RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8538
(64 letters)
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A
{Drosophila melanogaster} PDB: 2r5z_A*
Length = 88
Score = 48.7 bits (116), Expect = 8e-10
Identities = 15/28 (53%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH++RY+T RR+ E+A++L L+ERQ++
Sbjct: 46 EFHFNRYLTRRRRIEIAHALSLTERQIK 73
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex,
DNA-binding protein, protein/DNA complex; HET: DNA;
2.35A {Homo sapiens} SCOP: a.4.1.1
Length = 97
Score = 47.6 bits (113), Expect = 3e-09
Identities = 12/28 (42%), Positives = 22/28 (78%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH+++Y++ R+ E+A +L L+E QV+
Sbjct: 52 EFHFNKYLSRARRVEIAATLELNETQVK 79
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA
binding, homeodomain, homeotic proteins, development,
specificity; HET: DNA; 2.40A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 9ant_A*
Length = 81
Score = 47.1 bits (112), Expect = 3e-09
Identities = 14/28 (50%), Positives = 23/28 (82%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH + Y+T RR+ E+A++L L+ERQ++
Sbjct: 38 EFHTNHYLTRRRRIEMAHALSLTERQIK 65
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA
binding protein/DNA), transcription/DNA complex; HET:
DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB:
1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A
1du0_A* 1ztr_A 1enh_A 2p81_A
Length = 61
Score = 45.4 bits (108), Expect = 1e-08
Identities = 13/28 (46%), Positives = 23/28 (82%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EF+ +RY+T RR+ +L++ LGL+E Q++
Sbjct: 21 EFNENRYLTERRRQQLSSELGLNEAQIK 48
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 45.1 bits (107), Expect = 2e-08
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
+F +Y++ + LA L LSERQV+
Sbjct: 25 KFETQKYLSPPERKRLAKMLQLSERQVK 52
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA;
NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A
1hom_A 1ftz_A
Length = 68
Score = 44.7 bits (106), Expect = 2e-08
Identities = 15/28 (53%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH++RY+T RR+ E+A++L L+ERQ++
Sbjct: 20 EFHFNRYLTRRRRIEIAHALSLTERQIK 47
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 44.8 bits (106), Expect = 2e-08
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQV 31
F +Y++ + +LA SLGLS+ QV
Sbjct: 35 RFEKQKYLSTPDRIDLAESLGLSQLQV 61
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain;
protein-DNA complex, transcription/DNA complex; 2.42A
{Mesocricetus auratus}
Length = 63
Score = 43.9 bits (104), Expect = 3e-08
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EF +++YI+ R+ ELA L L+ER ++
Sbjct: 21 EFLFNKYISRPRRVELAVMLNLTERHIK 48
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double
helix, helix-turn-helix; NMR {Drosophila melanogaster}
SCOP: a.4.1.1
Length = 68
Score = 43.9 bits (104), Expect = 4e-08
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
F RY+T R A+L+ L L QV+
Sbjct: 20 HFLQGRYLTAPRLADLSAKLALGTAQVK 47
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding
proteins/DNA), complex, DNA- binding protein, DNA; HET:
DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1
PDB: 1f43_A 1yrn_A*
Length = 61
Score = 43.3 bits (103), Expect = 4e-08
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
F + + + K E+A G++ QVR
Sbjct: 23 VFRRKQSLNSKEKEEVAKKCGITPLQVR 50
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA
complex, HOX hexapeptide, TALE homeodomain, homeodomain
interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB:
1san_A
Length = 77
Score = 43.7 bits (103), Expect = 5e-08
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EF ++ Y+T R+ E+A L L+ERQV+
Sbjct: 31 EFLFNMYLTRDRRYEVARLLNLTERQVK 58
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA
complex, transcription/DNA complex; 2.00A {Drosophila
melanogaster} SCOP: a.4.1.1
Length = 60
Score = 43.1 bits (102), Expect = 7e-08
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EF+ Y++ R+ ELA L L E ++
Sbjct: 19 EFYKENYVSRPRRCELAAQLNLPESTIK 46
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 43.2 bits (102), Expect = 8e-08
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQV 31
