Query psy8544
Match_columns 364
No_of_seqs 223 out of 1658
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 21:35:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8544.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8544hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00434 cytosolic glyceraldeh 100.0 2E-121 5E-126 896.6 30.3 336 1-336 2-358 (361)
2 PRK15425 gapA glyceraldehyde-3 100.0 4E-116 1E-120 857.0 35.7 329 1-331 1-331 (331)
3 PTZ00023 glyceraldehyde-3-phos 100.0 7E-116 2E-120 857.3 34.2 332 1-332 1-336 (337)
4 PLN02237 glyceraldehyde-3-phos 100.0 1E-115 2E-120 873.9 33.3 331 1-333 74-412 (442)
5 PRK07403 glyceraldehyde-3-phos 100.0 2E-114 4E-119 846.7 34.2 328 3-332 2-335 (337)
6 PLN02272 glyceraldehyde-3-phos 100.0 7E-114 2E-118 859.5 35.9 333 3-335 86-420 (421)
7 PRK07729 glyceraldehyde-3-phos 100.0 2E-113 3E-118 841.2 34.2 331 1-333 1-334 (343)
8 PLN03096 glyceraldehyde-3-phos 100.0 3E-112 7E-117 843.7 33.9 330 1-332 59-393 (395)
9 PLN02358 glyceraldehyde-3-phos 100.0 2E-111 5E-116 827.6 35.7 330 2-331 5-337 (338)
10 PTZ00353 glycosomal glyceralde 100.0 1E-111 3E-116 827.3 33.8 330 1-332 1-336 (342)
11 PRK08955 glyceraldehyde-3-phos 100.0 2E-110 3E-115 820.5 32.2 328 1-331 1-332 (334)
12 PRK13535 erythrose 4-phosphate 100.0 3E-110 7E-115 818.5 33.4 327 3-331 2-334 (336)
13 COG0057 GapA Glyceraldehyde-3- 100.0 2E-109 5E-114 798.9 32.4 329 2-332 1-333 (335)
14 TIGR01534 GAPDH-I glyceraldehy 100.0 4E-109 8E-114 808.7 32.7 319 4-324 1-327 (327)
15 PRK08289 glyceraldehyde-3-phos 100.0 1E-107 2E-112 818.2 33.6 334 2-338 127-477 (477)
16 TIGR01532 E4PD_g-proteo D-eryt 100.0 1E-105 3E-110 784.3 32.7 319 4-324 1-325 (325)
17 KOG0657|consensus 100.0 1.8E-89 3.8E-94 641.5 12.3 284 13-332 1-285 (285)
18 TIGR01546 GAPDH-II_archae glyc 100.0 7.9E-55 1.7E-59 426.5 22.8 233 5-265 1-243 (333)
19 PF02800 Gp_dh_C: Glyceraldehy 100.0 3.9E-51 8.4E-56 362.8 11.4 157 155-312 1-157 (157)
20 PRK04207 glyceraldehyde-3-phos 100.0 4.8E-47 1E-51 374.5 22.9 249 2-280 1-264 (341)
21 PF00044 Gp_dh_N: Glyceraldehy 100.0 1.6E-47 3.4E-52 337.3 12.3 148 3-150 1-151 (151)
22 PRK06901 aspartate-semialdehyd 100.0 2.1E-45 4.6E-50 356.2 21.1 232 2-265 3-255 (322)
23 smart00846 Gp_dh_N Glyceraldeh 100.0 9.5E-43 2.1E-47 306.6 17.0 147 3-150 1-149 (149)
24 COG0136 Asd Aspartate-semialde 100.0 3.4E-41 7.3E-46 327.6 20.5 235 2-264 1-270 (334)
25 TIGR01745 asd_gamma aspartate- 100.0 2.7E-41 5.8E-46 334.1 17.6 234 3-264 1-298 (366)
26 TIGR01296 asd_B aspartate-semi 100.0 1.2E-39 2.5E-44 321.7 18.4 233 4-264 1-272 (339)
27 PRK14874 aspartate-semialdehyd 100.0 3.2E-39 7E-44 317.9 21.4 229 3-264 2-269 (334)
28 PRK06728 aspartate-semialdehyd 100.0 2.5E-38 5.4E-43 311.9 20.2 233 2-264 5-277 (347)
29 PRK06598 aspartate-semialdehyd 100.0 1.4E-37 3.1E-42 308.3 20.6 236 2-264 1-300 (369)
30 PRK08040 putative semialdehyde 100.0 6E-33 1.3E-37 273.2 21.1 235 2-264 4-268 (336)
31 PRK05671 aspartate-semialdehyd 100.0 3.4E-32 7.4E-37 268.2 19.2 235 2-264 4-269 (336)
32 PLN02383 aspartate semialdehyd 100.0 6.6E-31 1.4E-35 259.9 20.8 233 2-264 7-277 (344)
33 TIGR00978 asd_EA aspartate-sem 100.0 4.3E-30 9.3E-35 253.8 22.2 254 3-282 1-282 (341)
34 PRK08664 aspartate-semialdehyd 100.0 1E-29 2.3E-34 251.8 23.9 238 1-265 2-268 (349)
35 PRK00436 argC N-acetyl-gamma-g 99.9 8.4E-26 1.8E-30 223.5 22.9 295 1-331 1-329 (343)
36 TIGR01850 argC N-acetyl-gamma- 99.9 1.8E-24 4E-29 214.2 18.0 292 3-332 1-333 (346)
37 PLN02968 Probable N-acetyl-gam 99.9 9.5E-24 2.1E-28 211.5 21.3 243 1-271 37-310 (381)
38 KOG4777|consensus 99.9 4.1E-24 8.8E-29 199.7 9.5 224 4-264 5-277 (361)
39 PRK11863 N-acetyl-gamma-glutam 99.9 2.5E-21 5.3E-26 189.1 18.9 222 1-272 1-245 (313)
40 TIGR01851 argC_other N-acetyl- 99.8 9E-18 1.9E-22 163.5 17.0 216 3-264 2-237 (310)
41 PRK08300 acetaldehyde dehydrog 99.6 7E-16 1.5E-20 149.9 9.7 153 2-180 4-160 (302)
42 TIGR03215 ac_ald_DH_ac acetald 99.5 4.5E-13 9.7E-18 129.7 12.9 149 2-181 1-155 (285)
43 COG0002 ArgC Acetylglutamate s 99.2 7.2E-10 1.6E-14 109.0 19.3 294 1-329 1-333 (349)
44 PF02774 Semialdhyde_dhC: Semi 99.1 2.6E-10 5.6E-15 103.7 9.3 105 159-264 1-133 (184)
45 PF01118 Semialdhyde_dh: Semia 99.1 5E-11 1.1E-15 100.9 2.2 112 4-139 1-119 (121)
46 smart00859 Semialdhyde_dh Semi 98.3 1.1E-06 2.4E-11 74.0 6.4 111 4-139 1-121 (122)
47 PRK13301 putative L-aspartate 98.0 1E-05 2.2E-10 77.7 6.8 143 1-178 1-148 (267)
48 PRK13303 L-aspartate dehydroge 97.8 6.3E-05 1.4E-09 72.3 8.0 91 3-122 2-93 (265)
49 TIGR01921 DAP-DH diaminopimela 97.8 0.00055 1.2E-08 67.8 14.7 87 2-120 3-90 (324)
50 KOG4354|consensus 97.8 0.0003 6.6E-09 66.7 11.6 288 2-330 19-325 (340)
51 COG1712 Predicted dinucleotide 97.6 0.00016 3.5E-09 67.9 7.7 92 3-123 1-94 (255)
52 PRK06270 homoserine dehydrogen 97.6 0.00032 7E-09 69.8 9.0 150 1-177 1-176 (341)
53 PF01113 DapB_N: Dihydrodipico 97.3 0.0003 6.5E-09 59.9 4.6 92 3-116 1-94 (124)
54 TIGR00036 dapB dihydrodipicoli 97.2 0.00061 1.3E-08 65.5 6.2 94 3-119 2-97 (266)
55 PRK13302 putative L-aspartate 97.2 0.00097 2.1E-08 64.3 7.3 86 2-115 6-93 (271)
56 PRK13304 L-aspartate dehydroge 97.2 0.00098 2.1E-08 64.0 7.1 88 3-119 2-91 (265)
57 COG0289 DapB Dihydrodipicolina 97.1 0.0025 5.3E-08 61.2 8.6 100 1-123 1-103 (266)
58 PRK06813 homoserine dehydrogen 97.1 0.0011 2.4E-08 66.2 6.5 34 1-34 1-44 (346)
59 PRK00048 dihydrodipicolinate r 97.1 0.001 2.2E-08 63.6 5.9 84 2-115 1-86 (257)
60 PRK08374 homoserine dehydrogen 97.0 0.001 2.2E-08 66.1 5.5 98 1-114 1-116 (336)
61 PF01408 GFO_IDH_MocA: Oxidore 96.9 0.0037 8E-08 51.7 7.1 92 3-123 1-95 (120)
62 PRK06349 homoserine dehydrogen 96.8 0.0019 4E-08 66.3 5.9 92 2-122 3-105 (426)
63 PRK09414 glutamate dehydrogena 96.8 0.0067 1.4E-07 62.6 9.6 99 3-119 233-341 (445)
64 PRK06392 homoserine dehydrogen 96.8 0.0033 7E-08 62.4 6.9 32 3-34 1-40 (326)
65 PRK11579 putative oxidoreducta 96.7 0.0085 1.8E-07 59.3 9.3 92 2-123 4-97 (346)
66 PLN02775 Probable dihydrodipic 96.6 0.0051 1.1E-07 59.9 6.9 100 1-122 10-113 (286)
67 PRK05447 1-deoxy-D-xylulose 5- 96.5 0.01 2.3E-07 60.0 8.8 112 3-119 2-120 (385)
68 COG0460 ThrA Homoserine dehydr 96.3 0.0091 2E-07 59.4 6.7 34 1-34 2-45 (333)
69 cd01076 NAD_bind_1_Glu_DH NAD( 96.3 0.071 1.5E-06 50.3 12.2 129 2-159 31-168 (227)
70 PF03447 NAD_binding_3: Homose 96.2 0.0027 5.9E-08 52.9 2.3 82 9-121 1-89 (117)
71 cd05211 NAD_bind_Glu_Leu_Phe_V 96.2 0.061 1.3E-06 50.4 11.3 33 2-34 23-55 (217)
72 cd05313 NAD_bind_2_Glu_DH NAD( 95.9 0.042 9.2E-07 52.8 9.0 103 3-119 39-151 (254)
73 PLN02477 glutamate dehydrogena 95.7 0.11 2.4E-06 53.3 11.5 32 3-34 207-238 (410)
74 PLN02696 1-deoxy-D-xylulose-5- 95.6 0.046 1E-06 56.4 8.5 113 3-120 58-179 (454)
75 PRK10206 putative oxidoreducta 95.6 0.026 5.6E-07 56.1 6.5 94 2-123 1-97 (344)
76 PF05368 NmrA: NmrA-like famil 95.6 0.021 4.5E-07 52.7 5.4 95 5-121 1-102 (233)
77 COG4569 MhpF Acetaldehyde dehy 95.5 0.043 9.3E-07 51.2 7.0 72 89-164 71-144 (310)
78 PLN02700 homoserine dehydrogen 95.2 0.038 8.2E-07 56.0 6.1 33 2-34 3-44 (377)
79 PTZ00079 NADP-specific glutama 95.2 0.11 2.4E-06 53.8 9.5 101 3-116 238-348 (454)
80 TIGR02130 dapB_plant dihydrodi 95.0 0.041 8.8E-07 53.4 5.6 93 3-120 1-100 (275)
81 COG0569 TrkA K+ transport syst 95.0 0.071 1.5E-06 50.1 7.1 99 3-124 1-103 (225)
82 COG4091 Predicted homoserine d 95.0 0.054 1.2E-06 54.2 6.2 86 2-101 17-113 (438)
83 PF13460 NAD_binding_10: NADH( 95.0 0.018 4E-07 50.7 2.8 30 5-34 1-31 (183)
84 CHL00194 ycf39 Ycf39; Provisio 94.9 0.063 1.4E-06 52.2 6.5 31 3-33 1-32 (317)
85 COG0673 MviM Predicted dehydro 94.7 0.16 3.4E-06 49.5 8.8 96 1-123 2-100 (342)
86 PRK05472 redox-sensing transcr 94.7 0.074 1.6E-06 49.3 6.1 94 3-123 85-180 (213)
87 PRK14031 glutamate dehydrogena 94.6 0.16 3.5E-06 52.5 8.8 99 3-114 229-336 (444)
88 PF02826 2-Hacid_dh_C: D-isome 94.4 0.05 1.1E-06 49.0 4.3 32 3-34 37-68 (178)
89 PRK07819 3-hydroxybutyryl-CoA 94.2 0.54 1.2E-05 45.6 11.3 147 4-167 7-179 (286)
90 PRK14030 glutamate dehydrogena 94.2 0.27 5.8E-06 50.9 9.4 101 3-115 229-338 (445)
91 PRK09436 thrA bifunctional asp 93.7 0.053 1.2E-06 60.2 3.5 34 1-34 464-506 (819)
92 COG2344 AT-rich DNA-binding pr 93.7 0.14 3E-06 47.2 5.5 95 2-123 84-180 (211)
93 TIGR03649 ergot_EASG ergot alk 93.6 0.24 5.1E-06 47.1 7.4 30 4-33 1-31 (285)
94 PRK07417 arogenate dehydrogena 93.5 0.27 5.8E-06 47.3 7.8 39 3-44 1-39 (279)
95 PRK09466 metL bifunctional asp 93.3 0.057 1.2E-06 59.8 3.0 33 2-34 458-500 (810)
96 PRK08229 2-dehydropantoate 2-r 93.3 0.88 1.9E-05 44.6 11.0 33 1-33 1-33 (341)
97 COG2910 Putative NADH-flavin r 93.2 0.4 8.7E-06 44.2 7.6 31 3-33 1-32 (211)
98 TIGR00243 Dxr 1-deoxy-D-xylulo 92.8 0.32 6.9E-06 49.4 7.3 110 3-121 2-124 (389)
99 PLN00016 RNA-binding protein; 92.8 0.23 5.1E-06 49.5 6.3 34 1-34 51-89 (378)
100 PRK11199 tyrA bifunctional cho 92.7 0.44 9.5E-06 48.1 8.1 30 3-32 99-129 (374)
101 cd08230 glucose_DH Glucose deh 92.6 1.6 3.4E-05 42.9 11.9 95 4-120 175-269 (355)
102 TIGR02853 spore_dpaA dipicolin 92.6 0.22 4.7E-06 48.5 5.6 31 3-33 152-182 (287)
103 cd01075 NAD_bind_Leu_Phe_Val_D 92.6 0.65 1.4E-05 42.7 8.4 35 3-40 29-63 (200)
104 COG1063 Tdh Threonine dehydrog 92.4 0.38 8.3E-06 47.9 7.2 99 4-122 171-271 (350)
105 PRK08507 prephenate dehydrogen 92.2 0.49 1.1E-05 45.3 7.5 39 3-44 1-41 (275)
106 TIGR01202 bchC 2-desacetyl-2-h 92.2 1.7 3.6E-05 42.1 11.2 84 4-119 147-230 (308)
107 PRK08410 2-hydroxyacid dehydro 92.1 0.17 3.7E-06 49.8 4.2 30 3-32 146-175 (311)
108 PRK06487 glycerate dehydrogena 91.9 0.18 3.9E-06 49.7 4.2 31 3-33 149-179 (317)
109 PLN02819 lysine-ketoglutarate 91.8 0.58 1.3E-05 53.2 8.5 91 3-115 570-674 (1042)
110 cd05213 NAD_bind_Glutamyl_tRNA 91.7 0.68 1.5E-05 45.5 7.9 30 3-32 179-209 (311)
111 PF03435 Saccharop_dh: Sacchar 91.6 0.24 5.3E-06 49.6 4.7 94 5-120 1-96 (386)
112 TIGR03366 HpnZ_proposed putati 91.4 1.9 4.1E-05 41.0 10.5 136 4-164 123-260 (280)
113 PF03807 F420_oxidored: NADP o 91.4 0.44 9.6E-06 37.7 5.3 40 4-45 1-43 (96)
114 TIGR03736 PRTRC_ThiF PRTRC sys 91.4 0.46 1E-05 45.4 6.1 105 2-110 11-127 (244)
115 PRK06932 glycerate dehydrogena 91.4 0.23 5E-06 49.0 4.2 30 3-32 148-177 (314)
116 PRK08306 dipicolinate synthase 91.2 0.57 1.2E-05 45.8 6.8 31 3-33 153-183 (296)
117 COG2085 Predicted dinucleotide 91.1 0.78 1.7E-05 42.9 7.1 91 3-122 2-93 (211)
118 PF02629 CoA_binding: CoA bind 91.0 0.22 4.7E-06 40.3 3.1 91 2-122 3-95 (96)
119 PRK07531 bifunctional 3-hydrox 90.9 2.6 5.6E-05 44.2 11.7 37 3-42 5-41 (495)
120 COG1748 LYS9 Saccharopine dehy 90.9 1.1 2.4E-05 45.7 8.7 97 3-120 2-99 (389)
121 PF00056 Ldh_1_N: lactate/mala 90.8 1.6 3.4E-05 37.9 8.5 78 3-101 1-81 (141)
122 PLN02928 oxidoreductase family 90.8 0.28 6E-06 49.1 4.2 31 3-33 160-190 (347)
123 COG0111 SerA Phosphoglycerate 90.7 0.29 6.2E-06 48.7 4.2 31 3-33 143-173 (324)
124 PF10727 Rossmann-like: Rossma 90.7 0.17 3.7E-06 43.6 2.3 32 3-34 11-42 (127)
125 cd00401 AdoHcyase S-adenosyl-L 90.6 0.7 1.5E-05 47.5 7.0 28 4-31 204-231 (413)
126 PRK07530 3-hydroxybutyryl-CoA 90.6 0.41 8.9E-06 46.2 5.1 38 3-43 5-42 (292)
127 PRK05808 3-hydroxybutyryl-CoA 90.5 1.9 4.1E-05 41.4 9.6 38 1-41 1-39 (282)
128 PF13380 CoA_binding_2: CoA bi 90.4 1.2 2.7E-05 37.4 7.2 83 4-122 2-88 (116)
129 PRK07634 pyrroline-5-carboxyla 90.4 0.68 1.5E-05 43.2 6.2 32 2-33 4-39 (245)
130 COG1052 LdhA Lactate dehydroge 90.2 0.31 6.7E-06 48.4 4.0 31 3-33 147-177 (324)
131 PRK06436 glycerate dehydrogena 90.2 0.34 7.4E-06 47.6 4.2 31 3-33 123-153 (303)
132 PRK07574 formate dehydrogenase 90.1 0.34 7.5E-06 49.3 4.3 31 3-33 193-223 (385)
133 PRK06223 malate dehydrogenase; 90.0 1.4 3.1E-05 42.7 8.4 29 3-31 3-32 (307)
134 PRK05476 S-adenosyl-L-homocyst 89.9 0.91 2E-05 46.8 7.1 29 4-32 214-242 (425)
135 PRK09880 L-idonate 5-dehydroge 89.8 1.9 4.1E-05 42.2 9.2 89 4-115 172-261 (343)
136 PRK15409 bifunctional glyoxyla 89.7 0.4 8.6E-06 47.5 4.2 29 3-31 146-175 (323)
137 PRK13243 glyoxylate reductase; 89.7 0.39 8.4E-06 47.7 4.2 31 3-33 151-181 (333)
138 PRK11559 garR tartronate semia 89.6 0.44 9.5E-06 45.9 4.4 32 1-32 1-32 (296)
139 KOG1502|consensus 89.6 2.1 4.5E-05 42.7 9.1 104 2-123 6-130 (327)
140 PRK11790 D-3-phosphoglycerate 89.6 0.39 8.5E-06 49.1 4.2 30 3-32 152-181 (409)
141 TIGR01915 npdG NADPH-dependent 89.5 0.77 1.7E-05 42.5 5.8 30 3-32 1-31 (219)
142 PRK15469 ghrA bifunctional gly 89.5 0.43 9.4E-06 47.0 4.3 31 3-33 137-167 (312)
143 PF03446 NAD_binding_2: NAD bi 89.0 0.56 1.2E-05 41.4 4.3 39 3-44 2-40 (163)
144 PRK12480 D-lactate dehydrogena 88.9 0.52 1.1E-05 46.8 4.4 31 3-33 147-177 (330)
145 PF01488 Shikimate_DH: Shikima 88.7 0.62 1.3E-05 40.0 4.2 94 3-122 13-109 (135)
146 cd01483 E1_enzyme_family Super 88.7 0.56 1.2E-05 40.2 4.0 44 4-47 1-45 (143)
147 PRK00045 hemA glutamyl-tRNA re 88.7 1.4 2.9E-05 45.3 7.5 31 3-33 183-214 (423)
148 PRK11880 pyrroline-5-carboxyla 88.6 0.56 1.2E-05 44.4 4.3 25 1-25 1-25 (267)
149 TIGR02279 PaaC-3OHAcCoADH 3-hy 88.4 0.61 1.3E-05 49.1 4.8 38 3-43 6-43 (503)
150 PLN02306 hydroxypyruvate reduc 88.4 0.56 1.2E-05 47.8 4.3 30 3-32 166-196 (386)
151 PRK15438 erythronate-4-phospha 88.4 0.54 1.2E-05 47.7 4.2 30 3-32 117-146 (378)
152 PRK08818 prephenate dehydrogen 88.1 1.2 2.5E-05 45.2 6.4 78 2-123 4-89 (370)
153 PRK08268 3-hydroxy-acyl-CoA de 88.0 0.8 1.7E-05 48.2 5.3 37 4-43 9-45 (507)
154 PRK06522 2-dehydropantoate 2-r 87.9 3.6 7.8E-05 39.3 9.4 31 3-33 1-31 (304)
155 TIGR01035 hemA glutamyl-tRNA r 87.8 1.7 3.6E-05 44.6 7.4 31 3-33 181-212 (417)
156 PF02670 DXP_reductoisom: 1-de 87.8 1.1 2.3E-05 38.9 5.1 112 5-119 1-119 (129)
157 PLN03139 formate dehydrogenase 87.8 0.58 1.3E-05 47.6 4.0 30 3-32 200-229 (386)
158 PRK00066 ldh L-lactate dehydro 87.6 1.1 2.4E-05 44.2 5.7 29 3-31 7-37 (315)
159 cd01065 NAD_bind_Shikimate_DH 87.5 2.9 6.4E-05 35.8 7.8 31 3-33 20-50 (155)
160 PLN02657 3,8-divinyl protochlo 87.2 1.5 3.3E-05 44.3 6.7 31 3-33 61-92 (390)
161 COG0451 WcaG Nucleoside-diphos 87.2 2.7 6E-05 39.7 8.1 31 4-34 2-33 (314)
162 PF00670 AdoHcyase_NAD: S-aden 87.2 2.9 6.3E-05 37.6 7.7 87 4-125 25-113 (162)
163 PLN02166 dTDP-glucose 4,6-dehy 86.8 5.4 0.00012 41.1 10.5 32 2-33 120-152 (436)
164 PRK03369 murD UDP-N-acetylmura 86.5 3.6 7.9E-05 42.9 9.2 87 3-120 13-99 (488)
165 PRK01438 murD UDP-N-acetylmura 86.5 3.4 7.3E-05 42.7 8.9 92 3-121 17-108 (480)
166 cd08242 MDR_like Medium chain 86.5 5 0.00011 38.4 9.6 82 4-114 158-239 (319)
167 PTZ00117 malate dehydrogenase; 86.3 2.5 5.5E-05 41.7 7.5 27 3-29 6-33 (319)
168 cd00755 YgdL_like Family of ac 86.1 1.2 2.7E-05 42.1 5.0 25 2-26 11-35 (231)
169 TIGR01761 thiaz-red thiazoliny 86.1 3 6.4E-05 41.8 7.9 92 2-122 3-98 (343)
170 COG0334 GdhA Glutamate dehydro 86.0 5.6 0.00012 40.8 9.9 33 3-35 208-240 (411)
171 cd08239 THR_DH_like L-threonin 85.6 2.9 6.2E-05 40.5 7.4 95 4-119 166-261 (339)
172 PTZ00082 L-lactate dehydrogena 85.5 1.4 3E-05 43.7 5.2 31 3-34 7-38 (321)
173 PRK00257 erythronate-4-phospha 85.5 0.98 2.1E-05 45.9 4.2 29 3-31 117-145 (381)
174 PRK13403 ketol-acid reductoiso 85.3 1.1 2.3E-05 44.8 4.3 32 3-34 17-48 (335)
175 PLN02260 probable rhamnose bio 85.2 3.5 7.6E-05 44.5 8.6 43 2-45 380-424 (668)
176 PRK08605 D-lactate dehydrogena 85.1 1.1 2.4E-05 44.5 4.3 30 3-32 147-177 (332)
177 PLN02214 cinnamoyl-CoA reducta 85.0 4 8.7E-05 40.1 8.3 31 3-33 11-42 (342)
178 PLN02256 arogenate dehydrogena 84.7 1.3 2.9E-05 43.4 4.7 33 2-34 36-68 (304)
179 COG0771 MurD UDP-N-acetylmuram 84.7 4.8 0.0001 41.8 8.9 87 3-115 8-95 (448)
180 TIGR01327 PGDH D-3-phosphoglyc 84.7 1.1 2.3E-05 47.4 4.2 31 3-33 139-169 (525)
181 cd08281 liver_ADH_like1 Zinc-d 84.6 3 6.4E-05 41.4 7.2 96 4-120 194-290 (371)
182 PLN02712 arogenate dehydrogena 84.6 1.2 2.6E-05 48.6 4.6 33 2-34 369-401 (667)
183 PRK12464 1-deoxy-D-xylulose 5- 84.6 1.8 3.9E-05 44.0 5.6 106 7-121 1-117 (383)
184 cd05294 LDH-like_MDH_nadp A la 84.4 2.2 4.8E-05 41.9 6.1 30 3-32 1-33 (309)
185 cd08298 CAD2 Cinnamyl alcohol 84.3 17 0.00037 34.7 12.1 84 4-117 170-253 (329)
186 PRK13581 D-3-phosphoglycerate 84.2 1.1 2.5E-05 47.2 4.2 31 3-33 141-171 (526)
187 PLN02586 probable cinnamyl alc 84.0 4.9 0.00011 39.8 8.4 30 4-33 186-215 (360)
188 PRK06718 precorrin-2 dehydroge 83.9 12 0.00026 34.4 10.4 31 3-33 11-41 (202)
189 COG0039 Mdh Malate/lactate deh 83.6 1.9 4.1E-05 42.7 5.2 22 3-24 1-22 (313)
190 PLN02712 arogenate dehydrogena 83.4 1.4 3.1E-05 48.0 4.6 32 2-33 52-83 (667)
191 PLN02662 cinnamyl-alcohol dehy 83.3 6 0.00013 37.8 8.5 30 3-32 5-35 (322)
192 KOG1203|consensus 83.2 4.2 9E-05 41.8 7.6 30 3-32 80-110 (411)
193 cd01487 E1_ThiF_like E1_ThiF_l 83.0 0.83 1.8E-05 41.1 2.2 24 4-27 1-24 (174)
194 TIGR03201 dearomat_had 6-hydro 82.8 13 0.00028 36.4 10.8 38 4-44 169-206 (349)
195 cd01336 MDH_cytoplasmic_cytoso 82.8 6.9 0.00015 38.8 8.8 31 2-32 2-40 (325)
196 PF03721 UDPG_MGDP_dh_N: UDP-g 82.8 1.4 3.1E-05 40.0 3.7 38 3-43 1-38 (185)
197 KOG2741|consensus 82.7 3.7 8E-05 41.2 6.8 96 2-122 6-104 (351)
198 COG1062 AdhC Zn-dependent alco 82.3 3.3 7.2E-05 41.6 6.3 95 4-119 188-284 (366)
199 PLN03209 translocon at the inn 82.0 6.1 0.00013 42.4 8.6 30 4-33 82-112 (576)
200 PLN02688 pyrroline-5-carboxyla 82.0 3.3 7.1E-05 39.2 6.0 32 3-34 1-36 (266)
201 cd05291 HicDH_like L-2-hydroxy 81.8 2.8 6E-05 41.0 5.6 29 4-32 2-32 (306)
202 cd01080 NAD_bind_m-THF_DH_Cycl 81.7 6.4 0.00014 35.4 7.5 31 3-33 45-76 (168)
203 COG3804 Uncharacterized conser 81.6 2 4.2E-05 42.2 4.3 34 1-34 1-35 (350)
