Query psy8538
Match_columns 64
No_of_seqs 123 out of 1048
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 21:27:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x2m_A LAG1 longevity assuranc 99.8 6.8E-21 2.3E-25 101.6 -0.9 45 1-45 14-59 (64)
2 2ecb_A Zinc fingers and homeob 99.7 1.3E-20 4.3E-25 106.0 -3.5 45 2-46 26-70 (89)
3 2cue_A Paired box protein PAX6 99.7 2.5E-19 8.6E-24 98.3 0.8 49 1-49 21-69 (80)
4 2dms_A Homeobox protein OTX2; 99.7 8.4E-20 2.9E-24 100.1 -1.6 45 1-45 21-65 (80)
5 3a03_A T-cell leukemia homeobo 99.7 8.7E-20 3E-24 94.3 -1.7 44 2-45 12-55 (56)
6 2e19_A Transcription factor 8; 99.7 2E-19 6.9E-24 95.5 -0.4 45 1-45 17-61 (64)
7 2cqx_A LAG1 longevity assuranc 99.7 1.4E-19 4.9E-24 98.0 -1.4 45 1-45 22-67 (72)
8 2l9r_A Homeobox protein NKX-3. 99.7 2E-19 6.8E-24 97.0 -1.1 44 2-45 19-62 (69)
9 2dmq_A LIM/homeobox protein LH 99.7 1.9E-19 6.3E-24 98.5 -1.3 44 2-45 22-65 (80)
10 2vi6_A Homeobox protein nanog; 99.7 3.9E-19 1.3E-23 93.3 -0.4 44 2-45 18-61 (62)
11 3a02_A Homeobox protein arista 99.7 2.1E-19 7.2E-24 93.8 -1.5 45 2-46 14-58 (60)
12 2dmp_A Zinc fingers and homeob 99.7 6.6E-20 2.2E-24 102.6 -3.7 45 2-46 28-72 (89)
13 2cra_A Homeobox protein HOX-B1 99.7 3.8E-19 1.3E-23 95.4 -0.8 44 2-45 22-65 (70)
14 1ig7_A Homeotic protein MSX-1; 99.7 2.2E-19 7.6E-24 93.0 -1.8 43 2-44 15-57 (58)
15 2hdd_A Protein (engrailed home 99.7 2.7E-19 9.1E-24 93.7 -1.7 43 2-44 18-60 (61)
16 3nau_A Zinc fingers and homeob 99.7 3.1E-19 1.1E-23 95.6 -1.9 45 1-45 18-62 (66)
17 2h1k_A IPF-1, pancreatic and d 99.7 4.1E-19 1.4E-23 93.6 -1.7 44 2-45 18-61 (63)
18 2djn_A Homeobox protein DLX-5; 99.7 7.8E-19 2.7E-23 94.1 -0.6 45 1-45 21-65 (70)
19 3rkq_A Homeobox protein NKX-2. 99.7 6.2E-19 2.1E-23 91.0 -1.2 42 2-43 17-58 (58)
20 2da5_A Zinc fingers and homeob 99.7 4.5E-19 1.5E-23 96.4 -2.1 45 1-45 21-65 (75)
21 2l7z_A Homeobox protein HOX-A1 99.7 9.3E-19 3.2E-23 94.6 -0.9 44 2-45 22-65 (73)
22 1jgg_A Segmentation protein EV 99.7 5.3E-19 1.8E-23 92.3 -1.9 44 2-45 16-59 (60)
23 2dmt_A Homeobox protein BARH-l 99.7 7.6E-19 2.6E-23 96.3 -1.4 44 2-45 32-75 (80)
24 1nk2_P Homeobox protein VND; h 99.7 4.7E-19 1.6E-23 96.5 -2.3 45 1-45 23-67 (77)
25 2kt0_A Nanog, homeobox protein 99.7 1.3E-18 4.4E-23 95.9 -0.7 44 2-45 37-80 (84)
26 1puf_A HOX-1.7, homeobox prote 99.7 1E-18 3.5E-23 95.2 -1.1 45 2-46 28-72 (77)
27 2dmu_A Homeobox protein goosec 99.7 7E-19 2.4E-23 94.2 -1.7 45 1-45 21-65 (70)
28 2da2_A Alpha-fetoprotein enhan 99.7 9.1E-19 3.1E-23 93.7 -1.5 44 2-45 22-65 (70)
29 2e1o_A Homeobox protein PRH; D 99.7 8.4E-19 2.9E-23 94.0 -1.7 44 2-45 22-65 (70)
30 1bw5_A ISL-1HD, insulin gene e 99.7 1.3E-18 4.3E-23 92.3 -1.0 44 2-45 18-61 (66)
31 1uhs_A HOP, homeodomain only p 99.7 9.6E-19 3.3E-23 94.2 -1.5 45 1-45 15-60 (72)
32 2ecc_A Homeobox and leucine zi 99.7 8.8E-19 3E-23 96.1 -1.7 45 1-45 17-61 (76)
33 1zq3_P PRD-4, homeotic bicoid 99.7 1.4E-18 4.9E-23 92.7 -1.2 44 2-45 17-60 (68)
34 2hi3_A Homeodomain-only protei 99.7 3.1E-19 1E-23 96.5 -4.0 44 2-45 17-61 (73)
35 1akh_A Protein (mating-type pr 99.7 1.5E-18 5.2E-23 90.6 -1.2 42 2-43 20-61 (61)
36 1wh5_A ZF-HD homeobox family p 99.7 3.2E-18 1.1E-22 94.3 -0.0 44 2-45 32-79 (80)
37 1ftt_A TTF-1 HD, thyroid trans 99.7 1.2E-18 4.2E-23 93.0 -1.8 44 2-45 17-60 (68)
38 1ahd_P Antennapedia protein mu 99.7 7.3E-19 2.5E-23 93.9 -2.7 44 2-45 17-60 (68)
39 2da3_A Alpha-fetoprotein enhan 99.7 1.6E-18 5.6E-23 94.6 -1.8 44 2-45 32-75 (80)
40 2ly9_A Zinc fingers and homeob 99.7 2.5E-18 8.7E-23 92.8 -1.0 44 2-45 21-64 (74)
41 1du6_A PBX1, homeobox protein 99.7 6.1E-18 2.1E-22 89.1 0.4 43 2-44 18-63 (64)
42 2k40_A Homeobox expressed in E 99.7 2.3E-18 7.8E-23 91.5 -1.3 44 2-45 16-59 (67)
43 1fjl_A Paired protein; DNA-bin 99.7 2.4E-18 8.1E-23 94.5 -1.3 45 2-46 33-77 (81)
44 2da1_A Alpha-fetoprotein enhan 99.7 1.1E-18 3.8E-23 93.4 -2.6 44 2-45 22-65 (70)
45 1b8i_A Ultrabithorax, protein 99.7 2.2E-18 7.7E-23 94.8 -1.6 44 2-45 35-78 (81)
46 2dn0_A Zinc fingers and homeob 99.7 2.1E-18 7.3E-23 93.7 -1.7 45 1-45 22-66 (76)
47 1k61_A Mating-type protein alp 99.7 2.3E-18 7.7E-23 89.8 -1.6 45 1-45 12-59 (60)
48 3a01_A Homeodomain-containing 99.7 1.3E-18 4.5E-23 97.9 -2.7 46 2-47 32-77 (93)
49 2r5y_A Homeotic protein sex co 99.7 3.1E-18 1.1E-22 95.3 -1.3 44 2-45 43-86 (88)
50 2m0c_A Homeobox protein arista 99.7 4.1E-18 1.4E-22 91.9 -1.4 44 2-45 24-67 (75)
51 1b72_B Protein (PBX1); homeodo 99.6 8.6E-18 2.9E-22 93.1 -0.3 44 2-45 16-62 (87)
52 1wh7_A ZF-HD homeobox family p 99.6 1.2E-17 4.2E-22 92.0 0.4 43 2-45 32-79 (80)
53 1b72_A Protein (homeobox prote 99.6 4.8E-18 1.7E-22 96.0 -1.4 44 2-45 49-92 (97)
54 1yz8_P Pituitary homeobox 2; D 99.6 1.3E-18 4.4E-23 92.8 -4.1 44 2-45 18-61 (68)
55 1le8_B Mating-type protein alp 99.6 8E-18 2.7E-22 92.9 -1.6 47 1-47 16-65 (83)
56 3nar_A ZHX1, zinc fingers and 99.6 1E-17 3.5E-22 94.6 -1.4 44 2-45 40-83 (96)
57 2cuf_A FLJ21616 protein; homeo 99.6 9.8E-18 3.4E-22 94.4 -1.9 46 1-46 21-81 (95)
58 2da4_A Hypothetical protein DK 99.6 3.7E-18 1.3E-22 93.5 -3.6 44 2-45 23-70 (80)
59 1puf_B PRE-B-cell leukemia tra 99.6 2.1E-17 7.3E-22 89.0 -1.4 44 2-45 16-62 (73)
60 1x2n_A Homeobox protein pknox1 99.6 2E-17 6.7E-22 89.2 -1.6 44 2-45 22-68 (73)
61 2da6_A Hepatocyte nuclear fact 99.6 8.9E-17 3.1E-21 92.3 -0.1 61 1-63 20-101 (102)
62 3k2a_A Homeobox protein MEIS2; 99.6 3.3E-17 1.1E-21 87.4 -1.8 44 2-45 13-59 (67)
63 1mnm_C Protein (MAT alpha-2 tr 99.6 5.7E-17 1.9E-21 90.0 -1.3 42 2-43 42-86 (87)
64 1au7_A Protein PIT-1, GHF-1; c 99.6 7.2E-17 2.5E-21 97.0 -1.2 44 2-45 102-145 (146)
65 1e3o_C Octamer-binding transcr 99.6 7.5E-17 2.6E-21 98.0 -1.5 44 2-45 116-159 (160)
66 2xsd_C POU domain, class 3, tr 99.6 8.1E-17 2.8E-21 98.4 -1.4 45 2-46 114-158 (164)
67 2dmn_A Homeobox protein TGIF2L 99.6 6.7E-17 2.3E-21 89.3 -1.8 44 2-45 22-68 (83)
68 3d1n_I POU domain, class 6, tr 99.6 9.1E-17 3.1E-21 96.8 -1.5 43 2-44 108-150 (151)
69 3l1p_A POU domain, class 5, tr 99.6 1.3E-16 4.4E-21 96.6 -1.3 44 2-45 111-154 (155)
70 1lfb_A Liver transcription fac 99.6 1.7E-16 5.9E-21 90.5 -1.1 49 1-49 23-92 (99)
71 2d5v_A Hepatocyte nuclear fact 99.5 5.7E-16 1.9E-20 94.1 -0.6 44 2-45 112-155 (164)
72 1wi3_A DNA-binding protein SAT 99.5 6.7E-16 2.3E-20 83.2 -0.7 39 2-40 22-61 (71)
73 1mh3_A Maltose binding-A1 home 99.5 2.7E-15 9.3E-20 98.8 -0.3 42 2-43 380-421 (421)
74 2da7_A Zinc finger homeobox pr 99.5 2.9E-15 1E-19 80.9 -0.9 40 1-40 19-58 (71)
75 2lk2_A Homeobox protein TGIF1; 99.4 8.1E-15 2.8E-19 82.3 -1.4 44 2-45 20-66 (89)
76 1ic8_A Hepatocyte nuclear fact 99.3 2.9E-14 1E-18 89.3 -4.2 43 2-44 130-193 (194)
77 2h8r_A Hepatocyte nuclear fact 99.2 1.1E-12 3.7E-17 83.6 -1.1 42 2-43 157-219 (221)
78 2nzz_A Penetratin conjugated G 98.9 1.4E-10 4.7E-15 55.6 0.2 20 29-48 1-20 (37)
79 2ys9_A Homeobox and leucine zi 96.2 0.00066 2.2E-08 36.2 -0.3 37 2-38 21-57 (70)
80 1jko_C HIN recombinase, DNA-in 67.6 1 3.6E-05 20.4 -0.1 23 17-39 24-46 (52)
81 1tc3_C Protein (TC3 transposas 67.3 0.94 3.2E-05 20.2 -0.3 22 17-38 24-45 (51)
82 2glo_A Brinker CG9653-PA; prot 64.5 1.1 3.9E-05 21.7 -0.3 20 17-36 28-47 (59)
83 2kvr_A Ubiquitin carboxyl-term 62.6 4.5 0.00015 23.2 2.0 23 17-39 72-94 (130)
84 2xi8_A Putative transcription 60.2 2 6.9E-05 20.3 0.2 24 17-40 17-40 (66)
85 3mb2_B 4-oxalocrotonate tautom 60.1 7 0.00024 20.6 2.2 38 1-38 2-47 (72)
86 2x48_A CAG38821; archeal virus 59.0 1.6 5.5E-05 20.5 -0.4 20 17-36 34-53 (55)
87 2r1j_L Repressor protein C2; p 58.9 2.2 7.5E-05 20.3 0.2 24 17-40 21-44 (68)
88 1zug_A Phage 434 CRO protein; 58.8 4 0.00014 19.5 1.2 24 17-40 19-42 (71)
89 3fmy_A HTH-type transcriptiona 58.7 9.5 0.00033 18.9 2.7 24 17-40 27-50 (73)
90 1rzs_A Antirepressor, regulato 55.9 2.9 9.8E-05 20.5 0.3 19 17-35 13-31 (61)
