BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8538
(64 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q04649|CDX2_MESAU Homeobox protein CDX-2 OS=Mesocricetus auratus GN=CDX2 PE=2 SV=1
Length = 313
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/28 (89%), Positives = 27/28 (96%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHYSRYITIRRKAELA +LGLSERQV+
Sbjct: 203 EFHYSRYITIRRKAELAATLGLSERQVK 230
>sp|Q99626|CDX2_HUMAN Homeobox protein CDX-2 OS=Homo sapiens GN=CDX2 PE=1 SV=3
Length = 313
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/28 (89%), Positives = 27/28 (96%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHYSRYITIRRKAELA +LGLSERQV+
Sbjct: 204 EFHYSRYITIRRKAELAATLGLSERQVK 231
>sp|Q91622|CDX1_XENLA Homeobox protein CDX-1 OS=Xenopus laevis GN=cdx1 PE=2 SV=1
Length = 263
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/28 (85%), Positives = 27/28 (96%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHYSRYITIRRKAELA +LGL+ERQV+
Sbjct: 168 EFHYSRYITIRRKAELAAALGLTERQVK 195
>sp|P46692|HMD1_CHICK Homeobox protein CHOX-CAD OS=Gallus gallus GN=CHOX-CAD1 PE=2 SV=1
Length = 248
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/28 (85%), Positives = 27/28 (96%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHYSRYITIRRKAELA +LGL+ERQV+
Sbjct: 155 EFHYSRYITIRRKAELAAALGLTERQVK 182
>sp|Q9DEB6|CDX1_CHICK Homeobox protein CDX-1 OS=Gallus gallus GN=CDX1 PE=2 SV=2
Length = 260
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/28 (85%), Positives = 27/28 (96%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHYSRYITIRRKAELA +LGL+ERQV+
Sbjct: 167 EFHYSRYITIRRKAELAAALGLTERQVK 194
>sp|A2T7H5|CDX1_PONPY Homeobox protein CDX-1 OS=Pongo pygmaeus GN=CDX1 PE=3 SV=1
Length = 265
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 27/28 (96%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHYSRYITIRRK+ELA +LGL+ERQV+
Sbjct: 172 EFHYSRYITIRRKSELAANLGLTERQVK 199
>sp|P18111|CDX1_MOUSE Homeobox protein CDX-1 OS=Mus musculus GN=Cdx1 PE=2 SV=2
Length = 268
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 27/28 (96%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHYSRYITIRRK+ELA +LGL+ERQV+
Sbjct: 172 EFHYSRYITIRRKSELAANLGLTERQVK 199
>sp|P47902|CDX1_HUMAN Homeobox protein CDX-1 OS=Homo sapiens GN=CDX1 PE=2 SV=2
Length = 265
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 27/28 (96%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHYSRYITIRRK+ELA +LGL+ERQV+
Sbjct: 172 EFHYSRYITIRRKSELAANLGLTERQVK 199
>sp|P43241|CDX2_MOUSE Homeobox protein CDX-2 OS=Mus musculus GN=Cdx2 PE=1 SV=1
Length = 311
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 27/28 (96%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH+SRYITIRRK+ELA +LGLSERQV+
Sbjct: 203 EFHFSRYITIRRKSELAATLGLSERQVK 230
>sp|Q05095|CDX1_RAT Homeobox protein CDX-1 (Fragment) OS=Rattus norvegicus GN=Cdx1
PE=2 SV=1
Length = 123
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/28 (82%), Positives = 27/28 (96%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHYSRYITIRRK+ELA +LGL+ERQV+
Sbjct: 23 EFHYSRYITIRRKSELAANLGLTERQVK 50
>sp|Q90X89|CDX1_XENTR Homeobox protein CDX-1 OS=Xenopus tropicalis GN=cdx1 PE=2 SV=1
Length = 262
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/28 (85%), Positives = 26/28 (92%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHYSRYITIRRKAELA SL L+ERQV+