F ++Y+ + +AELA SLGL++ QV
Sbjct: 25 RFQKTQYLALPERAELAASLGLTQTQV 51
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 42.5 bits (100), Expect = 1e-07
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
E+ +++IT ++ +++ + LSERQ+
Sbjct: 25 EYAANKFITKDKRRKISAATSLSERQIT 52
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex,
DNA-binding, homeobox, NUC developmental protein; 2.70A
{Drosophila melanogaster}
Length = 93
Score = 42.2 bits (99), Expect = 3e-07
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQV 31
FH +Y+ +A LA L +++ QV
Sbjct: 35 RFHKQKYLASAERAALARGLKMTDAQV 61
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens}
PDB: 2ld5_A*
Length = 73
Score = 41.4 bits (97), Expect = 4e-07
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
E+ +++IT ++ ++ + LSERQV
Sbjct: 25 EYATNKFITKDKRRRISATTNLSERQVT 52
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA
complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Length = 58
Score = 40.7 bits (96), Expect = 5e-07
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQV 31
+F +Y++I +AE ++SL L+E QV
Sbjct: 18 KFRQKQYLSIAERAEFSSSLSLTETQV 44
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription,
transcription facto developmental protein,
transcription regulation, NUC homeobox; 2.6A {Mus
musculus}
Length = 62
Score = 39.6 bits (93), Expect = 1e-06
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQV 31
F +Y+++++ EL++ L LS +QV
Sbjct: 21 RFQKQKYLSLQQMQELSSILNLSYKQV 47
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics,
protein structure initiative, PSI, center for
eukaryotic structural genomics; NMR {Homo sapiens}
Length = 84
Score = 40.2 bits (94), Expect = 2e-06
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQV 31
F +Y+++++ EL+N L LS +QV
Sbjct: 40 RFQRQKYLSLQQMQELSNILNLSYKQV 66
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 69
Score = 39.3 bits (92), Expect = 2e-06
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQV 31
+F + +Y++ +A LA +L L+E QV
Sbjct: 22 KFSHQKYLSAPERAHLAKNLKLTETQV 48
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental
protein, DNA-binding, N gene regulation; 1.54A {Homo
sapiens}
Length = 56
Score = 38.4 bits (90), Expect = 4e-06
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQV 31
F +Y+ +A LA +L +++ QV
Sbjct: 15 RFLRQKYLASAERAALAKALRMTDAQV 41
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus,
transcription-DNA CO; 1.70A {Homo sapiens}
Length = 58
Score = 37.2 bits (87), Expect = 1e-05
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQV 31
F RY++ + +LA+ L L+ QV
Sbjct: 20 RFKQQRYLSAPERDQLASVLKLTSTQV 46
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic
development, complex (homeodomain/DNA); HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P*
1vnd_A 1qry_A
Length = 77
Score = 37.8 bits (88), Expect = 1e-05
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQV 31
F RY++ + LA+ + L+ QV
Sbjct: 27 RFRQQRYLSAPEREHLASLIRLTPTQV 53
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding
protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Length = 68
Score = 35.0 bits (81), Expect = 1e-04
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQV 31
F +Y++ + LA+ + L+ QV
Sbjct: 20 RFKQQKYLSAPEREHLASMIHLTPTQV 46
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU
domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP:
a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A
1oct_C* 1pou_A 1pog_A 1hdp_A
Length = 160
Score = 33.8 bits (77), Expect = 0.001
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
F ++ T +A L + + +R
Sbjct: 119 SFMENQKPTSEDITLIAEQLNMEKEVIR 146
>2d5v_A Hepatocyte nuclear factor 6; transcription factor,
transcription-DNA complex; 2.00A {Rattus norvegicus}
PDB: 1s7e_A
Length = 164
Score = 32.2 bits (72), Expect = 0.004
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
F ++ + + ++ LGL V
Sbjct: 115 IFKENKRPSKELQITISQQLGLELSTVS 142
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein,
KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 76
Score = 31.2 bits (71), Expect = 0.005
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
F +++ L GLS R+VR
