BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8542
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TAF|A Chain A, Drosophila Tbp Associated Factors Dtafii42DTAFII62
HETEROTETRAMER
Length = 68
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 51/61 (83%)
Query: 63 RDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKL 122
+DAQVI+++ +E ++ Y+PR V Q+LEF Y T+IL+D++VYANHA+KKT+D++D++L
Sbjct: 2 KDAQVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRL 61
Query: 123 A 123
A
Sbjct: 62 A 62
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 40/50 (80%)
Query: 14 PRDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAR 63
P+DAQVI+++ +E ++ Y+PR V Q+LEF Y T+IL+D++VYANHAR
Sbjct: 1 PKDAQVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHAR 50
>pdb|1KU5|A Chain A, Crystal Structure Of Recombinant Histone Hpha From
Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
pdb|1KU5|B Chain B, Crystal Structure Of Recombinant Histone Hpha From
Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
Length = 70
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 70 NMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126
+ ++AG + + + + E++ Y I + + +A HA +KTV VEDIKLAI +
Sbjct: 14 RLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70
>pdb|1ID3|B Chain B, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|F Chain F, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 102
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K +++ + ++ +++ DS Y HAK+KTV D+ A+ Q
Sbjct: 34 IRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93
>pdb|3QBZ|A Chain A, Crystal Structure Of The Rad53-recognition Domain Of
Saccharomyces Cerevisiae Dbf4
Length = 160
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 53 EDSRVYANHARDAQVIVNMFQEAGIKNYDPRCV-QQMLEFVNNYTTTILEDSRVYAN 108
E R AR + V + + G+KN +PR +++LE+ N+ + DSR+Y +
Sbjct: 12 EKKRARIERARSIEGAVQVSKGTGLKNVEPRVTPKELLEWQTNWKKIMKRDSRIYFD 68
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 27 AGIKNYDPRCV-QQMLEFVNNYTTTILEDSRVYANHARDAQV 67
G+KN +PR +++LE+ N+ + DSR+Y + D ++
Sbjct: 34 TGLKNVEPRVTPKELLEWQTNWKKIMKRDSRIYFDITDDVEM 75
>pdb|3ZEF|B Chain B, Crystal Structure Of Prp8:aar2 Complex: Second Crystal
Form At 3.1 Angstrom Resolution
pdb|3ZEF|E Chain E, Crystal Structure Of Prp8:aar2 Complex: Second Crystal
Form At 3.1 Angstrom Resolution
Length = 1531
Score = 32.7 bits (73), Expect = 0.11, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 33/66 (50%)
Query: 75 AGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQLSGSFAK 134
AG+ + D + + + ++ + L+ RV+A +A K+ ++ + +L GS+ +
Sbjct: 545 AGMTHEDEKLIPTIFRYITTWENEFLDSQRVWAEYATKRQEAIQQNRRLAFEELEGSWDR 604
Query: 135 PPPRES 140
PR S
Sbjct: 605 GIPRIS 610
>pdb|4I43|B Chain B, Crystal Structure Of Prp8:aar2 Complex
Length = 1564
Score = 32.7 bits (73), Expect = 0.11, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 33/66 (50%)
Query: 75 AGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQLSGSFAK 134
AG+ + D + + + ++ + L+ RV+A +A K+ ++ + +L GS+ +
Sbjct: 578 AGMTHEDEKLIPTIFRYITTWENEFLDSQRVWAEYATKRQEAIQQNRRLAFEELEGSWDR 637
Query: 135 PPPRES 140
PR S
Sbjct: 638 GIPRIS 643
>pdb|2LY8|A Chain A, The Budding Yeast Chaperone Scm3 Recognizes The Partially
Unfolded Dimer Of The Centromere-specific Cse4/h4
Histone Variant
Length = 121
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 19/123 (15%)
Query: 11 SKLPRDAQVIVNMFQEAGIKNYDPRC----VQQMLEFVNNYTTTILEDSRVYANHA--RD 64
SK+P A+++ + E K+ D R + + E Y +LE + + A H R
Sbjct: 3 SKIP-FARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRG 61
Query: 65 AQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAI 124
++ I + E + R V + ++ +++ DS Y HAK+KTV D+ A+
Sbjct: 62 SKRISGLIYE------EVRAV------LKSFLESVIRDSVTYTEHAKRKTVTSLDVVYAL 109
Query: 125 TNQ 127
Q
Sbjct: 110 KRQ 112
>pdb|2YFW|B Chain B, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|D Chain D, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|F Chain F, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|H Chain H, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
Length = 103
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K +++ + + +++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 35 IRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94
>pdb|2YFV|B Chain B, The Heterotrimeric Complex Of Kluyveromyces Lactis Scm3,
Cse4 And H4
Length = 74
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K +++ + + +++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 11 IRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 70
>pdb|1ID3|A Chain A, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|E Chain E, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 135
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 79 NYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
+ + + E V Y ++ ED+ + A HAK+ T+ ++IKLA
Sbjct: 83 RFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKEIKLA 127
>pdb|2L5A|A Chain A, Structural Basis For Recognition Of Centromere Specific
Histone H3 Variant By Nonhistone Scm3
Length = 235
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 74 EAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
+ G+K +++ + ++ +++ DS Y HAK+KTV D+ A+ Q
Sbjct: 173 KGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 65 AQVIVNMFQEAGIKNYDPRC----VQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDI 120
A+++ + E K+ D R + + E Y +LE + + A HAK+ T+ +D+
Sbjct: 18 ARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDM 77
Query: 121 KLAITNQLSGSFAKP 135
+LA ++ G F P
Sbjct: 78 QLA--RRIRGQFLVP 90