Sbjct: 167 EFHYSRYITIRRKAELAASLALTERQVK 194
>sp|P81193|CDX_LINSA Homeobox protein CDX (Fragment) OS=Lineus sanguineus GN=CDX PE=3
SV=1
Length = 70
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 25/29 (86%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVRC 33
EFHYSRYIT+ RKAELA SL L+ERQ++
Sbjct: 19 EFHYSRYITMNRKAELAKSLDLTERQIKI 47
>sp|Q07424|CDX4_MOUSE Homeobox protein CDX-4 OS=Mus musculus GN=Cdx4 PE=2 SV=1
Length = 282
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/28 (78%), Positives = 26/28 (92%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH +RYITIRRK+ELA +LGLSERQV+
Sbjct: 189 EFHCNRYITIRRKSELAVNLGLSERQVK 216
>sp|O14627|CDX4_HUMAN Homeobox protein CDX-4 OS=Homo sapiens GN=CDX4 PE=2 SV=1
Length = 284
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/28 (75%), Positives = 26/28 (92%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH +RYITI+RK+ELA +LGLSERQV+
Sbjct: 191 EFHCNRYITIQRKSELAVNLGLSERQVK 218
>sp|Q02814|HMD2_CHICK Homeobox protein CHOX-CAD2 (Fragment) OS=Gallus gallus
GN=CHOX-CAD2 PE=2 SV=1
Length = 60
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 26/28 (92%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH +RYITIRRK+ELA +LGLSERQV+
Sbjct: 19 EFHCNRYITIRRKSELAVNLGLSERQVK 46
>sp|P10178|HMB3_TRIGR Homeobox protein HB3 (Fragment) OS=Tripneustes gratilla PE=3 SV=1
Length = 108
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH+SRY+T RR+ E+A SLGLSERQ++
Sbjct: 45 EFHFSRYVTRRRRFEIAQSLGLSERQIK 72
>sp|Q1KKS8|HXD4A_TAKRU Homeobox protein Hox-D4a OS=Takifugu rubripes GN=hoxd4a PE=3 SV=1
Length = 233
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 10/64 (15%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR----------CPHHQLTTVNNNTAIIVSFLEK 54
EFH++RY+T RR+ E+A++L LSERQ++ H+L +A S L+
Sbjct: 163 EFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWTKDHKLPNTKGRSAPASSHLQS 222
Query: 55 VHGD 58
+H D
Sbjct: 223 IHKD 226
>sp|P14840|HXB4_CHICK Homeobox protein Hox-B4 OS=Gallus gallus GN=HOXB4 PE=2 SV=1
Length = 245
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHY+RY+T RR+ E+A+SL LSERQ++
Sbjct: 168 EFHYNRYLTRRRRVEIAHSLCLSERQIK 195
>sp|Q9PWM5|HXC6B_DANRE Homeobox protein Hox-C6b OS=Danio rerio GN=hoxc6b PE=2 SV=1
Length = 227
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHY+RY+T RR+ E+AN+L LSERQ++
Sbjct: 153 EFHYNRYLTRRRRIEIANTLCLSERQIK 180
>sp|P06798|HXA4_MOUSE Homeobox protein Hox-A4 OS=Mus musculus GN=Hoxa4 PE=2 SV=4
Length = 285
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH++RY+T RR+ E+A++L LSERQV+
Sbjct: 198 EFHFNRYLTRRRRIEIAHTLCLSERQVK 225
>sp|P09023|HXB6_MOUSE Homeobox protein Hox-B6 OS=Mus musculus GN=Hoxb6 PE=2 SV=2
Length = 224
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHY+RY+T RR+ E+A++L L+ERQ++
Sbjct: 164 EFHYNRYLTRRRRIEIAHALCLTERQIK 191
>sp|P09024|HXB7_MOUSE Homeobox protein Hox-B7 OS=Mus musculus GN=Hoxb7 PE=2 SV=2
Length = 217
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHY+RY+T RR+ E+A++L L+ERQ++
Sbjct: 155 EFHYNRYLTRRRRIEIAHTLCLTERQIK 182
>sp|P22574|HXB4A_DANRE Homeobox protein Hox-B4a OS=Danio rerio GN=hoxb4a PE=2 SV=3
Length = 246
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHY+RY+T RR+ E+A++L LSERQ++
