Query psy8537
Match_columns 102
No_of_seqs 92 out of 94
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 21:26:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8537.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8537hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cs4_A Protein C12ORF2; GTP bi 100.0 4.4E-37 1.5E-41 213.6 6.4 77 1-80 8-84 (95)
2 2uwq_A Apoptosis-stimulating o 100.0 1.5E-34 5.3E-39 198.1 4.2 68 1-70 7-76 (86)
3 1wxa_A Afadin, AF-6 protein; R 98.5 1.3E-07 4.5E-12 65.9 5.6 53 17-69 30-97 (116)
4 2c5l_C Phosphoinositide-specif 97.7 6.2E-05 2.1E-09 53.5 5.1 58 12-69 21-99 (117)
5 1wgr_A Growth factor receptor- 97.6 0.00018 6.3E-09 49.5 6.6 66 2-68 11-81 (100)
6 4gmv_A RAS-associated and plec 97.4 0.0004 1.4E-08 54.5 7.0 67 2-68 33-103 (281)
7 3tca_A Amyloid beta A4 precurs 97.2 0.0011 3.9E-08 48.3 7.2 69 2-70 36-108 (291)
8 3hk0_A Growth factor receptor- 97.1 0.0015 5E-08 50.5 7.0 66 2-67 10-79 (256)
9 2bye_A Phospholipase C, epsilo 96.9 0.0021 7E-08 45.5 5.9 58 12-69 23-96 (110)
10 3ddc_B RAS association domain- 96.9 0.0012 4.1E-08 49.3 4.8 52 17-68 93-151 (163)
11 3au4_A Myosin-X; protein-prote 96.5 0.011 3.7E-07 48.3 8.3 70 2-72 218-291 (555)
12 4dxa_B KREV interaction trappe 94.0 0.064 2.2E-06 40.9 4.5 65 1-69 6-76 (322)
13 3ec8_A Putative uncharacterize 92.4 0.15 5.2E-06 38.1 4.4 52 17-68 56-122 (166)
14 2l32_A Small archaeal modifier 92.4 0.17 5.7E-06 32.2 4.0 50 1-57 1-50 (74)
15 3pvl_A Myosin VIIA isoform 1; 90.0 0.79 2.7E-05 39.1 7.0 74 2-75 265-341 (655)
16 2al6_A Focal adhesion kinase 1 84.8 1.7 5.9E-05 33.9 5.6 66 3-68 10-83 (375)
17 2fb0_A Conserved hypothetical 82.5 0.35 1.2E-05 29.6 0.7 16 35-50 48-63 (94)
18 1x7v_A PA3566 protein, APC5058 79.6 0.51 1.8E-05 29.0 0.7 20 35-54 50-72 (99)
19 2kzr_A Ubiquitin thioesterase 79.2 7.5 0.00026 24.0 6.1 43 1-44 1-45 (86)
20 3gz7_A Putative antibiotic bio 78.7 0.52 1.8E-05 31.4 0.5 20 34-53 63-82 (115)
21 2gff_A LSRG protein; dimeric a 77.3 0.63 2.2E-05 29.4 0.6 16 35-50 45-60 (106)
22 3kkf_A Putative antibiotic bio 77.0 0.67 2.3E-05 29.5 0.7 17 34-50 49-65 (105)
23 1h4r_A Merlin; FERM, neurofibr 75.6 8.7 0.0003 28.6 6.5 57 3-61 25-84 (314)
24 3bm7_A Protein of unknown func 74.8 0.81 2.8E-05 29.8 0.6 16 35-50 65-80 (115)
25 2bbe_A Hypothetical protein SO 74.1 0.87 3E-05 28.9 0.6 20 35-54 57-79 (108)
26 1y0h_A Hypothetical protein RV 73.9 0.91 3.1E-05 28.0 0.6 20 35-54 48-70 (102)
27 1q8b_A Protein YJCS; structura 73.5 0.6 2.1E-05 29.8 -0.3 20 35-54 58-80 (105)
28 3e8o_A Uncharacterized protein 71.4 1.1 3.7E-05 29.4 0.6 17 34-50 62-78 (119)
29 2omo_A DUF176; structural geno 70.7 1.1 3.9E-05 29.7 0.6 20 35-54 67-89 (124)
30 1iuj_A Hypothetical protein TT 68.0 1.5 5E-05 27.1 0.6 18 35-52 45-62 (106)
31 1tuv_A Protein YGIN; menadione 67.0 1.6 5.6E-05 28.3 0.7 16 35-50 55-70 (114)
32 1ef1_A Moesin; membrane, FERM 66.3 28 0.00095 25.4 7.4 56 2-59 3-62 (294)
33 2kmm_A Guanosine-3',5'-BIS(dip 66.3 7.6 0.00026 22.8 3.6 31 1-34 1-32 (73)
34 4hl9_A Antibiotic biosynthesis 65.7 3.1 0.0001 27.9 1.9 16 35-50 67-82 (118)
35 3qij_A Protein 4.1; cytoskelet 63.9 29 0.00098 26.0 7.2 61 1-61 18-81 (296)
36 2pd1_A Hypothetical protein; u 63.2 3.2 0.00011 25.6 1.6 19 36-54 48-69 (104)
37 4dpo_A Conserved protein; stru 63.0 1.1 3.9E-05 29.6 -0.6 16 35-50 69-84 (119)
38 4dn9_A Antibiotic biosynthesis 63.0 1.1 3.9E-05 29.9 -0.7 17 34-50 63-79 (122)
39 2zdo_A Heme-degrading monooxyg 59.3 2.6 9E-05 26.7 0.6 36 34-71 46-83 (109)
40 2ril_A Antibiotic biosynthesis 59.0 2.4 8.4E-05 26.4 0.4 20 35-54 49-70 (99)
41 4eku_A Protein-tyrosine kinase 57.9 15 0.00051 29.3 4.9 54 16-69 43-104 (392)
42 2al3_A TUG long isoform; TUG U 56.9 20 0.00068 24.0 4.7 45 1-45 10-55 (90)
43 1sqe_A Hypothetical protein PG 55.5 2.9 9.8E-05 26.5 0.3 17 35-51 45-63 (109)
44 3hx9_A Protein RV3592; DI-heme 55.5 2.6 9E-05 28.6 0.1 17 35-51 46-62 (124)
45 3kg0_A Snoab; polyketide, anth 54.9 3.5 0.00012 27.9 0.7 17 34-50 65-81 (128)
46 3ivf_A Talin-1; FERM domain, c 52.0 25 0.00084 26.9 5.1 44 2-45 87-132 (371)
47 1f0z_A THis protein; ubiquitin 50.1 34 0.0012 20.1 4.6 34 4-44 2-35 (66)
48 3cf6_E RAP guanine nucleotide 46.6 29 0.00099 29.4 5.2 37 16-52 368-404 (694)
49 3mcs_A Putative monooxygenase; 45.5 6.6 0.00023 29.0 1.0 21 34-54 50-73 (219)
50 2kl0_A Putative thiamin biosyn 42.9 23 0.00078 21.9 3.1 34 4-45 2-35 (73)
51 3mcs_A Putative monooxygenase; 42.5 4.8 0.00016 29.8 -0.2 16 34-49 156-171 (219)
52 3f44_A Putative monooxygenase; 41.9 4.1 0.00014 29.7 -0.6 21 34-54 160-183 (220)
53 2i1j_A Moesin; FERM, coiled-co 37.6 80 0.0027 26.4 6.4 53 3-57 7-63 (575)
54 3a9j_A Ubiquitin; protein comp 37.0 57 0.0019 18.4 5.0 56 1-62 1-58 (76)
55 1tyg_B YJBS; alpha beta barrel 35.0 39 0.0013 21.8 3.4 25 3-30 21-46 (87)
56 2cu3_A Unknown function protei 34.9 69 0.0023 18.7 4.4 33 4-44 1-33 (64)
57 2bwf_A Ubiquitin-like protein 34.7 65 0.0022 18.4 4.4 57 1-63 3-62 (77)
58 1ryj_A Unknown; beta/alpha pro 34.4 64 0.0022 19.3 4.1 28 3-30 5-33 (70)
59 1lfd_A Ralgds; RAL, effector i 32.2 81 0.0028 21.1 4.6 44 17-60 23-71 (87)
60 1sif_A Ubiquitin; hydrophobic 31.8 88 0.003 19.0 5.0 57 1-63 10-68 (88)
61 2k5p_A THis protein, thiamine- 30.7 62 0.0021 20.2 3.7 37 4-45 2-39 (78)
62 1yx5_B Ubiquitin; proteasome, 29.2 1E+02 0.0035 18.9 5.1 57 1-63 1-59 (98)
63 3hsa_A Pleckstrin homology dom 28.7 59 0.002 22.8 3.6 32 2-33 91-123 (126)
64 1ndd_A NEDD8, protein (ubiquit 27.2 88 0.003 17.5 4.7 56 1-62 1-58 (76)
65 1v5t_A 8430435I17RIK protein; 27.1 1.1E+02 0.0038 18.7 5.2 60 1-63 8-69 (90)
66 1wy8_A NP95-like ring finger p 27.1 1E+02 0.0034 18.3 4.1 51 8-63 16-68 (89)
67 1rax_A Protein (RA-domain of R 26.8 93 0.0032 21.8 4.3 45 17-61 48-97 (115)
68 3mtn_B UBA80, ubcep1, ubiquiti 26.4 99 0.0034 17.8 4.0 43 8-55 12-55 (85)
69 2uyz_B Small ubiquitin-related 25.8 78 0.0027 18.4 3.4 39 3-42 4-46 (79)
70 1n62_A Carbon monoxide dehydro 25.7 1E+02 0.0034 22.0 4.5 28 1-29 4-31 (166)
71 2faz_A Ubiquitin-like containi 25.5 92 0.0032 17.9 3.6 43 8-54 11-55 (78)
72 3gne_A Val-1; alginate lyase, 24.6 57 0.0019 25.4 3.2 21 2-22 187-207 (252)
73 1vd2_A Protein kinase C, IOTA 24.1 1.5E+02 0.0053 19.3 5.0 49 1-50 7-55 (89)
74 1wgk_A Riken cDNA 2900073H19 p 23.8 31 0.0011 23.1 1.4 14 21-34 43-56 (114)
75 3n3k_B Ubiquitin; hydrolase, p 23.3 1.2E+02 0.004 17.6 4.4 42 1-43 4-47 (85)
76 1rlf_A RLF, RLF-RBD; signal tr 23.1 87 0.003 21.1 3.5 37 26-62 36-76 (90)
77 3md1_A Nuclear and cytoplasmic 22.8 1.1E+02 0.0037 17.3 3.5 20 13-32 5-24 (83)
78 2nnz_A Hypothetical protein; b 22.6 71 0.0024 22.6 3.2 29 1-30 30-61 (153)
79 3b08_A Polyubiquitin-C, ubiqui 21.3 1.7E+02 0.0057 18.6 5.0 56 1-62 1-58 (152)
80 2dzi_A Ubiquitin-like protein 20.8 1.3E+02 0.0044 17.2 4.5 42 1-43 8-51 (81)
81 1x5s_A Cold-inducible RNA-bind 20.4 1.4E+02 0.0049 17.6 4.5 20 13-32 16-35 (102)
82 3m63_B Ubiquitin domain-contai 20.1 63 0.0022 20.5 2.2 51 1-55 27-79 (101)
No 1
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=100.00 E-value=4.4e-37 Score=213.59 Aligned_cols=77 Identities=55% Similarity=0.906 Sum_probs=68.7
Q ss_pred CeEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCCCceEEEEeecCceeecCCCCcchhhhhhcccCccCCCCCccce
Q psy8537 1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPIKLIKFSHKFTDNTSGGEKSV 80 (102)
Q Consensus 1 MELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~grY~LVEKwRg~ER~L~p~e~pl~iL~~W~awg~E~~~~~~~~ 80 (102)
|||+|||||+||+|||||++|||+|||+|||+++|+||+|+|||||||+||+|||+++|+++ |.+||++|++-.-..