>pdb|1P3P|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + GIK ++ + + ++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 34 IRRLARRGGIKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 93
>pdb|1P3I|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K+ ++ + + ++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 34 IRRLARRGGVKHISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 93
>pdb|3AZI|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZI|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
Length = 106
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K ++ + + ++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 38 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 97
>pdb|3A6N|B Chain B, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|F Chain F, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3AFA|B Chain B, The Human Nucleosome Structure
pdb|3AFA|F Chain F, The Human Nucleosome Structure
pdb|3AV1|B Chain B, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|F Chain F, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV2|B Chain B, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|F Chain F, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AN2|B Chain B, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|F Chain F, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AYW|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AZE|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZF|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZG|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZH|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
Length = 106
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K ++ + + ++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 38 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 97
>pdb|3AZK|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
Length = 106
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K ++ + + ++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 38 IRRLARRGGVKRISGLIYEETRGVLQVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 97
>pdb|1HIO|D Chain D, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 76
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K ++ + + ++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 8 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 67
>pdb|1KX3|B Chain B, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|F Chain F, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|B Chain B, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX4|F Chain F, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX5|B Chain B, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|F Chain F, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1M18|B Chain B, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|F Chain F, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|B Chain B, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|F Chain F, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|B Chain B, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|F Chain F, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1P34|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1S32|B Chain B, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|F Chain F, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1ZBB|B Chain B, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|F Chain F, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|BB Chain b, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|FF Chain f, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZLA|B Chain B, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|F Chain F, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|2FJ7|B Chain B, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2FJ7|F Chain F, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2IO5|C Chain C, Crystal Structure Of The Cia- Histone H3-H4 Complex
pdb|2NZD|B Chain B, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|F Chain F, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3B6F|B Chain B, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|F Chain F, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|B Chain B, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|F Chain F, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3C1C|B Chain B, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|F Chain F, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C9K|D Chain D, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|H Chain H, Model Of Histone Octamer Tubular Crystals
pdb|3KUY|B Chain B, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3KUY|F Chain F, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3LJA|B Chain B, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LJA|F Chain F, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LEL|B Chain B, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|F Chain F, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|L Chain L, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|P Chain P, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3MGP|B Chain B, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|F Chain F, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|B Chain B, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|F Chain F, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|B Chain B, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|F Chain F, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|B Chain B, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|F Chain F, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3KXB|B Chain B, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|F