91 3bs3_A Putative DNA-binding pr 55.7 2.6 8.9E-05 20.6 0.1 24 17-40 26-49 (76)
92 1j9i_A GPNU1 DBD;, terminase s 54.2 3.2 0.00011 20.7 0.3 23 17-39 5-27 (68)
93 3omt_A Uncharacterized protein 53.9 3.1 0.00011 20.4 0.2 24 17-40 24-47 (73)
94 3bd1_A CRO protein; transcript 53.2 1.9 6.5E-05 21.7 -0.7 23 17-39 14-36 (79)
95 1adr_A P22 C2 repressor; trans 53.2 3.1 0.00011 20.2 0.2 24 17-40 21-44 (76)
96 3o9x_A Uncharacterized HTH-typ 52.4 10 0.00036 20.8 2.3 23 18-40 88-110 (133)
97 2b5a_A C.BCLI; helix-turn-heli 52.2 3.2 0.00011 20.3 0.1 23 17-39 26-48 (77)
98 1r69_A Repressor protein CI; g 52.0 3.3 0.00011 19.7 0.2 24 17-40 17-40 (69)
99 3kz3_A Repressor protein CI; f 51.7 3.4 0.00012 20.7 0.2 23 18-40 29-51 (80)
100 1y7y_A C.AHDI; helix-turn-heli 49.2 4 0.00014 19.7 0.2 23 17-39 29-51 (74)
101 3b7h_A Prophage LP1 protein 11 48.9 3.8 0.00013 20.1 0.1 23 17-39 23-45 (78)
102 2kpj_A SOS-response transcript 48.4 4 0.00014 21.2 0.1 24 17-40 25-48 (94)
103 3t76_A VANU, transcriptional r 48.1 6 0.00021 20.9 0.8 23 17-39 40-62 (88)
104 2jn6_A Protein CGL2762, transp 45.0 3.8 0.00013 21.5 -0.3 21 17-37 26-46 (97)
105 2rn7_A IS629 ORFA; helix, all 44.9 3.8 0.00013 21.8 -0.3 22 16-37 32-53 (108)
106 2elh_A CG11849-PA, LD40883P; s 44.5 4 0.00014 21.2 -0.3 20 17-36 41-60 (87)
107 2a6c_A Helix-turn-helix motif; 43.6 4.8 0.00016 20.4 -0.0 23 17-39 34-56 (83)
108 2hin_A GP39, repressor protein 43.0 4.7 0.00016 20.8 -0.1 21 17-37 13-33 (71)
109 2ef8_A C.ECOT38IS, putative tr 42.3 5.7 0.00019 19.7 0.1 24 17-40 26-49 (84)
110 8tfv_A Protein (thanatin); bac 41.6 6.5 0.00022 15.6 0.2 14 27-40 2-15 (21)
111 3f6w_A XRE-family like protein 41.1 6.2 0.00021 19.6 0.2 22 18-39 31-52 (83)
112 2ict_A Antitoxin HIGA; helix-t 41.0 5.1 0.00017 20.6 -0.2 23 17-39 24-46 (94)
113 2k9q_A Uncharacterized protein 41.0 6.2 0.00021 19.5 0.2 23 17-39 18-40 (77)
114 1xwr_A Regulatory protein CII; 40.2 12 0.00041 20.5 1.2 17 18-34 27-43 (97)
115 2k27_A Paired box protein PAX- 39.8 6.8 0.00023 22.2 0.2 20 18-37 45-64 (159)
116 2l49_A C protein; P2 bacteriop 39.8 8.4 0.00029 19.8 0.6 24 17-40 20-43 (99)
117 1lmb_3 Protein (lambda repress 39.8 6.7 0.00023 19.9 0.2 23 18-40 34-56 (92)
118 3plu_A Ubiquitin-like modifier 39.2 14 0.00048 20.1 1.4 28 16-43 47-74 (93)
119 1pdn_C Protein (PRD paired); p 38.3 4.5 0.00015 21.5 -0.7 20 18-37 37-56 (128)
120 2wiu_B HTH-type transcriptiona 37.6 5.3 0.00018 20.1 -0.5 23 17-39 28-50 (88)
121 2jml_A DNA binding domain/tran 37.0 5.4 0.00019 20.4 -0.5 20 17-36 8-27 (81)
122 3s8q_A R-M controller protein; 36.9 8.1 0.00028 19.2 0.2 23 17-39 27-49 (82)
123 3iz6_M 40S ribosomal protein S 36.2 53 0.0018 19.4 3.7 30 10-39 57-87 (152)
124 1u78_A TC3 transposase, transp 35.5 5.7 0.00019 21.6 -0.6 21 17-37 25-45 (141)
125 1neq_A DNA-binding protein NER 34.8 9.4 0.00032 19.4 0.2 20 18-37 26-45 (74)
126 2pij_A Prophage PFL 6 CRO; tra 34.5 7 0.00024 18.7 -0.3 23 17-39 16-38 (67)
127 2jpc_A SSRB; DNA binding prote 33.8 4.4 0.00015 19.1 -1.1 20 18-37 17-36 (61)
128 3qq6_A HTH-type transcriptiona 33.5 9.8 0.00034 19.0 0.2 20 18-37 27-46 (78)
129 1k78_A Paired box protein PAX5 33.0 6.2 0.00021 22.0 -0.7 20 18-37 52-71 (149)
130 3u5c_S 40S ribosomal protein S 32.9 61 0.0021 19.0 3.6 30 10-39 59-89 (146)
131 2ppx_A AGR_C_3184P, uncharacte 32.6 10 0.00034 19.8 0.1 23 18-40 47-69 (99)
132 2jrt_A Uncharacterized protein 30.7 9.1 0.00031 20.8 -0.3 21 17-37 52-72 (95)
133 1x57_A Endothelial differentia 30.7 9 0.00031 19.5 -0.3 24 17-40 29-52 (91)
134 2ofy_A Putative XRE-family tra 30.3 11 0.00039 18.8 0.1 23 17-39 30-52 (86)
135 3vk0_A NHTF, transcriptional r 30.2 14 0.00049 19.7 0.5 23 18-40 38-60 (114)
136 1ku3_A Sigma factor SIGA; heli 29.9 9.5 0.00032 18.8 -0.3 20 17-36 33-52 (73)
137 2jvl_A TRMBF1; coactivator, he 29.4 14 0.00049 19.7 0.4 23 17-39 52-74 (107)
138 2p7v_B Sigma-70, RNA polymeras 29.2 9.9 0.00034 18.5 -0.3 21 17-37 28-48 (68)
139 1hlv_A CENP-B, major centromer 29.0 8.3 0.00029 21.0 -0.6 21 19-39 30-50 (131)
140 3op9_A PLI0006 protein; struct 28.7 11 0.00037 20.0 -0.2 24 17-40 25-48 (114)
141 1b0n_A Protein (SINR protein); 28.5 13 0.00046 19.3 0.2 21 17-37 17-37 (111)
142 1rr7_A Middle operon regulator 27.8 13 0.00045 21.1 0.1 18 16-33 94-111 (129)
143 1x3u_A Transcriptional regulat 27.7 3.3 0.00011 20.6 -2.3 23 17-39 34-56 (79)
144 3cec_A Putative antidote prote 27.3 14 0.00049 19.2 0.2 23 18-40 35-57 (104)
145 2eby_A Putative HTH-type trans 27.3 14 0.00046 19.6 0.1 24 17-40 27-50 (113)
146 2ewt_A BLDD, putative DNA-bind 27.2 12 0.0004 17.8 -0.2 22 18-39 25-48 (71)
147 2o8x_A Probable RNA polymerase 26.8 11 0.00038 17.9 -0.3 20 17-36 34-53 (70)
148 1r8d_A Transcription activator 26.6 13 0.00044 20.1 -0.1 20 18-37 6-25 (109)
149 2vz4_A Tipal, HTH-type transcr 26.4 11 0.00037 20.4 -0.4 20 18-37 5-24 (108)
150 2gqb_A Conserved hypothetical 26.3 52 0.0018 19.1 2.4 18 12-29 81-98 (130)
151 3eus_A DNA-binding protein; st 25.9 15 0.00052 18.6 0.1 22 18-39 31-52 (86)
152 3g5g_A Regulatory protein; tra 25.8 16 0.00055 19.3 0.2 23 17-39 44-66 (99)
153 2cw1_A SN4M; lambda CRO fold, 25.2 11 0.00037 19.0 -0.6 23 17-39 16-38 (65)
154 3ivp_A Putative transposon-rel 24.7 15 0.0005 19.9 -0.1 23 18-40 29-51 (126)
155 1fse_A GERE; helix-turn-helix 24.7 8 0.00027 18.7 -1.1 21 17-37 29-49 (74)
156 3n3k_B Ubiquitin; hydrolase, p 24.5 48 0.0016 16.3 1.9 26 15-40 28-53 (85)
157 2fjr_A Repressor protein CI; g 24.4 15 0.0005 21.2 -0.2 23 17-39 23-45 (189)
158 3f52_A CLP gene regulator (CLG 24.4 16 0.00056 19.4 0.1 22 18-39 45-66 (117)
159 3mlf_A Transcriptional regulat 24.0 14 0.00048 19.9 -0.3 23 17-39 39-61 (111)
160 1uxc_A FRUR (1-57), fructose r 23.8 37 0.0013 16.7 1.4 22 18-39 4-25 (65)
161 2l8n_A Transcriptional repress 23.7 25 0.00085 17.5 0.7 24 17-40 12-35 (67)
162 1qgp_A Protein (double strande 23.1 19 0.00064 18.4 0.1 16 18-33 35-50 (77)
163 1qbj_A Protein (double-strande 23.0 19 0.00063 18.8 0.1 17 17-33 30-46 (81)
164 1p4w_A RCSB; solution structur 22.8 9.5 0.00033 20.5 -1.1 20 18-37 53-72 (99)
165 3i9v_2 NADH-quinone oxidoreduc 22.7 34 0.0012 20.5 1.2 24 9-32 38-61 (181)
166 3trb_A Virulence-associated pr 22.7 20 0.00067 19.3 0.2 24 17-40 30-53 (104)
167 1tuz_A Diacylglycerol kinase a 22.7 25 0.00087 19.7 0.6 28 10-37 6-33 (118)
168 3hug_A RNA polymerase sigma fa 22.6 15 0.00052 18.9 -0.3 21 17-37 56-76 (92)
169 1je8_A Nitrate/nitrite respons 22.4 9.6 0.00033 19.5 -1.1 21 17-37 39-59 (82)
170 3lsg_A Two-component response 22.2 12 0.00042 19.4 -0.7 22 17-38 22-43 (103)
171 3bdn_A Lambda repressor; repre 21.7 21 0.00073 21.2 0.2 23 17-39 33-55 (236)
172 2ylm_A Ubiquitin carboxyl-term 21.3 32 0.0011 23.9 1.0 24 16-39 51-74 (530)
173 1zs4_A Regulatory protein CII; 21.3 17 0.00057 19.5 -0.3 17 18-34 28-44 (83)
174 1tty_A Sigma-A, RNA polymerase 21.3 17 0.00059 18.6 -0.3 21 17-37 41-61 (87)
175 3mtn_B UBA80, ubcep1, ubiquiti 21.0 64 0.0022 15.7 2.0 27 15-41 28-54 (85)
176 3kyd_D Small ubiquitin-related 20.9 79 0.0027 17.6 2.5 37 6-42 55-92 (115)
177 3c57_A Two component transcrip 20.6 11 0.00039 19.7 -1.1 20 18-37 46-65 (95)
178 1q06_A Transcriptional regulat 20.6 20 0.00069 20.2 -0.1 20 18-37 4-23 (135)
179 1wm3_A Ubiquitin-like protein 20.5 91 0.0031 15.3 2.9 31 12-42 23-53 (72)
180 3a9j_A Ubiquitin; protein comp 20.5 50 0.0017 15.7 1.4 25 15-39 25-49 (76)
No 1
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.78 E-value=6.8e-21 Score=101.61 Aligned_cols=45 Identities=13% Similarity=0.105 Sum_probs=42.3
Q ss_pred Cchhhh-ccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 1 MDSLEF-HYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 1 ~~e~~F-~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
.||..| ..++||+..++.+||.+|||+++||+|||||||+++|+.
