Query psy8542
Match_columns 182
No_of_seqs 227 out of 423
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 21:33:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8542.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8542hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1taf_A TFIID TBP associated fa 99.9 2.8E-26 9.7E-31 161.6 9.1 68 62-129 1-68 (68)
2 1taf_A TFIID TBP associated fa 99.8 3.7E-20 1.3E-24 130.3 5.6 51 14-64 1-51 (68)
3 3b0c_T CENP-T, centromere prot 99.7 1.3E-16 4.5E-21 121.4 8.5 89 66-157 11-107 (111)
4 1ku5_A HPHA, archaeal histon; 99.6 3.1E-16 1.1E-20 109.6 6.7 59 67-125 11-69 (70)
5 2ly8_A Budding yeast chaperone 99.6 5.2E-15 1.8E-19 114.4 10.2 107 17-133 8-120 (121)
6 2hue_C Histone H4; mini beta s 99.5 1E-14 3.6E-19 105.6 5.8 67 67-133 15-83 (84)
7 1id3_B Histone H4; nucleosome 99.5 4E-14 1.4E-18 106.2 7.6 80 49-132 19-100 (102)
8 2yfw_B Histone H4, H4; cell cy 99.5 6.9E-14 2.4E-18 104.8 7.3 80 50-133 21-102 (103)
9 1tzy_D Histone H4-VI; histone- 99.5 8.4E-14 2.9E-18 104.3 7.6 81 49-133 20-102 (103)
10 3b0b_B CENP-S, centromere prot 99.5 5E-14 1.7E-18 106.8 5.1 60 67-126 24-86 (107)
11 4dra_A Centromere protein S; D 99.4 1.6E-13 5.6E-18 104.9 4.8 60 67-126 32-94 (113)
12 3v9r_A MHF1, uncharacterized p 99.4 5.1E-13 1.8E-17 98.4 5.4 60 66-126 20-79 (90)
13 1f1e_A Histone fold protein; a 99.4 4.7E-12 1.6E-16 101.4 11.1 110 19-128 9-148 (154)
14 2l5a_A Histone H3-like centrom 99.3 7.5E-13 2.6E-17 112.1 4.1 66 68-133 167-234 (235)
15 1taf_B TFIID TBP associated fa 99.3 1.8E-11 6E-16 86.4 8.1 60 66-125 10-69 (70)
16 3vh5_A CENP-S; histone fold, c 99.2 1.4E-11 4.8E-16 97.2 5.1 59 67-126 28-86 (140)
17 1f1e_A Histone fold protein; a 99.1 1.4E-10 4.9E-15 92.7 7.7 63 66-128 8-71 (154)
18 1b67_A Protein (histone HMFA); 99.0 7.6E-10 2.6E-14 76.3 6.8 60 67-126 7-66 (68)
19 1n1j_A NF-YB; histone-like PAI 98.7 2.6E-08 8.7E-13 72.7 6.4 75 66-141 12-88 (93)
20 2hue_B Histone H3; mini beta s 98.6 1E-07 3.4E-12 68.3 8.0 64 66-129 11-75 (77)
21 3nqj_A Histone H3-like centrom 98.6 1.2E-07 4E-12 68.7 8.1 66 65-130 10-78 (82)
22 3b0c_W CENP-W, centromere prot 98.5 2.7E-07 9.4E-12 65.1 7.7 62 66-127 8-70 (76)
23 3nqu_A Histone H3-like centrom 98.4 6.6E-07 2.3E-11 70.5 7.4 85 45-129 41-135 (140)
24 1tzy_C Histone H3; histone-fol 98.4 1.3E-06 4.3E-11 68.6 8.2 65 65-129 69-134 (136)
25 3r45_A Histone H3-like centrom 98.4 8.1E-07 2.8E-11 71.1 7.2 85 45-129 57-151 (156)
26 2yfv_A Histone H3-like centrom 98.3 1.2E-06 4.1E-11 65.5 7.3 62 65-126 34-99 (100)
27 2nqb_C Histone H2A; nucleosome 98.3 1.2E-06 4.2E-11 67.4 7.3 61 66-126 27-88 (123)
28 2f8n_G Core histone macro-H2A. 98.3 1.3E-06 4.4E-11 67.1 7.2 61 66-126 26-87 (120)
29 2byk_B Chrac-14; nucleosome sl 98.3 3.1E-06 1.1E-10 65.5 9.0 77 67-144 14-92 (128)
30 1tzy_A Histone H2A-IV; histone 98.3 1.8E-06 6.1E-11 67.1 7.3 61 66-126 29-90 (129)
31 1n1j_B NF-YC; histone-like PAI 98.3 1.4E-06 4.9E-11 64.1 6.2 67 66-132 23-90 (97)
32 2f8n_K Histone H2A type 1; nuc 98.2 2.2E-06 7.6E-11 68.1 7.1 60 67-126 49-109 (149)
33 1jfi_B DR1 protein, transcript 98.2 4.2E-06 1.4E-10 68.3 8.5 76 66-142 19-95 (179)
34 1id3_C Histone H2A.1; nucleoso 98.2 2.3E-06 7.9E-11 66.6 6.5 61 66-126 29-90 (131)
35 4g92_C HAPE; transcription fac 98.2 3E-06 1E-10 64.7 6.9 95 38-132 17-112 (119)
36 1f66_C Histone H2A.Z; nucleoso 98.2 4.3E-06 1.5E-10 64.8 7.1 61 66-126 31-93 (128)
37 1ku5_A HPHA, archaeal histon; 98.1 1.4E-06 4.9E-11 60.3 3.7 51 12-64 6-56 (70)
38 1jfi_A Transcription regulator 98.1 3.7E-06 1.3E-10 62.1 4.5 67 66-132 15-82 (98)
39 3b0b_B CENP-S, centromere prot 98.0 1.1E-05 3.9E-10 60.8 6.3 56 18-74 27-86 (107)
40 2jss_A Chimera of histone H2B. 98.0 1.7E-05 5.7E-10 64.9 7.6 60 67-126 110-171 (192)
41 4dra_A Centromere protein S; D 97.6 0.00018 6E-09 54.8 6.8 56 18-74 35-94 (113)
42 3v9r_A MHF1, uncharacterized p 97.5 4.1E-05 1.4E-09 56.1 2.3 45 18-63 20-64 (90)
43 2nqb_D Histone H2B; nucleosome 97.4 0.00038 1.3E-08 53.7 7.3 63 66-128 37-100 (123)
44 1tzy_B Histone H2B; histone-fo 97.3 0.00059 2E-08 52.8 7.3 62 67-128 41-103 (126)
45 3vh5_A CENP-S; histone fold, c 97.3 0.00053 1.8E-08 53.9 7.1 72 18-100 27-102 (140)
46 3b0c_T CENP-T, centromere prot 97.2 0.00079 2.7E-08 50.7 6.2 80 11-96 6-89 (111)
47 1h3o_B Transcription initiatio 97.1 0.0028 9.6E-08 45.0 8.5 54 75-128 19-72 (76)
48 2jss_A Chimera of histone H2B. 97.0 0.0028 9.5E-08 51.7 8.6 62 67-128 8-70 (192)
49 2byk_A Chrac-16; nucleosome sl 97.0 0.00089 3.1E-08 52.4 5.3 68 67-134 24-93 (140)
50 2l5a_A Histone H3-like centrom 96.7 0.0027 9.1E-08 53.7 6.3 65 65-129 18-86 (235)
51 2hue_C Histone H4; mini beta s 96.1 0.0038 1.3E-07 44.5 3.4 66 12-79 10-79 (84)
52 1id3_B Histone H4; nucleosome 95.9 0.01 3.6E-07 43.9 4.7 67 12-80 28-98 (102)
53 2yfw_B Histone H4, H4; cell cy 95.8 0.0099 3.4E-07 43.9 4.4 65 12-78 29-97 (103)
54 1tzy_D Histone H4-VI; histone- 95.7 0.012 4E-07 43.4 4.4 67 12-80 29-99 (103)
55 3uk6_A RUVB-like 2; hexameric 92.2 0.79 2.7E-05 38.2 9.2 60 67-127 267-330 (368)
56 2ly8_A Budding yeast chaperone 90.1 2.2 7.7E-05 32.4 9.0 61 65-125 8-78 (121)
57 4dra_E Centromere protein X; D 89.0 2.1 7.2E-05 30.6 7.7 60 64-124 14-77 (84)
58 3bos_A Putative DNA replicatio 88.7 1.5 5.3E-05 33.4 7.3 59 65-125 180-241 (242)
59 1g8p_A Magnesium-chelatase 38 88.0 2.7 9.2E-05 34.5 8.9 54 79-132 267-327 (350)
60 1taf_B TFIID TBP associated fa 86.7 0.61 2.1E-05 32.3 3.5 53 11-65 5-57 (70)
61 2c9o_A RUVB-like 1; hexameric 85.8 3 0.0001 36.7 8.5 65 64-129 367-439 (456)
62 3b0b_C CENP-X, centromere prot 85.2 2.8 9.6E-05 29.7 6.4 60 64-123 10-72 (81)
63 3k1j_A LON protease, ATP-depen 84.1 4.2 0.00014 37.2 8.9 51 76-126 311-374 (604)
64 1bh9_B TAFII28; histone fold, 83.2 9.1 0.00031 27.3 8.5 62 66-127 20-82 (89)
65 2v1u_A Cell division control p 82.1 6.5 0.00022 32.2 8.5 50 78-127 221-276 (387)
66 1h3o_A Transcription initiatio 81.3 2 6.7E-05 30.2 4.2 45 67-111 11-55 (75)
67 3ksy_A SOS-1, SON of sevenless 80.7 4.3 0.00015 40.1 8.0 60 67-126 109-168 (1049)
68 2chg_A Replication factor C sm 79.6 5.5 0.00019 29.4 6.6 56 67-125 169-224 (226)
69 1in4_A RUVB, holliday junction 78.4 5.8 0.0002 33.2 7.1 60 67-127 188-250 (334)
70 2qby_A CDC6 homolog 1, cell di 77.3 15 0.00051 29.9 9.1 50 78-127 217-272 (386)
71 2qby_B CDC6 homolog 3, cell di 76.8 12 0.0004 30.9 8.5 48 78-127 217-270 (384)
72 1fnn_A CDC6P, cell division co 74.2 24 0.00081 28.9 9.7 68 78-145 213-298 (389)
73 2r44_A Uncharacterized protein 71.6 19 0.00066 29.4 8.5 54 79-132 226-302 (331)
74 3fes_A ATP-dependent CLP endop 67.7 10 0.00035 28.0 5.5 32 95-126 85-116 (145)
75 1jr3_D DNA polymerase III, del 66.3 8 0.00027 32.1 5.1 61 66-127 149-209 (343)
76 1njg_A DNA polymerase III subu 65.2 13 0.00046 27.4 5.7 54 66-124 192-248 (250)
77 2i5u_A DNAD domain protein; st 65.0 20 0.00069 24.5 6.2 48 68-115 4-60 (83)
78 1w5s_A Origin recognition comp 62.9 44 0.0015 27.6 9.0 49 79-127 236-293 (412)
79 2keb_A DNA polymerase subunit 62.2 11 0.00036 27.9 4.4 39 9-48 20-58 (101)
80 1h3o_B Transcription initiatio 61.8 18 0.0006 25.2 5.3 45 19-63 10-55 (76)
81 1u5t_A Appears to BE functiona 58.2 33 0.0011 28.4 7.4 82 38-127 41-141 (233)
82 2kpz_A E3 ubiquitin-protein li 57.5 2.4 8.3E-05 26.8 0.2 32 147-178 1-33 (49)
83 3kw6_A 26S protease regulatory 57.3 12 0.00042 24.7 3.8 34 95-128 41-74 (78)
84 2qz4_A Paraplegin; AAA+, SPG7, 56.0 8.3 0.00028 30.0 3.2 63 65-127 183-249 (262)
85 3cuq_A Vacuolar-sorting protei 55.8 54 0.0019 27.2 8.3 83 38-127 21-127 (234)
86 1sxj_D Activator 1 41 kDa subu 55.5 9.4 0.00032 31.1 3.6 58 67-125 200-261 (353)
87 1hqc_A RUVB; extended AAA-ATPa 54.9 30 0.001 27.8 6.5 61 66-127 175-238 (324)
88 1wwi_A Hypothetical protein TT 53.8 13 0.00044 29.2 3.9 52 68-119 8-59 (148)
89 1lv7_A FTSH; alpha/beta domain 52.0 19 0.00064 28.3 4.7 35 93-127 218-252 (257)
90 2keb_A DNA polymerase subunit 51.5 69 0.0024 23.5 8.0 56 64-120 27-85 (101)
91 2y1q_A CLPC N-domain, negative 51.4 65 0.0022 23.2 7.6 33 95-127 83-115 (150)
92 3nqj_A Histone H3-like centrom 48.1 23 0.00078 25.0 4.1 57 17-73 10-76 (82)
93 3skq_A Mitochondrial distribut 46.4 1.3E+02 0.0045 25.2 10.3 116 17-135 32-167 (249)
94 2zc2_A DNAD-like replication p 46.3 10 0.00035 25.4 2.0 53 12-80 18-73 (78)
95 3r45_A Histone H3-like centrom 45.5 25 0.00085 27.8 4.4 57 17-73 84-150 (156)
96 3h4m_A Proteasome-activating n 45.2 27 0.00093 27.6 4.7 60 66-127 195-258 (285)
97 3vlf_B 26S protease regulatory 43.9 30 0.001 23.6 4.2 33 96-128 40-72 (88)
98 3pfi_A Holliday junction ATP-d 43.9 58 0.002 26.4 6.6 61 66-127 191-254 (338)
99 3nqu_A Histone H3-like centrom 43.8 26 0.00087 27.2 4.1 56 17-72 68-133 (140)
100 1k6k_A ATP-dependent CLP prote 43.0 88 0.003 22.3 10.0 30 96-125 84-113 (143)
101 1b67_A Protein (histone HMFA); 42.8 17 0.00058 23.8 2.6 44 20-63 8-51 (68)
102 1ixz_A ATP-dependent metallopr 42.5 19 0.00063 28.3 3.3 31 94-124 223-253 (254)
103 2hue_B Histone H3; mini beta s 42.2 43 0.0015 23.2 4.8 55 17-71 10-72 (77)
104 3aji_B S6C, proteasome (prosom 40.3 39 0.0013 22.4 4.2 33 95-127 39-71 (83)
105 3pvs_A Replication-associated 40.0 33 0.0011 30.3 4.9 49 79-127 191-244 (447)
106 2dzn_B 26S protease regulatory 39.8 28 0.00095 23.3 3.4 32 96-127 37-68 (82)
107 1r4v_A Hypothetical protein AQ 39.3 16 0.00055 29.3 2.4 56 64-119 28-83 (171)
108 1iy2_A ATP-dependent metallopr 38.9 23 0.00078 28.4 3.3 31 94-124 247-277 (278)
109 3nbx_X ATPase RAVA; AAA+ ATPas 37.7 50 0.0017 29.8 5.7 45 79-123 225-282 (500)
110 1tzy_C Histone H3; histone-fol 37.5 49 0.0017 25.4 4.8 56 17-72 69-132 (136)
111 2krk_A 26S protease regulatory 35.0 40 0.0014 23.1 3.6 32 96-127 50-81 (86)
112 2z4s_A Chromosomal replication 33.8 64 0.0022 28.1 5.6 61 66-128 270-333 (440)
113 2yfv_A Histone H3-like centrom 32.9 47 0.0016 24.1 3.9 55 17-71 34-99 (100)
114 3fh2_A Probable ATP-dependent 32.6 56 0.0019 23.8 4.4 33 95-127 85-117 (146)
115 1jr3_A DNA polymerase III subu 30.9 69 0.0024 26.0 5.1 54 66-124 185-241 (373)
116 4h62_V Mediator of RNA polymer 29.7 32 0.0011 19.7 2.0 18 75-92 4-21 (31)
117 2chq_A Replication factor C sm 29.5 70 0.0024 25.2 4.8 55 67-124 169-223 (319)
118 3f8t_A Predicted ATPase involv 28.2 47 0.0016 30.7 3.9 28 98-125 454-481 (506)
119 1khy_A CLPB protein; alpha hel 28.0 63 0.0022 23.1 3.9 30 96-125 87-116 (148)
120 3f9v_A Minichromosome maintena 26.9 33 0.0011 31.5 2.6 31 96-126 556-586 (595)
121 3zri_A CLPB protein, CLPV; cha 25.2 73 0.0025 24.5 4.0 30 96-125 103-133 (171)
122 3kp1_E D-ornithine aminomutase 24.5 55 0.0019 24.8 3.0 36 34-84 31-66 (121)
123 3hqi_A Speckle-type POZ protei 24.3 1E+02 0.0034 25.0 4.9 20 28-47 217-236 (312)
124 1sxj_B Activator 1 37 kDa subu 23.9 1.9E+02 0.0064 22.7 6.4 53 67-125 174-229 (323)
125 1ofh_A ATP-dependent HSL prote 22.5 1.2E+02 0.0042 23.6 5.0 53 74-126 228-298 (310)
126 2r62_A Cell division protease 22.5 34 0.0012 26.8 1.6 33 94-126 220-252 (268)
127 2gqc_A Rhomboid intramembrane 22.1 31 0.0011 23.0 1.1 19 12-30 10-28 (70)
128 4b4t_H 26S protease regulatory 22.1 1.2E+02 0.0042 27.5 5.4 35 93-127 416-450 (467)
129 3rq9_A TSI2, type VI secretion 21.8 45 0.0015 23.5 1.9 27 117-144 48-74 (85)
130 4b4t_I 26S protease regulatory 21.5 1.4E+02 0.0047 26.9 5.5 34 93-126 389-422 (437)
131 2ll0_A Uncharacterized protein 21.4 1.1E+02 0.0036 22.5 4.0 40 61-100 62-101 (104)
132 4b4t_J 26S protease regulatory 21.3 1.4E+02 0.0048 26.4 5.5 34 94-127 356-389 (405)
133 3m00_A Aristolochene synthase; 20.9 1E+02 0.0035 28.5 4.7 58 22-88 74-131 (550)
134 1iqp_A RFCS; clamp loader, ext 20.8 1.2E+02 0.0042 23.8 4.6 54 67-123 177-230 (327)
135 1r6b_X CLPA protein; AAA+, N-t 20.4 3.7E+02 0.013 24.6 8.5 50 79-128 372-434 (758)
136 1sxj_A Activator 1 95 kDa subu 20.2 89 0.003 27.7 4.0 56 67-125 217-272 (516)
137 2lbf_A 60S acidic ribosomal pr 20.1 73 0.0025 21.4 2.7 45 42-91 6-50 (69)
No 1
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.93 E-value=2.8e-26 Score=161.62 Aligned_cols=68 Identities=49% Similarity=0.884 Sum_probs=66.1
Q ss_pred hhhHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q psy8542 62 ARDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQLS 129 (182)
Q Consensus 62 ardaqlI~rIlk~~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~~ 129 (182)
|+|+++|.+||+++|+++|||+|+.||+||+|||+.+|++||..||+||||+||+++||+|||++|++
T Consensus 1 Prda~~i~~iLk~~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~~ 68 (68)
T 1taf_A 1 PKDAQVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVTLD 68 (68)
T ss_dssp CHHHHHHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC-
T ss_pred CchhHHHHHHHHHCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999864
No 2
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.80 E-value=3.7e-20 Score=130.32 Aligned_cols=51 Identities=53% Similarity=0.983 Sum_probs=49.9
Q ss_pred CchHHHHHHHHHHcCCCccChHHHHHHHHHHHhhhcccccccHhhhhhhhh
Q psy8542 14 PRDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHARD 64 (182)
Q Consensus 14 prda~~i~~il~~~gi~~yep~v~~qll~f~yryt~~vL~DA~vys~hard 64 (182)
|||+++|+.||++|||++|+|+|++|||||+|||+++||+||..||+||+.
