|consensus
Probab=100.00 E-value=4.3e-34 Score=236.23 Aligned_cols=69 Identities=54% Similarity=0.972 Sum_probs=64.8
Q ss_pred CeEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCCCceEEEEeecCceeecCCCCcchhhhhhcccC
Q psy8537 1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPIKLIKFSHKF 69 (102)
Q Consensus 1 MELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~grY~LVEKwRg~ER~L~p~e~pl~iL~~W~aw 69 (102)
|||+|||||+||+|||||++|||+|||+|||+++|++|+|||||||||+||+|||++||++.|..|++.
T Consensus 6 melkVWVdgeer~VcGvt~~TTCqdVV~ALa~aigq~Grf~iVEKwR~~ER~L~p~erpl~ll~~wge~ 74 (375)
T KOG1574|consen 6 MELKVWVDGEERIVCGVTERTTCQDVVIALAQAIGQKGRFTIVEKWRGYERHLAPSERPLKLLAKWGEY 74 (375)
T ss_pred ceEEEEeccceeeeecccCCccHHHHHHHHHHHhCCCCceEEeehhcccccccCCccCHHHHHHhhhhc
Confidence 899999999999999999999999999999999999999999999999999999998888776665554
No 2
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=99.34 E-value=5e-12 Score=82.74 Aligned_cols=67 Identities=25% Similarity=0.398 Sum_probs=59.3
Q ss_pred eEeEEEcC---eeEEEeccCCcccHHHHHHHHHhhcCC---CCceEEEEee-cCceeecCCCCcchhhhhhccc
Q psy8537 2 ELKVWVEG---MQKIVSGVTESTTCQDIVFALAHATGK---TGRYTLIERF-RNNERLLTPQDHPIKLIKFSHK 68 (102)
Q Consensus 2 ELkVWV~G---~eR~V~GvT~~TTC~DVV~ALaq~~G~---~grY~LVEKw-Rg~ER~L~p~e~pl~iL~~W~a 68 (102)
.|+|+.+. ..-....|++.|||+|||.++++..+- |.+|+|+|.+ .+.||.|+++|+|++++..|+.
T Consensus 4 ~lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~e~Pl~~~~~~~~ 77 (90)
T smart00314 4 VLRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDDENPLQLQKLWPR 77 (90)
T ss_pred EEEEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCCCcceEehhhCCC
Confidence 47888876 777788899999999999999997653 6789999999 9999999999999999999853
No 3
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=99.22 E-value=4.3e-11 Score=76.65 Aligned_cols=69 Identities=22% Similarity=0.248 Sum_probs=61.2
Q ss_pred eEeEEEcCee----EEEeccCCcccHHHHHHHHHhhcC---CCCceEE--EEeecCceeecCCCCcchhhhhhcccCc
Q psy8537 2 ELKVWVEGMQ----KIVSGVTESTTCQDIVFALAHATG---KTGRYTL--IERFRNNERLLTPQDHPIKLIKFSHKFT 70 (102)
Q Consensus 2 ELkVWV~G~e----R~V~GvT~~TTC~DVV~ALaq~~G---~~grY~L--VEKwRg~ER~L~p~e~pl~iL~~W~awg 70 (102)
-|+|+..... -....|+..|||+|||.++++..| .|..|+| ++...+.||.|+++|+|+.++..|...+
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl~i~~~~~~~~ 81 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPLQIQLQWPKDS 81 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHHHHHHTTSSGT
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchHHHHHhCcccc
Confidence 4788887665 777889999999999999999765 5899999 7888999999999999999999998766
No 4
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=99.13 E-value=3e-10 Score=73.72 Aligned_cols=69 Identities=28% Similarity=0.424 Sum_probs=56.8
Q ss_pred EeEEEcC---eeEEEeccCCcccHHHHHHHHHhhcC---CCCceEEEEeecC--ceeecCCCCcchhhhhhcccCcc
Q psy8537 3 LKVWVEG---MQKIVSGVTESTTCQDIVFALAHATG---KTGRYTLIERFRN--NERLLTPQDHPIKLIKFSHKFTD 71 (102)
Q Consensus 3 LkVWV~G---~eR~V~GvT~~TTC~DVV~ALaq~~G---~~grY~LVEKwRg--~ER~L~p~e~pl~iL~~W~awg~ 71 (102)
|+|+.+. ..-..--|++.|||+|||.++++..| .|.+|.|+|...+ .||.|+|+|+|+.+++.|..++.
T Consensus 2 ikV~~~~~~~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl~~~~~~~~~~~ 78 (87)
T cd01768 2 LRVYPEDPSGGTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPLQIQLNAPRQRE 78 (87)
T ss_pred EEEeCCcCCCccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChHHHHHhcCCCCC
Confidence 5566544 34344468999999999999999754 6699999999999 99999999999999988886543
No 5
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=98.19 E-value=3.2e-06 Score=59.84 Aligned_cols=53 Identities=21% Similarity=0.324 Sum_probs=44.0
Q ss_pred cCCcccHHHHHHHHHhhcC----CCCceEEEEe----------ec-CceeecCCCCcchhhhhhcccC
Q psy8537 17 VTESTTCQDIVFALAHATG----KTGRYTLIER----------FR-NNERLLTPQDHPIKLIKFSHKF 69 (102)
Q Consensus 17 vT~~TTC~DVV~ALaq~~G----~~grY~LVEK----------wR-g~ER~L~p~e~pl~iL~~W~aw 69 (102)
+|..||-.+||..-++-.| +|.+|+|+|. || ..||+|+++|||+.+++.|.+-
T Consensus 22 vt~~~~a~~vV~eALeKygL~~e~p~~Y~LveV~~~~~~~~~~~r~~~eRil~d~E~Pl~i~~~w~~~ 89 (100)
T cd01781 22 LSINDNADRIVGEALEKYGLEKSDPDDYCLVEVSNDDDRKSSDLREIDERILDDDECPLFIMTAGPGE 89 (100)
T ss_pred ecCCccHHHHHHHHHHHhCCCccCccceEEEEEecccccccccccceeEEeCCCCcCHHHHHHhCCCc
Confidence 7889999999987666554 6889999996 44 3699999999999999998753
No 6
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=98.04 E-value=7.9e-06 Score=57.65 Aligned_cols=51 Identities=29% Similarity=0.470 Sum_probs=43.8
Q ss_pred cCCcccHHHHHHHHHhhcC----CCCceEEEEee--cC-ceeecCCCCcchhhhhhcc
Q psy8537 17 VTESTTCQDIVFALAHATG----KTGRYTLIERF--RN-NERLLTPQDHPIKLIKFSH 67 (102)
Q Consensus 17 vT~~TTC~DVV~ALaq~~G----~~grY~LVEKw--Rg-~ER~L~p~e~pl~iL~~W~ 67 (102)
||..||-+|||..-++-.| +|.+|+|+|.- || .||.|+++|||+.++..-.
T Consensus 23 V~~~tt~~dvv~eaL~kfGl~~~~~~~y~LvEV~ld~gv~ER~l~~~E~Pl~i~~~~r 80 (97)
T cd01783 23 VNKDTTVQDVILEVLPLFGLQAECPESFRLIEVLLDRGVVERTVLPQEKPLQIRLQLR 80 (97)
T ss_pred ecccchHHHHHHHHHHHhCcccCCccccEEEEEEecCCeeeeeCCCccChHHHHHHhh
Confidence 8899999999988777776 66799999998 54 4999999999999887544
No 7
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=97.31 E-value=0.00058 Score=48.46 Aligned_cols=49 Identities=24% Similarity=0.373 Sum_probs=42.8
Q ss_pred cCCcccHHHHHHHHHhh--cCCCCceEEEEeecCceeecCCCCcchhhhhh
Q psy8537 17 VTESTTCQDIVFALAHA--TGKTGRYTLIERFRNNERLLTPQDHPIKLIKF 65 (102)
Q Consensus 17 vT~~TTC~DVV~ALaq~--~G~~grY~LVEKwRg~ER~L~p~e~pl~iL~~ 65 (102)
.+..||-+|++..|+.- ..+.+.|-|+-|-+|.+|+|.|.|+|+.|-+.
T Consensus 19 ~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~~l~RvL~p~ErPl~Iqkr 69 (97)
T cd01775 19 CPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKHDLSRVLRPTEKPLLIQKR 69 (97)
T ss_pred cCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEECCeeeecCCcCCcHHHHHH
Confidence 45789999999999986 34558999999999999999999999998654
No 8
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA. Myosin_IXb_RA RasGTP binding domain from guanine nucleotide exchange factors. In some proteins the domain acts as a RasGTP effector (AF6, canoe and RalGDS, for example), but in other cases it may not bind to RasGTP at all.