T Consensus 14 ~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 14 ILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 389999 679999999999999999999999999999999999976
No 2
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=1.3e-20 Score=106.03 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=42.4
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccchH
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNTA 46 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~~ 46 (64)
||..|..++||+..++.+||..|||+++||+|||||||++.++..
T Consensus 26 Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 26 LQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 899999999999999999999999999999999999999887653
No 3
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=2.5e-19 Score=98.25 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=44.7
Q ss_pred CchhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccchHHHH
Q psy8538 1 MDSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNTAIIV 49 (64)
Q Consensus 1 ~~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~~~~~ 49 (64)
.||..|..++||+..++..||..+||++.+|+|||||||+++|+.....
T Consensus 21 ~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 21 ALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 3899999999999999999999999999999999999999999774433
No 4
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=8.4e-20 Score=100.09 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=42.8
Q ss_pred CchhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 1 MDSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 1 ~~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
.||..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 21 ~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~ 65 (80)
T 2dms_A 21 VLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 65 (80)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHH
Confidence 389999999999999999999999999999999999999998876
No 5
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.73 E-value=8.7e-20 Score=94.30 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=42.0
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 12 Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 12 LERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 89999999999999999999999999999999999999988864
No 6
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2e-19 Score=95.54 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=42.3
Q ss_pred CchhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 1 MDSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 1 ~~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
.||..|..++||+..++..||..+||++++|+|||||||++.++.
T Consensus 17 ~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 17 LLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred HHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 389999999999999999999999999999999999999988763
No 7
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=1.4e-19 Score=98.00 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=42.8
Q ss_pred Cchhhh-ccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 1 MDSLEF-HYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 1 ~~e~~F-~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
.||..| ..++||+..++.+||..+||++++|+|||||||+++|+.
T Consensus 22 ~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 22 TLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 389999 999999999999999999999999999999999999876
No 8
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.72 E-value=2e-19 Score=96.97 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=42.6
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++++|+|||||||+++|+.
T Consensus 19 LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~ 62 (69)
T 2l9r_A 19 LERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRK 62 (69)
T ss_dssp HHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhh
Confidence 89999999999999999999999999999999999999999876
No 9
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-19 Score=98.54 Aligned_cols=44 Identities=14% Similarity=0.109 Sum_probs=42.4
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 22 Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (80)
T 2dmq_A 22 MKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN 65 (80)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999876
No 10
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.71 E-value=3.9e-19 Score=93.29 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=42.2
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 18 Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 18 LKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp HHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 89999999999999999999999999999999999999999864
No 11
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.71 E-value=2.1e-19 Score=93.81 Aligned_cols=45 Identities=18% Similarity=0.235 Sum_probs=41.1
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccchH
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNTA 46 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~~ 46 (64)
||..|..++||+..++..||..+||++.+|++||||||++.|+..
T Consensus 14 Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 14 LEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 899999999999999999999999999999999999999988763
No 12
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=6.6e-20 Score=102.65 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=42.6
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccchH
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNTA 46 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~~ 46 (64)
||..|..++||+..++..||..+||++.+|+|||||||+++++..
T Consensus 28 Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 28 LEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 899999999999999999999999999999999999999887763
No 13
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=3.8e-19 Score=95.35 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=42.7
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 22 Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (70)
T 2cra_A 22 LEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKS 65 (70)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhccc
Confidence 89999999999999999999999999999999999999999976
No 14
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=2.2e-19 Score=93.00 Aligned_cols=43 Identities=26% Similarity=0.378 Sum_probs=41.3
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccc
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNN 44 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~ 44 (64)
||..|..++||+..++..||..+||++.+|++||||||+++|+
T Consensus 15 Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 15 LERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp HHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 8999999999999999999999999999999999999998875
No 15
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.71 E-value=2.7e-19 Score=93.68 Aligned_cols=43 Identities=30% Similarity=0.437 Sum_probs=41.3
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccc
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNN 44 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~ 44 (64)
||..|..++||+..++..||..+||++.+|++||||||+++|+
T Consensus 18 Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 18 LKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 8999999999999999999999999999999999999998875
No 16
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.70 E-value=3.1e-19 Score=95.61 Aligned_cols=45 Identities=11% Similarity=0.017 Sum_probs=42.3
Q ss_pred CchhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 1 MDSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 1 ~~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
.||..|..++||+..++.+||..+||++++|++||||||++.|+.
T Consensus 18 ~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 18 HLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp HHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 389999999999999999999999999999999999999888754
No 17
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.70 E-value=4.1e-19 Score=93.57 Aligned_cols=44 Identities=27% Similarity=0.376 Sum_probs=42.0
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 18 Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 18 LEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 89999999999999999999999999999999999999988864
No 18
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.8e-19 Score=94.13 Aligned_cols=45 Identities=27% Similarity=0.395 Sum_probs=43.0
Q ss_pred CchhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 1 MDSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 1 ~~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
.||..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 21 ~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 21 ALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 389999999999999999999999999999999999999999876
No 19
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.70 E-value=6.2e-19 Score=90.95 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=40.0
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCccccc
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNN 43 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k 43 (64)
||..|..++||+..++..||..+||++.+|++||||||+++|
T Consensus 17 Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 17 LERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 799999999999999999999999999999999999998764
No 20
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=4.5e-19 Score=96.36 Aligned_cols=45 Identities=9% Similarity=-0.006 Sum_probs=42.7
Q ss_pred CchhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 1 MDSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 1 ~~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
.||..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 21 ~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (75)
T 2da5_A 21 ALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAE 65 (75)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHS
T ss_pred HHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHh
Confidence 389999999999999999999999999999999999999988876
No 21
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.69 E-value=9.3e-19 Score=94.63 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=42.4
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 22 Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 22 LEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHH
Confidence 89999999999999999999999999999999999999998876
No 22
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.69 E-value=5.3e-19 Score=92.28 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=41.8
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 16 Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 16 LEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp HHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 89999999999999999999999999999999999999988764
No 23
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=7.6e-19 Score=96.31 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=42.5
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|+|||||||+++|+.
T Consensus 32 Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 32 LEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 89999999999999999999999999999999999999998876
No 24
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.69 E-value=4.7e-19 Score=96.54 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=42.8
Q ss_pred CchhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 1 MDSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 1 ~~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
.||..|..++||+..++..||..+||++.+|+|||||||+++|+.
T Consensus 23 ~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~ 67 (77)
T 1nk2_P 23 ELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67 (77)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhh
Confidence 389999999999999999999999999999999999999998876
No 25
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-18 Score=95.93 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=42.5
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|+|||||||+++|+.
T Consensus 37 Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 80 (84)
T 2kt0_A 37 LNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW 80 (84)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999876
No 26
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.69 E-value=1e-18 Score=95.20 Aligned_cols=45 Identities=29% Similarity=0.336 Sum_probs=43.0
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccchH
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNTA 46 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~~ 46 (64)
||..|..++||+..++..||..+||++.+|+|||||||+++|+..
T Consensus 28 Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 72 (77)
T 1puf_A 28 LEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999999999998763
No 27
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=7e-19 Score=94.23 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=42.6
Q ss_pred CchhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 1 MDSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 1 ~~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
.||..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 21 ~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 21 ALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehcccccccccccc
Confidence 389999999999999999999999999999999999999988865
No 28
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.68 E-value=9.1e-19 Score=93.70 Aligned_cols=44 Identities=16% Similarity=0.075 Sum_probs=42.3
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 22 Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 22 LQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 89999999999999999999999999999999999999998875
No 29
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=8.4e-19 Score=94.00 Aligned_cols=44 Identities=25% Similarity=0.295 Sum_probs=42.3
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 22 Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2e1o_A 22 LEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRS 65 (70)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCC
Confidence 89999999999999999999999999999999999999998876
No 30
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.68 E-value=1.3e-18 Score=92.32 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=42.4
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 18 Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 18 LRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp HHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 89999999999999999999999999999999999999998876
No 31
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=9.6e-19 Score=94.21 Aligned_cols=45 Identities=16% Similarity=0.079 Sum_probs=42.4
Q ss_pred Cchhhhcc-CCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 1 MDSLEFHY-SRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 1 ~~e~~F~~-~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
.||..|.. ++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 15 ~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~ 60 (72)
T 1uhs_A 15 ILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 60 (72)
T ss_dssp HHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhh
Confidence 38999996 9999999999999999999999999999999998876
No 32
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=8.8e-19 Score=96.10 Aligned_cols=45 Identities=9% Similarity=-0.009 Sum_probs=42.5
Q ss_pred CchhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 1 MDSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 1 ~~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
.||..|..++||+..++.+||..+||++.||+|||||+|++.|+.
T Consensus 17 ~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 17 ILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 389999999999999999999999999999999999999988765
No 33
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.68 E-value=1.4e-18 Score=92.71 Aligned_cols=44 Identities=25% Similarity=0.261 Sum_probs=42.3
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 17 Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~ 60 (68)
T 1zq3_P 17 LEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ 60 (68)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHH
Confidence 89999999999999999999999999999999999999988876
No 34
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=3.1e-19 Score=96.47 Aligned_cols=44 Identities=16% Similarity=0.062 Sum_probs=41.9
Q ss_pred chhhhcc-CCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHY-SRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~-~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|.. ++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 17 Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~ 61 (73)
T 2hi3_A 17 LEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 61 (73)
T ss_dssp HHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 8999994 9999999999999999999999999999999998876
No 35
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.68 E-value=1.5e-18 Score=90.60 Aligned_cols=42 Identities=19% Similarity=0.170 Sum_probs=39.6
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCccccc
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNN 43 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k 43 (64)
||..|..++||+..++..||..+||++.+|++||||||+++|
T Consensus 20 Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 20 LEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 899999999999999999999999999999999999998764
No 36
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.67 E-value=3.2e-18 Score=94.26 Aligned_cols=44 Identities=5% Similarity=-0.079 Sum_probs=41.6
Q ss_pred chhhhcc----CCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHY----SRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~----~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|.. ++||+..++.+||..+||++.+|+|||||||++.+..
T Consensus 32 Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 32 MLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp HHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred HHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 7889998 9999999999999999999999999999999998753
No 37
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.67 E-value=1.2e-18 Score=92.98 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=42.3
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 17 Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 60 (68)
T 1ftt_A 17 LERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 60 (68)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhh
Confidence 89999999999999999999999999999999999999988876
No 38
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.67 E-value=7.3e-19 Score=93.93 Aligned_cols=44 Identities=34% Similarity=0.532 Sum_probs=42.3
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 17 Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 60 (68)
T 1ahd_P 17 LEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 60 (68)
T ss_dssp HHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHh
Confidence 89999999999999999999999999999999999999988866
No 39
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-18 Score=94.57 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=42.2
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 32 Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 32 LYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 89999999999999999999999999999999999999988875
No 40
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.67 E-value=2.5e-18 Score=92.79 Aligned_cols=44 Identities=9% Similarity=0.093 Sum_probs=42.4
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|++||||||++.|+.
T Consensus 21 Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 64 (74)
T 2ly9_A 21 LKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNS 64 (74)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhh
Confidence 89999999999999999999999999999999999999998876
No 41
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=6.1e-18 Score=89.09 Aligned_cols=43 Identities=21% Similarity=0.106 Sum_probs=41.1
Q ss_pred chhhh---ccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccc
Q psy8538 2 DSLEF---HYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNN 44 (64)
Q Consensus 2 ~e~~F---~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~ 44 (64)
||..| ..++||+..++..||..+||++.||++||||+|++.|+
T Consensus 18 Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 18 LNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp HHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred HHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 78899 89999999999999999999999999999999999875
No 42
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.66 E-value=2.3e-18 Score=91.55 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=42.2
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 16 Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (67)
T 2k40_A 16 LENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRS 59 (67)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHh
Confidence 89999999999999999999999999999999999999988876
No 43
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.66 E-value=2.4e-18 Score=94.45 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=42.8
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccchH
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNTA 46 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~~ 46 (64)
||..|..++||+..++..||..+||++.+|++||||||++.|+..