T Consensus 1 Prda~~i~~iLk~~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgr 51 (68)
T 1taf_A 1 PKDAQVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARK 51 (68)
T ss_dssp CHHHHHHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CchhHHHHHHHHHCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999973
No 3
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.67 E-value=1.3e-16 Score=121.39 Aligned_cols=89 Identities=21% Similarity=0.203 Sum_probs=74.8
Q ss_pred HHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCC--------CC
Q psy8542 66 QVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQLSGSFAKP--------PP 137 (182)
Q Consensus 66 qlI~rIlk~~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~~~~F~~p--------pp 137 (182)
..|++|+++.|+.++|++++.+|.++++.|+..|++||..||+|||||||+++||++|++....-.|..| +|
T Consensus 11 a~I~Ri~r~~g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~l~~l~~~~lp 90 (111)
T 3b0c_T 11 SLIKQIFSHYVKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMPLHVLVERHLP 90 (111)
T ss_dssp HHHHHHHHHHHCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBCHHHHHHHHSC
T ss_pred HHHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCccccccHHHHHHHhCc
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hhhhhccccccCCcccccCC
Q psy8542 138 RESKGSGQAGAMGSNAHNKA 157 (182)
Q Consensus 138 ke~Ll~lA~~~~~~~~~N~~ 157 (182)
+|.+..+- ......|++
T Consensus 91 ~E~~~~l~---~~a~~~n~~ 107 (111)
T 3b0c_T 91 LEYRKLLI---PIAVSGNKV 107 (111)
T ss_dssp HHHHHHHC---CC-------
T ss_pred HHHHHHhc---cccccCCcc
Confidence 99555442 111566654
No 4
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.64 E-value=3.1e-16 Score=109.64 Aligned_cols=59 Identities=32% Similarity=0.543 Sum_probs=57.8
Q ss_pred HHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHH
Q psy8542 67 VIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAIT 125 (182)
Q Consensus 67 lI~rIlk~~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~ 125 (182)
.|.||++++|+.++|++++.+|.|++++|+.+|++||..||+||||+||+.+||++|++
T Consensus 11 ~v~Rl~r~~g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 11 PVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHcCcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999986
No 5
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=5.2e-15 Score=114.39 Aligned_cols=107 Identities=21% Similarity=0.317 Sum_probs=97.2
Q ss_pred HHHHHHHHHHcC----CCccChHHHHHHHHHHHhhhcccccccHhhhhhhhhHHHHHHHHHhcCCcccChHHHHHHHHHH
Q psy8542 17 AQVIVNMFQEAG----IKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHARDAQVIVNMFQEAGIKNYDPRCVQQMLEFV 92 (182)
Q Consensus 17 a~~i~~il~~~g----i~~yep~v~~qll~f~yryt~~vL~DA~vys~hardaqlI~rIlk~~Gv~r~sp~v~~qLle~~ 92 (182)
.|++..|..+.. ---|++..+.-|=|-+=-|-.+.++|+...+-|+ ..+||+|+|.+++.++.+.+
T Consensus 8 ~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA----------~~gGvkRIS~~iy~e~r~vl 77 (121)
T 2ly8_A 8 ARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHL----------VPRGSKRISGLIYEEVRAVL 77 (121)
T ss_dssp HHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----------CCCCSSCCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcC----------CccCccchhHHHHHHHHHHH
Confidence 577888877763 3469999999999999999999999999999999 67899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh--cCCCCC
Q psy8542 93 NNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ--LSGSFA 133 (182)
Q Consensus 93 ~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r--~~~~F~ 133 (182)
+.|..+|++||+.|++|||||||+++||.+|++.+ .-|.|.
T Consensus 78 ~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~lygf~ 120 (121)
T 2ly8_A 78 KSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFG 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGGGGCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcCCCCC
Confidence 99999999999999999999999999999999975 447765
No 6
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.52 E-value=1e-14 Score=105.58 Aligned_cols=67 Identities=22% Similarity=0.362 Sum_probs=62.0
Q ss_pred HHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh--cCCCCC
Q psy8542 67 VIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ--LSGSFA 133 (182)
Q Consensus 67 lI~rIlk~~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r--~~~~F~ 133 (182)
.|++|+++.|++++|++++.+|.+.++.|+.+|++||..|++|||||||+++||.+|++.+ ..|.|.
T Consensus 15 ~I~Riar~~Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lYgf~ 83 (84)
T 2hue_C 15 AIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 83 (84)
T ss_dssp HHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEESCC
T ss_pred HHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCCCCC
Confidence 5899999999999999999999999999999999999999999999999999999999865 335553
No 7
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.50 E-value=4e-14 Score=106.20 Aligned_cols=80 Identities=24% Similarity=0.342 Sum_probs=66.6
Q ss_pred cccccccHhhhhhhhhHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhc
Q psy8542 49 TTILEDSRVYANHARDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQL 128 (182)
Q Consensus 49 ~~vL~DA~vys~hardaqlI~rIlk~~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~ 128 (182)
..+|.|...+ .|.. .|++|+++.|++++|++++.+|.+.++.|+.+|++||..|++||+|+||+++||.+|++.+.
T Consensus 19 ~k~~r~~i~~--ip~~--~I~Rlar~~Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g 94 (102)
T 1id3_B 19 RKILRDNIQG--ITKP--AIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 94 (102)
T ss_dssp -----CCGGG--SCHH--HHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred HHHHHhccCC--CCHH--HHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 4566777665 3443 59999999999999999999999999999999999999999999999999999999999763
Q ss_pred --CCCC
Q psy8542 129 --SGSF 132 (182)
Q Consensus 129 --~~~F 132 (182)
.|.|
T Consensus 95 ~~lYGf 100 (102)
T 1id3_B 95 RTLYGF 100 (102)
T ss_dssp CCEESS
T ss_pred CCCCCC
Confidence 3555
No 8
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.48 E-value=6.9e-14 Score=104.80 Aligned_cols=80 Identities=23% Similarity=0.352 Sum_probs=61.6
Q ss_pred ccccccHhhhhhhhhHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q psy8542 50 TILEDSRVYANHARDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQLS 129 (182)
Q Consensus 50 ~vL~DA~vys~hardaqlI~rIlk~~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~~ 129 (182)
.+|.|+..+ .|. ..|++|+++.|++++|++++.+|.++++.|+.+|++||..||+|++|+||+.+||.+|++....
T Consensus 21 ~~~r~~~~g--ip~--~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~ 96 (103)
T 2yfw_B 21 KILRDNIQG--ITK--PAIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGR 96 (103)
T ss_dssp -----------CCH--HHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred hhhhhhhcc--CCH--HHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 455555555 343 3599999999999999999999999999999999999999999999999999999999997643
Q ss_pred --CCCC
Q psy8542 130 --GSFA 133 (182)
Q Consensus 130 --~~F~ 133 (182)
|.|.
T Consensus 97 ~lYGf~ 102 (103)
T 2yfw_B 97 TLYGFG 102 (103)
T ss_dssp ------
T ss_pred CCcCCC
Confidence 6663
No 9
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.47 E-value=8.4e-14 Score=104.26 Aligned_cols=81 Identities=21% Similarity=0.318 Sum_probs=70.3
Q ss_pred cccccccHhhhhhhhhHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhc
Q psy8542 49 TTILEDSRVYANHARDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQL 128 (182)
Q Consensus 49 ~~vL~DA~vys~hardaqlI~rIlk~~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~ 128 (182)
..++.|+..+ .|.. .|++|+++.|+++++++++.+|.++++.|+.+|++||..||+|++|+||+.+||.+|++...
T Consensus 20 ~k~~r~~~~g--ip~~--~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g 95 (103)
T 1tzy_D 20 RKVLRDNIQG--ITKP--AIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 95 (103)
T ss_dssp -CCCCCGGGG--SCHH--HHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred ccchhhhccc--CCHH--HHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcC
Confidence 3566666665 4443 59999999999999999999999999999999999999999999999999999999999764
Q ss_pred C--CCCC
Q psy8542 129 S--GSFA 133 (182)
Q Consensus 129 ~--~~F~ 133 (182)
. |.|.
T Consensus 96 ~~lYGf~ 102 (103)
T 1tzy_D 96 RTLYGFG 102 (103)
T ss_dssp CEEESCC
T ss_pred CCCcCCC
Confidence 3 6664
No 10
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=99.45 E-value=5e-14 Score=106.82 Aligned_cols=60 Identities=22% Similarity=0.294 Sum_probs=55.6
Q ss_pred HHHHHHHhcCC---cccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q psy8542 67 VIVNMFQEAGI---KNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126 (182)
Q Consensus 67 lI~rIlk~~Gv---~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~ 126 (182)
.|.+|.++.|. .+|||+++.+|.|++++|+.+|++|+..||.|||||||+.+||+||++.
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 47777877777 6899999999999999999999999999999999999999999999964
No 11
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=99.40 E-value=1.6e-13 Score=104.86 Aligned_cols=60 Identities=20% Similarity=0.403 Sum_probs=57.1
Q ss_pred HHHHHHHhcCCcc---cChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q psy8542 67 VIVNMFQEAGIKN---YDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126 (182)
Q Consensus 67 lI~rIlk~~Gv~r---~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~ 126 (182)
.|.+|+++.|.++ +||+++.+|.|++++|+.++++|+..||+|||||||+.+||+|+++.
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 5888999988888 99999999999999999999999999999999999999999999964
No 12
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=99.37 E-value=5.1e-13 Score=98.45 Aligned_cols=60 Identities=22% Similarity=0.403 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q psy8542 66 QVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126 (182)
Q Consensus 66 qlI~rIlk~~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~ 126 (182)
+++...+++.|+ .+||+++.+|.|++|+|+.++++|+..||+|||||||+.+||+|+++.
T Consensus 20 ki~~e~~~~~g~-~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 20 ERLQQVLSSEDI-KYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHSCSSCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHhcCc-eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 445555555676 599999999999999999999999999999999999999999999864
No 13
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.36 E-value=4.7e-12 Score=101.36 Aligned_cols=110 Identities=19% Similarity=0.328 Sum_probs=97.3
Q ss_pred HHHHHHHHc-CCCccChHHHHHHHHHHHhhhcccccccHhhhhhhh-------hH----------------------HHH
Q psy8542 19 VIVNMFQEA-GIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAR-------DA----------------------QVI 68 (182)
Q Consensus 19 ~i~~il~~~-gi~~yep~v~~qll~f~yryt~~vL~DA~vys~har-------da----------------------qlI 68 (182)
.|.-|++.- |..--....-.-|-+..=-|...+..+|..|+.|++ |. ..|
T Consensus 9 ~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d~~~l~lP~a~V 88 (154)
T 1f1e_A 9 AIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVEDYDGELFGRATV 88 (154)
T ss_dssp HHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTTCCSCCCCHHHH
T ss_pred HHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCccccccCCccHH
Confidence 456677776 887777777778888888888899999999999976 33 159
Q ss_pred HHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhc
Q psy8542 69 VNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQL 128 (182)
Q Consensus 69 ~rIlk~~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~ 128 (182)
.||+++.|+.++|.+++..|.+.++.|+..|+++|..||+|+|||||+.+||.+|++...
T Consensus 89 ~Ri~k~~g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~ 148 (154)
T 1f1e_A 89 RRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSM 148 (154)
T ss_dssp HHHHHHTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHS
T ss_pred HHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999998754
No 14
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=99.31 E-value=7.5e-13 Score=112.09 Aligned_cols=66 Identities=23% Similarity=0.321 Sum_probs=61.2
Q ss_pred HHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh--cCCCCC
Q psy8542 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ--LSGSFA 133 (182)
Q Consensus 68 I~rIlk~~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r--~~~~F~ 133 (182)
+.||++++||+|+|..++.++.+.++.|..+|++||+.|++|||||||+++||.+|++.. .-|.|.