T Consensus 8 mel~Vwv~g~er~VsGvT~~TTC~DVV~aL~~~~G~~~~y~LvE~wRg~ER~L~~~~r~l~~---l~~wG~~~~eV~F~L 84 (95)
T 2cs4_A 8 MELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHLAPHENPIIS---LNKWGQYASDVQLIL 84 (95)
T ss_dssp BCCCEEETTEEECCSSBCSSSCHHHHHHHHHHHHSCCSEEEEEEEETTEEEECCSSSCHHHH---HHTTGGGSTTCEEEE
T ss_pred CEEEEEECCceeEEECCCCCCcHHHHHHHHHhccCCCccEEEEEecCCCeecCCCcccHHHH---HHHhCcCCCceEEEE
Confidence 89999999999999999999999999999999999999999999999999999999877666 455677777644433
No 2
>2uwq_A Apoptosis-stimulating of P53 protein 2; ASPP2, ubiquitin-like, SH3-domain, cell cycle, ANK repeat, SH3-binding; NMR {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=198.06 Aligned_cols=68 Identities=22% Similarity=0.350 Sum_probs=63.6
Q ss_pred CeEeEEEcCeeEEEe--ccCCcccHHHHHHHHHhhcCCCCceEEEEeecCceeecCCCCcchhhhhhcccCc
Q psy8537 1 MELKVWVEGMQKIVS--GVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPIKLIKFSHKFT 70 (102)
Q Consensus 1 MELkVWV~G~eR~V~--GvT~~TTC~DVV~ALaq~~G~~grY~LVEKwRg~ER~L~p~e~pl~iL~~W~awg 70 (102)
|||+|||||++|+|| |||++|||+||| ||||++|+ |+|+|+|||||+||+|||+++|+++|+.|++-.
T Consensus 7 mel~Vwv~g~er~v~~vgvT~~TTC~DVV-aL~~~~G~-~~~~LvE~WR~~ER~L~~~er~l~~l~~WG~~~ 76 (86)
T 2uwq_A 7 MFLTVYLSNNEQHFTEVPVTPETICRDVV-DLCKEPGE-SDCHLAEVWCGSERPVADNERMFDVLQRFGSQR 76 (86)
T ss_dssp EEEEEECSSCSSCEEEEEECTTCBSHHHH-HHSCSSCS-SSCEEEEEETTEEEEECTTCBHHHHHHHHCSCG
T ss_pred eEEEEEecCCccEEEccCCCCCCcHHHHH-HHHHccCC-CcEEEEeeeCCCcccCCCcccHHHHHHHHcccC
Confidence 899999999999999 999999999999 99999999 999999999999999999988888877665543
No 3
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=98.53 E-value=1.3e-07 Score=65.85 Aligned_cols=53 Identities=15% Similarity=0.222 Sum_probs=46.8
Q ss_pred cCCcccHHHHHHHHHhhcC----CCCceEEEEee----------c-CceeecCCCCcchhhhhhcccC
Q psy8537 17 VTESTTCQDIVFALAHATG----KTGRYTLIERF----------R-NNERLLTPQDHPIKLIKFSHKF 69 (102)
Q Consensus 17 vT~~TTC~DVV~ALaq~~G----~~grY~LVEKw----------R-g~ER~L~p~e~pl~iL~~W~aw 69 (102)
+|.+||+++||...++-.| .+.+|+|+|.- | +.||.|+++|||+.+++.|..-
T Consensus 30 vt~~tta~~vV~eaLekygL~~~~~~~Y~LveV~~~~~~~~~~~~g~~ErvL~~~E~Pl~i~~~w~~~ 97 (116)
T 1wxa_A 30 LSTTDTADFAVAESLEKYGLEKENPKDYCIARVMLPPGAQHSDERGAKEIILDDDECPLQIFREWPSD 97 (116)
T ss_dssp CCSSCCHHHHHHHHHHHHTCSSSCTTTEEEEEEECCSSCCSSSSTTCEEECCCSSCCHHHHHHTCCGG
T ss_pred eCCCCCHHHHHHHHHHHhCCCCCCchheEEEEEECccccccccCCCceEEECCCCCCHHHHHHhcccc
Confidence 7899999999999888776 46789999985 2 7899999999999999999765
No 4
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=97.66 E-value=6.2e-05 Score=53.47 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=46.7
Q ss_pred EEEeccCCcccHHHHHHHHHhhcCC---------CCceEEEEeec-C-----------ceeecCCCCcchhhhhhcccC
Q psy8537 12 KIVSGVTESTTCQDIVFALAHATGK---------TGRYTLIERFR-N-----------NERLLTPQDHPIKLIKFSHKF 69 (102)
Q Consensus 12 R~V~GvT~~TTC~DVV~ALaq~~G~---------~grY~LVEKwR-g-----------~ER~L~p~e~pl~iL~~W~aw 69 (102)
-.+--+|..||-+|||.--++-.|. +.+|+|+|--- + .+|.|.++|+|++++..|+.-
T Consensus 21 y~iv~vt~~STAqdvI~eaL~kag~~~~~~~~~~~~dYvLvEev~~~~~~k~~~~~~~~~RVL~~~E~~l~~qs~Wk~~ 99 (117)
T 2c5l_C 21 RTVIKAPRVSTAQDVIQQTLCKAKYSLSILSNPNPSDYVLLEEVVKDTTNKKTTTPKSSQRVLLDQECVFQAQSKWKGA 99 (117)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHTTTSHHHHHSCCGGGEEEEEEEECC---------CEEEEECCTTSBHHHHHHTCSSC
T ss_pred eEEEEeCCCCcHHHHHHHHHHHcCCccccccCCCchHeEEEEEEcccCCCccccccCceEEecCCCCCHHHHHHhhCcC
Confidence 3444589999999999765555453 59999999873 3 699999999999999999843
No 5
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=97.59 E-value=0.00018 Score=49.55 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=54.8
Q ss_pred eEeEEE-cCeeEEEeccCCcccHHHHHHHHHhhcC--CCCceEEEEeecC--ceeecCCCCcchhhhhhccc
Q psy8537 2 ELKVWV-EGMQKIVSGVTESTTCQDIVFALAHATG--KTGRYTLIERFRN--NERLLTPQDHPIKLIKFSHK 68 (102)
Q Consensus 2 ELkVWV-~G~eR~V~GvT~~TTC~DVV~ALaq~~G--~~grY~LVEKwRg--~ER~L~p~e~pl~iL~~W~a 68 (102)
.++|+- ||--| .-.|.+..|+.||.+.|+.-.+ ..-.++|+|.+-+ .||.|-.+|.++++|..|.-
T Consensus 11 vvkvf~~Dgssk-si~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~ 81 (100)
T 1wgr_A 11 VVKVYSEDGACR-SVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPV 81 (100)
T ss_dssp EEEEEETTSCEE-EEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCS
T ss_pred EEEEEecCCCEE-EEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCcc
Confidence 467776 45554 4479999999999999998765 4567999999996 99999999999999998853
No 6
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=97.39 E-value=0.0004 Score=54.49 Aligned_cols=67 Identities=13% Similarity=0.182 Sum_probs=54.6
Q ss_pred eEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcC--CCCceEEEEeecC--ceeecCCCCcchhhhhhccc
Q psy8537 2 ELKVWVEGMQKIVSGVTESTTCQDIVFALAHATG--KTGRYTLIERFRN--NERLLTPQDHPIKLIKFSHK 68 (102)
Q Consensus 2 ELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G--~~grY~LVEKwRg--~ER~L~p~e~pl~iL~~W~a 68 (102)
.++|+++.--=..--|++.||+.||+..|+...+ .+...+|+|.+-+ .||+|-++|+.++++..|..
T Consensus 33 ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ 103 (281)
T 4gmv_A 33 VIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTR 103 (281)
T ss_dssp EEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCT
T ss_pred EEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhccc
Confidence 4788885433334469999999999999988654 4566999999987 59999999999999998865
No 7
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=97.21 E-value=0.0011 Score=48.33 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=53.7
Q ss_pred eEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcC--CCCceEEEEeecC--ceeecCCCCcchhhhhhcccCc
Q psy8537 2 ELKVWVEGMQKIVSGVTESTTCQDIVFALAHATG--KTGRYTLIERFRN--NERLLTPQDHPIKLIKFSHKFT 70 (102)
Q Consensus 2 ELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G--~~grY~LVEKwRg--~ER~L~p~e~pl~iL~~W~awg 70 (102)
.++|+..+..-..--|++.+|+.||+..|+...+ ....++|+|.+.+ .||.|-++|++++++..|....
T Consensus 36 ~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l~E~~~~~~ler~l~d~E~v~~v~~~w~~~~ 108 (291)
T 3tca_A 36 VVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCLYEIYPELQIERVFEDHENVVEVLSDWTRDT 108 (291)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEEEEEETTTTEEEECCTTSBHHHHHTTSCTTC
T ss_pred EEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEEEEeccccccceecccchhHHHHHHhhcccc
Confidence 3566664443333458899999999999998765 3356999999975 5999999999999999887643
No 8
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=97.07 E-value=0.0015 Score=50.55 Aligned_cols=66 Identities=20% Similarity=0.247 Sum_probs=49.7
Q ss_pred eEeEEEcCeeEEEeccCCcccHHHHHHHHHhhc--CCCCceEEEEeecCc--eeecCCCCcchhhhhhcc
Q psy8537 2 ELKVWVEGMQKIVSGVTESTTCQDIVFALAHAT--GKTGRYTLIERFRNN--ERLLTPQDHPIKLIKFSH 67 (102)
Q Consensus 2 ELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~--G~~grY~LVEKwRg~--ER~L~p~e~pl~iL~~W~ 67 (102)
.++|+.+..--..--|++.+|+.||...|+.-. ..+...+|+|.+-+. ||.|-++|+.++++..|.