Sbjct: 26 SFCRNQFPGQSEVEHLTKVTGLSTREVR 53
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA
complex, SOX; 2.05A {Mus musculus}
Length = 164
Score = 30.8 bits (69), Expect = 0.013
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 1 MDSLEFHYSR--YITIRRKAELANSLGLSERQVR 32
+LE H+ + + LA+SL L + VR
Sbjct: 111 KGALESHFLKCPKPSAHEITGLADSLQLEKEVVR 144
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary,
CPHD, POU domain, transcription factor,
transcription/DNA complex; HET: DNA; 2.30A {Rattus
norvegicus} SCOP: a.4.1.1 a.35.1.1
Length = 146
Score = 29.6 bits (66), Expect = 0.033
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 2 DSLEFHYSR--YITIRRKAELANSLGLSERQVR 32
D+LE H+ + + +A L L + VR
Sbjct: 100 DALERHFGEHSKPSSQEIMRMAEELNLEKEVVR 132
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding
domain, transcription, structural genomics, NPPSFA; NMR
{Mus musculus} SCOP: a.4.1.1
Length = 72
Score = 28.2 bits (63), Expect = 0.064
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 4 LEFHY---SRYITIRRKAELANSLGLSERQVRC 33
LE + ++Y +R L+ L S R+++C
Sbjct: 23 LEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQC 55
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain,
transcription factor, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 89
Score = 27.7 bits (61), Expect = 0.12
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
F S +T L L+ R++
Sbjct: 29 SFLNSSVLTDEELNRLRAQTKLTRREID 56
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 89
Score = 27.3 bits (60), Expect = 0.20
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
F S + T L LS R++
Sbjct: 31 SFLKSSFPTQAELDRLRVETKLSRREID 58
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex,
helix-turn-helix (HTH), DNA-binding, homeobox, nucleus,
transcription regulation; 2.51A {Homo sapiens}
Length = 151
Score = 27.3 bits (60), Expect = 0.27
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 1 MDSLEFHYSR--YITIRRKAELANSLGLSERQVR 32
+++L ++ + T + E+A L VR
Sbjct: 105 IEALNAYFEKNPLPTGQEITEMAKELNYDREVVR 138
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 64
Score = 25.9 bits (57), Expect = 0.39
Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 4 LEFHY---SRYITIRRKAELANSLGLSERQVRC 33
LE + +++ +R L+ L R ++
Sbjct: 15 LEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQR 47
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 25.8 bits (57), Expect = 0.47
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQV 31
F + Y +L+N L L R +
Sbjct: 25 FFDANAYPKDDEFEQLSNLLNLPTRVI 51
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 80
Score = 25.9 bits (57), Expect = 0.52
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
++ T + +A+ +GL +R V+
Sbjct: 35 KYLLDSNPTRKMLDHIAHEVGLKKRVVQ 62
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor,
homeodomain, domain swapping, structural oxford protein
production facility, OPPF; 2.70A {Homo sapiens}
Length = 66
Score = 25.1 bits (55), Expect = 0.72
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 6 FHYSRYITIRRKAELANSLGLSERQVR 32
F S++ L GL+ +++
Sbjct: 23 FLQSQFPDDAEVYRLIEVTGLARSEIK 49
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Length = 200
Score = 25.8 bits (56), Expect = 0.90
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 14 IRRKAELANSLGLSERQVR 32
+ RK ++ L L E VR
Sbjct: 31 LGRKQ-ISERLELGEGSVR 48
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 25.2 bits (55), Expect = 0.96
Identities = 3/28 (10%), Positives = 9/28 (32%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
F + L + ++ R++
Sbjct: 25 SFAQNPLPLDEELDRLRSETKMTRREID 52
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 73
Score = 24.3 bits (53), Expect = 1.7
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 8 YSRYITIRRKAELANSLGLSERQVR 32
+++ +A GL+E Q +
Sbjct: 24 VNKHPDPTTLCLIAAEAGLTEEQTQ 48
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription
factor DNA complex, pore, stem cells; HET: DNA; 2.80A
{Mus musculus} PDB: 1ocp_A
Length = 155
Score = 24.7 bits (53), Expect = 2.0
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 2 DSLEFHYSR--YITIRRKAELANSLGLSERQVR 32
SLE + + ++++ +AN LGL + VR
Sbjct: 109 WSLETMFLKSPKPSLQQITHIANQLGLEKDVVR 141