Probab=97.30 E-value=0.00037 Score=50.13 Aligned_cols=59 Identities=20% Similarity=0.283 Sum_probs=49.3
Q ss_pred cCCcccHHHHHHHHHhhcC--CCCceEEEEee--cCceeecCCCCcchhhhhhcccCccCCCC
Q psy8537 17 VTESTTCQDIVFALAHATG--KTGRYTLIERF--RNNERLLTPQDHPIKLIKFSHKFTDNTSG 75 (102)
Q Consensus 17 vT~~TTC~DVV~ALaq~~G--~~grY~LVEKw--Rg~ER~L~p~e~pl~iL~~W~awg~E~~~ 75 (102)
.++.||-+|||.-++.++| .+++|+|+|.= -|-|++|.|.|+|+.-..+|-...-|+..
T Consensus 31 a~k~sTAa~VI~~~i~~L~Ld~tk~YvLaEVkEsGgEEwvL~p~D~pvqR~lLWPr~aqe~hp 93 (105)
T cd01779 31 ATKDSTAADVIDDVIASLQLDGTKCYVLAEVKESGGEEWVLDPTDSPVQRVLLWPRRAQEEHP 93 (105)
T ss_pred eccCCcHHHHHHHHHHHhCcCccccEEEEEeeccCCeeeecCcccCceeeEEeccHHHHhcCC
Confidence 5789999999999999877 45789999964 68899999999999999999765544433
No 9
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=97.28 E-value=0.00041 Score=49.04 Aligned_cols=52 Identities=23% Similarity=0.381 Sum_probs=44.2
Q ss_pred cCCcccHHHHHHHHHhh---cCCCCceEEEEee-cC---ceeecCCCCcchhhhhhccc
Q psy8537 17 VTESTTCQDIVFALAHA---TGKTGRYTLIERF-RN---NERLLTPQDHPIKLIKFSHK 68 (102)
Q Consensus 17 vT~~TTC~DVV~ALaq~---~G~~grY~LVEKw-Rg---~ER~L~p~e~pl~iL~~W~a 68 (102)
||..||+++||.+|++- ...|..|.|-|.- ++ ++|.|...|+||-.--.|++
T Consensus 23 IsS~tTt~eVI~~LL~KF~v~~nP~kFALYe~~h~~ge~~~rkL~d~E~PL~~rL~~gp 81 (96)
T cd01778 23 ISSKTTVREVIEALLKKFLVVDNPRKFALFEREHRTGQVYLRKLSDDECPLYLRLLAGP 81 (96)
T ss_pred EecCCcHHHHHHHHHHhheeccCCcceEEEEEEecCCcEEEEECCCCCCCeEeeEeeCC
Confidence 78999999999999996 4678999999873 32 34999999999999999863
No 10
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=96.99 E-value=0.0021 Score=44.50 Aligned_cols=65 Identities=26% Similarity=0.405 Sum_probs=54.6
Q ss_pred EeEEEc-CeeEEEeccCCcccHHHHHHHHHhhcC--CCCceEEEEeecCc--eeecCCCCcchhhhhhccc
Q psy8537 3 LKVWVE-GMQKIVSGVTESTTCQDIVFALAHATG--KTGRYTLIERFRNN--ERLLTPQDHPIKLIKFSHK 68 (102)
Q Consensus 3 LkVWV~-G~eR~V~GvT~~TTC~DVV~ALaq~~G--~~grY~LVEKwRg~--ER~L~p~e~pl~iL~~W~a 68 (102)
++|+.. |.-|. -.|.+..||.||...|++... ..-..+|+|.--+. ||.+-.+|..+++|..|.-
T Consensus 5 vkv~~~Dg~sK~-l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdvl~~W~~ 74 (85)
T cd01787 5 VKVYSEDGASKS-LEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVEVLSTWHS 74 (85)
T ss_pred EEEEecCCCeeE-EEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHHHHHhccc
Confidence 677774 44444 479999999999999998754 55679999999887 9999999999999999864
No 11
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=96.74 E-value=0.0028 Score=44.30 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=43.6
Q ss_pred cCCcccHHHHHHHHHhh---cCCCCceEEEEee-cCceeecCCCCcchhhhhhcc
Q psy8537 17 VTESTTCQDIVFALAHA---TGKTGRYTLIERF-RNNERLLTPQDHPIKLIKFSH 67 (102)
Q Consensus 17 vT~~TTC~DVV~ALaq~---~G~~grY~LVEKw-Rg~ER~L~p~e~pl~iL~~W~ 67 (102)
||..||++|||.+|++- ...|..|.|-|.- .|-+|.|...|+||-.=-+||
T Consensus 19 VsS~~tt~eVI~~LL~KFkv~~~p~~FALy~vh~~Ge~rkL~d~E~PL~~Rll~G 73 (87)
T cd01784 19 INSTMTTPQVLKLLLNKFKIENSAEEFALYIVHTSGEKRKLKATDYPLIARVLQG 73 (87)
T ss_pred EecCCCHHHHHHHHHHhccccCCHHHeEEEEEeeCCCEEECCCcCCCeehhhhcC
Confidence 67999999999999985 4678999999987 556699999999997766666
No 12
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=96.33 E-value=0.0096 Score=43.37 Aligned_cols=60 Identities=25% Similarity=0.356 Sum_probs=47.3
Q ss_pred CeeEEEec---cCCcccHHHHHHHHHhhc------CCCCceEEEEee-cCceeecCCCCcchhhhhhccc
Q psy8537 9 GMQKIVSG---VTESTTCQDIVFALAHAT------GKTGRYTLIERF-RNNERLLTPQDHPIKLIKFSHK 68 (102)
Q Consensus 9 G~eR~V~G---vT~~TTC~DVV~ALaq~~------G~~grY~LVEKw-Rg~ER~L~p~e~pl~iL~~W~a 68 (102)
+-+++.+. |+..+|+.|||.+|++-. -.+.+|.|-|.- .|-+|.|...|+||-.=-.|++
T Consensus 31 ~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~nGe~RKL~d~E~PL~~RL~w~~ 100 (112)
T cd01782 31 GGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHENGEERRLLDDEKPLVVQLNWHK 100 (112)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEecCCceEEcCCcCCCeEEeeccCC
Confidence 33444444 899999999999999852 345699998887 4668999999999988777874
No 13
>cd01786 STE50_RA Ubiquitin-like domain of STE50_RA. STE50_RA The fungal adaptor protein STE50 is an essential component of three MAPK-mediated signalling pathways, which control the mating response, invasive/filamentous growth and osmotolerance (HOG pathway), respectively. STE50 functions in cell signalling between the activated G protein and STE11. The domain architecture of STE50 includes an amino-terminal SAM (sterile alpha motif) domain in addition to the carboxy-terminal ubiquitin-like RA (RAS-associated) domain. While the SAM domain interacts with STE11, the RA domain interacts with CDC42 and RAS. Modulation of signal transduction by STE50 specifically affects the pheromone-response pathway in yeast.
Probab=92.63 E-value=0.27 Score=35.22 Aligned_cols=56 Identities=16% Similarity=0.344 Sum_probs=47.3
Q ss_pred cCCcccHHHHHHHHHhhcCCC----CceEEEEeecCceeecCCCCcchhhhhhcccCccC
Q psy8537 17 VTESTTCQDIVFALAHATGKT----GRYTLIERFRNNERLLTPQDHPIKLIKFSHKFTDN 72 (102)
Q Consensus 17 vT~~TTC~DVV~ALaq~~G~~----grY~LVEKwRg~ER~L~p~e~pl~iL~~W~awg~E 72 (102)
+|..-.|..|..+-++-..-. ..|+|+=-+-+.||.|+=+|+|+-+++....-|..
T Consensus 31 vs~dDpC~kVL~~Alkry~I~~~dW~~Y~L~I~YgdqER~L~ldEKPl~lFk~L~~~g~~ 90 (98)
T cd01786 31 ASKEDSCEKILKNAMKRHNLNDQDWRQYVLVICYGDQERILDLDEKPVIIFKNLKQQGLH 90 (98)
T ss_pred eeccCcHHHHHHHHHHHcCCChhhhhheEEEEEeCCeeeeccccccHHHHHHHHHHcCCC
Confidence 678899999999977764433 56999999999999999999999999988766653
No 14
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=92.09 E-value=0.9 Score=32.09 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=43.2
Q ss_pred eEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcCC--CCceEEEEeecCce--eecCCCCcchhhh
Q psy8537 2 ELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGK--TGRYTLIERFRNNE--RLLTPQDHPIKLI 63 (102)
Q Consensus 2 ELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~--~grY~LVEKwRg~E--R~L~p~e~pl~iL 63 (102)
.++|..-+....-..++..||++||+..+|+..|- ..-|.|.+.-.+.+ +-|++.....+..
T Consensus 5 ~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~ 70 (207)
T smart00295 5 VLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQD 70 (207)
T ss_pred EEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhc
Confidence 46777744444455699999999999999998774 46688888775532 4566664444443
No 15
>KOG3751|consensus
Probab=91.83 E-value=0.19 Score=45.17 Aligned_cols=67 Identities=19% Similarity=0.286 Sum_probs=55.2
Q ss_pred eEeEEEcCeeEEEeccCCcccHHHHHHHHHhh--cCCCCceEEEEeec--CceeecCCCCcchhhhhhccc
Q psy8537 2 ELKVWVEGMQKIVSGVTESTTCQDIVFALAHA--TGKTGRYTLIERFR--NNERLLTPQDHPIKLIKFSHK 68 (102)
Q Consensus 2 ELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~--~G~~grY~LVEKwR--g~ER~L~p~e~pl~iL~~W~a 68 (102)
-+||+.+...-..--|.++-||.||..-|++- .-.--++||||-+- ++||.+-.+|.-+++|+.|..