T Consensus 10 ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~ev~~~~~ 79 (256)
T 3hk0_A 10 DVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQVESTMA 79 (256)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHHHHHTCC
T ss_pred EEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHHHHhccC
Confidence 468888544344446999999999999998643 345779999999655 999999999999988663
No 9
>2bye_A Phospholipase C, epsilon 1; RAS association domain, ubiquitin superfold; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=96.90 E-value=0.0021 Score=45.47 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=46.5
Q ss_pred EEEeccCCcccHHHHHHHHHhhcCC----CCceEEEEe-----ec-------CceeecCCCCcchhhhhhcccC
Q psy8537 12 KIVSGVTESTTCQDIVFALAHATGK----TGRYTLIER-----FR-------NNERLLTPQDHPIKLIKFSHKF 69 (102)
Q Consensus 12 R~V~GvT~~TTC~DVV~ALaq~~G~----~grY~LVEK-----wR-------g~ER~L~p~e~pl~iL~~W~aw 69 (102)
-.|--++..||-+||+...++..+. +.+|+|+|- |- -+-|.|+|+|+|++++..|+.=
T Consensus 23 ftI~~~~~~STAkdvl~qaL~ka~~~~~~~~~YvL~EE~v~~~~ek~~~~~~~~qRvL~~~E~vl~aqs~Wk~~ 96 (110)
T 2bye_A 23 FTVFTINGGTKAKQLLQQILTNEQDIKPVTTDYFLMEEKYFISKEKNECRKQPFQRAIGPEEEIMQILSSWFPE 96 (110)
T ss_dssp SEEEECCTTCCHHHHHHHHHCCSSSSCCCCCSEEEEEECCCCSSSSCSCTTSCCEEEECSSSCHHHHHHHCCTT
T ss_pred cEEEEecCCCcHHHHHHHHHHHhcCCCCCcccEEEEEEEeccccccCCccCCceeeecCCCccHHHHHhhhCCC
Confidence 3455689999999999877766554 589999997 21 3559999999999999999864
No 10
>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus}
Probab=96.87 E-value=0.0012 Score=49.31 Aligned_cols=52 Identities=17% Similarity=0.377 Sum_probs=44.4
Q ss_pred cCCcccHHHHHHHHHhhc---CCCCceEEEEe-ecCce---eecCCCCcchhhhhhccc
Q psy8537 17 VTESTTCQDIVFALAHAT---GKTGRYTLIER-FRNNE---RLLTPQDHPIKLIKFSHK 68 (102)
Q Consensus 17 vT~~TTC~DVV~ALaq~~---G~~grY~LVEK-wRg~E---R~L~p~e~pl~iL~~W~a 68 (102)
|+..||..|||.+|++-. ..|..|+|-|+ -++-| |.|..+|+||-.--+|++
T Consensus 93 VsS~tTt~eVI~~LL~KFkV~dnP~kFALye~vh~~gev~~RKL~d~E~PL~lrL~~Gp 151 (163)
T 3ddc_B 93 ISSTTTVSEVIQGLLDKFMVVDNPQKFALFKRIHKDGQVLFQKLSIADYPLYLRLLAGP 151 (163)
T ss_dssp EETTCCHHHHHHHHHHHTTCCSCGGGEEEEEEEEETTEEEEEECCTTCCHHHHHHHHCS
T ss_pred EccCCcHHHHHHHHHHHhcccCChhheEEEEEEccCCcEEEEECCCcCcCHhHHhhcCC
Confidence 678999999999999963 47899999994 55454 999999999998888876
No 11
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=96.50 E-value=0.011 Score=48.33 Aligned_cols=70 Identities=13% Similarity=0.157 Sum_probs=57.4
Q ss_pred eEeEEE-cCeeEEEeccCCcccHHHHHHHHHhhcCCC---CceEEEEeecCceeecCCCCcchhhhhhcccCccC
Q psy8537 2 ELKVWV-EGMQKIVSGVTESTTCQDIVFALAHATGKT---GRYTLIERFRNNERLLTPQDHPIKLIKFSHKFTDN 72 (102)
Q Consensus 2 ELkVWV-~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~---grY~LVEKwRg~ER~L~p~e~pl~iL~~W~awg~E 72 (102)
.++|.. ||.. ....+...||++||+..+++.+|-. .-|.|.+.-.+.||.|+|++.++++++.|-.-..+
T Consensus 218 ~~~V~l~dg~~-~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~~~~~~~~L~~~~~i~D~~~~we~~~~~ 291 (555)
T 3au4_A 218 TSTVYCHGGGS-CKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDKAIESRTVVADVLAKFEKLAAT 291 (555)
T ss_dssp EEEEEETTSCE-EEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEESSSCEEECCTTSBHHHHHHHHHHHTTS
T ss_pred ceEEEecCCCe-EEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEEeCCeeEecCCCCchhHHHHHHHHHhhc
Confidence 466777 5554 5568999999999999999998864 36899998889999999999999999888765443
No 12
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=93.96 E-value=0.064 Score=40.90 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=51.1
Q ss_pred CeEeEEEcCeeEEEeccCC--cccHHHHHHHHHhhcCCC----CceEEEEeecCceeecCCCCcchhhhhhcccC
Q psy8537 1 MELKVWVEGMQKIVSGVTE--STTCQDIVFALAHATGKT----GRYTLIERFRNNERLLTPQDHPIKLIKFSHKF 69 (102)
Q Consensus 1 MELkVWV~G~eR~V~GvT~--~TTC~DVV~ALaq~~G~~----grY~LVEKwRg~ER~L~p~e~pl~iL~~W~aw 69 (102)
+.+.|..-+-......+.. +||.+||+.+ +|-+ .-|.|.+.-.+.|++|-|+++|+++++.|...
T Consensus 6 ~~i~V~l~dg~~~~~~i~~~~~tt~~el~e~----lgL~~~~~~~FaL~~~~~~~e~~L~~~~~~~d~~~~W~~~ 76 (322)
T 4dxa_B 6 EKVRIYRMDGSYRSVELKHGNNTTVQQIMEG----MRLSQETQQYFTIWICSENLSLQLKPYHKPLQHVRDWPEI 76 (322)
T ss_dssp CEEEEECTTSCEEEEECTTGGGCCHHHHHTT----SSCCTTGGGGEEEEEECSSCEEECCTTCCHHHHHHTHHHH
T ss_pred eEEEEEEECCcEEEEEEcCCCCCcHHHHHHH----hCcCccccCeeEEEEECCccccccCccccHHHHHHHHHHH
Confidence 3567777444555678888 9999999654 4532 35999999999999999999999999999764
No 13
>3ec8_A Putative uncharacterized protein FLJ10324; beta barrel, helix, structural genomics, structural genomics consortium, SGC, cell adhesion; 2.60A {Homo sapiens}
Probab=92.40 E-value=0.15 Score=38.12 Aligned_cols=52 Identities=13% Similarity=0.321 Sum_probs=40.7
Q ss_pred cCCcccHHHHHHHHHhhcC----CCCceEEEEe----------ecC-ceeecCCCCcchhhhhhccc
Q psy8537 17 VTESTTCQDIVFALAHATG----KTGRYTLIER----------FRN-NERLLTPQDHPIKLIKFSHK 68 (102)
Q Consensus 17 vT~~TTC~DVV~ALaq~~G----~~grY~LVEK----------wRg-~ER~L~p~e~pl~iL~~W~a 68 (102)
.|.+.|-.++|..-++-.| .+..|+|++. ||. ..|.|+++||||.+...|.+
T Consensus 56 as~rstA~elVkEALERYgL~ke~~~~y~Lcdvig~pG~~~~~w~~e~~rvLgd~EcPL~iq~lW~p 122 (166)
T 3ec8_A 56 ATGTSSARELVKEALERYALDPRQAGQYVLCDVVGQAGDAGQRWQARCFRVFGDSEKPLLIQELWKP 122 (166)
T ss_dssp EETTCCHHHHHHHHHHHTTSCGGGGGGEEEEEEEC--------CCCCEEEECCTTCCHHHHHHHCCC
T ss_pred ccccccHHHHHHHHHHHhccCcCCcceeEEEEeecCCCCCcccccccceeecCCCCCceeehcccCC
Confidence 4567778887777677666 4667999885 433 67999999999999999987
No 14
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=92.39 E-value=0.17 Score=32.18 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=39.2
Q ss_pred CeEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCCCceEEEEeecCceeecCCCC
Q psy8537 1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQD 57 (102)
Q Consensus 1 MELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~grY~LVEKwRg~ER~L~p~e 57 (102)
|.++|.+.|.......+.+.+|.+|++..| |-|.+-++|++ +.|++|+++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~L----gl~~~~VvV~v---NG~~v~~d~ 50 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRAV----DLSPHEVTVLV---DGRPVPEDQ 50 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHTT----CCCSSCCCEEC---CCCCCCTTS
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHHc----CCCcceEEEEE---CCEECCHHH
Confidence 899999999987778899999999998776 65555556665 566777774
No 15
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=90.03 E-value=0.79 Score=39.15 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=55.6
Q ss_pred eEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcC--CCCceEEEEeecCceeec-CCCCcchhhhhhcccCccCCCC
Q psy8537 2 ELKVWVEGMQKIVSGVTESTTCQDIVFALAHATG--KTGRYTLIERFRNNERLL-TPQDHPIKLIKFSHKFTDNTSG 75 (102)
Q Consensus 2 ELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G--~~grY~LVEKwRg~ER~L-~p~e~pl~iL~~W~awg~E~~~ 75 (102)
.++|..=+-....+.+...||++||+..+++.+| +..-|-|...-.+.++.| .+++..+++++.|-.+.+++..
T Consensus 265 ~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~~~~dk~~sll~~~e~vlD~l~~~E~~~k~~~~ 341 (655)
T 3pvl_A 265 MLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYIALFDKVSSLGSGSDHVMDAISQCEQYAKEQGA 341 (655)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEEEETTEEEEEETSSCBHHHHHHHHHHHHHTTTC
T ss_pred EEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEEecCCceeecccCceEeecHHHHHHHHHHhhcc
Confidence 4667764444566799999999999999999887 445688877655555555 6788889999999877666543
No 16
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=84.83 E-value=1.7 Score=33.86 Aligned_cols=66 Identities=8% Similarity=0.011 Sum_probs=48.0
Q ss_pred EeEEEcCee----EEEeccCCcccHHHHHHHHHhhcCCC--CceEEEEeec--CceeecCCCCcchhhhhhccc
Q psy8537 3 LKVWVEGMQ----KIVSGVTESTTCQDIVFALAHATGKT--GRYTLIERFR--NNERLLTPQDHPIKLIKFSHK 68 (102)
Q Consensus 3 LkVWV~G~e----R~V~GvT~~TTC~DVV~ALaq~~G~~--grY~LVEKwR--g~ER~L~p~e~pl~iL~~W~a 68 (102)
++|+..+-+ ....-+...|||+||+..+++.+|-. .-|-|...=- +--+-|+|++..-+.+..|.+
T Consensus 10 l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~~~~k~~~ 83 (375)
T 2al6_A 10 FHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNVREKFEL 83 (375)
T ss_dssp ECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHHHHHHHHT
T ss_pred EEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhhhhhhhhc
Confidence 345554433 45556889999999999999998753 4588887653 223569999888888888765
No 17
>2fb0_A Conserved hypothetical protein; SAD, bacteroides thetaiotaom structural genomics, PSI, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron}
Probab=82.49 E-value=0.35 Score=29.56 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=13.9
Q ss_pred CCCCceEEEEeecCce
Q psy8537 35 GKTGRYTLIERFRNNE 50 (102)
Q Consensus 35 G~~grY~LVEKwRg~E 50 (102)
.+|++|+++|+|++-|
T Consensus 48 ~~p~~~~~~e~w~~~~ 63 (94)
T 2fb0_A 48 TRRDVFMICETWQNAE 63 (94)
T ss_dssp SCTTEEEEEEEESSHH
T ss_pred CCCCEEEEEEEECCHH
Confidence 5789999999999865
No 18
>1x7v_A PA3566 protein, APC5058; structural genomics, protein structure initiative, midwest center for structural genomics, alpha-beta plait, PSI; 1.78A {Pseudomonas aeruginosa} SCOP: d.58.4.11
Probab=79.55 E-value=0.51 Score=28.99 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=17.2
Q ss_pred CCCCceEEEEeecC---ceeecC
Q psy8537 35 GKTGRYTLIERFRN---NERLLT 54 (102)
Q Consensus 35 G~~grY~LVEKwRg---~ER~L~ 54 (102)
.+|++|+++|+|++ ++.++.