T Consensus 167 ~~RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~gr~lYGf~ 234 (235)
T 2l5a_A 167 DEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFG 234 (235)
T ss_dssp CCTTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcCCccccCC
Confidence 348889999999999999999999999999999999999999999999999999999964 557775
No 15
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.26 E-value=1.8e-11 Score=86.45 Aligned_cols=60 Identities=20% Similarity=0.386 Sum_probs=58.1
Q ss_pred HHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHH
Q psy8542 66 QVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAIT 125 (182)
Q Consensus 66 qlI~rIlk~~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~ 125 (182)
..|.+|+++.|++++++++...|.+-++.++.+|+++|..++.|+||+|++.+||.+|++
T Consensus 10 ~~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 10 ESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 468999999999999999999999999999999999999999999999999999999984
No 16
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=99.19 E-value=1.4e-11 Score=97.18 Aligned_cols=59 Identities=22% Similarity=0.405 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q psy8542 67 VIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126 (182)
Q Consensus 67 lI~rIlk~~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~ 126 (182)
++.....+.|++ +||+++.+|.|++|+|+.++++|+..||.||||+||+.+||+|+++.
T Consensus 28 Ivee~~~~~~~~-vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 28 LAQDVAEDKGVL-FSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHTCE-ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHhcCCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 333333444543 99999999999999999999999999999999999999999999974
No 17
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.11 E-value=1.4e-10 Score=92.74 Aligned_cols=63 Identities=16% Similarity=0.275 Sum_probs=60.2
Q ss_pred HHHHHHHHhc-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhc
Q psy8542 66 QVIVNMFQEA-GIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQL 128 (182)
Q Consensus 66 qlI~rIlk~~-Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~ 128 (182)
..|.||+|++ |+.++|.++...|.+.++.|+..|.++|..+|+|+|||||+++||+.|...++
T Consensus 8 a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg 71 (154)
T 1f1e_A 8 AAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLM 71 (154)
T ss_dssp HHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHT
T ss_pred cHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcc
Confidence 4689999999 99999999999999999999999999999999999999999999999997764
No 18
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.00 E-value=7.6e-10 Score=76.31 Aligned_cols=60 Identities=23% Similarity=0.311 Sum_probs=57.0
Q ss_pred HHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q psy8542 67 VIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126 (182)
Q Consensus 67 lI~rIlk~~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~ 126 (182)
.+.||+++.|..+++.+++..|.+.++.|+..+.+||..+|.|+||+||+.+||.+|++.
T Consensus 7 ~v~Ri~k~~~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 7 PIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred HHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 578889888999999999999999999999999999999999999999999999999853
No 19
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.70 E-value=2.6e-08 Score=72.71 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=62.9
Q ss_pred HHHHHHHHhcCC--cccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCChhhh
Q psy8542 66 QVIVNMFQEAGI--KNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQLSGSFAKPPPRESK 141 (182)
Q Consensus 66 qlI~rIlk~~Gv--~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~~~~F~~pppke~L 141 (182)
..|.+|+|+.|- .+++.++...|.+.++.|+..+..+|..+|.|+||+||+.+||..|++ +.++.-.-+|-+++|
T Consensus 12 a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~-~l~F~~~i~~~~~~l 88 (93)
T 1n1j_A 12 ANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS-TLGFDSYVEPLKLYL 88 (93)
T ss_dssp HHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH-HTTCGGGHHHHHHHH
T ss_pred hHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH-HcCcHhhHHHHHHHH
Confidence 358899998865 799999999999999999999999999999999999999999999997 444333334444444
No 20
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.65 E-value=1e-07 Score=68.28 Aligned_cols=64 Identities=23% Similarity=0.318 Sum_probs=57.6
Q ss_pred HHHHHHHHh-cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q psy8542 66 QVIVNMFQE-AGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQLS 129 (182)
Q Consensus 66 qlI~rIlk~-~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~~ 129 (182)
++++.|..+ .|..|++..++..|-|.+|.|..++.+||...|.||||+||...||+||.+.|+.
T Consensus 11 RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 75 (77)
T 2hue_B 11 RLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 75 (77)
T ss_dssp HHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCc
Confidence 566666654 3778999999999999999999999999999999999999999999999988764
No 21
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.64 E-value=1.2e-07 Score=68.73 Aligned_cols=66 Identities=15% Similarity=0.168 Sum_probs=57.5
Q ss_pred HHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCC
Q psy8542 65 AQVIVNMFQEA---GIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQLSG 130 (182)
Q Consensus 65 aqlI~rIlk~~---Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~~~ 130 (182)
.++++.|..+. +..|+++.++..|-|.+|.|..++.+||...|.||||+||...||+||..-|+.+
T Consensus 10 ~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~~ 78 (82)
T 3nqj_A 10 SRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 78 (82)
T ss_dssp HHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcccc
Confidence 46777777553 2579999999999999999999999999999999999999999999999888753
No 22
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.54 E-value=2.7e-07 Score=65.09 Aligned_cols=62 Identities=11% Similarity=0.017 Sum_probs=56.9
Q ss_pred HHHHHHHHhc-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh
Q psy8542 66 QVIVNMFQEA-GIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127 (182)
Q Consensus 66 qlI~rIlk~~-Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r 127 (182)
..|.+|+++. +-.++|.++...+.++++.|...+..+|...|.|+||+||+.+||..|++..
T Consensus 8 A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 8 GTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp HHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred cHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3578999954 7778999999999999999999999999999999999999999999999864
No 23
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.40 E-value=6.6e-07 Score=70.54 Aligned_cols=85 Identities=14% Similarity=0.144 Sum_probs=58.5
Q ss_pred HhhhcccccccHhhhhhhh-------hHHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy8542 45 NNYTTTILEDSRVYANHAR-------DAQVIVNMFQEA---GIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKT 114 (182)
Q Consensus 45 yryt~~vL~DA~vys~har-------daqlI~rIlk~~---Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRkt 114 (182)
+||-..+|..-..|-.... =.++|+.|..+. ...+++..++..|-|.+|.|..++.+||...|-||+|.|
T Consensus 41 ~r~rpg~LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVT 120 (140)
T 3nqu_A 41 SRRRQGWLKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT 120 (140)
T ss_dssp ------------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred CCCCCccHHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 3444444666666644432 346788887653 257999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcC
Q psy8542 115 VDVEDIKLAITNQLS 129 (182)
Q Consensus 115 I~~eDVrLAI~~r~~ 129 (182)
|...||+||...|+.
T Consensus 121 Im~kDiqLArrirg~ 135 (140)
T 3nqu_A 121 LFPKDVQLARRIRGL 135 (140)
T ss_dssp ECHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHhccc
Confidence 999999999988765
No 24
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.37 E-value=1.3e-06 Score=68.64 Aligned_cols=65 Identities=23% Similarity=0.294 Sum_probs=58.8
Q ss_pred HHHHHHHHHhc-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q psy8542 65 AQVIVNMFQEA-GIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQLS 129 (182)
Q Consensus 65 aqlI~rIlk~~-Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~~ 129 (182)
.++|+.|..+. |.-+++..++..|-|.+|.|..++.+|+...|-||||.||...||+||...|+.
T Consensus 69 ~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 134 (136)
T 1tzy_C 69 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
T ss_dssp HHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCc
Confidence 46777776643 778999999999999999999999999999999999999999999999988764
No 25
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.37 E-value=8.1e-07 Score=71.12 Aligned_cols=85 Identities=14% Similarity=0.152 Sum_probs=58.8
Q ss_pred HhhhcccccccHhhhhhhh-------hHHHHHHHHHhcC---CcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy8542 45 NNYTTTILEDSRVYANHAR-------DAQVIVNMFQEAG---IKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKT 114 (182)
Q Consensus 45 yryt~~vL~DA~vys~har-------daqlI~rIlk~~G---v~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRkt 114 (182)
+||-..+|..-..|-.... =.++|+.|..+.. ..+++..++..|-|.+|.|..++.+||...|-||+|.|
T Consensus 57 ~r~rpg~LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVT 136 (156)
T 3r45_A 57 SRRRQGWLKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT 136 (156)
T ss_dssp ------------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred CCCCCchHHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 4554445666666654432 2467888876543 56999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcC
Q psy8542 115 VDVEDIKLAITNQLS 129 (182)
Q Consensus 115 I~~eDVrLAI~~r~~ 129 (182)
|...||+||...|+.
T Consensus 137 Im~kDIqLArrIrg~ 151 (156)
T 3r45_A 137 LFPKDVQLARRIRGL 151 (156)
T ss_dssp ECHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccc
Confidence 999999999987753
No 26
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=98.35 E-value=1.2e-06 Score=65.50 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcC----CcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q psy8542 65 AQVIVNMFQEAG----IKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126 (182)
Q Consensus 65 aqlI~rIlk~~G----v~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~ 126 (182)
.++|+.|..+.. .-+++..++..|-|.+|.|..++.+||...|-||||.||...||+||..-
T Consensus 34 ~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 99 (100)
T 2yfv_A 34 ARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRI 99 (100)
T ss_dssp HHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred HHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence 367777776532 67999999999999999999999999999999999999999999999753
No 27
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.33 E-value=1.2e-06 Score=67.44 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=57.9
Q ss_pred HHHHHHHHhc-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q psy8542 66 QVIVNMFQEA-GIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126 (182)
Q Consensus 66 qlI~rIlk~~-Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~ 126 (182)
.-|+|+|++. ++.|++..++..|...+|.++.+|++.|..+|.|+++++|+.+||++||+.
T Consensus 27 ~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 27 GRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp HHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 3688999986 999999999999999999999999999999999999999999999999984
No 28
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.32 E-value=1.3e-06 Score=67.09 Aligned_cols=61 Identities=21% Similarity=0.157 Sum_probs=58.1
Q ss_pred HHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q psy8542 66 QVIVNMFQEAG-IKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126 (182)
Q Consensus 66 qlI~rIlk~~G-v~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~ 126 (182)
.-|+|+|++.+ +.|++..+...|...+|.++.+|++.|..+|.|+|+++|+.+||++||+.
T Consensus 26 ~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 26 GRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp HHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 36899999998 89999999999999999999999999999999999999999999999974
No 29
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=98.30 E-value=3.1e-06 Score=65.45 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=67.6
Q ss_pred HHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCChhhhhcc
Q psy8542 67 VIVNMFQEAG--IKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQLSGSFAKPPPRESKGSG 144 (182)
Q Consensus 67 lI~rIlk~~G--v~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~~~~F~~pppke~Ll~l 144 (182)
.|.+|+++.+ ..+++.++...|.+.++-|+..+...|...|.|.+|+||+.+||..|++....+.|-. |-+++|-+.
T Consensus 14 ~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~-~lk~~l~~y 92 (128)
T 2byk_B 14 VIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVP-SLTQDLEVY 92 (128)
T ss_dssp HHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHH-HHHHHHHHH
T ss_pred HHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHHH-HHHHHHHHH
Confidence 5899999765 8899999999999999999999999999999999999999999999999887777764 455555544
No 30
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.29 E-value=1.8e-06 Score=67.06 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=57.8
Q ss_pred HHHHHHHHhc-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q psy8542 66 QVIVNMFQEA-GIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126 (182)
Q Consensus 66 qlI~rIlk~~-Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~ 126 (182)
.-|+|+|++. ++.|++..++..|...+|.++.+|++.|..+|.|+++++|+.+||++||+.
T Consensus 29 ~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 29 GRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp HHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 3688999985 999999999999999999999999999999999999999999999999984
No 31
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.27 E-value=1.4e-06 Score=64.05 Aligned_cols=67 Identities=16% Similarity=0.151 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCC-cccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCC
Q psy8542 66 QVIVNMFQEAGI-KNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQLSGSF 132 (182)
Q Consensus 66 qlI~rIlk~~Gv-~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~~~~F 132 (182)
.-|++|++..+- .+++.+++..+-..++.|+.++++.|...|.+.+|+||+.+||.+|++.--.+.|
T Consensus 23 arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~F 90 (97)
T 1n1j_B 23 ARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDF 90 (97)
T ss_dssp HHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGG
T ss_pred HHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHH
Confidence 368999997654 7899999999999999999999999999999999999999999999986555544
No 32
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.24 E-value=2.2e-06 Score=68.14 Aligned_cols=60 Identities=18% Similarity=0.179 Sum_probs=57.6
Q ss_pred HHHHHHHhc-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q psy8542 67 VIVNMFQEA-GIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126 (182)
Q Consensus 67 lI~rIlk~~-Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~ 126 (182)
-|.|+|++. ++.|++..++..|...+|.++.+|++-|..+|.++++++|+.+||++||+.
T Consensus 49 rI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 49 RVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp HHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 689999986 999999999999999999999999999999999999999999999999984
No 33
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.22 E-value=4.2e-06 Score=68.34 Aligned_cols=76 Identities=17% Similarity=0.195 Sum_probs=65.3
Q ss_pred HHHHHHHHhcCC-cccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCChhhhh
Q psy8542 66 QVIVNMFQEAGI-KNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQLSGSFAKPPPRESKG 142 (182)
Q Consensus 66 qlI~rIlk~~Gv-~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~~~~F~~pppke~Ll 142 (182)
..|.||+|+.+- .+++.++...|.+.+..|+..|...|...|.|.|||||+.+||..|++......|.. |-+++|-
T Consensus 19 A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv~-~lk~~L~ 95 (179)
T 1jfi_B 19 AAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYIS-EVKEVLQ 95 (179)
T ss_dssp HHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGHH-HHHHHHH
T ss_pred HHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHHH-HHHHHHH
Confidence 468999999874 799999999999999999999999999999999999999999999998665555543 4444443
No 34
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.21 E-value=2.3e-06 Score=66.57 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=57.7
Q ss_pred HHHHHHHHhc-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q psy8542 66 QVIVNMFQEA-GIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126 (182)
Q Consensus 66 qlI~rIlk~~-Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~ 126 (182)
.-|+|+|++. ++.|++..++..|...++.++.+|++-|..+|.|+++++|+.+||++||+.
T Consensus 29 ~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 29 GRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp HHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 4688999985 999999999999999999999999999999999999999999999999984
No 35
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=98.21 E-value=3e-06 Score=64.69 Aligned_cols=95 Identities=14% Similarity=0.180 Sum_probs=79.5
Q ss_pred HHHHHHHHhhhcccccccHhhhhhhhhHHHHHHHHH-hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q psy8542 38 QQMLEFVNNYTTTILEDSRVYANHARDAQVIVNMFQ-EAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVD 116 (182)
Q Consensus 38 ~qll~f~yryt~~vL~DA~vys~hardaqlI~rIlk-~~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~ 116 (182)
.+|-+||-+...++-.+..-+..|-=-..-|++|+| +..+.+++.+++..+-..++-++.++++.|...|...+|+||+
T Consensus 17 ~~l~~fw~~~~~~~e~~~~d~k~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~ 96 (119)
T 4g92_C 17 DILTTYWQHVINHLESDNHDYKIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQ 96 (119)
T ss_dssp HHHHHHHHHHHHHHTCSCCCSSCCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred HHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccC
Confidence 688999999888776665555555333456888998 4688899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCC
Q psy8542 117 VEDIKLAITNQLSGSF 132 (182)
Q Consensus 117 ~eDVrLAI~~r~~~~F 132 (182)
.+||..||+.--.+.|
T Consensus 97 ~~di~~Av~~~e~~dF 112 (119)
T 4g92_C 97 RSDIAAALSKSDMFDF 112 (119)
T ss_dssp HHHHHHHHTTCGGGGG
T ss_pred HHHHHHHHhcCchhhH
Confidence 9999999976555444
No 36
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.16 E-value=4.3e-06 Score=64.82 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=57.3
Q ss_pred HHHHHHHHhcC-C-cccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q psy8542 66 QVIVNMFQEAG-I-KNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126 (182)
Q Consensus 66 qlI~rIlk~~G-v-~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~ 126 (182)
.-|+|+|++.+ + .|++..+...|...+|.++.+|++-|..+|.|.|+++|+.+||++||+.
