RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8537
         (102 letters)



>d2cs4a1 d.15.1.5 (A:8-91) Ras association domain-containing
          protein 8 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 84

 Score =  101 bits (253), Expect = 2e-30
 Identities = 40/64 (62%), Positives = 52/64 (81%)

Query: 1  MELKVWVEGMQKIVSGVTESTTCQDIVFALAHATGKTGRYTLIERFRNNERLLTPQDHPI 60
          MELKVWV+G+Q+IV GVTE TTCQ++V ALA A G+TGRYTLIE++R+ ER L P ++PI
Sbjct: 1  MELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHLAPHENPI 60

Query: 61 KLIK 64
            + 
Sbjct: 61 ISLN 64


>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7,
          GRB-7 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 100

 Score = 30.2 bits (68), Expect = 0.016
 Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 4/66 (6%)

Query: 3  LKVWVEGMQKIVSGVTESTTCQDIVFALAHATG--KTGRYTLIERFRNNE--RLLTPQDH 58
          +KV+ E        V    T + +   L           + L+E   +    R L   + 
Sbjct: 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHES 71

Query: 59 PIKLIK 64
           +++  
Sbjct: 72 VVEVQA 77


>d1wxaa1 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 103

 Score = 24.5 bits (53), Expect = 2.2
 Identities = 8/79 (10%), Positives = 24/79 (30%), Gaps = 19/79 (24%)

Query: 3  LKVWVEGMQKIVS----GVTESTTCQDIVFALAHATGKTGR----YTLIERFRNN----- 49
          L+++ + ++  +      ++ + T    V       G        Y +            
Sbjct: 5  LRIYADSLKPNIPYKTILLSTTDTADFAVAESLEKYGLEKENPKDYCIARVMLPPGAQHS 64

Query: 50 ------ERLLTPQDHPIKL 62
                E +L   + P+++
Sbjct: 65 DERGAKEIILDDDECPLQI 83


>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter
          vinelandii [TaxId: 354]}
          Length = 289

 Score = 24.1 bits (51), Expect = 4.7
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 4/33 (12%)

Query: 10 MQKIV----SGVTESTTCQDIVFALAHATGKTG 38
          M++       G+ +STT Q++V ALA    K  
Sbjct: 2  MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVM 34


>d1h05a_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 144

 Score = 22.9 bits (49), Expect = 9.7
 Identities = 7/45 (15%), Positives = 15/45 (33%)

Query: 57  DHPIKLIKFSHKFTDNTSGGEKSVKTIFISPGWEWKNYAHVSFIS 101
            +   L   S    D  +     +  + IS     + +   S++S
Sbjct: 72  LNAGGLTHTSVALRDACAELSAPLIEVHISNVHAREEFRRHSYLS 116


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.406 

Gapped
Lambda     K      H
   0.267   0.0697    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 391,066
Number of extensions: 15555
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 7
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (21.9 bits)