204 TIGR01777 yfcH conserved hypot 81.4 5.8 0.00013 37.1 7.5 29 5-33 1-30 (292)
205 PRK03659 glutathione-regulated 81.2 2.8 6E-05 45.0 5.8 39 3-44 401-439 (601)
206 PRK08644 thiamine biosynthesis 80.9 0.81 1.7E-05 42.6 1.4 25 3-27 29-53 (212)
207 PRK03562 glutathione-regulated 80.7 2.9 6.4E-05 45.1 5.8 39 3-44 401-439 (621)
208 cd05293 LDH_1 A subgroup of L- 80.7 0.92 2E-05 44.8 1.8 29 3-31 4-34 (312)
209 TIGR02356 adenyl_thiF thiazole 80.6 0.95 2.1E-05 41.6 1.7 30 3-32 22-52 (202)
210 PRK09599 6-phosphogluconate de 80.5 2.1 4.7E-05 41.5 4.3 39 3-44 1-39 (301)
211 COG1064 AdhP Zn-dependent alco 80.2 11 0.00025 37.7 9.3 92 4-122 169-261 (339)
212 PRK00094 gpsA NAD(P)H-dependen 80.1 2.5 5.3E-05 40.9 4.6 31 3-33 2-32 (325)
213 TIGR03451 mycoS_dep_FDH mycoth 80.0 10 0.00022 37.2 9.0 29 4-32 179-208 (358)
214 PLN02514 cinnamyl-alcohol dehy 80.0 17 0.00036 35.9 10.5 95 4-122 183-277 (357)
215 PRK12491 pyrroline-5-carboxyla 79.9 4.3 9.2E-05 39.2 6.1 42 1-45 1-46 (272)
216 PLN02602 lactate dehydrogenase 79.5 1.1 2.3E-05 45.1 1.8 145 3-174 38-203 (350)
217 PF02737 3HCDH_N: 3-hydroxyacy 79.4 4.1 8.9E-05 36.8 5.5 35 4-41 1-35 (180)
218 COG0287 TyrA Prephenate dehydr 79.4 2.6 5.7E-05 41.0 4.4 28 1-28 2-29 (279)
219 PF02254 TrkA_N: TrkA-N domain 79.1 3.1 6.7E-05 33.9 4.2 34 5-41 1-34 (116)
220 PLN00203 glutamyl-tRNA reducta 78.8 7.9 0.00017 41.0 8.1 31 3-33 267-298 (519)
221 PF00208 ELFV_dehydrog: Glutam 78.6 2.2 4.7E-05 40.7 3.5 136 3-158 33-178 (244)
222 cd08301 alcohol_DH_plants Plan 78.6 5.9 0.00013 39.1 6.8 38 4-44 190-228 (369)
223 PRK12490 6-phosphogluconate de 78.5 2.7 5.9E-05 40.8 4.3 38 4-44 2-39 (299)
224 PLN02178 cinnamyl-alcohol dehy 78.3 14 0.0003 37.0 9.5 94 4-121 181-274 (375)
225 KOG4039|consensus 78.3 7.1 0.00015 36.1 6.5 31 3-33 19-52 (238)
226 TIGR00872 gnd_rel 6-phosphoglu 78.1 2.8 6E-05 40.8 4.2 40 3-45 1-40 (298)
227 TIGR01505 tartro_sem_red 2-hyd 78.0 2.4 5.3E-05 40.8 3.7 37 4-43 1-37 (291)
228 cd08237 ribitol-5-phosphate_DH 77.9 15 0.00032 36.0 9.4 29 4-32 166-196 (341)
229 PRK09496 trkA potassium transp 77.4 3.1 6.7E-05 42.3 4.5 31 3-33 1-31 (453)
230 TIGR02437 FadB fatty oxidation 77.2 4.7 0.0001 44.3 6.1 37 4-43 315-351 (714)
231 PRK00421 murC UDP-N-acetylmura 77.2 12 0.00025 38.6 8.7 83 3-114 8-91 (461)
232 KOG0068|consensus 77.1 2.9 6.2E-05 42.0 4.0 30 4-33 148-177 (406)
233 PRK04690 murD UDP-N-acetylmura 77.1 16 0.00035 37.9 9.8 88 3-120 9-98 (468)
234 TIGR02717 AcCoA-syn-alpha acet 76.8 9.5 0.00021 39.5 8.0 81 3-119 8-94 (447)
235 cd05283 CAD1 Cinnamyl alcohol 76.6 22 0.00047 34.4 10.1 86 4-114 172-257 (337)
236 PRK06476 pyrroline-5-carboxyla 76.6 5.5 0.00012 37.6 5.7 37 3-41 1-39 (258)
237 PRK11064 wecC UDP-N-acetyl-D-m 76.4 3.3 7.2E-05 42.4 4.4 38 3-43 4-41 (415)
238 PTZ00075 Adenosylhomocysteinas 76.3 3.3 7.1E-05 43.4 4.3 30 3-32 255-284 (476)
239 PRK05865 hypothetical protein; 76.3 8 0.00017 43.4 7.6 31 3-33 1-32 (854)
240 PRK14619 NAD(P)H-dependent gly 76.2 3.5 7.6E-05 40.2 4.3 32 2-33 4-35 (308)
241 PRK09424 pntA NAD(P) transhydr 76.1 25 0.00055 37.2 10.9 37 3-42 166-202 (509)
242 cd01486 Apg7 Apg7 is an E1-lik 76.0 1 2.2E-05 44.5 0.5 23 4-26 1-23 (307)
243 TIGR02354 thiF_fam2 thiamine b 75.8 1.5 3.2E-05 40.5 1.5 31 3-33 22-52 (200)
244 TIGR03026 NDP-sugDHase nucleot 75.4 3.4 7.4E-05 42.0 4.2 37 3-42 1-37 (411)
245 PRK10669 putative cation:proto 75.4 5.3 0.00012 42.3 5.8 35 4-41 419-453 (558)
246 PRK11730 fadB multifunctional 75.4 3.2 6.9E-05 45.6 4.2 36 4-42 315-350 (715)
247 cd08294 leukotriene_B4_DH_like 75.4 16 0.00034 34.9 8.6 91 4-116 146-237 (329)
248 PLN02740 Alcohol dehydrogenase 75.2 8.3 0.00018 38.4 6.8 29 4-32 201-230 (381)
249 TIGR02441 fa_ox_alpha_mit fatt 75.0 2.8 6.1E-05 46.2 3.7 39 4-45 337-375 (737)
250 KOG0069|consensus 74.9 2.3 4.9E-05 42.6 2.6 23 3-25 163-185 (336)
251 PRK08618 ornithine cyclodeamin 74.6 7.1 0.00015 38.5 6.1 91 3-120 128-219 (325)
252 PRK12475 thiamine/molybdopteri 74.6 2.6 5.6E-05 42.1 3.0 31 3-33 25-55 (338)
253 PRK03803 murD UDP-N-acetylmura 74.5 17 0.00037 37.1 9.1 89 4-120 8-97 (448)
254 PRK09260 3-hydroxybutyryl-CoA 74.3 6.7 0.00015 37.7 5.7 39 4-45 3-41 (288)
255 cd05290 LDH_3 A subgroup of L- 74.1 1.5 3.2E-05 43.2 1.1 28 4-31 1-30 (307)
256 PRK06719 precorrin-2 dehydroge 73.9 35 0.00076 30.1 9.8 30 3-32 14-43 (157)
257 cd08296 CAD_like Cinnamyl alco 73.9 14 0.00029 35.8 7.8 94 4-120 166-259 (333)
258 PRK07201 short chain dehydroge 73.9 32 0.00069 36.7 11.3 31 3-33 1-34 (657)
259 TIGR01087 murD UDP-N-acetylmur 73.9 16 0.00035 37.1 8.6 90 4-121 1-92 (433)
260 PRK07679 pyrroline-5-carboxyla 73.8 4.6 0.0001 38.7 4.4 32 2-33 3-38 (279)
261 PRK15461 NADH-dependent gamma- 73.8 4.4 9.5E-05 39.4 4.3 39 3-44 2-40 (296)
262 PRK14618 NAD(P)H-dependent gly 73.8 4.5 9.7E-05 39.6 4.4 32 2-33 4-35 (328)
263 TIGR02819 fdhA_non_GSH formald 73.7 27 0.00058 35.3 10.2 31 4-34 188-218 (393)
264 PLN02827 Alcohol dehydrogenase 73.7 21 0.00046 35.6 9.4 28 4-31 196-224 (378)
265 PRK07502 cyclohexadienyl dehyd 73.7 4.5 9.8E-05 39.3 4.4 30 3-32 7-38 (307)
266 PRK05086 malate dehydrogenase; 73.7 17 0.00036 35.9 8.4 29 3-31 1-33 (312)
267 PRK14106 murD UDP-N-acetylmura 73.6 15 0.00032 37.4 8.4 93 3-121 6-98 (450)
268 PRK00683 murD UDP-N-acetylmura 73.6 17 0.00037 36.9 8.7 86 3-121 4-89 (418)
269 COG5322 Predicted dehydrogenas 73.2 14 0.00031 36.2 7.4 61 89-152 230-291 (351)
270 KOG0022|consensus 73.0 14 0.0003 37.1 7.4 89 4-113 195-286 (375)
271 PRK05708 2-dehydropantoate 2-r 73.0 5.1 0.00011 39.1 4.6 33 1-33 1-33 (305)
272 PRK06444 prephenate dehydrogen 73.0 4 8.6E-05 37.7 3.6 26 3-28 1-27 (197)
273 PRK00141 murD UDP-N-acetylmura 72.8 20 0.00043 37.2 9.1 83 3-114 16-99 (473)
274 PLN02545 3-hydroxybutyryl-CoA 72.7 4.8 0.0001 38.8 4.3 30 3-32 5-34 (295)
275 PLN02778 3,5-epimerase/4-reduc 72.7 8.8 0.00019 37.1 6.1 30 1-30 8-38 (298)
276 cd08300 alcohol_DH_class_III c 72.5 22 0.00048 35.1 9.1 29 4-32 189-218 (368)
277 PRK15059 tartronate semialdehy 72.5 4.9 0.00011 39.1 4.3 29 4-32 2-30 (292)
278 PLN02494 adenosylhomocysteinas 72.3 4.7 0.0001 42.2 4.3 30 3-32 255-284 (477)
279 PRK10083 putative oxidoreducta 72.2 19 0.00042 34.6 8.4 95 4-119 163-258 (339)
280 PF04321 RmlD_sub_bind: RmlD s 72.2 4.1 8.9E-05 39.3 3.7 31 3-33 1-32 (286)
281 cd08269 Zn_ADH9 Alcohol dehydr 72.2 36 0.00077 32.0 10.1 30 4-33 132-162 (312)
282 PRK06928 pyrroline-5-carboxyla 72.1 5.5 0.00012 38.3 4.6 31 3-33 2-36 (277)
283 cd08255 2-desacetyl-2-hydroxye 72.1 30 0.00065 32.1 9.5 30 4-33 100-130 (277)
284 PRK06988 putative formyltransf 72.1 5.5 0.00012 39.3 4.6 32 1-32 1-32 (312)
285 cd08277 liver_alcohol_DH_like 71.8 22 0.00047 35.1 8.8 29 4-32 187-216 (365)
286 PRK10309 galactitol-1-phosphat 71.6 14 0.00031 35.9 7.4 28 4-31 163-191 (347)
287 PRK14194 bifunctional 5,10-met 71.5 17 0.00038 35.8 7.9 31 3-33 160-191 (301)
288 TIGR02818 adh_III_F_hyde S-(hy 71.2 10 0.00022 37.5 6.4 39 4-45 188-227 (368)
289 PRK11154 fadJ multifunctional 70.9 37 0.0008 37.3 11.1 152 4-173 311-488 (708)
290 cd00757 ThiF_MoeB_HesA_family 70.9 2.4 5.2E-05 39.6 1.7 31 3-33 22-52 (228)
291 PRK05690 molybdopterin biosynt 70.9 3 6.4E-05 39.6 2.3 24 3-26 33-56 (245)
292 PRK05479 ketol-acid reductoiso 70.7 5.1 0.00011 40.1 4.0 31 3-33 18-48 (330)
293 PRK06249 2-dehydropantoate 2-r 70.7 6 0.00013 38.6 4.5 32 2-33 5-36 (313)
294 PRK06129 3-hydroxyacyl-CoA deh 70.5 5.7 0.00012 38.7 4.3 31 3-33 3-33 (308)
295 PRK06035 3-hydroxyacyl-CoA deh 70.5 5.9 0.00013 38.2 4.3 35 4-41 5-39 (291)
296 TIGR00465 ilvC ketol-acid redu 70.4 8 0.00017 38.2 5.3 31 3-33 4-34 (314)
297 cd08262 Zn_ADH8 Alcohol dehydr 70.1 40 0.00086 32.4 10.1 40 4-45 164-203 (341)
298 TIGR00936 ahcY adenosylhomocys 69.9 5.6 0.00012 40.9 4.2 29 4-32 197-225 (406)
299 COG0702 Predicted nucleoside-d 69.9 5.7 0.00012 36.7 4.0 31 3-33 1-32 (275)
300 cd08235 iditol_2_DH_like L-idi 69.8 42 0.00091 32.2 10.2 94 4-117 168-262 (343)
301 cd08284 FDH_like_2 Glutathione 69.8 7.3 0.00016 37.6 4.9 40 4-46 170-210 (344)
302 PRK01710 murD UDP-N-acetylmura 69.8 30 0.00066 35.6 9.7 88 3-120 15-106 (458)
303 cd08245 CAD Cinnamyl alcohol d 69.2 27 0.00058 33.4 8.7 30 4-33 165-194 (330)
304 COG0743 Dxr 1-deoxy-D-xylulose 69.2 8.9 0.00019 38.9 5.3 42 3-45 2-46 (385)
305 cd08231 MDR_TM0436_like Hypoth 69.0 36 0.00078 33.2 9.6 30 4-33 180-210 (361)
306 TIGR00561 pntA NAD(P) transhyd 69.0 20 0.00044 38.0 8.2 38 3-43 165-202 (511)
307 PRK02472 murD UDP-N-acetylmura 68.9 19 0.00042 36.5 8.0 89 4-120 7-97 (447)
308 cd08233 butanediol_DH_like (2R 68.7 25 0.00054 34.2 8.4 29 4-32 175-204 (351)
309 PRK14573 bifunctional D-alanyl 68.5 23 0.0005 39.4 9.0 82 4-114 6-88 (809)
310 TIGR02355 moeB molybdopterin s 68.5 2.9 6.3E-05 39.6 1.7 24 3-26 25-48 (240)
311 PRK02006 murD UDP-N-acetylmura 68.3 26 0.00057 36.4 8.9 30 4-34 9-38 (498)
312 cd01338 MDH_choloroplast_like 68.2 15 0.00033 36.3 6.8 23 2-24 2-25 (322)
313 KOG0024|consensus 68.2 11 0.00024 37.8 5.6 27 88-114 241-267 (354)
314 cd08254 hydroxyacyl_CoA_DH 6-h 68.2 45 0.00098 31.7 9.9 95 4-119 168-262 (338)
315 PLN03154 putative allyl alcoho 68.0 33 0.00071 33.8 9.1 29 4-32 161-190 (348)
316 TIGR02440 FadJ fatty oxidation 68.0 21 0.00044 39.3 8.3 151 4-172 306-482 (699)
317 cd08263 Zn_ADH10 Alcohol dehyd 67.7 47 0.001 32.6 10.2 30 4-33 190-220 (367)
318 PRK03806 murD UDP-N-acetylmura 67.4 37 0.0008 34.5 9.7 87 4-121 8-95 (438)
319 cd08278 benzyl_alcohol_DH Benz 67.2 15 0.00033 36.2 6.7 93 4-117 189-282 (365)
320 PRK05678 succinyl-CoA syntheta 67.2 16 0.00035 35.8 6.7 88 3-122 9-99 (291)
321 PRK06130 3-hydroxybutyryl-CoA 67.1 7.7 0.00017 37.6 4.4 39 3-44 5-43 (311)
322 COG0373 HemA Glutamyl-tRNA red 67.1 20 0.00043 37.0 7.4 32 3-34 179-211 (414)
323 cd08287 FDH_like_ADH3 formalde 66.7 41 0.00089 32.4 9.4 97 4-120 171-268 (345)
324 TIGR01019 sucCoAalpha succinyl 66.6 21 0.00046 34.9 7.3 88 3-122 7-97 (286)
325 cd08260 Zn_ADH6 Alcohol dehydr 66.5 36 0.00079 32.8 9.0 30 4-33 168-197 (345)
326 PF01262 AlaDh_PNT_C: Alanine 66.5 9.4 0.0002 33.8 4.5 32 2-33 20-51 (168)
327 cd01484 E1-2_like Ubiquitin ac 66.4 4.8 0.0001 38.1 2.7 115 4-123 1-124 (234)
328 cd05188 MDR Medium chain reduc 66.4 49 0.0011 30.0 9.5 30 4-33 137-166 (271)
329 cd08295 double_bond_reductase_ 66.4 37 0.0008 32.9 9.0 30 4-33 154-184 (338)
330 PRK07680 late competence prote 66.2 14 0.0003 35.3 5.9 23 3-25 1-23 (273)
331 cd05280 MDR_yhdh_yhfp Yhdh and 66.2 34 0.00073 32.4 8.6 88 4-114 149-237 (325)
332 PRK12921 2-dehydropantoate 2-r 66.1 8.4 0.00018 36.9 4.4 30 3-32 1-30 (305)
333 TIGR02825 B4_12hDH leukotriene 66.1 34 0.00073 32.9 8.6 95 4-119 141-236 (325)
334 cd00650 LDH_MDH_like NAD-depen 65.5 20 0.00042 34.1 6.8 27 5-31 1-32 (263)
335 PRK06545 prephenate dehydrogen 64.9 8.2 0.00018 38.6 4.2 26 4-29 2-27 (359)
336 PTZ00431 pyrroline carboxylate 64.7 6.5 0.00014 37.4 3.3 23 3-25 4-26 (260)
337 PLN00141 Tic62-NAD(P)-related 64.6 9.4 0.0002 35.5 4.3 31 3-33 18-49 (251)
338 PRK15057 UDP-glucose 6-dehydro 64.6 14 0.0003 37.6 5.8 40 3-46 1-40 (388)
339 PLN02427 UDP-apiose/xylose syn 64.5 8.9 0.00019 38.2 4.4 32 2-33 14-47 (386)
340 PRK05600 thiamine biosynthesis 64.5 3 6.5E-05 42.2 1.0 108 3-114 42-157 (370)
341 PRK15116 sulfur acceptor prote 64.4 7.1 0.00015 37.8 3.5 23 3-25 31-53 (268)
342 cd08236 sugar_DH NAD(P)-depend 64.1 51 0.0011 31.7 9.5 91 4-115 162-253 (343)
343 cd01490 Ube1_repeat2 Ubiquitin 64.0 6.5 0.00014 40.8 3.4 121 4-133 1-145 (435)
344 PRK08655 prephenate dehydrogen 63.4 9.2 0.0002 39.5 4.4 30 3-32 1-31 (437)
345 cd08285 NADP_ADH NADP(H)-depen 63.4 50 0.0011 32.0 9.4 28 4-31 169-197 (351)
346 TIGR02371 ala_DH_arch alanine 63.1 19 0.00041 35.6 6.4 37 3-41 129-166 (325)
347 PLN02702 L-idonate 5-dehydroge 62.9 24 0.00052 34.6 7.1 100 4-119 184-284 (364)
348 TIGR01757 Malate-DH_plant mala 62.9 13 0.00028 38.1 5.2 23 2-24 44-67 (387)
349 cd05288 PGDH Prostaglandin deh 62.9 41 0.00088 32.0 8.5 30 4-33 148-178 (329)
350 PRK11908 NAD-dependent epimera 62.7 10 0.00022 37.0 4.4 31 3-33 2-34 (347)
351 PLN02206 UDP-glucuronate decar 62.7 9.1 0.0002 39.5 4.2 31 3-33 120-151 (442)
352 TIGR01470 cysG_Nterm siroheme 62.4 48 0.001 30.6 8.5 30 3-32 10-39 (205)
353 PRK00258 aroE shikimate 5-dehy 62.4 41 0.0009 32.3 8.4 31 3-33 124-155 (278)
354 PRK14188 bifunctional 5,10-met 62.3 31 0.00067 34.0 7.6 30 3-32 159-189 (296)
355 cd08246 crotonyl_coA_red croto 62.3 93 0.002 30.8 11.2 39 4-45 196-235 (393)
356 TIGR01381 E1_like_apg7 E1-like 62.2 3.3 7.1E-05 44.9 0.8 24 3-26 339-362 (664)
357 cd08292 ETR_like_2 2-enoyl thi 62.1 81 0.0018 29.8 10.4 31 4-34 142-173 (324)
358 PRK07066 3-hydroxybutyryl-CoA 62.1 11 0.00023 37.6 4.3 36 4-42 9-44 (321)
359 cd05212 NAD_bind_m-THF_DH_Cycl 61.7 44 0.00095 29.2 7.7 30 89-122 71-100 (140)
360 cd05279 Zn_ADH1 Liver alcohol 61.6 38 0.00081 33.4 8.2 28 4-31 186-214 (365)
361 PRK10675 UDP-galactose-4-epime 61.5 11 0.00024 36.3 4.4 31 3-33 1-32 (338)
362 PRK14192 bifunctional 5,10-met 61.4 33 0.00072 33.4 7.6 25 4-28 161-186 (283)
363 PLN02695 GDP-D-mannose-3',5'-e 61.2 11 0.00024 37.5 4.4 32 2-33 21-53 (370)
364 PRK07688 thiamine/molybdopteri 61.1 5 0.00011 40.1 1.8 31 3-33 25-56 (339)
365 PRK09496 trkA potassium transp 60.8 18 0.00039 36.7 5.9 36 3-41 232-267 (453)
366 COG1023 Gnd Predicted 6-phosph 60.7 16 0.00035 35.3 5.1 43 3-48 1-43 (300)
367 cd05191 NAD_bind_amino_acid_DH 60.5 17 0.00037 28.4 4.5 23 3-25 24-46 (86)
368 cd08234 threonine_DH_like L-th 60.4 36 0.00077 32.5 7.6 90 4-115 162-252 (334)
369 PRK08293 3-hydroxybutyryl-CoA 60.4 12 0.00026 36.0 4.4 30 3-32 4-33 (287)
370 cd08270 MDR4 Medium chain dehy 60.0 72 0.0016 29.8 9.5 86 4-119 135-221 (305)
371 PRK05442 malate dehydrogenase; 60.0 19 0.00042 35.8 5.8 23 2-24 4-27 (326)
372 PF01073 3Beta_HSD: 3-beta hyd 59.5 33 0.00071 33.0 7.2 25 7-31 2-29 (280)
373 PTZ00142 6-phosphogluconate de 59.4 11 0.00023 39.5 4.0 40 3-45 2-41 (470)
374 PRK08219 short chain dehydroge 59.4 14 0.0003 33.0 4.4 31 2-33 3-34 (227)
375 cd01339 LDH-like_MDH L-lactate 59.3 18 0.00038 35.1 5.3 29 5-34 1-30 (300)
376 PRK14175 bifunctional 5,10-met 59.3 50 0.0011 32.4 8.4 27 3-29 159-186 (286)
377 PRK07877 hypothetical protein; 59.2 4.5 9.6E-05 44.6 1.2 117 3-123 108-229 (722)
378 TIGR00518 alaDH alanine dehydr 58.8 13 0.00027 37.6 4.3 31 3-33 168-198 (370)
379 PRK04308 murD UDP-N-acetylmura 58.8 60 0.0013 33.1 9.4 91 3-120 6-96 (445)
380 cd08289 MDR_yhfp_like Yhfp put 58.7 41 0.00089 31.9 7.7 93 4-119 149-242 (326)
381 PRK05597 molybdopterin biosynt 58.7 5.7 0.00012 39.9 1.8 24 3-26 29-52 (355)
382 cd08240 6_hydroxyhexanoate_dh_ 58.6 29 0.00064 33.6 6.8 90 4-114 178-268 (350)
383 PRK04663 murD UDP-N-acetylmura 58.5 61 0.0013 33.1 9.3 83 3-114 8-93 (438)
384 KOG0455|consensus 58.4 9.9 0.00021 36.9 3.2 33 2-34 3-44 (364)
385 cd08259 Zn_ADH5 Alcohol dehydr 58.2 42 0.00091 31.8 7.6 30 4-33 165-195 (332)
386 PRK09291 short chain dehydroge 58.1 16 0.00034 33.5 4.6 33 1-33 1-34 (257)
387 PRK08223 hypothetical protein; 58.0 9.9 0.00022 37.3 3.3 24 3-26 28-51 (287)
388 cd08258 Zn_ADH4 Alcohol dehydr 57.9 48 0.001 31.7 8.0 138 4-164 167-305 (306)
389 TIGR01214 rmlD dTDP-4-dehydror 57.8 13 0.00027 35.0 3.9 30 4-33 1-31 (287)
390 PF00070 Pyr_redox: Pyridine n 57.7 19 0.00041 27.5 4.2 29 4-32 1-29 (80)
391 cd08232 idonate-5-DH L-idonate 57.0 92 0.002 29.8 9.9 29 4-32 168-197 (339)
392 PRK08017 oxidoreductase; Provi 56.8 17 0.00037 33.3 4.6 33 1-33 1-34 (256)
393 PRK14982 acyl-ACP reductase; P 56.8 19 0.0004 36.2 5.0 31 3-33 156-189 (340)
394 PLN02240 UDP-glucose 4-epimera 56.7 15 0.00033 35.5 4.4 31 3-33 6-37 (352)
395 PRK15181 Vi polysaccharide bio 56.1 15 0.00033 36.1 4.3 31 3-33 16-47 (348)
396 cd08293 PTGR2 Prostaglandin re 55.8 22 0.00049 34.2 5.4 95 4-119 157-253 (345)
397 PRK09987 dTDP-4-dehydrorhamnos 55.6 16 0.00034 35.2 4.2 29 3-32 1-30 (299)
398 PLN02896 cinnamyl-alcohol dehy 55.5 17 0.00036 35.7 4.5 31 3-33 11-42 (353)
399 COG0345 ProC Pyrroline-5-carbo 55.4 29 0.00064 33.6 6.0 40 3-45 2-45 (266)
400 TIGR03466 HpnA hopanoid-associ 55.4 15 0.00032 35.0 4.0 30 4-33 2-32 (328)
401 cd08238 sorbose_phosphate_red 55.0 55 0.0012 33.0 8.3 106 4-121 178-289 (410)
402 TIGR01751 crot-CoA-red crotony 54.8 80 0.0017 31.5 9.4 29 4-32 192-221 (398)
403 PF01370 Epimerase: NAD depend 54.6 19 0.0004 32.4 4.3 30 5-34 1-31 (236)
404 cd08261 Zn_ADH7 Alcohol dehydr 54.5 1.1E+02 0.0025 29.2 10.1 38 4-44 162-199 (337)
405 cd05292 LDH_2 A subgroup of L- 54.2 18 0.00038 35.5 4.4 30 3-32 1-32 (308)
406 PRK02318 mannitol-1-phosphate 54.1 14 0.0003 37.4 3.7 30 3-32 1-31 (381)
407 PRK10754 quinone oxidoreductas 53.8 92 0.002 29.6 9.3 30 4-33 143-173 (327)
408 PRK07326 short chain dehydroge 53.6 20 0.00042 32.5 4.4 31 3-33 7-38 (237)
409 PRK15182 Vi polysaccharide bio 53.4 16 0.00034 37.7 4.0 40 2-45 6-45 (425)
410 PLN02572 UDP-sulfoquinovose sy 52.9 18 0.0004 37.2 4.4 30 3-32 48-78 (442)
411 PRK14179 bifunctional 5,10-met 52.7 56 0.0012 32.0 7.5 46 89-138 201-248 (284)
412 TIGR00507 aroE shikimate 5-deh 52.7 72 0.0016 30.4 8.2 30 4-33 119-148 (270)
413 PRK05396 tdh L-threonine 3-deh 52.5 55 0.0012 31.6 7.5 28 4-31 166-194 (341)
414 KOG2250|consensus 52.5 82 0.0018 33.2 8.9 99 3-114 252-359 (514)
415 cd05281 TDH Threonine dehydrog 51.8 1.2E+02 0.0026 29.2 9.9 28 4-31 166-194 (341)
416 cd05285 sorbitol_DH Sorbitol d 51.7 84 0.0018 30.3 8.7 28 4-31 165-193 (343)