T Consensus 31 ~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 31 GRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp HHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 36899999998 4 4999999999999999999999999999999999999999999999984
No 37
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.15 E-value=1.4e-06 Score=60.26 Aligned_cols=51 Identities=20% Similarity=0.421 Sum_probs=47.4
Q ss_pred CCCchHHHHHHHHHHcCCCccChHHHHHHHHHHHhhhcccccccHhhhhhhhh
Q psy8542 12 KLPRDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHARD 64 (182)
Q Consensus 12 ~~prda~~i~~il~~~gi~~yep~v~~qll~f~yryt~~vL~DA~vys~hard 64 (182)
.+|+. .|.-|+++.|+..+++.++.+|.|+.++|+..+++||..|+.|++.
T Consensus 6 ~lp~a--~v~Rl~r~~g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakR 56 (70)
T 1ku5_A 6 ELPIA--PVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGR 56 (70)
T ss_dssp CSCHH--HHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCChH--HHHHHHHHcCcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46765 7899999999999999999999999999999999999999999974
No 38
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.05 E-value=3.7e-06 Score=62.05 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=52.9
Q ss_pred HHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCC
Q psy8542 66 QVIVNMFQEAG-IKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQLSGSF 132 (182)
Q Consensus 66 qlI~rIlk~~G-v~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~~~~F 132 (182)
.-|++|++..+ +.+++.+++..+-..++-|+.++++.|...|.+.||+||+.+||.+||+.--.+.|
T Consensus 15 aRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~F 82 (98)
T 1jfi_A 15 ARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAA 82 (98)
T ss_dssp HHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-------
T ss_pred HHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhH
Confidence 35889999754 48999999999999999999999999999999999999999999999987555544
No 39
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=97.99 E-value=1.1e-05 Score=60.82 Aligned_cols=56 Identities=13% Similarity=0.256 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCCccChHHHHHHHHHHHhhhcccccccHhhhhhhh----hHHHHHHHHHh
Q psy8542 18 QVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAR----DAQVIVNMFQE 74 (182)
Q Consensus 18 ~~i~~il~~~gi~~yep~v~~qll~f~yryt~~vL~DA~vys~har----daqlI~rIlk~ 74 (182)
|++....+++|+ .|+|+++.+|.||.|+|+.++..|+..|+.||+ +..-|...+++
T Consensus 27 rI~~~~g~~~~~-~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 27 CLCQDVAEDKGV-LFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHHTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHhhhcCC-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 555566666666 799999999999999999999999999999998 33445555554
No 40
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.98 E-value=1.7e-05 Score=64.93 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=56.2
Q ss_pred HHHHHHHhc-CC-cccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q psy8542 67 VIVNMFQEA-GI-KNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126 (182)
Q Consensus 67 lI~rIlk~~-Gv-~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~ 126 (182)
-|+|++++. ++ .|++..++..|...++.++.+|++-|..+|.|+|+++|+.+||++||+.
T Consensus 110 ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 110 RIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp HHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred HHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 588999986 66 5999999999999999999999999999999999999999999999973
No 41
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=97.57 E-value=0.00018 Score=54.84 Aligned_cols=56 Identities=9% Similarity=0.225 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCCccChHHHHHHHHHHHhhhcccccccHhhhhhhh----hHHHHHHHHHh
Q psy8542 18 QVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAR----DAQVIVNMFQE 74 (182)
Q Consensus 18 ~~i~~il~~~gi~~yep~v~~qll~f~yryt~~vL~DA~vys~har----daqlI~rIlk~ 74 (182)
|++....++.|++ +.|+++.+|.|+.|+|..++.+|+..|+.||+ ++.-|...+++
T Consensus 35 rIvke~gaer~~~-vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 35 CLCEEVALDKEMQ-FSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp HHHHHHHHHHTCC-BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHcCCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 4555555666665 99999999999999999999999999999998 33445555554
No 42
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=4.1e-05 Score=56.13 Aligned_cols=45 Identities=22% Similarity=0.412 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCCccChHHHHHHHHHHHhhhcccccccHhhhhhhh
Q psy8542 18 QVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAR 63 (182)
Q Consensus 18 ~~i~~il~~~gi~~yep~v~~qll~f~yryt~~vL~DA~vys~har 63 (182)
++....++++|+ ++.|+++.+|.|+.|+|..++.+|+..|+.||+
T Consensus 20 ki~~e~~~~~g~-~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAg 64 (90)
T 3v9r_A 20 ERLQQVLSSEDI-KYTPRFINSLLELAYLQLGEMGSDLQAFARHAG 64 (90)
T ss_dssp HHHHHHSCSSCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCc-eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455566677787 599999999999999999999999999999997
No 43
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=97.44 E-value=0.00038 Score=53.68 Aligned_cols=63 Identities=19% Similarity=0.268 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCc-ccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhc
Q psy8542 66 QVIVNMFQEAGIK-NYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQL 128 (182)
Q Consensus 66 qlI~rIlk~~Gv~-r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~ 128 (182)
.-|.++|++.+-. .+|.++...|.-|++.....|+.+|..++.|++|+||+..||+.|+.-.+
T Consensus 37 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlL 100 (123)
T 2nqb_D 37 IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLL 100 (123)
T ss_dssp HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhC
Confidence 3589999998866 79999999999999999999999999999999999999999999997554
No 44
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=97.34 E-value=0.00059 Score=52.84 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=57.7
Q ss_pred HHHHHHHhcCCc-ccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhc
Q psy8542 67 VIVNMFQEAGIK-NYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQL 128 (182)
Q Consensus 67 lI~rIlk~~Gv~-r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~ 128 (182)
-|.++|++.+-. .+|.++...|.-|+......|+.+|..++.|++|+||+..||+.|+.-.+
T Consensus 41 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlL 103 (126)
T 1tzy_B 41 YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLL 103 (126)
T ss_dssp HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 599999998876 79999999999999999999999999999999999999999999997554
No 45
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=97.33 E-value=0.00053 Score=53.93 Aligned_cols=72 Identities=11% Similarity=0.314 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCCccChHHHHHHHHHHHhhhcccccccHhhhhhhh----hHHHHHHHHHhcCCcccChHHHHHHHHHHH
Q psy8542 18 QVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAR----DAQVIVNMFQEAGIKNYDPRCVQQMLEFVN 93 (182)
Q Consensus 18 ~~i~~il~~~gi~~yep~v~~qll~f~yryt~~vL~DA~vys~har----daqlI~rIlk~~Gv~r~sp~v~~qLle~~~ 93 (182)
+++.....+.|++ +.|.++.+|.|+.|+|..++..|+..|+.||+ ++.-|...+++. ..|++++.
T Consensus 27 kIvee~~~~~~~~-vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn----------~~L~~~L~ 95 (140)
T 3vh5_A 27 ALAQDVAEDKGVL-FSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRS----------NSLLKYIT 95 (140)
T ss_dssp HHHHHHHHHHTCE-ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTS----------HHHHHHHH
T ss_pred HHHHHHHHhcCCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC----------HHHHHHHH
Confidence 4555556666755 99999999999999999999999999999998 334555555553 35667777
Q ss_pred HHHHHHH
Q psy8542 94 NYTTTIL 100 (182)
Q Consensus 94 ry~~~Vl 100 (182)
.|..++.
T Consensus 96 ~~~~el~ 102 (140)
T 3vh5_A 96 QKSDELA 102 (140)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777765
No 46
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=97.16 E-value=0.00079 Score=50.69 Aligned_cols=80 Identities=13% Similarity=0.164 Sum_probs=63.0
Q ss_pred CCCCchHHHHHHHHHHcCCCccChHHHHHHHHHHHhhhcccccccHhhhhhhh----hHHHHHHHHHhcCCcccChHHHH
Q psy8542 11 SKLPRDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAR----DAQVIVNMFQEAGIKNYDPRCVQ 86 (182)
Q Consensus 11 ~~~prda~~i~~il~~~gi~~yep~v~~qll~f~yryt~~vL~DA~vys~har----daqlI~rIlk~~Gv~r~sp~v~~ 86 (182)
..+|+- .|.-|++..|+....+.+...|.|+.++|...|..|+..|++|++ ++.-|...+++.|...+.....
T Consensus 6 ~~lP~a--~I~Ri~r~~g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~l~- 82 (111)
T 3b0c_T 6 PEIASS--LIKQIFSHYVKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMPLH- 82 (111)
T ss_dssp ----CH--HHHHHHHHHHCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBCHH-
T ss_pred CCCCHH--HHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCccccccHH-
Confidence 456664 678899999999999999999999999999999999999999998 4567888888888776544443
Q ss_pred HHHHHHHHHH
Q psy8542 87 QMLEFVNNYT 96 (182)
Q Consensus 87 qLle~~~ry~ 96 (182)
.++++|.
T Consensus 83 ---~l~~~~l 89 (111)
T 3b0c_T 83 ---VLVERHL 89 (111)
T ss_dssp ---HHHHHHS
T ss_pred ---HHHHHhC
Confidence 4555553
No 47
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.13 E-value=0.0028 Score=45.00 Aligned_cols=54 Identities=19% Similarity=0.386 Sum_probs=49.8
Q ss_pred cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhc
Q psy8542 75 AGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQL 128 (182)
Q Consensus 75 ~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~ 128 (182)
-|-...+|+|-+.|++++..|+.+|+..|..+|.|.|.+|+++-||++.++..-
T Consensus 19 dp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~w 72 (76)
T 1h3o_B 19 DPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQW 72 (76)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhhc
Confidence 355779999999999999999999999999999999999999999999997643
No 48
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.01 E-value=0.0028 Score=51.66 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=56.7
Q ss_pred HHHHHHHhcCC-cccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhc
Q psy8542 67 VIVNMFQEAGI-KNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQL 128 (182)
Q Consensus 67 lI~rIlk~~Gv-~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~ 128 (182)
-|.++|++.+- ..+|.++...|-.|+.+....|..+|..++.|.+|+|++..||+.|++.-.
T Consensus 8 yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~l 70 (192)
T 2jss_A 8 YIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLIL 70 (192)
T ss_dssp HHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhc
Confidence 48889998765 679999999999999999999999999999999999999999999997544
No 49
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=97.00 E-value=0.00089 Score=52.41 Aligned_cols=68 Identities=4% Similarity=0.054 Sum_probs=56.5
Q ss_pred HHHHHHHh-cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCCCCHHHHHHHHHHhcCCCCCC
Q psy8542 67 VIVNMFQE-AGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYA-NHAKKKTVDVEDIKLAITNQLSGSFAK 134 (182)
Q Consensus 67 lI~rIlk~-~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA-~HAgRktI~~eDVrLAI~~r~~~~F~~ 134 (182)
-|++|++. ..+..++..++..+-..++-|+..++..|...| ...+|+||+..||..||+..-.+.|-.
T Consensus 24 RIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~ 93 (140)
T 2byk_A 24 RVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 93 (140)
T ss_dssp -----CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGT
T ss_pred HHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHh
Confidence 47888874 566789999999999999999999999999999 989999999999999999876677743
No 50
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.0027 Score=53.73 Aligned_cols=65 Identities=22% Similarity=0.266 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcC----CcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q psy8542 65 AQVIVNMFQEAG----IKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQLS 129 (182)
Q Consensus 65 aqlI~rIlk~~G----v~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~~ 129 (182)
+++++.|..+.. --+++..++..|-|.++.|...+.+|+...|-||+|-||..-|++||-.-|+.
T Consensus 18 qRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~ 86 (235)
T 2l5a_A 18 ARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQ 86 (235)
T ss_dssp HHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCS
T ss_pred HHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhc
Confidence 478899988753 35899999999999999999999999999999999999999999999876665
No 51
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=96.15 E-value=0.0038 Score=44.49 Aligned_cols=66 Identities=17% Similarity=0.311 Sum_probs=56.8
Q ss_pred CCCchHHHHHHHHHHcCCCccChHHHHHHHHHHHhhhcccccccHhhhhhhh----hHHHHHHHHHhcCCcc
Q psy8542 12 KLPRDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAR----DAQVIVNMFQEAGIKN 79 (182)
Q Consensus 12 ~~prda~~i~~il~~~gi~~yep~v~~qll~f~yryt~~vL~DA~vys~har----daqlI~rIlk~~Gv~r 79 (182)
.+|+++ |.-|+++.|+....+.+...|.+....|..+|++||..|++|++ ++.-|...|+..|..-
T Consensus 10 ~ip~~~--I~Riar~~Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~l 79 (84)
T 2hue_C 10 GITKPA--IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTL 79 (84)
T ss_dssp SSCHHH--HHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEE
T ss_pred CCCHHH--HHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCC
Confidence 377775 89999999999999999999999999999999999999999998 4456677777766543
No 52
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=95.85 E-value=0.01 Score=43.87 Aligned_cols=67 Identities=16% Similarity=0.365 Sum_probs=57.3
Q ss_pred CCCchHHHHHHHHHHcCCCccChHHHHHHHHHHHhhhcccccccHhhhhhhh----hHHHHHHHHHhcCCccc
Q psy8542 12 KLPRDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAR----DAQVIVNMFQEAGIKNY 80 (182)
Q Consensus 12 ~~prda~~i~~il~~~gi~~yep~v~~qll~f~yryt~~vL~DA~vys~har----daqlI~rIlk~~Gv~r~ 80 (182)
.+|++ .|.-|+++.|+....+.+...|.++...|..+|++||..|++|++ ++.-|...|+..|..-|
T Consensus 28 ~ip~~--~I~Rlar~~Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~lY 98 (102)
T 1id3_B 28 GITKP--AIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 98 (102)
T ss_dssp GSCHH--HHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCCEE
T ss_pred CCCHH--HHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 36766 489999999999999999999999999999999999999999998 45667777777775433
No 53
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=95.81 E-value=0.0099 Score=43.88 Aligned_cols=65 Identities=14% Similarity=0.347 Sum_probs=53.9
Q ss_pred CCCchHHHHHHHHHHcCCCccChHHHHHHHHHHHhhhcccccccHhhhhhhhh----HHHHHHHHHhcCCc
Q psy8542 12 KLPRDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHARD----AQVIVNMFQEAGIK 78 (182)
Q Consensus 12 ~~prda~~i~~il~~~gi~~yep~v~~qll~f~yryt~~vL~DA~vys~hard----aqlI~rIlk~~Gv~ 78 (182)
.+|+. .|+-|+++.|+....+.+...|-++.-.|..+|++||..|++|++. +.-|...++..|..
T Consensus 29 gip~~--~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~ 97 (103)
T 2yfw_B 29 GITKP--AIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRT 97 (103)
T ss_dssp -CCHH--HHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC--
T ss_pred cCCHH--HHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCC
Confidence 36766 4899999999999999999999999999999999999999999983 35566666666643
No 54
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=95.69 E-value=0.012 Score=43.45 Aligned_cols=67 Identities=16% Similarity=0.332 Sum_probs=56.4
Q ss_pred CCCchHHHHHHHHHHcCCCccChHHHHHHHHHHHhhhcccccccHhhhhhhhh----HHHHHHHHHhcCCccc
Q psy8542 12 KLPRDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHARD----AQVIVNMFQEAGIKNY 80 (182)
Q Consensus 12 ~~prda~~i~~il~~~gi~~yep~v~~qll~f~yryt~~vL~DA~vys~hard----aqlI~rIlk~~Gv~r~ 80 (182)
.+|+. .|+-|+++.|+....+.+...|-+..-.|..+|++||..|++|++. +.-|...++..|..-|
T Consensus 29 gip~~--~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~lY 99 (103)
T 1tzy_D 29 GITKP--AIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99 (103)
T ss_dssp GSCHH--HHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEEE
T ss_pred cCCHH--HHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCCc
Confidence 36666 5899999999999999999999999999999999999999999983 4566667777775433
No 55
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.20 E-value=0.79 Score=38.18 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=50.1
Q ss_pred HHHHHHHhcCCcccChHHHHHHHHHHH----HHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh
Q psy8542 67 VIVNMFQEAGIKNYDPRCVQQMLEFVN----NYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127 (182)
Q Consensus 67 lI~rIlk~~Gv~r~sp~v~~qLle~~~----ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r 127 (182)
++...++..|+ .+++++...+.+.+. |++..+++.|..+|...|+..|+.+||+.|++..