T Consensus 190 vVKvfseDgasksL~Vder~tardV~~lL~eKnH~~~d~~W~LvEh~P~L~iER~fEDHElVVEvls~W~~ 260 (622)
T KOG3751|consen 190 VVKVFSEDGASKSLLVDERMTARDVCQLLAEKNHCADDEDWCLVEHYPHLQIERVFEDHELVVEVLSMWTQ 260 (622)
T ss_pred eEEEEccCCceeeEeecccccHHHHHHHHHHhhhhhcccceeeeeecchhhhhhhhhhHHHHHHHHhhccc
Confidence 47888854444445799999999999999985 34557899999995 689999999999999998874
No 16
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=88.79 E-value=0.95 Score=32.10 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=45.7
Q ss_pred eeEEEeccCCcccHHHHHHHHHh-h---cCCCCceEEEEe----ec------CceeecCCCCcchhhhhhcccCc
Q psy8537 10 MQKIVSGVTESTTCQDIVFALAH-A---TGKTGRYTLIER----FR------NNERLLTPQDHPIKLIKFSHKFT 70 (102)
Q Consensus 10 ~eR~V~GvT~~TTC~DVV~ALaq-~---~G~~grY~LVEK----wR------g~ER~L~p~e~pl~iL~~W~awg 70 (102)
+...|--++...|-+|||..-+. + .-++.+|+|||- |. -.-|.|+-+||+++.-..|+.-|
T Consensus 12 qP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~~~fVLvEEv~~~~~~~~~~~~~QRVL~~~E~v~~aQs~Wkg~G 86 (93)
T cd01780 12 QPYAILRAPRVSTAQDVIQQTLCKARRSNPNPSDFVLVEEVCKDTKNNKTPKSSQRILLDQECVYQAQSKWKGAG 86 (93)
T ss_pred CCeeEEEccccccHHHHHHHHHHHhccCCCCccceEEEEEeeccccccCCCChhHhhhhcccchHHHHhhhcCCc
Confidence 44556667788899999875444 3 346789999995 33 24699999999999999998654
No 17
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=85.78 E-value=2.9 Score=29.18 Aligned_cols=62 Identities=24% Similarity=0.387 Sum_probs=48.6
Q ss_pred CeEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCC----CceEEEEee-cCceeecCCCCcchhh
Q psy8537 1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKT----GRYTLIERF-RNNERLLTPQDHPIKL 62 (102)
Q Consensus 1 MELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~----grY~LVEKw-Rg~ER~L~p~e~pl~i 62 (102)
.+|.|.+-.-.++.--+-.+-+-.+|-+++++.+|-| +-|+|.|-- -.+||-|.|.|.|-+.
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~YFaLFev~~~~f~RKL~dfE~Ph~l 68 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQNYFALFEVINHSFVRKLAPNEFPHKL 68 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhheeeeEEecceEEEeccCccCCceE
Confidence 3788888666666666777778899999999999877 447777764 5789999999999653
No 18
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=82.15 E-value=9.1 Score=23.98 Aligned_cols=47 Identities=19% Similarity=0.387 Sum_probs=36.6
Q ss_pred eEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCC-CceEEEEeecCcee
Q psy8537 2 ELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKT-GRYTLIERFRNNER 51 (102)
Q Consensus 2 ELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~-grY~LVEKwRg~ER 51 (102)
.+||...|+.|.+. +....|..|+...+.+..+.+ +.|.| +|++-|-
T Consensus 3 ~vK~~~~~~~~~~~-~~~~~s~~dL~~~i~~~~~~~~~~~~l--~Y~Dedg 50 (81)
T smart00666 3 DVKLRYGGETRRLS-VPRDISFEDLRSKVAKRFGLDNQSFTL--KYQDEDG 50 (81)
T ss_pred cEEEEECCEEEEEE-ECCCCCHHHHHHHHHHHhCCCCCCeEE--EEECCCC
Confidence 46787766666665 778999999999999998876 45666 8887654
No 19
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=81.52 E-value=3.4 Score=29.08 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=42.2
Q ss_pred cCCcccHHHHHHHHHhh--cCCCCceEEEEeecCceeecCCCCcchhhhhhc
Q psy8537 17 VTESTTCQDIVFALAHA--TGKTGRYTLIERFRNNERLLTPQDHPIKLIKFS 66 (102)
Q Consensus 17 vT~~TTC~DVV~ALaq~--~G~~grY~LVEKwRg~ER~L~p~e~pl~iL~~W 66 (102)
|.+.||-+||-...|+- .-+|..|-|.--=-|-+++|+|++.|-+|=.-.
T Consensus 20 V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd~~Pq~ika~L 71 (87)
T cd01776 20 VRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPDTYPQRIKAEL 71 (87)
T ss_pred cCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCcccccceechhh
Confidence 67888999998888885 469999999998899999999999998775433
No 20
>PF03992 ABM: Antibiotic biosynthesis monooxygenase; InterPro: IPR007138 This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species, which can carry out oxygenation without the assistance of any of the prosthetic groups, metal ions or cofactors normally associated with activation of molecular oxygen. The structure of ActVA-Orf6 monooxygenase from Streptomyces coelicolor (Q53908 from SWISSPROT), which is involved in actinorhodin biosynthesis, reveals a dimeric alpha+beta barrel topology []. There is also a conserved histidine that is likely to be an active site residue. In S. coelicolor SCO1909 (Q9X9W3 from SWISSPROT) this domain occurs as a repeat. This domain is also found in protein LsrG, involved in the degradation of quorum-sensing molecule autoinducer-2 [], and in several uncharacterised proteins.; PDB: 1X7V_A 3F44_A 4DN9_B 1N5T_B 1LQ9_A 1N5Q_B 1N5V_A 1N5S_A 2GFF_B 3BM7_A ....
Probab=77.46 E-value=0.98 Score=27.01 Aligned_cols=17 Identities=29% Similarity=0.704 Sum_probs=14.5
Q ss_pred cCCCCceEEEEeecCce
Q psy8537 34 TGKTGRYTLIERFRNNE 50 (102)
Q Consensus 34 ~G~~grY~LVEKwRg~E 50 (102)
..+|++|+++++|++.|
T Consensus 45 ~~~~~~~~~~~~W~s~~ 61 (78)
T PF03992_consen 45 LDDPNRYVIVERWESEE 61 (78)
T ss_dssp SSSTTEEEEEEEESSHH
T ss_pred cCCCCEEEEEEEECCHH
Confidence 46889999999999854
No 21
>COG1359 Uncharacterized conserved protein [Function unknown]
Probab=74.41 E-value=1.7 Score=29.12 Aligned_cols=16 Identities=31% Similarity=0.713 Sum_probs=14.0
Q ss_pred cCCCCceEEEEeecCc
Q psy8537 34 TGKTGRYTLIERFRNN 49 (102)
Q Consensus 34 ~G~~grY~LVEKwRg~ 49 (102)
.+.+++|+++|.|++-
T Consensus 46 ~~~~~~~~~~E~w~d~ 61 (100)
T COG1359 46 PDNPGRFVLIEVWEDE 61 (100)
T ss_pred CCCCCEEEEEEEECCH
Confidence 4678999999999994
No 22
>PRK10486 autoinducer-2 (AI-2) modifying protein LsrG; Provisional
Probab=74.30 E-value=1.9 Score=28.73 Aligned_cols=16 Identities=13% Similarity=0.428 Sum_probs=13.5
Q ss_pred cCCCCceEEEEeecCc
Q psy8537 34 TGKTGRYTLIERFRNN 49 (102)
Q Consensus 34 ~G~~grY~LVEKwRg~ 49 (102)
..+|+.|+++|+|++-
T Consensus 44 ~~~p~~~~~~E~w~d~ 59 (96)
T PRK10486 44 PEVPTRFYIYEAYKDE 59 (96)
T ss_pred CCCCCEEEEEEEeCCH
Confidence 3578999999999874
No 23
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=66.69 E-value=16 Score=18.89 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=27.5
Q ss_pred eEEEeccCCcccHHHHHHHHHhhcC-CCCceEEEEeec
Q psy8537 11 QKIVSGVTESTTCQDIVFALAHATG-KTGRYTLIERFR 47 (102)
Q Consensus 11 eR~V~GvT~~TTC~DVV~ALaq~~G-~~grY~LVEKwR 47 (102)
....--++..+|.+||+..+++..| .+.+|.|...-+
T Consensus 8 ~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~ 45 (69)
T cd00196 8 KTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGK 45 (69)
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCe
Confidence 3334446689999999999998875 557788876644
No 24
>KOG4239|consensus
Probab=59.56 E-value=13 Score=31.73 Aligned_cols=50 Identities=18% Similarity=0.391 Sum_probs=40.3
Q ss_pred ccCCcccHHHHHHHHHhh---cCCCCceEEEEee-cCce---eecCCCCcchhhhhhc
Q psy8537 16 GVTESTTCQDIVFALAHA---TGKTGRYTLIERF-RNNE---RLLTPQDHPIKLIKFS 66 (102)
Q Consensus 16 GvT~~TTC~DVV~ALaq~---~G~~grY~LVEKw-Rg~E---R~L~p~e~pl~iL~~W 66 (102)
-|+..||-.+||..|++- ...|..|+|.+.- +|=+ |-|...|+||. +++|
T Consensus 219 rInStttt~eVI~~LLkKF~Ved~P~kFALy~~~~~geqv~~~kLkd~d~PL~-~RLL 275 (348)
T KOG4239|consen 219 RINSTTTTREVIKLLLKKFRVEDNPQKFALYERHESGEQVKLTKLKDDDYPLI-LRLL 275 (348)
T ss_pred EecccccHHHHHHHHHHHHeecCCHhheeeeEEeecCchhhheecccccccHH-HHHH
Confidence 477899999999999996 4688999999998 4445 68888899985 3444
No 25
>smart00693 DysFN Dysferlin domain, N-terminal region. Domain of unknown function present in yeast peroxisomal proteins, dysferlin, myoferlin and hypothetical proteins. Due to an insertion of a dysferlin domain within a second dysferlin domain we have chosen to predict these domains in two parts: the N-terminal region and the C-terminal region.
