BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8542
(182 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q62880|TAF9B_RAT Transcription initiation factor TFIID subunit 9B OS=Rattus
norvegicus GN=Taf9b PE=2 SV=2
Length = 258
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 57/80 (71%)
Query: 60 NHARDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVED 119
N RDA V+ + ++ GI +Y+PR + QMLEF Y TTIL+D+++Y++HAKK TVD +D
Sbjct: 11 NAPRDALVMAQILKDMGITDYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDADD 70
Query: 120 IKLAITNQLSGSFAKPPPRE 139
++LAI + SF PPPR+
Sbjct: 71 VRLAIQCRADQSFTSPPPRD 90
>sp|Q6NZA9|TAF9B_MOUSE Transcription initiation factor TFIID subunit 9B OS=Mus musculus
GN=Taf9b PE=1 SV=2
Length = 249
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 56/80 (70%)
Query: 60 NHARDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVED 119
N RDA V+ + ++ GI Y+PR + QMLEF Y TTIL+D+++Y++HAKK TVD +D
Sbjct: 11 NAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDADD 70
Query: 120 IKLAITNQLSGSFAKPPPRE 139
++LAI + SF PPPR+
Sbjct: 71 VRLAIQCRADQSFTSPPPRD 90
>sp|Q17QQ4|TAF9_BOVIN Transcription initiation factor TFIID subunit 9 OS=Bos taurus
GN=TAF9 PE=2 SV=1
Length = 264
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 56/77 (72%)
Query: 63 RDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKL 122
+DAQ++ + ++ GI Y+PR + QMLEF Y TTIL+D+++Y++HAKK TVD +D++L
Sbjct: 14 KDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADDVRL 73
Query: 123 AITNQLSGSFAKPPPRE 139
AI + SF PPPR+
Sbjct: 74 AIQCRADQSFTSPPPRD 90
>sp|Q16594|TAF9_HUMAN Transcription initiation factor TFIID subunit 9 OS=Homo sapiens
GN=TAF9 PE=1 SV=1
Length = 264
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 56/77 (72%)
Query: 63 RDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKL 122
+DAQ++ + ++ GI Y+PR + QMLEF Y TTIL+D+++Y++HAKK TVD +D++L
Sbjct: 14 KDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADDVRL 73
Query: 123 AITNQLSGSFAKPPPRE 139
AI + SF PPPR+
Sbjct: 74 AIQCRADQSFTSPPPRD 90
>sp|Q5BKE0|TAF9_RAT Transcription initiation factor TFIID subunit 9 OS=Rattus
norvegicus GN=Taf9 PE=2 SV=1
Length = 264
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 56/77 (72%)
Query: 63 RDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKL 122
+DAQ++ + ++ GI Y+PR + QMLEF Y TTIL+D+++Y++HAKK TVD +D++L
Sbjct: 14 KDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDADDVRL 73
Query: 123 AITNQLSGSFAKPPPRE 139
AI + SF PPPR+
Sbjct: 74 AIQCRADQSFTSPPPRD 90
>sp|Q8VI33|TAF9_MOUSE Transcription initiation factor TFIID subunit 9 OS=Mus musculus
GN=Taf9 PE=2 SV=1
Length = 264
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 56/77 (72%)
Query: 63 RDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKL 122
+DAQ++ + ++ GI Y+PR + QMLEF Y TTIL+D+++Y++HAKK TVD +D++L
Sbjct: 14 KDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADDVRL 73
Query: 123 AITNQLSGSFAKPPPRE 139
AI + SF PPPR+
Sbjct: 74 AIQCRADQSFTSPPPRD 90
>sp|Q5R7P7|TAF9B_PONAB Transcription initiation factor TFIID subunit 9B OS=Pongo abelii
GN=TAF9B PE=2 SV=1
Length = 251
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 55/80 (68%)
Query: 60 NHARDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVED 119
N RDA V+ + ++ GI Y+PR + QMLEF Y TTIL+D+++Y++HAKK VD +D
Sbjct: 11 NAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDADD 70
Query: 120 IKLAITNQLSGSFAKPPPRE 139
++LAI + SF PPPR+
Sbjct: 71 VRLAIQCRADQSFTSPPPRD 90
>sp|Q9HBM6|TAF9B_HUMAN Transcription initiation factor TFIID subunit 9B OS=Homo sapiens
GN=TAF9B PE=1 SV=1
Length = 251
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 55/80 (68%)
Query: 60 NHARDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVED 119
N RDA V+ + ++ GI Y+PR + QMLEF Y TTIL+D+++Y++HAKK VD +D
Sbjct: 11 NAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDADD 70
Query: 120 IKLAITNQLSGSFAKPPPRE 139
++LAI + SF PPPR+
Sbjct: 71 VRLAIQCRADQSFTSPPPRD 90
>sp|Q27272|TAF9_DROME Transcription initiation factor TFIID subunit 9 OS=Drosophila
melanogaster GN=e(y)1 PE=1 SV=1