Sbjct: 169 EFHYNRYLTRRRRVEIAHTLCLSERQIK 196
>sp|Q08624|HXC4_MOUSE Homeobox protein Hox-C4 OS=Mus musculus GN=Hoxc4 PE=2 SV=1
Length = 264
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHY+RY+T RR+ E+A+SL LSERQ++
Sbjct: 174 EFHYNRYLTRRRRIEIAHSLCLSERQIK 201
>sp|P10284|HXB4_MOUSE Homeobox protein Hox-B4 OS=Mus musculus GN=Hoxb4 PE=2 SV=1
Length = 250
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHY+RY+T RR+ E+A++L LSERQ++
Sbjct: 179 EFHYNRYLTRRRRVEIAHALCLSERQIK 206
>sp|Q08DG5|HXB4_BOVIN Homeobox protein Hox-B4 OS=Bos taurus GN=HOXB4 PE=2 SV=1
Length = 251
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHY+RY+T RR+ E+A++L LSERQ++
Sbjct: 180 EFHYNRYLTRRRRVEIAHALCLSERQIK 207
>sp|P09017|HXC4_HUMAN Homeobox protein Hox-C4 OS=Homo sapiens GN=HOXC4 PE=2 SV=2
Length = 264
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHY+RY+T RR+ E+A+SL LSERQ++
Sbjct: 174 EFHYNRYLTRRRRIEIAHSLCLSERQIK 201
>sp|A2D5I1|HXD4_LAGLA Homeobox protein Hox-D4 OS=Lagothrix lagotricha GN=HOXD4 PE=3 SV=1
Length = 255
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH++RY+T RR+ E+A++L LSERQ++
Sbjct: 172 EFHFNRYLTRRRRIEIAHTLCLSERQIK 199
>sp|A2D4P8|HXD4_ATEGE Homeobox protein Hox-D4 OS=Ateles geoffroyi GN=HOXD4 PE=3 SV=1
Length = 255
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH++RY+T RR+ E+A++L LSERQ++
Sbjct: 172 EFHFNRYLTRRRRIEIAHTLCLSERQIK 199
>sp|Q00056|HXA4_HUMAN Homeobox protein Hox-A4 OS=Homo sapiens GN=HOXA4 PE=1 SV=3
Length = 320
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH++RY+T RR+ E+A++L LSERQV+
Sbjct: 233 EFHFNRYLTRRRRIEIAHTLCLSERQVK 260
>sp|P18864|HXB7_RAT Homeobox protein Hox-B7 OS=Rattus norvegicus GN=Hoxb7 PE=2 SV=2
Length = 219
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHY+RY+T RR+ E+A++L L+ERQ++
Sbjct: 155 EFHYNRYLTRRRRIEIAHALCLTERQIK 182
>sp|O13074|HXB4A_TAKRU Homeobox protein Hox-B4a OS=Takifugu rubripes GN=hoxb4a PE=3 SV=2
Length = 288
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHY+RY+T RR+ E+A++L LSERQ++
Sbjct: 178 EFHYNRYLTRRRRVEIAHTLCLSERQIK 205
>sp|A2T6X6|HXD4_PANTR Homeobox protein Hox-D4 OS=Pan troglodytes GN=HOXD4 PE=3 SV=1
Length = 255
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH++RY+T RR+ E+A++L LSERQ++
Sbjct: 172 EFHFNRYLTRRRRIEIAHTLCLSERQIK 199
>sp|A1YFY3|HXD4_PANPA Homeobox protein Hox-D4 OS=Pan paniscus GN=HOXD4 PE=3 SV=1
Length = 255
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH++RY+T RR+ E+A++L LSERQ++
Sbjct: 172 EFHFNRYLTRRRRIEIAHTLCLSERQIK 199
>sp|P17509|HXB6_HUMAN Homeobox protein Hox-B6 OS=Homo sapiens GN=HOXB6 PE=1 SV=4
Length = 224
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHY+RY+T RR+ E+A++L L+ERQ++
Sbjct: 164 EFHYNRYLTRRRRIEIAHALCLTERQIK 191
>sp|A1YER7|HXD4_GORGO Homeobox protein Hox-D4 OS=Gorilla gorilla gorilla GN=HOXD4 PE=3
SV=1
Length = 255
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH++RY+T RR+ E+A++L LSERQ++
Sbjct: 172 EFHFNRYLTRRRRIEIAHTLCLSERQIK 199
>sp|P10628|HXD4_MOUSE Homeobox protein Hox-D4 OS=Mus musculus GN=Hoxd4 PE=2 SV=3
Length = 250
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH++RY+T RR+ E+A++L LSERQ++
Sbjct: 170 EFHFNRYLTRRRRIEIAHTLCLSERQIK 197
>sp|P09016|HXD4_HUMAN Homeobox protein Hox-D4 OS=Homo sapiens GN=HOXD4 PE=2 SV=3
Length = 255
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH++RY+T RR+ E+A++L LSERQ++