Probab=55.92 E-value=5.9 Score=25.10 Aligned_cols=27 Identities=41% Similarity=0.918 Sum_probs=18.5
Q ss_pred ccCccCCCCCccceEEEEe-CCCCcccc
Q psy8537 67 HKFTDNTSGGEKSVKTIFI-SPGWEWKN 93 (102)
Q Consensus 67 ~awg~E~~~~~~~~~~~~~-~~~~~~~~ 93 (102)
.+|.|+..+....-+..|+ ++||+|..
T Consensus 29 ~~~sd~~~~~~~~p~~~~~p~~~W~W~d 56 (62)
T smart00693 29 PKFSDASGGKECLPKENLLPPPGWEWED 56 (62)
T ss_pred CccccCCCCcccCchhccCCCCCCEEcC
Confidence 4577874444445566777 88999975
No 26
>KOG1892|consensus
Probab=54.91 E-value=22 Score=35.10 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=39.0
Q ss_pred cCCcccHHHHHHHHH-hhc----CCCCceEEEEee-cCceeecCCCCcchhhhhhcc
Q psy8537 17 VTESTTCQDIVFALA-HAT----GKTGRYTLIERF-RNNERLLTPQDHPIKLIKFSH 67 (102)
Q Consensus 17 vT~~TTC~DVV~ALa-q~~----G~~grY~LVEKw-Rg~ER~L~p~e~pl~iL~~W~ 67 (102)
+-.-|-|+|-+-+=| +.. ..|..|||+..= -+.|-+|+-+||||.+++-|.
T Consensus 254 Llsi~d~Ad~~v~eaLeKYGLEk~~p~~yci~~vnsD~~e~ilDddECPL~i~~~~p 310 (1629)
T KOG1892|consen 254 LLSITDPADFAVAEALEKYGLEKENPKDYCIARVNSDAKEIILDDDECPLQIFREWP 310 (1629)
T ss_pred eeecCChHHHHHHHHHHHhcccccCCCceEEEEecCCcceeeccCccCcHHHHHhCC
Confidence 456678999665422 333 478999998875 568999999999999999865
No 27
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=53.76 E-value=44 Score=20.51 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=23.4
Q ss_pred EeEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCCCceEEEEe
Q psy8537 3 LKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIER 45 (102)
Q Consensus 3 LkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~grY~LVEK 45 (102)
++|.|+|++.-+ +.+|.+|++..| +-..+.+.|+.
T Consensus 1 m~i~~Ng~~~~~----~~~tl~~Ll~~l----~~~~~~vavav 35 (65)
T PRK06488 1 MKLFVNGETLQT----EATTLALLLAEL----DYEGNWLATAV 35 (65)
T ss_pred CEEEECCeEEEc----CcCcHHHHHHHc----CCCCCeEEEEE
Confidence 368899998887 346888888776 33334555543
No 28
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=53.60 E-value=15 Score=21.74 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=19.6
Q ss_pred EEeccCCcccHHHHHHHHHhhcCCCCceEEE
Q psy8537 13 IVSGVTESTTCQDIVFALAHATGKTGRYTLI 43 (102)
Q Consensus 13 ~V~GvT~~TTC~DVV~ALaq~~G~~grY~LV 43 (102)
.|+|+...+|.+|+...+. ..|...++.+.
T Consensus 2 ~i~nlp~~~~~~~l~~~f~-~~g~v~~v~~~ 31 (70)
T PF14259_consen 2 YISNLPPSTTEEDLRNFFS-RFGPVEKVRLI 31 (70)
T ss_dssp EEESSTTT--HHHHHHHCT-TSSBEEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCcceEEEE
Confidence 4789999999999877754 44655555554
No 29
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=51.53 E-value=53 Score=19.97 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=30.7
Q ss_pred CeEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCCC
Q psy8537 1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTG 38 (102)
Q Consensus 1 MELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~g 38 (102)
|.|+|--.+-+....-|.+.|+.+.++.+.++..|.+.
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~ 38 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPP 38 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCc
Confidence 44556555555888899999999999999999988665
No 30
>KOG1759|consensus
Probab=51.13 E-value=22 Score=26.03 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=36.2
Q ss_pred ccCCcccHHHHHHHHHhhcCCCCceEEEEeecCceeecCCCCcchhh
Q psy8537 16 GVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPIKL 62 (102)
Q Consensus 16 GvT~~TTC~DVV~ALaq~~G~~grY~LVEKwRg~ER~L~p~e~pl~i 62 (102)
+|... -=+|+..+||+..|+|.+|+.|+-=-+..=.+...+-|...
T Consensus 14 ~V~~~-fe~elt~~lAkimgkP~~~i~V~l~~~~~i~fggt~eP~A~ 59 (115)
T KOG1759|consen 14 KVPDG-FEKELTKALAKIMGKPEDYIMVELAGGVRIAFGGTTEPAAY 59 (115)
T ss_pred cCCcc-HHHHHHHHHHHHhCCChhhEEEEecCCceEeccCCCCccEE
Confidence 34444 66899999999999999999999777777777777666554
No 31
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=49.43 E-value=44 Score=20.58 Aligned_cols=36 Identities=25% Similarity=0.530 Sum_probs=26.5
Q ss_pred CeEeEEEcCeeEE-EeccCCcccHHHHHHHHHhhcCCC
Q psy8537 1 MELKVWVEGMQKI-VSGVTESTTCQDIVFALAHATGKT 37 (102)
Q Consensus 1 MELkVWV~G~eR~-V~GvT~~TTC~DVV~ALaq~~G~~ 37 (102)
++++|.=||.-+. |.|+ .-..|.|+..+|-+++|..
T Consensus 1 I~~~I~~dG~V~~~v~G~-~G~~C~~~t~~lE~~LG~v 37 (48)
T PF11211_consen 1 IEFTIYPDGRVEEEVEGF-KGSSCLEATAALEEALGTV 37 (48)
T ss_pred CEEEECCCcEEEEEEEec-cChhHHHHHHHHHHHhCce
Confidence 3566667776554 5555 4568999999999999874
No 32
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=48.82 E-value=62 Score=19.90 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=44.4
Q ss_pred eEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCCCceEEEEeecCcee---ecCCCCcchhhhhh
Q psy8537 2 ELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNER---LLTPQDHPIKLIKF 65 (102)
Q Consensus 2 ELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~grY~LVEKwRg~ER---~L~p~e~pl~iL~~ 65 (102)
-+||...|..+.+.-....+|.+|+...+++..+.+. -.+.=+|++-|- .|..++....+++.
T Consensus 2 ~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~-~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~ 67 (81)
T cd05992 2 RVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDA-VSFKLKYPDEDGDLVTISSDEDLEEAIEE 67 (81)
T ss_pred cEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCC-CcEEEEeeCCCCCEEEeCCHHHHHHHHHH
Confidence 4788888888888877799999999999999988763 344556776553 44444444444443
No 33
>cd01785 PDZ_GEF_RA Ubiquitin-like domain of PDZ_GEF_RA. PDZ_GEF_RA PDZ-GEF is a guanine nucleotide exchange factor (GEF) characterised by the presence of a PSD-95/DlgA/ZO-1 (PDZ) domain, a Ras-association (RA) domain and a region related to a cyclic nucleotide binding domain (RCBD). RA-GEF exchanges nucleotides of both Rap1 and Rap2, but is also thought to mediate cAMP-induced Ras activation. The RA domain interacts with Rap1 and also contributes to the membrane localization of RA-GEF. This domain may function in a positive feedback loop.