Length = 278
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 54/73 (73%)
Query: 63 RDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKL 122
+DAQVI+++ +E ++ Y+PR V Q+LEF Y T IL+D++VYANHA+KKT+D++D++L
Sbjct: 20 KDAQVIMSILKELNVQEYEPRVVNQLLEFTFRYVTCILDDAKVYANHARKKTIDLDDVRL 79
Query: 123 AITNQLSGSFAKP 135
A L SF P
Sbjct: 80 ATEVTLDKSFTGP 92
>sp|Q8SSI9|TAF9_ENCCU Transcription initiation factor TFIID subunit 9 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=TAF9 PE=1 SV=1
Length = 137
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%)
Query: 63 RDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKL 122
RDA+VI + + GI+ +P+ + Q+LEF YTT +LED+ ++A H + + D+KL
Sbjct: 10 RDAKVISVILRSLGIEECEPKVIIQLLEFAYRYTTDVLEDALLFAKHTGRTHITTSDVKL 69
Query: 123 AITNQLSGSFAKPPPRE 139
A+ ++ F PPPR+
Sbjct: 70 ALQTKVGRHFVPPPPRQ 86
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 14 PRDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANH 61
PRDA+VI + + GI+ +P+ + Q+LEF YTT +LED+ ++A H
Sbjct: 9 PRDAKVISVILRSLGIEECEPKVIIQLLEFAYRYTTDVLEDALLFAKH 56
>sp|Q09869|TAF9_SCHPO Transcription initiation factor TFIID subunit 9
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf9 PE=1 SV=1
Length = 163
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 63 RDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKK--TVDVEDI 120
+D ++I + G+ +Y Q+L F + YT +++DS+VYA H++ + + VED+
Sbjct: 15 KDVRLIHLILSSLGVPSYSQTVPLQLLTFAHRYTQQLIQDSQVYAEHSRGQNAPISVEDV 74
Query: 121 KLAITNQLSGSFAKPPPRE 139
+LA+ +Q++ SF PPP+E
Sbjct: 75 RLAVASQINHSFTGPPPKE 93
>sp|Q05027|TAF9_YEAST Transcription initiation factor TFIID subunit 9 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF9 PE=1
SV=1
Length = 157
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 63 RDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKK-----KTVDV 117
RD +++ + I Y+ + Q+++F + YT +L+D+ VY ++A + V
Sbjct: 31 RDVRLLHLLLASQSIHQYEDQVPLQLMDFAHRYTQGVLKDALVYNDYAGSGNSAGSGLGV 90
Query: 118 EDIKLAITNQLSGSFAKPPPRE 139
EDI+LAI + F P+E
Sbjct: 91 EDIRLAIAARTQYQFKPTAPKE 112
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 35/62 (56%)
Query: 1 MANVNSQSSTSKLPRDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYAN 60
++ V S+ + PRD +++ + I Y+ + Q+++F + YT +L+D+ VY +
Sbjct: 17 VSEVGPDSTQEETPRDVRLLHLLLASQSIHQYEDQVPLQLMDFAHRYTQGVLKDALVYND 76
Query: 61 HA 62
+A
Sbjct: 77 YA 78
>sp|O74098|HARA_PYRHO Archaeal histone A OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1782.1
PE=1 SV=2
Length = 67
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 70 NMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126
+ ++AG + + + + E++ Y I + + +A HA +KTV VEDIKLAI +
Sbjct: 11 RLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 67
>sp|P61882|HARA_PYRFU Archaeal histone A OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=PF1831 PE=3 SV=1
Length = 67
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 70 NMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126
+ ++AG + + + + E++ Y + + + +A HA +KTV VEDIKLAI +
Sbjct: 11 RLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVEDIKLAIKS 67
>sp|P61881|HARA_PYRAB Archaeal histone A OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=PYRAB03470 PE=3 SV=1
Length = 67
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 70 NMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126
+ ++AG + + + + E++ Y + + + +A HA +KTV VEDIKLAI +
Sbjct: 11 RLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVEDIKLAIKS 67
>sp|O28779|HAF2_ARCFU Probable archaeal histone A1-2 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=hpyA1-2 PE=3 SV=1
Length = 67
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 34/56 (60%)
Query: 70 NMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAIT 125
+ ++AG + V++M+E + +Y T+ + + A H+ +KTV +DIKLA++
Sbjct: 11 RLIRKAGAERVSADAVEKMVEVLEDYAITVAKKAVEIAKHSGRKTVTADDIKLALS 66
>sp|P50485|HARA_PYRSG Archaeal histone A OS=Pyrococcus sp. (strain GB-3a) GN=hpyA1 PE=3
SV=1
Length = 67
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 70 NMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126