T Consensus 267 il~~~~~~~~~-~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 267 ILRIRCEEEDV-EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp HHHHHHHHTTC-CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 44445555665 489999999999885 7899999999999999999999999999999853
No 56
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=90.08 E-value=2.2 Score=32.39 Aligned_cols=61 Identities=15% Similarity=0.284 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcC----CcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC---CCC---HHHHHHHHH
Q psy8542 65 AQVIVNMFQEAG----IKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKK---TVD---VEDIKLAIT 125 (182)
Q Consensus 65 aqlI~rIlk~~G----v~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRk---tI~---~eDVrLAI~ 125 (182)
+++++.|..+.. --|+++.++..|-|.+|.|..++.+|+...|-||-|. .|+ .+.++-+++
T Consensus 8 ~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~ 78 (121)
T 2ly8_A 8 ARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLK 78 (121)
T ss_dssp HHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHH
Confidence 478888887642 3589999999999999999999999999999999664 454 445555554
No 57
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=89.02 E-value=2.1 Score=30.61 Aligned_cols=60 Identities=12% Similarity=0.218 Sum_probs=52.1
Q ss_pred hHHHHHHHHHhcCC----cccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q psy8542 64 DAQVIVNMFQEAGI----KNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAI 124 (182)
Q Consensus 64 daqlI~rIlk~~Gv----~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI 124 (182)
...+|.+|++ ..+ +++++++...+.+++.-|+.|...-|...|+--|...|+.+|++--+
T Consensus 14 ~~~li~ril~-~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~ 77 (84)
T 4dra_E 14 RKELVSRLLH-LHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVL 77 (84)
T ss_dssp CHHHHHHHHH-TTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred CHHHHHHHHH-HHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 4578999998 555 47999999999999999999999999999887788899999997643
No 58
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.68 E-value=1.5 Score=33.37 Aligned_cols=59 Identities=7% Similarity=0.044 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCcccChHHHHHHHHHHH---HHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHH
Q psy8542 65 AQVIVNMFQEAGIKNYDPRCVQQMLEFVN---NYTTTILEDSRVYANHAKKKTVDVEDIKLAIT 125 (182)
Q Consensus 65 aqlI~rIlk~~Gv~r~sp~v~~qLle~~~---ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~ 125 (182)
.+++..+++..|+ .+++++...+.+.+. |.+..+++.+..+|...+ ++|+.+||+.+++
T Consensus 180 ~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 180 LAALQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 3466666677776 589999998888776 566778888888886655 5699999998874
No 59
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=88.04 E-value=2.7 Score=34.45 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=46.0
Q ss_pred ccChHHHHHHHHHHH-------HHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCC
Q psy8542 79 NYDPRCVQQMLEFVN-------NYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQLSGSF 132 (182)
Q Consensus 79 r~sp~v~~qLle~~~-------ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~~~~F 132 (182)
.+++++...+.+++. |....+++-|..+|.-.|+.+|+.+||+.|+.....+.+
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~ 327 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRL 327 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhcc
Confidence 799999999998876 677889999999999899999999999999986544444
No 60
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=86.67 E-value=0.61 Score=32.27 Aligned_cols=53 Identities=17% Similarity=0.302 Sum_probs=44.6
Q ss_pred CCCCchHHHHHHHHHHcCCCccChHHHHHHHHHHHhhhcccccccHhhhhhhhhH
Q psy8542 11 SKLPRDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHARDA 65 (182)
Q Consensus 11 ~~~prda~~i~~il~~~gi~~yep~v~~qll~f~yryt~~vL~DA~vys~harda 65 (182)
..+|.+ .|..|.+|.||+.-.+.+...|-+-.=-+-.+|.++|..|+.|+++.
T Consensus 5 s~lp~~--~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk 57 (70)
T 1taf_B 5 SSISAE--SMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQ 57 (70)
T ss_dssp CCCCHH--HHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHH--HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 346654 68999999999999999999998766666699999999999999743
No 61
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=85.84 E-value=3 Score=36.68 Aligned_cols=65 Identities=15% Similarity=0.258 Sum_probs=50.4
Q ss_pred hHHHHHHHH----HhcCCcccChHHHHHHHHHH-H---HHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q psy8542 64 DAQVIVNMF----QEAGIKNYDPRCVQQMLEFV-N---NYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQLS 129 (182)
Q Consensus 64 daqlI~rIl----k~~Gv~r~sp~v~~qLle~~-~---ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~~ 129 (182)
+..-+..++ +..|+. +++++...+..++ . |++..+++.|..+|.-.|+..|+.+||+.|+..-.+
T Consensus 367 ~~~e~~~iL~~~~~~~~~~-~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d 439 (456)
T 2c9o_A 367 TPQEMKQIIKIRAQTEGIN-ISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYD 439 (456)
T ss_dssp CHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcC
Confidence 444444444 344653 8999999888887 3 789999999999999999999999999999875443
No 62
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=85.21 E-value=2.8 Score=29.66 Aligned_cols=60 Identities=12% Similarity=0.202 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q psy8542 64 DAQVIVNMFQEA---GIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123 (182)
Q Consensus 64 daqlI~rIlk~~---Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLA 123 (182)
+..+|.+|++.. --+++++++...+.+++.-|+.|...-|..-|+--|...|+.+|++--
T Consensus 10 ~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki 72 (81)
T 3b0b_C 10 RKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKV 72 (81)
T ss_dssp CHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHH
Confidence 445677777751 245799999999999999999999999999888778889999999763
No 63
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=84.13 E-value=4.2 Score=37.20 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=45.2
Q ss_pred CCcccChHHHHHHHHHHH-------------HHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q psy8542 76 GIKNYDPRCVQQMLEFVN-------------NYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126 (182)
Q Consensus 76 Gv~r~sp~v~~qLle~~~-------------ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~ 126 (182)
....+++++...|++... |....+++.|..+|...++..|+.+||+.|++.
T Consensus 311 ~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 311 KIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp SSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 456899999999999874 667789999999999999999999999999964
No 64
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=83.19 E-value=9.1 Score=27.33 Aligned_cols=62 Identities=10% Similarity=0.104 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCCHHHHHHHHHHh
Q psy8542 66 QVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAK-KKTVDVEDIKLAITNQ 127 (182)
Q Consensus 66 qlI~rIlk~~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAg-RktI~~eDVrLAI~~r 127 (182)
..|++++....-..++++++.-+--+++-|+.++.+.|....+.-| ...|.-.-|+.|....
T Consensus 20 ~~vKrl~~~~~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl 82 (89)
T 1bh9_B 20 AAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRL 82 (89)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH
Confidence 3566666655556799999999999999999999999999998765 4589999999998754
No 65
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=82.08 E-value=6.5 Score=32.19 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=44.4
Q ss_pred cccChHHHHHHHHHHH------HHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh
Q psy8542 78 KNYDPRCVQQMLEFVN------NYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127 (182)
Q Consensus 78 ~r~sp~v~~qLle~~~------ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r 127 (182)
..+++++...+.+.+. |++..+++.|..+|...|+.+|+.+||+.|++..
T Consensus 221 ~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 221 GVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp TTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 4688999999999988 7888999999999988899999999999998754
No 66
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=81.27 E-value=2 Score=30.21 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy8542 67 VIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAK 111 (182)
Q Consensus 67 lI~rIlk~~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAg 111 (182)
=|..|.++.|++.++++|+..+-=.++.....+++.-...|.|.-
T Consensus 11 ri~~I~~k~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~R~ 55 (75)
T 1h3o_A 11 RILEIGKKHGITELHPDVVSYVSHATQQRLQNLVEKISETAQQKN 55 (75)
T ss_dssp HHHHHHHTTTCCEECTTHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHhcCCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 366788999999999999999999999999999999999999853
No 67
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=80.67 E-value=4.3 Score=40.08 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=54.6
Q ss_pred HHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q psy8542 67 VIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126 (182)
Q Consensus 67 lI~rIlk~~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~ 126 (182)
-|+++|+..-+.|++..+..-|..+++--+.+||+=|..+|...+++.|+-.+|.+|+..
T Consensus 109 ~~~~~l~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 109 KIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred HHHHHhhcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 477878655567999999999999999999999999999999999999999999999964
No 68
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=79.56 E-value=5.5 Score=29.40 Aligned_cols=56 Identities=11% Similarity=0.168 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHH
Q psy8542 67 VIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAIT 125 (182)
Q Consensus 67 lI~rIlk~~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~ 125 (182)
.+..+++..|.. +++++...+.+.+......+.......+..+ ++|+.+||+.++.
T Consensus 169 ~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 169 RLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 455555666765 8888888888776544443333333333333 6899999999885
No 69
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=78.41 E-value=5.8 Score=33.19 Aligned_cols=60 Identities=5% Similarity=0.056 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCcccChHHHHHHHHHHH---HHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh
Q psy8542 67 VIVNMFQEAGIKNYDPRCVQQMLEFVN---NYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127 (182)
Q Consensus 67 lI~rIlk~~Gv~r~sp~v~~qLle~~~---ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r 127 (182)
++.++.+..|++ +++++...+.+.+. |.+..+++.+..+|.-.|+..|+.++|+.|++..
T Consensus 188 iL~~~~~~~~~~-~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 188 IIKRAASLMDVE-IEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHHHHTTCC-BCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-cCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 444444556764 88888888777643 5677888888889988888899999999999864
No 70
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=77.28 E-value=15 Score=29.87 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=42.1
Q ss_pred cccChHHHHHHHHHHH------HHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh
Q psy8542 78 KNYDPRCVQQMLEFVN------NYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127 (182)
Q Consensus 78 ~r~sp~v~~qLle~~~------ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r 127 (182)
..+++++...+.++.. +++.+++..|...+...|+..|+.+||+.|++..
T Consensus 217 ~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 217 GVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp SCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 4688999998888887 5677888899888888888999999999988753
No 71
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=76.79 E-value=12 Score=30.88 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=39.7
Q ss_pred cccChHHHHHHHHHHH------HHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh
Q psy8542 78 KNYDPRCVQQMLEFVN------NYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127 (182)
Q Consensus 78 ~r~sp~v~~qLle~~~------ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r 127 (182)
..+++++...+.+.+. |++.++++.|..+|. +..+|+.+||+.|++..
T Consensus 217 ~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 217 GTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp TSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 4688899888888876 467788899988887 77899999999998764
No 72
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=74.20 E-value=24 Score=28.90 Aligned_cols=68 Identities=16% Similarity=0.113 Sum_probs=51.4
Q ss_pred cccChHHHHHHHHHH------------HHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCC------CCCChh
Q psy8542 78 KNYDPRCVQQMLEFV------------NNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQLSGSFA------KPPPRE 139 (182)
Q Consensus 78 ~r~sp~v~~qLle~~------------~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~~~~F~------~pppke 139 (182)
..++++++..+.+.+ -|++.++++.|...|...|+.+|+.+||..|+.......+. ++..+.
T Consensus 213 ~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~ 292 (389)
T 1fnn_A 213 GSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKL 292 (389)
T ss_dssp TSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHH
T ss_pred CCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHH
Confidence 368999999999888 47788999999999988899999999999998865433221 123455
Q ss_pred hhhccc
Q psy8542 140 SKGSGQ 145 (182)
Q Consensus 140 ~Ll~lA 145 (182)
+|..++
T Consensus 293 ~L~~l~ 298 (389)
T 1fnn_A 293 FLLAIV 298 (389)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 73
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=71.60 E-value=19 Score=29.37 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=41.6
Q ss_pred ccChHHHHHHHHHH-----------------------HHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCC
Q psy8542 79 NYDPRCVQQMLEFV-----------------------NNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQLSGSF 132 (182)
Q Consensus 79 r~sp~v~~qLle~~-----------------------~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~~~~F 132 (182)
.+++++...+.+++ -|-...+++-|..+|...|+..|+.+||+.|+.....+..
T Consensus 226 ~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r~ 302 (331)
T 2r44_A 226 TISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHRI 302 (331)
T ss_dssp BCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhhc
Confidence 36777777777765 3556677888889999999999999999999986554433
No 74
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=67.66 E-value=10 Score=28.00 Aligned_cols=32 Identities=38% Similarity=0.446 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q psy8542 95 YTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126 (182)
Q Consensus 95 y~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~ 126 (182)
-+..+++.|...|...|...|+.+.+-+|+-.
T Consensus 85 ~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~ 116 (145)
T 3fes_A 85 RSKQILELSGMFANKLKTNYIGTEHILLAIIQ 116 (145)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcccHHHHHHHHHh
Confidence 35779999999999999999999999999954
No 75
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=66.30 E-value=8 Score=32.05 Aligned_cols=61 Identities=5% Similarity=0.035 Sum_probs=43.6
Q ss_pred HHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh
Q psy8542 66 QVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127 (182)
Q Consensus 66 qlI~rIlk~~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r 127 (182)
+.+.+++++.|++ +++++...|.+.+.--...+..+-..++-+++.++|+.+||+..+...
T Consensus 149 ~~l~~~~~~~g~~-i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 149 RWVAARAKQLNLE-LDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHHHHTTCE-ECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhh
Confidence 4677888888885 899999999988765555555544444444456689999998776543
No 76
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=65.17 E-value=13 Score=27.43 Aligned_cols=54 Identities=11% Similarity=0.236 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCcccChHHHHHHHHHHHH---HHHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q psy8542 66 QVIVNMFQEAGIKNYDPRCVQQMLEFVNN---YTTTILEDSRVYANHAKKKTVDVEDIKLAI 124 (182)
Q Consensus 66 qlI~rIlk~~Gv~r~sp~v~~qLle~~~r---y~~~Vl~dA~~yA~HAgRktI~~eDVrLAI 124 (182)
+++...++..|+ .+++++...+.+.+.- ++..+++.|..+ ++++|+.+||+.++
T Consensus 192 ~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 192 HQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHHTTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 355555566665 5788888888777653 444455555433 23589999999876
No 77
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=65.01 E-value=20 Score=24.48 Aligned_cols=48 Identities=8% Similarity=0.250 Sum_probs=38.4
Q ss_pred HHHHHHhcCCcccChHHHHHHHHHHHHH---------HHHHHHHHHHHhhhcCCCCC
Q psy8542 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNY---------TTTILEDSRVYANHAKKKTV 115 (182)
Q Consensus 68 I~rIlk~~Gv~r~sp~v~~qLle~~~ry---------~~~Vl~dA~~yA~HAgRktI 115 (182)
+..+....|+...+|-....|.+.+..| ..+++..|+.+|-..|+...