Probab=47.33 E-value=69 Score=22.53 Aligned_cols=53 Identities=26% Similarity=0.322 Sum_probs=36.8
Q ss_pred EeEEE-cCeeEEEeccCCcccHHHHHHHHHhhcCCC---CceEEEEeecCc-----eeecCCC
Q psy8537 3 LKVWV-EGMQKIVSGVTESTTCQDIVFALAHATGKT---GRYTLIERFRNN-----ERLLTPQ 56 (102)
Q Consensus 3 LkVWV-~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~---grY~LVEKwRg~-----ER~L~p~ 56 (102)
|+||= |+.-|.+ =+++.||-.+||..-.++.|-+ ..|.|-|.==+- .|-||+.
T Consensus 5 lkvykaDQt~kyi-li~K~Tta~evv~lal~eFgi~~~s~~~sLceVtV~~~g~IKQrRLPdq 66 (85)
T cd01785 5 LKVYKADQTCKYL-LIYKETTAHEVVMLALQEFGITAPSSNFSLCEVSVTPGGVIKQRRLPDQ 66 (85)
T ss_pred EEEEecCcceeEE-EEeccccHHHHHHHHHHHhCCCCCccceEEEEEEecCCceeeeccCCHH
Confidence 56665 4444555 6889999999999988987744 578888765443 2556654
No 34
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=42.87 E-value=50 Score=18.80 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=19.3
Q ss_pred EEeccCCcccHHHHHHHHHhhcCCC
Q psy8537 13 IVSGVTESTTCQDIVFALAHATGKT 37 (102)
Q Consensus 13 ~V~GvT~~TTC~DVV~ALaq~~G~~ 37 (102)
.|+|+...+|-.|+-..+.+ .|..
T Consensus 2 ~v~nlp~~~t~~~l~~~f~~-~g~i 25 (70)
T PF00076_consen 2 YVGNLPPDVTEEELRDFFSQ-FGKI 25 (70)
T ss_dssp EEESETTTSSHHHHHHHHHT-TSTE
T ss_pred EEcCCCCcCCHHHHHHHHHH-hhhc
Confidence 47799999999999998766 5544
No 35
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=39.39 E-value=93 Score=19.23 Aligned_cols=48 Identities=13% Similarity=0.293 Sum_probs=36.7
Q ss_pred eEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCC-CceEEEEeecCcee
Q psy8537 2 ELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKT-GRYTLIERFRNNER 51 (102)
Q Consensus 2 ELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~-grY~LVEKwRg~ER 51 (102)
-+|+...|..|..--+....+..++...+++..|.+ +.+.| +|++-|-
T Consensus 3 ~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l--~Y~D~dg 51 (84)
T PF00564_consen 3 RVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQL--KYKDEDG 51 (84)
T ss_dssp EEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEE--EEEETTS
T ss_pred EEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEE--EeeCCCC
Confidence 478888999988666777789999999999998876 55555 4554443
No 36
>KOG1892|consensus
Probab=39.09 E-value=36 Score=33.68 Aligned_cols=53 Identities=30% Similarity=0.364 Sum_probs=44.8
Q ss_pred cCCcccHHHHHHHHHhhcC------CCCceEEEEeecCceeecCCCCcchhhhhhcccC
Q psy8537 17 VTESTTCQDIVFALAHATG------KTGRYTLIERFRNNERLLTPQDHPIKLIKFSHKF 69 (102)
Q Consensus 17 vT~~TTC~DVV~ALaq~~G------~~grY~LVEKwRg~ER~L~p~e~pl~iL~~W~aw 69 (102)
|+...|-+|||.+|++..- ..-.|.|-|.=-.=||-|.-+|+||-+--.|+.=
T Consensus 61 VsStATt~dVidtL~EKFrPDmrMLS~p~YsLyEVH~nGERrL~~dEKPLvVQLnWhkD 119 (1629)
T KOG1892|consen 61 VSSTATTQDVIDTLAEKFRPDMRMLSSPKYSLYEVHVNGERRLDIDEKPLVVQLNWHKD 119 (1629)
T ss_pred ecccccHHHHHHHHHHHhCcchhhhcCCCceeeeeecCcccccCcccCceEEEeccccc
Confidence 7888899999999998632 2246999999999999999999999888777753
No 37
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=37.66 E-value=51 Score=19.89 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=19.6
Q ss_pred eEEEcCeeEEEeccCCcccHHHHHHHHH
Q psy8537 4 KVWVEGMQKIVSGVTESTTCQDIVFALA 31 (102)
Q Consensus 4 kVWV~G~eR~V~GvT~~TTC~DVV~ALa 31 (102)
+|.|+|++.-+ .+.+|.+|++.+|.
T Consensus 2 ~i~vNg~~~~~---~~~~tl~~ll~~l~ 26 (65)
T PRK06944 2 DIQLNQQTLSL---PDGATVADALAAYG 26 (65)
T ss_pred EEEECCEEEEC---CCCCcHHHHHHhhC
Confidence 68899998865 35678999998874
No 38
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=37.28 E-value=99 Score=18.91 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=35.1
Q ss_pred CeEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcC---CCCceEEEEeecCceeecC
Q psy8537 1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATG---KTGRYTLIERFRNNERLLT 54 (102)
Q Consensus 1 MELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G---~~grY~LVEKwRg~ER~L~ 54 (102)
|.|.|-..+-+...-.+...+|-+++-..+++..| .+.+..|+-. -+.|.
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~----G~~L~ 53 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYS----GKILK 53 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEEC----CEEcc
Confidence 55566543334444579999999999999999888 5777777732 34565
No 39
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=36.95 E-value=76 Score=18.41 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=17.8
Q ss_pred eEeEEEcCeeEEEeccCCcccHHHHHHH
Q psy8537 2 ELKVWVEGMQKIVSGVTESTTCQDIVFA 29 (102)
Q Consensus 2 ELkVWV~G~eR~V~GvT~~TTC~DVV~A 29 (102)
+++|-+||+++.+. |...|-+|++..
T Consensus 1 ~Vtv~~dG~~~~v~--T~a~tV~~~L~~ 26 (43)
T PF03990_consen 1 PVTVTVDGKEKTVY--TTASTVGDALKE 26 (43)
T ss_pred CEEEEECCEEEEEE--eCCCCHHHHHHh
Confidence 36888999999765 555555555544
No 40
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=35.28 E-value=16 Score=23.21 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=23.4
Q ss_pred CeEeEEEcCeeEEEec-------cCCcccHHHHHHHHHhhc
Q psy8537 1 MELKVWVEGMQKIVSG-------VTESTTCQDIVFALAHAT 34 (102)
Q Consensus 1 MELkVWV~G~eR~V~G-------vT~~TTC~DVV~ALaq~~ 34 (102)
|.++|-.-|.-|-..| +.+.+|++|++..|....
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~ 42 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKF 42 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHC
Confidence 5566666555554444 556889999999997643
No 41
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=35.21 E-value=1.1e+02 Score=18.79 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=36.8
Q ss_pred EcCeeEEEeccCCcccHHHHHHHHHhhcC--CCCceEEEE--eecCceeecCCCCcchhhhh
Q psy8537 7 VEGMQKIVSGVTESTTCQDIVFALAHATG--KTGRYTLIE--RFRNNERLLTPQDHPIKLIK 64 (102)
Q Consensus 7 V~G~eR~V~GvT~~TTC~DVV~ALaq~~G--~~grY~LVE--KwRg~ER~L~p~e~pl~iL~ 64 (102)
.||.. .-+-+++.||++|++..+++.+| ++--|-|.. ..-+..+-|.++....+.+.
T Consensus 4 lD~~~-~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~ 64 (80)
T PF09379_consen 4 LDGTT-KTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLK 64 (80)
T ss_dssp SSEEE-EEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTB
T ss_pred cCCCc-EEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcC
Confidence 35553 34458999999999999999766 445566666 33455566666644444443
No 42
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=35.13 E-value=1e+02 Score=19.09 Aligned_cols=36 Identities=25% Similarity=0.181 Sum_probs=24.6
Q ss_pred EeEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCCCceEEEEe
Q psy8537 3 LKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIER 45 (102)
Q Consensus 3 LkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~grY~LVEK 45 (102)
++|+|+|+.+-+. +.+|-.|++..| |-+.+.+.||.