T Consensus 33 Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 33 LERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 899999999999999999999999999999999999999988763
No 44
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.66 E-value=1.1e-18 Score=93.37 Aligned_cols=44 Identities=11% Similarity=0.105 Sum_probs=42.3
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 22 Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 22 LRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp HHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 89999999999999999999999999999999999999988876
No 45
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.66 E-value=2.2e-18 Score=94.76 Aligned_cols=44 Identities=32% Similarity=0.452 Sum_probs=42.3
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|+|||||||+++|+.
T Consensus 35 Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 35 LEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 89999999999999999999999999999999999999998875
No 46
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.1e-18 Score=93.73 Aligned_cols=45 Identities=20% Similarity=0.104 Sum_probs=42.9
Q ss_pred CchhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 1 MDSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 1 ~~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
.||..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 22 ~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~ 66 (76)
T 2dn0_A 22 ALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNL 66 (76)
T ss_dssp HHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHh
Confidence 389999999999999999999999999999999999999999876
No 47
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.66 E-value=2.3e-18 Score=89.77 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=41.9
Q ss_pred Cchhhhcc---CCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 1 MDSLEFHY---SRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 1 ~~e~~F~~---~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
.||..|.. ++||+..++..||..+||++.||++||||+|+++|+.
T Consensus 12 ~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 12 ILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp HHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 37899999 9999999999999999999999999999999988764
No 48
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.66 E-value=1.3e-18 Score=97.93 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=43.4
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccchHH
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNTAI 47 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~~~ 47 (64)
||..|..++||+..++..||..+||++.+|+|||||||+++|+...
T Consensus 32 Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 32 LEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp HHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhH
Confidence 8999999999999999999999999999999999999999987743
No 49
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.66 E-value=3.1e-18 Score=95.27 Aligned_cols=44 Identities=34% Similarity=0.532 Sum_probs=42.2
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|+|||||||+++|+.
T Consensus 43 Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 43 LEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 89999999999999999999999999999999999999988865
No 50
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.65 E-value=4.1e-18 Score=91.92 Aligned_cols=44 Identities=16% Similarity=0.146 Sum_probs=42.2
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 24 Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 24 LEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 89999999999999999999999999999999999999988875
No 51
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.65 E-value=8.6e-18 Score=93.10 Aligned_cols=44 Identities=20% Similarity=0.107 Sum_probs=42.1
Q ss_pred chhhh---ccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEF---HYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F---~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..| ..++||+..++..||..+||++.||++||||+|++.|+.
T Consensus 16 Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~ 62 (87)
T 1b72_B 16 LNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 62 (87)
T ss_dssp HHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhc
Confidence 78899 899999999999999999999999999999999998877
No 52
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.65 E-value=1.2e-17 Score=92.01 Aligned_cols=43 Identities=7% Similarity=-0.002 Sum_probs=40.2
Q ss_pred chhhhcc-----CCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHY-----SRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~-----~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
|| .|.. ++||+...+.+||..+||++.+|+|||||||++.+..
T Consensus 32 Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 32 ML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp HH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred HH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 67 7988 9999999999999999999999999999999998753
No 53
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=4.8e-18 Score=96.02 Aligned_cols=44 Identities=27% Similarity=0.451 Sum_probs=42.3
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|+|||||||+++|+.
T Consensus 49 Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 49 LEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHH
Confidence 89999999999999999999999999999999999999998866
No 54
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.64 E-value=1.3e-18 Score=92.81 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=42.2
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 18 Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 61 (68)
T 1yz8_P 18 LEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 61 (68)
T ss_dssp HHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHH
Confidence 89999999999999999999999999999999999999988865
No 55
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.63 E-value=8e-18 Score=92.89 Aligned_cols=47 Identities=15% Similarity=0.120 Sum_probs=43.5
Q ss_pred Cchhhhcc---CCCCCHHHHHHHHHHhCCCCCcccccccCCcccccchHH
Q psy8538 1 MDSLEFHY---SRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNTAI 47 (64)
Q Consensus 1 ~~e~~F~~---~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~~~ 47 (64)
.||..|.. ++||+..++..||..+||++.||++||||||++.|+...
T Consensus 16 ~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 16 ILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp HHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 38899998 999999999999999999999999999999999988743
No 56
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.63 E-value=1e-17 Score=94.59 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=42.5
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|++||||||++.|+.
T Consensus 40 Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 83 (96)
T 3nar_A 40 LKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNG 83 (96)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhh
Confidence 89999999999999999999999999999999999999998876
No 57
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=9.8e-18 Score=94.44 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=43.2
Q ss_pred CchhhhccCCCCCHHHHHHHHHHhC---------------CCCCcccccccCCcccccchH
Q psy8538 1 MDSLEFHYSRYITIRRKAELANSLG---------------LSERQVRCPHHQLTTVNNNTA 46 (64)
Q Consensus 1 ~~e~~F~~~~~p~~~~r~~La~~l~---------------l~~~qV~vWFqNrR~~~k~~~ 46 (64)
.||..|..++||+..++..||..++ |++.+|++||||||+++|+..
T Consensus 21 ~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 21 VMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 3899999999999999999999999 999999999999999998773
No 58
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.7e-18 Score=93.47 Aligned_cols=44 Identities=9% Similarity=-0.070 Sum_probs=41.9
Q ss_pred chhhhccC----CCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYS----RYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~----~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..+ +||+..++..||..+||++.+|+|||||||++.|+.
T Consensus 23 Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 23 LKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp HHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 89999999 999999999999999999999999999999988864
No 59
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.61 E-value=2.1e-17 Score=89.01 Aligned_cols=44 Identities=20% Similarity=0.107 Sum_probs=41.7
Q ss_pred chhhh---ccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEF---HYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F---~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..| ..++||+..++..||..+||++.||++||||+|++.|+.
T Consensus 16 Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 62 (73)
T 1puf_B 16 LNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 62 (73)
T ss_dssp HHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccc
Confidence 78899 899999999999999999999999999999999988766
No 60
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=2e-17 Score=89.15 Aligned_cols=44 Identities=16% Similarity=-0.038 Sum_probs=40.9
Q ss_pred chhhhcc---CCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHY---SRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~---~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|.. ++||+..++..||..+||++.||++||||+|++.++.
T Consensus 22 Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 68 (73)
T 1x2n_A 22 MRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQS 68 (73)
T ss_dssp HHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccc
Confidence 7888965 9999999999999999999999999999999888765
No 61
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=8.9e-17 Score=92.25 Aligned_cols=61 Identities=8% Similarity=0.023 Sum_probs=48.7
Q ss_pred CchhhhccCCCCCHHHHHHHHHHh---------------------CCCCCcccccccCCcccccchHHHHHHHHHhcCCC
Q psy8538 1 MDSLEFHYSRYITIRRKAELANSL---------------------GLSERQVRCPHHQLTTVNNNTAIIVSFLEKVHGDG 59 (64)
Q Consensus 1 ~~e~~F~~~~~p~~~~r~~La~~l---------------------~l~~~qV~vWFqNrR~~~k~~~~~~~~~~~~~~~g 59 (64)
.||..|..++||+...+.+||..+ +|++.+|++||||||+++++..... .....+..
T Consensus 20 ~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr~~~~~--~~~~~~~~ 97 (102)
T 2da6_A 20 ILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAFRQKLA--MDAYSSNS 97 (102)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHHHHHHH--HSSSSSSC
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHHhhHhh--hccccCCC
Confidence 389999999999999999999999 7999999999999999998774433 33333444
Q ss_pred CCCC
Q psy8538 60 RNSS 63 (64)
Q Consensus 60 ~~ss 63 (64)
.+||
T Consensus 98 ~~~~ 101 (102)
T 2da6_A 98 GPSS 101 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 4443
No 62
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=3.3e-17 Score=87.44 Aligned_cols=44 Identities=18% Similarity=0.035 Sum_probs=41.4
Q ss_pred chhhhc---cCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFH---YSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~---~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
|+..|. .++||+..++..||..+||++.||++||||+|++.++.
T Consensus 13 L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~ 59 (67)
T 3k2a_A 13 MRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQP 59 (67)
T ss_dssp HHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHH
Confidence 788888 99999999999999999999999999999999988776
No 63
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.58 E-value=5.7e-17 Score=89.98 Aligned_cols=42 Identities=14% Similarity=0.084 Sum_probs=40.1
Q ss_pred chhhhcc---CCCCCHHHHHHHHHHhCCCCCcccccccCCccccc
Q psy8538 2 DSLEFHY---SRYITIRRKAELANSLGLSERQVRCPHHQLTTVNN 43 (64)
Q Consensus 2 ~e~~F~~---~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k 43 (64)
||..|.. ++||+..++..||..+||++.||++||||||+++|
T Consensus 42 Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 42 LESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp HHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 7899999 99999999999999999999999999999998776
No 64
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.58 E-value=7.2e-17 Score=97.02 Aligned_cols=44 Identities=14% Similarity=0.051 Sum_probs=42.3
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|+|||||||+++|+.
T Consensus 102 Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 102 LERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 89999999999999999999999999999999999999999875
No 65
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.57 E-value=7.5e-17 Score=98.03 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=42.3
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|+|||||||+++|+.
T Consensus 116 Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 116 LEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 89999999999999999999999999999999999999998874
No 66
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.57 E-value=8.1e-17 Score=98.45 Aligned_cols=45 Identities=18% Similarity=0.075 Sum_probs=43.2
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccchH
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNTA 46 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~~ 46 (64)
||..|..++||+..++..||..+||++.+|+|||||||+++|+..
T Consensus 114 LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 114 LESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 899999999999999999999999999999999999999999873
No 67
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.57 E-value=6.7e-17 Score=89.27 Aligned_cols=44 Identities=14% Similarity=-0.123 Sum_probs=39.8
Q ss_pred chhhhcc---CCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHY---SRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~---~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|.. ++||+..++..||..+||++.||++||||+|++.++.
T Consensus 22 L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~ 68 (83)
T 2dmn_A 22 LRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPD 68 (83)
T ss_dssp HHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHH
Confidence 6777765 6999999999999999999999999999999888765
No 68
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.57 E-value=9.1e-17 Score=96.76 Aligned_cols=43 Identities=19% Similarity=0.086 Sum_probs=41.5
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccc
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNN 44 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~ 44 (64)
||..|..++||+..++..||..+||++.+|+|||||||+++|+
T Consensus 108 Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 108 LNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 8999999999999999999999999999999999999998886
No 69
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.56 E-value=1.3e-16 Score=96.64 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=41.6
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+..++..||..+||++.+|+|||||||+++|+.
T Consensus 111 Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 111 LETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp HHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 78999999999999999999999999999999999999998874
No 70
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.55 E-value=1.7e-16 Score=90.49 Aligned_cols=49 Identities=10% Similarity=0.066 Sum_probs=43.1
Q ss_pred CchhhhccCCCCCHHHHHHHHHH------------------hC---CCCCcccccccCCcccccchHHHH
Q psy8538 1 MDSLEFHYSRYITIRRKAELANS------------------LG---LSERQVRCPHHQLTTVNNNTAIIV 49 (64)
Q Consensus 1 ~~e~~F~~~~~p~~~~r~~La~~------------------l~---l~~~qV~vWFqNrR~~~k~~~~~~ 49 (64)
+||..|..++||+...+.+||.. +| |++.+|++||||||+++++....+
T Consensus 23 ~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~k~~~~ 92 (99)
T 1lfb_A 23 ILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFRHKLA 92 (99)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCCC---
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHHhchhh
Confidence 38999999999999999999999 88 999999999999999988774433
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.52 E-value=5.7e-16 Score=94.09 Aligned_cols=44 Identities=11% Similarity=0.035 Sum_probs=42.5
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
||..|..++||+...+..||..+||++.+|+|||||||++.|+.