417 cd08264 Zn_ADH_like2 Alcohol d 51.7 27 0.00059 33.3 5.2 29 4-32 165-194 (325)
418 PRK08762 molybdopterin biosynt 51.7 9 0.0002 38.6 1.9 30 3-32 136-166 (376)
419 cd08252 AL_MDR Arginate lyase 51.6 56 0.0012 31.1 7.4 90 4-115 152-243 (336)
420 TIGR00873 gnd 6-phosphoglucona 51.2 15 0.00033 38.3 3.6 39 4-45 1-39 (467)
421 PF02558 ApbA: Ketopantoate re 51.2 22 0.00049 30.2 4.1 29 5-33 1-29 (151)
422 KOG2380|consensus 51.1 17 0.00038 36.8 3.7 27 2-28 52-78 (480)
423 cd08290 ETR 2-enoyl thioester 51.0 41 0.00089 32.3 6.4 31 4-34 149-180 (341)
424 PRK05653 fabG 3-ketoacyl-(acyl 50.9 34 0.00074 30.7 5.5 31 3-33 6-37 (246)
425 KOG1399|consensus 50.5 19 0.00042 37.4 4.2 30 2-31 6-35 (448)
426 PRK02705 murD UDP-N-acetylmura 50.5 1.2E+02 0.0025 31.0 9.9 30 4-34 2-31 (459)
427 TIGR02822 adh_fam_2 zinc-bindi 50.5 2.5E+02 0.0053 27.3 11.8 84 4-117 168-251 (329)
428 PRK07411 hypothetical protein; 50.3 8 0.00017 39.4 1.3 24 3-26 39-62 (390)
429 cd05284 arabinose_DH_like D-ar 50.3 57 0.0012 31.3 7.2 30 4-33 170-200 (340)
430 smart00833 CobW_C Cobalamin sy 50.1 27 0.00058 27.1 4.1 50 241-290 2-55 (92)
431 PRK08328 hypothetical protein; 49.9 13 0.00028 34.9 2.6 25 3-27 28-52 (231)
432 cd01485 E1-1_like Ubiquitin ac 49.7 12 0.00026 34.3 2.3 25 3-27 20-44 (198)
433 PLN00198 anthocyanidin reducta 49.4 22 0.00049 34.4 4.3 30 3-32 10-40 (338)
434 PLN02353 probable UDP-glucose 48.9 24 0.00051 37.0 4.5 39 3-44 2-42 (473)
435 PRK10217 dTDP-glucose 4,6-dehy 48.8 24 0.00052 34.3 4.4 31 3-33 2-33 (355)
436 TIGR01408 Ube1 ubiquitin-activ 48.6 16 0.00034 42.0 3.4 125 3-133 420-565 (1008)
437 PRK06046 alanine dehydrogenase 48.5 39 0.00084 33.4 5.8 37 3-41 130-167 (326)
438 PRK14620 NAD(P)H-dependent gly 48.4 25 0.00054 34.3 4.4 29 3-31 1-29 (326)
439 cd08248 RTN4I1 Human Reticulon 48.1 1.1E+02 0.0024 29.3 8.9 30 4-33 165-195 (350)
440 PF07991 IlvN: Acetohydroxy ac 48.0 22 0.00048 32.1 3.6 31 3-33 5-35 (165)
441 cd00704 MDH Malate dehydrogena 48.0 51 0.0011 32.7 6.5 22 3-24 1-23 (323)
442 PRK12745 3-ketoacyl-(acyl-carr 48.0 27 0.00059 31.9 4.4 33 1-33 1-34 (256)
443 PRK07023 short chain dehydroge 48.0 25 0.00054 32.1 4.1 30 3-32 2-32 (243)
444 PRK10538 malonic semialdehyde 47.9 27 0.00058 32.1 4.3 31 3-33 1-32 (248)
445 TIGR00715 precor6x_red precorr 47.9 18 0.00039 34.8 3.2 29 3-32 1-30 (256)
446 PLN02583 cinnamoyl-CoA reducta 47.8 25 0.00053 33.7 4.2 30 4-33 8-38 (297)
447 cd01489 Uba2_SUMO Ubiquitin ac 47.7 16 0.00035 36.2 3.0 30 4-33 1-30 (312)
448 cd08279 Zn_ADH_class_III Class 47.4 1.1E+02 0.0024 30.0 8.8 30 4-33 185-215 (363)
449 cd08244 MDR_enoyl_red Possible 47.4 1.5E+02 0.0033 27.9 9.6 30 4-33 145-175 (324)
450 PRK13940 glutamyl-tRNA reducta 47.2 39 0.00085 34.8 5.8 32 3-34 182-214 (414)
451 COG1179 Dinucleotide-utilizing 47.2 40 0.00086 32.6 5.3 118 3-129 31-163 (263)
452 PRK12826 3-ketoacyl-(acyl-carr 47.0 27 0.00058 31.7 4.1 31 3-33 7-38 (251)
453 cd08265 Zn_ADH3 Alcohol dehydr 46.8 1.7E+02 0.0036 29.1 10.1 29 4-32 206-235 (384)
454 TIGR01763 MalateDH_bact malate 46.8 28 0.0006 34.2 4.4 30 3-32 2-32 (305)
455 COG0677 WecC UDP-N-acetyl-D-ma 46.6 21 0.00045 36.8 3.6 31 1-31 8-38 (436)
456 TIGR01181 dTDP_gluc_dehyt dTDP 46.3 22 0.00048 33.4 3.6 30 4-33 1-33 (317)
457 cd08249 enoyl_reductase_like e 46.1 53 0.0012 31.8 6.3 94 4-119 157-253 (339)
458 cd08250 Mgc45594_like Mgc45594 45.9 93 0.002 29.6 7.9 30 4-33 142-172 (329)
459 PRK06947 glucose-1-dehydrogena 45.8 30 0.00065 31.5 4.3 31 1-31 1-32 (248)
460 PLN02350 phosphogluconate dehy 45.7 20 0.00044 37.7 3.5 128 3-140 7-157 (493)
461 PRK12827 short chain dehydroge 45.5 32 0.0007 31.1 4.5 31 3-33 7-38 (249)
462 PF02192 PI3K_p85B: PI3-kinase 45.5 40 0.00086 26.7 4.3 36 243-278 2-38 (78)
463 cd08286 FDH_like_ADH2 formalde 45.4 1.6E+02 0.0035 28.3 9.6 29 4-32 169-198 (345)
464 cd08299 alcohol_DH_class_I_II_ 45.1 1.2E+02 0.0026 30.1 8.8 30 4-33 193-223 (373)
465 PF07683 CobW_C: Cobalamin syn 45.1 32 0.00069 26.9 3.8 50 241-290 2-54 (94)
466 PRK12320 hypothetical protein; 45.0 27 0.00059 38.5 4.4 31 3-33 1-32 (699)
467 cd08243 quinone_oxidoreductase 44.9 67 0.0014 30.0 6.7 87 4-114 145-232 (320)
468 cd05286 QOR2 Quinone oxidoredu 44.7 1.5E+02 0.0032 27.4 8.9 30 4-33 139-169 (320)
469 PRK01368 murD UDP-N-acetylmura 44.5 1E+02 0.0022 31.9 8.4 29 3-33 7-35 (454)
470 TIGR01179 galE UDP-glucose-4-e 44.2 28 0.00061 32.8 4.0 30 4-33 1-31 (328)
471 TIGR02823 oxido_YhdH putative 44.2 82 0.0018 29.8 7.2 30 4-33 148-178 (323)
472 PLN02986 cinnamyl-alcohol dehy 43.8 52 0.0011 31.5 5.8 31 3-33 6-37 (322)
473 TIGR03570 NeuD_NnaD sugar O-ac 43.5 35 0.00075 30.0 4.2 31 4-34 1-31 (201)
474 TIGR01472 gmd GDP-mannose 4,6- 43.4 29 0.00063 33.7 4.0 30 4-33 2-32 (343)
475 TIGR01082 murC UDP-N-acetylmur 43.3 1.2E+02 0.0025 31.2 8.5 30 4-34 1-31 (448)
476 PRK15076 alpha-galactosidase; 43.3 28 0.0006 36.0 4.0 13 3-15 2-14 (431)
477 cd08256 Zn_ADH2 Alcohol dehydr 43.2 2E+02 0.0043 27.8 9.9 30 4-33 177-206 (350)
478 PRK06153 hypothetical protein; 43.1 14 0.0003 37.9 1.7 29 3-31 177-206 (393)
479 PTZ00354 alcohol dehydrogenase 43.0 1.3E+02 0.0029 28.3 8.5 39 4-45 143-182 (334)
480 PF00289 CPSase_L_chain: Carba 43.0 28 0.00061 29.0 3.3 34 1-34 1-34 (110)
481 PRK06019 phosphoribosylaminoim 42.8 35 0.00076 34.1 4.6 31 3-33 3-33 (372)
482 PF00743 FMO-like: Flavin-bind 42.4 36 0.00079 36.1 4.8 30 3-32 2-31 (531)
483 PRK07878 molybdopterin biosynt 42.2 14 0.00031 37.5 1.7 24 3-26 43-66 (392)
484 PRK08125 bifunctional UDP-gluc 41.9 32 0.00069 37.2 4.4 31 3-33 316-348 (660)
485 PRK07231 fabG 3-ketoacyl-(acyl 41.3 36 0.00078 30.9 4.1 31 3-33 6-37 (251)
486 PRK06924 short chain dehydroge 41.2 39 0.00084 30.8 4.3 30 4-33 3-33 (251)
487 cd05278 FDH_like Formaldehyde 41.2 1.3E+02 0.0029 28.7 8.2 28 4-31 170-198 (347)
488 PRK08163 salicylate hydroxylas 41.1 38 0.00083 33.5 4.5 31 2-32 4-34 (396)
489 PRK07024 short chain dehydroge 41.1 42 0.00092 31.0 4.6 32 1-32 1-33 (257)
490 PLN00112 malate dehydrogenase 41.1 14 0.00029 38.6 1.3 23 2-24 100-123 (444)
491 PRK05586 biotin carboxylase; V 41.1 37 0.00079 34.9 4.5 32 1-32 1-32 (447)
492 PRK05565 fabG 3-ketoacyl-(acyl 40.9 41 0.00089 30.3 4.4 29 3-31 6-35 (247)
493 PRK11150 rfaD ADP-L-glycero-D- 40.6 37 0.0008 32.3 4.2 29 5-33 2-31 (308)
494 PRK12825 fabG 3-ketoacyl-(acyl 40.6 41 0.00089 30.2 4.3 31 3-33 7-38 (249)
495 PRK05335 tRNA (uracil-5-)-meth 40.6 38 0.00083 35.2 4.5 32 1-32 1-32 (436)
496 PRK03815 murD UDP-N-acetylmura 40.5 35 0.00075 34.8 4.2 28 3-31 1-28 (401)
497 PRK12409 D-amino acid dehydrog 40.4 39 0.00086 33.7 4.5 31 2-32 1-31 (410)
498 PRK07236 hypothetical protein; 40.0 42 0.00091 33.3 4.6 31 2-32 6-36 (386)
499 PRK04148 hypothetical protein; 39.8 32 0.00069 30.0 3.2 96 3-126 18-114 (134)
500 PRK14851 hypothetical protein; 39.6 17 0.00036 39.9 1.8 22 3-24 44-65 (679)
No 1
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-121 Score=896.57 Aligned_cols=336 Identities=54% Similarity=0.893 Sum_probs=323.1
Q ss_pred CCceEEEEccChHHHHHHHHHhcC-----CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceee--------cCCeEEE
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHR-----NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKT--------EGNNIVV 67 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~-----~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~--------~~~~l~i 67 (364)
|++||||||||||||+++|++.++ +++||||||+.+++++++|||||||+||+|+++++. +++.|.+
T Consensus 2 m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~i 81 (361)
T PTZ00434 2 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVV 81 (361)
T ss_pred CceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEE
Confidence 568999999999999999998763 799999999768999999999999999999999998 7899999
Q ss_pred CCEEEEEE-ecCCCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCCC-CCeEEcccCccccCC-CCCe
Q psy8544 68 NGKKIAVF-QKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSKD-APMFVCGVNLDKYDP-SHSV 144 (364)
Q Consensus 68 ~gk~I~v~-~~~~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~d-~p~vV~gVN~~~~~~-~~~I 144 (364)
||++|.++ ++++|+++||+++|+|||+||||.|++++.++.|+++||||||||+|++| .|+||+||||+.|++ .++|
T Consensus 82 ng~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~~~I 161 (361)
T PTZ00434 82 NGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEHHV 161 (361)
T ss_pred CCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCcccCcE
Confidence 99999986 99999999999999999999999999999999999999999999999987 689999999999997 5789
Q ss_pred EecCCchhhhHHhHHHHH-hhhcCeeEEEEEeeeccccchhhhcCCCcccccccccccceeecCCCChHHHHHHHccCCC
Q psy8544 145 VSNASCTTNCLAPLAKVI-HDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLE 223 (364)
Q Consensus 145 ISnaSCTTn~Lap~lk~L-~d~fGI~~~~~TTvha~t~~q~~~D~~~~~d~r~~r~~a~NIIP~~tGaak~~~kVlPeL~ 223 (364)
|||+|||||||||++|+| ||+|||++++|||+|+||++|+++|+|+++||||+|++++||||++||++|++++|||+|+
T Consensus 162 iSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~~~D~~~~kD~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~ 241 (361)
T PTZ00434 162 VSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTK 241 (361)
T ss_pred EECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcccccCcCcccccccccccccCccCCcchhhhhceeccccC
Confidence 999999999999999999 7999999999999999999999999997799999999999999999999999999999999
Q ss_pred CceeeEEEeceeccceEEEEEEEeccCCCHHHHHHHHHHccCCCCCccccccCCceEeecCCCCCceeEEecCCcceec-
Q psy8544 224 GKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIALN- 302 (364)
Q Consensus 224 gki~~~avRVPv~~gs~~dl~~~l~k~~s~eei~~~l~~a~~~~lkgil~~~e~~~VS~df~~~~~s~i~d~~~~~~~~- 302 (364)
||++|+++||||++||++||+++++|++++||||++|++|++++|||||+|+|+|+||+||+|++||+|||+.+|++++
T Consensus 242 GKl~G~a~RVPt~nvS~vDLt~~l~k~~t~eein~a~k~aa~~~lkgIl~y~~~plVS~Df~g~~~Ssi~D~~~t~v~~~ 321 (361)
T PTZ00434 242 GKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIKRASQTYMKGILGFTDDELVSADFINDNRSSIYDSKATLQNNL 321 (361)
T ss_pred CceeeEEEecccCcEeEEEEEEEeCCCCCHHHHHHHHHHhhhccccCcccccCCCccccccCCCCCCeEEEhhhCeEecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ---CceEEEEEEecCCCcchhhhhHHHHHHhccCCCC
Q psy8544 303 ---KNFVKLVTWYDNEYGYSCRVLDLIQYMKSKDTGS 336 (364)
Q Consensus 303 ---~~~~kl~~WyDNE~gys~r~~dl~~~~~~~~~~~ 336 (364)
++|+|+++||||||||||||+||+.||.+....+
T Consensus 322 ~~~~~~vKv~~WYDNEwGys~Rl~dl~~~~~~~~~~~ 358 (361)
T PTZ00434 322 PGERRFFKIVSWYDNEWGYSHRVVDLVRYMAAKDAAS 358 (361)
T ss_pred CCCCCEEEEEEEecCchHHHHHHHHHHHHHHhccccc
Confidence 4899999999999999999999999998776543
No 2
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=4.4e-116 Score=857.04 Aligned_cols=329 Identities=68% Similarity=1.084 Sum_probs=320.5
Q ss_pred CCceEEEEccChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCC
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMK 79 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~ 79 (364)
|++||||||||||||+++|+++++ +++||||||+ .++++++|||||||+||+|+++++.+++.|.|+|++|.++++++
T Consensus 1 m~~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~-~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~d 79 (331)
T PRK15425 1 MTIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-LDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERD 79 (331)
T ss_pred CceEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC-CCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCC
Confidence 778999999999999999998877 8999999996 79999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCCC-CCeEEcccCccccCCCCCeEecCCchhhhHHhH
Q psy8544 80 PEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSKD-APMFVCGVNLDKYDPSHSVVSNASCTTNCLAPL 158 (364)
Q Consensus 80 p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~d-~p~vV~gVN~~~~~~~~~IISnaSCTTn~Lap~ 158 (364)
|++++|+++|+|+||||||.|+++++|+.|+++|||+|++|+|++| +|+||||||++.|++ ++||||||||||||+|+
T Consensus 80 p~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~~-~~IISnaSCtTn~Lapv 158 (331)
T PRK15425 80 PANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAG-QDIVSNASCTTNCLAPL 158 (331)
T ss_pred hhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcCC-CCEEECCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999875 799999999999975 78999999999999999
Q ss_pred HHHHhhhcCeeEEEEEeeeccccchhhhcCCCcccccccccccceeecCCCChHHHHHHHccCCCCceeeEEEeceeccc
Q psy8544 159 AKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPNV 238 (364)
Q Consensus 159 lk~L~d~fGI~~~~~TTvha~t~~q~~~D~~~~~d~r~~r~~a~NIIP~~tGaak~~~kVlPeL~gki~~~avRVPv~~g 238 (364)
+|+||++|||++++||||||+|++|+++|++++++|||+|++++||||++||++++++||||+|+||++++|+||||++|
T Consensus 159 lk~L~~~fgI~~g~mTTvha~T~~q~llD~~~~~d~r~~R~aa~NiIPt~tGaa~av~kIlP~L~gkl~g~avRVPv~~g 238 (331)
T PRK15425 159 AKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 238 (331)
T ss_pred HHHHHHhCCeEEEEEEEEEeccCccccccCCCCcccccCcchhhceecccCCchHHHHhhccccCCeEEEEEEEecccCe
Confidence 99999999999999999999999999999987789999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEeccCCCHHHHHHHHHHccCCCCCccccccCCceEeecCCCCCceeEEecCCcceecCceEEEEEEecCCCcc
Q psy8544 239 SVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIALNKNFVKLVTWYDNEYGY 318 (364)
Q Consensus 239 s~~dl~~~l~k~~s~eei~~~l~~a~~~~lkgil~~~e~~~VS~df~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy 318 (364)
|++||++++++++++||++++|+++++++|||||+|+|+|+||+||+|++||||||+.+|++++++++|+++||||||||
T Consensus 239 s~~dltv~l~~~~t~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~ssi~d~~~t~v~~~~~~k~~~WyDNE~gy 318 (331)
T PRK15425 239 SVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGY 318 (331)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHhhccccccccccCCcEeeeecCCCCcceEEEcccCEEecCCEEEEEEEecCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHhc
Q psy8544 319 SCRVLDLIQYMKS 331 (364)
Q Consensus 319 s~r~~dl~~~~~~ 331 (364)
||||+||+.||.+
T Consensus 319 s~r~~d~~~~~~~ 331 (331)
T PRK15425 319 SNKVLDLIAHISK 331 (331)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999853
No 3
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=7.3e-116 Score=857.33 Aligned_cols=332 Identities=64% Similarity=1.034 Sum_probs=323.0
Q ss_pred CCceEEEEccChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCC
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMK 79 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~ 79 (364)
|++||||||||||||+++|+++++ +++||||||+..++++++|||||||+||+|+++++.+++.|.+||++|+++++++
T Consensus 1 m~~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~d 80 (337)
T PTZ00023 1 MVVKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKD 80 (337)
T ss_pred CceEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCC
Confidence 788999999999999999998877 8999999997789999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCCC-CCeEEcccCccccCCCCCeEecCCchhhhHHhH
Q psy8544 80 PEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSKD-APMFVCGVNLDKYDPSHSVVSNASCTTNCLAPL 158 (364)
Q Consensus 80 p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~d-~p~vV~gVN~~~~~~~~~IISnaSCTTn~Lap~ 158 (364)
|+++||++.|+|+||||||.|+++++++.|+++|||+|++|+|+++ +|+||||||++.|++.++||||||||||||+|+
T Consensus 81 p~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~~IISnasCTTn~Lap~ 160 (337)
T PTZ00023 81 PAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCLAPL 160 (337)
T ss_pred hhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999875 799999999999987778999999999999999
Q ss_pred HHHHhhhcCeeEEEEEeeeccccchhhhcCCC--cccccccccccceeecCCCChHHHHHHHccCCCCceeeEEEeceec
Q psy8544 159 AKVIHDNFEILEGLMTTVHAVTATQKTVDAPS--KKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVP 236 (364)
Q Consensus 159 lk~L~d~fGI~~~~~TTvha~t~~q~~~D~~~--~~d~r~~r~~a~NIIP~~tGaak~~~kVlPeL~gki~~~avRVPv~ 236 (364)
+|+||++|||+++.||||||+|.+|.++|+++ ++||||+|++++||||++||+++++++|+|+|+||++++|+||||+
T Consensus 161 lk~L~~~fgI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~~a~NiIP~~tGaakav~kVlPeL~gkl~g~avRVPt~ 240 (337)
T PTZ00023 161 AKVVNDKFGIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPVP 240 (337)
T ss_pred HHHHHHhcCeeEEEEEEEEecCCCceecCCcCcccCCCcccceeeccccccCCCcchhhhheecccCCcEEEEEEEeccc
Confidence 99999999999999999999999999999986 4899999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEEeccCCCHHHHHHHHHHccCCCCCccccccCCceEeecCCCCCceeEEecCCcceecCceEEEEEEecCCC
Q psy8544 237 NVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIALNKNFVKLVTWYDNEY 316 (364)
Q Consensus 237 ~gs~~dl~~~l~k~~s~eei~~~l~~a~~~~lkgil~~~e~~~VS~df~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~ 316 (364)
+||++||++++++++++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++|+|+++||||||
T Consensus 241 ~~s~~dltv~l~k~vt~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~v~~~~~~k~~~WyDNE~ 320 (337)
T PTZ00023 241 DVSVVDLTCKLAKPAKYEEIVAAVKKAAEGPLKGILGYTDDEVVSSDFVHDKRSSIFDVKAGIALNDTFVKLVSWYDNEW 320 (337)
T ss_pred CeEEEEEEEEECCCCCHHHHHHHHHHHhcccccCCcCccCCCeeeeecCCCCCCeEEEcccCeEecCCEEEEEEEecCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhHHHHHHhcc
Q psy8544 317 GYSCRVLDLIQYMKSK 332 (364)
Q Consensus 317 gys~r~~dl~~~~~~~ 332 (364)
||||||+||+.||.++
T Consensus 321 gys~r~~d~~~~~~~~ 336 (337)
T PTZ00023 321 GYSNRLLDLAHYITQK 336 (337)
T ss_pred hHHHHHHHHHHHHhhc
Confidence 9999999999999764
No 4
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=1.1e-115 Score=873.92 Aligned_cols=331 Identities=48% Similarity=0.761 Sum_probs=320.1