Chain F, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3MVD|B Chain B, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|F Chain F, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3LZ0|B Chain B, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|F Chain F, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|B Chain B, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|F Chain F, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3O62|B Chain B, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|F Chain F, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3MNN|B Chain B, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|F Chain F, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3TU4|B Chain B, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3TU4|F Chain F, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3REH|B Chain B, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|F Chain F, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|B Chain B, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|F Chain F, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|B Chain B, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|F Chain F, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|B Chain B, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|F Chain F, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|B Chain B, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|F Chain F, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3UT9|B Chain B, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|F Chain F, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|B Chain B, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|F Chain F, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|B Chain B, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|F Chain F, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|4H9N|B Chain B, Complex Structure 1 Of DaxxH3.3(SUB5)H4
pdb|4H9O|B Chain B, Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4
pdb|4H9P|B Chain B, Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4
pdb|4H9Q|B Chain B, Complex Structure 4 Of Daxx(E225a)H3.3(SUB5)H4
pdb|4H9R|B Chain B, Complex Structure 5 Of Daxx(E225a)H3.3(SUB5,G90A)H4
Length = 102
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K ++ + + ++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 34 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 93
>pdb|3C1B|B Chain B, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|F Chain F, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 102
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K ++ + + ++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 34 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 93
>pdb|3AZN|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 106
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K ++ + + ++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 38 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALQRQ 97
>pdb|1EQZ|D Chain D, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|H Chain H, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1F66|B Chain B, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|F Chain F, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1HQ3|D Chain D, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|H Chain H, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|D Chain D, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|H Chain H, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2CV5|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
pdb|2ARO|D Chain D, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|H Chain H, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|1U35|B Chain B, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|F Chain F, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|2F8N|B Chain B, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
pdb|2F8N|F Chain F, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
pdb|3NQU|B Chain B, Crystal Structure Of Partially Trypsinized (Cenp-AH4)2
HETEROTETRAMER
pdb|3R45|B Chain B, Structure Of A Cenp-A-Histone H4 Heterodimer In Complex
With Chaperone Hjurp
pdb|4HGA|C Chain C, Structure Of The Variant Histone H3.3-H4 Heterodimer In
Complex With Its Chaperone Daxx
Length = 103
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K ++ + + ++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 35 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94
>pdb|1AOI|B Chain B, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
pdb|1AOI|F Chain F, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
Length = 87
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K ++ + + ++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 19 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 78
>pdb|4EO5|C Chain C, Yeast Asf1 Bound To H3H4G94P MUTANT
Length = 83
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K ++ + + ++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 15 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 74
>pdb|1P3G|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K ++ + + ++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 34 IRRLARRGGVKEISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 93
>pdb|2PYO|B Chain B, Drosophila Nucleosome Core
pdb|2PYO|F Chain F, Drosophila Nucleosome Core
Length = 102
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K ++ + + ++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 34 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 93