T Consensus 1 m~i~vNG~~~~~~---~~~tl~~ll~~l----~~~~~~vav~~ 36 (65)
T PRK05863 1 MIVVVNEEQVEVD---EQTTVAALLDSL----GFPEKGIAVAV 36 (65)
T ss_pred CEEEECCEEEEcC---CCCcHHHHHHHc----CCCCCcEEEEE
Confidence 3689999998764 467766666654 65666666664
No 43
>PF14468 DUF4427: Protein of unknown function (DUF4427)
Probab=35.08 E-value=21 Score=26.89 Aligned_cols=45 Identities=24% Similarity=0.252 Sum_probs=33.7
Q ss_pred HHHHHHHHhh----cCCCCceEEEEeecCceeecCCCCcchhhhhhccc
Q psy8537 24 QDIVFALAHA----TGKTGRYTLIERFRNNERLLTPQDHPIKLIKFSHK 68 (102)
Q Consensus 24 ~DVV~ALaq~----~G~~grY~LVEKwRg~ER~L~p~e~pl~iL~~W~a 68 (102)
.+||.||+++ ...-|||.|==---+.-|.|--.|.+-+.+..|=+
T Consensus 47 ~~~vRALl~~grV~v~~eGRYLl~l~~~~s~~plr~kE~~ak~vA~~L~ 95 (132)
T PF14468_consen 47 SEVVRALLQAGRVKVNKEGRYLLDLDLFDSDWPLRKKEAMAKHVAGWLR 95 (132)
T ss_pred CHHHHHHHHcCceeeccCceeeeecccccCCCchHHHHHHHHHHHHHHH
Confidence 4799999997 46779999876666677777777777777766643
No 44
>PRK14647 hypothetical protein; Provisional
Probab=32.78 E-value=43 Score=24.70 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=30.1
Q ss_pred eEeEEEcCeeEEEeccCCcccHHHHHHHHHhhc---C-CCCceEEEEeecCceeecCC
Q psy8537 2 ELKVWVEGMQKIVSGVTESTTCQDIVFALAHAT---G-KTGRYTLIERFRNNERLLTP 55 (102)
Q Consensus 2 ELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~---G-~~grY~LVEKwRg~ER~L~p 55 (102)
-|.|.+|+.. |+| --.|+.+=.++-..+ . -++.|+|==.=-|.||+|--
T Consensus 38 ~lrV~ID~~~----gvs-lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG~~RpL~~ 90 (159)
T PRK14647 38 VLRLFIDKEG----GVN-LDDCAEVSRELSEILDVEDFIPERYTLEVSSPGLDRPLKK 90 (159)
T ss_pred EEEEEEeCCC----CCC-HHHHHHHHHHHHHHHcccccCCCCeEEEEcCCCCCCcCCC
Confidence 3678887643 454 346777766664432 2 25889886666666666654
No 45
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=32.06 E-value=65 Score=21.90 Aligned_cols=47 Identities=13% Similarity=0.233 Sum_probs=34.3
Q ss_pred CcccHHHHHHHHHhhcCCCCceEEEEeecCceeecCCCCcchhhhhh
Q psy8537 19 ESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPIKLIKF 65 (102)
Q Consensus 19 ~~TTC~DVV~ALaq~~G~~grY~LVEKwRg~ER~L~p~e~pl~iL~~ 65 (102)
+...+.++-.++++.+|+|.+|++|.---+.-=.....+.|...+.+
T Consensus 15 ~~~f~~~ls~~va~~lgKpe~~i~V~v~~~~~m~fgGs~~P~a~v~l 61 (114)
T PF01187_consen 15 PDDFLKELSKLVAELLGKPESYIMVTVEDGQRMSFGGSDDPAAFVEL 61 (114)
T ss_dssp HTTHHHHHHHHHHHHHTSTGGGEEEEEEESTEEEETTB-SS-EEEEE
T ss_pred hHHHHHHHHHHHHHHhCcchhhEEEEeeCCceEEECCCCCCEEEEEE
Confidence 35678899999999999999999999776665555555556544433
No 46
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=31.96 E-value=1.2e+02 Score=21.36 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=20.2
Q ss_pred cCeeEEEeccCCcccHHHHHHHHHhhcCCCC
Q psy8537 8 EGMQKIVSGVTESTTCQDIVFALAHATGKTG 38 (102)
Q Consensus 8 ~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~g 38 (102)
||.-|.| .|+..+++++|....++-.|.++
T Consensus 9 dG~tk~V-NV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 9 DGSTKTV-NVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp TTEEEEE-E--S--HHHHHHHHHHHHHTSS-
T ss_pred CCcEEEE-EECCCCCHHHHHHHHHHHcCCcc
Confidence 4555544 79999999999999999988877
No 47
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=31.41 E-value=1.2e+02 Score=18.27 Aligned_cols=34 Identities=15% Similarity=0.353 Sum_probs=23.4
Q ss_pred eEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCCCceEEEE
Q psy8537 4 KVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIE 44 (102)
Q Consensus 4 kVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~grY~LVE 44 (102)
+|.|+|+.+-+ .+.+|-+|++.. .|-+.+.+.|+
T Consensus 2 ~i~vNG~~~~~---~~~~tl~~lL~~----l~~~~~~vav~ 35 (66)
T PRK05659 2 NIQLNGEPREL---PDGESVAALLAR----EGLAGRRVAVE 35 (66)
T ss_pred EEEECCeEEEc---CCCCCHHHHHHh----cCCCCCeEEEE
Confidence 68899998754 456676666555 47666777776
No 48
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=30.49 E-value=1.4e+02 Score=18.72 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=23.8
Q ss_pred EeEEEcCe--eEEEeccCCcccHHHHHHHHHhhcCCCCceEEEE
Q psy8537 3 LKVWVEGM--QKIVSGVTESTTCQDIVFALAHATGKTGRYTLIE 44 (102)
Q Consensus 3 LkVWV~G~--eR~V~GvT~~TTC~DVV~ALaq~~G~~grY~LVE 44 (102)
++|.++|. ++.+ -+.+.+|.+|++..| |.+.+.+.|+
T Consensus 5 m~v~vng~~~~~~~-~~~~~~tv~~ll~~l----~~~~~~v~v~ 43 (70)
T PRK08364 5 IRVKVIGRGIEKEI-EWRKGMKVADILRAV----GFNTESAIAK 43 (70)
T ss_pred EEEEEeccccceEE-EcCCCCcHHHHHHHc----CCCCccEEEE
Confidence 67888888 3332 356678999988877 3333445554
No 49
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=28.19 E-value=1.6e+02 Score=18.51 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=27.0
Q ss_pred EeEEEcCeeEEEeccCCc-ccHHHHHHHHHhhcCCCCceEEEEeecCceeecCCC
Q psy8537 3 LKVWVEGMQKIVSGVTES-TTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQ 56 (102)
Q Consensus 3 LkVWV~G~eR~V~GvT~~-TTC~DVV~ALaq~~G~~grY~LVEKwRg~ER~L~p~ 56 (102)
++|.|+|+.+-+. +. +|-+|++. ..|-+...+.||. .+..+|+.
T Consensus 1 m~I~vNG~~~~~~---~~~~tv~~lL~----~l~~~~~~vav~v---N~~iv~r~ 45 (67)
T PRK07696 1 MNLKINGNQIEVP---ESVKTVAELLT----HLELDNKIVVVER---NKDILQKD 45 (67)
T ss_pred CEEEECCEEEEcC---CCcccHHHHHH----HcCCCCCeEEEEE---CCEEeCHH
Confidence 3688999988553 33 56555554 4466666777765 44555554
No 50
>PRK14644 hypothetical protein; Provisional
Probab=28.02 E-value=79 Score=23.00 Aligned_cols=44 Identities=7% Similarity=-0.076 Sum_probs=28.3
Q ss_pred EeEEEcCeeEEEeccCCcccHHHHHHHHHhhc----CCCCceEEEEeecCceeecC
Q psy8537 3 LKVWVEGMQKIVSGVTESTTCQDIVFALAHAT----GKTGRYTLIERFRNNERLLT 54 (102)
Q Consensus 3 LkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~----G~~grY~LVEKwRg~ER~L~ 54 (102)
|.|++|.. + --.|+.|=.+|-..+ --++.|.|==.=-|.+|+|-
T Consensus 29 LrV~Idk~-----~---iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRpL~ 76 (136)
T PRK14644 29 LEVILNSR-----D---LKDIEELTKEISDFIDNLSVEFDFDSLDISSPGFDMDYE 76 (136)
T ss_pred EEEEECCC-----C---HHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCCCC
Confidence 67777742 3 345666665554432 23588998777788888775
No 51
>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins.; PDB: 3DCX_E 3HSA_C 3B77_D.
