RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8537
(102 letters)
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: d.15.1.5
Length = 95
Score = 96.1 bits (239), Expect = 7e-28
Identities = 40/72 (55%), Positives = 55/72 (76%)
Query: 1 MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
MELKVWV+G+Q+IV GVTE TTCQ++V ALA A G+TGRYTLIE++R+ ER L P ++PI
Sbjct: 8 MELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHLAPHENPI 67
Query: 61 KLIKFSHKFTDN 72
+ ++ +
Sbjct: 68 ISLNKWGQYASD 79
>2uwq_A Apoptosis-stimulating of P53 protein 2; ASPP2, ubiquitin-like,
SH3-domain, cell cycle, ANK repeat, SH3-binding; NMR
{Homo sapiens}
Length = 86
Score = 63.9 bits (155), Expect = 3e-15
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 1 MELKVWVEGMQKIVSGV--TESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDH 58
M L V++ ++ + V T T C+D+V L G++ + L E + +ER + +
Sbjct: 7 MFLTVYLSNNEQHFTEVPVTPETICRDVV-DLCKEPGESDCH-LAEVWCGSERPVADNER 64
Query: 59 PIKLIK 64
+++
Sbjct: 65 MFDVLQ 70
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.038
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 10 MQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNN 49
++ + G T Q +V A+A A + E F +
Sbjct: 263 LRSYLKGAT--GHSQGLVTAVAIAETDSW-----ESFFVS 295
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.9 bits (64), Expect = 0.23
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 24/61 (39%)
Query: 49 NERLLTP--QDHPIKLIKFSHKFTDNTSG-----------GEKSVKTIFISPGWEWKNYA 95
N L P + +P K++ + G +K + EW+ ++
Sbjct: 19 NIVLTCPECKVYPPKIV------ERFSEGDVVCALCGLVLSDK-----LVDTRSEWRTFS 67
Query: 96 H 96
+
Sbjct: 68 N 68
>2zzd_B Thiocyanate hydrolase subunit beta; scnase, cobalt, metalloprotein,
sulfenic acid, sulfinic acid, nitrIle hydratase,
carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus
thioparus} PDB: 2dd4_B 2dxb_B 2dd5_B* 2dxc_B*
Length = 157
Score = 27.7 bits (61), Expect = 0.53
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 27 VFALAHATGKTGRYTLIERFRNNERLLTPQDH 58
FA G +T ER R + +
Sbjct: 72 TFATCECLAWRGVWTAEERRRKQNCDVGQTVY 103
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd reductase,
NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2
PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A*
2vuu_A*
Length = 352
Score = 27.5 bits (61), Expect = 0.66
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 12 KIVSGVTESTTCQDIVFALAHATGKTGRY 40
++ E+ + + A + A + Y
Sbjct: 214 HRIALTFETLSPVQVCAAFSRALNRRVTY 242
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula
dsm 2008} PDB: 3r14_A*
Length = 221
Score = 27.3 bits (60), Expect = 0.80
Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 7/35 (20%)
Query: 29 ALAHATGKTGRYTLIERFRNNERLLTPQDHPIKLI 63
+ A G+ + LLT D I L
Sbjct: 9 TILGAAGQIAQXLT-------ATLLTYTDMHITLY 36
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH,
RAS-associating, pleckstrin-homology, adapter
phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Length = 256
Score = 26.3 bits (57), Expect = 2.2
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 1 MELKVWVEGMQKIVSGVTESTTCQDIVFALA--HATGKTGRYTLIERFRNNERLLTPQDH 58
++KV+ E V + T +D+ L + +TL+E + +DH
Sbjct: 9 QDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDH 68
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 26.2 bits (58), Expect = 2.2
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 12 KIVSGVTESTTCQDIVFALAHATGKTGRY 40
+ + T T ++ L T K
Sbjct: 211 QNIGLSTCRHTAEEYAALLTKHTRKVVHD 239
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD
motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15
PDB: 1omx_A* 1on6_A* 1on8_A*
Length = 293
Score = 26.2 bits (57), Expect = 2.3
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 3 LKVWVEGMQKIVSGVTESTTCQDIV--FALAHATGK 36
L+++ + + + + E+ C DI F + TGK
Sbjct: 187 LELFQKQPAAVHALIDETQNCDDIAMNFLVTRHTGK 222