>pdb|2HIO|D Chain D, Histone Octamer (Chicken), Chromosomal Protein
Length = 103
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K ++ + + ++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 35 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94
>pdb|2HUE|C Chain C, Structure Of The H3-h4 Chaperone Asf1 Bound To Histones H3
And H4
pdb|3NQJ|B Chain B, Crystal Structure Of (Cenp-AH4)2 HETEROTETRAMER
Length = 84
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K ++ + + ++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 16 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75
>pdb|3KWQ|B Chain B, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|F Chain F, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|4H9S|C Chain C, Complex Structure 6 Of DaxxH3.3(SUB7)H4
pdb|4H9S|D Chain D, Complex Structure 6 Of DaxxH3.3(SUB7)H4
Length = 83
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K ++ + + ++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 15 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 74
>pdb|2NQB|B Chain B, Drosophila Nucleosome Structure
pdb|2NQB|F Chain F, Drosophila Nucleosome Structure
Length = 103
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K ++ + + ++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 35 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94
>pdb|1P3B|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K ++ + + ++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 34 IRRLARRGGVKAISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 93
>pdb|1P3F|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K ++ + + ++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 34 IRRLARRGGVKCISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 93
>pdb|3AZH|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
Length = 139
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 85 VQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
V + E Y + ED+ + A HAK+ T+ +DI+LA
Sbjct: 93 VMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPQDIQLA 131
>pdb|4DRA|A Chain A, Crystal Structure Of Mhf Complex
pdb|4DRA|B Chain B, Crystal Structure Of Mhf Complex
pdb|4DRA|C Chain C, Crystal Structure Of Mhf Complex
pdb|4DRA|D Chain D, Crystal Structure Of Mhf Complex
Length = 113
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 101 EDSRVYANHAKKKTVDVEDIKL 122
+D ++A HAK+ T++ ED+KL
Sbjct: 69 KDLEMFARHAKRTTINTEDVKL 90
>pdb|3AZF|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
Length = 139
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 85 VQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
V + E Y + ED+ + A HAK+ T+ +DI+LA
Sbjct: 93 VMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 131
>pdb|3AZE|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
Length = 139
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 85 VQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
V + E Y + ED+ + A HAK+ T+ +DI+LA
Sbjct: 93 VMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 131
>pdb|3AYW|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
Length = 139
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 85 VQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
V + E Y + ED+ + A HAK+ T+ +DI+LA
Sbjct: 93 VMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 131
>pdb|3AZM|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
Length = 106
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 27/60 (45%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K ++ + + ++ D+ Y HAK++TV D+ A+ Q
Sbjct: 38 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRQTVTAMDVVYALKRQ 97
>pdb|3AZL|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
Length = 106
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 27/60 (45%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K ++ + + ++ D+ Y HA++KTV D+ A+ Q
Sbjct: 38 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAQRKTVTAMDVVYALKRQ 97
>pdb|3AZJ|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZJ|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
Length = 106
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 27/60 (45%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G++ ++ + + ++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 38 IRRLARRGGVQRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 97
>pdb|3AFA|A Chain A, The Human Nucleosome Structure
pdb|3AFA|E Chain E, The Human Nucleosome Structure
pdb|3AZI|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZI|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZJ|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZJ|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZK|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZL|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZM|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZN|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 139
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 85 VQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
V + E Y + ED+ + A HAK+ T+ +DI+LA
Sbjct: 93 VMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 131
>pdb|2CV5|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
pdb|1U35|A Chain A, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|E Chain E, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
Length = 136
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 85 VQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
V + E Y + ED+ + A HAK+ T+ +DI+LA
Sbjct: 90 VMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128
>pdb|3C1C|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|E Chain E, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 135