Sbjct: 172 EFHFNRYLTRRRRIEIAHTLCLSERQIK 199
>sp|P31267|HXA6_HUMAN Homeobox protein Hox-A6 OS=Homo sapiens GN=HOXA6 PE=2 SV=2
Length = 233
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH++RY+T RR+ E+AN+L L+ERQ++
Sbjct: 173 EFHFNRYLTRRRRIEIANALCLTERQIK 200
>sp|P17277|HXA4_CHICK Homeobox protein Hox-A4 OS=Gallus gallus GN=HOXA4 PE=2 SV=1
Length = 309
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH++RY+T RR+ E+A++L LSERQV+
Sbjct: 227 EFHFNRYLTRRRRIEIAHTLCLSERQVK 254
>sp|P09092|HXA6_MOUSE Homeobox protein Hox-A6 OS=Mus musculus GN=Hoxa6 PE=2 SV=2
Length = 232
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH++RY+T RR+ E+AN+L L+ERQ++
Sbjct: 172 EFHFNRYLTRRRRIEIANALCLTERQIK 199
>sp|P18865|HXC4_RAT Homeobox protein Hox-C4 (Fragment) OS=Rattus norvegicus GN=Hoxc4
PE=2 SV=1
Length = 76
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHY+RY+T RR+ E+A+SL LSERQ++
Sbjct: 29 EFHYNRYLTRRRRIEIAHSLCLSERQIK 56
>sp|Q1KKR6|HXD4B_TAKRU Homeobox protein Hox-D4b OS=Takifugu rubripes GN=hoxd4b PE=3 SV=1
Length = 249
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH+SRY+T RR+ E+A++L LSERQV+
Sbjct: 174 EFHFSRYLTRRRRVEVAHTLCLSERQVK 201
>sp|Q9PWM3|HXC4A_DANRE Homeobox protein Hox-C4a OS=Danio rerio GN=hoxc4a PE=2 SV=1
Length = 268
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHY+RY+T RR+ E+A+SL LSERQ++
Sbjct: 172 EFHYNRYLTRRRRIEIAHSLVLSERQIK 199
>sp|P17483|HXB4_HUMAN Homeobox protein Hox-B4 OS=Homo sapiens GN=HOXB4 PE=1 SV=2
Length = 251
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHY+RY+T RR+ E+A++L LSERQ++
Sbjct: 180 EFHYNRYLTRRRRVEIAHALCLSERQIK 207
>sp|Q9TT89|HXB7_BOVIN Homeobox protein Hox-B7 OS=Bos taurus GN=HOXB7 PE=2 SV=1
Length = 217
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHY+RY+T RR+ E+A++L L+ERQ++
Sbjct: 155 EFHYNRYLTRRRRIEIAHALCLTERQIK 182
>sp|P09629|HXB7_HUMAN Homeobox protein Hox-B7 OS=Homo sapiens GN=HOXB7 PE=1 SV=4
Length = 217
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHY+RY+T RR+ E+A++L L+ERQ++
Sbjct: 155 EFHYNRYLTRRRRIEIAHTLCLTERQIK 182
>sp|A1YFD8|HXD4_SAGLB Homeobox protein Hox-D4 OS=Saguinus labiatus GN=HOXD4 PE=3 SV=1
Length = 255
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH++RY+T RR+ E+A++L LSERQ++
Sbjct: 172 EFHFNRYLTRRRRIEIAHTLCLSERQIK 199
>sp|Q9PWD2|HXA4_MORSA Homeobox protein Hox-A4 OS=Morone saxatilis GN=hoxa4 PE=3 SV=1
Length = 248
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH++RY+T RR+ E+A+++ LSERQV+
Sbjct: 167 EFHFNRYLTRRRRVEIAHTMCLSERQVK 194
>sp|P09070|HXB4_XENLA Homeobox protein Hox-B4 OS=Xenopus laevis GN=hoxb4 PE=2 SV=1
Length = 232
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFHY+RY+T RR+ E+A++L LSERQ++
Sbjct: 159 EFHYNRYLTRRRRVEIAHTLRLSERQIK 186
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,255,758
Number of Sequences: 539616
Number of extensions: 562111
Number of successful extensions: 2137
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1770
Number of HSP's gapped (non-prelim): 368
length of query: 64
length of database: 191,569,459
effective HSP length: 36
effective length of query: 28
effective length of database: 172,143,283
effective search space: 4820011924
effective search space used: 4820011924
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)