+ ++AG + + + E++ Y + + + +A HA +KTV EDIKLAI +
Sbjct: 11 RLIRKAGAERVSEEAAKILAEYLEEYAIEVSKKAVEFARHAGRKTVKAEDIKLAIKS 67
>sp|Q58342|HJA2_METJA Probable archaeal histone 2 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0932 PE=3 SV=1
Length = 67
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 70 NMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAI 124
+ ++AG + + + E V I +++ A HAK+KTV VEDIKLA+
Sbjct: 11 RILKKAGAERVSRAAAEYLAEAVEEIALEIAKEAVELAKHAKRKTVKVEDIKLAL 65
>sp|Q57632|HJA1_METJA Probable archaeal histone 1 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0168 PE=3 SV=1
Length = 67
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 70 NMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126
+ ++AG + + + E V I +++ A HAK+KTV VEDIKLA+
Sbjct: 11 RILKKAGAERVSRAAAEYLAEAVEEIALEIAKEAVELAKHAKRKTVKVEDIKLALKK 67
>sp|Q9Y8I1|HARA_PYRKO Archaeal histone A OS=Pyrococcus kodakaraensis (strain ATCC BAA-918
/ JCM 12380 / KOD1) GN=hpkA PE=3 SV=1
Length = 67
Score = 37.0 bits (84), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 70 NMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAI 124
+ ++AG + + + E++ Y + + + +A HA +KTV EDIKLAI
Sbjct: 11 RLIRKAGAERVSEDAAKVLAEYLEEYAIELSKKAVDFARHAGRKTVKAEDIKLAI 65
>sp|P95669|HANA_THEZI Archaeal histone HAN1 subunit A OS=Thermococcus zilligii GN=han1A
PE=1 SV=3
Length = 67
Score = 37.0 bits (84), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAI 124
I + ++AG + + + E++ Y + + + +A HA +KTV ED++LA+
Sbjct: 9 IDRLIRKAGAERVSEDAAKALAEYLEEYAIEVGKKATEFARHAGRKTVKAEDVRLAV 65
>sp|Q9V1F5|HARB_PYRAB Archaeal histone B OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=PYRAB04720 PE=3 SV=1
Length = 67
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 70 NMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126
+ ++AG + + + + E + I + + A HA +KTV VEDIKLAI +
Sbjct: 11 RLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVEDIKLAIRS 67
>sp|O74092|HARB_PYRHO Archaeal histone B OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1701.1
PE=3 SV=2
Length = 67
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 70 NMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126
+ ++AG + + + + E + I + A HA +KTV VEDIKLAI +
Sbjct: 11 RLIRKAGAQRVSEKAAKLLAEHLEEKALEIARKAVDLAKHAGRKTVKVEDIKLAIRS 67
>sp|O59627|HARB_PYRFU Archaeal histone B OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=PF1722 PE=3 SV=2
Length = 67
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 70 NMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126
+ ++AG + + + + E + I + + A HA +KTV VEDIKLAI +
Sbjct: 11 RLIRKAGAQRVSEQAAKVLAEHLEEKAIEIAKKAVDLAKHAGRKTVKVEDIKLAIKS 67
>sp|P32325|DBF4_YEAST DDK kinase regulatory subunit DBF4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DBF4 PE=1 SV=2
Length = 704
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 53 EDSRVYANHARDAQVIVNMFQEAGIKNYDPRCV-QQMLEFVNNYTTTILEDSRVY 106
E R AR + V + + G+KN +PR +++LE+ N+ + DSR+Y
Sbjct: 73 EKKRARIERARSIEGAVQVSKGTGLKNVEPRVTPKELLEWQTNWKKIMKRDSRIY 127
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 15 RDAQVIVNMFQEAGIKNYDPRCV-QQMLEFVNNYTTTILEDSRVYANHARDAQV 67
R + V + + G+KN +PR +++LE+ N+ + DSR+Y + D ++
Sbjct: 83 RSIEGAVQVSKGTGLKNVEPRVTPKELLEWQTNWKKIMKRDSRIYFDITDDVEM 136
>sp|P80739|H4_EUPCR Histone H4 OS=Euplotes crassus PE=1 SV=3
Length = 107
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 28/60 (46%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K ++ + + +++ DS Y HAK+KTV D+ A+ Q
Sbjct: 39 IRRLARRGGVKRISSLVYEETRAVLKGFLESVIRDSVTYTEHAKRKTVTALDVVYALKRQ 98
>sp|Q8SQP4|H4_ENCCU Histone H4 OS=Encephalitozoon cuniculi (strain GB-M1) GN=HHF1 PE=3
SV=1
Length = 103
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDI 120
I + + AG++ C +++ Y L + +YA HAK+KT+ DI
Sbjct: 37 IRRIARRAGVRRVGGGCFKEINNAAREYIRDTLSIACIYATHAKRKTITCSDI 89
>sp|Q9Y8I2|HARB_PYRKO Archaeal histone B OS=Pyrococcus kodakaraensis (strain ATCC BAA-918
/ JCM 12380 / KOD1) GN=hpkB PE=3 SV=1
Length = 67