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 84 CVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
V + E Y + ED+ + A HAK+ T+ +DI+LA
Sbjct: 88 AVMALQEASEAYLVALFEDTNLAAIHAKRVTIMPKDIQLA 127
>pdb|4AWL|B Chain B, The Nf-y Transcription Factor Is Structurally And
Functionally A Sequence Specific Histone
Length = 94
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 57 VYANHARDAQVIVNMFQEAGIKNYDPR-CVQQMLEFVNNYTTTILEDSRVYANHAKKKTV 115
+Y A A+++ N + G D + CVQ E V+ + + I ++ + K+KT+
Sbjct: 8 IYLPIANVARIMKNAIPQTGKIAKDAKECVQ---ECVSEFISFITSEASERCHQEKRKTI 64
Query: 116 DVEDIKLAITNQLSGSFAKP 135
+ EDI A++ S+ +P
Sbjct: 65 NGEDILFAMSTLGFDSYVEP 84
>pdb|1P3O|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G K ++ + + ++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 34 IRRLARRGGAKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 93
>pdb|1N1J|A Chain A, Crystal Structure Of The Nf-YbNF-Yc Histone Pair
Length = 93
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 57 VYANHARDAQVIVNMFQEAGIKNYDPR-CVQQMLEFVNNYTTTILEDSRVYANHAKKKTV 115
+Y A A+++ N + G D + CVQ E V+ + + I ++ + K+KT+
Sbjct: 7 IYLPIANVARIMKNAIPQTGKIAKDAKECVQ---ECVSEFISFITSEASERCHQEKRKTI 63
Query: 116 DVEDIKLAITNQLSGSFAKP 135
+ EDI A++ S+ +P
Sbjct: 64 NGEDILFAMSTLGFDSYVEP 83
>pdb|1M18|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
Length = 135
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 85 VQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
V + E Y + ED+ + A HAK+ T+ +DI+LA
Sbjct: 89 VMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLA 127
>pdb|3LEL|A Chain A, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|E Chain E, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|K Chain K, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|O Chain O, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
Length = 136
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 84 CVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
V + E Y + ED+ + A HAK+ T+ +DI+LA
Sbjct: 89 AVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLA 128
>pdb|1KX3|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|E Chain E, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX4|E Chain E, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX5|A Chain A, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|E Chain E, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1S32|A Chain A, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|E Chain E, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1ZBB|A Chain A, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|E Chain E, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|AA Chain a, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|EE Chain e, Structure Of The 4_601_167 Tetranucleosome
pdb|2FJ7|A Chain A, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2FJ7|E Chain E, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2NZD|A Chain A, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|E Chain E, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3B6F|A Chain A, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|E Chain E, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|A Chain A, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|E Chain E, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3C1B|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|E Chain E, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3KUY|A Chain A, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3KUY|E Chain E, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3LJA|A Chain A, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LJA|E Chain E, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3MGP|A Chain A, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|E Chain E, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|A Chain A, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|E Chain E, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|A Chain A, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|E Chain E, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|A Chain A, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|E Chain E, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MVD|A Chain A, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|E Chain E, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3LZ0|A Chain A, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|E Chain E, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|A Chain A, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|E Chain E, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3O62|A Chain A, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|E Chain E, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3MNN|A Chain A, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|E Chain E, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3TU4|A Chain A, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3TU4|E Chain E, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3REH|A Chain A, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|E Chain E, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|A Chain A, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|E Chain E, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|A Chain A, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|E Chain E, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|A Chain A, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|E Chain E, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|A Chain A, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|E Chain E, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3UT9|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