T Consensus 4 ~~~~~e~~g~g~ls~~e~e~i~~w~~~~~~~~~~~~~~~elI~~A~~~av~~~~~~~ 60 (83)
T 2i5u_A 4 IRSIWENNGFGLMSSKTMTDFDYWISDFEKIGASQKEAEQLIVKAIEIAIDANARNY 60 (83)
T ss_dssp HHHHHHTTTSCSCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTCCSH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHcCCCCH
Confidence 3455666677688999999999999888 88999999999987776543
No 78
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=62.90 E-value=44 Score=27.58 Aligned_cols=49 Identities=10% Similarity=0.230 Sum_probs=41.6
Q ss_pred ccChHHHHHHHHHHH---------HHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh
Q psy8542 79 NYDPRCVQQMLEFVN---------NYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127 (182)
Q Consensus 79 r~sp~v~~qLle~~~---------ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r 127 (182)
.+++++...+.+.+. +++.+++..|...+...++..|+.++|+.++...
T Consensus 236 ~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 236 VWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp SCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 478888888888887 5888889888888888888999999999888653
No 79
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=62.25 E-value=11 Score=27.93 Aligned_cols=39 Identities=15% Similarity=0.347 Sum_probs=31.8
Q ss_pred CCCCCCchHHHHHHHHHHcCCCccChHHHHHHHHHHHhhh
Q psy8542 9 STSKLPRDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYT 48 (182)
Q Consensus 9 ~~~~~prda~~i~~il~~~gi~~yep~v~~qll~f~yryt 48 (182)
+++.++=.++-|..-|.++||+ +++.|+.+++|..-+|.
T Consensus 20 ~~~~~~Vsae~L~eEfdefGi~-~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 20 GPGSMSASAQQLAEELQIFGLD-CEEALIEKLVELCVQYG 58 (101)
T ss_dssp ----CCCCHHHHHHHHHHHTCB-CCHHHHHHHHHHHHHHT
T ss_pred CCchhhccHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcC
Confidence 4556777899999999999996 67799999999999995
No 80
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=61.80 E-value=18 Score=25.22 Aligned_cols=45 Identities=11% Similarity=0.318 Sum_probs=39.1
Q ss_pred HHHHHHHHc-CCCccChHHHHHHHHHHHhhhcccccccHhhhhhhh
Q psy8542 19 VIVNMFQEA-GIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAR 63 (182)
Q Consensus 19 ~i~~il~~~-gi~~yep~v~~qll~f~yryt~~vL~DA~vys~har 63 (182)
-|..++++. |=...+|.|-..|+++|--|..+|+..|-.++.|-+
T Consensus 10 ~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~ 55 (76)
T 1h3o_B 10 KLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRK 55 (76)
T ss_dssp HHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455667765 667899999999999999999999999999999865
No 81
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=58.22 E-value=33 Score=28.44 Aligned_cols=82 Identities=13% Similarity=0.240 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhcccccccHhhhhhhhhHHHHHHHHHhcCCcccC-----hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy8542 38 QQMLEFVNNYTTTILEDSRVYANHARDAQVIVNMFQEAGIKNYD-----PRCVQQMLEFVNNYTTTILEDSRVYANHAKK 112 (182)
Q Consensus 38 ~qll~f~yryt~~vL~DA~vys~hardaqlI~rIlk~~Gv~r~s-----p~v~~qLle~~~ry~~~Vl~dA~~yA~HAgR 112 (182)
..|-+||-.|-.+|=+|...= .-..++..+.||.... .+... +-||=|.-+..|++-....-++.|.
T Consensus 41 ~~L~~FA~kHk~eI~~dp~fR-------~~F~~mc~siGVDPLa~s~kg~~~lg-~gdfy~eLavqIvEvC~~tr~~nGG 112 (233)
T 1u5t_A 41 ERLVEFAKKHNSELQASPEFR-------SKFMHMCSSIGIDPLSLFDRDKHLFT-VNDFYYEVCLKVIEICRQTKDMNGG 112 (233)
T ss_dssp HHHHHHHHHCTTTTTTCHHHH-------HHHHHHHHHHTCCHHHHTTSSGGGTT-HHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred HHHHHHHHHhHhhcccCHHHH-------HHHHHHHHHcCCCCCccCCccccccC-cchHHHHHHHHHHHHHHHHHHhcCC
Confidence 457788988888887776421 1246678888988433 11222 4688888888888877777766662
Q ss_pred --------------CCCCHHHHHHHHHHh
Q psy8542 113 --------------KTVDVEDIKLAITNQ 127 (182)
Q Consensus 113 --------------ktI~~eDVrLAI~~r 127 (182)
..|+.|||..||++.
T Consensus 113 li~l~el~~~~~r~~~IS~dDi~rAik~L 141 (233)
T 1u5t_A 113 VISFQELEKVHFRKLNVGLDDLEKSIDML 141 (233)
T ss_dssp CEEHHHHHHTTTTTTTCCHHHHHHHHHHH
T ss_pred eeEHHHHHHHHHhhcCCCHHHHHHHHHHh
Confidence 389999999999975
No 82
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=57.54 E-value=2.4 Score=26.79 Aligned_cols=32 Identities=31% Similarity=0.346 Sum_probs=14.3
Q ss_pred ccCCcccccCCCCCCCCCccC-Ccccccccccc
Q psy8542 147 GAMGSNAHNKAPLTKGAMKTV-PQARNQNAQSN 178 (182)
Q Consensus 147 ~~~~~~~~N~~pLP~~~girl-P~e~~~~~~~n 178 (182)
++|+..+.+..|||+.|..+. +.-+.++.+.|
T Consensus 1 ~~m~~~~~~~~~LP~gWe~~~~~~G~~Yy~nh~ 33 (49)
T 2kpz_A 1 GAMGPSEIEQGFLPKGWEVRHAPNGRPFFIDHN 33 (49)
T ss_dssp -----------CCCTTEEEEECTTSCEEEEETT
T ss_pred CCCccccccCCCCCCCcEEEECCCCCEEEEECC
Confidence 367778889999999998776 44455555443
No 83
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=57.31 E-value=12 Score=24.72 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhc
Q psy8542 95 YTTTILEDSRVYANHAKKKTVDVEDIKLAITNQL 128 (182)
Q Consensus 95 y~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~ 128 (182)
-...+..+|...|-..++..|+.+|+..|++...
T Consensus 41 Di~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 41 EVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 3567788888888888999999999999998643
No 84
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=56.02 E-value=8.3 Score=30.05 Aligned_cols=63 Identities=10% Similarity=0.163 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCcccChHHHHHHHHHH----HHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh
Q psy8542 65 AQVIVNMFQEAGIKNYDPRCVQQMLEFV----NNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127 (182)
Q Consensus 65 aqlI~rIlk~~Gv~r~sp~v~~qLle~~----~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r 127 (182)
.+++...++..|...-.+.....+.+.. -+....++..|...|...++..|+.+|++.|++..
T Consensus 183 ~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 183 REIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 3466777777777543332334444433 34566778888888888888999999999999754
No 85
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=55.79 E-value=54 Score=27.20 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=53.3
Q ss_pred HHHHHHHHhhhcccccccHhhhhhhhhHHHHHHHHHhcCCcccChH--HHHH---HHHHHHHHHHHHHHHHHHHhhhcC-
Q psy8542 38 QQMLEFVNNYTTTILEDSRVYANHARDAQVIVNMFQEAGIKNYDPR--CVQQ---MLEFVNNYTTTILEDSRVYANHAK- 111 (182)
Q Consensus 38 ~qll~f~yryt~~vL~DA~vys~hardaqlI~rIlk~~Gv~r~sp~--v~~q---Lle~~~ry~~~Vl~dA~~yA~HAg- 111 (182)
.+|-+||-+|-.+|=+|...= .-..++..+.||...... .-.+ +-||=|.-+.+|++-...--.+.|
T Consensus 21 ~~L~~FA~kH~~eI~~dp~fR-------~~F~~mc~siGVDPlas~kg~ws~~lG~gdfy~eLavqIvEvC~~tr~~nGG 93 (234)
T 3cuq_A 21 TNLEEFASKHKQEIRKNPEFR-------VQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGG 93 (234)
T ss_dssp HHHHHHHHHHHHHHHHCHHHH-------HHHHHHHHHHTCCTTSCTTSHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHcccccccCHHHH-------HHHHHHHHHcCCCcccCCcchhhhhcCcchHHHHHHHHHHHHHHHHHHhcCC
Confidence 467788888877776665321 135677889999865533 1111 346666666666665555444333
Q ss_pred --------------C----CCCCHHHHHHHHHHh
Q psy8542 112 --------------K----KTVDVEDIKLAITNQ 127 (182)
Q Consensus 112 --------------R----ktI~~eDVrLAI~~r 127 (182)
| ..|+.+||..||++.
T Consensus 94 li~L~el~~~~~r~Rg~~~~~IS~dDi~rAik~L 127 (234)
T 3cuq_A 94 LITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKL 127 (234)
T ss_dssp EEEHHHHHHHHHHTTTTCCSSCCHHHHHHHHHHH
T ss_pred eeEHHHHHHHHHHhcCCccCccCHHHHHHHHHHH
Confidence 1 579999999999964
No 86
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=55.52 E-value=9.4 Score=31.07 Aligned_cols=58 Identities=9% Similarity=0.128 Sum_probs=37.9
Q ss_pred HHHHHHHhcCCcccChHHHHHHHHHHHHH---HHHHHHHHHHHhhhcCCC-CCCHHHHHHHHH
Q psy8542 67 VIVNMFQEAGIKNYDPRCVQQMLEFVNNY---TTTILEDSRVYANHAKKK-TVDVEDIKLAIT 125 (182)
Q Consensus 67 lI~rIlk~~Gv~r~sp~v~~qLle~~~ry---~~~Vl~dA~~yA~HAgRk-tI~~eDVrLAI~ 125 (182)
.+..+++..|+ .+++++...+.+.+... +..+++.+..++...++. .|+.+||+.++.
T Consensus 200 ~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 200 RLRFISEQENV-KCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHTTTC-CCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 34444455666 48899999888886543 444555555555443333 899999998764
No 87
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=54.85 E-value=30 Score=27.79 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCcccChHHHHHHHHHH---HHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh
Q psy8542 66 QVIVNMFQEAGIKNYDPRCVQQMLEFV---NNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127 (182)
Q Consensus 66 qlI~rIlk~~Gv~r~sp~v~~qLle~~---~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r 127 (182)
.++...++..|+ .+++++...|.+.+ -|.+..+++.+..++...+...|+.+|+..++...
T Consensus 175 ~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 175 QGVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp HHHHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 345555555665 48899988888874 35566777777777777778899999999988753
No 88
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=53.77 E-value=13 Score=29.18 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=43.2
Q ss_pred HHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHH
Q psy8542 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVED 119 (182)
Q Consensus 68 I~rIlk~~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eD 119 (182)
..++++.++-=++...-...+.||.++-..+++.-|..-|...||..|..-|
T Consensus 8 ~e~lFR~aa~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~D 59 (148)
T 1wwi_A 8 FERLFRQAAGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPD 59 (148)
T ss_dssp HHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGG
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecccc
Confidence 5677876655567788889999999999999999999999999997665443
No 89
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=52.02 E-value=19 Score=28.32 Aligned_cols=35 Identities=11% Similarity=0.270 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh
Q psy8542 93 NNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127 (182)
Q Consensus 93 ~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r 127 (182)
-+-...++..|..+|...++..|+.+|++.|++..
T Consensus 218 ~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 218 GADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 34566788899999999999999999999999864
No 90
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=51.55 E-value=69 Score=23.52 Aligned_cols=56 Identities=14% Similarity=0.295 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhcCCcccChHHHHHHHHHHHHH---HHHHHHHHHHHhhhcCCCCCCHHHH
Q psy8542 64 DAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNY---TTTILEDSRVYANHAKKKTVDVEDI 120 (182)
Q Consensus 64 daqlI~rIlk~~Gv~r~sp~v~~qLle~~~ry---~~~Vl~dA~~yA~HAgRktI~~eDV 120 (182)
.++-+++-+...|++ +++.++..++|.+.+| ..++...=++|+.+.+...+|.+-+
T Consensus 27 sae~L~eEfdefGi~-~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL 85 (101)
T 2keb_A 27 SAQQLAEELQIFGLD-CEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEIL 85 (101)
T ss_dssp CHHHHHHHHHHHTCB-CCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHH
T ss_pred cHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHH
Confidence 566788888899997 6779999999999999 5677778888888877767776643
No 91
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=51.45 E-value=65 Score=23.19 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh
Q psy8542 95 YTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127 (182)
Q Consensus 95 y~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r 127 (182)
-+..+++.|...|...|...|+.+.+-+|+-..
T Consensus 83 ~~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~ 115 (150)
T 2y1q_A 83 RAKKVIELSMDEARKLGHSYVGTEHILLGLIRE 115 (150)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhC
Confidence 356788999999999999999999999999643
No 92
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=48.08 E-value=23 Score=24.96 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=47.4
Q ss_pred HHHHHHHHHHcC---CCccChHHHHHHHHHHHhhhcccccccHhhhhhhh-------hHHHHHHHHH
Q psy8542 17 AQVIVNMFQEAG---IKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAR-------DAQVIVNMFQ 73 (182)
Q Consensus 17 a~~i~~il~~~g---i~~yep~v~~qll~f~yryt~~vL~DA~vys~har-------daqlI~rIlk 73 (182)
.|++..|-.+.. -.-|++..+.-|=|-+=-|-.++++|+...+.|++ |.+++++|-.
T Consensus 10 ~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg 76 (82)
T 3nqj_A 10 SRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 76 (82)
T ss_dssp HHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcc
Confidence 477777776653 34699999999999999999999999999999974 8888888853
No 93
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=46.41 E-value=1.3e+02 Score=25.24 Aligned_cols=116 Identities=10% Similarity=0.205 Sum_probs=83.2
Q ss_pred HHHHHHHHHHcCCCccC----hHHHHHHHHHHHhh------------hcccccccHhhhhhhh----hHHHHHHHHHhcC
Q psy8542 17 AQVIVNMFQEAGIKNYD----PRCVQQMLEFVNNY------------TTTILEDSRVYANHAR----DAQVIVNMFQEAG 76 (182)
Q Consensus 17 a~~i~~il~~~gi~~ye----p~v~~qll~f~yry------------t~~vL~DA~vys~har----daqlI~rIlk~~G 76 (182)
|+.+..-++++|+..+. ..--..+.+|-... +.+|+.-+..|.+++. ....+..|.+-+|
T Consensus 32 a~FLq~tl~e~~~~~~~~~~~~~~~~~f~~f~~Kvr~~~e~~~~~ps~eeIl~vaklF~de~tLdnLsr~qLvaLck~m~ 111 (249)
T 3skq_A 32 SEFLHETLEESNLITYNTIENAEKKQKFLNFFRKLYSAKEGKIMTFQHDEISAIAQMFKNDSVLDNLSRPQLAAMSKFMS 111 (249)
T ss_dssp HHHHHHHHTTCCCCCGGGCSSHHHHHHHHHHHHHHHTCBTTBCEEEEHHHHHHHHTTSCHHHHHHHSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccccccccccHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhcCCCcccccCCHHHHHHHHHHhC
Confidence 45666777788886542 22345688887753 2456777788887774 2235778889999
Q ss_pred CcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCC
Q psy8542 77 IKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQLSGSFAKP 135 (182)
Q Consensus 77 v~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~~~~F~~p 135 (182)
+..+.++... +-.+......|-.|=..++.. |=..++.++++.|+..|+...+.-+
T Consensus 112 L~p~gt~~~L--R~rLr~rl~~I~~DDr~I~~E-GV~sLs~~ELr~AC~~RGm~~~gls 167 (249)
T 3skq_A 112 LRPFGNDNML--RYQIRSKLKDIMNDDKTIDYE-GVESLSQEELYQACVSRGMKAYGVS 167 (249)
T ss_dssp CCCCSSHHHH--HHHHHHHHHHHHHHHHHHHHH-CGGGSCHHHHHHHHHHTTCCCTTCC
T ss_pred CCCCCChHHH--HHHHHHHHHHHHHhhHHHHHh-CcccCCHHHHHHHHHHcCCCCCCCC
Confidence 9998877654 345667777888887777766 6678999999999999998766543
No 94
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=46.30 E-value=10 Score=25.42 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=33.1
Q ss_pred CCCchHHHHHHHHHHcCCCccChHHHHHHHHHHHhhhcccccccHhhhhhhhhHHHHHHHHH---hcCCccc
Q psy8542 12 KLPRDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHARDAQVIVNMFQ---EAGIKNY 80 (182)
Q Consensus 12 ~~prda~~i~~il~~~gi~~yep~v~~qll~f~yryt~~vL~DA~vys~hardaqlI~rIlk---~~Gv~r~ 80 (182)
.-|-+.+.|...+...| |+|.||..+++.+-. +.-..-+-|.+||+ +.|++.+
T Consensus 18 ls~~e~~~i~~w~~~~~---~~~elI~~A~~~a~~-------------~~~~s~~Yi~~Il~~W~~~gi~T~ 73 (78)
T 2zc2_A 18 LSPFELEDLQKTVSDDK---TDPDLVRSALREAVF-------------NGKTNWNYIQAILRNWRHEGISTL 73 (78)
T ss_dssp CCHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHH-------------HTCCCHHHHHHHHHHHHHTTCCSH
T ss_pred CCHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHH-------------cCCCCHHHHHHHHHHHHHcCCCCH
Confidence 34667777777776654 778888888877731 11223344666775 5777764
No 95
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=45.52 E-value=25 Score=27.76 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcC---CCccChHHHHHHHHHHHhhhcccccccHhhhhhhh-------hHHHHHHHHH
Q psy8542 17 AQVIVNMFQEAG---IKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAR-------DAQVIVNMFQ 73 (182)
Q Consensus 17 a~~i~~il~~~g---i~~yep~v~~qll~f~yryt~~vL~DA~vys~har-------daqlI~rIlk 73 (182)
.|++..|-.+.. -.-|+...+.-|=|-+=-|-.++++|+...+-|++ |.+++.+|-.