Probab=27.79 E-value=94 Score=22.41 Aligned_cols=31 Identities=35% Similarity=0.473 Sum_probs=25.7
Q ss_pred eEeEEEcCeeE-EEeccCCcccHHHHHHHHHh
Q psy8537 2 ELKVWVEGMQK-IVSGVTESTTCQDIVFALAH 32 (102)
Q Consensus 2 ELkVWV~G~eR-~V~GvT~~TTC~DVV~ALaq 32 (102)
||++|+.|... ..-...+.+--.++-.+|++
T Consensus 90 Elki~i~~~~~~i~~~f~k~~di~~i~k~L~~ 121 (124)
T PF08000_consen 90 ELKIWISGQGFPIEFEFKKKTDIYEIYKALAE 121 (124)
T ss_dssp EEEEEETTESSEEEEEEGTTSHHHHHHHHHHH
T ss_pred cEEEEECCCcEEEEEecCCCCCHHHHHHHHHH
Confidence 89999999875 44478888888999888876
No 52
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=27.40 E-value=1.6e+02 Score=18.21 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=32.6
Q ss_pred CeEeEEE-cCeeEEEeccCCcccHHHHHHHHHhhcC-CCCceEEEEeecC
Q psy8537 1 MELKVWV-EGMQKIVSGVTESTTCQDIVFALAHATG-KTGRYTLIERFRN 48 (102)
Q Consensus 1 MELkVWV-~G~eR~V~GvT~~TTC~DVV~ALaq~~G-~~grY~LVEKwRg 48 (102)
|.|.|=. +|....+ .|...+|-.|+=..+++..| .+.+..|+ +.|
T Consensus 1 m~i~vk~~~G~~~~l-~v~~~~tV~~lK~~i~~~~gi~~~~q~L~--~~G 47 (74)
T cd01807 1 MFLTVKLLQGRECSL-QVSEKESVSTLKKLVSEHLNVPEEQQRLL--FKG 47 (74)
T ss_pred CEEEEEeCCCCEEEE-EECCCCcHHHHHHHHHHHHCCCHHHeEEE--ECC
Confidence 5555554 5655444 79999999999999998888 44667776 444
No 53
>PRK14638 hypothetical protein; Provisional
Probab=26.40 E-value=68 Score=23.57 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=32.1
Q ss_pred eEeEEEcCeeEEEec-cCCcccHHHHHHHHHhhc---C-CCCceEEEEeecCceeecCCCCcchhhhhhcccC
Q psy8537 2 ELKVWVEGMQKIVSG-VTESTTCQDIVFALAHAT---G-KTGRYTLIERFRNNERLLTPQDHPIKLIKFSHKF 69 (102)
Q Consensus 2 ELkVWV~G~eR~V~G-vT~~TTC~DVV~ALaq~~---G-~~grY~LVEKwRg~ER~L~p~e~pl~iL~~W~aw 69 (102)
-|.|.||... | +| --.|+.|=.+|...+ . -++.|.|==.=-|. +|||+..+.+..+
T Consensus 38 ~lrV~ID~~~----G~v~-lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl-------dRpL~~~~~f~r~ 98 (150)
T PRK14638 38 VLRIIIDNPV----GYVS-VRDCELFSREIERFLDREDLIEHSYTLEVSSPGL-------DRPLRGPKDYVRF 98 (150)
T ss_pred EEEEEEECCC----CCcC-HHHHHHHHHHHHHHhccccccCCceEEEEeCCCC-------CCCCCCHHHHHHh
Confidence 4778887542 4 44 356777777665432 2 25888875444444 4555555555444
No 54
>KOG0130|consensus
Probab=26.31 E-value=1.2e+02 Score=23.65 Aligned_cols=39 Identities=41% Similarity=0.483 Sum_probs=31.9
Q ss_pred EcCeeEEEeccCCcccHHHHHHHHHhh-------------cCCCCceEEEEe
Q psy8537 7 VEGMQKIVSGVTESTTCQDIVFALAHA-------------TGKTGRYTLIER 45 (102)
Q Consensus 7 V~G~eR~V~GvT~~TTC~DVV~ALaq~-------------~G~~grY~LVEK 45 (102)
|+|-.-.|+||.+.+|=.||-.+.++- +|-..-|+|||-
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEY 121 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEY 121 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeeh
Confidence 567777899999999999999988761 566667999983
No 55
>PF11863 DUF3383: Protein of unknown function (DUF3383); InterPro: IPR021808 This entry is represented by Bacteriophage rv5, Orf53. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins are functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 356 to 501 amino acids in length.
Probab=26.07 E-value=1.9e+02 Score=24.76 Aligned_cols=47 Identities=23% Similarity=0.431 Sum_probs=38.3
Q ss_pred EeEEEcCeeEEEec--cCCcccHHHHHHHHHhhcC---------CCCceEEEEeecCc
Q psy8537 3 LKVWVEGMQKIVSG--VTESTTCQDIVFALAHATG---------KTGRYTLIERFRNN 49 (102)
Q Consensus 3 LkVWV~G~eR~V~G--vT~~TTC~DVV~ALaq~~G---------~~grY~LVEKwRg~ 49 (102)
|+|-|+|..+.++| ++..|+=.||...|..+++ ..++|++.-.=-|.
T Consensus 110 lti~i~g~~~~~~~i~~s~ats~~~vA~~i~t~l~a~~~v~~~~~~~~f~v~s~~~G~ 167 (481)
T PF11863_consen 110 LTITIDGTEKTSSGIDLSAATSFSDVASAIQTALGASATVTWDATGSRFVVTSATTGA 167 (481)
T ss_pred EEEEECCEEEEeecccccccCCHHHHHHHHHHhhccceeeEEeccCceEEEEeccCCc
Confidence 68999999999999 7889999999999988776 34677777655444
No 56
>KOG3784|consensus
Probab=26.01 E-value=2e+02 Score=25.22 Aligned_cols=63 Identities=22% Similarity=0.236 Sum_probs=47.4
Q ss_pred eEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCC----CceEEEEeecC------ceeecCCCCcchhhhh
Q psy8537 2 ELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKT----GRYTLIERFRN------NERLLTPQDHPIKLIK 64 (102)
Q Consensus 2 ELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~----grY~LVEKwRg------~ER~L~p~e~pl~iL~ 64 (102)
+|.|.+-+.+++-..+.-+-|-.+|..+-+...|-+ |-|+|.+--++ ++|-|.+-|.|...+-
T Consensus 109 ~l~v~lpng~~i~i~~~~s~tt~~vl~~v~~kl~l~~e~i~~f~lFlvr~~~~~~ls~vRkl~~fE~p~vs~t 181 (407)
T KOG3784|consen 109 ELDVFLPNGEKITINCLVSDTASLVLKSVCRKLGLPDELIGYFGLFLVRDNDPGNLSFVRKLADFESPYVSLT 181 (407)
T ss_pred EEEEEccCCceEEEEEEecccHHHHHHHHHhhcCCchHhhhheeeeEEeccCCCcceeeeeeccccccccccc
Confidence 567777777888888777888888999888877754 55777776655 7788888888876553
No 57
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=25.00 E-value=2.2e+02 Score=19.07 Aligned_cols=38 Identities=8% Similarity=0.011 Sum_probs=25.0
Q ss_pred CeEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCCCceEEEEe
Q psy8537 1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIER 45 (102)
Q Consensus 1 MELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~grY~LVEK 45 (102)
+.++|.|+|+.+-+. +.+|-+|++.. .+-+.+.+.||.