Length = 135
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 84 CVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
V + E Y + ED+ + A HAK+ T+ +DI+LA
Sbjct: 88 AVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLA 127
>pdb|3KXB|A Chain A, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|E Chain E, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
Length = 135
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 84 CVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
V + E Y + ED+ + A HAK+ T+ +DI+LA
Sbjct: 88 AVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLA 127
>pdb|1F66|A Chain A, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|E Chain E, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
Length = 136
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 84 CVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
V + E Y + ED+ + A HAK+ T+ +DI+LA
Sbjct: 89 AVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLA 128
>pdb|1P3B|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 84 CVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
V + E Y + ED+ + A HAK+ T+ +DI+LA
Sbjct: 88 AVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLA 127
>pdb|1AOI|A Chain A, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
pdb|1AOI|E Chain E, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
Length = 116
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 85 VQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
V + E Y + ED+ + A HAK+ T+ +DI+LA
Sbjct: 70 VMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLA 108
>pdb|1TAF|B Chain B, Drosophila Tbp Associated Factors Dtafii42DTAFII62
HETEROTETRAMER
Length = 70
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 28/49 (57%)
Query: 76 GIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAI 124
G+ + +++ E V+ I++D+ + NHAK++ + V DI +++
Sbjct: 20 GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSL 68
>pdb|2HUE|B Chain B, Structure Of The H3-h4 Chaperone Asf1 Bound To Histones H3
And H4
Length = 77
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 95 YTTTILEDSRVYANHAKKKTVDVEDIKLA 123
Y + ED+ + A HAK+ T+ +DI+LA
Sbjct: 41 YLVALFEDTNLCAIHAKRVTIMPKDIQLA 69
>pdb|4EO5|B Chain B, Yeast Asf1 Bound To H3H4G94P MUTANT
Length = 76
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 95 YTTTILEDSRVYANHAKKKTVDVEDIKLA 123
Y + ED+ + A HAK+ T+ +DI+LA
Sbjct: 40 YLVALFEDTNLCAIHAKRVTIMPKDIQLA 68
>pdb|3B0C|T Chain T, Crystal Structure Of The Chicken Cenp-T Histone FoldCENP-W
Complex, Crystal Form I
pdb|3B0D|T Chain T, Crystal Structure Of The Chicken Cenp-T Histone FoldCENP-W
Complex, Crystal Form Ii
pdb|3B0D|B Chain B, Crystal Structure Of The Chicken Cenp-T Histone FoldCENP-W
Complex, Crystal Form Ii
Length = 111
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 93 NNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
Y I D Y+ HA +KTV++ D++L + Q
Sbjct: 38 ERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQ 72
>pdb|4DRB|A Chain A, The Crystal Structure Of Fancm Bound Mhf Complex
pdb|4DRB|B Chain B, The Crystal Structure Of Fancm Bound Mhf Complex
pdb|4DRB|D Chain D, The Crystal Structure Of Fancm Bound Mhf Complex
pdb|4DRB|E Chain E, The Crystal Structure Of Fancm Bound Mhf Complex
pdb|4DRB|G Chain G, The Crystal Structure Of Fancm Bound Mhf Complex
pdb|4DRB|H Chain H, The Crystal Structure Of Fancm Bound Mhf Complex
Length = 120
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 102 DSRVYANHAKKKTVDVEDIKL 122
D +A HAK+ T++ ED+KL
Sbjct: 70 DLEXFARHAKRTTINTEDVKL 90
>pdb|3VH5|A Chain A, Crystal Structure Of The Chicken Cenp-T Histone
FoldCENP-WCENP- SCENP-X Heterotetrameric Complex,
Crystal Form I
pdb|3VH6|A Chain A, Crystal Structure Of The Chicken Cenp-T Histone
FoldCENP-WCENP- SCENP-X Heterotetrameric Complex,
Crystal Form Ii
Length = 140
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 102 DSRVYANHAKKKTVDVEDIKL 122
D ++A HAK+ T+ ED+KL
Sbjct: 62 DLEMFARHAKRSTITSEDVKL 82
>pdb|3AV1|A Chain A, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|E Chain E, The Human Nucleosome Structure Containing The Histone
Variant H3.2
Length = 139
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 79 NYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
+ V + E Y + ED+ + A HAK+ T+ +DI+LA
Sbjct: 87 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 131
>pdb|3VH5|T Chain T, Crystal Structure Of The Chicken Cenp-T Histone
FoldCENP-WCENP- SCENP-X Heterotetrameric Complex,
Crystal Form I
pdb|3VH6|T Chain T, Crystal Structure Of The Chicken Cenp-T Histone
FoldCENP-WCENP- SCENP-X Heterotetrameric Complex,
Crystal Form Ii
Length = 111
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 93 NNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
Y I D Y+ HA +KTV++ D++L + Q
Sbjct: 38 ERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQ 72
>pdb|2HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein
pdb|1EQZ|C Chain C, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|G Chain G, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|C Chain C, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|G Chain G, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|C Chain C, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|G Chain G, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2ARO|C Chain C, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|G Chain G, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2F8N|A Chain A, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