T Consensus 84 ~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg 150 (156)
T 3r45_A 84 SRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 150 (156)
T ss_dssp HHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHcc
Confidence 577777777654 23589999999999999999999999999999974 8888888854
No 96
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=45.21 E-value=27 Score=27.59 Aligned_cols=60 Identities=10% Similarity=0.197 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCcccChHHHHHHHHH----HHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh
Q psy8542 66 QVIVNMFQEAGIKNYDPRCVQQMLEF----VNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127 (182)
Q Consensus 66 qlI~rIlk~~Gv~r~sp~v~~qLle~----~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r 127 (182)
+++...++..+.. ++.....+.+. .-+-+..++..|..+|-..++..|+.+|++.|++..
T Consensus 195 ~il~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 195 EILKIHTRKMNLA--EDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHTTSCBC--TTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCC--CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 3444444444443 12223444433 344677788999999988899999999999999854
No 97
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=43.94 E-value=30 Score=23.56 Aligned_cols=33 Identities=15% Similarity=0.312 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhc
Q psy8542 96 TTTILEDSRVYANHAKKKTVDVEDIKLAITNQL 128 (182)
Q Consensus 96 ~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~ 128 (182)
...+..+|...|-..++..|+.+|+..|++...
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~ 72 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVI 72 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHh
Confidence 556777888888888899999999999998643
No 98
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=43.91 E-value=58 Score=26.39 Aligned_cols=61 Identities=7% Similarity=0.120 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCcccChHHHHHHHHHH---HHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh
Q psy8542 66 QVIVNMFQEAGIKNYDPRCVQQMLEFV---NNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127 (182)
Q Consensus 66 qlI~rIlk~~Gv~r~sp~v~~qLle~~---~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r 127 (182)
.++.+.++..|+ .+++++...+.+.+ -|.+..+++.+..++...++..|+.+|++.++...
T Consensus 191 ~il~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 191 LILQKAALKLNK-TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHHHHTTC-EECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHh
Confidence 355555566664 47888888888754 35677788888888888888999999999999763
No 99
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=43.80 E-value=26 Score=27.18 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=46.9
Q ss_pred HHHHHHHHHHcC---CCccChHHHHHHHHHHHhhhcccccccHhhhhhhh-------hHHHHHHHH
Q psy8542 17 AQVIVNMFQEAG---IKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAR-------DAQVIVNMF 72 (182)
Q Consensus 17 a~~i~~il~~~g---i~~yep~v~~qll~f~yryt~~vL~DA~vys~har-------daqlI~rIl 72 (182)
.|++..|-.+.. -.-|+...+.-|=|-+=-|-.++++|+...+-|++ |.+++.+|-
T Consensus 68 ~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrir 133 (140)
T 3nqu_A 68 SRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 133 (140)
T ss_dssp HHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhc
Confidence 577777776653 24699999999999999999999999999999974 888888884
No 100
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=43.01 E-value=88 Score=22.26 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhhcCCCCCCHHHHHHHHH
Q psy8542 96 TTTILEDSRVYANHAKKKTVDVEDIKLAIT 125 (182)
Q Consensus 96 ~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~ 125 (182)
+..+++.|...|...|...|+.+.+-+|+-
T Consensus 84 ~~~~l~~A~~~A~~~~~~~i~~ehLLlall 113 (143)
T 1k6k_A 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIF 113 (143)
T ss_dssp HHHHHHHHHHHHHSSSCSCBCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 345888999999999999999999999994
No 101
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=42.78 E-value=17 Score=23.83 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=39.3
Q ss_pred HHHHHHHcCCCccChHHHHHHHHHHHhhhcccccccHhhhhhhh
Q psy8542 20 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAR 63 (182)
Q Consensus 20 i~~il~~~gi~~yep~v~~qll~f~yryt~~vL~DA~vys~har 63 (182)
|.-|+++.|..-+....+.-|-+.+=-|...+.+||..++.|++
T Consensus 8 v~Ri~k~~~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~k 51 (68)
T 1b67_A 8 IGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAG 51 (68)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45666666888999999999999999999999999999999976
No 102
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=42.51 E-value=19 Score=28.27 Aligned_cols=31 Identities=13% Similarity=0.316 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q psy8542 94 NYTTTILEDSRVYANHAKKKTVDVEDIKLAI 124 (182)
Q Consensus 94 ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI 124 (182)
+....++.+|..+|...++.+|+.+|++.|+
T Consensus 223 ~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 223 ADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 4566889999999988888999999999876
No 103
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=42.23 E-value=43 Score=23.21 Aligned_cols=55 Identities=20% Similarity=0.335 Sum_probs=45.5
Q ss_pred HHHHHHHHHHc-CCCccChHHHHHHHHHHHhhhcccccccHhhhhhhh-------hHHHHHHH
Q psy8542 17 AQVIVNMFQEA-GIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAR-------DAQVIVNM 71 (182)
Q Consensus 17 a~~i~~il~~~-gi~~yep~v~~qll~f~yryt~~vL~DA~vys~har-------daqlI~rI 71 (182)
.|++..|..+. |=.-|+...+.-|=|-+=-|-.++++|+...+.|++ |.+++++|
T Consensus 10 ~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 10 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI 72 (77)
T ss_dssp HHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence 36777777665 555689999999999999999999999999999975 77777766
No 104
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=40.27 E-value=39 Score=22.36 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh
Q psy8542 95 YTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127 (182)
Q Consensus 95 y~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r 127 (182)
-...+.++|...|-..++..|+.+|+..|++..
T Consensus 39 Di~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~ 71 (83)
T 3aji_B 39 DINSICQESGMLAVRENRYIVLAKDFEKAYKTV 71 (83)
T ss_dssp HHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 345677788888888788899999999999754
No 105
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=40.04 E-value=33 Score=30.28 Aligned_cols=49 Identities=16% Similarity=0.088 Sum_probs=38.6
Q ss_pred ccChHHHHHHHHHHH---HHHHHHHHHHHHHhhhc--CCCCCCHHHHHHHHHHh
Q psy8542 79 NYDPRCVQQMLEFVN---NYTTTILEDSRVYANHA--KKKTVDVEDIKLAITNQ 127 (182)
Q Consensus 79 r~sp~v~~qLle~~~---ry~~~Vl~dA~~yA~HA--gRktI~~eDVrLAI~~r 127 (182)
.+++++...|.+.+. |.+..+++.+..++... |+..|+.+||+.+++..
T Consensus 191 ~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 191 VLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp ECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 489999999888875 56667788888777644 56789999999999754
No 106
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=39.75 E-value=28 Score=23.27 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh
Q psy8542 96 TTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127 (182)
Q Consensus 96 ~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r 127 (182)
...+..+|...|-..++..|+.+|+..|++..
T Consensus 37 i~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 37 IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 34566677777777788899999999999754
No 107
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=39.31 E-value=16 Score=29.30 Aligned_cols=56 Identities=9% Similarity=0.093 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHH
Q psy8542 64 DAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVED 119 (182)
Q Consensus 64 daqlI~rIlk~~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eD 119 (182)
...-..++++.++-=++...-...+.||.++-..+++.-|..-|...||..|..-|
T Consensus 28 g~~kferlFR~aagLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~D 83 (171)
T 1r4v_A 28 GFDKLDHYFRTELDIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALAD 83 (171)
T ss_dssp THHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGG
T ss_pred ChHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecccc
Confidence 44567888887666678889999999999999999999999999999998765443
No 108
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=38.92 E-value=23 Score=28.35 Aligned_cols=31 Identities=13% Similarity=0.316 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q psy8542 94 NYTTTILEDSRVYANHAKKKTVDVEDIKLAI 124 (182)
Q Consensus 94 ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI 124 (182)
+....+++.|..+|...++..|+.+|++.|+
T Consensus 247 ~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 247 ADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 4556788999999988888999999999886
No 109
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=37.69 E-value=50 Score=29.81 Aligned_cols=45 Identities=9% Similarity=0.036 Sum_probs=34.4
Q ss_pred ccChHHHHHHHHHHH-------------HHHHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q psy8542 79 NYDPRCVQQMLEFVN-------------NYTTTILEDSRVYANHAKKKTVDVEDIKLA 123 (182)
Q Consensus 79 r~sp~v~~qLle~~~-------------ry~~~Vl~dA~~yA~HAgRktI~~eDVrLA 123 (182)
.+++++...+.++.. |....++.-|.++|...||..|+.+||++|
T Consensus 225 ~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~~a 282 (500)
T 3nbx_X 225 TLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLILL 282 (500)
T ss_dssp BCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGGGG
T ss_pred cCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHHHH
Confidence 366666666666652 445568888999999999999999999943
No 110
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=37.52 E-value=49 Score=25.36 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=46.6
Q ss_pred HHHHHHHHHHc-CCCccChHHHHHHHHHHHhhhcccccccHhhhhhhh-------hHHHHHHHH
Q psy8542 17 AQVIVNMFQEA-GIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAR-------DAQVIVNMF 72 (182)
Q Consensus 17 a~~i~~il~~~-gi~~yep~v~~qll~f~yryt~~vL~DA~vys~har-------daqlI~rIl 72 (182)
.|++..|..+. |-.-|+...+.-|=|-+=-|-.++++|+...+.|++ |.+++.+|-
T Consensus 69 ~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rir 132 (136)
T 1tzy_C 69 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 (136)
T ss_dssp HHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHh
Confidence 46777776665 555699999999999999999999999999999975 777777763
No 111
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=35.04 E-value=40 Score=23.05 Aligned_cols=32 Identities=19% Similarity=0.384 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh
Q psy8542 96 TTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127 (182)
Q Consensus 96 ~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r 127 (182)
...+..+|...|-..++..|+.+|+..|++..
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 44567777777777778899999999999754
No 112
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=33.84 E-value=64 Score=28.14 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=43.6
Q ss_pred HHHHHHHHhcCCcccChHHHHHHHHHHH---HHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhc
Q psy8542 66 QVIVNMFQEAGIKNYDPRCVQQMLEFVN---NYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQL 128 (182)
Q Consensus 66 qlI~rIlk~~Gv~r~sp~v~~qLle~~~---ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r~ 128 (182)
.++.+.++..|+. +++++...+.+.+. |.+..+++.+..+|...|+ .|+.++++.+++...
T Consensus 270 ~iL~~~~~~~~~~-i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 270 SIARKMLEIEHGE-LPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHHHHTCC-CCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTTT
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHh
Confidence 3455555556763 78888887776653 4566778888888876665 699999999987544
No 113
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=32.95 E-value=47 Score=24.10 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcC----CCccChHHHHHHHHHHHhhhcccccccHhhhhhhh-------hHHHHHHH
Q psy8542 17 AQVIVNMFQEAG----IKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAR-------DAQVIVNM 71 (182)
Q Consensus 17 a~~i~~il~~~g----i~~yep~v~~qll~f~yryt~~vL~DA~vys~har-------daqlI~rI 71 (182)
.|++..|..+.. -.-|+...+.-|=|-+=-|-.++++|+...+.|++ |.+++++|
T Consensus 34 ~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 99 (100)
T 2yfv_A 34 ARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRI 99 (100)
T ss_dssp HHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred HHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence 477777776653 34689999999999999999999999999999975 66666654
No 114
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=32.61 E-value=56 Score=23.79 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh
Q psy8542 95 YTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127 (182)
Q Consensus 95 y~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r 127 (182)
-+..+++.|...|...|...|+.+.+-+|+-.-
T Consensus 85 ~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~ 117 (146)
T 3fh2_A 85 RAKKVLELSLREGLQMGHKYIGTEFLLLGLIRE 117 (146)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhC
Confidence 356789999999999999999999999999543
No 115
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=30.92 E-value=69 Score=25.99 Aligned_cols=54 Identities=11% Similarity=0.245 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCcccChHHHHHHHHHHHH---HHHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q psy8542 66 QVIVNMFQEAGIKNYDPRCVQQMLEFVNN---YTTTILEDSRVYANHAKKKTVDVEDIKLAI 124 (182)
Q Consensus 66 qlI~rIlk~~Gv~r~sp~v~~qLle~~~r---y~~~Vl~dA~~yA~HAgRktI~~eDVrLAI 124 (182)
+.+..++++.|+. +++++...+.+.+.. .+..+++.+..++ ..+|+.+||+.++
T Consensus 185 ~~l~~~~~~~~~~-~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 185 HQLEHILNEEHIA-HEPRALQLLARAAEGSLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp HHHHHHHHHHTCC-BCHHHHHHHHHHSSSCHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHCCCCHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 3555566667764 788888888777543 4444555554443 3579998887664
No 116
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=29.67 E-value=32 Score=19.75 Aligned_cols=18 Identities=17% Similarity=0.625 Sum_probs=10.3
Q ss_pred cCCcccChHHHHHHHHHH
Q psy8542 75 AGIKNYDPRCVQQMLEFV 92 (182)
Q Consensus 75 ~Gv~r~sp~v~~qLle~~ 92 (182)
.|++|+++.-+++|++-+
T Consensus 4 sgvtrfdekqieelldnc 21 (31)
T 4h62_V 4 SGVTRFDEKQIEELLDNC 21 (31)
T ss_dssp ------CHHHHHHHHHHH
T ss_pred CccccccHHHHHHHHHHH
Confidence 589999999999998865
No 117
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=29.46 E-value=70 Score=25.16 Aligned_cols=55 Identities=11% Similarity=0.158 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q psy8542 67 VIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAI 124 (182)
Q Consensus 67 lI~rIlk~~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI 124 (182)
.+..++++.|+. +++++...|.+.+......++.....++.. ...|+.+||+..+
T Consensus 169 ~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~ 223 (319)
T 2chq_A 169 RLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQIT 223 (319)
T ss_dssp HHHHHHHTTCCC-BCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHT
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHH
Confidence 455556667764 889998888877665444444433333332 3468888887654
No 118
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=28.20 E-value=47 Score=30.70 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhhcCCCCCCHHHHHHHHH
Q psy8542 98 TILEDSRVYANHAKKKTVDVEDIKLAIT 125 (182)
Q Consensus 98 ~Vl~dA~~yA~HAgRktI~~eDVrLAI~ 125 (182)
.+++-|.++|.-.||..|+.+||+.|+.
