RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8538
(64 letters)
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 35.1 bits (81), Expect = 3e-05
Identities = 15/28 (53%), Positives = 25/28 (89%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH++RY+T RR+ E+A++L L+ERQ++
Sbjct: 15 EFHFNRYLTRRRRIEIAHALSLTERQIK 42
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 34.7 bits (80), Expect = 4e-05
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 7 HYSRYITIRRKAELANSLGLSERQVR 32
+++ +R L+ L R ++
Sbjct: 14 AITKHPDEKRLEGLSKQLDWDVRSIQ 39
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 35.2 bits (81), Expect = 4e-05
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EF + Y + + LA + L E +++
Sbjct: 19 EFERTHYPDVFARERLAAKIDLPEARIQ 46
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 34.4 bits (79), Expect = 8e-05
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EF ++ Y+T R+ E+A L L+ERQV+
Sbjct: 31 EFLFNMYLTRDRRYEVARLLNLTERQVK 58
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 33.6 bits (77), Expect = 1e-04
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 7 HYSRYITIRRKAELANSLGLSERQVRC 33
++Y +R L+ L S R+++C
Sbjct: 22 SVTKYPDEKRLKGLSKQLDWSVRKIQC 48
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 33.3 bits (76), Expect = 1e-04
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
F ++ + + ++ LGL V
Sbjct: 16 IFKENKRPSKELQITISQQLGLELSTVS 43
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 33.2 bits (76), Expect = 2e-04
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
+ Y T K ++A L+ QV
Sbjct: 23 QHIGHPYPTEDEKKQIAAQTNLTLLQVN 50
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 32.1 bits (73), Expect = 5e-04
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
+F +Y++ + LA L LSERQV+
Sbjct: 18 KFETQKYLSPPERKRLAKMLQLSERQVK 45
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 31.8 bits (72), Expect = 6e-04
Identities = 13/28 (46%), Positives = 23/28 (82%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EF+ +RY+T RR+ +L++ LGL+E Q++
Sbjct: 17 EFNENRYLTERRRQQLSSELGLNEAQIK 44
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 31.4 bits (71), Expect = 8e-04
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
E+ +++IT ++ +++ + LSERQ+
Sbjct: 19 EYAANKFITKDKRRKISAATSLSERQIT 46
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 30.6 bits (69), Expect = 0.002
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
+ + K +L GLS R +R
Sbjct: 21 CYAANPRPDALMKEQLVEMTGLSPRVIR 48
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 30.3 bits (68), Expect = 0.002
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
F + + +A L L + VR
Sbjct: 17 HFGEHSKPSSQEIMRMAEELNLEKEVVR 44
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 30.3 bits (68), Expect = 0.003
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
+ Y + K ELA G++ QV
Sbjct: 22 SHLSNPYPSEEAKEELAKKCGITVSQVS 49
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 29.0 bits (65), Expect = 0.008
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 11 YITIRRKAELANSLGLSERQVR 32
Y+ + L + LS Q++
Sbjct: 25 YLDTKGLENLMKNTSLSRIQIK 46
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 29.6 bits (66), Expect = 0.009
Identities = 12/28 (42%), Positives = 22/28 (78%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EFH+++Y++ R+ E+A +L L+E QV+
Sbjct: 45 EFHFNKYLSRARRVEIAATLELNETQVK 72
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 28.3 bits (63), Expect = 0.012
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
F + + + K E+A G++ QVR
Sbjct: 15 VFRRKQSLNSKEKEEVAKKCGITPLQVR 42
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 28.9 bits (64), Expect = 0.016
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVRCPHHQLTTVN 42
F+ ++Y ++ E+AN+ ++ L V
Sbjct: 18 YFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVT 55
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 28.3 bits (63), Expect = 0.018
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
F ++Y I + ELA L+E +++
Sbjct: 20 AFERTQYPDIYTREELAQRTNLTEARIQ 47
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 28.0 bits (62), Expect = 0.023
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQV 31
F ++ T +A L + + +
Sbjct: 16 SFMENQKPTSEDITLIAEQLNMEKEVI 42