T Consensus 112 Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~ 155 (164)
T 2d5v_A 112 LHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDK 155 (164)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhcccccc
Confidence 89999999999999999999999999999999999999998876
No 72
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=6.7e-16 Score=83.19 Aligned_cols=39 Identities=13% Similarity=0.004 Sum_probs=37.3
Q ss_pred chhhhcc-CCCCCHHHHHHHHHHhCCCCCcccccccCCcc
Q psy8538 2 DSLEFHY-SRYITIRRKAELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 2 ~e~~F~~-~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
|+..|.. ++||+...+..||.++||++++|+|||||+|-
T Consensus 22 Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~ 61 (71)
T 1wi3_A 22 LQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRY 61 (71)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhcccee
Confidence 7888998 99999999999999999999999999999985
No 73
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.48 E-value=2.7e-15 Score=98.83 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=40.3
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCccccc
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVNN 43 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k 43 (64)
||+.|+.++||+..+|.+||.++||+++||++||||||.+.|
T Consensus 380 Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 380 LEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred HHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 789999999999999999999999999999999999998875
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.9e-15 Score=80.90 Aligned_cols=40 Identities=10% Similarity=0.019 Sum_probs=38.2
Q ss_pred CchhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCCcc
Q psy8538 1 MDSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 1 ~~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
+||..|..+++|+..++..||..+||+.+.|+|||||||+
T Consensus 19 ~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 19 VLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKV 58 (71)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccc
Confidence 3889999999999999999999999999999999999995
No 75
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.41 E-value=8.1e-15 Score=82.32 Aligned_cols=44 Identities=18% Similarity=-0.105 Sum_probs=38.6
Q ss_pred chhhhcc---CCCCCHHHHHHHHHHhCCCCCcccccccCCcccccch
Q psy8538 2 DSLEFHY---SRYITIRRKAELANSLGLSERQVRCPHHQLTTVNNNT 45 (64)
Q Consensus 2 ~e~~F~~---~~~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~k~~ 45 (64)
|+..|.. ++||+..++..||..+||++.||++||+|+|.+.++.
T Consensus 20 L~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~ 66 (89)
T 2lk2_A 20 LRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPD 66 (89)
T ss_dssp HHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhH
Confidence 4555644 8999999999999999999999999999999877765
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.29 E-value=2.9e-14 Score=89.29 Aligned_cols=43 Identities=7% Similarity=-0.033 Sum_probs=40.3
Q ss_pred chhhhccCCCCCHHHHHHHHHHhC---------------------CCCCcccccccCCcccccc
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLG---------------------LSERQVRCPHHQLTTVNNN 44 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~---------------------l~~~qV~vWFqNrR~~~k~ 44 (64)
||..|..++||+...|.+||..++ |++.+|++||||||++++.
T Consensus 130 Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 130 LFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp HHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhhc
Confidence 799999999999999999999999 9999999999999987763
No 77
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.19 E-value=1.1e-12 Score=83.60 Aligned_cols=42 Identities=7% Similarity=-0.001 Sum_probs=38.9
Q ss_pred chhhhccCCCCCHHHHHHHHHHhC---------------------CCCCcccccccCCccccc
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLG---------------------LSERQVRCPHHQLTTVNN 43 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~---------------------l~~~qV~vWFqNrR~~~k 43 (64)
||..|..++||+...|.+||..+| |++.+|++||||||+.+.
T Consensus 157 Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~~ 219 (221)
T 2h8r_A 157 LYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 219 (221)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhhh
Confidence 789999999999999999999988 899999999999997653
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.92 E-value=1.4e-10 Score=55.60 Aligned_cols=20 Identities=10% Similarity=0.008 Sum_probs=17.6
Q ss_pred CcccccccCCcccccchHHH
Q psy8538 29 RQVRCPHHQLTTVNNNTAII 48 (64)
Q Consensus 29 ~qV~vWFqNrR~~~k~~~~~ 48 (64)
+||+|||||||++.|+....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 58999999999999998554
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.21 E-value=0.00066 Score=36.23 Aligned_cols=37 Identities=14% Similarity=-0.032 Sum_probs=33.4
Q ss_pred chhhhccCCCCCHHHHHHHHHHhCCCCCcccccccCC
Q psy8538 2 DSLEFHYSRYITIRRKAELANSLGLSERQVRCPHHQL 38 (64)
Q Consensus 2 ~e~~F~~~~~p~~~~r~~La~~l~l~~~qV~vWFqNr 38 (64)
|+..|.....+...+...|+.+..|+..||+.||--+
T Consensus 21 L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 21 LERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp HHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 6788998999999999999999999999999999543
No 80
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=67.58 E-value=1 Score=20.39 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCCCcccccccCCc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR 39 (64)
..++|..+|++...|..|+....
T Consensus 24 ~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 24 RQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp HHHHHHTTSCCHHHHHHHSCTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHcc
Confidence 45789999999999999987544
No 81
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=67.31 E-value=0.94 Score=20.17 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=18.0
Q ss_pred HHHHHHHhCCCCCcccccccCC
Q psy8538 17 KAELANSLGLSERQVRCPHHQL 38 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNr 38 (64)
..++|..+|++...|..|...-
T Consensus 24 ~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 24 LHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHHCcCHHHHHHHHhhH
Confidence 4478999999999999987643
No 82
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=64.48 E-value=1.1 Score=21.71 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCCCccccccc
Q psy8538 17 KAELANSLGLSERQVRCPHH 36 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFq 36 (64)
..++|..+|++..+|..|..
T Consensus 28 ~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 28 QRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp HHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45789999999999999965
No 83
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=62.64 E-value=4.5 Score=23.23 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCCCcccccccCCc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR 39 (64)
...+|..+|++..++..|+-..|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 56799999999999999977544
No 84
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=60.22 E-value=2 Score=20.32 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCCCcccccccCCcc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
..+||..+|++...|..|..+.+.
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~~ 40 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKYN 40 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 357999999999999999987653
No 85
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=60.07 E-value=7 Score=20.59 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=28.7
Q ss_pred CchhhhccCCCCCHHHHHHHHH--------HhCCCCCcccccccCC
Q psy8538 1 MDSLEFHYSRYITIRRKAELAN--------SLGLSERQVRCPHHQL 38 (64)
Q Consensus 1 ~~e~~F~~~~~p~~~~r~~La~--------~l~l~~~qV~vWFqNr 38 (64)
|||=.+....-.+.+++..||. .+|.++..|+|-|.--
T Consensus 2 ~lev~~~~~~pRT~EQKralaeE~T~if~evLGcpPgsV~IVi~EV 47 (72)
T 3mb2_B 2 MLEVFYSGDRPPDRTRKQAFAAEASAIFQRVIGTPPGRLQLIIQIV 47 (72)
T ss_dssp EEEEEECCSSCCCHHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEEC
T ss_pred ceEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEec
Confidence 6777777777788888877775 4599999999877653
No 86
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=58.98 E-value=1.6 Score=20.52 Aligned_cols=20 Identities=45% Similarity=0.594 Sum_probs=16.4
Q ss_pred HHHHHHHhCCCCCccccccc
Q psy8538 17 KAELANSLGLSERQVRCPHH 36 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFq 36 (64)
..++|..+|++...|..|+.
T Consensus 34 ~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 34 VQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45789999999999888764
No 87
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=58.91 E-value=2.2 Score=20.30 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCCCcccccccCCcc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
..+||..+|++...|..|..+.+.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 357999999999999999887653
No 88
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=58.82 E-value=4 Score=19.52 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCCCcccccccCCcc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
..+||..+|++...|..|..+.+.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 357899999999999999988765
No 89
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=58.75 E-value=9.5 Score=18.85 Aligned_cols=24 Identities=8% Similarity=-0.065 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCCCcccccccCCcc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
..+||..+|++...|..|=.+.+.
T Consensus 27 q~elA~~~gvs~~tis~~E~G~~~ 50 (73)
T 3fmy_A 27 QKEASEIFGGGVNAFSRYEKGNAX 50 (73)
T ss_dssp HHHHHHHHCSCTTHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 357899999999999999887663
No 90
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=55.86 E-value=2.9 Score=20.49 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCCCcccccc
Q psy8538 17 KAELANSLGLSERQVRCPH 35 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWF 35 (64)
..+||..+|++...|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4579999999999999998
No 91
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=55.73 E-value=2.6 Score=20.61 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCCCcccccccCCcc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
..+||..+|++...|..|..+.+.
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~~ 49 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKSQ 49 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 357999999999999999987663
No 92
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=54.22 E-value=3.2 Score=20.66 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCCCcccccccCCc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR 39 (64)
..++|..||++...|..|-.+..
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~G~ 27 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQGM 27 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTTTC
T ss_pred HHHHHHHHCcCHHHHHHHHHCCC
Confidence 35789999999999999987754
No 93
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=53.90 E-value=3.1 Score=20.41 Aligned_cols=24 Identities=13% Similarity=-0.043 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCCCcccccccCCcc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
..+||..+|++...|..|..+++.
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~~ 47 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDVQ 47 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 347999999999999999988753
No 94
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=53.20 E-value=1.9 Score=21.72 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCCCcccccccCCc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR 39 (64)
..+||..+|++...|..|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 45799999999999999998766
No 95
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=53.17 E-value=3.1 Score=20.25 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCCCcccccccCCcc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
..+||..+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 357899999999999999887653
No 96
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=52.45 E-value=10 Score=20.77 Aligned_cols=23 Identities=9% Similarity=-0.038 Sum_probs=19.9
Q ss_pred HHHHHHhCCCCCcccccccCCcc
Q psy8538 18 AELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 18 ~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
.+||..+|++...|..|-.+++.
T Consensus 88 ~~la~~~g~s~~~i~~~E~g~~~ 110 (133)
T 3o9x_A 88 KEASEIFGGGVNAFSRYEKGNAQ 110 (133)
T ss_dssp HHHHHHHCSCTTHHHHHHHTSSC
T ss_pred HHHHHHHCCCHHHHHHHHCCCCC
Confidence 46899999999999999888664
No 97
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=52.21 E-value=3.2 Score=20.33 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCCCcccccccCCc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR 39 (64)
..+||..+|++...|..|..+.+
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 35789999999999999988765
No 98
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=52.03 E-value=3.3 Score=19.72 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCCCcccccccCCcc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
..+||..+|++...|..|..+.+.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 357999999999999999888764
No 99
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=51.66 E-value=3.4 Score=20.73 Aligned_cols=23 Identities=13% Similarity=0.372 Sum_probs=20.1
Q ss_pred HHHHHHhCCCCCcccccccCCcc
Q psy8538 18 AELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 18 ~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
.+||..+|++...|..|..+++.
T Consensus 29 ~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 29 ESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHhCcCHHHHHHHHcCCCC
Confidence 47999999999999999987764
No 100
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=49.24 E-value=4 Score=19.72 Aligned_cols=23 Identities=22% Similarity=0.102 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCCCcccccccCCc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR 39 (64)
..+||..+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 35789999999999999988764
No 101
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=48.89 E-value=3.8 Score=20.05 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCCCcccccccCCc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR 39 (64)
..+||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999988876
No 102
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=48.38 E-value=4 Score=21.16 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCCCcccccccCCcc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
..+||..+|++...|..|..+++.
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~~ 48 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIAI 48 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCC
Confidence 357899999999999999987653
No 103
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=48.07 E-value=6 Score=20.87 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCCCcccccccCCc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR 39 (64)
..+||..+|++...|..|..+++
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~~ 62 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNEN 62 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35789999999999999988864
No 104
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=44.97 E-value=3.8 Score=21.45 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=18.0
Q ss_pred HHHHHHHhCCCCCcccccccC
Q psy8538 17 KAELANSLGLSERQVRCPHHQ 37 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqN 37 (64)
...+|..+|++..+|..|...
T Consensus 26 ~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 26 LQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 457899999999999999754
No 105
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=44.92 E-value=3.8 Score=21.84 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=18.3
Q ss_pred HHHHHHHHhCCCCCcccccccC
Q psy8538 16 RKAELANSLGLSERQVRCPHHQ 37 (64)
Q Consensus 16 ~r~~La~~l~l~~~qV~vWFqN 37 (64)
....+|..+|+++.+|..|..-
T Consensus 32 s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 32 TICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHHHH
Confidence 4567999999999999999653
No 106
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=44.55 E-value=4 Score=21.22 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=16.8
Q ss_pred HHHHHHHhCCCCCccccccc
Q psy8538 17 KAELANSLGLSERQVRCPHH 36 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFq 36 (64)
..++|..+|++...|..|..
T Consensus 41 ~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 41 KASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 34789999999999999963
No 107
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=43.59 E-value=4.8 Score=20.42 Aligned_cols=23 Identities=17% Similarity=0.145 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCCCcccccccCCc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR 39 (64)
..+||..+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35789999999999999998775
No 108
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=43.01 E-value=4.7 Score=20.82 Aligned_cols=21 Identities=14% Similarity=0.037 Sum_probs=18.8
Q ss_pred HHHHHHHhCCCCCcccccccC
Q psy8538 17 KAELANSLGLSERQVRCPHHQ 37 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqN 37 (64)
..+||+.||++...|-.|..+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 568999999999999999865
No 109
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=42.30 E-value=5.7 Score=19.69 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCCCcccccccCCcc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
..+||..+|++...|..|-.+++.