T Consensus 454 aLiRlA~A~A~L~gR~~V~~eDV~~Ai~ 481 (506)
T 3f8t_A 454 SVERLAKAHARMRLSDDVEPEDVDIAAE 481 (506)
T ss_dssp HHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCCCHHHHHHHHH
Confidence 4455577889999999999999999997
No 119
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=28.00 E-value=63 Score=23.13 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhhcCCCCCCHHHHHHHHH
Q psy8542 96 TTTILEDSRVYANHAKKKTVDVEDIKLAIT 125 (182)
Q Consensus 96 ~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~ 125 (182)
+..+++.|...|...|...|+.+.+-+|+-
T Consensus 87 ~~~vl~~A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 87 LVRVLNLCDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHH
Confidence 556888899999988999999999999996
No 120
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=26.89 E-value=33 Score=31.52 Aligned_cols=31 Identities=32% Similarity=0.311 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q psy8542 96 TTTILEDSRVYANHAKKKTVDVEDIKLAITN 126 (182)
Q Consensus 96 ~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~ 126 (182)
...+++-|.+.|.-.++..|+.+||+.|++-
T Consensus 556 l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l 586 (595)
T 3f9v_A 556 LEALIRISEAYAKMALKAEVTREDAERAINI 586 (595)
T ss_dssp TTHHHHHHHHHHHTTSSCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 4466777888899999999999999999974
No 121
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=25.24 E-value=73 Score=24.52 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhh-hcCCCCCCHHHHHHHHH
Q psy8542 96 TTTILEDSRVYAN-HAKKKTVDVEDIKLAIT 125 (182)
Q Consensus 96 ~~~Vl~dA~~yA~-HAgRktI~~eDVrLAI~ 125 (182)
+..+++.|...|. ..|...|+.+.+-+|+-
T Consensus 103 l~~vL~~A~~~A~l~~gd~~I~teHLLLALl 133 (171)
T 3zri_A 103 LVELLQEAWLLSSTELEQAELRSGAIFLAAL 133 (171)
T ss_dssp HHHHHHHHHHHHHTTTCCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEcHHHHHHHHH
Confidence 4678999999999 99999999999999995
No 122
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=24.51 E-value=55 Score=24.78 Aligned_cols=36 Identities=14% Similarity=0.302 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhhhcccccccHhhhhhhhhHHHHHHHHHhcCCcccChHH
Q psy8542 34 PRCVQQMLEFVNNYTTTILEDSRVYANHARDAQVIVNMFQEAGIKNYDPRC 84 (182)
Q Consensus 34 p~v~~qll~f~yryt~~vL~DA~vys~hardaqlI~rIlk~~Gv~r~sp~v 84 (182)
.+++..++||+.+|||-.. =+.+++.+|+..+++..
T Consensus 31 ~kIv~pv~el~~~hTTvSV---------------ERtVlr~mGidgvda~~ 66 (121)
T 3kp1_E 31 EKIVDPLLDLGKKNTTPSI---------------ERSVLLRMGFSSLEAKA 66 (121)
T ss_dssp HHHHHHHHHHHHHEECHHH---------------HHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHH---------------HHHHHHHhCCCccchHH
Confidence 5788999999999987543 35678889998887774
No 123
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=24.29 E-value=1e+02 Score=25.03 Aligned_cols=20 Identities=20% Similarity=0.474 Sum_probs=16.8
Q ss_pred CCCccChHHHHHHHHHHHhh
Q psy8542 28 GIKNYDPRCVQQMLEFVNNY 47 (182)
Q Consensus 28 gi~~yep~v~~qll~f~yry 47 (182)
-+.+.+|.+...||+|.|--
T Consensus 217 ~l~~~~~~~f~~~L~~iYt~ 236 (312)
T 3hqi_A 217 EINDVEPEVFKEMMCFIYTG 236 (312)
T ss_dssp EECSSCHHHHHHHHHHHHHS
T ss_pred EecCCCHHHHHHHHHhhcCC
Confidence 45678999999999999853
No 124
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=23.91 E-value=1.9e+02 Score=22.66 Aligned_cols=53 Identities=8% Similarity=0.171 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCcccChHHHHHHHHHHHHHH---HHHHHHHHHHhhhcCCCCCCHHHHHHHHH
Q psy8542 67 VIVNMFQEAGIKNYDPRCVQQMLEFVNNYT---TTILEDSRVYANHAKKKTVDVEDIKLAIT 125 (182)
Q Consensus 67 lI~rIlk~~Gv~r~sp~v~~qLle~~~ry~---~~Vl~dA~~yA~HAgRktI~~eDVrLAI~ 125 (182)
.+..+++..|+. +++++...+.+.+.... ..+++.+. .. ...|+.+||..++.
T Consensus 174 ~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~a~~~l~~~~---~~--~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 174 RLLQIIKLEDVK-YTNDGLEAIIFTAEGDMRQAINNLQSTV---AG--HGLVNADNVFKIVD 229 (323)
T ss_dssp HHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHHH---HH--HSSBCHHHHHHHHT
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH---hc--CCCcCHHHHHHHHC
Confidence 444555566764 88888888888876433 34444433 22 24688998887764
No 125
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=22.51 E-value=1.2e+02 Score=23.64 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=34.4
Q ss_pred hcCCc-ccChHHHHHHHHHHH-----------HHHHHHHHHHHHH-----hhhcCCC-CCCHHHHHHHHHH
Q psy8542 74 EAGIK-NYDPRCVQQMLEFVN-----------NYTTTILEDSRVY-----ANHAKKK-TVDVEDIKLAITN 126 (182)
Q Consensus 74 ~~Gv~-r~sp~v~~qLle~~~-----------ry~~~Vl~dA~~y-----A~HAgRk-tI~~eDVrLAI~~ 126 (182)
..|.+ .+++++...|.+.+. |.+..+++.+... +...|++ +|+.+||+.|++.
T Consensus 228 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 228 TEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred hcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 34543 689999999998875 3345566655532 2222222 5999999999864
No 126
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=22.50 E-value=34 Score=26.79 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q psy8542 94 NYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126 (182)
Q Consensus 94 ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~ 126 (182)
+-...++..|..+|...+++.|+.+|++.|++.
T Consensus 220 ~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 252 (268)
T 2r62_A 220 ADLANIINEAALLAGRNNQKEVRQQHLKEAVER 252 (268)
T ss_dssp HHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHH
Confidence 456678888888888888899999999988863
No 127
>2gqc_A Rhomboid intramembrane protease; alpha-beta domain, hydrolase; NMR {Pseudomonas aeruginosa}
Probab=22.13 E-value=31 Score=23.04 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=17.5
Q ss_pred CCCchHHHHHHHHHHcCCC
Q psy8542 12 KLPRDAQVIVNMFQEAGIK 30 (182)
Q Consensus 12 ~~prda~~i~~il~~~gi~ 30 (182)
+.||||+...-.|+++||.
T Consensus 10 ~~~r~aqaf~dyL~~~~I~ 28 (70)
T 2gqc_A 10 PLSVDLAGFVGLLRRLNVP 28 (70)
T ss_dssp CTTTTGGGHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHCCCc
Confidence 5799999999999999995
No 128
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.10 E-value=1.2e+02 Score=27.46 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh
Q psy8542 93 NNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127 (182)
Q Consensus 93 ~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r 127 (182)
-.-...+..+|..+|-..+++.|+.+|+..|++..
T Consensus 416 GADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 416 GAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 34567888899989988899999999999999754
No 129
>3rq9_A TSI2, type VI secretion immunity protein; antitoxin, TSE2-BI protein; 1.00A {Pseudomonas aeruginosa} PDB: 3vpv_A
Probab=21.80 E-value=45 Score=23.48 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCCCCCCCChhhhhcc
Q psy8542 117 VEDIKLAITNQLSGSFAKPPPRESKGSG 144 (182)
Q Consensus 117 ~eDVrLAI~~r~~~~F~~pppke~Ll~l 144 (182)
+||+++|-+.... ++++-||.+.|.+.
T Consensus 48 AdDLk~AY~~a~~-~Ys~LPpY~~Li~~ 74 (85)
T 3rq9_A 48 ADDLKNAYEQALG-QYSGLPPYDRLIEE 74 (85)
T ss_dssp HHHHHHHHHHHHH-HCSSCCCHHHHTSC
T ss_pred hHHHHHHHHHHHH-hhcCCCCHHHHhhC
Confidence 6899999876544 68899999999876
No 130
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.52 E-value=1.4e+02 Score=26.93 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q psy8542 93 NNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126 (182)
Q Consensus 93 ~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~ 126 (182)
-.-...+..+|..+|-..++..|+.+|+..|++.
T Consensus 389 GADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 389 GADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 3456778889988888889999999999999974
No 131
>2ll0_A Uncharacterized protein; structural genomics, joint center for structural genomics, J unknown function; NMR {Paracoccus denitrificans}
Probab=21.35 E-value=1.1e+02 Score=22.54 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=32.3
Q ss_pred hhhhHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHH
Q psy8542 61 HARDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTIL 100 (182)
Q Consensus 61 hardaqlI~rIlk~~Gv~r~sp~v~~qLle~~~ry~~~Vl 100 (182)
.|.|..+++++..+.|+..-+.++...+.+++..-..+|.
T Consensus 62 e~gdedv~rkv~~DLg~~~se~~iR~km~e~l~~A~~q~~ 101 (104)
T 2ll0_A 62 EPGDEDVFRKLAADLEGKADEETIRAKMVELRATAREQII 101 (104)
T ss_dssp CCCTTHHHHHHHHHHTTTCCHHHHHHHHHHTHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999988888888888888765554443
No 132
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.29 E-value=1.4e+02 Score=26.42 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh
Q psy8542 94 NYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQ 127 (182)
Q Consensus 94 ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~~r 127 (182)
.-...+..+|..+|-..++..|+.+|+..|++..
T Consensus 356 ADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v 389 (405)
T 4b4t_J 356 ADVKGVCTEAGMYALRERRIHVTQEDFELAVGKV 389 (405)
T ss_dssp HHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 4567788888888888889999999999999753
No 133
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=20.92 E-value=1e+02 Score=28.45 Aligned_cols=58 Identities=14% Similarity=0.314 Sum_probs=43.6
Q ss_pred HHHHHcCCCccChHHHHHHHHHHHhhhcccccccHhhhhhhhhHHHHHHHHHhcCCcccChHHHHHH
Q psy8542 22 NMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHARDAQVIVNMFQEAGIKNYDPRCVQQM 88 (182)
Q Consensus 22 ~il~~~gi~~yep~v~~qll~f~yryt~~vL~DA~vys~hardaqlI~rIlk~~Gv~r~sp~v~~qL 88 (182)
-.|..+||.-|=..=|...|+..||+-.. ...-.++.+.=|+|+..|. .+|++|...+
T Consensus 74 D~lqrLGi~~hF~~EI~~~L~~i~~~~~~--------~~dl~~~al~FRLLR~hGy-~VS~dvf~~F 131 (550)
T 3m00_A 74 DTIERLGISYHFEKEIDDILDQIYNQNSN--------CNDLCTSALQFRLLRQHGF-NISPEIFSKF 131 (550)
T ss_dssp HHHHHTTCGGGCHHHHHHHHHHHHHHCCC--------CSSHHHHHHHHHHHHHTTC-CCCGGGGGGG
T ss_pred HHHHHcCchhhhHHHHHHHHHHHHHhccc--------CCCHHHHHHHHHHHHhcCC-CCChHHhhhc
Confidence 35788999999999999999999997543 1334566778889999886 4666665544
No 134
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=20.75 E-value=1.2e+02 Score=23.81 Aligned_cols=54 Identities=11% Similarity=0.148 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q psy8542 67 VIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123 (182)
Q Consensus 67 lI~rIlk~~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLA 123 (182)
.+..+++..|+. +++++...+.+.+.......+......+..+ ..|+.+||..+
T Consensus 177 ~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~~i~~~~v~~~ 230 (327)
T 1iqp_A 177 RLRYIAENEGLE-LTEEGLQAILYIAEGDMRRAINILQAAAALD--KKITDENVFMV 230 (327)
T ss_dssp HHHHHHHTTTCE-ECHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SEECHHHHHHH
T ss_pred HHHHHHHhcCCC-CCHHHHHHHHHHCCCCHHHHHHHHHHHHhcC--CCCCHHHHHHH
Confidence 445555566764 8888888888776544443333322222222 35666666544
No 135
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=20.43 E-value=3.7e+02 Score=24.59 Aligned_cols=50 Identities=24% Similarity=0.461 Sum_probs=39.1
Q ss_pred ccChHHHHHHHHHHHHH---------HHHHHHHHHHHhhh----cCCCCCCHHHHHHHHHHhc
Q psy8542 79 NYDPRCVQQMLEFVNNY---------TTTILEDSRVYANH----AKKKTVDVEDIKLAITNQL 128 (182)
Q Consensus 79 r~sp~v~~qLle~~~ry---------~~~Vl~dA~~yA~H----AgRktI~~eDVrLAI~~r~ 128 (182)
.++++++..+.+.+.+| +.+++.+|...+.. .++..|+.+||..++....
T Consensus 372 ~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 372 RYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp CCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 47899999999999997 44667777666554 3567899999999998654
No 136
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=20.17 E-value=89 Score=27.66 Aligned_cols=56 Identities=13% Similarity=0.246 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHH
Q psy8542 67 VIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAIT 125 (182)
Q Consensus 67 lI~rIlk~~Gv~r~sp~v~~qLle~~~ry~~~Vl~dA~~yA~HAgRktI~~eDVrLAI~ 125 (182)
.+.+++...|+. +++++...+.+.+..-...++......+ .++++|+.+||+.++.
T Consensus 217 ~L~~i~~~~~~~-i~~~~l~~la~~s~GdiR~~i~~L~~~~--~~~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 217 RLMTIAIREKFK-LDPNVIDRLIQTTRGDIRQVINLLSTIS--TTTKTINHENINEISK 272 (516)
T ss_dssp HHHHHHHHHTCC-CCTTHHHHHHHHTTTCHHHHHHHHTHHH--HHSSCCCTTHHHHHHH
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHHHHHH--hcCCCCchHHHHHHHH
Confidence 455566666775 8889988888776433333333332223 2567899999988876
No 137
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=20.08 E-value=73 Score=21.45 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=33.7
Q ss_pred HHHHhhhcccccccHhhhhhhhhHHHHHHHHHhcCCcccChHHHHHHHHH
Q psy8542 42 EFVNNYTTTILEDSRVYANHARDAQVIVNMFQEAGIKNYDPRCVQQMLEF 91 (182)
Q Consensus 42 ~f~yryt~~vL~DA~vys~hardaqlI~rIlk~~Gv~r~sp~v~~qLle~ 91 (182)
|++|-|..=+|-|.. ..-.+.-|..|++..|+ .+++.-+..|...
T Consensus 6 ela~~YAAllL~~~g----~~~ta~~I~~il~AaGv-eve~~~~~lf~~a 50 (69)
T 2lbf_A 6 ELACIYSALILHDDE----VTVTEDKINALIKAAGV-NVEPFWPGLFAKA 50 (69)
T ss_dssp HHHHHHHHHHHHHHT----CCCCHHHHHHHHHHHTC-CCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC----CCCCHHHHHHHHHHcCC-CccHHHHHHHHHH
Confidence 788999888888873 23456678999999999 4777766665554
Done!