Q ss_pred CCceEEEEccChHHHHHHHHHhcC---CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceee-cCCeEEECCEEEEEEe
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHR---NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKT-EGNNIVVNGKKIAVFQ 76 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~---~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~-~~~~l~i~gk~I~v~~ 76 (364)
|++||||||||||||+++|++.++ ++|||+|||+ .++++++|||||||+||+|+++++. +++.|.++|+.|++++
T Consensus 74 ~~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~-~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~ 152 (442)
T PLN02237 74 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVS 152 (442)
T ss_pred ceEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC-CCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEE
Confidence 678999999999999999997744 7999999996 6999999999999999999999987 7889999999999999
Q ss_pred cCCCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCCC--CCeEEcccCccccCCC-CCeEecCCchhh
Q psy8544 77 KMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSKD--APMFVCGVNLDKYDPS-HSVVSNASCTTN 153 (364)
Q Consensus 77 ~~~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~d--~p~vV~gVN~~~~~~~-~~IISnaSCTTn 153 (364)
+++|.+++|++.|+||||||||.|+++++++.|+++|||+|++|+|.+| +||||||||++.|++. ++||||||||||
T Consensus 153 ~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCTTN 232 (442)
T PLN02237 153 NRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTTN 232 (442)
T ss_pred cCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchHHH
Confidence 9999999999999999999999999999999999999999999999875 7999999999999875 789999999999
Q ss_pred hHHhHHHHHhhhcCeeEEEEEeeeccccchhhhcCCCcccccccccccceeecCCCChHHHHHHHccCCCCceeeEEEec
Q psy8544 154 CLAPLAKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRV 233 (364)
Q Consensus 154 ~Lap~lk~L~d~fGI~~~~~TTvha~t~~q~~~D~~~~~d~r~~r~~a~NIIP~~tGaak~~~kVlPeL~gki~~~avRV 233 (364)
||+|++|+|||+|||++++|||||+||++|+++|+++ +||||+|++++||||++||++|++++|||+|+||++|+++||
T Consensus 233 cLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~~h-~D~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl~g~A~RV 311 (442)
T PLN02237 233 CLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRV 311 (442)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEEeccCCcccccCCC-cccccccccccccccCCcchhhhhceecccCCCceeeEEEec
Confidence 9999999999999999999999999999999999996 899999999999999999999999999999999999999999
Q ss_pred eeccceEEEEEEEecc-CCCHHHHHHHHHHccCCCCCccccccCCceEeecCCCCCceeEEecCCcceecCceEEEEEEe
Q psy8544 234 PVPNVSVVDLTVRLCC-DVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIALNKNFVKLVTWY 312 (364)
Q Consensus 234 Pv~~gs~~dl~~~l~k-~~s~eei~~~l~~a~~~~lkgil~~~e~~~VS~df~~~~~s~i~d~~~~~~~~~~~~kl~~Wy 312 (364)
||++||++||+++++| ++++||||++|++|++++|||||+|+|+|+||+||+|++||+|||+.+|++++++|+||++||
T Consensus 312 Pt~nvS~vDLt~~l~k~~~t~eein~~~k~aa~~~lkgil~y~~~plVS~Df~~~~~Ssi~D~~~t~v~~~~~vKv~aWY 391 (442)
T PLN02237 312 PTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADGPLKGILAVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVVAWY 391 (442)
T ss_pred ccCCceEEEEEEEeCCCCCCHHHHHHHHHHhhccccCCeeeeeCCceeeeeecCCCcceEEEcccCEEeCCCEEEEEEEe
Confidence 9999999999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcchhhhhHHHHHHhccC
Q psy8544 313 DNEYGYSCRVLDLIQYMKSKD 333 (364)
Q Consensus 313 DNE~gys~r~~dl~~~~~~~~ 333 (364)
||||||||||+||+.||.++.
T Consensus 392 DNEwGys~R~~dl~~~~~~~~ 412 (442)
T PLN02237 392 DNEWGYSQRVVDLAHLVAAKW 412 (442)
T ss_pred CCchhHHHHHHHHHHHHHHhh
Confidence 999999999999999998864
No 5
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.9e-114 Score=846.74 Aligned_cols=328 Identities=50% Similarity=0.813 Sum_probs=318.2
Q ss_pred ceEEEEccChHHHHHHHHHhcC---CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHR---NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMK 79 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~---~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~ 79 (364)
+||||||||||||+++|++.++ +++||||||+ .++++++|||||||+||+|+++++.+++.|.+||++|.++++++
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~-~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~d 80 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT-SDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDRN 80 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC-CCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcCC
Confidence 7999999999999999998754 7999999997 69999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCCC--CCeEEcccCccccCC-CCCeEecCCchhhhHH
Q psy8544 80 PEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSKD--APMFVCGVNLDKYDP-SHSVVSNASCTTNCLA 156 (364)
Q Consensus 80 p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~d--~p~vV~gVN~~~~~~-~~~IISnaSCTTn~La 156 (364)
|++++|+++|+|+||||||.|+++++++.|+++|||+|++|+|++| +||||||||++.|++ .++||||||||||||+
T Consensus 81 p~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn~La 160 (337)
T PRK07403 81 PLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNCLA 160 (337)
T ss_pred cccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999764 699999999999985 4789999999999999
Q ss_pred hHHHHHhhhcCeeEEEEEeeeccccchhhhcCCCcccccccccccceeecCCCChHHHHHHHccCCCCceeeEEEeceec
Q psy8544 157 PLAKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVP 236 (364)
Q Consensus 157 p~lk~L~d~fGI~~~~~TTvha~t~~q~~~D~~~~~d~r~~r~~a~NIIP~~tGaak~~~kVlPeL~gki~~~avRVPv~ 236 (364)
|++|+||++|||++++||||||+|++|+++|+++ +||||+|++++||||++||++|++++|+|+|+||++|+|+||||+
T Consensus 161 p~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~~-~d~r~~raaa~NiIPt~tGaakav~~vlP~L~gki~g~avRVPt~ 239 (337)
T PRK07403 161 PIAKVLHDNFGIIKGTMTTTHSYTGDQRILDASH-RDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRVPTP 239 (337)
T ss_pred HHHHHHHHhcCeeEEEEEEEeeecCCcccccccc-cccccccccccccccCCcchhhhhhhcCcccCCcEEEEEEEeccC
Confidence 9999999999999999999999999999999997 899999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEEeccCCCHHHHHHHHHHccCCCCCccccccCCceEeecCCCCCceeEEecCCcceecCceEEEEEEecCCC
Q psy8544 237 NVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIALNKNFVKLVTWYDNEY 316 (364)
Q Consensus 237 ~gs~~dl~~~l~k~~s~eei~~~l~~a~~~~lkgil~~~e~~~VS~df~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~ 316 (364)
++|++||+++++|++++|||+++|++|++++|||||+|+|+|+||+||+|++||+|||+.+|++++++|+|+++||||||
T Consensus 240 ~vs~~dl~v~l~k~~t~eeI~~~~~~as~~~l~gil~~~~~~~VS~D~~~~~~s~i~D~~~t~v~~~~~~k~~~WyDNE~ 319 (337)
T PRK07403 240 NVSVVDLVVQVEKRTITEQVNEVLKDASEGPLKGILEYSDLPLVSSDYRGTDASSIVDASLTMVMGGDMVKVIAWYDNEW 319 (337)
T ss_pred CcEEEEEEEEECCCCCHHHHHHHHHHHhhCccccccCeecCCEeeeeecCCCCCEEEEcccCEEecCCEEEEEEEecCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhHHHHHHhcc
Q psy8544 317 GYSCRVLDLIQYMKSK 332 (364)
Q Consensus 317 gys~r~~dl~~~~~~~ 332 (364)
||||||+||+.||.++
T Consensus 320 Gys~r~~dl~~~~~~~ 335 (337)
T PRK07403 320 GYSQRVVDLAELVARK 335 (337)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 9999999999999764
No 6
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=7.5e-114 Score=859.54 Aligned_cols=333 Identities=67% Similarity=1.073 Sum_probs=323.7
Q ss_pred ceEEEEccChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceee-cCCeEEECCEEEEEEecCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKT-EGNNIVVNGKKIAVFQKMKP 80 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~-~~~~l~i~gk~I~v~~~~~p 80 (364)
+||||||||||||+++|++.++ +++||+|||++.++++++|||||||+||+|+++++. +++.|.|+|++|.++++++|
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~dp 165 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKRDP 165 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecCCc
Confidence 6999999999999999999876 899999999888999999999999999999999997 78899999999999999999
Q ss_pred CCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCCCCCeEEcccCccccCCCCCeEecCCchhhhHHhHHH
Q psy8544 81 EEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSKDAPMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAK 160 (364)
Q Consensus 81 ~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~Lap~lk 160 (364)
++++|++.|+||||||||.|+++++++.|+++||||||||+|++|+|+||||||++.|++.++||||||||||||+|++|
T Consensus 166 ~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~l~~~~~IISnaSCTTn~Lap~lk 245 (421)
T PLN02272 166 AEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAK 245 (421)
T ss_pred ccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHHhCCCCCeeeCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998999999999999998777899999999999999999
Q ss_pred HHhhhcCeeEEEEEeeeccccchhhhcCCCcccccccccccceeecCCCChHHHHHHHccCCCCceeeEEEeceeccceE
Q psy8544 161 VIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPNVSV 240 (364)
Q Consensus 161 ~L~d~fGI~~~~~TTvha~t~~q~~~D~~~~~d~r~~r~~a~NIIP~~tGaak~~~kVlPeL~gki~~~avRVPv~~gs~ 240 (364)
+||++|||++++|||||++|++|+++|++++++||++|++++||||++||++++++||||+|+||+++||+||||++||+
T Consensus 246 ~L~~~fGI~~g~mTTvha~T~tQ~llD~~~~~d~r~~R~aa~NIIPt~tGaakav~kVLP~L~gkl~gtaVRVPv~~gs~ 325 (421)
T PLN02272 246 VVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSV 325 (421)
T ss_pred HHHHhCCeEEEEEEEEEeccCccccccCccccccccCCCcccccccCCCccchhhhhcccccCCcEEEEEEEeccCceEE
Confidence 99999999999999999999999999998778999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccCCCHHHHHHHHHHccCCCCCccccccCCceEeecCCCCCceeEEecCCcceecCceEEEEEEecCCCcchh
Q psy8544 241 VDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIALNKNFVKLVTWYDNEYGYSC 320 (364)
Q Consensus 241 ~dl~~~l~k~~s~eei~~~l~~a~~~~lkgil~~~e~~~VS~df~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gys~ 320 (364)
+||+++|++++++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++|+||++||||||||||
T Consensus 326 ~dltv~lek~~s~eev~~alk~a~~~~l~gil~y~~~~lVS~Df~~~~~ssi~D~~~t~~~~~~~vKv~~WYDNEwGys~ 405 (421)
T PLN02272 326 VDLTCRLEKSASYEDVKAAIKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSN 405 (421)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHhccccccccccccCCEeeeecCCCCCcEEEEcccCeEecCCEEEEEEEecCchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhccCCC
Q psy8544 321 RVLDLIQYMKSKDTG 335 (364)
Q Consensus 321 r~~dl~~~~~~~~~~ 335 (364)
||+||+.||.+.+.+
T Consensus 406 R~~dl~~~~~~~~~~ 420 (421)
T PLN02272 406 RVLDLIEHMALVAAS 420 (421)
T ss_pred HHHHHHHHHHhhhcC
Confidence 999999999776543
No 7
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.6e-113 Score=841.19 Aligned_cols=331 Identities=48% Similarity=0.838 Sum_probs=320.7
Q ss_pred CCceEEEEccChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCC
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMK 79 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~ 79 (364)
|++||||||||||||+++|+++++ +++||||||+ .++++++|||||||+||+|+++++.+++.|.|||++|+++++++
T Consensus 1 m~~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~-~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~d 79 (343)
T PRK07729 1 MKTKVAINGFGRIGRMVFRKAIKESAFEIVAINAS-YPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRD 79 (343)
T ss_pred CceEEEEECcChHHHHHHHHHhhcCCcEEEEecCC-CCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCC
Confidence 789999999999999999998877 8999999997 69999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCCC-CCeEEcccCccccCC-CCCeEecCCchhhhHHh
Q psy8544 80 PEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSKD-APMFVCGVNLDKYDP-SHSVVSNASCTTNCLAP 157 (364)
Q Consensus 80 p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~d-~p~vV~gVN~~~~~~-~~~IISnaSCTTn~Lap 157 (364)
|++++|++.|+||||||||.|+++++++.|+++|||+|++|+|++| ++++|||||++.|++ .++||||||||||||+|
T Consensus 80 p~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~Lap 159 (343)
T PRK07729 80 PKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCLAP 159 (343)
T ss_pred hhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHHhccCCCCEEECCchHHHHHHH
Confidence 9999999999999999999999999999999999999999999776 556799999999987 47899999999999999
Q ss_pred HHHHHhhhcCeeEEEEEeeeccccchhhhcCCCcccccccccccceeecCCCChHHHHHHHccCCCCceeeEEEeceecc
Q psy8544 158 LAKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPN 237 (364)
Q Consensus 158 ~lk~L~d~fGI~~~~~TTvha~t~~q~~~D~~~~~d~r~~r~~a~NIIP~~tGaak~~~kVlPeL~gki~~~avRVPv~~ 237 (364)
++|+||++|||++++||||||+|++|+++|+++ +||||+|++++||||++||+++++.+|||+|+||++|+|+||||++
T Consensus 160 ~lk~L~~~fgI~~~~mTTiha~T~~Q~~~D~~~-~d~rr~R~a~~niiPtstgaa~ai~~viP~l~gkl~g~avRVPt~~ 238 (343)
T PRK07729 160 VVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTPN 238 (343)
T ss_pred HHHHHHHhcCeeEEEEEEEecccCcccccccch-hhhhcccccccceecCCCcchhhHHHhccccCCeEEEEEEEeeecC
Confidence 999999999999999999999999999999996 8999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEeccCCCHHHHHHHHHHccCCCCCccccccCCceEeecCCCCCceeEEecCCcceecCceEEEEEEecCCCc
Q psy8544 238 VSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIALNKNFVKLVTWYDNEYG 317 (364)
Q Consensus 238 gs~~dl~~~l~k~~s~eei~~~l~~a~~~~lkgil~~~e~~~VS~df~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~g 317 (364)
+|++||+++++|++++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++|+|+++|||||||
T Consensus 239 ~s~~dltv~l~k~~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~D~~~t~v~~~~~~K~~~WYDNE~G 318 (343)
T PRK07729 239 VSLVDLVVDVKRDVTVEEINEAFKTAANGALKGILEFSEEPLVSIDFNTNTHSAIIDGLSTMVMGDRKVKVLAWYDNEWG 318 (343)
T ss_pred eEEEEEEEEECCCCCHHHHHHHHHHHhhCchhhccCccCCCccccccCCCCcceEEEcccCeEecCCEEEEEEEecCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhHHHHHHhccC
Q psy8544 318 YSCRVLDLIQYMKSKD 333 (364)
Q Consensus 318 ys~r~~dl~~~~~~~~ 333 (364)
|||||+||+.||.++.
T Consensus 319 ys~r~~dl~~~~~~~~ 334 (343)
T PRK07729 319 YSCRVVDLVTLVADEL 334 (343)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999998743
No 8
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=3.3e-112 Score=843.69 Aligned_cols=330 Identities=47% Similarity=0.759 Sum_probs=319.6
Q ss_pred CCceEEEEccChHHHHHHHHHhcC---CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceee-cCCeEEECCEEEEEEe
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHR---NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKT-EGNNIVVNGKKIAVFQ 76 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~---~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~-~~~~l~i~gk~I~v~~ 76 (364)
|++||||||||||||.++|+|+++ .++|++|||+ .++++++|||+|||+||+|+++++. +++.|.++|++|.+++
T Consensus 59 ~~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~-~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~ 137 (395)
T PLN03096 59 AKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT-GGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVS 137 (395)
T ss_pred cccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC-CCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEE
Confidence 678999999999999999999876 5899999997 5999999999999999999999975 6789999999999999
Q ss_pred cCCCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCCC-CCeEEcccCccccCCCCCeEecCCchhhhH
Q psy8544 77 KMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSKD-APMFVCGVNLDKYDPSHSVVSNASCTTNCL 155 (364)
Q Consensus 77 ~~~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~d-~p~vV~gVN~~~~~~~~~IISnaSCTTn~L 155 (364)
++||++++|++.|+||||||||.|+++++++.|+++|||+|+||+|+++ +||||||||++.|++.++||||||||||||
T Consensus 138 ~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~~~~~IISnaSCTTn~L 217 (395)
T PLN03096 138 DRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNCL 217 (395)
T ss_pred cCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhccCCCEEECCchHHHHH
Confidence 9999999999999999999999999999999999999999999999775 799999999999987788999999999999
Q ss_pred HhHHHHHhhhcCeeEEEEEeeeccccchhhhcCCCcccccccccccceeecCCCChHHHHHHHccCCCCceeeEEEecee
Q psy8544 156 APLAKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPV 235 (364)
Q Consensus 156 ap~lk~L~d~fGI~~~~~TTvha~t~~q~~~D~~~~~d~r~~r~~a~NIIP~~tGaak~~~kVlPeL~gki~~~avRVPv 235 (364)
+|++|+|||+|||++++|||||+||++|+++|+++ +||||+|++++||||++||+++++++|||+|+||++++|+||||
T Consensus 218 Ap~lkvL~~~fGI~~g~mTTiHa~T~~Q~llD~~~-~d~rr~Raaa~NiIPtsTGaakav~kVlP~L~gkl~g~avRVPv 296 (395)
T PLN03096 218 APFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 296 (395)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEccccccccccCCC-CccccchhhhccccccCCCcchhhhhcccccCCcEEEEEEEccc
Confidence 99999999999999999999999999999999987 89999999999999999999999999999999999999999999
Q ss_pred ccceEEEEEEEeccCCCHHHHHHHHHHccCCCCCccccccCCceEeecCCCCCceeEEecCCcceecCceEEEEEEecCC
Q psy8544 236 PNVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIALNKNFVKLVTWYDNE 315 (364)
Q Consensus 236 ~~gs~~dl~~~l~k~~s~eei~~~l~~a~~~~lkgil~~~e~~~VS~df~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE 315 (364)
++||++||++++++++++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++++|+++|||||
T Consensus 297 ~~gs~~dltv~~~~~~t~eev~~al~~aa~~~l~gil~~~~~p~VS~Df~~~~~Ssi~d~~~t~v~~~~~vKv~~WYDNE 376 (395)
T PLN03096 297 PNVSVVDLVVQVEKKTFAEEVNAAFRDAAEKELKGILAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNE 376 (395)
T ss_pred cceEEEEEEEEECCCCCHHHHHHHHHhhhhccccceEEEeCCCEeeeeecCCCCceEEEcccCEEeCCCEEEEEEEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhhHHHHHHhcc
Q psy8544 316 YGYSCRVLDLIQYMKSK 332 (364)
Q Consensus 316 ~gys~r~~dl~~~~~~~ 332 (364)
|||||||+||+.||.+.