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~~ 49 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFERR 49 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 357999999999999999887653
No 110
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=41.56 E-value=6.5 Score=15.62 Aligned_cols=14 Identities=21% Similarity=0.050 Sum_probs=10.9
Q ss_pred CCCcccccccCCcc
Q psy8538 27 SERQVRCPHHQLTT 40 (64)
Q Consensus 27 ~~~qV~vWFqNrR~ 40 (64)
+...|.+-+.|||+
T Consensus 2 skkpvpiiycnrrt 15 (21)
T 8tfv_A 2 SKKPVPIIYCNRRT 15 (26)
T ss_dssp CCCCCCCEEEEGGG
T ss_pred CCCcccEEEEcCcc
Confidence 45678888899886
No 111
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=41.09 E-value=6.2 Score=19.63 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=19.5
Q ss_pred HHHHHHhCCCCCcccccccCCc
Q psy8538 18 AELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 18 ~~La~~l~l~~~qV~vWFqNrR 39 (64)
.+||..+|++...|..|-.+++
T Consensus 31 ~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 31 KELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHCcCHHHHHHHHCCCC
Confidence 4789999999999999988765
No 112
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=41.02 E-value=5.1 Score=20.63 Aligned_cols=23 Identities=9% Similarity=0.040 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCCCcccccccCCc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR 39 (64)
..+||..+|++...|..|..+.+
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 35799999999999999998865
No 113
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=41.00 E-value=6.2 Score=19.48 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCCCcccccccCCc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR 39 (64)
..+||..+|++...|..|-.+.+
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 35799999999999999987765
No 114
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=40.18 E-value=12 Score=20.52 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=15.4
Q ss_pred HHHHHHhCCCCCccccc
Q psy8538 18 AELANSLGLSERQVRCP 34 (64)
Q Consensus 18 ~~La~~l~l~~~qV~vW 34 (64)
..+|..+|+++.+|-.|
T Consensus 27 ~~vA~~iGV~~StISR~ 43 (97)
T 1xwr_A 27 EKTAEAVGVDKSQISRW 43 (97)
T ss_dssp HHHHHHHTCCTTTHHHH
T ss_pred HHHHHHhCCCHHHHHHH
Confidence 46899999999999998
No 115
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=39.83 E-value=6.8 Score=22.20 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=17.3
Q ss_pred HHHHHHhCCCCCcccccccC
Q psy8538 18 AELANSLGLSERQVRCPHHQ 37 (64)
Q Consensus 18 ~~La~~l~l~~~qV~vWFqN 37 (64)
.++|..+|++...|..|+..
T Consensus 45 ~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 45 CDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp HHHHHHHTCCSHHHHHHHCC
T ss_pred HHHHHHHCcCHHHHHHHHHH
Confidence 46789999999999999875
No 116
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=39.77 E-value=8.4 Score=19.80 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCCCcccccccCCcc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
..+||..+|++...|..|..+++.
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~~ 43 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRST 43 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 357899999999999999988664
No 117
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=39.75 E-value=6.7 Score=19.90 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=19.8
Q ss_pred HHHHHHhCCCCCcccccccCCcc
Q psy8538 18 AELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 18 ~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
.+||..+|++...|..|..+++.
T Consensus 34 ~~lA~~~gis~~~is~~e~g~~~ 56 (92)
T 1lmb_3 34 ESVADKMGMGQSGVGALFNGINA 56 (92)
T ss_dssp HHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHCcCHHHHHHHHcCCCC
Confidence 57899999999999999887653
No 118
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=39.17 E-value=14 Score=20.14 Aligned_cols=28 Identities=11% Similarity=0.068 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCCCCcccccccCCccccc
Q psy8538 16 RKAELANSLGLSERQVRCPHHQLTTVNN 43 (64)
Q Consensus 16 ~r~~La~~l~l~~~qV~vWFqNrR~~~k 43 (64)
-+..++.+.|++..+++..|+.+--++-
T Consensus 47 LK~~I~~k~Gip~~qQrLif~Gk~LkD~ 74 (93)
T 3plu_A 47 FKKVLSLQIGTQPNKIVLQKGGSVLKDH 74 (93)
T ss_dssp HHHHHHHHHTCCGGGEEEEETTEECCTT
T ss_pred HHHHHHHHhCCCHHHEEEEeCCEEccCc
Confidence 4567899999999999999987655543
No 119
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=38.32 E-value=4.5 Score=21.48 Aligned_cols=20 Identities=15% Similarity=0.096 Sum_probs=16.9
Q ss_pred HHHHHHhCCCCCcccccccC
Q psy8538 18 AELANSLGLSERQVRCPHHQ 37 (64)
Q Consensus 18 ~~La~~l~l~~~qV~vWFqN 37 (64)
.++|..+|++...|..|+..
T Consensus 37 ~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 37 CVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp HHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHH
Confidence 46789999999999999764
No 120
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=37.60 E-value=5.3 Score=20.05 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCCCcccccccCCc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR 39 (64)
..+||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 35789999999999999988754
No 121
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=37.04 E-value=5.4 Score=20.45 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=16.5
Q ss_pred HHHHHHHhCCCCCccccccc
Q psy8538 17 KAELANSLGLSERQVRCPHH 36 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFq 36 (64)
..++|+.+|++...|..|-+
T Consensus 8 i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWER 27 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 34689999999999998855
No 122
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=36.88 E-value=8.1 Score=19.18 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCCCcccccccCCc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR 39 (64)
..+||..+|++...|..|-.+++
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~~ 49 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNSR 49 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 34789999999999999988764
No 123
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=36.16 E-value=53 Score=19.39 Aligned_cols=30 Identities=7% Similarity=-0.115 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHhCC-CCCcccccccCCc
Q psy8538 10 RYITIRRKAELANSLGL-SERQVRCPHHQLT 39 (64)
Q Consensus 10 ~~p~~~~r~~La~~l~l-~~~qV~vWFqNrR 39 (64)
..++..+...|...+.= ..-.|+.||=||+
T Consensus 57 g~Lt~~ei~~l~~~i~~~~~~~ip~w~lNr~ 87 (152)
T 3iz6_M 57 GELSAEEMDRLMAVVHNPRQFKVPDWFLNRK 87 (152)
T ss_dssp TTSCHHHHHHHHHHHHSCSSCCCCCCSCSCC
T ss_pred CcCCHHHHHHHHHHHHhhcccCcchhhhhhh
Confidence 35777777777777642 2455899999997
No 124
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=35.52 E-value=5.7 Score=21.63 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=18.0
Q ss_pred HHHHHHHhCCCCCcccccccC
Q psy8538 17 KAELANSLGLSERQVRCPHHQ 37 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqN 37 (64)
..++|..+|++...|..|+..
T Consensus 25 ~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 25 LHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp HHHHHHHHTCCHHHHHHHHHS
T ss_pred HHHHHHHHCcCHHHHHHHHHc
Confidence 356799999999999999865
No 125
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=34.80 E-value=9.4 Score=19.45 Aligned_cols=20 Identities=10% Similarity=0.258 Sum_probs=17.5
Q ss_pred HHHHHHhCCCCCcccccccC
Q psy8538 18 AELANSLGLSERQVRCPHHQ 37 (64)
Q Consensus 18 ~~La~~l~l~~~qV~vWFqN 37 (64)
.+||..+|++...|..|..+
T Consensus 26 ~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 26 SALSRQFGYAPTTLANALER 45 (74)
T ss_dssp HHHHHHHSSCHHHHHHTTTS
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 46999999999999999764
No 126
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=34.50 E-value=7 Score=18.71 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCCCcccccccCCc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR 39 (64)
...+|..+|++...|..|..+.+
T Consensus 16 ~~~~A~~lgis~~~vs~~~~~~~ 38 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVRAGR 38 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35789999999999999986554
No 127
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=33.83 E-value=4.4 Score=19.14 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=16.7
Q ss_pred HHHHHHhCCCCCcccccccC
Q psy8538 18 AELANSLGLSERQVRCPHHQ 37 (64)
Q Consensus 18 ~~La~~l~l~~~qV~vWFqN 37 (64)
.++|..+|+++..|.....+
T Consensus 17 ~eIA~~l~is~~tV~~~~~~ 36 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMN 36 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 47899999999999887655
No 128
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=33.51 E-value=9.8 Score=19.01 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=18.3
Q ss_pred HHHHHHhCCCCCcccccccC
Q psy8538 18 AELANSLGLSERQVRCPHHQ 37 (64)
Q Consensus 18 ~~La~~l~l~~~qV~vWFqN 37 (64)
.+||..+|++...|..|-.+
T Consensus 27 ~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 27 SELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 47899999999999999888
No 129
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=32.98 E-value=6.2 Score=22.04 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=16.9
Q ss_pred HHHHHHhCCCCCcccccccC
Q psy8538 18 AELANSLGLSERQVRCPHHQ 37 (64)
Q Consensus 18 ~~La~~l~l~~~qV~vWFqN 37 (64)
.++|..+|++...|..|+..
T Consensus 52 ~~iA~~lgis~~TV~rw~~~ 71 (149)
T 1k78_A 52 CDISRQLRVSHGCVSKILGR 71 (149)
T ss_dssp HHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHH
Confidence 46789999999999999763
No 130
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=32.94 E-value=61 Score=18.99 Aligned_cols=30 Identities=3% Similarity=-0.063 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHhCCC-CCcccccccCCc
Q psy8538 10 RYITIRRKAELANSLGLS-ERQVRCPHHQLT 39 (64)
Q Consensus 10 ~~p~~~~r~~La~~l~l~-~~qV~vWFqNrR 39 (64)
..++..+...|...+.=+ .-.|..||=||+
T Consensus 59 g~Lt~~ei~~l~~~i~~~~~~~iP~w~lNR~ 89 (146)
T 3u5c_S 59 GELTQEELERIVQIMQNPTHYKIPAWFLNRQ 89 (146)
T ss_dssp SSCCHHHHHHHHHHHTCTTTTTCCSTTCTBC
T ss_pred ccCCHHHHHHHHHHHHhhcccCccHHHhhhh
Confidence 357777888888777532 345888999987
No 131
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=32.59 E-value=10 Score=19.82 Aligned_cols=23 Identities=9% Similarity=0.036 Sum_probs=19.7
Q ss_pred HHHHHHhCCCCCcccccccCCcc
Q psy8538 18 AELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 18 ~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
.+||..+|++...|..|-.+++.
T Consensus 47 ~elA~~lgvs~~~is~~E~G~~~ 69 (99)
T 2ppx_A 47 EEFSARYHIPLGTLRDWEQGRSE 69 (99)
T ss_dssp HHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHhCcCHHHHHHHHcCCCC
Confidence 46999999999999999887653
No 132
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=30.71 E-value=9.1 Score=20.77 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCCCcccccccC
Q psy8538 17 KAELANSLGLSERQVRCPHHQ 37 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqN 37 (64)
..++|...+|+..+|..|-..
T Consensus 52 ~~e~arry~Is~s~i~~W~r~ 72 (95)
T 2jrt_A 52 EREALDRYSLSEEEFALWRSA 72 (95)
T ss_dssp HHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHH
Confidence 347899999999999999644
No 133
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=30.71 E-value=9 Score=19.50 Aligned_cols=24 Identities=8% Similarity=0.058 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCCCcccccccCCcc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
..+||..+|++...|..|..+++.
T Consensus 29 q~~lA~~~gis~~~is~~e~g~~~ 52 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYESGRAI 52 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 357899999999999999887653
No 134
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=30.33 E-value=11 Score=18.79 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCCCcccccccCCc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR 39 (64)
..+||..+|++...|..|-.+++
T Consensus 30 q~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 30 MVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 34899999999999999988765
No 135
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=30.23 E-value=14 Score=19.71 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=19.8
Q ss_pred HHHHHHhCCCCCcccccccCCcc
Q psy8538 18 AELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 18 ~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
.+||..+|++...|..|-.+++.