pdb|2F8N|E Chain E, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 136
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 84 CVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
V + E Y + ED+ + A HAK+ T+ +DI+LA
Sbjct: 89 AVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128
>pdb|3A6N|A Chain A, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|E Chain E, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
Length = 139
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 85 VQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
V + E +Y + ED+ + HAK+ T+ +DI+LA
Sbjct: 93 VMALQEACESYLVGLFEDTNLCVIHAKRVTIMPKDIQLA 131
>pdb|2B4C|G Chain G, Crystal Structure Of Hiv-1 Jr-fl Gp120 Core Protein
Containing The Third Variable Region (v3) Complexed With
Cd4 And The X5 Antibody
Length = 344
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 5 NSQSSTSKLPRDAQVIVNMFQEAGIKNYDP 34
N++ +T LP + I+NM+QE G Y P
Sbjct: 260 NTEGNTITLPCRIKQIINMWQEVGKAMYAP 289
>pdb|2IO5|B Chain B, Crystal Structure Of The Cia- Histone H3-H4 Complex
pdb|2NQB|A Chain A, Drosophila Nucleosome Structure
pdb|2NQB|E Chain E, Drosophila Nucleosome Structure
pdb|2PYO|A Chain A, Drosophila Nucleosome Core
pdb|2PYO|E Chain E, Drosophila Nucleosome Core
pdb|3C9K|C Chain C, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|G Chain G, Model Of Histone Octamer Tubular Crystals
Length = 135
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 84 CVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
V + E Y + ED+ + A HAK+ T+ +DI+LA
Sbjct: 88 AVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 127
>pdb|3KWQ|A Chain A, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|E Chain E, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
Length = 98
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 95 YTTTILEDSRVYANHAKKKTVDVEDIKLA 123
Y + ED+ + A HAK+ T+ +DI+LA
Sbjct: 62 YLVALFEDTNLCAIHAKRVTIMPKDIQLA 90
>pdb|3AV2|A Chain A, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|E Chain E, The Human Nucleosome Structure Containing The Histone
Variant H3.3
Length = 139
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 90 EFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
E Y + ED+ + A HAK+ T+ +DI+LA
Sbjct: 98 EASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 131
>pdb|3AZG|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
Length = 139
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 85 VQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
V + E Y + ED+ + A HA++ T+ +DI+LA
Sbjct: 93 VMALQEACEAYLVGLFEDTNLCAIHAQRVTIMPKDIQLA 131
>pdb|1HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 93
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 95 YTTTILEDSRVYANHAKKKTVDVEDIKLA 123
Y + ED+ + A HAK+ T+ +DI+LA
Sbjct: 57 YLVGLFEDTNLCAIHAKRVTIMPKDIELA 85
>pdb|4HGA|B Chain B, Structure Of The Variant Histone H3.3-H4 Heterodimer In
Complex With Its Chaperone Daxx
Length = 136
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 90 EFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
E Y + ED+ + A HAK+ T+ +DI+LA
Sbjct: 95 EASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128
>pdb|3B0B|B Chain B, Crystal Structure Of The Chicken Cenp-SCENP-X Complex
pdb|3B0B|A Chain A, Crystal Structure Of The Chicken Cenp-SCENP-X Complex
Length = 107
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 102 DSRVYANHAKKKTVDVEDIKL 122
D +A HAK+ T+ ED+KL
Sbjct: 62 DLEXFARHAKRSTITSEDVKL 82
>pdb|1P34|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 84 CVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
V + E Y + ED+ + A HAK T+ +DI+LA
Sbjct: 88 AVMALQEASEAYLVALFEDTNLCAIHAKAVTIMPKDIQLA 127
>pdb|1P3A|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 84 CVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
V + E Y + ED+ + A HAK T+ +DI+LA
Sbjct: 88 AVMALQEASEAYLVALFEDTNLCAIHAKHVTIMPKDIQLA 127
>pdb|3B07|A Chain A, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
pdb|3B07|C Chain C, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
pdb|3B07|E Chain E, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
pdb|3B07|G Chain G, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
Length = 309
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 82 PRCVQQMLEFVNNYTTTILEDSRVYA-------NHAKKKTVDVEDIKLAITNQLSGSFAK 134
P V+++ + V Y TT DS + N K K+ D + + L T ++ F K
Sbjct: 16 PVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVLKATGNINSGFVK 75
Query: 135 PPPRE 139
P P +
Sbjct: 76 PNPND 80
>pdb|1LKF|A Chain A, Leukocidin F (Hlgb) From Staphylococcus Aureus
pdb|2LKF|A Chain A, Leukocidin F (Hlgb) From Staphylococcus Aureus
pdb|3LKF|A Chain A, Leukocidin F (Hlgb) From Staphylococcus Aureus With
Phosphocholine Bound
Length = 299
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 82 PRCVQQMLEFVNNYTTTILEDSRVYA-------NHAKKKTVDVEDIKLAITNQLSGSFAK 134
P V+++ + V Y TT DS + N K K+ D + + L T ++ F K
Sbjct: 6 PVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVLKATGNINSGFVK 65
Query: 135 PPPRE 139
P P +
Sbjct: 66 PNPND 70
>pdb|1F1E|A Chain A, Crystal Structure Of The Histone From Methanopyrus
Kandleri
Length = 154
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAIT 125
+ + + AGI+ V + + T + E + YA+ +KTV ED++ AIT
Sbjct: 88 VRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAIT 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.126 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,820,730
Number of Sequences: 62578
Number of extensions: 179268
Number of successful extensions: 430
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 91
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)