T Consensus 377 ~Gys~r~~dl~~~~~~~ 393 (395)
T PLN03096 377 WGYSQRVVDLADIVANK 393 (395)
T ss_pred hhHHHHHHHHHHHHHhh
Confidence 99999999999999763
No 9
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=2.3e-111 Score=827.62 Aligned_cols=330 Identities=64% Similarity=1.042 Sum_probs=320.7
Q ss_pred CceEEEEccChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCc-ceee-cCCeEEECCEEEEEEecC
Q psy8544 2 AYKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKG-DVKT-EGNNIVVNGKKIAVFQKM 78 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~-~v~~-~~~~l~i~gk~I~v~~~~ 78 (364)
++||||||||||||..+|.+.++ ++++|+|||+..++++++|||||||+||+|++ +++. +|+.|.++|++|.+++++
T Consensus 5 ~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~~~ 84 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGIR 84 (338)
T ss_pred ceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEEcC
Confidence 48999999999999999998877 99999999987899999999999999999996 8998 567799999999999999
Q ss_pred CCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCCCCCeEEcccCccccCCCCCeEecCCchhhhHHhH
Q psy8544 79 KPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSKDAPMFVCGVNLDKYDPSHSVVSNASCTTNCLAPL 158 (364)
Q Consensus 79 ~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~Lap~ 158 (364)
+|++++|++.|+||||||||.|+++++++.|+++|||+|+||+|++|+|+||||||++.|+..++||||||||||||+|+
T Consensus 85 ~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dvp~iV~gVN~~~~~~~~~IISnasCTTn~Lap~ 164 (338)
T PLN02358 85 NPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPL 164 (338)
T ss_pred CcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCCCeEecCcCHHHhCCCCCEEECCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987788999999999999999
Q ss_pred HHHHhhhcCeeEEEEEeeeccccchhhhcCCCcccccccccccceeecCCCChHHHHHHHccCCCCceeeEEEeceeccc
Q psy8544 159 AKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPNV 238 (364)
Q Consensus 159 lk~L~d~fGI~~~~~TTvha~t~~q~~~D~~~~~d~r~~r~~a~NIIP~~tGaak~~~kVlPeL~gki~~~avRVPv~~g 238 (364)
+|+||++|||++++||||||+|++|+++|++++++|||+|++++||||++||++++++||||+|+||++++|+||||++|
T Consensus 165 lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~tGaaka~~kIlP~l~gkl~g~avRVPv~~g 244 (338)
T PLN02358 165 AKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDV 244 (338)
T ss_pred HHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCCcchhhhhhhccccCCCcEEEEEEEeeEcCe
Confidence 99999999999999999999999999999987799999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEeccCCCHHHHHHHHHHccCCCCCccccccCCceEeecCCCCCceeEEecCCcceecCceEEEEEEecCCCcc
Q psy8544 239 SVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIALNKNFVKLVTWYDNEYGY 318 (364)
Q Consensus 239 s~~dl~~~l~k~~s~eei~~~l~~a~~~~lkgil~~~e~~~VS~df~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy 318 (364)
|++||++++++++++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++|+|+++||||||||
T Consensus 245 s~~dl~v~~~~~~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~vk~~~WyDNE~gy 324 (338)
T PLN02358 245 SVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGY 324 (338)
T ss_pred eEEEEEEEECCCCCHHHHHHHHHHHhhccccCcccccCCceeeeecCCCCcceEEEcccCeEecCCEEEEEEEecCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHhc
Q psy8544 319 SCRVLDLIQYMKS 331 (364)
Q Consensus 319 s~r~~dl~~~~~~ 331 (364)
||||+||+.||.+
T Consensus 325 s~r~~dl~~~~~~ 337 (338)
T PLN02358 325 SSRVVDLIVHMSK 337 (338)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999964
No 10
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-111 Score=827.27 Aligned_cols=330 Identities=31% Similarity=0.546 Sum_probs=317.2
Q ss_pred CCceEEEEccChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCC-cceeecCCeEEECC-EEEEEEec
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFK-GDVKTEGNNIVVNG-KKIAVFQK 77 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~-~~v~~~~~~l~i~g-k~I~v~~~ 77 (364)
|++||||||||||||+++|+++++ ++|||||||+..++++++|||||||+||+|+ ++++.+++.|.+|| ++|.++++
T Consensus 1 m~~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~~l~i~g~~~i~~~~~ 80 (342)
T PTZ00353 1 LPITVGINGFGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGEQIVLNGTQKIRVSAK 80 (342)
T ss_pred CCeEEEEECCChHHHHHHHHHHhcCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCCEEecCCCeEEEEEec
Confidence 778999999999999999998877 8999999997679999999999999999996 68999999999999 89999999
Q ss_pred CCCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCCCCCeEEcccCccccCCCCCeEecCCchhhhHHh
Q psy8544 78 MKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSKDAPMFVCGVNLDKYDPSHSVVSNASCTTNCLAP 157 (364)
Q Consensus 78 ~~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~Lap 157 (364)
++|++++|+++|+|+||||||.|++++++.+|+++|||+|||++|++|+||||||||++.|++.++||||||||||||+|
T Consensus 81 ~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~Lap 160 (342)
T PTZ00353 81 HDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALAP 160 (342)
T ss_pred CCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCCCCCeEEecCChHHcCCCCCEEECCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998777899999999999999
Q ss_pred HHHHHhhhcCeeEEEEEeeeccccchhhhcCCC--cccccccccccceeecCCCChHHHHHHHccCCCCceeeEEEecee
Q psy8544 158 LAKVIHDNFEILEGLMTTVHAVTATQKTVDAPS--KKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPV 235 (364)
Q Consensus 158 ~lk~L~d~fGI~~~~~TTvha~t~~q~~~D~~~--~~d~r~~r~~a~NIIP~~tGaak~~~kVlPeL~gki~~~avRVPv 235 (364)
++|+||++|||++++|||||+|+ +|...|+|+ ++|||++|+|++||||++||++++++||||+|+||++++|+||||
T Consensus 161 vlkvL~~~fGI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~RaA~~nIiPtstgaakav~kVlP~L~gkl~g~avRVPt 239 (342)
T PTZ00353 161 VIRALHEVYGVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGSAFQVPV 239 (342)
T ss_pred HHHHHHHhcCeeEEEeeeeeecc-eeecCCCcccccccccccchHHhCCcccCCcchhhhhhhccccCCcEEEEEEEccc
Confidence 99999999999999999999997 677788765 489999999999999999999999999999999999999999999
Q ss_pred ccceEEEEEEEeccCCCHHHHHHHHHHccCCCCCccccccCCceEeecCCCCCceeEEecCCccee-cCceEEEEEEecC
Q psy8544 236 PNVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIAL-NKNFVKLVTWYDN 314 (364)
Q Consensus 236 ~~gs~~dl~~~l~k~~s~eei~~~l~~a~~~~lkgil~~~e~~~VS~df~~~~~s~i~d~~~~~~~-~~~~~kl~~WyDN 314 (364)
++||++||+++++|++++|||+++|+++++++|||||+|+|+|+||+||+|++ |||||+.+|+++ +++|+|+++||||
T Consensus 240 ~~vs~vdltv~~~k~~t~eein~~l~~aa~~~l~gil~~~~~~~VS~Df~~~~-~si~D~~~t~~~~~~~~vKv~~WYDN 318 (342)
T PTZ00353 240 KKGCAIDMLVRTKQPVSKEVVDSALAEAASDRLNGVLCISKRDMISVDCIPNG-KLCYDATSSSSSREGEVHKMVLWFDV 318 (342)
T ss_pred cCeEEEEEEEEECCCCCHHHHHHHHHHHhhcccCCeEEecCCCeeeeEeCCCC-CeEEEcccCeEEeCCCEEEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999 599999999995 8899999999999
Q ss_pred CCcchhhhhHHHHHHhcc
Q psy8544 315 EYGYSCRVLDLIQYMKSK 332 (364)
Q Consensus 315 E~gys~r~~dl~~~~~~~ 332 (364)
||||||||+||+.||.+.
T Consensus 319 E~Gys~r~~dl~~~~~~~ 336 (342)
T PTZ00353 319 ECYYAARLLSLVKQLHQI 336 (342)
T ss_pred chHHHHHHHHHHHHHHhc
Confidence 999999999999999754
No 11
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.6e-110 Score=820.52 Aligned_cols=328 Identities=45% Similarity=0.742 Sum_probs=318.9
Q ss_pred CCceEEEEccChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCC
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMK 79 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~ 79 (364)
|++||||||||||||.++|++.++ +++|+++||+..++++++|||||||+||+|+++++++|+.|.+||++|+++++++
T Consensus 1 m~ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~ 80 (334)
T PRK08955 1 MTIKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKA 80 (334)
T ss_pred CCeEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCC
Confidence 779999999999999999998887 8999999997789999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCCC--CCeEEcccCccccCC-CCCeEecCCchhhhHH
Q psy8544 80 PEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSKD--APMFVCGVNLDKYDP-SHSVVSNASCTTNCLA 156 (364)
Q Consensus 80 p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~d--~p~vV~gVN~~~~~~-~~~IISnaSCTTn~La 156 (364)
|++++|+ |+|+||||||.|+++++++.|+++|||+|++|+|++| +||||||||++.|++ .++||||||||||||+
T Consensus 81 ~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn~La 158 (334)
T PRK08955 81 IADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCLA 158 (334)
T ss_pred hhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHHHHH
Confidence 9999997 9999999999999999999999999999999999764 699999999999987 3789999999999999
Q ss_pred hHHHHHhhhcCeeEEEEEeeeccccchhhhcCCCcccccccccccceeecCCCChHHHHHHHccCCCCceeeEEEeceec
Q psy8544 157 PLAKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVP 236 (364)
Q Consensus 157 p~lk~L~d~fGI~~~~~TTvha~t~~q~~~D~~~~~d~r~~r~~a~NIIP~~tGaak~~~kVlPeL~gki~~~avRVPv~ 236 (364)
|++|+||++|||++++||||||+|.+|+++|+++ +||||+|++++||||++||++++++||||+|+||++++|+||||+
T Consensus 159 p~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tGaa~a~~kvlP~L~gkl~~~avRVPv~ 237 (334)
T PRK08955 159 PVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPH-KDLRRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVPLA 237 (334)
T ss_pred HHHHHHHHhcCeeEEEEEEEEeccCccccccCCC-cccccchhheeccccccCCCccccceEccccCCcEEEEEEEeccC
Confidence 9999999999999999999999999999999987 789999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEEeccCCCHHHHHHHHHHccCCCCCccccccCCceEeecCCCCCceeEEecCCcceecCceEEEEEEecCCC
Q psy8544 237 NVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIALNKNFVKLVTWYDNEY 316 (364)
Q Consensus 237 ~gs~~dl~~~l~k~~s~eei~~~l~~a~~~~lkgil~~~e~~~VS~df~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~ 316 (364)
+||++||+++|++++++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++|+|+++||||||
T Consensus 238 ~gs~~dl~v~~~~~~s~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE~ 317 (334)
T PRK08955 238 NASLTDCVFEVERDTTVEEVNALLKEAAEGELKGILGYEERPLVSIDYKTDPRSSIVDALSTMVVNGTQVKLYAWYDNEW 317 (334)
T ss_pred CeEEEEEEEEECCCCCHHHHHHHHHHhcCCCcCceeccccCCcccceeCCCCchHheehhcCEEecCCEEEEEEEeCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhHHHHHHhc
Q psy8544 317 GYSCRVLDLIQYMKS 331 (364)
Q Consensus 317 gys~r~~dl~~~~~~ 331 (364)
||||||+||+.||.+
T Consensus 318 gys~r~~dl~~~~~~ 332 (334)
T PRK08955 318 GYANRTAELARKVGL 332 (334)
T ss_pred hHHHHHHHHHHHHhc
Confidence 999999999999964
No 12
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.1e-110 Score=818.50 Aligned_cols=327 Identities=36% Similarity=0.652 Sum_probs=317.9
Q ss_pred ceEEEEccChHHHHHHHHHhcC----CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecC
Q psy8544 3 YKIGINGFGRIGRLVLREALHR----NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKM 78 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~----~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~ 78 (364)
+||||||||||||.++|+|+++ ++++|||||+ .++++++|||||||+||+|+++++++++.|.++|++|.+++++
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~-~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 80 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL-ADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHER 80 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC-CCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcC
Confidence 7999999999999999999874 7999999996 6999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCC-C-CCeEEcccCccccCCCCCeEecCCchhhhHH
Q psy8544 79 KPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSK-D-APMFVCGVNLDKYDPSHSVVSNASCTTNCLA 156 (364)
Q Consensus 79 ~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~-d-~p~vV~gVN~~~~~~~~~IISnaSCTTn~La 156 (364)
+|++++|++.|+|+||||||.|+++++++.|+++|||+|++|+|++ | .++||||||++.|++.++||||||||||||+
T Consensus 81 ~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~~~IISnasCTTn~La 160 (336)
T PRK13535 81 DIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTNCII 160 (336)
T ss_pred CcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcCCCEEECCchHHHHHH
Confidence 9999999999999999999999999999999999999999999986 5 4589999999999877889999999999999
Q ss_pred hHHHHHhhhcCeeEEEEEeeeccccchhhhcCCCcccccccccccceeecCCCChHHHHHHHccCCCCceeeEEEeceec
Q psy8544 157 PLAKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVP 236 (364)
Q Consensus 157 p~lk~L~d~fGI~~~~~TTvha~t~~q~~~D~~~~~d~r~~r~~a~NIIP~~tGaak~~~kVlPeL~gki~~~avRVPv~ 236 (364)
|++|+||++|||++++||||||+|++|+++|+++ ++||++|++++||||++||++++++||||+|+||+++||+||||+
T Consensus 161 p~lk~L~~~fgI~~~~mTT~ha~t~~Q~~vD~~~-~d~rr~r~~a~NiIP~~tgaa~a~~kilP~l~gkv~~~avRVPv~ 239 (336)
T PRK13535 161 PVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAYH-PDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISVRVPTI 239 (336)
T ss_pred HHHHHHHHhcCeeEEEEEEEEhhcCCcchhhchh-hccccccEeeeccccCccHHHhhhhhcccCCCCcEEEEEEEeCcc
Confidence 9999999999999999999999999999999986 899999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEEeccCCCHHHHHHHHHHccCCCCCccccccCCceEeecCCCCCceeEEecCCcceecCceEEEEEEecCCC
Q psy8544 237 NVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIALNKNFVKLVTWYDNEY 316 (364)
Q Consensus 237 ~gs~~dl~~~l~k~~s~eei~~~l~~a~~~~lkgil~~~e~~~VS~df~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~ 316 (364)
+||++||++++++++++||++++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++|+|+++||||||
T Consensus 240 ~gs~~dl~v~~~~~~t~eei~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE~ 319 (336)
T PRK13535 240 NVTAIDLSVTVKKPVKVNEVNQLLQKAAQGAFHGIVDYTELPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEW 319 (336)
T ss_pred CcEEEEEEEEECCCCCHHHHHHHHHHhhhccccccccccCCCccccccCCCCcceEEEcccCEEECCCEEEEEEEEcCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhHHHHHHhc
Q psy8544 317 GYSCRVLDLIQYMKS 331 (364)
Q Consensus 317 gys~r~~dl~~~~~~ 331 (364)
||||||+||+.||.+
T Consensus 320 gys~r~~d~~~~~~~ 334 (336)
T PRK13535 320 GFANRMLDTTLAMAA 334 (336)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999964
No 13
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-109 Score=798.89 Aligned_cols=329 Identities=60% Similarity=0.919 Sum_probs=320.3
Q ss_pred CceEEEEccChHHHHHHHHHhcC--CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCC
Q psy8544 2 AYKIGINGFGRIGRLVLREALHR--NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMK 79 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~--~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~ 79 (364)
++||||||||||||+++|++.++ ++|||+|||+ .+++++||||+|||+||+|.++++.+++.+.|+|+.|+++.+++
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~-t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~ 79 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERDGDIEVVAINDL-TDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERD 79 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC-CCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCC
Confidence 37999999999999999999998 5999999998 79999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCCCccEEEeecCCCCCHhhHHHHHhC-CCCEEEEeCCCCC-CCeEEcccCccccCCCCCeEecCCchhhhHHh
Q psy8544 80 PEEIPWSQTGAEYIVESTGVFKTKDTASAHLKG-GAKKVIITAPSKD-APMFVCGVNLDKYDPSHSVVSNASCTTNCLAP 157 (364)
Q Consensus 80 p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~a-GakkVIIsaps~d-~p~vV~gVN~~~~~~~~~IISnaSCTTn~Lap 157 (364)
|++++|.++|+|+|+||||.|+++|.++.|+++ |||||++|+|+++ +++||+|||++.|++.+.||||+|||||||+|
T Consensus 80 p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcLap 159 (335)
T COG0057 80 PANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLAP 159 (335)
T ss_pred hHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhhHH
Confidence 999999999999999999999999999999998 5999999999987 99999999999999889999999999999999
Q ss_pred HHHHHhhhcCeeEEEEEeeeccccchhhhcCCCcccccccccccceeecCCCChHHHHHHHccCCCCceeeEEEeceecc
Q psy8544 158 LAKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPN 237 (364)
Q Consensus 158 ~lk~L~d~fGI~~~~~TTvha~t~~q~~~D~~~~~d~r~~r~~a~NIIP~~tGaak~~~kVlPeL~gki~~~avRVPv~~ 237 (364)
++|+|+|+|||++++|||+|++|++|+++|+|| ++|||+|+|++||||++||++|++++|||+|+|||+|+++||||++
T Consensus 160 ~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dgph-~~~rr~raa~~niIp~sTgaAkav~~VlP~L~gKl~g~A~RVPt~~ 238 (335)
T COG0057 160 VAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGPH-KDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPTPN 238 (335)
T ss_pred HHHHHHHhcCeeEEEEEEEEcccCCCccccCcc-cchhhhccccCCCCcCCCcchhhhhhhCcccCCceeeEEEEecCCC
Confidence 999999999999999999999999999999998 7899999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEeccCCCHHHHHHHHHHccCCCCCccccccCCceEeecCCCCCceeEEecCCcceecCceEEEEEEecCCCc
Q psy8544 238 VSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIALNKNFVKLVTWYDNEYG 317 (364)
Q Consensus 238 gs~~dl~~~l~k~~s~eei~~~l~~a~~~~lkgil~~~e~~~VS~df~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~g 317 (364)
+|++||+++++|++++|||+++|++|+++.|||+++|+|+|+||+||++++||+|||+.+|++++++|+|+++|||||||
T Consensus 239 vs~~dl~v~l~k~~t~eeIn~alk~as~~~lkg~~~y~e~~~Vs~D~~~~~~ssI~d~~~t~~~~~~~vk~~~wydNE~g 318 (335)
T COG0057 239 VSVVDLTVELEKEVTVEEINAALKAASEIGLKGILGYTEDPLVSSDFNGDPHSSIFDASATIVLGGNLVKLVAWYDNEWG 318 (335)
T ss_pred cEEEEEEEEeCCCCCHHHHHHHHHHhhcccccceeeeEeccccccccCCCcceeEEEccceEeccCcEEEEEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred chhhhhHHHHHHhcc
Q psy8544 318 YSCRVLDLIQYMKSK 332 (364)
Q Consensus 318 ys~r~~dl~~~~~~~ 332 (364)
|++|++|+..++...