T Consensus 50 ~~p~~~~~~e~w~~~~a~~~h~~ 72 (99)
T 1x7v_A 50 HDSHLFYMIEQWRDDAALERHQN 72 (99)
T ss_dssp SCTTEEEEEEEESSHHHHHHHHT
T ss_pred CCCCEEEEEEEECCHHHHHHHhc
Confidence 57899999999999 777775
No 19
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=79.17 E-value=7.5 Score=24.01 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=33.5
Q ss_pred CeEeE-EEcCeeEEEeccCCcccHHHHHHHHHhhcCC-CCceEEEE
Q psy8537 1 MELKV-WVEGMQKIVSGVTESTTCQDIVFALAHATGK-TGRYTLIE 44 (102)
Q Consensus 1 MELkV-WV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~-~grY~LVE 44 (102)
|.|.| +-+| ++.|..++..+|-+||-.++++..|- +.++.|.-
T Consensus 1 m~i~vr~~~G-~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~ 45 (86)
T 2kzr_A 1 WRVRCKAKGG-THLLQGLSSRTRLRELQGQIAAITGIAPGSQRILV 45 (86)
T ss_dssp CCEEEEETTE-EEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEE
T ss_pred CEEEEEcCCC-CEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEe
Confidence 77888 5567 55677799999999999999998884 46666653
No 20
>3gz7_A Putative antibiotic biosynthesis monooxygenase; NP_888398.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 2.15A {Bordetella bronchiseptica}
Probab=78.73 E-value=0.52 Score=31.38 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=16.1
Q ss_pred cCCCCceEEEEeecCceeec
Q psy8537 34 TGKTGRYTLIERFRNNERLL 53 (102)
Q Consensus 34 ~G~~grY~LVEKwRg~ER~L 53 (102)
..+|++|+++|+|++.|-.-
T Consensus 63 ~~~p~~f~~~E~W~s~eal~ 82 (115)
T 3gz7_A 63 IEAPQRYTLVVDWETVDNHM 82 (115)
T ss_dssp SSSTTEEEEEEEESSHHHHH
T ss_pred CCCCCEEEEEEEECCHHHHH
Confidence 35789999999999976543
No 21
>2gff_A LSRG protein; dimeric alpha+beta barrel ferredoxin fold, sugar binding protein; 1.75A {Yersinia pestis} PDB: 3qmq_A
Probab=77.34 E-value=0.63 Score=29.38 Aligned_cols=16 Identities=13% Similarity=0.345 Sum_probs=14.0
Q ss_pred CCCCceEEEEeecCce
Q psy8537 35 GKTGRYTLIERFRNNE 50 (102)
Q Consensus 35 G~~grY~LVEKwRg~E 50 (102)
.+|+.|+++|+|++-|
T Consensus 45 ~~p~~~~~~E~w~d~~ 60 (106)
T 2gff_A 45 HIPTRFYIYEAYTDEA 60 (106)
T ss_dssp SCTTEEEEEEEESSHH
T ss_pred CCCCEEEEEEEECCHH
Confidence 5789999999999865
No 22
>3kkf_A Putative antibiotic biosynthesis monooxygenase; structural genomics, joint center for structural genomics, JCSG; HET: MSE P6G; 1.30A {Bacteroides thetaiotaomicron}
Probab=77.05 E-value=0.67 Score=29.48 Aligned_cols=17 Identities=12% Similarity=0.372 Sum_probs=14.5
Q ss_pred cCCCCceEEEEeecCce
Q psy8537 34 TGKTGRYTLIERFRNNE 50 (102)
Q Consensus 34 ~G~~grY~LVEKwRg~E 50 (102)
..+|++|+++|+|++-|
T Consensus 49 ~~~p~~~~~~E~w~d~~ 65 (105)
T 3kkf_A 49 KERPNHVTILEIYADEA 65 (105)
T ss_dssp SSCTTEEEEEEEESSHH
T ss_pred CCCCCEEEEEEEECCHH
Confidence 35789999999999865
No 23
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=75.60 E-value=8.7 Score=28.62 Aligned_cols=57 Identities=9% Similarity=0.084 Sum_probs=41.0
Q ss_pred EeEEE-cCeeEEEeccCCcccHHHHHHHHHhhcCC--CCceEEEEeecCceeecCCCCcchh
Q psy8537 3 LKVWV-EGMQKIVSGVTESTTCQDIVFALAHATGK--TGRYTLIERFRNNERLLTPQDHPIK 61 (102)
Q Consensus 3 LkVWV-~G~eR~V~GvT~~TTC~DVV~ALaq~~G~--~grY~LVEKwRg~ER~L~p~e~pl~ 61 (102)
++|.. ||. .-..+...||++||+..+++.+|- ..-|.|...-++..+-|+++....+
T Consensus 25 ~~V~lldg~--~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~ 84 (314)
T 1h4r_A 25 VRIVTMDAE--MEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLD 84 (314)
T ss_dssp EEEECSSCE--EEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGG
T ss_pred EEEEeCCce--EEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHH
Confidence 45554 673 337899999999999999998774 3457787775566666888755444
No 24
>3bm7_A Protein of unknown function with ferredoxin-like; ferredoxin-like fold, antibiotic biosynthesis monooxygenase, structural genomics; HET: MSE; 1.35A {Caulobacter crescentus}
Probab=74.78 E-value=0.81 Score=29.79 Aligned_cols=16 Identities=19% Similarity=0.509 Sum_probs=14.0
Q ss_pred CCCCceEEEEeecCce
Q psy8537 35 GKTGRYTLIERFRNNE 50 (102)
Q Consensus 35 G~~grY~LVEKwRg~E 50 (102)
..|++|+++|+|++-|
T Consensus 65 ~~p~~f~~~E~W~d~e 80 (115)
T 3bm7_A 65 TEEGVYKVLELYASMD 80 (115)
T ss_dssp SSTTEEEEEEEESSHH
T ss_pred CCCCEEEEEEEECCHH
Confidence 5789999999999865
No 25
>2bbe_A Hypothetical protein SO0527; MCSG, structural genomics, PSI, protein structure in midwest center for structural genomics; 1.97A {Shewanella oneidensis}
Probab=74.06 E-value=0.87 Score=28.89 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=16.8
Q ss_pred CCCCceEEEEeecC---ceeecC
Q psy8537 35 GKTGRYTLIERFRN---NERLLT 54 (102)
Q Consensus 35 G~~grY~LVEKwRg---~ER~L~ 54 (102)
.+|++|+++|+|++ +++++.
T Consensus 57 ~~p~~~~~~E~w~~~~a~~~H~~ 79 (108)
T 2bbe_A 57 DEPRRVTFVEKFVDIAAFDEHCA 79 (108)
T ss_dssp SSTTEEEEEEEESSHHHHHHHHT
T ss_pred CCCCEEEEEEEECCHHHHHHHhc
Confidence 57899999999999 666665
No 26
>1y0h_A Hypothetical protein RV0793; ferredoxin-like fold, alpha+beta sandwich with antiparallel sheet, structural genomics, PSI; 1.60A {Mycobacterium tuberculosis} SCOP: d.58.4.11
Probab=73.87 E-value=0.91 Score=27.97 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=17.2
Q ss_pred CCCCceEEEEeecC---ceeecC
Q psy8537 35 GKTGRYTLIERFRN---NERLLT 54 (102)
Q Consensus 35 G~~grY~LVEKwRg---~ER~L~ 54 (102)
.+|++|+++|+|++ ++.++.
T Consensus 48 ~~~~~~~~~e~w~~~~a~~~h~~ 70 (102)
T 1y0h_A 48 ADGGELVLFERYRSRIALDEHRG 70 (102)
T ss_dssp TTSSCEEEEEEESSHHHHHHHHT
T ss_pred CCCCEEEEEEEECCHHHHHHHhc
Confidence 57899999999999 777775
No 27
>1q8b_A Protein YJCS; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG, unknown function; 1.90A {Bacillus subtilis} SCOP: d.58.4.6
Probab=73.52 E-value=0.6 Score=29.78 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=16.4
Q ss_pred CCCCceEEEEeecC---ceeecC
Q psy8537 35 GKTGRYTLIERFRN---NERLLT 54 (102)
Q Consensus 35 G~~grY~LVEKwRg---~ER~L~ 54 (102)
.+|++|+++|+|++ ++.++.
T Consensus 58 ~~p~~~~~~E~w~d~~a~~~H~~ 80 (105)
T 1q8b_A 58 PSERKIMLWEIWENEEAVKIHFT 80 (105)
T ss_dssp GGGCEEEEEEEESSHHHHHHHTT
T ss_pred CCCCEEEEEEEECCHHHHHHHhc
Confidence 47899999999999 666664
No 28
>3e8o_A Uncharacterized protein with erredoxin-like fold; putative antibiotic biosynthesis monooxygenase; HET: MSE; 1.40A {Deinococcus radiodurans}
Probab=71.43 E-value=1.1 Score=29.44 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=14.4
Q ss_pred cCCCCceEEEEeecCce
Q psy8537 34 TGKTGRYTLIERFRNNE 50 (102)
Q Consensus 34 ~G~~grY~LVEKwRg~E 50 (102)
..+|++|+++|+|++-|
T Consensus 62 ~~dp~~f~~~E~W~d~e 78 (119)
T 3e8o_A 62 LSQPGHFLITEHWDNLG 78 (119)
T ss_dssp TTSTTEEEEEEEESSHH
T ss_pred CCCCCEEEEEEEECCHH
Confidence 35889999999999855
No 29
>2omo_A DUF176; structural genomics, APC6266, PSI-2, protein structure initi midwest center for structural genomics, MCSG, oxidoreductas; HET: MSE; 1.83A {Nitrosomonas europaea} SCOP: d.58.4.11
Probab=70.66 E-value=1.1 Score=29.67 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=15.9
Q ss_pred CCCCceEEEEeecC---ceeecC
Q psy8537 35 GKTGRYTLIERFRN---NERLLT 54 (102)
Q Consensus 35 G~~grY~LVEKwRg---~ER~L~ 54 (102)
.+|++|+++|+|++ ++.++.
T Consensus 67 ~dp~~f~~~E~W~d~eal~aH~~ 89 (124)
T 2omo_A 67 DDPTRFVLYEAYKTRKDAAAHKE 89 (124)
T ss_dssp SCTTEEEEEEEESSHHHHHHHTT
T ss_pred CCCCEEEEEEEECCHHHHHHHhC
Confidence 57899999999999 555543
No 30
>1iuj_A Hypothetical protein TT1380; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.60A {Thermus thermophilus} SCOP: d.58.4.5
Probab=67.96 E-value=1.5 Score=27.10 Aligned_cols=18 Identities=11% Similarity=0.344 Sum_probs=14.4
Q ss_pred CCCCceEEEEeecCceee
Q psy8537 35 GKTGRYTLIERFRNNERL 52 (102)
Q Consensus 35 G~~grY~LVEKwRg~ER~ 52 (102)
..|+.|+++++|++.|-.
T Consensus 45 ~~~~~~~~~~~W~s~~a~ 62 (106)
T 1iuj_A 45 NPGDPYVVMTLWESEEAF 62 (106)
T ss_dssp STTSCEEEEEEESCHHHH
T ss_pred CCCCeEEEEEEECCHHHH
Confidence 467999999999986543
No 31
>1tuv_A Protein YGIN; menadione oxidase, monooxygenase, CO-crystal with natural PR ferredoxin fold, unknown function; HET: VK3; 1.70A {Escherichia coli} SCOP: d.58.4.11 PDB: 1r6y_A
Probab=66.97 E-value=1.6 Score=28.33 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=13.6
Q ss_pred CCCCceEEEEeecCce
Q psy8537 35 GKTGRYTLIERFRNNE 50 (102)
Q Consensus 35 G~~grY~LVEKwRg~E 50 (102)
.+|+.|+++|+|++-|
T Consensus 55 ~~p~~~~~~E~W~d~~ 70 (114)
T 1tuv_A 55 MAPDSIVMIEQWESIA 70 (114)
T ss_dssp CCTTEEEEEEEESCHH
T ss_pred CCCCEEEEEEEECCHH
Confidence 5689999999999854
No 32
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=66.29 E-value=28 Score=25.43 Aligned_cols=56 Identities=11% Similarity=0.114 Sum_probs=39.0
Q ss_pred eEeEEE-cCeeEEEeccCCcccHHHHHHHHHhhcCC--CCceEEEEe-ecCceeecCCCCcc
Q psy8537 2 ELKVWV-EGMQKIVSGVTESTTCQDIVFALAHATGK--TGRYTLIER-FRNNERLLTPQDHP 59 (102)
Q Consensus 2 ELkVWV-~G~eR~V~GvT~~TTC~DVV~ALaq~~G~--~grY~LVEK-wRg~ER~L~p~e~p 59 (102)
.++|.. || . .-..+...||++|++..+++.+|- +.-|-|... -.|.++-|+++.+.