T Consensus 38 ~elA~~~gis~~~is~~E~G~~~ 60 (114)
T 3vk0_A 38 EELARQCGLDRTYVSAVERKRWN 60 (114)
T ss_dssp HHHHHHHTCCHHHHHHHTTTCCC
T ss_pred HHHHHHHCcCHHHHHHHHcCCCC
Confidence 47899999999999999887763
No 136
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=29.94 E-value=9.5 Score=18.82 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=15.9
Q ss_pred HHHHHHHhCCCCCccccccc
Q psy8538 17 KAELANSLGLSERQVRCPHH 36 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFq 36 (64)
-.++|..+|++...|..+..
T Consensus 33 ~~eIA~~l~is~~tV~~~~~ 52 (73)
T 1ku3_A 33 LEEVGAYFGVTRERIRQIEN 52 (73)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 35789999999998887643
No 137
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=29.40 E-value=14 Score=19.68 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCCCcccccccCCc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR 39 (64)
..+||..+|++...|..|-.+.+
T Consensus 52 q~elA~~~gis~~~is~~E~G~~ 74 (107)
T 2jvl_A 52 QAELGKEIGETAATVASYERGTA 74 (107)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999988766
No 138
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=29.16 E-value=9.9 Score=18.46 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=16.6
Q ss_pred HHHHHHHhCCCCCcccccccC
Q psy8538 17 KAELANSLGLSERQVRCPHHQ 37 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqN 37 (64)
-.++|..+|+|...|+.+...
T Consensus 28 ~~eIA~~lgis~~tV~~~~~r 48 (68)
T 2p7v_B 28 LEEVGKQFDVTRERIRQIEAK 48 (68)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 357899999999998876543
No 139
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=28.97 E-value=8.3 Score=20.99 Aligned_cols=21 Identities=10% Similarity=0.151 Sum_probs=18.2
Q ss_pred HHHHHhCCCCCcccccccCCc
Q psy8538 19 ELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 19 ~La~~l~l~~~qV~vWFqNrR 39 (64)
++|..+|++...|..|..+..
T Consensus 30 ~~A~~~gvs~stl~~~~~~~~ 50 (131)
T 1hlv_A 30 EIARRFNIPPSTLSTILKNKR 50 (131)
T ss_dssp HHHHHHTCCHHHHHHHHHTHH
T ss_pred HHHHHhCCCHHHHHHHHhchh
Confidence 689999999999999987654
No 140
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=28.75 E-value=11 Score=20.01 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCCCcccccccCCcc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
..+||..+|++...|..|-.+++.
T Consensus 25 q~~lA~~~gis~~~i~~~e~g~~~ 48 (114)
T 3op9_A 25 NHQIAELLNVQTRTVAYYMSGETK 48 (114)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 347899999999999999888653
No 141
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=28.51 E-value=13 Score=19.30 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=18.7
Q ss_pred HHHHHHHhCCCCCcccccccC
Q psy8538 17 KAELANSLGLSERQVRCPHHQ 37 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqN 37 (64)
..+||..+|++...|..|..+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 17 LSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 357999999999999999887
No 142
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=27.83 E-value=13 Score=21.10 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=14.8
Q ss_pred HHHHHHHHhCCCCCcccc
Q psy8538 16 RKAELANSLGLSERQVRC 33 (64)
Q Consensus 16 ~r~~La~~l~l~~~qV~v 33 (64)
...+||.++|||+++|..
T Consensus 94 n~~eLArkYgLSer~I~~ 111 (129)
T 1rr7_A 94 NVSELTTRYGVTFNTVYK 111 (129)
T ss_dssp CHHHHHHHHTCCHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHH
Confidence 356899999999998764
No 143
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=27.66 E-value=3.3 Score=20.60 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=17.9
Q ss_pred HHHHHHHhCCCCCcccccccCCc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR 39 (64)
-.++|..+|++...|..+...=+
T Consensus 34 ~~eIA~~l~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 34 NKSIAYDLDISPRTVEVHRANVM 56 (79)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHH
Confidence 34789999999999988766533
No 144
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=27.31 E-value=14 Score=19.23 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=19.6
Q ss_pred HHHHHHhCCCCCcccccccCCcc
Q psy8538 18 AELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 18 ~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
.+||..+|++...|..|..+.+.
T Consensus 35 ~~lA~~~gis~~~is~~e~g~~~ 57 (104)
T 3cec_A 35 ANFAEILGVSNQTIQEVINGQRS 57 (104)
T ss_dssp HHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHCcCHHHHHHHHcCCcC
Confidence 46899999999999999887653
No 145
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=27.29 E-value=14 Score=19.59 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCCCcccccccCCcc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
..+||..+|++...|..|-.+.+.
T Consensus 27 q~~lA~~~gis~~~is~~e~g~~~ 50 (113)
T 2eby_A 27 INELAELLHVHRNSVSALINNNRK 50 (113)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 357999999999999999887653
No 146
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=27.17 E-value=12 Score=17.81 Aligned_cols=22 Identities=5% Similarity=-0.160 Sum_probs=18.9
Q ss_pred HHHHHHhC--CCCCcccccccCCc
Q psy8538 18 AELANSLG--LSERQVRCPHHQLT 39 (64)
Q Consensus 18 ~~La~~l~--l~~~qV~vWFqNrR 39 (64)
.+||..+| ++...|..|-.+.+
T Consensus 25 ~~lA~~~g~~is~~~i~~~e~g~~ 48 (71)
T 2ewt_A 25 HGVEEKSQGRWKAVVVGSYERGDR 48 (71)
T ss_dssp HHHHHHTTTSSCHHHHHHHHHTCS
T ss_pred HHHHHHHCCcCCHHHHHHHHCCCC
Confidence 57899999 99999999987765
No 147
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=26.81 E-value=11 Score=17.95 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=15.7
Q ss_pred HHHHHHHhCCCCCccccccc
Q psy8538 17 KAELANSLGLSERQVRCPHH 36 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFq 36 (64)
-.++|..+|++...|..+..
T Consensus 34 ~~eIA~~lgis~~tv~~~~~ 53 (70)
T 2o8x_A 34 YADAAAVCGCPVGTIRSRVA 53 (70)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 35789999999988887644
No 148
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=26.58 E-value=13 Score=20.05 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=16.5
Q ss_pred HHHHHHhCCCCCcccccccC
Q psy8538 18 AELANSLGLSERQVRCPHHQ 37 (64)
Q Consensus 18 ~~La~~l~l~~~qV~vWFqN 37 (64)
.++|+.+|++...|..|-..
T Consensus 6 ~e~A~~~gvs~~tLR~ye~~ 25 (109)
T 1r8d_A 6 KQVAEISGVSIRTLHHYDNI 25 (109)
T ss_dssp HHHHHHHSCCHHHHHHHHHT
T ss_pred HHHHHHHCcCHHHHHHHHHC
Confidence 46899999999999988544
No 149
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=26.40 E-value=11 Score=20.35 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=16.2
Q ss_pred HHHHHHhCCCCCcccccccC
Q psy8538 18 AELANSLGLSERQVRCPHHQ 37 (64)
Q Consensus 18 ~~La~~l~l~~~qV~vWFqN 37 (64)
.++|+.+|++...|..|=..
T Consensus 5 ~e~A~~~gvs~~tLR~ye~~ 24 (108)
T 2vz4_A 5 GQVAGFAGVTVRTLHHYDDI 24 (108)
T ss_dssp HHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHC
Confidence 46899999999999888443
No 150
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=26.30 E-value=52 Score=19.08 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHHhCCCCC
Q psy8538 12 ITIRRKAELANSLGLSER 29 (64)
Q Consensus 12 p~~~~r~~La~~l~l~~~ 29 (64)
.+...|.+||.+||++..
T Consensus 81 sSl~~RkeLA~eL~~~~~ 98 (130)
T 2gqb_A 81 SSLSARKELAKELGYSGD 98 (130)
T ss_dssp CSHHHHHHHHHHHTCCCS
T ss_pred ccHHHHHHHHHHhCCCCC
Confidence 677899999999998854
No 151
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=25.86 E-value=15 Score=18.57 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=19.2
Q ss_pred HHHHHHhCCCCCcccccccCCc
Q psy8538 18 AELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 18 ~~La~~l~l~~~qV~vWFqNrR 39 (64)
.+||..+|++...|..|-.+.+
T Consensus 31 ~elA~~~gis~~~is~~E~G~~ 52 (86)
T 3eus_A 31 ADLAERLDKPQSFVAKVETRER 52 (86)
T ss_dssp HHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHhCcCHHHHHHHHCCCC
Confidence 4789999999999999987765
No 152
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=25.77 E-value=16 Score=19.25 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCCCcccccccCCc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR 39 (64)
..+||..+|++...|..|-.+++
T Consensus 44 q~elA~~~gis~~~is~iE~G~~ 66 (99)
T 3g5g_A 44 QEDLAYKSNLDRTYISGIERNSR 66 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 35789999999999999988765
No 153
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=25.24 E-value=11 Score=19.04 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=19.0
Q ss_pred HHHHHHHhCCCCCcccccccCCc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR 39 (64)
...+|..+|++...|-.|-...|
T Consensus 16 q~~~A~~Lgvsq~aVS~~~~~~r 38 (65)
T 2cw1_A 16 QEYAARALGLSQKLIEEVLKRGL 38 (65)
T ss_dssp HHHHHHHSSSCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCHHHHHHHHHhcC
Confidence 45789999999999999986554
No 154
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=24.74 E-value=15 Score=19.89 Aligned_cols=23 Identities=4% Similarity=0.085 Sum_probs=19.9
Q ss_pred HHHHHHhCCCCCcccccccCCcc
Q psy8538 18 AELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 18 ~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
.+||..+|++...|..|-.+.+.
T Consensus 29 ~~lA~~~gis~~~is~~E~g~~~ 51 (126)
T 3ivp_A 29 EQVGAMIEIDPRYLTNIENKGQH 51 (126)
T ss_dssp HHHHHHHTCCHHHHHHHHHSCCC
T ss_pred HHHHHHhCcCHHHHHHHHCCCCC
Confidence 47899999999999999888753
No 155
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=24.74 E-value=8 Score=18.74 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=16.9
Q ss_pred HHHHHHHhCCCCCcccccccC
Q psy8538 17 KAELANSLGLSERQVRCPHHQ 37 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqN 37 (64)
-.++|..+|++...|..+...
T Consensus 29 ~~eIA~~l~is~~tV~~~~~~ 49 (74)
T 1fse_A 29 TKEIASELFISEKTVRNHISN 49 (74)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 347899999999988887665
No 156
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=24.46 E-value=48 Score=16.27 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=20.7
Q ss_pred HHHHHHHHHhCCCCCcccccccCCcc
Q psy8538 15 RRKAELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 15 ~~r~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
.-+..++..++++..+++..|..+.-
T Consensus 28 ~lK~~i~~~~~ip~~~qrL~~~g~~L 53 (85)
T 3n3k_B 28 NVKAKIQDKEGIPPDQQRLIFAGKQL 53 (85)
T ss_dssp HHHHHHHHHHCCCGGGEEEEETBEEC
T ss_pred HHHHHHHHHHCCCHHHEEEEECCeEC
Confidence 34567899999999999999976543
No 157
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=24.42 E-value=15 Score=21.20 Aligned_cols=23 Identities=17% Similarity=0.210 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCCCcccccccCCc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR 39 (64)
..+||+.+|++...|..|..+.+
T Consensus 23 q~elA~~~Gis~~~i~~~e~g~~ 45 (189)
T 2fjr_A 23 KIQLANHFDIASSSLSNRYTRGA 45 (189)
T ss_dssp HHHHHHHTTCCHHHHHHHHHSSS
T ss_pred HHHHHHHhCcCHHHHHHHHhCCC
Confidence 56899999999999999988655
No 158
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=24.37 E-value=16 Score=19.36 Aligned_cols=22 Identities=18% Similarity=0.052 Sum_probs=19.4
Q ss_pred HHHHHHhCCCCCcccccccCCc
Q psy8538 18 AELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 18 ~~La~~l~l~~~qV~vWFqNrR 39 (64)
.+||..+|++...|..|-.+++
T Consensus 45 ~~lA~~~gis~~~is~~E~g~~ 66 (117)
T 3f52_A 45 RELAEASRVSPGYLSELERGRK 66 (117)
T ss_dssp HHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHCcCHHHHHHHHCCCC
Confidence 4789999999999999988776
No 159
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=24.01 E-value=14 Score=19.90 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCCCcccccccCCc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR 39 (64)
..+||..+|++...|..|-.+++
T Consensus 39 q~elA~~~gis~~~is~~E~G~~ 61 (111)
T 3mlf_A 39 QKELGDLFKVSSRTIQNMEKDST 61 (111)
T ss_dssp HHHHHHHHTSCHHHHHHHHHCCT
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 34789999999999999988765
No 160
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=23.77 E-value=37 Score=16.72 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=18.2
Q ss_pred HHHHHHhCCCCCcccccccCCc
Q psy8538 18 AELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 18 ~~La~~l~l~~~qV~vWFqNrR 39 (64)
..||+.+|++...|-.++-++.