T Consensus 319 ys~r~vD~~~~~~~~ 333 (335)
T COG0057 319 YSNRVVDLLAMVAKA 333 (335)
T ss_pred chHHHHHHHHHHhhh
Confidence 999999998877654
No 14
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=3.9e-109 Score=808.68 Aligned_cols=319 Identities=57% Similarity=0.943 Sum_probs=309.9
Q ss_pred eEEEEccChHHHHHHHHHhcC---CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCC-eEEECCE-EEEEEecC
Q psy8544 4 KIGINGFGRIGRLVLREALHR---NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGN-NIVVNGK-KIAVFQKM 78 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~---~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~-~l~i~gk-~I~v~~~~ 78 (364)
||||||||||||+++|+++++ +++||||||+ .++++++|||||||+||+|+++++.+++ .|.|+|+ .|.+++++
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~-~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL-TDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC-CCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecC
Confidence 799999999999999998765 6999999997 7999999999999999999999999999 7999999 99999999
Q ss_pred CCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCCC-CCeEEcccCccccCCCCCeEecCCchhhhHHh
Q psy8544 79 KPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSKD-APMFVCGVNLDKYDPSHSVVSNASCTTNCLAP 157 (364)
Q Consensus 79 ~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~d-~p~vV~gVN~~~~~~~~~IISnaSCTTn~Lap 157 (364)
+|++++|+++|+||||||||.|+++++++.|+++|||+|++|+|++| +||||||||++.|+.+++||||||||||||+|
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~~~~~~~~IISn~sCtTn~Lap 159 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHDEYDPEERIISNASCTTNCLAP 159 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHHHhCCCCCEEecCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999877 79999999999998777899999999999999
Q ss_pred HHHHHhhhcCeeEEEEEeeeccccchhhhcCCCcccccccccccceeecCCCChHHHHHHHccCCCCceeeEEEeceecc
Q psy8544 158 LAKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPN 237 (364)
Q Consensus 158 ~lk~L~d~fGI~~~~~TTvha~t~~q~~~D~~~~~d~r~~r~~a~NIIP~~tGaak~~~kVlPeL~gki~~~avRVPv~~ 237 (364)
++|+||++|||+++.||||||+|++|+++|+++ ++||++|++++||||++||+++++++|||+|+||+++||+||||++
T Consensus 160 ~lk~L~~~fgI~~~~~TTiha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tg~ak~~~kvlP~L~gkv~~~avRVPv~~ 238 (327)
T TIGR01534 160 LAKVLDEAFGIVSGLMTTVHSYTNDQNLVDGPH-KDLRRARAAALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTPN 238 (327)
T ss_pred HHHHHHHhcCeeEEEEEEEEeecCccccccCCC-CCCcCceEeEeeeeccCCChHHHHhhccccCCCeEEEEEEEecccC
Confidence 999999999999999999999999999999987 7999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEeccCCCHHHHHHHHHHccCCCCCccccccCCceEeecCCCCCceeEEecCCcceec--CceEEEEEEecCC
Q psy8544 238 VSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIALN--KNFVKLVTWYDNE 315 (364)
Q Consensus 238 gs~~dl~~~l~k~~s~eei~~~l~~a~~~~lkgil~~~e~~~VS~df~~~~~s~i~d~~~~~~~~--~~~~kl~~WyDNE 315 (364)
||++|+++++++++++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.++++++ ++|+||++|||||
T Consensus 239 gs~~dl~v~~~~~~t~eev~~al~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~~~~k~~~WyDNE 318 (327)
T TIGR01534 239 VSLVDLVLNLEKDTTKEEVNAALKEAAEGSLKGVLGYTEDELVSSDFIGSPYSSIVDATATKVTGLGGSLVKVVAWYDNE 318 (327)
T ss_pred eEEEEEEEEECCCCCHHHHHHHHHhhhhcccCceeeeeCCCeeeeecCCCCcceEEEcccCeEEcCCCCEEEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999954 8999999999999
Q ss_pred CcchhhhhH
Q psy8544 316 YGYSCRVLD 324 (364)
Q Consensus 316 ~gys~r~~d 324 (364)
|||||||+|
T Consensus 319 ~gys~r~~d 327 (327)
T TIGR01534 319 WGYSNRVVD 327 (327)
T ss_pred ceeeeEccC
Confidence 999999987
No 15
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-107 Score=818.22 Aligned_cols=334 Identities=38% Similarity=0.623 Sum_probs=319.1
Q ss_pred CceEEEEccChHHHHHHHHHhcC-----CCcEEEEe----CCCCCHHHHHHHhhcccccccCCcceeec--CCeEEECCE
Q psy8544 2 AYKIGINGFGRIGRLVLREALHR-----NTPVVGIN----DPHLSVDYLAYMLKYDSTHGRFKGDVKTE--GNNIVVNGK 70 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~-----~~~ivaIn----d~~~~~~~~a~ll~ydS~~g~~~~~v~~~--~~~l~i~gk 70 (364)
+.||||||||||||+++|++.++ +++||||| |+ .|++++||||+|||+||+|+++++.+ ++.|++||+
T Consensus 127 ~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~-~d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liing~ 205 (477)
T PRK08289 127 PRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSE-GDLEKRASLLRRDSVHGPFNGTITVDEENNAIIANGN 205 (477)
T ss_pred CceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCC-CCHHHHHHHhhhhcCCCCCCCceEeecCCCEEEECCE
Confidence 45999999999999999998765 79999995 55 69999999999999999999999886 789999999
Q ss_pred EEEEEecCCCCCCCCcCCCcc--EEEeecCCCCCHhhHHHHHh-CCCCEEEEeCCCCC-CCeEEcccCccccCCCCCeEe
Q psy8544 71 KIAVFQKMKPEEIPWSQTGAE--YIVESTGVFKTKDTASAHLK-GGAKKVIITAPSKD-APMFVCGVNLDKYDPSHSVVS 146 (364)
Q Consensus 71 ~I~v~~~~~p~~~~w~~~gvD--iV~estG~f~s~e~a~~hl~-aGakkVIIsaps~d-~p~vV~gVN~~~~~~~~~IIS 146 (364)
.|+++++++|+++||+++|+| +|+||||.|.+++.+..|++ +||||||||+|++| +|+||||||++.|++.++|||
T Consensus 206 ~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~iV~GVN~~~~~~~~~IIS 285 (477)
T PRK08289 206 YIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIVS 285 (477)
T ss_pred EEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeEEcccCHHHhCCCCCEEE
Confidence 999999999999999999999 99999999999999999999 89999999999986 799999999999987788999
Q ss_pred cCCchhhhHHhHHHHHhhhcCeeEEEEEeeeccccchhhhcCCCcccccccccccceeecCCCChHHHHHHHccCCCCce
Q psy8544 147 NASCTTNCLAPLAKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKL 226 (364)
Q Consensus 147 naSCTTn~Lap~lk~L~d~fGI~~~~~TTvha~t~~q~~~D~~~~~d~r~~r~~a~NIIP~~tGaak~~~kVlPeL~gki 226 (364)
|||||||||+|++|+|||+|||++++||||||||++|+++|+++ ++|||+|++++||||++||++++++||||+|+||+
T Consensus 286 nASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~lvD~~h-kd~RrgRaaa~NIIptsTGAAkAv~kVLP~L~GKl 364 (477)
T PRK08289 286 AASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLIDNYH-KGDRRGRSAPLNMVITETGAAKAVAKALPELAGKL 364 (477)
T ss_pred CCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChHHhhhhh-hcCcccceeeeeeEecCCChhhhhhhcccccCCcE
Confidence 99999999999999999999999999999999999999999997 88999999999999999999999999999999999
Q ss_pred eeEEEeceeccceEEEEEEEeccCCCHHHHHHHHHHcc-CCCCCccccccCC-ceEeecCCCCCceeEEecCCcceecCc
Q psy8544 227 TGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAAS-QGPMKGILGYTED-EVVSSDFNGEVCSSVFDAKAGIALNKN 304 (364)
Q Consensus 227 ~~~avRVPv~~gs~~dl~~~l~k~~s~eei~~~l~~a~-~~~lkgil~~~e~-~~VS~df~~~~~s~i~d~~~~~~~~~~ 304 (364)
+|+|+||||++||++||++++++++++|||+++|++++ +++|+|||+|+++ |+||+||+|++||+|||+.+|+++ ++
T Consensus 365 tg~avRVPt~nvS~vdLtv~l~k~vt~eevn~~lk~aa~~~~L~gil~yt~~~~lVSsDfig~~~SsI~D~~~T~v~-g~ 443 (477)
T PRK08289 365 TGNAIRVPTPNVSMAILNLNLEKETSREELNEYLRQMSLHSPLQNQIDYTDSTEVVSSDFVGSRHAGVVDSQATIVN-GN 443 (477)
T ss_pred EEEEEEeccccEEEEEEEEEECCCCCHHHHHHHHHHHhhcCCccceeeecccCCeeeeeecCCCchhheehhccEEc-CC
Confidence 99999999999999999999999999999999999999 4899999999999 799999999999999999999998 78
Q ss_pred eEEEEEEecCCCcchhhhhHHHHHHhccCCCCCC
Q psy8544 305 FVKLVTWYDNEYGYSCRVLDLIQYMKSKDTGSKP 338 (364)
Q Consensus 305 ~~kl~~WyDNE~gys~r~~dl~~~~~~~~~~~~~ 338 (364)
++|+++||||||||||||+|++.||.+......|
T Consensus 444 ~vkv~~WYDNE~GYS~rvvdl~~~~~~~~~~~~~ 477 (477)
T PRK08289 444 RAVLYVWYDNEFGYSCQVVRVMEQMAGVRYPTYP 477 (477)
T ss_pred EEEEEEEecCchhHHHHHHHHHHHHHhccCCCCC
Confidence 9999999999999999999999999887655443
No 16
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=1.4e-105 Score=784.32 Aligned_cols=319 Identities=39% Similarity=0.723 Sum_probs=309.6
Q ss_pred eEEEEccChHHHHHHHHHhcC----CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCC
Q psy8544 4 KIGINGFGRIGRLVLREALHR----NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMK 79 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~----~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~ 79 (364)
||||||||||||.++|+|.++ +|+|++|||+ .++++++|||+|||+||+|+++++++++.|.++|+.|.++++++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~-~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNEL-ADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecC-CCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence 799999999999999999875 4999999996 69999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCC-C-CCeEEcccCccccCCCCCeEecCCchhhhHHh
Q psy8544 80 PEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSK-D-APMFVCGVNLDKYDPSHSVVSNASCTTNCLAP 157 (364)
Q Consensus 80 p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~-d-~p~vV~gVN~~~~~~~~~IISnaSCTTn~Lap 157 (364)
|++++|++.|+|+||||||.|.++++++.|+++||++|++|+|++ | .++||||||++.|++.++||||||||||||+|
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~~~IISnasCtTn~lap 159 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAEHTIVSNASCTTNCIVP 159 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCCCCEEeCCCcHHHHHHH
Confidence 999999999999999999999999999999999999999999976 4 45899999999998778899999999999999
Q ss_pred HHHHHhhhcCeeEEEEEeeeccccchhhhcCCCcccccccccccceeecCCCChHHHHHHHccCCCCceeeEEEeceecc
Q psy8544 158 LAKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPN 237 (364)
Q Consensus 158 ~lk~L~d~fGI~~~~~TTvha~t~~q~~~D~~~~~d~r~~r~~a~NIIP~~tGaak~~~kVlPeL~gki~~~avRVPv~~ 237 (364)
++|+||++|||+++.||||||+|++|+++|+++ ++||++|.+++||||++||++++++||||+|+||+++|||||||++
T Consensus 160 ~lk~L~~~fgI~~~~~tTvha~t~~q~~vD~~~-~d~r~~r~a~~NiIP~~t~~a~a~~kilP~L~gkl~~~avRVPv~~ 238 (325)
T TIGR01532 160 LIKLLDDAIGIESGTITTIHSAMNDQQVIDAYH-HDLRRTRAASQSIIPVDTKLARGIERLFPEFAGRFEAIAVRVPTVN 238 (325)
T ss_pred HHHHHHHhcCeeEEEEEEEEhhcCCccccccch-hhccccchHhhCeeeCCccHHHHHHHhCcccCCeEEEEEEEecccC
Confidence 999999999999999999999999999999996 8999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEeccCCCHHHHHHHHHHccCCCCCccccccCCceEeecCCCCCceeEEecCCcceecCceEEEEEEecCCCc
Q psy8544 238 VSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIALNKNFVKLVTWYDNEYG 317 (364)
Q Consensus 238 gs~~dl~~~l~k~~s~eei~~~l~~a~~~~lkgil~~~e~~~VS~df~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~g 317 (364)
||++||++++++++++||++++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++|+|+++|||||||
T Consensus 239 ~s~~dl~v~~~~~~~~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE~g 318 (325)
T TIGR01532 239 VTALDLSVTTKRDVKANEVNRVLREAAQGPLRGIVDYTELPLVSCDFNHDPHSAIVDGTQTRVSGPRLVKLLVWCDNEWG 318 (325)
T ss_pred cEEEEEEEEECCCCCHHHHHHHHHHhhccccccccccccCCccccccCCCCcceEEEcccCEEecCCEEEEEEEeCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhH
Q psy8544 318 YSCRVLD 324 (364)
Q Consensus 318 ys~r~~d 324 (364)
|||||+|
T Consensus 319 ys~r~~d 325 (325)
T TIGR01532 319 FANRMLD 325 (325)
T ss_pred eeeEccC
Confidence 9999987
No 17
>KOG0657|consensus
Probab=100.00 E-value=1.8e-89 Score=641.50 Aligned_cols=284 Identities=68% Similarity=1.073 Sum_probs=275.3
Q ss_pred HHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCCCCCcCCCcc
Q psy8544 13 IGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEEIPWSQTGAE 91 (364)
Q Consensus 13 IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~~~w~~~gvD 91 (364)
|||+++ + + ++++|+|||+++++++++|||+|||+||+|+++++.++.+++++|++|.++++++|..++|.+.++|
T Consensus 1 ig~~~~---~-~~~v~vv~indpfi~~~~~~y~~kydsthG~f~g~~k~~~~~~i~~G~~i~~~~~~~p~~i~w~~~g~~ 76 (285)
T KOG0657|consen 1 IGRLVL---Q-RNSVDVVAINDPFIDLNYLAYMLKYDSTHGKFHGTVKAENFKLIINGNPITIFQFRDPAKIPWGAKGAD 76 (285)
T ss_pred CCcccc---c-cCCcccccccCcccccccccccccccccCCccccceeecCCceeecCceEEeecccCcccCccccccce
Confidence 577777 2 5 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCCCCCeEEcccCccccCCCCCeEecCCchhhhHHhHHHHHhhhcCeeEE
Q psy8544 92 YIVESTGVFKTKDTASAHLKGGAKKVIITAPSKDAPMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEG 171 (364)
Q Consensus 92 iV~estG~f~s~e~a~~hl~aGakkVIIsaps~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~Lap~lk~L~d~fGI~~~ 171 (364)
+|+|+||.|++.|.+..|+++|||+||||+||+|.||||+|||+++|+++..||||+|||||||||++|+|||+|||+++
T Consensus 77 ~v~e~tg~f~t~e~~~~~~~~gakkviisaps~dapmfv~gVn~~~y~~~~~iiSnascttnclaPlaKVi~d~fgI~Eg 156 (285)
T KOG0657|consen 77 IVVESTGVFTTMEKPGKHFQGGAKKVIISAPSADAPMFVMGVNGEKYDNSLDIISNASCTTNCLAPLAKVIHDNFGIMEG 156 (285)
T ss_pred eEeeccccccccccccccccccceEEEeccccCCCCcccccccccccccccceeechhhhhccccchhheeccccccccc
Confidence 99999999999999999999999999999999999999999999999987779999999999999999999999999999
Q ss_pred EEEeeeccccchhhhcCCCcccccccccccceeecCCCChHHHHHHHccCCCCceeeEEEeceeccceEEEEEEEeccCC
Q psy8544 172 LMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPNVSVVDLTVRLCCDV 251 (364)
Q Consensus 172 ~~TTvha~t~~q~~~D~~~~~d~r~~r~~a~NIIP~~tGaak~~~kVlPeL~gki~~~avRVPv~~gs~~dl~~~l~k~~ 251 (364)
+|||+|++|++|+++|||++++||.+|.+.|||||++||++|+++|+||||+||++||+|||||+ ++++||+++++|++
T Consensus 157 LMtTvha~tatQktvdgps~k~wr~g~~a~qNIiPASTgAakAVgKvipeLngKLtGMAf~Vpt~-vsVvdl~~~~~k~a 235 (285)
T KOG0657|consen 157 LMTTVHAITATQKTVDGPSGKLWRDGRRALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTP-VSVVDLTCHLEKPA 235 (285)
T ss_pred cccceeeeccccccccCcccccccccchhhhccccccccHHHHHHHHhHHhhCccccceecCCcc-eEeeeeeccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CHHHHHHHHHHccCCCCCccccccCCceEeecCCCCCceeEEecCCcceecCceEEEEEEecCCCcchhhhhHHHHHHhc
Q psy8544 252 TYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIALNKNFVKLVTWYDNEYGYSCRVLDLIQYMKS 331 (364)
Q Consensus 252 s~eei~~~l~~a~~~~lkgil~~~e~~~VS~df~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gys~r~~dl~~~~~~ 331 (364)
++|+|+++++++++++||||| ||+ +| |+|||||||||+|++||+.||++
T Consensus 236 ~~ddikkvvk~~~~~~lkGIL--te~--------------------------~f---ISWYDNE~GYS~rVvDl~~h~as 284 (285)
T KOG0657|consen 236 KYDDIKKVVKLASEIPLKGIL--TEH--------------------------HF---ISWYDNEFGYSNRVVDLMEHMAS 284 (285)
T ss_pred chHHHHHHHHHhhcccccccc--ccc--------------------------ce---eeeeccccccchHHHHHHHHHhc
Confidence 999999999999999999999 887 45 89999999999999999999987
Q ss_pred c
Q psy8544 332 K 332 (364)
Q Consensus 332 ~ 332 (364)
+
T Consensus 285 k 285 (285)
T KOG0657|consen 285 K 285 (285)
T ss_pred C
Confidence 4
No 18
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=7.9e-55 Score=426.49 Aligned_cols=233 Identities=24% Similarity=0.293 Sum_probs=209.3
Q ss_pred EEEEccChHHHHHHHHHhcC-CCcEEEEeCCCCCHH---HHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCC
Q psy8544 5 IGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVD---YLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKP 80 (364)
Q Consensus 5 VaInG~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~---~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p 80 (364)
|||||||||||.++|++.++ +++||+|||. +++ +++|+++|||.|+.+...++.+++.+.++|+ +
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~--~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~---------~ 69 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKT--SPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGT---------L 69 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecC--ChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCC---------H
Confidence 69999999999999998877 9999999994 788 7888888999995444467777777877765 3
Q ss_pred CCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCCC--CCeEEcccCccccCCCCCeEecCCchhhhHHhH
Q psy8544 81 EEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSKD--APMFVCGVNLDKYDPSHSVVSNASCTTNCLAPL 158 (364)
Q Consensus 81 ~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~d--~p~vV~gVN~~~~~~~~~IISnaSCTTn~Lap~ 158 (364)
+++. .++|+|++|||.+..++.++.|+++|+|+|++++|++| +++||+|+|++.|.+.+ ||||+|||||||+|+
T Consensus 70 eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~~-~vs~aSCtTn~Lap~ 145 (333)
T TIGR01546 70 EDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGKD-YVRVVSCNTTGLVRT 145 (333)
T ss_pred HHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcCc-eEEecCchHhhHHHH
Confidence 3332 26999999999999999999999999999999999987 47899999999998644 999999999999999
Q ss_pred HHHHhhhcCeeEEEEEeeeccccchhhhcCCCcccccccccccceeecC-CC---ChHHHHHHHccCCCCceeeEEEece
Q psy8544 159 AKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPA-ST---GAAKAVAKVIPDLEGKLTGMAFRVP 234 (364)
Q Consensus 159 lk~L~d~fGI~~~~~TTvha~t~~q~~~D~~~~~d~r~~r~~a~NIIP~-~t---Gaak~~~kVlPeL~gki~~~avRVP 234 (364)
+++|+++|||+++.|||+|+ |++| +|+||+| ++||||+ +| +.++++++|+|+|+ ++++++|||
T Consensus 146 ~~~L~~~fGI~~~~~Ttvh~-t~dq--------~d~rrgr--~~~IiP~~~t~ps~~a~av~~VlP~L~--i~g~AvrVP 212 (333)
T TIGR01546 146 LNAINDYSKVDKVRAVMVRR-AADP--------NDVKKGP--INAIVPDPVTVPSHHGPDVQTVIPNLN--IETMAFVVP 212 (333)
T ss_pred HHHHHHhcCeEEEEEEEEee-cCCh--------hhhccCc--hhceEeCCCCCCCchHHHHHHcCCCCC--ccEEEEEeC
Confidence 99999999999999999997 9888 3889998 6999999 44 66899999999997 999999999
Q ss_pred eccceEEEEEEEeccCCCHHHHHHHHHHccC
Q psy8544 235 VPNVSVVDLTVRLCCDVTYDEIKAKVKAASQ 265 (364)
Q Consensus 235 v~~gs~~dl~~~l~k~~s~eei~~~l~~a~~ 265 (364)
|+++|++||++++++++++|||+++|+++++
T Consensus 213 t~~vs~~dl~v~l~~~~t~eeV~~~l~~~~r 243 (333)
T TIGR01546 213 TTLMHVHSIMVELKKPVTKDDIIDILENTPR 243 (333)
T ss_pred CCCcEEEEEEEEECCCCCHHHHHHHHHhCCc
Confidence 9999999999999999999999999999885
No 19
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=100.00 E-value=3.9e-51 Score=362.76 Aligned_cols=157 Identities=63% Similarity=0.962 Sum_probs=152.9
Q ss_pred HHhHHHHHhhhcCeeEEEEEeeeccccchhhhcCCCcccccccccccceeecCCCChHHHHHHHccCCCCceeeEEEece
Q psy8544 155 LAPLAKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVP 234 (364)
Q Consensus 155 Lap~lk~L~d~fGI~~~~~TTvha~t~~q~~~D~~~~~d~r~~r~~a~NIIP~~tGaak~~~kVlPeL~gki~~~avRVP 234 (364)
|||++|+|+++|||++++|||+|++|++|+++|+|+ +|||++|++++||||++||+++++++|||+|+||++++++|||
T Consensus 1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q~~~D~~~-~d~rrgr~a~~niip~~t~aa~av~~VlP~L~gki~g~a~rVP 79 (157)
T PF02800_consen 1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQKLVDGPH-KDWRRGRAAAQNIIPTSTGAAKAVGKVLPELNGKITGMAVRVP 79 (157)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEESSTTSBSSSS---SSTGTTSBTTTSSEEEEESHHHHHHHHSGGGTTTEEEEEEEES
T ss_pred CcchhhhhhhhcCEEEEEEEEEeccCCccceeeecc-ccccccccccccccccccccchhhhhhhhhccCcceeeEEeee
Confidence 799999999999999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred eccceEEEEEEEeccCCCHHHHHHHHHHccCCCCCccccccCCceEeecCCCCCceeEEecCCcceecCceEEEEEEe
Q psy8544 235 VPNVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIALNKNFVKLVTWY 312 (364)
Q Consensus 235 v~~gs~~dl~~~l~k~~s~eei~~~l~~a~~~~lkgil~~~e~~~VS~df~~~~~s~i~d~~~~~~~~~~~~kl~~Wy 312 (364)
|+++|++||+++++|++++|||+++|+++++++++||++|+|+|+||+||+|++||+|||+.++++++++++|+++||
T Consensus 80 t~~~s~~dl~~~l~k~~t~eeV~~~~~~aa~~~~~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~v~~~~~vkl~~WY 157 (157)
T PF02800_consen 80 TPNVSLHDLTVELEKPVTKEEVNEALKQAARGPLKGILGYTEDPLVSSDFNGDRHSSIFDAEATIVVNGNLVKLFAWY 157 (157)
T ss_dssp SSSEEEEEEEEEESSSS-HHHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGEEEEETTEEEEEEEE
T ss_pred ecccCceEEEEecccchhhhhhhhhhhhhhHhhhhhhheecccceEEeccCCCceEEEEEhHHCeEECCCEEEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
No 20
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=4.8e-47 Score=374.48 Aligned_cols=249 Identities=24% Similarity=0.306 Sum_probs=202.3
Q ss_pred CceEEEEccChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcc--cccccCCccee-ecCCeEEECCEEEEEEec
Q psy8544 2 AYKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYD--STHGRFKGDVK-TEGNNIVVNGKKIAVFQK 77 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~yd--S~~g~~~~~v~-~~~~~l~i~gk~I~v~~~ 77 (364)
++||||||+|+|||.+++++.++ +++|++|+|. ++++.+|+++|. ..|++++..++ ..+..+.+.+.
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~--~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~------- 71 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKT--KPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGT------- 71 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECC--ChHHHHHHHHhcCCCccccCccccccccCCceEEcCC-------
Confidence 37999999999999999999988 9999999996 689999998842 15666655544 33334444332
Q ss_pred CCCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCC-CCC--eEEcccCccccCCCCCeEecCCchhhh
Q psy8544 78 MKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSK-DAP--MFVCGVNLDKYDPSHSVVSNASCTTNC 154 (364)
Q Consensus 78 ~~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~-d~p--~vV~gVN~~~~~~~~~IISnaSCTTn~ 154 (364)
++.+. .++|+||||||.+.+.+.++.|+++| ++||+++|+. ++| +||||||++.+.. .++|+||||||||
T Consensus 72 --~~el~---~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~~~~~~~~v~~vN~~~~~~-~~~v~~~sCtT~~ 144 (341)
T PRK04207 72 --IEDLL---EKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKAEVAGVSFNALANYEEALG-KDYVRVVSCNTTG 144 (341)
T ss_pred --hhHhh---ccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCCCCCCCcEEeeECHHHhCC-CCcEEccChHHHH
Confidence 22221 26999999999999999999999999 6888888864 343 4899999999975 3499999999999
Q ss_pred HHhHHHHHhhhcCeeEEEEEeeeccccchhhhcCCCcccccccccccceeecCC----CChHHHHHHHccCCCCceeeEE
Q psy8544 155 LAPLAKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPAS----TGAAKAVAKVIPDLEGKLTGMA 230 (364)
Q Consensus 155 Lap~lk~L~d~fGI~~~~~TTvha~t~~q~~~D~~~~~d~r~~r~~a~NIIP~~----tGaak~~~kVlPeL~gki~~~a 230 (364)
|+|+||+|+++|||+++.|||||++|+ + ++++ |++++||+|.. +...+++++|+|+|+ ++++|
T Consensus 145 l~~~l~~L~~~fgI~~~~vTtv~a~td-------~--~~~~--r~~~~niip~p~~~~~~~g~~v~~vlp~l~--i~~~a 211 (341)
T PRK04207 145 LCRTLCALDRAFGVKKVRATLVRRAAD-------P--KEVK--RGPINAIVPDPVTVPSHHGPDVKTVLPDLD--ITTMA 211 (341)
T ss_pred HHHHHHHHHHhcCceEEEEEEEEcCCC-------c--chhh--HHHhcCcCCCCCCCCCCchhHHHhhCCCCc--eEEEE
Confidence 999999999999999999999999883 3 3553 68999999752 233479999999996 99999
Q ss_pred EeceeccceEEEEEEEeccCCCHHHHHHHHHHccCC----CCCccccccCCceE
Q psy8544 231 FRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAASQG----PMKGILGYTEDEVV 280 (364)
Q Consensus 231 vRVPv~~gs~~dl~~~l~k~~s~eei~~~l~~a~~~----~lkgil~~~e~~~V 280 (364)
+||||++||+++++++|++++++|||+++|++++.- .-.|+.+ +.+++-
T Consensus 212 vrVPv~~gh~~~v~v~l~~~~t~eev~~~l~~~~~i~~~~~~~~~~s-~~~~~~ 264 (341)
T PRK04207 212 VKVPTTLMHMHSVNVELKKPVTKEEVLEALENTPRILLVRASDGIDS-TAELIE 264 (341)
T ss_pred EEcCCCCceEEEEEEEECCCCCHHHHHHHHHhCCCCEeeccccCCCC-hHHHhH
Confidence 999999999999999999999999999999998752 2245655 544443
No 21
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=100.00 E-value=1.6e-47 Score=337.29 Aligned_cols=148 Identities=61% Similarity=1.066 Sum_probs=140.0
Q ss_pred ceEEEEccChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPE 81 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~ 81 (364)
|||||||||||||+++|++..+ +|+||+|||+..++++++|||+|||+||+|++.++.+++.|.++|+.|+++++++|+
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~dp~ 80 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERDPE 80 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSSGG
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhhhhc
Confidence 6999999999999999999987 999999999977999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCCC--CCeEEcccCccccCCCCCeEecCCc
Q psy8544 82 EIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSKD--APMFVCGVNLDKYDPSHSVVSNASC 150 (364)
Q Consensus 82 ~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~d--~p~vV~gVN~~~~~~~~~IISnaSC 150 (364)
++||+++|+|||+||||.|.+++.++.|+++||||||+|+|++| +||||+|||++.|+++++||||+||
T Consensus 81 ~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~~~iIS~aSC 151 (151)
T PF00044_consen 81 EIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPEHHIISNASC 151 (151)
T ss_dssp GSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTTTSEEEE--H
T ss_pred ccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCCCCEEEccCC
Confidence 99999999999999999999999999999999999999999986 8999999999999987799999999
No 22
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-45 Score=356.16 Aligned_cols=232 Identities=16% Similarity=0.208 Sum_probs=200.0
Q ss_pred CceEEEEc-cChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCC
Q psy8544 2 AYKIGING-FGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKP 80 (364)
Q Consensus 2 ~irVaInG-~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p 80 (364)
+++||| | +|.|||.++++|++|+|++ .++ ++|. | ..++.|+++.|+|+++.|. +.