>2hq2_A Putative heme/hemoglobin transport protein; heme oxygenase,
structural repeat; HET: HEM; 1.45A {Escherichia coli}
SCOP: e.62.1.1 PDB: 1u9t_A
Length = 354
Score = 24.9 bits (54), Expect = 2.1
Identities = 7/44 (15%), Positives = 18/44 (40%), Gaps = 9/44 (20%)
Query: 2 DSLEFHYSRYITIR------RKAELANSLGLSERQV---RCPHH 36
HY+R++ ++ ++A + + E ++ R H
Sbjct: 10 HGSMNHYTRWLELKEQNPGKYARDIAGLMNIREAELAFARVTHD 53
>2w48_A Sorbitol operon regulator; SORC, activator, repressor,
DNA-binding, transcription, transcription regulator,
transcription regulation; 3.20A {Klebsiella pneumoniae}
Length = 315
Score = 24.8 bits (54), Expect = 2.5
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 18 AELANSLGLSERQVR 32
A++A LG+ +
Sbjct: 25 AQIARELGIYRTTIS 39
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 23.8 bits (52), Expect = 2.9
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
F + + + E+A+ GL ++ ++
Sbjct: 25 YFDINNSPSEEQIKEMADKSGLPQKVIK 52
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing
proteins); PSI-2, midwest center for structural
genomics; 1.65A {Chromobacterium violaceum}
Length = 113
Score = 24.1 bits (53), Expect = 3.2
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 4 LEFHYSRYITIRRKAELANSLGLSERQ 30
+E + ++ ++A +G+S RQ
Sbjct: 16 MEANIEEPLST---DDIAYYVGVSRRQ 39
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding
protein, homeodomain, LIM domain; NMR {Rattus
norvegicus} SCOP: a.4.1.1
Length = 66
Score = 23.5 bits (51), Expect = 3.8
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 6 FHYSRYITIRRKAELANSLGLSERQVR 32
+ + K +L GLS R +R
Sbjct: 22 YAANPRPDALMKEQLVEMTGLSPRVIR 48
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria
phage MU} SCOP: a.4.1.14
Length = 129
Score = 23.8 bits (51), Expect = 5.1
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 6/29 (20%)
Query: 10 RYITIRRK------AELANSLGLSERQVR 32
R + I +EL G++ V
Sbjct: 82 RDLRIWNDFNGRNVSELTTRYGVTFNTVY 110
>3sqn_A Conserved domain protein; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, MGA family;
2.31A {Enterococcus faecalis}
Length = 485
Score = 23.7 bits (51), Expect = 5.5
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 3/24 (12%)
Query: 9 SRYITIRRKAELANSLGLSERQVR 32
+T + LA + +ER V
Sbjct: 30 VPQLTAK---RLAAQIQTTERTVF 50
>3d06_A Cellular tumor antigen P53; mutant protein, loop-sheet-helix motif,
acetylation, activator, alternative splicing,
anti-oncogene, apoptosis; 1.20A {Homo sapiens} PDB:
3d05_A 3d07_A 2ac0_A 2ady_A 2ahi_A 2ata_A 2ybg_A 3igl_A*
3kz8_A* 2ocj_A 1tup_A* 1tsr_A 3d08_A 3d0a_A* 3igk_A*
2xwr_A 2fej_A 2h1l_M 1ycs_A 3d09_A ...
Length = 200
Score = 23.4 bits (50), Expect = 6.2
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 32 RCPHHQLTTVNNNTAIIVSFLEKVH 56
RCPHH+ + ++ A +
Sbjct: 82 RCPHHERCSDSDGLAPPQHLIRVEG 106
>2o0m_A Transcriptional regulator, SORC family; structural genomics,
protein structure initiative, midwest center for
structural genomics, MCSG; 1.60A {Enterococcus
faecalis} SCOP: c.124.1.8
Length = 345
Score = 23.3 bits (50), Expect = 6.5
Identities = 7/26 (26%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 7 HYSRYITIRRKAELANSLGLSERQVR 32
++ + I R L+ ++G++ER +R
Sbjct: 30 YWMQPIGRR---SLSETMGITERVLR 52
>3q01_A Cellular tumor antigen P53; beta sandwich, multidomain,
oligomerization, TP53, TUMO suppressor, dimer, DNA
binding, antitumor protein; 2.10A {Homo sapiens} PDB:
3q05_A* 3ts8_A 3q06_A* 1a1u_A
Length = 233
Score = 23.1 bits (49), Expect = 9.5
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 32 RCPHHQLTTVNNNTAIIVSFLEKVH 56
RCPHH+ ++ ++ A +
Sbjct: 82 RCPHHERSSDSDGLAPPQHLIRVEG 106
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.131 0.375
Gapped
Lambda K H
0.267 0.0592 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 942,812
Number of extensions: 38609
Number of successful extensions: 162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 52
Length of query: 64
Length of database: 6,701,793
Length adjustment: 35
Effective length of query: 29
Effective length of database: 5,724,558
Effective search space: 166012182
Effective search space used: 166012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)