T Consensus 4 ~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 4 DEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 4688999999998888887765
No 161
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=23.75 E-value=25 Score=17.53 Aligned_cols=24 Identities=13% Similarity=-0.000 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCCCcccccccCCcc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
...||+.+|++...|-.++-++..
T Consensus 12 ~~diA~~aGVS~sTVSr~ln~~~~ 35 (67)
T 2l8n_A 12 MKDVALKAKVSTATVSRALMNPDK 35 (67)
T ss_dssp HHHHHHHTTCCHHHHHHTTTCCCC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 467999999999999999988754
No 162
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=23.10 E-value=19 Score=18.43 Aligned_cols=16 Identities=19% Similarity=0.501 Sum_probs=12.5
Q ss_pred HHHHHHhCCCCCcccc
Q psy8538 18 AELANSLGLSERQVRC 33 (64)
Q Consensus 18 ~~La~~l~l~~~qV~v 33 (64)
.+||+.+|++...|+.
T Consensus 35 ~eLA~~Lgvs~~tV~~ 50 (77)
T 1qgp_A 35 HDLSGKLGTPKKEINR 50 (77)
T ss_dssp HHHHHHHCCCHHHHHH
T ss_pred HHHHHHHCcCHHHHHH
Confidence 5789999998876643
No 163
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=22.99 E-value=19 Score=18.82 Aligned_cols=17 Identities=18% Similarity=0.464 Sum_probs=13.1
Q ss_pred HHHHHHHhCCCCCcccc
Q psy8538 17 KAELANSLGLSERQVRC 33 (64)
Q Consensus 17 r~~La~~l~l~~~qV~v 33 (64)
..+||+.+|++.+.|+.
T Consensus 30 ~~eLA~~Lgvsr~tV~~ 46 (81)
T 1qbj_A 30 AHDLSGKLGTPKKEINR 46 (81)
T ss_dssp HHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHCcCHHHHHH
Confidence 34789999999876654
No 164
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=22.78 E-value=9.5 Score=20.53 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=16.7
Q ss_pred HHHHHHhCCCCCcccccccC
Q psy8538 18 AELANSLGLSERQVRCPHHQ 37 (64)
Q Consensus 18 ~~La~~l~l~~~qV~vWFqN 37 (64)
.++|..+|+++..|+.+..+
T Consensus 53 ~EIA~~L~iS~~TV~~~l~r 72 (99)
T 1p4w_A 53 TEIAKKLNRSIKTISSQKKS 72 (99)
T ss_dssp HHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHH
Confidence 57899999999999887665
No 165
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=22.73 E-value=34 Score=20.48 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=20.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCCccc
Q psy8538 9 SRYITIRRKAELANSLGLSERQVR 32 (64)
Q Consensus 9 ~~~p~~~~r~~La~~l~l~~~qV~ 32 (64)
..|++......+|..|+++..+|.
T Consensus 38 ~G~l~~~~~~~iA~~l~l~~~~V~ 61 (181)
T 3i9v_2 38 EGWIRPERIEEIARLVGTTPTEVM 61 (181)
T ss_dssp HSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred hCCCCHHHHHHHHHHhCcCHHHHH
Confidence 368999999999999999998873
No 166
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=22.72 E-value=20 Score=19.26 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCCCcccccccCCcc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLTT 40 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR~ 40 (64)
..+||..+|++...|..|-.+++.
T Consensus 30 q~eLA~~lGis~~~is~ie~G~~~ 53 (104)
T 3trb_A 30 ANQLAKHLAIPTNRVTAILNGARS 53 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 346899999999999999887764
No 167
>1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=22.66 E-value=25 Score=19.74 Aligned_cols=28 Identities=18% Similarity=0.103 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHhCCCCCcccccccC
Q psy8538 10 RYITIRRKAELANSLGLSERQVRCPHHQ 37 (64)
Q Consensus 10 ~~p~~~~r~~La~~l~l~~~qV~vWFqN 37 (64)
..++..+-..|...+..+...|+.|+..
T Consensus 6 s~lspe~l~~L~~~t~fs~~elk~~y~~ 33 (118)
T 1tuz_A 6 GLISPSDFAQLQKYMEYSTKKVSDVLKL 33 (118)
T ss_dssp SCSCHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred CcCCHHHHHHHHHHcccCHHHHHHHHHH
Confidence 3578888899999999999999999554
No 168
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=22.58 E-value=15 Score=18.88 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=16.7
Q ss_pred HHHHHHHhCCCCCcccccccC
Q psy8538 17 KAELANSLGLSERQVRCPHHQ 37 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqN 37 (64)
-.++|..+|++...|+.+...
T Consensus 56 ~~eIA~~lgis~~tV~~~l~r 76 (92)
T 3hug_A 56 TAQIATDLGIAEGTVKSRLHY 76 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 457899999999998876543
No 169
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=22.37 E-value=9.6 Score=19.45 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCCCcccccccC
Q psy8538 17 KAELANSLGLSERQVRCPHHQ 37 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqN 37 (64)
-.++|..+|++...|+....+
T Consensus 39 ~~eIA~~l~is~~tV~~~l~r 59 (82)
T 1je8_A 39 NKMIARRLDITESTVKVHVKH 59 (82)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 457899999999999887665
No 170
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=22.23 E-value=12 Score=19.45 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=17.9
Q ss_pred HHHHHHHhCCCCCcccccccCC
Q psy8538 17 KAELANSLGLSERQVRCPHHQL 38 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNr 38 (64)
...||..+|++++.+...|+..
T Consensus 22 ~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 22 LSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHH
Confidence 5578999999999888877653
No 171
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=21.71 E-value=21 Score=21.19 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCCCcccccccCCc
Q psy8538 17 KAELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqNrR 39 (64)
..+||..+|++...|..|..+++
T Consensus 33 ~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 33 QESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp SHHHHHHHTSCHHHHHHHTTTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35789999999999999998765
No 172
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=21.35 E-value=32 Score=23.87 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=20.0
Q ss_pred HHHHHHHHhCCCCCcccccccCCc
Q psy8538 16 RKAELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 16 ~r~~La~~l~l~~~qV~vWFqNrR 39 (64)
-...+|+.+|++..+++.|.-..|
T Consensus 51 l~~~va~~lg~~~~~~RlW~~~~R 74 (530)
T 2ylm_A 51 FVQSLSQTMGFPQDQIRLWPMQAR 74 (530)
T ss_dssp HHHHHHHHHTSCGGGEEEEEEEEC
T ss_pred HHHHHHHHhCcCcccEEEEEEEcC
Confidence 367899999999999999976543
No 173
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=21.33 E-value=17 Score=19.50 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=14.9
Q ss_pred HHHHHHhCCCCCccccc
Q psy8538 18 AELANSLGLSERQVRCP 34 (64)
Q Consensus 18 ~~La~~l~l~~~qV~vW 34 (64)
..+|..+|+++.+|-.|
T Consensus 28 ~~vAe~~GvdeStISR~ 44 (83)
T 1zs4_A 28 EKTAEAVGVDKSQISRW 44 (83)
T ss_dssp HHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhCCCHHHHhhh
Confidence 46799999999999887
No 174
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=21.25 E-value=17 Score=18.57 Aligned_cols=21 Identities=10% Similarity=0.213 Sum_probs=16.9
Q ss_pred HHHHHHHhCCCCCcccccccC
Q psy8538 17 KAELANSLGLSERQVRCPHHQ 37 (64)
Q Consensus 17 r~~La~~l~l~~~qV~vWFqN 37 (64)
-.++|..+|+|...|+.+...
T Consensus 41 ~~EIA~~lgis~~tV~~~~~r 61 (87)
T 1tty_A 41 LEEVGQYFNVTRERIRQIEVK 61 (87)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 357899999999999887554
No 175
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=21.00 E-value=64 Score=15.72 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=21.0
Q ss_pred HHHHHHHHHhCCCCCcccccccCCccc
Q psy8538 15 RRKAELANSLGLSERQVRCPHHQLTTV 41 (64)
Q Consensus 15 ~~r~~La~~l~l~~~qV~vWFqNrR~~ 41 (64)
.-+..++..++++..+++..|..+.-.
T Consensus 28 ~lK~~i~~~~~i~~~~qrL~~~g~~L~ 54 (85)
T 3mtn_B 28 NVKAKIQDKEGIPPDQQRLIFAGKQLE 54 (85)
T ss_dssp HHHHHHHHHHCCCGGGCEEEETTEECC
T ss_pred HHHHHHHHHHCcChHHEEEEECCEECC
Confidence 345678999999999988888775443
No 176
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=20.94 E-value=79 Score=17.64 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=27.4
Q ss_pred hccCC-CCCHHHHHHHHHHhCCCCCcccccccCCcccc
Q psy8538 6 FHYSR-YITIRRKAELANSLGLSERQVRCPHHQLTTVN 42 (64)
Q Consensus 6 F~~~~-~p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~ 42 (64)
|...+ .+-..-....|.+.|++..+|+-+|...|-..
T Consensus 55 fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~ 92 (115)
T 3kyd_D 55 FKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIAD 92 (115)
T ss_dssp EEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCT
T ss_pred EEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCC
Confidence 44333 24555667789999999999999999877544
No 177
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=20.63 E-value=11 Score=19.70 Aligned_cols=20 Identities=20% Similarity=0.301 Sum_probs=16.4
Q ss_pred HHHHHHhCCCCCcccccccC
Q psy8538 18 AELANSLGLSERQVRCPHHQ 37 (64)
Q Consensus 18 ~~La~~l~l~~~qV~vWFqN 37 (64)
.++|..+|++...|+....+
T Consensus 46 ~eIA~~l~is~~tV~~~l~r 65 (95)
T 3c57_A 46 KQIADRMFLAEKTVKNYVSR 65 (95)
T ss_dssp HHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHH
Confidence 57899999999998887654
No 178
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=20.59 E-value=20 Score=20.15 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=16.5
Q ss_pred HHHHHHhCCCCCcccccccC
Q psy8538 18 AELANSLGLSERQVRCPHHQ 37 (64)
Q Consensus 18 ~~La~~l~l~~~qV~vWFqN 37 (64)
.++|+.+|++...|..|=+.
T Consensus 4 ~e~A~~~gvs~~tLR~ye~~ 23 (135)
T 1q06_A 4 SDVAKITGLTSKAIRFYEEK 23 (135)
T ss_dssp HHHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHHHCcCHHHHHHHHHC
Confidence 46899999999999988544
No 179
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=20.46 E-value=91 Score=15.25 Aligned_cols=31 Identities=19% Similarity=0.140 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHhCCCCCcccccccCCcccc
Q psy8538 12 ITIRRKAELANSLGLSERQVRCPHHQLTTVN 42 (64)
Q Consensus 12 p~~~~r~~La~~l~l~~~qV~vWFqNrR~~~ 42 (64)
+-..-....+.+.|++..+++-.|...+-..
T Consensus 23 ~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~ 53 (72)
T 1wm3_A 23 PLSKLMKAYCERQGLSMRQIRFRFDGQPINE 53 (72)
T ss_dssp CTHHHHHHHHHHHTCCTTTCEEEETTEECCT
T ss_pred hHHHHHHHHHHHhCCCcceEEEEECCEEcCC
Confidence 4455566789999999999999998877443
No 180
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=20.46 E-value=50 Score=15.68 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=19.7
Q ss_pred HHHHHHHHHhCCCCCcccccccCCc
Q psy8538 15 RRKAELANSLGLSERQVRCPHHQLT 39 (64)
Q Consensus 15 ~~r~~La~~l~l~~~qV~vWFqNrR 39 (64)
.-+..++..++++...++..|..+.
T Consensus 25 ~lK~~i~~~~~i~~~~q~L~~~g~~ 49 (76)
T 3a9j_A 25 NVKAKIQDKEGIPPDQQRLIFAGKQ 49 (76)
T ss_dssp HHHHHHHHHHCCCGGGEEEEETTEE
T ss_pred HHHHHHHHHHCcCHHHeEEEECCeE
Confidence 3456789999999999888887643
Done!