T Consensus 17 ~~m~I~VNG~~~~~~---~~~tl~~LL~~----l~~~~~~vAVev 54 (84)
T PRK06083 17 VLITISINDQSIQVD---ISSSLAQIIAQ----LSLPELGCVFAI 54 (84)
T ss_pred ceEEEEECCeEEEcC---CCCcHHHHHHH----cCCCCceEEEEE
Confidence 357899999988764 56665655554 465556565553
No 58
>PRK14635 hypothetical protein; Provisional
Probab=24.87 E-value=71 Score=23.64 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=26.8
Q ss_pred EeEEEcCeeEEEeccCCcccHHHHHHHH---HhhcCCCCceEEEEeecCceeecC
Q psy8537 3 LKVWVEGMQKIVSGVTESTTCQDIVFAL---AHATGKTGRYTLIERFRNNERLLT 54 (102)
Q Consensus 3 LkVWV~G~eR~V~GvT~~TTC~DVV~AL---aq~~G~~grY~LVEKwRg~ER~L~ 54 (102)
|.|.||+-..-=.|+| --.|+.+=.++ ++.....+.|+|==.=-|.||+|-
T Consensus 36 lrV~ID~~~~~~~gv~-lddC~~vSr~is~~LD~~d~~~~Y~LEVSSPGldRpL~ 89 (162)
T PRK14635 36 IEVVLDNLEHPYGSVS-LLECEQVSRKLKEELERISPDLDFTLKVSSAGAERKLR 89 (162)
T ss_pred EEEEEecCCCCCCCcC-HHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCCCcCC
Confidence 6777765211002443 23566665555 443333478998555555555544
No 59
>PRK14632 hypothetical protein; Provisional
Probab=24.68 E-value=79 Score=23.77 Aligned_cols=49 Identities=22% Similarity=0.330 Sum_probs=30.5
Q ss_pred eEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcC----CCCceEEEEeecCceeecCC
Q psy8537 2 ELKVWVEGMQKIVSGVTESTTCQDIVFALAHATG----KTGRYTLIERFRNNERLLTP 55 (102)
Q Consensus 2 ELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G----~~grY~LVEKwRg~ER~L~p 55 (102)
-|.|+||+.. ||| --.|+.|=.++...+- -++.|+|==.=-|.||+|--
T Consensus 37 ~lrV~ID~~~----GV~-ldDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRpL~~ 89 (172)
T PRK14632 37 VVRLFVDGPE----GVT-IDQCAEVSRHVGLALEVEDVISSAYVLEVSSPGLERPFFR 89 (172)
T ss_pred EEEEEEECCC----CCC-HHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCCcCCC
Confidence 4788887543 454 3467777777654332 25789886666666666543
No 60
>KOG1117|consensus
Probab=24.54 E-value=1.6e+02 Score=28.88 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=45.9
Q ss_pred eEeEEEcCee---EEEeccCCcccHHHHHHH-HHh-h-cCCCCc-eEEEEee--cCceeecCCCCcchhhhhhcccCc
Q psy8537 2 ELKVWVEGMQ---KIVSGVTESTTCQDIVFA-LAH-A-TGKTGR-YTLIERF--RNNERLLTPQDHPIKLIKFSHKFT 70 (102)
Q Consensus 2 ELkVWV~G~e---R~V~GvT~~TTC~DVV~A-Laq-~-~G~~gr-Y~LVEKw--Rg~ER~L~p~e~pl~iL~~W~awg 70 (102)
.+.|+|...+ -+.-.|+..-|-+++-.- |+. . .+.+|+ |+.+|-- -..||.|++.|+.++..-.|..|+
T Consensus 928 i~eVyveeKepd~~~~ikVs~sm~aEEltneila~r~~~~~~~d~watFEv~e~~eleRpLh~aekvleqvLqw~~l~ 1005 (1186)
T KOG1117|consen 928 IIEVYVEEKEPDCSIIIKVSPSMTAEELTNEILAIRNIIPTKGDIWATFEVIENEELERPLHYAEKVLEQVLQWSSLA 1005 (1186)
T ss_pred EEEEEEeecCCCcceeEecCccccHHHHHHHHHHhcCCCCCCCCceEEEEEccCcccccCCchHHHHHHHHHhhhccC
Confidence 3567776655 444456666665555432 222 2 334455 7888887 468999999999999777888887
No 61
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=23.83 E-value=1.1e+02 Score=20.66 Aligned_cols=47 Identities=15% Similarity=0.117 Sum_probs=36.8
Q ss_pred CcccHHHHHHHHHhhcCCCCceEEEEeecCceeecCCCCcchhhhhh
Q psy8537 19 ESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPIKLIKF 65 (102)
Q Consensus 19 ~~TTC~DVV~ALaq~~G~~grY~LVEKwRg~ER~L~p~e~pl~iL~~ 65 (102)
...-+.++-.+|++.+|.|-+|.+|.-=-+..-.+.+.+.|.-..++
T Consensus 17 ~~~~~~~~~~~l~~~lgkPe~~~~v~~~~~~~m~f~g~~~p~a~v~i 63 (116)
T PTZ00397 17 ADAALSDIENAIADVLGKPLSYIMSGYDYQKHMRFGGSHDGCCFVRV 63 (116)
T ss_pred HHHHHHHHHHHHHHHhCCChHHEEEEEeCCceEEECCCCCceEEEEE
Confidence 45667788888889999999999999888888777777666655443
No 62
>PRK14640 hypothetical protein; Provisional
Probab=23.80 E-value=1.6e+02 Score=21.54 Aligned_cols=56 Identities=21% Similarity=0.414 Sum_probs=34.7
Q ss_pred eEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcC----CCCceEEEEeecCceeecCCCCcchhhhhhcccC
Q psy8537 2 ELKVWVEGMQKIVSGVTESTTCQDIVFALAHATG----KTGRYTLIERFRNNERLLTPQDHPIKLIKFSHKF 69 (102)
Q Consensus 2 ELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G----~~grY~LVEKwRg~ER~L~p~e~pl~iL~~W~aw 69 (102)
-|+|.+|+.. ||| --.|+.|=.+|-..+- -++.|+|==.=-|.|| ||+..+.+..+
T Consensus 36 ~lrV~ID~~~----gv~-lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~R-------pL~~~~~f~r~ 95 (152)
T PRK14640 36 TLRVYIDGEN----GVS-VENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLDR-------PLFKVAQFEKY 95 (152)
T ss_pred EEEEEEECCC----CCC-HHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCC-------cCCCHHHHHHh
Confidence 3778888653 554 4579999888866432 2588987555455554 45555555444
No 63
>KOG3669|consensus
Probab=23.73 E-value=50 Score=30.61 Aligned_cols=52 Identities=21% Similarity=0.285 Sum_probs=32.5
Q ss_pred CCceEEE--EeecCce-eecCCCCcchhhhhhcccCccCCCCCc-cceEEEEeCCCCcccceee
Q psy8537 37 TGRYTLI--ERFRNNE-RLLTPQDHPIKLIKFSHKFTDNTSGGE-KSVKTIFISPGWEWKNYAH 96 (102)
Q Consensus 37 ~grY~LV--EKwRg~E-R~L~p~e~pl~iL~~W~awg~E~~~~~-~~~~~~~~~~~~~~~~~~~ 96 (102)
++.|++- |+|-+.| +-|-|.|++. |.++.-.++ -..++..+||+|+|-.--|
T Consensus 59 ~~~~~iYeNqRWlgIegaglLptDR~r--------~Sda~Gsv~r~~~~~~l~S~~w~W~~DWh 114 (705)
T KOG3669|consen 59 LGPSCIYENQRWLGIEGAGLLPTDRFR--------ESDAGGSVPRYGILSLLVSEKWIWCLDWH 114 (705)
T ss_pred cCccceecccccccccccccCCCcccc--------cccCCCCcccccccccccCccceEecccc
Confidence 3445554 4788888 8888877763 333333333 2245678999999975444
No 64
>PRK14639 hypothetical protein; Provisional
Probab=23.34 E-value=1.7e+02 Score=21.24 Aligned_cols=49 Identities=22% Similarity=0.296 Sum_probs=31.8
Q ss_pred eEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcC----CCCceEEEEeecCceeecCC
Q psy8537 2 ELKVWVEGMQKIVSGVTESTTCQDIVFALAHATG----KTGRYTLIERFRNNERLLTP 55 (102)
Q Consensus 2 ELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G----~~grY~LVEKwRg~ER~L~p 55 (102)
-|+|.+|.. .|+| -..|+.+=.++...+- -++.|+|==.=-|.||+|-.
T Consensus 27 ~lrV~Id~~----~gv~-iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL~~ 79 (140)
T PRK14639 27 IYRVYITKE----GGVN-LDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERKLSK 79 (140)
T ss_pred EEEEEEeCC----CCCC-HHHHHHHHHHHHHHhccccccCCCeEEEEeCCCCCCcCCC
Confidence 367788753 2555 5678888888765432 25899986666666665543
No 65
>PRK14633 hypothetical protein; Provisional
Probab=23.10 E-value=1.9e+02 Score=21.17 Aligned_cols=56 Identities=18% Similarity=0.314 Sum_probs=34.6
Q ss_pred eEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcC----CCCceEEEEeecCceeecCCCCcchhhhhhcccC
Q psy8537 2 ELKVWVEGMQKIVSGVTESTTCQDIVFALAHATG----KTGRYTLIERFRNNERLLTPQDHPIKLIKFSHKF 69 (102)
Q Consensus 2 ELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G----~~grY~LVEKwRg~ER~L~p~e~pl~iL~~W~aw 69 (102)
-|.|.+|+. .||| --.|+.|=.++-..+- -++.|+|==.=-|.|| ||+..+.+..+
T Consensus 33 ~lrV~ID~~----~Gv~-lddC~~vSr~i~~~LD~~d~i~~~Y~LEVSSPGldR-------pL~~~~~f~r~ 92 (150)
T PRK14633 33 TIRIFIDHE----NGVS-VDDCQIVSKEISAVFDVEDPVSGKYILEVSSPGMNR-------QIFNIIQAQAL 92 (150)
T ss_pred EEEEEEeCC----CCCC-HHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCCC-------CCCCHHHHHHh
Confidence 478888865 3665 4678888887755432 2588988555555555 45555555444
No 66
>smart00360 RRM RNA recognition motif.
Probab=22.26 E-value=1.4e+02 Score=15.97 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=13.9
Q ss_pred EeccCCcccHHHHHHHHHh
Q psy8537 14 VSGVTESTTCQDIVFALAH 32 (102)
Q Consensus 14 V~GvT~~TTC~DVV~ALaq 32 (102)
|+|+...++-+||-..+.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~ 19 (71)
T smart00360 1 VGNLPPDVTEEELRELFSK 19 (71)
T ss_pred CCCCCcccCHHHHHHHHHh
Confidence 4678888888888777643
No 67
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=20.65 E-value=2.2e+02 Score=17.36 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=17.7
Q ss_pred EEeccCCcccHHHHHHHHHhhcC
Q psy8537 13 IVSGVTESTTCQDIVFALAHATG 35 (102)
Q Consensus 13 ~V~GvT~~TTC~DVV~ALaq~~G 35 (102)
....+.+.+|.+|++..|....+
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~ 40 (80)
T cd00754 18 EELELPEGATVGELLDALEARYP 40 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCc
Confidence 33456678999999999987654
Done!