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 70 NMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126
+ ++AG + + E + I + + A HA +KTV EDIKLAI +
Sbjct: 11 RLIRKAGAARVSEEAAKVLAEHLEEKALEIAKKAVALAQHAGRKTVKAEDIKLAIKS 67
>sp|P02309|H4_YEAST Histone H4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=HHF1 PE=1 SV=2
Length = 103
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K +++ + ++ +++ DS Y HAK+KTV D+ A+ Q
Sbjct: 35 IRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 94
>sp|P08436|H4_VOLCA Histone H4 OS=Volvox carteri GN=H4-I PE=3 SV=2
Length = 103
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 28/60 (46%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K ++ + N+ ++ DS Y HA++KTV D+ A+ Q
Sbjct: 35 IRRLARRGGVKRISGLIYEETRTVLKNFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQ 94
>sp|P61836|H3_ZYGBA Histone H3 OS=Zygosaccharomyces bailii GN=HHT1 PE=1 SV=2
Length = 136
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 79 NYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
+ + + E V Y ++ ED+ + A HAK+ T+ +DIKLA
Sbjct: 84 RFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLA 128
>sp|P61830|H3_YEAST Histone H3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=HHT1 PE=1 SV=2
Length = 136
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 79 NYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
+ + + E V Y ++ ED+ + A HAK+ T+ +DIKLA
Sbjct: 84 RFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLA 128
>sp|P61831|H3_KLULA Histone H3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=HHT1 PE=3
SV=2
Length = 136
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 79 NYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
+ + + E V Y ++ ED+ + A HAK+ T+ +DIKLA
Sbjct: 84 RFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLA 128
>sp|P61833|H3_CANGA Histone H3 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=HHT1 PE=3 SV=2
Length = 136
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 79 NYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
+ + + E V Y ++ ED+ + A HAK+ T+ +DIKLA
Sbjct: 84 RFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLA 128
>sp|Q757N1|H3_ASHGO Histone H3 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=HHT1 PE=3 SV=3
Length = 136
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 79 NYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
+ + + E V Y ++ ED+ + A HAK+ T+ +DIKLA
Sbjct: 84 RFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLA 128
>sp|P50486|HARB_PYRSG Archaeal histone B OS=Pyrococcus sp. (strain GB-3a) GN=hpyA2 PE=3
SV=2
Length = 67
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 70 NMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126
+ ++AG + + + + E + I + A HA +KTV EDIKLAI +
Sbjct: 11 RLIRKAGAQRVSEQAAKLLAEHLEEKALEIARKAVDLAKHAGRKTVKAEDIKLAIRS 67
>sp|P62791|H4_STYLE Histone H4 OS=Stylonychia lemnae PE=3 SV=2
Length = 104
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 28/60 (46%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K ++ + ++ ++ DS Y HAK+KTV D+ A+ Q
Sbjct: 36 IRRLARRGGVKRISSLIYEETRNVLRSFLENVIRDSVTYTEHAKRKTVTALDVVYALKRQ 95
>sp|P62790|H4_OXYNO Histone H4 OS=Oxytricha nova PE=3 SV=2
Length = 104
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 28/60 (46%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K ++ + ++ ++ DS Y HAK+KTV D+ A+ Q
Sbjct: 36 IRRLARRGGVKRISSLIYEETRNVLRSFLENVIRDSVTYTEHAKRKTVTALDVVYALKRQ 95
>sp|Q8NIG3|H4_CANGA Histone H4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=HHF1 PE=3 SV=3
Length = 103
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 30/60 (50%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K +++ + ++ +++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 35 IRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94
>sp|Q60264|HJA4_METJA Probable archaeal histone 4 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJECL29 PE=3 SV=1
Length = 67
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 70 NMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126
+ ++ G + + + E I +++ A HAK+KTV VEDIKLA+