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv---~~l--------~l~~--s-------~~~s~gk~i~f~g~~~~V~---~l 58 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEI---EQI--------SIVE--I-------EPFGEEQGIRFNNKAVEQI---AP 58 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCch---hhe--------eecc--c-------ccccCCCEEEECCEEEEEE---EC
Confidence 589999 9 9999999999999999998 665 5662 2 2356689999999999993 35
Q ss_pred CCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCC-----CCCeEEcccCccccCC--CCCeEecCCchhh
Q psy8544 81 EEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSK-----DAPMFVCGVNLDKYDP--SHSVVSNASCTTN 153 (364)
Q Consensus 81 ~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~-----d~p~vV~gVN~~~~~~--~~~IISnaSCTTn 153 (364)
+..+|. ++|+||+ +|...++++++.+.++|| +|||++|+ |+||+|||||++.+.. .++||+||||||.
T Consensus 59 ~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanPNCsTi 133 (322)
T PRK06901 59 EEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLPDPQVS 133 (322)
T ss_pred CccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECCcHHHH
Confidence 555664 8999999 999999999999999999 99999985 6999999999999876 3689999999999
Q ss_pred hHHhHHHHHhhhcCeeEEEEEeeeccccchh------------hhcCCCcccccccccccceeecCC-CChHHHHHHHcc
Q psy8544 154 CLAPLAKVIHDNFEILEGLMTTVHAVTATQK------------TVDAPSKKMWRDGRGANQNIIPAS-TGAAKAVAKVIP 220 (364)
Q Consensus 154 ~Lap~lk~L~d~fGI~~~~~TTvha~t~~q~------------~~D~~~~~d~r~~r~~a~NIIP~~-tGaak~~~kVlP 220 (364)
+|+++|+|||+.|||+++.+|||||+||+++ ++++.... ...+++|||+||+. .|-..+.+||||
T Consensus 134 ~l~~aL~pL~~~~~l~rv~VsTyQavSGaG~~gv~eL~~qt~~~~n~~~~~--~~~~~iAFNviP~ig~~m~~EtrKIl~ 211 (322)
T PRK06901 134 QLALALAPFLQEQPLSQIFVTSLLPASYTDAETVKKLAGQTARLLNGIPLD--EEEQRLAFDVFPANAQNLELQLQKIFP 211 (322)
T ss_pred HHHHHHHHHHHhcCCcEEEEEeecchhhcCHhHHHHHHHHHHHHhCCCCCC--CCceeeeccccccCCccHHHHHHHHhC
Confidence 9999999999999999999999999999853 22322111 22489999999999 467788899998
Q ss_pred CCCCceeeEEEeceeccceEEEEEEEeccCCCHHHHHHHHHHccC
Q psy8544 221 DLEGKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAASQ 265 (364)
Q Consensus 221 eL~gki~~~avRVPv~~gs~~dl~~~l~k~~s~eei~~~l~~a~~ 265 (364)
+| .++++||+||||++||++.++++|+++++.++++++|++++.
T Consensus 212 ~l-~~VsaTcVRVPV~~GHs~sV~ve~e~~~~~e~~~~~l~~~~g 255 (322)
T PRK06901 212 QL-ENVTFHSIQVPVFYGLAQMVTALSEYELDIESQLAEWQQNNL 255 (322)
T ss_pred Cc-ccEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHhCCC
Confidence 87 369999999999999999999999999999999999999874
No 23
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=100.00 E-value=9.5e-43 Score=306.58 Aligned_cols=147 Identities=57% Similarity=0.963 Sum_probs=141.1
Q ss_pred ceEEEEccChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPE 81 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~ 81 (364)
+||||+|||||||.++|++.++ ++++++|+|+ .++++++|||+|||+||+|..+++.+++.|.+||+.|.++++++|.
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~-~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p~ 79 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL-TDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPA 79 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC-CCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCChH
Confidence 5999999999999999999877 9999999997 7999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCCC-CCeEEcccCccccCCCCCeEecCCc
Q psy8544 82 EIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSKD-APMFVCGVNLDKYDPSHSVVSNASC 150 (364)
Q Consensus 82 ~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~d-~p~vV~gVN~~~~~~~~~IISnaSC 150 (364)
+++|++.|+|||+||||.|.+++.++.|+++||||||||+|++| +++||+|||++.|+++++||||+||
T Consensus 80 ~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~~~~~~~iiS~aSC 149 (149)
T smart00846 80 NLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDEYDPEDHIVSNASC 149 (149)
T ss_pred HCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHHcCCCCCEEEcCCC
Confidence 99999999999999999999999999999999999999999987 4699999999999987779999999
No 24
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-41 Score=327.62 Aligned_cols=235 Identities=25% Similarity=0.347 Sum_probs=190.6
Q ss_pred CceEEEEc-cChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCe-EEECCEEEEEEecCC
Q psy8544 2 AYKIGING-FGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNN-IVVNGKKIAVFQKMK 79 (364)
Q Consensus 2 ~irVaInG-~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~-l~i~gk~I~v~~~~~ 79 (364)
++||||+| +|.||+.+++.|++++|++ ... ++| ++.++.|.+ +.|.|+.+.+.. .-
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~---~~~--------~~~----------AS~rSaG~~~~~f~~~~~~v~~-~~ 58 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPF---EEL--------VLL----------ASARSAGKKYIEFGGKSIGVPE-DA 58 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCc---ceE--------EEE----------ecccccCCccccccCccccCcc-cc
Confidence 37999999 9999999999999976665 111 233 133556666 888888776632 11
Q ss_pred CCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCC-----CCCeEEcccCccccCCC--CC-eEecCCch
Q psy8544 80 PEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSK-----DAPMFVCGVNLDKYDPS--HS-VVSNASCT 151 (364)
Q Consensus 80 p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~-----d~p~vV~gVN~~~~~~~--~~-IISnaSCT 151 (364)
.+...|. ++||||+|.|...++++++...++|+ +|||++|+ |+|+||||||++.+... ++ ||+|||||
T Consensus 59 ~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~IianpNCs 134 (334)
T COG0136 59 ADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANPNCS 134 (334)
T ss_pred ccccccc--cCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEECCChH
Confidence 5566776 89999999999999999999999998 99999985 79999999999997652 34 99999999
Q ss_pred hhhHHhHHHHHhhhcCeeEEEEEeeeccccchh-hhc-----------CCCcccccccccccceeecCCC-----ChHHH
Q psy8544 152 TNCLAPLAKVIHDNFEILEGLMTTVHAVTATQK-TVD-----------APSKKMWRDGRGANQNIIPAST-----GAAKA 214 (364)
Q Consensus 152 Tn~Lap~lk~L~d~fGI~~~~~TTvha~t~~q~-~~D-----------~~~~~d~r~~r~~a~NIIP~~t-----Gaak~ 214 (364)
|.+|+++||||+++|||+++.+|||||+||++. .++ +... + -.++++|||+||++. |++++
T Consensus 135 t~~l~~aL~PL~~~~~i~~v~VsTyQAvSGAG~~~~~el~~q~~~~~~~~~i-~-~~~~~iAfNviP~I~~~~~ng~t~E 212 (334)
T COG0136 135 TIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAEGGVELAGQTDALLNGIPI-L-PIGYPLAFNVIPHIDGFLDNGYTKE 212 (334)
T ss_pred HHHHHHHHHHHHhhcCceEEEEEEeehhhhcCccchhhHHHHHhhhccCccc-c-cccccccccccccCCccccCCccHH
Confidence 999999999999999999999999999999865 222 1111 1 126789999999985 46665
Q ss_pred HH-------HHccCCCCceeeEEEeceeccceEEEEEEEeccCCCHHHHHHH-HHHcc
Q psy8544 215 VA-------KVIPDLEGKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAK-VKAAS 264 (364)
Q Consensus 215 ~~-------kVlPeL~gki~~~avRVPv~~gs~~dl~~~l~k~~s~eei~~~-l~~a~ 264 (364)
++ |||+.-..+++++|+||||++||++.++++|+++++.+|+++. +.+++
T Consensus 213 E~K~~~Et~KIlg~~~~~VsatcvRVPV~~GHse~v~ve~~~~~~~~e~~~~~l~~ap 270 (334)
T COG0136 213 EWKIEAETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKDVDPEEIREELLPSAP 270 (334)
T ss_pred HHHHHHHHHHHhCCCCCceEEEEEEcceecccceEEEEEecCCCCHHHHHHHHhccCC
Confidence 54 5677666789999999999999999999999999999999965 44444
No 25
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=100.00 E-value=2.7e-41 Score=334.08 Aligned_cols=234 Identities=16% Similarity=0.205 Sum_probs=191.2
Q ss_pred ceEEEEc-cChHHHHHHHHHh-cCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCC
Q psy8544 3 YKIGING-FGRIGRLVLREAL-HRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKP 80 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~-~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p 80 (364)
+||||+| +|.|||.++++|+ +++|++ ..+ ++| . +-++.+..+.++|+.+.+. +.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~---~~~--------~~~--s--------s~~s~g~~~~f~~~~~~v~---~~ 56 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDA---IRP--------VFF--S--------TSQLGQAAPSFGGTTGTLQ---DA 56 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCcc---ccE--------EEE--E--------chhhCCCcCCCCCCcceEE---cC
Confidence 4899999 9999999999998 559997 333 333 1 2355677888888887663 23
Q ss_pred CCC-CCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCC-----CCCeEEcccCccccCCC--CCe--EecCCc
Q psy8544 81 EEI-PWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSK-----DAPMFVCGVNLDKYDPS--HSV--VSNASC 150 (364)
Q Consensus 81 ~~~-~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~-----d~p~vV~gVN~~~~~~~--~~I--ISnaSC 150 (364)
+.+ .|. ++|+||+|+|...++++++...++|+..+|||++|+ |+|++||+||++.+..+ ++| |+||||
T Consensus 57 ~~~~~~~--~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~ianPNC 134 (366)
T TIGR01745 57 FDIDALK--ALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTFVGGNC 134 (366)
T ss_pred ccccccc--CCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeEECcCH
Confidence 333 454 899999999999999999999999944499999985 69999999999988753 567 899999
Q ss_pred hhhhHHhHHHHHhhhcCeeEEEEEeeeccccchh------------hhcC--------C-----------------Cccc
Q psy8544 151 TTNCLAPLAKVIHDNFEILEGLMTTVHAVTATQK------------TVDA--------P-----------------SKKM 193 (364)
Q Consensus 151 TTn~Lap~lk~L~d~fGI~~~~~TTvha~t~~q~------------~~D~--------~-----------------~~~d 193 (364)
||++|+++|+|||+.|||+++.+|||||+||+++ ++++ . ....
T Consensus 135 st~~l~~aL~pL~~~~~i~~v~VsTyQAvSGAG~~g~~eL~~Qt~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~ 214 (366)
T TIGR01745 135 TVSLMLMSLGGLFANDLVEWVSVATYQAASGGGARHMRELLTQMGHLYGHVEDELATPSSAILDIERKVTKLTRSGELPV 214 (366)
T ss_pred HHHHHHHHHHHHHhccCccEEEEEechhhhhcCHHHHHHHHHHHHHHhccccccccccchhhhhhccccccccccCCCCc
Confidence 9999999999999999999999999999999863 1221 0 1122
Q ss_pred ccccccccceeecCC-----CChHHHH-------HHHc---cCCCCceeeEEEeceeccceEEEEEEEeccCCCHHHHHH
Q psy8544 194 WRDGRGANQNIIPAS-----TGAAKAV-------AKVI---PDLEGKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKA 258 (364)
Q Consensus 194 ~r~~r~~a~NIIP~~-----tGaak~~-------~kVl---PeL~gki~~~avRVPv~~gs~~dl~~~l~k~~s~eei~~ 258 (364)
-.+++++|+|+||++ +|+++++ +||| |.| ++++||+||||++||++.++++|+++++.+++++
T Consensus 215 ~~fp~~iafNvIP~Ig~~~~~g~t~EE~K~~~EtrKILg~~~~l--~VsaTcVRVPV~~gHs~sv~ve~~~~vs~e~i~~ 292 (366)
T TIGR01745 215 DNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILGTSSTI--PVDGLCVRIGALRCHSQAFTIKLKKDVSLETIEE 292 (366)
T ss_pred ccCCCcccccccCcCCCccCCCCcHHHHHHHHHHHHHhCCCCCC--cEEEEEEecceeccEEEEEEEEECCCCCHHHHHH
Confidence 356889999999997 4766655 4566 444 6999999999999999999999999999999999
Q ss_pred HHHHcc
Q psy8544 259 KVKAAS 264 (364)
Q Consensus 259 ~l~~a~ 264 (364)
+|+++.
T Consensus 293 ~L~~~~ 298 (366)
T TIGR01745 293 IIRAHN 298 (366)
T ss_pred HHHhCC
Confidence 999853
No 26
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=100.00 E-value=1.2e-39 Score=321.74 Aligned_cols=233 Identities=22% Similarity=0.337 Sum_probs=192.7
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
||||+| +|.+|+.++|+|.+++++++.+.-+ . +-+..+..+.+.|+.+.+.. .++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~-------------a--------s~~~~g~~~~~~~~~~~~~~-~~~-- 56 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLL-------------A--------SDRSAGRKVTFKGKELEVNE-AKI-- 56 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEE-------------e--------ccccCCCeeeeCCeeEEEEe-CCh--
Confidence 699999 9999999999998876665433211 0 11234555666676555522 222
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCC-----CCCeEEcccCccccCC--CCCeEecCCchhhhH
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSK-----DAPMFVCGVNLDKYDP--SHSVVSNASCTTNCL 155 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~-----d~p~vV~gVN~~~~~~--~~~IISnaSCTTn~L 155 (364)
..| .++|+||+|+|.+.++++++.|+++|+ +||+.+++ |+|++|||||++.++. .++|||||+|+|+|+
T Consensus 57 ~~~--~~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C~~t~~ 132 (339)
T TIGR01296 57 ESF--EGIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNCSTIQM 132 (339)
T ss_pred HHh--cCCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCcHHHHH
Confidence 235 389999999999999999999999999 79988863 4899999999999975 356999999999999
Q ss_pred HhHHHHHhhhcCeeEEEEEeeeccccc------------hhhhcCCCccc-------ccccccccceeecCC-----CCh
Q psy8544 156 APLAKVIHDNFEILEGLMTTVHAVTAT------------QKTVDAPSKKM-------WRDGRGANQNIIPAS-----TGA 211 (364)
Q Consensus 156 ap~lk~L~d~fGI~~~~~TTvha~t~~------------q~~~D~~~~~d-------~r~~r~~a~NIIP~~-----tGa 211 (364)
+++|+||+++|+|+++.|||+|++||+ |+++++++..+ .+++|++++||||++ +|.
T Consensus 133 ~l~l~pL~~~~~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp~~~~~~~~~~ 212 (339)
T TIGR01296 133 VVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNAIPHIDDFNDDGY 212 (339)
T ss_pred HHHHHHHHHhcCccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccccCcCCCcccCCC
Confidence 999999999999999999999999997 44566655323 789999999999995 689
Q ss_pred HHHHHHHccCCC-------CceeeEEEeceeccceEEEEEEEeccCCCHHHHHHHHHHcc
Q psy8544 212 AKAVAKVIPDLE-------GKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAAS 264 (364)
Q Consensus 212 ak~~~kVlPeL~-------gki~~~avRVPv~~gs~~dl~~~l~k~~s~eei~~~l~~a~ 264 (364)
++++.|+.|||+ .+++++++|||+++||+.+++++++++++.+|++++|++++
T Consensus 213 ~~Ee~ki~~el~~i~~~~~~~v~~t~~rVPv~~G~~~~v~v~~~~~v~~~~i~~~l~~~~ 272 (339)
T TIGR01296 213 TKEETKMLFETRKIMGIPDFKVSATCVRVPVFTGHSESVNIEFEKEISPEDVRELLKNAP 272 (339)
T ss_pred CHHHHHHHHHHHHHhCCCCCcEEEEeEEccccccEEEEEEEEECCCCCHHHHHHHHhcCC
Confidence 999999998875 36999999999999999999999999999999999999664
No 27
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=3.2e-39 Score=317.94 Aligned_cols=229 Identities=24% Similarity=0.361 Sum_probs=193.3
Q ss_pred ceEEEEc-cChHHHHHHHHHhcC---CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecC
Q psy8544 3 YKIGING-FGRIGRLVLREALHR---NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKM 78 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~---~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~ 78 (364)
+||+|.| +|.+|+.++|+|.++ .++++++... +..+..+.++|..+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~------------------------~~~g~~l~~~g~~i~v~--- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASA------------------------RSAGKELSFKGKELKVE--- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEcc------------------------ccCCCeeeeCCceeEEe---
Confidence 6999999 999999999999985 4566665331 12244455666666653
Q ss_pred CCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCC-----CCCeEEcccCccccCCC--CCeEecCCch
Q psy8544 79 KPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSK-----DAPMFVCGVNLDKYDPS--HSVVSNASCT 151 (364)
Q Consensus 79 ~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~-----d~p~vV~gVN~~~~~~~--~~IISnaSCT 151 (364)
+++..+|. ++|+||+|+|.+.++++++.|+++|+ +||+.+++ |+|+++||||++.++.. ++|||||+|+
T Consensus 55 d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~C~ 130 (334)
T PRK14874 55 DLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPNCS 130 (334)
T ss_pred eCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECccHH
Confidence 44445674 89999999999999999999999999 89988764 47999999999999764 4799999999
Q ss_pred hhhHHhHHHHHhhhcCeeEEEEEeeecccc------------chhhhcCCC--cccccccccccceeecCC-----CChH
Q psy8544 152 TNCLAPLAKVIHDNFEILEGLMTTVHAVTA------------TQKTVDAPS--KKMWRDGRGANQNIIPAS-----TGAA 212 (364)
Q Consensus 152 Tn~Lap~lk~L~d~fGI~~~~~TTvha~t~------------~q~~~D~~~--~~d~r~~r~~a~NIIP~~-----tGaa 212 (364)
|+|++++|+||+++|+|+++.|||+|++|| +|.++|+++ .+++|++|++++|++|+. +|.+
T Consensus 131 ~t~~~l~l~pL~~~~~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh~ 210 (334)
T PRK14874 131 TIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHIDVFMDDGYT 210 (334)
T ss_pred HHHHHHHHHHHHHhcCceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcccCcCCccccCCCc
Confidence 999999999999999999999999999997 456777553 478899999999999997 7776
Q ss_pred HH-------HHHHc--cCCCCceeeEEEeceeccceEEEEEEEeccCCCHHHHHHHHHHcc
Q psy8544 213 KA-------VAKVI--PDLEGKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAAS 264 (364)
Q Consensus 213 k~-------~~kVl--PeL~gki~~~avRVPv~~gs~~dl~~~l~k~~s~eei~~~l~~a~ 264 (364)
++ +.+++ |++ +++++++|||+++||+.+++++++++++.+|++++|++++
T Consensus 211 ~eE~ki~~el~~il~~~~~--~v~~t~~rvPv~~G~~~ti~v~~~~~~~~~~v~~~l~~~~ 269 (334)
T PRK14874 211 KEEMKMVNETKKILGDPDL--KVSATCVRVPVFTGHSESVNIEFEEPISVEEAREILAEAP 269 (334)
T ss_pred HHHHHHHHHHHHHhCCCCC--eEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHcCC
Confidence 66 46676 877 5999999999999999999999999999999999999854
No 28
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-38 Score=311.90 Aligned_cols=233 Identities=18% Similarity=0.302 Sum_probs=191.1
Q ss_pred CceEEEEc-cChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCC
Q psy8544 2 AYKIGING-FGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMK 79 (364)
Q Consensus 2 ~irVaInG-~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~ 79 (364)
.+||||+| +|.+|+.++|+|+++ +|++ .++ +++ . +-++.|..+.+.|+.+.+. +.+
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v---~~l--------~~~--a--------S~~saGk~~~~~~~~l~v~-~~~ 62 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNI---AEV--------TLL--S--------SKRSAGKTVQFKGREIIIQ-EAK 62 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCc---ccE--------EEE--E--------CcccCCCCeeeCCcceEEE-eCC
Confidence 47999999 999999999999965 9996 222 222 1 1245677888888877764 334
Q ss_pred CCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCC-----CCCeEEcccCccccCCCCCeEecCCchhhh
Q psy8544 80 PEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSK-----DAPMFVCGVNLDKYDPSHSVVSNASCTTNC 154 (364)
Q Consensus 80 p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~-----d~p~vV~gVN~~~~~~~~~IISnaSCTTn~ 154 (364)
++. |. ++|+||+|+|...++++++.+.++|+ +||+++++ |+|+++||||.+.+...++||+||+|+|++
T Consensus 63 ~~~--~~--~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEvN~e~i~~~~~iIanPnC~tt~ 136 (347)
T PRK06728 63 INS--FE--GVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCSALQ 136 (347)
T ss_pred HHH--hc--CCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCcCHHHHhccCCEEECCCCHHHH
Confidence 443 43 79999999999999999999989998 89999975 699999999999987644799999999999
Q ss_pred HHhHHHHHhhhcCeeEEEEEeeeccccchh------------hhcCCCccccccc-------ccccceeecCC-----CC
Q psy8544 155 LAPLAKVIHDNFEILEGLMTTVHAVTATQK------------TVDAPSKKMWRDG-------RGANQNIIPAS-----TG 210 (364)
Q Consensus 155 Lap~lk~L~d~fGI~~~~~TTvha~t~~q~------------~~D~~~~~d~r~~-------r~~a~NIIP~~-----tG 210 (364)
++.+|+||+++|+|+++.++|||++||+++ ++++...+.-.++ ++++||+||++ +|
T Consensus 137 ~~laL~PL~~~~~i~~v~V~t~qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~~~~~~iafNviP~i~~~~~~g 216 (347)
T PRK06728 137 MVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTDND 216 (347)
T ss_pred HHHHHHHHHHcCCccEEEEEEeecccccchhhHHHHHHHHHHHhcCCCCccccccccccccCCceeccccCcCCccccCC
Confidence 999999999999999999999999999853 2333211223456 89999999997 56
Q ss_pred hHHHH-------HHHc--cCCCCceeeEEEeceeccceEEEEEEEeccCCCHHHHHHHHHHcc
Q psy8544 211 AAKAV-------AKVI--PDLEGKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAAS 264 (364)
Q Consensus 211 aak~~-------~kVl--PeL~gki~~~avRVPv~~gs~~dl~~~l~k~~s~eei~~~l~~a~ 264 (364)
+++++ +||| |+| ++++||+||||++||++.++++|+++++.++++++|++++
T Consensus 217 ~t~EE~K~~~E~~KIL~~~~l--~VsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l~~~~ 277 (347)
T PRK06728 217 FTFEEVKMIQETKKILEDPNL--KMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAP 277 (347)
T ss_pred ccHHHHHHHHHHHHHhCCCCC--cEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHHcCC
Confidence 55544 5677 555 6999999999999999999999999999999999999875
No 29
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=1.4e-37 Score=308.32 Aligned_cols=236 Identities=18% Similarity=0.210 Sum_probs=185.8
Q ss_pred CceEEEEc-cChHHHHHHH-HHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCC
Q psy8544 2 AYKIGING-FGRIGRLVLR-EALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMK 79 (364)
Q Consensus 2 ~irVaInG-~G~IGr~vlr-~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~ 79 (364)
++||||+| +|.+|+.++| +|++++|++ .++ +++ .| -++.+..+.++|+...++...+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~---~~l--------~~~--ss--------~~sg~~~~~f~g~~~~v~~~~~ 59 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDL---IEP--------VFF--ST--------SQAGGAAPSFGGKEGTLQDAFD 59 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCc---CcE--------EEe--cc--------hhhCCcccccCCCcceEEecCC
Confidence 17999999 9999999998 666669985 222 111 11 1223344567787766654333
Q ss_pred CCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCC-----CCCeEEcccCccccCCC--C--CeEecCCc
Q psy8544 80 PEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSK-----DAPMFVCGVNLDKYDPS--H--SVVSNASC 150 (364)
Q Consensus 80 p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~-----d~p~vV~gVN~~~~~~~--~--~IISnaSC 150 (364)
++. |. ++|+||+|+|...++++++...++|++.+||+++++ |+|++|||||++.+... + ++|+||+|
T Consensus 60 ~~~--~~--~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIanPnC 135 (369)
T PRK06598 60 IDA--LK--KLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFVGGNC 135 (369)
T ss_pred hhH--hc--CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEEcCCh
Confidence 333 43 799999999999999999999899965589999985 69999999999988642 2 48999999
Q ss_pred hhhhHHhHHHHHhhhcCeeEEEEEeeeccccchhh------------hc-------------------------CCCccc
Q psy8544 151 TTNCLAPLAKVIHDNFEILEGLMTTVHAVTATQKT------------VD-------------------------APSKKM 193 (364)
Q Consensus 151 TTn~Lap~lk~L~d~fGI~~~~~TTvha~t~~q~~------------~D-------------------------~~~~~d 193 (364)
+|++++.+|+||++.++|+++.++|||++||+++- ++ +...+.
