RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8542
(182 letters)
>d1tafa_ a.22.1.3 (A:) TAF(II)42 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 68
Score = 92.4 bits (230), Expect = 5e-26
Identities = 33/66 (50%), Positives = 52/66 (78%)
Query: 63 RDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKL 122
+DAQVI+++ +E ++ Y+PR V Q+LEF Y T+IL+D++VYANHA+KKT+D++D++L
Sbjct: 2 KDAQVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRL 61
Query: 123 AITNQL 128
A L
Sbjct: 62 ATEVTL 67
Score = 74.7 bits (184), Expect = 5e-19
Identities = 27/57 (47%), Positives = 43/57 (75%)
Query: 14 PRDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHARDAQVIVN 70
P+DAQVI+++ +E ++ Y+PR V Q+LEF Y T+IL+D++VYANHAR + ++
Sbjct: 1 PKDAQVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLD 57
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 151
Score = 44.4 bits (105), Expect = 9e-07
Identities = 17/72 (23%), Positives = 30/72 (41%)
Query: 58 YANHARDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDV 117
Y + + + AGI+ V + + T + E + YA+ +KTV
Sbjct: 75 YDGELFGRATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQG 134
Query: 118 EDIKLAITNQLS 129
ED++ AIT +
Sbjct: 135 EDVEKAITYSMP 146
Score = 35.1 bits (81), Expect = 0.002
Identities = 7/45 (15%), Positives = 17/45 (37%)
Query: 86 QQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQLSG 130
+ +FV + ++ + + KKT+ E +K +
Sbjct: 26 DTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVE 70
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 82
Score = 42.1 bits (99), Expect = 2e-06
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
I + + G+K ++ + + ++ D+ Y HAK+KTV D+ A
Sbjct: 15 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYA 70
Score = 25.5 bits (56), Expect = 1.6
Identities = 7/44 (15%), Positives = 18/44 (40%)
Query: 20 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAR 63
I + + G+K ++ + + ++ D+ Y HA+
Sbjct: 15 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAK 58
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus
fervidus, histone A [TaxId: 2180]}
Length = 68
Score = 37.8 bits (88), Expect = 4e-05
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 68 IVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAI 124
I + + AG + + + + I ++ A HA +KT+ EDI+LA
Sbjct: 9 IGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELAR 65
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 95
Score = 35.9 bits (83), Expect = 4e-04
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 85 VQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
+Q+ E Y + ED+ + A HAK+ T+ +DI+LA
Sbjct: 52 LQEASE---AYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 87
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus
horikoshii) [TaxId: 53953]}
Length = 66
Score = 34.7 bits (80), Expect = 5e-04
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 67 VIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126
+ + ++AG + + + + E++ Y I + + +A HA +KTV VEDIKLAI +
Sbjct: 7 PVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 66
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 34.4 bits (79), Expect = 0.004
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 94 NYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126
+ IL+ + Y + + + +DIK+A+
Sbjct: 131 YISADILKLAGNYVRNIRHYEITKQDIKVAMCA 163
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 28.6 bits (64), Expect = 0.094
Identities = 5/37 (13%), Positives = 14/37 (37%)
Query: 88 MLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAI 124
+ + + ++L+ + KT+ +K I
Sbjct: 29 ISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCI 65
>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 70
Score = 27.3 bits (61), Expect = 0.24
Identities = 12/53 (22%), Positives = 29/53 (54%)
Query: 71 MFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLA 123
+ + G+ + +++ E V+ I++D+ + NHAK++ + V DI ++
Sbjct: 15 IAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMS 67
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta
(Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 27.9 bits (62), Expect = 0.28
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 88 MLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQLSGSFAKP 135
+ E V+ + + I ++ + K+KT++ EDI A++ S+ +P
Sbjct: 30 VQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEP 77
>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone
fold domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 27.0 bits (60), Expect = 0.42
Identities = 9/42 (21%), Positives = 24/42 (57%)
Query: 81 DPRCVQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKL 122
D + +L+ +++ +++ + A H K T++V+D++L
Sbjct: 23 DEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQL 64
>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 92
Score = 26.6 bits (59), Expect = 0.82
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 85 VQQMLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITNQLSGSFAK 134
+ M FVN+ I ++ A++ K+ T+ +I+ A+ L G AK
Sbjct: 27 MGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAK 76
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma
(Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 25.6 bits (56), Expect = 1.3
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 88 MLEFVNNYTTTILEDSRVYANHAKKKTVDVEDIKLAITN 126
+ + T + + ++ K++T+ DI +AIT
Sbjct: 27 FAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITK 65
>d1gph11 c.61.1.1 (1:235-465) Glutamine PRPP amidotransferase,
C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 25.0 bits (54), Expect = 6.0
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 44 VNNYTTTILEDSRVYANHARDAQVIVNMFQEAGIKNYDPRCVQQMLEFVNNYTTTILEDS 103
V +++DS V +R IV M +EAG + + Y
Sbjct: 102 VEGKRVVMVDDSIVRGTTSRR---IVTMLREAGATEVHVKISSPPIAHPCFYGIDTSTHE 158
Query: 104 RVYANH 109
+ A+
Sbjct: 159 ELIASS 164
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.126 0.347
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 590,115
Number of extensions: 25075
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 20
Length of query: 182
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,309,196
Effective search space: 133537992
Effective search space used: 133537992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.1 bits)