Sbjct: 11 RILKKVGAERVSRAAAEYLAEAFEEIALEIAKEAVDLAKHAKRKTVKVEDIKLALKK 67
>sp|P07041|H3_NEUCR Histone H3 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=hh3 PE=1 SV=3
Length = 136
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 90 EFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
E V +Y ++ ED+ + A HAK+ T+ +DI+LA
Sbjct: 95 ESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQLA 128
>sp|Q5DWI3|H3_MARPO Histone H3 OS=Marchantia polymorpha PE=3 SV=3
Length = 136
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 90 EFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
E V +Y ++ ED+ + A HAK+ T+ +DI+LA
Sbjct: 95 ESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQLA 128
>sp|A4RCX7|H3_MAGO7 Histone H3 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=HHT1 PE=3 SV=1
Length = 136
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 90 EFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
E V +Y ++ ED+ + A HAK+ T+ +DI+LA
Sbjct: 95 ESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQLA 128
>sp|P61835|H3_HYPJE Histone H3 OS=Hypocrea jecorina GN=HHT1 PE=3 SV=2
Length = 136
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 90 EFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
E V +Y ++ ED+ + A HAK+ T+ +DI+LA
Sbjct: 95 ESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQLA 128
>sp|Q4IER8|H3_GIBZE Histone H3 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC
9075 / NRRL 31084) GN=HHT1 PE=3 SV=3
Length = 136
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 90 EFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
E V +Y ++ ED+ + A HAK+ T+ +DI+LA
Sbjct: 95 ESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQLA 128
>sp|Q6DL03|H3_CHAGB Histone H3 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=HHT1 PE=2 SV=3
Length = 136
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 90 EFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
E V +Y ++ ED+ + A HAK+ T+ +DI+LA
Sbjct: 95 ESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQLA 128
>sp|P33334|PRP8_YEAST Pre-mRNA-splicing factor 8 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PRP8 PE=1 SV=1
Length = 2413
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 33/66 (50%)
Query: 75 AGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQLSGSFAK 134
AG+ + D + + + ++ + L+ RV+A +A K+ ++ + +L GS+ +
Sbjct: 1427 AGMTHEDEKLIPTIFRYITTWENEFLDSQRVWAEYATKRQEAIQQNRRLAFEELEGSWDR 1486
Query: 135 PPPRES 140
PR S
Sbjct: 1487 GIPRIS 1492
>sp|Q8J1L3|H4_BLAAD Histone H4 OS=Blastobotrys adeninivorans GN=ahsb4 PE=3 SV=3
Length = 103
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127
I + + G+K ++ + + +++ D+ Y HAK+KTV D+ A+ Q
Sbjct: 35 IRRLARRGGVKRISALIYEETRSVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94
>sp|Q58655|HJA3_METJA Probable archaeal histone 3 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1258 PE=3 SV=1
Length = 67
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 69 VNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAI 124
V + ++AG + + E + I S A HAK+KTV VED+K A+
Sbjct: 10 VRILKKAGAQRVSEAAGKYFAEALEEIALEIARKSVDLAKHAKRKTVKVEDVKAAL 65
>sp|Q55BN9|H33B_DICDI Histone H3.3 type b OS=Dictyostelium discoideum GN=H3b PE=1 SV=1
Length = 136
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 79 NYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
+ +Q + E Y + ED+ + A HAK+ T+ V+DI+LA
Sbjct: 84 RFQAAAIQALQEASEAYLVGLFEDTNLCAIHAKRVTIMVKDIQLA 128
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.126 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,237,317
Number of Sequences: 539616
Number of extensions: 2342413
Number of successful extensions: 5450
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 5232
Number of HSP's gapped (non-prelim): 232
length of query: 182
length of database: 191,569,459
effective HSP length: 110
effective length of query: 72
effective length of database: 132,211,699
effective search space: 9519242328
effective search space used: 9519242328
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)