T Consensus 3 ~~~V~l~d~-~-~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l 62 (294)
T 1ef1_A 3 SVRVTTMDA-E-LEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKV 62 (294)
T ss_dssp EEEEEETTE-E-EEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBG
T ss_pred EEEEEECCc-e-EEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCH
Confidence 466776 55 3 337899999999999999998773 344777654 34555667776433
No 33
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=66.25 E-value=7.6 Score=22.83 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=23.8
Q ss_pred CeEeEEE-cCeeEEEeccCCcccHHHHHHHHHhhc
Q psy8537 1 MELKVWV-EGMQKIVSGVTESTTCQDIVFALAHAT 34 (102)
Q Consensus 1 MELkVWV-~G~eR~V~GvT~~TTC~DVV~ALaq~~ 34 (102)
|.++|.+ +|..+. +.+.+|..|++..+....
T Consensus 1 m~i~i~~p~g~~~~---~~~g~T~~dla~~i~~~l 32 (73)
T 2kmm_A 1 MEVMVFTPKGEIKR---LPQGATALDFAYSLHSDL 32 (73)
T ss_dssp CCEEEECTTCCEEE---ECTTCBHHHHHHHHCSHH
T ss_pred CeEEEEcCCCCEEE---cCCCCcHHHHHHHHhhcc
Confidence 8899999 787754 456899999998874443
No 34
>4hl9_A Antibiotic biosynthesis monooxygenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.93A {Rhodospirillum rubrum}
Probab=65.69 E-value=3.1 Score=27.89 Aligned_cols=16 Identities=19% Similarity=0.563 Sum_probs=13.5
Q ss_pred CCCCceEEEEeecCce
Q psy8537 35 GKTGRYTLIERFRNNE 50 (102)
Q Consensus 35 G~~grY~LVEKwRg~E 50 (102)
.+|++|+++|+|++-|
T Consensus 67 ~dp~~f~~~E~w~d~~ 82 (118)
T 4hl9_A 67 KDPGHFVFIEEWPDRA 82 (118)
T ss_dssp TEEEEEEEEEEESSHH
T ss_pred CCCCEEEEEEEeCCHH
Confidence 5788999999999854
No 35
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=63.86 E-value=29 Score=26.00 Aligned_cols=61 Identities=13% Similarity=-0.012 Sum_probs=40.5
Q ss_pred CeEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCC--CceEEEEee-cCceeecCCCCcchh
Q psy8537 1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKT--GRYTLIERF-RNNERLLTPQDHPIK 61 (102)
Q Consensus 1 MELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~--grY~LVEKw-Rg~ER~L~p~e~pl~ 61 (102)
|.++|..-+-....+.+...||++|++..+++.+|-. --|-|...= .+..+-|++.....+
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~ 81 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKK 81 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHH
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHH
Confidence 3567776333455678999999999999999988743 335665432 245566777644333
No 36
>2pd1_A Hypothetical protein; unknown function, NE2512 protein, structural genomics, APC72 2, protein structure initiative; 1.86A {Nitrosomonas europaea} SCOP: d.58.4.11
Probab=63.16 E-value=3.2 Score=25.64 Aligned_cols=19 Identities=11% Similarity=0.364 Sum_probs=15.9
Q ss_pred CCCceEEEEeecC---ceeecC
Q psy8537 36 KTGRYTLIERFRN---NERLLT 54 (102)
Q Consensus 36 ~~grY~LVEKwRg---~ER~L~ 54 (102)
+|++|+++|+|++ ++.++.
T Consensus 48 ~p~~~~~~E~w~~~~a~~~H~~ 69 (104)
T 2pd1_A 48 GPSTFGVFDAFADEAGRQAHLN 69 (104)
T ss_dssp SSSEEEEEEEESSHHHHHHHHT
T ss_pred CCCEEEEEEEECCHHHHHHHhC
Confidence 7899999999999 666664
No 37
>4dpo_A Conserved protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.73A {Methanosarcina mazei}
Probab=63.05 E-value=1.1 Score=29.57 Aligned_cols=16 Identities=13% Similarity=0.368 Sum_probs=13.6
Q ss_pred CCCCceEEEEeecCce
Q psy8537 35 GKTGRYTLIERFRNNE 50 (102)
Q Consensus 35 G~~grY~LVEKwRg~E 50 (102)
.+|++|+++|+|++-|
T Consensus 69 ~dp~~f~~~E~W~d~e 84 (119)
T 4dpo_A 69 ENPEILTMLEEWKDEG 84 (119)
T ss_dssp TEEEEEEEEEEESSHH
T ss_pred CCCCEEEEEEEECCHH
Confidence 5788999999999844
No 38
>4dn9_A Antibiotic biosynthesis monooxygenase; structural genomics,protein structure initiative, NEW YORK S genomix research consortium, nysgrc; 2.05A {Chloroflexus aurantiacus}
Probab=63.00 E-value=1.1 Score=29.94 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=13.9
Q ss_pred cCCCCceEEEEeecCce
Q psy8537 34 TGKTGRYTLIERFRNNE 50 (102)
Q Consensus 34 ~G~~grY~LVEKwRg~E 50 (102)
..+|++|+++|+|++-|
T Consensus 63 ~~dp~~f~~~E~W~d~e 79 (122)
T 4dn9_A 63 PKDPDAIWITEVWDSPE 79 (122)
T ss_dssp TTEEEEEEEEEEESCHH
T ss_pred CCCCCEEEEEEEECCHH
Confidence 35789999999999854
No 39
>2zdo_A Heme-degrading monooxygenase ISDG; ruffling, protein-substrate complex, cytoplasm, iron, metal-binding, oxidoreductase; HET: HEM; 1.80A {Staphylococcus aureus} PDB: 1xbw_A
Probab=59.31 E-value=2.6 Score=26.72 Aligned_cols=36 Identities=11% Similarity=0.208 Sum_probs=23.0
Q ss_pred cCCCC--ceEEEEeecCceeecCCCCcchhhhhhcccCcc
Q psy8537 34 TGKTG--RYTLIERFRNNERLLTPQDHPIKLIKFSHKFTD 71 (102)
Q Consensus 34 ~G~~g--rY~LVEKwRg~ER~L~p~e~pl~iL~~W~awg~ 71 (102)
...|+ +|+++++|++-|- +... +-....+.|.+++.
T Consensus 46 ~~~~~~~~~~~~~~W~s~ea-~~a~-~~s~~f~~~~~~~~ 83 (109)
T 2zdo_A 46 LEQEDFDEVKILTVWKSKQA-FTDW-LKSDVFKAAHKHVR 83 (109)
T ss_dssp TTCSSEEEEEEEEEESCHHH-HHHH-HTSHHHHHHHTTCC
T ss_pred CCCCCceEEEEEEEECCHHH-HHHH-HcCHHHHHHHHhhh
Confidence 35667 9999999999874 3222 11344566666663
No 40
>2ril_A Antibiotic biosynthesis monooxygenase; YP_001095275.1, putative monooxygenase, antibiotic biosynthe monooxygenase, structural genomics; HET: MSE; 1.26A {Shewanella loihica}
Probab=59.02 E-value=2.4 Score=26.41 Aligned_cols=20 Identities=5% Similarity=0.235 Sum_probs=14.9
Q ss_pred CCCCce--EEEEeecCceeecC
Q psy8537 35 GKTGRY--TLIERFRNNERLLT 54 (102)
Q Consensus 35 G~~grY--~LVEKwRg~ER~L~ 54 (102)
..|++| +++++|++.|-.-.
T Consensus 49 ~~~~~~~~~~~~~W~s~ea~~a 70 (99)
T 2ril_A 49 DEGATYQLINVAIWQSEADFYQ 70 (99)
T ss_dssp STTSSCSEEEEEEESCHHHHHH
T ss_pred CCCCeEEEEEEEEECCHHHHHH
Confidence 467765 99999999775444
No 41
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=57.90 E-value=15 Score=29.34 Aligned_cols=54 Identities=17% Similarity=0.122 Sum_probs=41.2
Q ss_pred ccCCcccHHHHHHHHH--hhcC----CCCceEEEEeec--CceeecCCCCcchhhhhhcccC
Q psy8537 16 GVTESTTCQDIVFALA--HATG----KTGRYTLIERFR--NNERLLTPQDHPIKLIKFSHKF 69 (102)
Q Consensus 16 GvT~~TTC~DVV~ALa--q~~G----~~grY~LVEKwR--g~ER~L~p~e~pl~iL~~W~aw 69 (102)
.+...||..|||..++ ..+| .+..|-|...-. +.-+-|.|++.+.+++.+|..-
T Consensus 43 ~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v~~k~~~~ 104 (392)
T 4eku_A 43 KCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGEVQDKYECL 104 (392)
T ss_dssp EEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHHHHHHSTTT
T ss_pred EeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHHHHhhhhhc
Confidence 4678999999999998 4555 455788876543 3447899999999999888653
No 42
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=56.93 E-value=20 Score=24.02 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=35.2
Q ss_pred CeEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcC-CCCceEEEEe
Q psy8537 1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATG-KTGRYTLIER 45 (102)
Q Consensus 1 MELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G-~~grY~LVEK 45 (102)
|.+.|--.+-.|...-+|+.||=.||+..=++-.| ++.+|.|--.
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~ 55 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQ 55 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEET
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeC
Confidence 45666666788899999999999999887777665 5678888643
No 43
>1sqe_A Hypothetical protein PG130; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.50A {Staphylococcus aureus} SCOP: d.58.4.5 PDB: 2zdp_A* 3lgm_A* 3lgn_A* 3qgp_A*
Probab=55.47 E-value=2.9 Score=26.45 Aligned_cols=17 Identities=0% Similarity=0.223 Sum_probs=14.2
Q ss_pred CCC--CceEEEEeecCcee
Q psy8537 35 GKT--GRYTLIERFRNNER 51 (102)
Q Consensus 35 G~~--grY~LVEKwRg~ER 51 (102)
..| +.|+++++|++.|-
T Consensus 45 ~~~~~~~~~~~~~W~s~ea 63 (109)
T 1sqe_A 45 NTEDTDEVKILTIWESEDS 63 (109)
T ss_dssp TCSSSEEEEEEEEESCHHH
T ss_pred CCCCCcEEEEEEEECCHHH
Confidence 456 89999999999774
No 44
>3hx9_A Protein RV3592; DI-heme, beta barrel, dimer, oxidoreductase; HET: HEM; 1.75A {Mycobacterium tuberculosis}
Probab=55.46 E-value=2.6 Score=28.60 Aligned_cols=17 Identities=18% Similarity=0.446 Sum_probs=14.1
Q ss_pred CCCCceEEEEeecCcee
Q psy8537 35 GKTGRYTLIERFRNNER 51 (102)
Q Consensus 35 G~~grY~LVEKwRg~ER 51 (102)
..|++|+++++|++.|-
T Consensus 46 ~~p~~yv~~~~WeS~ea 62 (124)
T 3hx9_A 46 KGEERYFVVTHWESDEA 62 (124)
T ss_dssp ESCCSEEEEEEESCHHH
T ss_pred CCCCEEEEEEEECCHHH
Confidence 36799999999998664
No 45
>3kg0_A Snoab; polyketide, anthracycline, oxygenase, cofactor-independent, oxidoreductase; 1.70A {Streptomyces nogalater} PDB: 3kg1_A 3kng_A
Probab=54.93 E-value=3.5 Score=27.89 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=14.1
Q ss_pred cCCCCceEEEEeecCce
Q psy8537 34 TGKTGRYTLIERFRNNE 50 (102)
Q Consensus 34 ~G~~grY~LVEKwRg~E 50 (102)
...|++|++++.|++.|
T Consensus 65 ~~~p~~yv~~~~W~s~e 81 (128)
T 3kg0_A 65 RDKDNSYVNIAVWTDHD 81 (128)
T ss_dssp TTCSSEEEEEEEESSHH
T ss_pred CCCCCEEEEEEEECCHH
Confidence 34678999999999866
No 46
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=52.02 E-value=25 Score=26.90 Aligned_cols=44 Identities=20% Similarity=0.325 Sum_probs=32.6
Q ss_pred eEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcC--CCCceEEEEe
Q psy8537 2 ELKVWVEGMQKIVSGVTESTTCQDIVFALAHATG--KTGRYTLIER 45 (102)
Q Consensus 2 ELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G--~~grY~LVEK 45 (102)
.++|..-+-....+.+...||++|++..+++.+| .+--|.|...