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 27.6 bits (61), Expect = 0.030
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
F +Y++ + LA+ + L+ QV+
Sbjct: 20 RFKQQKYLSAPEREHLASMIHLTPTQVK 47
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 27.3 bits (60), Expect = 0.057
Identities = 1/27 (3%), Positives = 7/27 (25%)
Query: 6 FHYSRYITIRRKAELANSLGLSERQVR 32
+ + G+ + ++
Sbjct: 40 GWRIQKHDDVAVEQFCAETGVRRQVLK 66
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 26.4 bits (58), Expect = 0.072
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
+F +Y++I +AE ++SL L+E QV+
Sbjct: 18 KFRQKQYLSIAERAEFSSSLSLTETQVK 45
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 26.5 bits (58), Expect = 0.078
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
F +RY + + E+A L+E +VR
Sbjct: 19 TFQRNRYPDMSTREEIAVWTNLTEARVR 46
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 26.4 bits (58), Expect = 0.087
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
EF+ Y++ R+ ELA L L E ++
Sbjct: 17 EFYKENYVSRPRRCELAAQLNLPESTIK 44
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 26.4 bits (58), Expect = 0.11
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
F RY+T R A+L+ L L QV+
Sbjct: 19 HFLQGRYLTAPRLADLSAKLALGTAQVK 46
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 26.1 bits (57), Expect = 0.14
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 7 HYSRYITIRRKAELANSLGLSERQVR 32
+++ +A GL+E Q +
Sbjct: 22 KVNKHPDPTTLCLIAAEAGLTEEQTQ 47
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 24.6 bits (53), Expect = 0.47
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQV 31
F RY++ + LA+ + L+ QV
Sbjct: 27 RFRQQRYLSAPEREHLASLIRLTPTQV 53
>d2hq2a1 e.62.1.1 (A:1-337) Heme oxygenase ChuS {Escherichia coli
O157:H7 [TaxId: 83334]}
Length = 337
Score = 25.1 bits (55), Expect = 0.49
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 9/39 (23%)
Query: 7 HYSRYITIR------RKAELANSLGLSERQV---RCPHH 36
HY+R++ ++ ++A + + E ++ R H
Sbjct: 3 HYTRWLELKEQNPGKYARDIAGLMNIREAELAFARVTHD 41
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 24.6 bits (53), Expect = 0.49
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
F ++++ +AN LGL + VR
Sbjct: 26 MFLKCPKPSLQQITHIANQLGLEKDVVR 53
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 24.3 bits (52), Expect = 0.70
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 1 MDSLEFHYSRYITIRRKAELANSLGLSERQV 31
+ S Y L+ L L + +
Sbjct: 22 LQSFIHDVGLYPDQEAIHTLSAQLDLPKHTI 52
>d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 69
Score = 22.7 bits (49), Expect = 3.0
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 20 LANSLGLSERQVR 32
++ L L E VR
Sbjct: 23 ISERLELGEGSVR 35
>d2j0pa1 e.62.1.1 (A:4-341) Hemin transport protein HemS {Yersinia
enterocolitica [TaxId: 630]}
Length = 338
Score = 22.4 bits (48), Expect = 4.5
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 9/38 (23%)
Query: 8 YSRYITIR------RKAELANSLGLSERQV---RCPHH 36
Y +Y+ + +LA +G+SE ++ R H
Sbjct: 3 YEQYLQAKADNPGKYARDLATLMGISEAELTHSRVSHD 40
>d2ac0a1 b.2.5.2 (A:96-289) p53 tumor suppressor, DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 194
Score = 22.4 bits (48), Expect = 5.4
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 32 RCPHHQLTTVNNNTAIIVSFL 52
RCPHH+ + ++ A +
Sbjct: 80 RCPHHERCSDSDGLAPPQHLI 100
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 22.2 bits (47), Expect = 6.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 15 RRKAELANSLGLSERQVRCPH 35
+R E+A LGL+E R P
Sbjct: 118 QRVREVAELLGLTELLNRKPR 138
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 21.3 bits (44), Expect = 8.9
Identities = 3/28 (10%), Positives = 8/28 (28%)
Query: 5 EFHYSRYITIRRKAELANSLGLSERQVR 32
+ + + + L +E R
Sbjct: 15 AYERQKNPSKEERETLVEECNRAECIQR 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.131 0.375
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 224,288
Number of extensions: 7054
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 37
Length of query: 64
Length of database: 2,407,596
Length adjustment: 33
Effective length of query: 31
Effective length of database: 1,954,506
Effective search space: 60589686
Effective search space used: 60589686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)