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 2.8
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 43 IERFRNNERLLTPQDHPIKLIK 64
+++ + + +L P IK
Sbjct: 22 LKKLQASLKLYADDSAPALAIK 43
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 25.5 bits (56), Expect = 3.6
Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 7/35 (20%)
Query: 29 ALAHATGKTGRYTLIERFRNNERLLTPQDHPIKLI 63
+ A G+ R+ + +L Q L
Sbjct: 27 LILGAGGQIARHVI-------NQLADKQTIKQTLF 54
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity,
glycolysis, , isothermal titration calorimetry, lyase;
1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A
1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Length = 439
Score = 25.6 bits (57), Expect = 4.0
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 15 SGVTESTTCQDIVFALAHATG--KTG 38
SG TE T D+V L TG KTG
Sbjct: 372 SGETEDTFIADLVVGL--CTGQIKTG 395
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A
{Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB:
1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A
4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A*
2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Length = 436
Score = 25.6 bits (57), Expect = 4.0
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 15 SGVTESTTCQDIVFALAHATG--KTG 38
SG TE T D+V L TG KTG
Sbjct: 375 SGETEDTFIADLVVGL--RTGQIKTG 398
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba
histolytica}
Length = 441
Score = 25.2 bits (56), Expect = 4.2
Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 15 SGVTESTTCQDIVFALAHATG--KTG 38
SG TE T D+V L KTG
Sbjct: 382 SGETEDTFIADLVVGL--NCKQIKTG 405
>2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei}
SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A
2pu0_A 2pu1_A* 1oep_A
Length = 432
Score = 25.2 bits (56), Expect = 4.5
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 15 SGVTESTTCQDIVFALAHATG--KTG 38
SG TE T D+V AL +G KTG
Sbjct: 376 SGETEDTYIADLVVAL--GSGQIKTG 399
>3otr_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, alpha-beta barrel, TIM barrel;
2.75A {Toxoplasma gondii}
Length = 452
Score = 25.2 bits (56), Expect = 4.6
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 15 SGVTESTTCQDIVFALAHATG--KTG 38
SG TE + D+V L G K+G
Sbjct: 385 SGETEDSFIADLVVGL--RCGQIKSG 408
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 24.7 bits (53), Expect = 6.5
Identities = 10/52 (19%), Positives = 18/52 (34%)
Query: 37 TGRYTLIERFRNNERLLTPQDHPIKLIKFSHKFTDNTSGGEKSVKTIFISPG 88
G+ TL++ N + P H ++ D + TI + G
Sbjct: 53 LGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVG 104
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 24.8 bits (54), Expect = 7.4
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 46 FRNNERLLTPQDHP 59
F N + L PQ HP
Sbjct: 256 FWNFDALFQPQQHP 269
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA;
structural genomics; 2.60A {Methylobacillus flagellatus}
Length = 348
Score = 24.5 bits (53), Expect = 7.9
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 25 DIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPIKLIK 64
D+ + +A+ T + +N L+ P++ K IK
Sbjct: 76 DLPPIILNASKPTVQLVAPWGTTSNSYLVVPKNSTAKSIK 115
>2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural
GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii}
Length = 427
Score = 24.4 bits (54), Expect = 8.1
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 15 SGVTESTTCQDIVFALAHATG--KTG 38
SG TE TT D+ AL +G KTG
Sbjct: 369 SGETEDTTIADLSVAL--NSGQIKTG 392
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.406
Gapped
Lambda K H
0.267 0.0596 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,568,645
Number of extensions: 77935
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 23
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)