T Consensus 87 ~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~ 132 (371)
T 3ivf_A 87 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRE 132 (371)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECC
T ss_pred EEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEE
Confidence 3566664445556689999999999999999876 4455777654
No 47
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=50.05 E-value=34 Score=20.13 Aligned_cols=34 Identities=6% Similarity=0.104 Sum_probs=23.6
Q ss_pred eEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCCCceEEEE
Q psy8537 4 KVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIE 44 (102)
Q Consensus 4 kVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~grY~LVE 44 (102)
++.|+|+++.+ .+.+|.+|++..| +.+.+.+.|+
T Consensus 2 ~i~vNg~~~~~---~~~~tv~~ll~~l----~~~~~~v~va 35 (66)
T 1f0z_A 2 QILFNDQAMQC---AAGQTVHELLEQL----DQRQAGAALA 35 (66)
T ss_dssp CEEESSCEECC---CTTCCHHHHHHHH----TCCCSSEEEE
T ss_pred EEEECCEEEEc---CCCCcHHHHHHHc----CCCCCCEEEE
Confidence 57889988754 5678999999887 3334444454
No 48
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=46.57 E-value=29 Score=29.44 Aligned_cols=37 Identities=14% Similarity=0.280 Sum_probs=31.4
Q ss_pred ccCCcccHHHHHHHHHhhcCCCCceEEEEeecCceee
Q psy8537 16 GVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERL 52 (102)
Q Consensus 16 GvT~~TTC~DVV~ALaq~~G~~grY~LVEKwRg~ER~ 52 (102)
-+...||.++||...++..|-+..|.|+|.=-.=|+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~~~~ 404 (694)
T 3cf6_E 368 RVPVAASVKEVISAVADKLGSGEGLIIVKMNSGGEKV 404 (694)
T ss_dssp EEETTCBHHHHHHHHHHHHTCCSCEEEEEECTTSCEE
T ss_pred EeeccccHHHHHHHHHHHhCCcccceEEEEeecCccc
Confidence 3678899999999999999998899999987555555
No 49
>3mcs_A Putative monooxygenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.55A {Fusobacterium nucleatum subsp}
Probab=45.48 E-value=6.6 Score=29.01 Aligned_cols=21 Identities=5% Similarity=0.056 Sum_probs=16.5
Q ss_pred cCCCCceEEEEeecC---ceeecC
Q psy8537 34 TGKTGRYTLIERFRN---NERLLT 54 (102)
Q Consensus 34 ~G~~grY~LVEKwRg---~ER~L~ 54 (102)
..+|++|+++|.|++ ++-|+.
T Consensus 50 ~~~p~~fv~~E~y~d~~A~~~H~~ 73 (219)
T 3mcs_A 50 ERDKTTSYIVEIYNDYLAFSNHTK 73 (219)
T ss_dssp CSSSCEEEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEEEEEECCHHHHHHHhC
Confidence 468999999999999 455553
No 50
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=42.86 E-value=23 Score=21.92 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=23.6
Q ss_pred eEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCCCceEEEEe
Q psy8537 4 KVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIER 45 (102)
Q Consensus 4 kVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~grY~LVEK 45 (102)
+|.|+|+++-+ +.+|-+|++..| |-+.+.+.|+.
T Consensus 2 ~I~vNG~~~e~----~~~Tl~~LL~~l----~~~~~~vAV~v 35 (73)
T 2kl0_A 2 LVTINGEQREV----QSASVAALMTEL----DCTGGHFAVAL 35 (73)
T ss_dssp CEEETTEEECC----CCSBHHHHHHHT----TCCSSSCEEEE
T ss_pred EEEECCEEEEc----CCCcHHHHHHHc----CCCCCcEEEEE
Confidence 67889998865 447888877765 55555555664
No 51
>3mcs_A Putative monooxygenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.55A {Fusobacterium nucleatum subsp}
Probab=42.55 E-value=4.8 Score=29.78 Aligned_cols=16 Identities=13% Similarity=0.374 Sum_probs=13.8
Q ss_pred cCCCCceEEEEeecCc
Q psy8537 34 TGKTGRYTLIERFRNN 49 (102)
Q Consensus 34 ~G~~grY~LVEKwRg~ 49 (102)
..+|++|+++|.|++-
T Consensus 156 ~~~p~~f~~~E~w~d~ 171 (219)
T 3mcs_A 156 RRNFNKWCLFEVYKDI 171 (219)
T ss_dssp TTEEEEEEEEEEESSH
T ss_pred CCCCCEEEEEEEECCH
Confidence 4678999999999984
No 52
>3f44_A Putative monooxygenase; YP_193413.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.55A {Lactobacillus acidophilus ncfm}
Probab=41.87 E-value=4.1 Score=29.67 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=16.7
Q ss_pred cCCCCceEEEEeecC---ceeecC
Q psy8537 34 TGKTGRYTLIERFRN---NERLLT 54 (102)
Q Consensus 34 ~G~~grY~LVEKwRg---~ER~L~ 54 (102)
..+|++|+++|.|++ ++.++.
T Consensus 160 ~~~p~~f~~~E~w~d~~Al~aH~~ 183 (220)
T 3f44_A 160 IDNPNEWYFIEVYANDEAYDIHVK 183 (220)
T ss_dssp TTEEEEEEEEEEESSHHHHHHHTT
T ss_pred CCCCCEEEEEEEECCHHHHHHHhc
Confidence 357899999999999 566654
No 53
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=37.58 E-value=80 Score=26.39 Aligned_cols=53 Identities=9% Similarity=0.097 Sum_probs=37.6
Q ss_pred EeEEE-cCeeEEEeccCCcccHHHHHHHHHhhcCCC--CceEEEEe-ecCceeecCCCC
Q psy8537 3 LKVWV-EGMQKIVSGVTESTTCQDIVFALAHATGKT--GRYTLIER-FRNNERLLTPQD 57 (102)
Q Consensus 3 LkVWV-~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~--grY~LVEK-wRg~ER~L~p~e 57 (102)
++|.. ||. .-..+...||++||+..+++.+|-. .-|-|.-. -.|..+-|+|..
T Consensus 7 v~V~llDgt--~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k 63 (575)
T 2i1j_A 7 VRVTTMDAE--LEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYK 63 (575)
T ss_dssp EEEECSSCE--EEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTS
T ss_pred EEEEeCCCe--EEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccc
Confidence 45555 674 3378899999999999999988753 34666542 466667777763
No 54
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=37.02 E-value=57 Score=18.37 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=37.0
Q ss_pred CeEeEEE-cCeeEEEeccCCcccHHHHHHHHHhhcCCC-CceEEEEeecCceeecCCCCcchhh
Q psy8537 1 MELKVWV-EGMQKIVSGVTESTTCQDIVFALAHATGKT-GRYTLIERFRNNERLLTPQDHPIKL 62 (102)
Q Consensus 1 MELkVWV-~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~-grY~LVEKwRg~ER~L~p~e~pl~i 62 (102)
|.|.|=- +|.... ..+...+|-+|+-..+++..|-| .+..|+ ++| +.|.. ++.+..
T Consensus 1 M~i~vk~~~g~~~~-i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~--~~g--~~L~d-~~tL~~ 58 (76)
T 3a9j_A 1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAG--KQLED-GRTLSD 58 (76)
T ss_dssp CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGEEEE--ETT--EECCT-TCBTGG
T ss_pred CEEEEEcCCCCEEE-EEECCCCcHHHHHHHHHHHHCcCHHHeEEE--ECC--eECCC-CCcHHH
Confidence 6777754 565444 46999999999999999988854 555554 234 45654 344443
No 55
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=35.04 E-value=39 Score=21.81 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=19.5
Q ss_pred EeEEEcCeeEEEeccCCc-ccHHHHHHHH
Q psy8537 3 LKVWVEGMQKIVSGVTES-TTCQDIVFAL 30 (102)
Q Consensus 3 LkVWV~G~eR~V~GvT~~-TTC~DVV~AL 30 (102)
++|.|+|+++-+ .+. +|.+|++..|
T Consensus 21 M~I~vNGe~~el---~~~~~Tv~dLL~~L 46 (87)
T 1tyg_B 21 HMLQLNGKDVKW---KKDTGTIQDLLASY 46 (87)
T ss_dssp -CEEETTEEECC---SSSCCBHHHHHHHT
T ss_pred eEEEECCEEEEC---CCCCCcHHHHHHHh
Confidence 478899998764 565 8999999887
No 56
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=34.88 E-value=69 Score=18.66 Aligned_cols=33 Identities=15% Similarity=0.309 Sum_probs=22.6
Q ss_pred eEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCCCceEEEE
Q psy8537 4 KVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIE 44 (102)
Q Consensus 4 kVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~grY~LVE 44 (102)
++.|+|+++-+ +.+|.+|++..|. .+.+.+.|+
T Consensus 1 ~i~vNg~~~~~----~~~tv~~ll~~l~----~~~~~v~va 33 (64)
T 2cu3_A 1 MVWLNGEPRPL----EGKTLKEVLEEMG----VELKGVAVL 33 (64)
T ss_dssp CEEETTEEECC----TTCCHHHHHHHHT----BCGGGEEEE
T ss_pred CEEECCEEEEc----CCCcHHHHHHHcC----CCCCcEEEE
Confidence 47899998864 4579999988873 334444454
No 57
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=34.74 E-value=65 Score=18.36 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=36.8
Q ss_pred CeEeEEE--cCeeEEEeccCCcccHHHHHHHHHhhcCCC-CceEEEEeecCceeecCCCCcchhhh
Q psy8537 1 MELKVWV--EGMQKIVSGVTESTTCQDIVFALAHATGKT-GRYTLIERFRNNERLLTPQDHPIKLI 63 (102)
Q Consensus 1 MELkVWV--~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~-grY~LVEKwRg~ER~L~p~e~pl~iL 63 (102)
|.++|.| +|... .-.+...+|-+|+-..+++..|-| .+.-|+ ++| |.|.. +..+..+
T Consensus 3 M~m~i~vk~~g~~~-~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~--~~g--k~L~d-~~tL~~~ 62 (77)
T 2bwf_A 3 MSLNIHIKSGQDKW-EVNVAPESTVLQFKEAINKANGIPVANQRLI--YSG--KILKD-DQTVESY 62 (77)
T ss_dssp EEEEEEEEETTEEE-EEEECTTCBHHHHHHHHHHHHCCCGGGEEEE--ETT--EECCT-TSBTGGG
T ss_pred eEEEEEEEECCEEE-EEEECCCCcHHHHHHHHHHHhCCCHHHEEEE--ECC--eEcCC-CCCHHHc
Confidence 4455555 45543 447999999999999999888854 555554 455 45643 3444433
No 58
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=34.45 E-value=64 Score=19.26 Aligned_cols=28 Identities=18% Similarity=0.099 Sum_probs=19.9
Q ss_pred EeEEEcCee-EEEeccCCcccHHHHHHHH
Q psy8537 3 LKVWVEGMQ-KIVSGVTESTTCQDIVFAL 30 (102)
Q Consensus 3 LkVWV~G~e-R~V~GvT~~TTC~DVV~AL 30 (102)
.+|.|+|+. +...-+.+.+|.+|++..|
T Consensus 5 m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l 33 (70)
T 1ryj_A 5 MKFTVITDDGKKILESGAPRRIKDVLGEL 33 (70)
T ss_dssp EEEEEEETTEEEEEEESSCCBHHHHHHHT
T ss_pred EEEEEeCccCceeEECCCCCcHHHHHHHh
Confidence 467788876 2223456778999999887
No 59
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A
Probab=32.20 E-value=81 Score=21.12 Aligned_cols=44 Identities=11% Similarity=0.248 Sum_probs=31.1
Q ss_pred cCCcccHHHHHH-HHHhh--cC-CCCceEEEEee-cCceeecCCCCcch
Q psy8537 17 VTESTTCQDIVF-ALAHA--TG-KTGRYTLIERF-RNNERLLTPQDHPI 60 (102)
Q Consensus 17 vT~~TTC~DVV~-ALaq~--~G-~~grY~LVEKw-Rg~ER~L~p~e~pl 60 (102)
+|..---..||. ||.+- .| +|.+|.|++.. .|.|=.+|.+.+..
T Consensus 23 ltsqDrtp~vI~~al~Khnl~~~~~~~y~L~Q~Lp~~kEL~iPd~aNvf 71 (87)
T 1lfd_A 23 VTSQDKAPTVIRKAMDKHNLDEDEPEDYELLQIISEDHKLKIPENANVF 71 (87)
T ss_dssp EETTCBHHHHHHHHHHHTTCCSSCGGGEEEEEESSSSCEEECCTTSBHH
T ss_pred EecCCCcHHHHHHHHHHcCCCCCCccceEEEEEcCCCCEEecCCCccEE
Confidence 555555566665 44431 23 48999999999 89999999886654
No 60
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=31.79 E-value=88 Score=18.97 Aligned_cols=57 Identities=16% Similarity=0.241 Sum_probs=36.7
Q ss_pred CeEeEEE-cCeeEEEeccCCcccHHHHHHHHHhhcCCC-CceEEEEeecCceeecCCCCcchhhh
Q psy8537 1 MELKVWV-EGMQKIVSGVTESTTCQDIVFALAHATGKT-GRYTLIERFRNNERLLTPQDHPIKLI 63 (102)
Q Consensus 1 MELkVWV-~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~-grY~LVEKwRg~ER~L~p~e~pl~iL 63 (102)
|.+.|.- +|.. ..-.+++.+|-+|+-..+++..|-| .+.-|+ ++| |.|.. ++.+..+
T Consensus 10 ~~i~v~~~~G~~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~--~~G--k~L~D-~~tL~~~ 68 (88)
T 1sif_A 10 LQLFIKTLTGKT-FTVEMEPSDTIENLKAKIQDKEGIPPDQQRLI--FAG--KQLED-GRTLSDY 68 (88)
T ss_dssp CEEEEEETTSCE-EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE--ETT--EECCT-TSBSGGG
T ss_pred eEEEEEeCCCCE-EEEEECCCChHHHHHHHHHHHHCcChhhEEEE--ECC--EECCC-CCcHHHc
Confidence 6677664 5644 4456999999999999999988854 444444 234 45643 3444433
No 61
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=30.74 E-value=62 Score=20.17 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=24.3
Q ss_pred eEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCC-CceEEEEe
Q psy8537 4 KVWVEGMQKIVSGVTESTTCQDIVFALAHATGKT-GRYTLIER 45 (102)
Q Consensus 4 kVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~-grY~LVEK 45 (102)
+|.|+|+.+-+.. -..+|-+|++..| |-+ .+.+.|+.
T Consensus 2 ~I~vNGe~~e~~~-~~~~Tl~~LL~~l----~~~~~~~vAVav 39 (78)
T 2k5p_A 2 NLTVNGKPSTVDG-AESLNVTELLSAL----KVAQAEYVTVEL 39 (78)
T ss_dssp EEEETTEEEECSS-CSCEEHHHHHHHH----TCSCTTTCCEEE
T ss_pred EEEECCEEEEcCC-CCCCcHHHHHHHc----CCCCCCcEEEEE
Confidence 6788999887531 0458888888876 444 44445554
No 62
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=29.25 E-value=1e+02 Score=18.88 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=37.8
Q ss_pred CeEeEEE-cCeeEEEeccCCcccHHHHHHHHHhhcCCC-CceEEEEeecCceeecCCCCcchhhh
Q psy8537 1 MELKVWV-EGMQKIVSGVTESTTCQDIVFALAHATGKT-GRYTLIERFRNNERLLTPQDHPIKLI 63 (102)
Q Consensus 1 MELkVWV-~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~-grY~LVEKwRg~ER~L~p~e~pl~iL 63 (102)
|.|.|=. +|... ...++..+|-+|+-..+++..|-| .+.-|+ +.| |.|.. ++.+..+
T Consensus 1 M~I~Vk~~~g~~~-~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~--~~G--k~L~D-~~tL~~~ 59 (98)
T 1yx5_B 1 MQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAG--KQLED-GRTLSDY 59 (98)
T ss_dssp CEEEEEETTSCEE-EEECCTTCBHHHHHHHHHHHTCCCGGGEEEE--ETT--EECCT-TSBTGGG
T ss_pred CEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHCcChhhEEEE--ECC--EECCC-CCCHHHc
Confidence 7777755 56544 446999999999999999988854 445554 344 45653 3444433
No 63
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*
Probab=28.66 E-value=59 Score=22.78 Aligned_cols=32 Identities=25% Similarity=0.494 Sum_probs=26.6
Q ss_pred eEeEEEcCeeE-EEeccCCcccHHHHHHHHHhh
Q psy8537 2 ELKVWVEGMQK-IVSGVTESTTCQDIVFALAHA 33 (102)
Q Consensus 2 ELkVWV~G~eR-~V~GvT~~TTC~DVV~ALaq~ 33 (102)
||++|+.|... +--...+.+--.++-.+|++.
T Consensus 91 Elki~isg~~~pi~~~f~k~~di~~i~k~La~~ 123 (126)
T 3hsa_A 91 ELXLWISGQHEPLVXELXRGTDVVGIQXTIARY 123 (126)
T ss_dssp EEEEEETTCSSCEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCceEEEEeccCcccHHHHHHHHHHH
Confidence 89999987664 666888999999999999874
No 64
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=27.24 E-value=88 Score=17.52 Aligned_cols=56 Identities=14% Similarity=0.187 Sum_probs=36.3
Q ss_pred CeEeEEE-cCeeEEEeccCCcccHHHHHHHHHhhcCCC-CceEEEEeecCceeecCCCCcchhh
Q psy8537 1 MELKVWV-EGMQKIVSGVTESTTCQDIVFALAHATGKT-GRYTLIERFRNNERLLTPQDHPIKL 62 (102)
Q Consensus 1 MELkVWV-~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~-grY~LVEKwRg~ER~L~p~e~pl~i 62 (102)
|.|.|=- +|.... -.+...+|-+|+-..+++..|-| .+..|+ ++| +.|.+ ++.+..
T Consensus 1 M~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~--~~g--~~L~d-~~tL~~ 58 (76)
T 1ndd_A 1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEGIPPQQQRLI--YSG--KQMND-EKTAAD 58 (76)
T ss_dssp CEEEEECTTSCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGEEEE--ETT--EECCT-TSBGGG
T ss_pred CEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHHCcChHHEEEE--ECC--EECCC-CCcHHH
Confidence 6677644 565444 46999999999999999988844 455554 344 45643 344433
No 65
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=27.11 E-value=1.1e+02 Score=18.67 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=37.7
Q ss_pred CeEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCC-CceEEE-EeecCceeecCCCCcchhhh
Q psy8537 1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKT-GRYTLI-ERFRNNERLLTPQDHPIKLI 63 (102)
Q Consensus 1 MELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~-grY~LV-EKwRg~ER~L~p~e~pl~iL 63 (102)
|.|.|=-.|....+..+....|-.|+-..+++..|-| .+-.|+ -|++| +.|. ++..+..+
T Consensus 8 m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~G--k~L~-D~~~L~~~ 69 (90)
T 1v5t_A 8 LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKG--KPAE-NDVKLGAL 69 (90)
T ss_dssp CCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETT--EECC-TTSBHHHH
T ss_pred EEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCC--cCcC-CCCCHHHc
Confidence 4455544676655548999999999999999988843 343443 12455 4554 34445444
No 66
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=27.08 E-value=1e+02 Score=18.30 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=32.6
Q ss_pred cC-eeEEEeccCCcccHHHHHHHHHhhcCCC-CceEEEEeecCceeecCCCCcchhhh
Q psy8537 8 EG-MQKIVSGVTESTTCQDIVFALAHATGKT-GRYTLIERFRNNERLLTPQDHPIKLI 63 (102)
Q Consensus 8 ~G-~eR~V~GvT~~TTC~DVV~ALaq~~G~~-grY~LVEKwRg~ER~L~p~e~pl~iL 63 (102)
+| ....+..++..+|-.|+-..+++..|-| .+-.|+= .| +.|. +++.+..+
T Consensus 16 ~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~--~g--k~L~-d~~tL~~~ 68 (89)
T 1wy8_A 16 DGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFY--RG--KQLE-NGYTLFDY 68 (89)
T ss_dssp TCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE--TT--EECC-SSSBHHHH
T ss_pred CCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEE--CC--eECC-CCCCHHHC
Confidence 46 3444436999999999999999888843 5555542 33 5564 34445444
No 67
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=26.77 E-value=93 Score=21.84 Aligned_cols=45 Identities=11% Similarity=0.220 Sum_probs=30.8
Q ss_pred cCCcccHHHHHH-HHHhh--cC-CCCceEEEEee-cCceeecCCCCcchh
Q psy8537 17 VTESTTCQDIVF-ALAHA--TG-KTGRYTLIERF-RNNERLLTPQDHPIK 61 (102)
Q Consensus 17 vT~~TTC~DVV~-ALaq~--~G-~~grY~LVEKw-Rg~ER~L~p~e~pl~ 61 (102)
||..---..||. ||.+- .+ .+.+|.|++.. .|.|=.+|.+.+..=
T Consensus 48 ltsqDktp~VI~raL~Khnl~~~~~~~y~L~Q~Lp~~kEL~iPd~aNVFY 97 (115)
T 1rax_A 48 VTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILSDDRKLKIPENANVFY 97 (115)
T ss_dssp EETTCCHHHHHHHHHHHHTCTTSCSTTEEEEEECSSSCEEEECTTSCHHH
T ss_pred EecCCCcHHHHHHHHHHcCCCCCCccceEEEEEcCCCCeEecCCCcceEE
Confidence 455555556665 44431 23 57899999999 599999998866543
No 68
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=26.36 E-value=99 Score=17.83 Aligned_cols=43 Identities=23% Similarity=0.320 Sum_probs=29.8
Q ss_pred cCeeEEEeccCCcccHHHHHHHHHhhcCCC-CceEEEEeecCceeecCC
Q psy8537 8 EGMQKIVSGVTESTTCQDIVFALAHATGKT-GRYTLIERFRNNERLLTP 55 (102)
Q Consensus 8 ~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~-grY~LVEKwRg~ER~L~p 55 (102)
+|.. ..-.+++.+|-.|+-..+++..|-| .+..|+ ++| |.|..
T Consensus 12 ~g~~-~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~--~~g--~~L~d 55 (85)
T 3mtn_B 12 TGKT-ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAG--KQLED 55 (85)
T ss_dssp TSCE-EEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE--ETT--EECCT
T ss_pred CCCE-EEEEECCCCCHHHHHHHHHHHHCcChHHEEEE--ECC--EECCC
Confidence 3444 3446899999999999999988844 555555 445 55654
No 69
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=25.81 E-value=78 Score=18.36 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=27.5
Q ss_pred EeEEE---cCeeEEEeccCCcccHHHHHHHHHhhcCCC-CceEE
Q psy8537 3 LKVWV---EGMQKIVSGVTESTTCQDIVFALAHATGKT-GRYTL 42 (102)
Q Consensus 3 LkVWV---~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~-grY~L 42 (102)
+.|.| +|. .+...+.+.+|..++-.++++..|-| .+..|
T Consensus 4 m~i~vk~~~g~-~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL 46 (79)
T 2uyz_B 4 IKLKVIGQDSS-EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRF 46 (79)
T ss_dssp EEEEEECTTCC-EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEE
T ss_pred EEEEEECCCCC-EEEEEECCCChHHHHHHHHHHHHCCCcccEEE
Confidence 45555 354 44457899999999999999988854 34444
No 70
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=25.66 E-value=1e+02 Score=21.99 Aligned_cols=28 Identities=11% Similarity=0.078 Sum_probs=22.7
Q ss_pred CeEeEEEcCeeEEEeccCCcccHHHHHHH
Q psy8537 1 MELKVWVEGMQKIVSGVTESTTCQDIVFA 29 (102)
Q Consensus 1 MELkVWV~G~eR~V~GvT~~TTC~DVV~A 29 (102)
|.+++.|||++..+. +.+.+|=-|+...
T Consensus 4 ~~i~~~vNG~~~~~~-v~~~~tLLd~LR~ 31 (166)
T 1n62_A 4 AHIELTINGHPVEAL-VEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEEEETTEEEEEE-ECTTCBHHHHHHH
T ss_pred ceEEEEECCEEEEEe-cCCCCcHHHHHHH
Confidence 478999999999875 7888887776665
No 71
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=25.51 E-value=92 Score=17.92 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=30.0
Q ss_pred cCeeE-EEeccCCcccHHHHHHHHHhhcCCC-CceEEEEeecCceeecC
Q psy8537 8 EGMQK-IVSGVTESTTCQDIVFALAHATGKT-GRYTLIERFRNNERLLT 54 (102)
Q Consensus 8 ~G~eR-~V~GvT~~TTC~DVV~ALaq~~G~~-grY~LVEKwRg~ER~L~ 54 (102)
+|..- .+.+++..+|-+|+=..+++..|-| .+-.|+ +.| +.|.
T Consensus 11 ~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~--~~g--~~L~ 55 (78)
T 2faz_A 11 DGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLF--YRG--KQME 55 (78)
T ss_dssp TSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE--ETT--EECC
T ss_pred CCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEE--ECC--EECC
Confidence 47663 5556999999999999999988854 444554 344 4564
No 72
>3gne_A Val-1; alginate lyase, polysaccharide lyase family 14, chlorella VI lyase; HET: FLC; 1.20A {Chlorella virus} PDB: 3a0n_A* 3im0_A*
Probab=24.61 E-value=57 Score=25.41 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=17.6
Q ss_pred eEeEEEcCeeEEEeccCCccc
Q psy8537 2 ELKVWVEGMQKIVSGVTESTT 22 (102)
Q Consensus 2 ELkVWV~G~eR~V~GvT~~TT 22 (102)
++.|||||++....++.-+++
T Consensus 187 ~v~v~VNG~~v~~~~i~~r~~ 207 (252)
T 3gne_A 187 ESYVIVNGKKEVLKRINWSRS 207 (252)
T ss_dssp EEEEEETTEEEEEEEECCCSS
T ss_pred eEEEEECCEEEEECCEEEEec
Confidence 579999999998888877763
No 73
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=24.14 E-value=1.5e+02 Score=19.27 Aligned_cols=49 Identities=8% Similarity=0.156 Sum_probs=34.9
Q ss_pred CeEeEEEcCeeEEEeccCCcccHHHHHHHHHhhcCCCCceEEEEeecCce
Q psy8537 1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNE 50 (102)
Q Consensus 1 MELkVWV~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~grY~LVEKwRg~E 50 (102)
|-+|++-.|..+ +--+....+++++...+.+-.+-+..=.+.-||+|=|
T Consensus 7 vkvK~~~~gdi~-~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEe 55 (89)
T 1vd2_A 7 VRVKAYYRGDIM-ITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEE 55 (89)
T ss_dssp EEEEEESSSCEE-EEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSS
T ss_pred EEEEEEeCCeEE-EEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCC
Confidence 457888888766 4456778999999988887766432223466888866
No 74
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=23.78 E-value=31 Score=23.13 Aligned_cols=14 Identities=0% Similarity=0.041 Sum_probs=11.9
Q ss_pred ccHHHHHHHHHhhc
Q psy8537 21 TTCQDIVFALAHAT 34 (102)
Q Consensus 21 TTC~DVV~ALaq~~ 34 (102)
+|-.|++..|.+..
T Consensus 43 ~TV~~Ll~~L~~~~ 56 (114)
T 1wgk_A 43 WDIRNLLVWIKKNL 56 (114)
T ss_dssp CBHHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHHc
Confidence 69999999998753
No 75
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=23.26 E-value=1.2e+02 Score=17.57 Aligned_cols=42 Identities=21% Similarity=0.244 Sum_probs=28.6
Q ss_pred CeEeEEE-cCeeEEEeccCCcccHHHHHHHHHhhcCCC-CceEEE
Q psy8537 1 MELKVWV-EGMQKIVSGVTESTTCQDIVFALAHATGKT-GRYTLI 43 (102)
Q Consensus 1 MELkVWV-~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~-grY~LV 43 (102)
|.|.|=- +|... .-.+++.+|-.|+-..+++..|-| .+..|+
T Consensus 4 m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~ 47 (85)
T 3n3k_B 4 MRIVVKTLMGRTI-ILEVEPSDTIENVKAKIQDKEGIPPDQQRLI 47 (85)
T ss_dssp CEEEEECGGGCEE-EEECCTTCBHHHHHHHHHHHHCCCGGGEEEE
T ss_pred EEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHCCCHHHEEEE
Confidence 4455542 44443 446899999999999999988854 444444
No 76
>1rlf_A RLF, RLF-RBD; signal transduction protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=23.09 E-value=87 Score=21.11 Aligned_cols=37 Identities=11% Similarity=0.164 Sum_probs=26.6
Q ss_pred HHHHHHhh--cC-CCCceEEEEeec-CceeecCCCCcchhh
Q psy8537 26 IVFALAHA--TG-KTGRYTLIERFR-NNERLLTPQDHPIKL 62 (102)
Q Consensus 26 VV~ALaq~--~G-~~grY~LVEKwR-g~ER~L~p~e~pl~i 62 (102)
|..||.+- .+ .+.+|.|++..- |.|=.+|.+.+..=.
T Consensus 36 I~~al~Khnl~~~~~~~y~L~Q~Lp~~kEL~iPd~aNvFYA 76 (90)
T 1rlf_A 36 ISRVLKKNNRDSAVASEFELVQLLPGDRELTIPHSANVFYA 76 (90)
T ss_dssp HHHHHHHTTTTSCCCCCEEEEETTTTCEECCTTSCSTTHHH
T ss_pred HHHHHHHcCCCCCChhheEEEEEcCCCCEEecCCCccEEEE
Confidence 33455441 23 789999999997 999999988666543
No 77
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=22.84 E-value=1.1e+02 Score=17.30 Aligned_cols=20 Identities=10% Similarity=0.116 Sum_probs=15.0
Q ss_pred EEeccCCcccHHHHHHHHHh
Q psy8537 13 IVSGVTESTTCQDIVFALAH 32 (102)
Q Consensus 13 ~V~GvT~~TTC~DVV~ALaq 32 (102)
.|.|+...+|-+|+-..+.+
T Consensus 5 ~V~nlp~~~t~~~l~~~f~~ 24 (83)
T 3md1_A 5 FVGDLNVNVDDETLRNAFKD 24 (83)
T ss_dssp EEECCCTTCCHHHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHHh
Confidence 35689999998888776543
No 78
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=22.59 E-value=71 Score=22.63 Aligned_cols=29 Identities=28% Similarity=0.267 Sum_probs=23.0
Q ss_pred CeEeEEEcCeeEEEeccCCcc---cHHHHHHHH
Q psy8537 1 MELKVWVEGMQKIVSGVTEST---TCQDIVFAL 30 (102)
Q Consensus 1 MELkVWV~G~eR~V~GvT~~T---TC~DVV~AL 30 (102)
|.|++-++| ..+..-+...- ||+++..+|
T Consensus 30 ~~I~i~~~~-~~~~a~L~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 30 MRLRIRFES-AECEVELYEEWAPETVRAIADAL 61 (153)
T ss_dssp CCEEEEETT-EEEEECCCTTSCHHHHHHHHHTC
T ss_pred eEEEEEECC-EEEEEEEcCCCCHHHHHHHHHhC
Confidence 678888888 44777788888 999998875
No 79
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=21.29 E-value=1.7e+02 Score=18.64 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=37.1
Q ss_pred CeEeEEE-cCeeEEEeccCCcccHHHHHHHHHhhcCCC-CceEEEEeecCceeecCCCCcchhh
Q psy8537 1 MELKVWV-EGMQKIVSGVTESTTCQDIVFALAHATGKT-GRYTLIERFRNNERLLTPQDHPIKL 62 (102)
Q Consensus 1 MELkVWV-~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~-grY~LVEKwRg~ER~L~p~e~pl~i 62 (102)
|.|.|=. +|... ...++..+|-+|+-..+++..|-| .+..|+= .| |.|.. ++.+..
T Consensus 1 M~i~vk~~~g~~~-~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~--~g--~~L~d-~~tL~~ 58 (152)
T 3b08_A 1 MQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AG--KQLED-GRTLSD 58 (152)
T ss_dssp CEEEEEETTSCEE-EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE--TT--EECCT-TSBTGG
T ss_pred CEEEEEeCCCCEE-EEEECCCCCHHHHHHHHHHHHCcChHHeEEEE--CC--eECcC-cccHHH
Confidence 7777754 56544 347999999999999999988854 5555552 34 45643 344443
No 80
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.78 E-value=1.3e+02 Score=17.18 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=28.0
Q ss_pred CeEeEEE-cCeeEEEeccCCcccHHHHHHHHHhhcCCC-CceEEE
Q psy8537 1 MELKVWV-EGMQKIVSGVTESTTCQDIVFALAHATGKT-GRYTLI 43 (102)
Q Consensus 1 MELkVWV-~G~eR~V~GvT~~TTC~DVV~ALaq~~G~~-grY~LV 43 (102)
|.|.|=. +|... .-.+...+|-+|+-..+++..|-| .+.-|+
T Consensus 8 m~i~vk~~~g~~~-~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~ 51 (81)
T 2dzi_A 8 MQLTVKALQGREC-SLQVPEDELVSTLKQLVSEKLNVPVRQQRLL 51 (81)
T ss_dssp EEEEEEETTSCEE-EEEECSSCBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred EEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHCcCHHHEEEE
Confidence 3444432 46433 346899999999999999988843 444454
No 81
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.45 E-value=1.4e+02 Score=17.57 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=16.0
Q ss_pred EEeccCCcccHHHHHHHHHh
Q psy8537 13 IVSGVTESTTCQDIVFALAH 32 (102)
Q Consensus 13 ~V~GvT~~TTC~DVV~ALaq 32 (102)
.|.+|...+|-+||...+.+
T Consensus 16 ~v~nLp~~~t~~~l~~~f~~ 35 (102)
T 1x5s_A 16 FVGGLSFDTNEQSLEQVFSK 35 (102)
T ss_dssp EEESCCTTCCHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHh
Confidence 46789999999998777654
No 82
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=20.09 E-value=63 Score=20.53 Aligned_cols=51 Identities=24% Similarity=0.379 Sum_probs=31.6
Q ss_pred CeEeEEEc-CeeEEEeccCCcccHHHHHHHHHhhcCCC-CceEEEEeecCceeecCC
Q psy8537 1 MELKVWVE-GMQKIVSGVTESTTCQDIVFALAHATGKT-GRYTLIERFRNNERLLTP 55 (102)
Q Consensus 1 MELkVWV~-G~eR~V~GvT~~TTC~DVV~ALaq~~G~~-grY~LVEKwRg~ER~L~p 55 (102)
|.++|.|. +-....-.++..+|-.|+=..+++..|-| .+-.|+ ++| |.|..
T Consensus 27 m~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi--~~G--k~L~D 79 (101)
T 3m63_B 27 MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLI--YSG--KILKD 79 (101)
T ss_dssp --CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEE--ETT--EECCT
T ss_pred cEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEE--ECC--EECCC
Confidence 55666664 33334446899999999999998888743 333443 244 45543
Done!