T Consensus 136 ~tt~~~laL~PL~~~~~i~~viVst~qavSGAG~~g~~eL~~qt~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (369)
T PRK06598 136 TVSLMLMALGGLFKNDLVEWVSVMTYQAASGAGARNMRELLTQMGALHGAVADELADPASAILDIDRKVTELMRSGDLPT 215 (369)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEEeeecccccCHHHHHHHHHHHHHHhhhccccccccchhhhhhhhhhhhhcccCCCCc
Confidence 99999999999999999999999999999998642 11 111122
Q ss_pred ccccccccceeecCC-----CChHHHH-------HHHc----cCCCCceeeEEEeceeccceEEEEEEEeccCCCHHHHH
Q psy8544 194 WRDGRGANQNIIPAS-----TGAAKAV-------AKVI----PDLEGKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIK 257 (364)
Q Consensus 194 ~r~~r~~a~NIIP~~-----tGaak~~-------~kVl----PeL~gki~~~avRVPv~~gs~~dl~~~l~k~~s~eei~ 257 (364)
-.+++++++|+||++ +|+++++ +||| |+| ++++||+||||++||++.++++|+++++.++++
T Consensus 216 ~~f~~~iafN~iP~I~~~~~~g~t~EE~K~~~EtrKIL~~~~~~l--~vs~tcVRVPV~~gHs~sv~ve~~~~~~~~~i~ 293 (369)
T PRK06598 216 DNFGVPLAGSLIPWIDKDLGNGQSREEWKGQAETNKILGLTKNPI--PVDGLCVRVGAMRCHSQALTIKLKKDVPLAEIE 293 (369)
T ss_pred ccCCCcccccccCcCCCcccCCchHHHHHHHHHHHHHhCCCCCCC--eEEEEEEEcceeccEEEEEEEEECCCCCHHHHH
Confidence 246789999999997 5776655 4566 444 699999999999999999999999999999999
Q ss_pred HHHHHcc
Q psy8544 258 AKVKAAS 264 (364)
Q Consensus 258 ~~l~~a~ 264 (364)
++|+++.
T Consensus 294 ~~L~~~~ 300 (369)
T PRK06598 294 EILAAHN 300 (369)
T ss_pred HHHHhcC
Confidence 9999853
No 30
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=6e-33 Score=273.22 Aligned_cols=235 Identities=19% Similarity=0.232 Sum_probs=186.0
Q ss_pred CceEEEEc-cChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCC
Q psy8544 2 AYKIGING-FGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKP 80 (364)
Q Consensus 2 ~irVaInG-~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p 80 (364)
.+||||+| +|.+|+.++|+|.++++++.-|.- + . +-++.|..+.++|+.+.+. ++
T Consensus 4 ~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~-----------l--a--------S~~saG~~~~~~~~~~~v~---~~ 59 (336)
T PRK08040 4 GWNIALLGATGAVGEALLELLAERQFPVGELYA-----------L--A--------SEESAGETLRFGGKSVTVQ---DA 59 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhcCCCCceEEEE-----------E--E--------ccCcCCceEEECCcceEEE---eC
Confidence 58999999 999999999999996444422211 1 1 1134577777888776663 46
Q ss_pred CCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCC-----CCCeEEcccCccccCC--CCCeEecCCchhh
Q psy8544 81 EEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSK-----DAPMFVCGVNLDKYDP--SHSVVSNASCTTN 153 (364)
Q Consensus 81 ~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~-----d~p~vV~gVN~~~~~~--~~~IISnaSCTTn 153 (364)
+.++|. ++|+||+|++...++++++...++|+ +||+.+++ |+|+++||||.+.++. ..+||+||+|+|+
T Consensus 60 ~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~~~~iIAnPgC~~t 135 (336)
T PRK08040 60 AEFDWS--QAQLAFFVAGREASAAYAEEATNAGC--LVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNIIAVADSLTS 135 (336)
T ss_pred chhhcc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECChHhcCCCCCceEccccCHHHHhhhccCCEEECCCHHHH
Confidence 667775 79999999999999999999989988 79998874 5899999999965543 4689999999999
Q ss_pred hHHhHHHHHhhhcCeeEEEEEeeeccccchh------------hhcCCCcccccccccccceeecCCCC---hH------
Q psy8544 154 CLAPLAKVIHDNFEILEGLMTTVHAVTATQK------------TVDAPSKKMWRDGRGANQNIIPASTG---AA------ 212 (364)
Q Consensus 154 ~Lap~lk~L~d~fGI~~~~~TTvha~t~~q~------------~~D~~~~~d~r~~r~~a~NIIP~~tG---aa------ 212 (364)
+++..|+||+++++|+++.|+|+|++||+++ +++|.+.+...+++++++|++|++.+ ..
T Consensus 136 ~~~laL~PL~~~~~i~~viV~t~qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~~pyi~~~~g~~~~erh~ 215 (336)
T PRK08040 136 QLLTAIKPLIDQAGLSRLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNMLPLLPDSEGSVREERRL 215 (336)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeeccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCceeeccCCcCCcchHhhhh
Confidence 9999999999999999999999999999864 23332212246777899999999432 22
Q ss_pred -HHHHHHccCCCCceeeEEEeceeccceEEEEEEEeccCCCHHHHHHHHHHcc
Q psy8544 213 -KAVAKVIPDLEGKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAAS 264 (364)
Q Consensus 213 -k~~~kVlPeL~gki~~~avRVPv~~gs~~dl~~~l~k~~s~eei~~~l~~a~ 264 (364)
.+++|+|..-+.+++.|++|||+++||+..++++++++++.++++++|++++
T Consensus 216 ~~Ei~kiL~~~~~~vs~t~~~vPv~rG~~~tv~v~~~~~v~~~~i~~~l~~~p 268 (336)
T PRK08040 216 VDQVRKILQDEGLPISVSCVQSPVFYGHAQMVHFEALRPLAAEEARDALEQGE 268 (336)
T ss_pred HHHHHHHhCCCCCeEEEEeEEecchhcEEEEEEEEECCCCCHHHHHHHHhcCC
Confidence 2345555211224999999999999999999999999999999999999854
No 31
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=3.4e-32 Score=268.15 Aligned_cols=235 Identities=19% Similarity=0.254 Sum_probs=182.6
Q ss_pred CceEEEEc-cChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCC
Q psy8544 2 AYKIGING-FGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKP 80 (364)
Q Consensus 2 ~irVaInG-~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p 80 (364)
++||||.| +|.+|+.++|+|.+++++++.+.-+ . +.+..|..+.+.|+.+.+. ++
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-------------~--------s~~~aG~~l~~~~~~l~~~---~~ 59 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLL-------------A--------SSESAGHSVPFAGKNLRVR---EV 59 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-------------E--------CcccCCCeeccCCcceEEe---eC
Confidence 37999999 9999999999999764444332211 0 0122355566666555552 23
Q ss_pred CCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCC----CCCeEEcccCccccCC--CCCeEecCCchhhh
Q psy8544 81 EEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSK----DAPMFVCGVNLDKYDP--SHSVVSNASCTTNC 154 (364)
Q Consensus 81 ~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~----d~p~vV~gVN~~~~~~--~~~IISnaSCTTn~ 154 (364)
+..+|. ++|+||.|++...+.++++..+++|+ +||+.+++ |+|+++||||.+.++. ..+||+||+|+|++
T Consensus 60 ~~~~~~--~vD~vFla~p~~~s~~~v~~~~~~G~--~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~~~~iIAnPgC~~t~ 135 (336)
T PRK05671 60 DSFDFS--QVQLAFFAAGAAVSRSFAEKARAAGC--SVIDLSGALPSAQAPNVVPEVNAERLASLAAPFLVSSPSASAVA 135 (336)
T ss_pred ChHHhc--CCCEEEEcCCHHHHHHHHHHHHHCCC--eEEECchhhcCCCCCEEecccCHHHHccccCCCEEECCCcHHHH
Confidence 333453 79999999999999999999989988 78988875 6999999999998875 26899999999999
Q ss_pred HHhHHHHHhhhcCeeEEEEEeeeccccchhh-h-----------cCCCcccccccccccceeecCCC-----ChHHHHHH
Q psy8544 155 LAPLAKVIHDNFEILEGLMTTVHAVTATQKT-V-----------DAPSKKMWRDGRGANQNIIPAST-----GAAKAVAK 217 (364)
Q Consensus 155 Lap~lk~L~d~fGI~~~~~TTvha~t~~q~~-~-----------D~~~~~d~r~~r~~a~NIIP~~t-----Gaak~~~k 217 (364)
++..|+||++.|+++++.++|+|++||+++- . ++.....-.++++++||++|+.. |.++++.|
T Consensus 136 ~~laL~PL~~~~~~~~v~v~t~~~vSGaG~~~~~~L~~~~~~~~n~~~y~~~~~~~~iafn~~P~ig~~~~~gh~~eE~r 215 (336)
T PRK05671 136 LAVALAPLKGLLDIQRVQVTACLAVSSLGREGVSELARQTAELLNARPLEPRFFDRQVAFNLLAQVGAPDAQGHTALERR 215 (336)
T ss_pred HHHHHHHHHHhcCCCEEEEEEeecCcccCcccchHHHHHHHHHhCCCCccccccccccccccccccCccccCCccHHHHH
Confidence 9999999999999999999999999998542 1 11111223578899999999874 66555554
Q ss_pred HccCC-------CCceeeEEEeceeccceEEEEEEEeccCCCHHHHHHHHHHcc
Q psy8544 218 VIPDL-------EGKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAAS 264 (364)
Q Consensus 218 VlPeL-------~gki~~~avRVPv~~gs~~dl~~~l~k~~s~eei~~~l~~a~ 264 (364)
..||+ +.+++.|++|||+++||+..++++++++++.+|+++++++++
T Consensus 216 ~~~Ei~kiL~~~~~~v~~t~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~l~~~~ 269 (336)
T PRK05671 216 LVAELRQLLGLPELKISVTCIQVPVFFGDSLSVALQSAAPVDLAAVNAALEAAP 269 (336)
T ss_pred HHHHHHHHhCCCCCcEEEEeEEechhhhEeeEEEEEECCCCCHHHHHHHHhCCC
Confidence 44432 335999999999999999999999999999999999999654
No 32
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=99.97 E-value=6.6e-31 Score=259.86 Aligned_cols=233 Identities=16% Similarity=0.268 Sum_probs=181.0
Q ss_pred CceEEEEc-cChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCC
Q psy8544 2 AYKIGING-FGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKP 80 (364)
Q Consensus 2 ~irVaInG-~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p 80 (364)
++||+|.| +|.+|+.++|+|.+++++.+.+.-+ . +.+..|..+.++|+.+.+. ..++
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~l-------------a--------s~rsaGk~~~~~~~~~~v~-~~~~ 64 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKML-------------A--------SARSAGKKVTFEGRDYTVE-ELTE 64 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEE-------------E--------ccCCCCCeeeecCceeEEE-eCCH
Confidence 57999999 9999999999999865444322211 1 1133455566666555542 2233
Q ss_pred CCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCC-----CCCeEEcccCccccCCC------CCeEecCC
Q psy8544 81 EEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSK-----DAPMFVCGVNLDKYDPS------HSVVSNAS 149 (364)
Q Consensus 81 ~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~-----d~p~vV~gVN~~~~~~~------~~IISnaS 149 (364)
+ .|. ++|+||+|+|...++++++...++|+ +||+++++ ++|+++||+|.+.++.. .+||+||+
T Consensus 65 ~--~~~--~~D~vf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~iIanPg 138 (344)
T PLN02383 65 D--SFD--GVDIALFSAGGSISKKFGPIAVDKGA--VVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGALIANPN 138 (344)
T ss_pred H--HHc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcEEECCC
Confidence 3 343 79999999999999999999888888 88998874 58999999999988752 34999999
Q ss_pred chhhhHHhHHHHHhhhcCeeEEEEEeeeccccchhh-hc-----------CCCcccccccccccceeecCCC-----ChH
Q psy8544 150 CTTNCLAPLAKVIHDNFEILEGLMTTVHAVTATQKT-VD-----------APSKKMWRDGRGANQNIIPAST-----GAA 212 (364)
Q Consensus 150 CTTn~Lap~lk~L~d~fGI~~~~~TTvha~t~~q~~-~D-----------~~~~~d~r~~r~~a~NIIP~~t-----Gaa 212 (364)
|+|++++..|+||+++++|+++.++|+|++||+++- ++ +......++....++|++|+.. |++
T Consensus 139 C~~t~~~laL~PL~~~~~i~~vvv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~~~~~ayn~~ph~~~~~~~g~~ 218 (344)
T PLN02383 139 CSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNIFAQQYAFNLFSHNAPMQENGYN 218 (344)
T ss_pred cHHHHHHHHHHHHHHcCCeeEEEEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhccCCccccccccccCccccCCCC
Confidence 999999999999999999999999999999998642 22 1111233667889999999963 444
Q ss_pred HHH-------HHHc--cCCCCceeeEEEeceeccceEEEEEEEeccCCCHHHHHHHHHHcc
Q psy8544 213 KAV-------AKVI--PDLEGKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAAS 264 (364)
Q Consensus 213 k~~-------~kVl--PeL~gki~~~avRVPv~~gs~~dl~~~l~k~~s~eei~~~l~~a~ 264 (364)
+++ +|++ |++ +++.|++|||+++||+..++++++++++.++++++|++++
T Consensus 219 ~~E~~~~~e~~kil~~~~~--~v~~t~~~vPv~rG~~~sv~v~~~~~v~~~~~~~~l~~~p 277 (344)
T PLN02383 219 EEEMKLVKETRKIWNDDDV--KVTATCIRVPVMRAHAESINLQFEKPLDEATAREILASAP 277 (344)
T ss_pred hHHHHHHHHHHHHhCCCCC--eEEEEeEecCccccEEEEEEEEECCCCCHHHHHHHHhcCC
Confidence 333 3555 333 5999999999999999999999999999999999999844
No 33
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=99.97 E-value=4.3e-30 Score=253.82 Aligned_cols=254 Identities=17% Similarity=0.215 Sum_probs=187.2
Q ss_pred ceEEEEc-cChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCC
Q psy8544 3 YKIGING-FGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKP 80 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p 80 (364)
+||||+| +|.+|+.++|+|.++ +++|+++.+.. . .....+ ...|..+ ...+ +.-.-..+.+ +..++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~--~-~~g~~~--~~~~~~~----~~~~--~~~~~~~~~~-~~~~~ 68 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASP--R-SAGKRY--GEAVKWI----EPGD--MPEYVRDLPI-VEPEP 68 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEECh--h-hcCCcc--hhhcccc----ccCC--CccccceeEE-EeCCH
Confidence 5999999 899999999999988 79999885531 1 000000 0000000 0000 0000012222 22233
Q ss_pred CCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCC-----CCCeEEcccCccccCC---------CCCeEe
Q psy8544 81 EEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSK-----DAPMFVCGVNLDKYDP---------SHSVVS 146 (364)
Q Consensus 81 ~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~-----d~p~vV~gVN~~~~~~---------~~~IIS 146 (364)
+ .| .++|+||+|++...+.+.++...++|+ .||+.++. ++|+++|++|++.|.. ..+||+
T Consensus 69 ~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~--~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~iVa 142 (341)
T TIGR00978 69 V--AS--KDVDIVFSALPSEVAEEVEPKLAEAGK--PVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFIVT 142 (341)
T ss_pred H--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCC--EEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccEEe
Confidence 3 23 379999999999999999988888888 45655543 5899999999987652 125999
Q ss_pred cCCchhhhHHhHHHHHhhhcCeeEEEEEeeeccccchhhhcCCCcccccccccccceeecCCCChH----HHHHHHccCC
Q psy8544 147 NASCTTNCLAPLAKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAA----KAVAKVIPDL 222 (364)
Q Consensus 147 naSCTTn~Lap~lk~L~d~fGI~~~~~TTvha~t~~q~~~D~~~~~d~r~~r~~a~NIIP~~tGaa----k~~~kVlPeL 222 (364)
||+|+|+|++++|+||+++++|+++.|||+|++||+|+... + .+.+++|++|+..+.. .++.++|+.+
T Consensus 143 nPgC~~t~~~lal~pL~~~~~i~~v~v~t~~gvSgaG~~~~-----~---~~~~~~Ni~py~~~~ehrh~~Ei~~il~~~ 214 (341)
T TIGR00978 143 NPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAGYPGV-----P---SMDILDNIIPHIGGEEEKIERETRKILGKL 214 (341)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEccCCCCCCCC-----c---cchhhCCeEecCcHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999985421 1 2358999999997762 4678888876
Q ss_pred CC--------ceeeEEEeceeccceEEEEEEEeccCCCHHHHHHHHHHccCCCCCccccccCCceEee
Q psy8544 223 EG--------KLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSS 282 (364)
Q Consensus 223 ~g--------ki~~~avRVPv~~gs~~dl~~~l~k~~s~eei~~~l~~a~~~~lkgil~~~e~~~VS~ 282 (364)
.+ +++.+++|||+++||+.+++++++++++.+|++++++++.+.++...+.-+.+|+|-.
T Consensus 215 ~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~v~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~fv~~ 282 (341)
T TIGR00978 215 ENGKIEPAPFSVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALKSFRGLPQKLGLPSAPEKPIIV 282 (341)
T ss_pred ccCcccCCCceEEEEEEEcCccccEEEEEEEEeCCCCCHHHHHHHHHhCcCccccccCCCCCCCcEEE
Confidence 43 5999999999999999999999999999999999999988765544445566666644
No 34
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.97 E-value=1e-29 Score=251.79 Aligned_cols=238 Identities=21% Similarity=0.263 Sum_probs=174.7
Q ss_pred CCceEEEEc-cChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecC
Q psy8544 1 MAYKIGING-FGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKM 78 (364)
Q Consensus 1 m~irVaInG-~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~ 78 (364)
|++||+|+| +|.+|+.++|+|.++ +++++++... .+..-.. +.+.|+ +... +.+.-.-+.+.+. ..
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s---~~~~G~~--~~~~~~-~~~~-----~~~~~~~~~~~v~-~~ 69 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAAS---ERSAGKT--YGEAVR-WQLD-----GPIPEEVADMEVV-ST 69 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcC---hhhcCCc--cccccc-cccc-----ccccccccceEEE-eC
Confidence 468999999 999999999999988 8899988221 1110000 011110 0000 0000000123332 23
Q ss_pred CCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCC-----CCCeEEcccCccccCC----------CCC
Q psy8544 79 KPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSK-----DAPMFVCGVNLDKYDP----------SHS 143 (364)
Q Consensus 79 ~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~-----d~p~vV~gVN~~~~~~----------~~~ 143 (364)
+++. |. ++|+||+|++...+.+.++...++|++ +|+.+++ +.|++++++|++.|.. ..+
T Consensus 70 ~~~~--~~--~~DvVf~a~p~~~s~~~~~~~~~~G~~--vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~~~~ 143 (349)
T PRK08664 70 DPEA--VD--DVDIVFSALPSDVAGEVEEEFAKAGKP--VFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWDGF 143 (349)
T ss_pred CHHH--hc--CCCEEEEeCChhHHHHHHHHHHHCCCE--EEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccCCce
Confidence 4443 32 799999999999888888888788884 4555542 4789999999987632 126
Q ss_pred eEecCCchhhhHHhHHHHHhhhcCeeEEEEEeeeccccchhhhcCCCcccccccccccceeecCCCCh--------HHHH
Q psy8544 144 VVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGA--------AKAV 215 (364)
Q Consensus 144 IISnaSCTTn~Lap~lk~L~d~fGI~~~~~TTvha~t~~q~~~D~~~~~d~r~~r~~a~NIIP~~tGa--------ak~~ 215 (364)
|||||+|+|+|++++|+||++ |||+++.|||+|++||+++.. +..+.+++|++|+..+. .+.+
T Consensus 144 iVa~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG~~~--------~~~~~~~~N~~p~~~~~ehrh~~Ei~~~l 214 (349)
T PRK08664 144 IVTNPNCSTIGLVLALKPLMD-FGIERVHVTTMQAISGAGYPG--------VPSMDIVDNVIPYIGGEEEKIEKETLKIL 214 (349)
T ss_pred EEEccCHHHHHHHHHHHHHHH-CCCcEEEEEEEeccccCCccc--------chhhhhhcCcccccCchhhhhhHHHHHHh
Confidence 999999999999999999999 999999999999999997432 22446899999999875 2333
Q ss_pred HHH----ccCCCCceeeEEEeceeccceEEEEEEEeccCCCHHHHHHHHHHccC
Q psy8544 216 AKV----IPDLEGKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAASQ 265 (364)
Q Consensus 216 ~kV----lPeL~gki~~~avRVPv~~gs~~dl~~~l~k~~s~eei~~~l~~a~~ 265 (364)
+++ +|.++.+++.+++|||+++||+.+++++++++++.+|++++|+++..
T Consensus 215 ~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~~~l~~~~~~~~v~~~~~~~~~ 268 (349)
T PRK08664 215 GKFEGGKIVPADFPISATCHRVPVIDGHTEAVFVKFKEDVDPEEIREALESFKG 268 (349)
T ss_pred hhcccccccCCCceEEEEeEEccccccEEEEEEEEeCCCCCHHHHHHHHHhccC
Confidence 333 45567889999999999999999999999999999999999999775
No 35
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=99.94 E-value=8.4e-26 Score=223.54 Aligned_cols=295 Identities=15% Similarity=0.161 Sum_probs=194.7
Q ss_pred CCceEEEEc-cChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCE-EEEEEec
Q psy8544 1 MAYKIGING-FGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGK-KIAVFQK 77 (364)
Q Consensus 1 m~irVaInG-~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk-~I~v~~~ 77 (364)
|++||||.| +|.+|+.+++.|.++ +++++++.+.. ... ..+ ...|+.+. +. ...+ ++
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g---~~l--~~~~~~~~-------------~~~~~~~-~~ 60 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAG---KPL--SDVHPHLR-------------GLVDLVL-EP 60 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccC---cch--HHhCcccc-------------cccCcee-ec
Confidence 678999999 799999999999988 89999887631 100 000 00111110 10 0111 11
Q ss_pred CCCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCC------C------------------CCeEEccc
Q psy8544 78 MKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSK------D------------------APMFVCGV 133 (364)
Q Consensus 78 ~~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~------d------------------~p~vV~gV 133 (364)
.+...| .++|+||.|++.....+.++..+++|+ +||+++++ | +|+.+||+
T Consensus 61 --~~~~~~--~~vD~Vf~alP~~~~~~~v~~a~~aG~--~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe~ 134 (343)
T PRK00436 61 --LDPEIL--AGADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPEL 134 (343)
T ss_pred --CCHHHh--cCCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCcc
Confidence 222233 369999999999999999999888887 89998864 3 68999999
Q ss_pred CccccCCCCCeEecCCchhhhHHhHHHHHhhhcCee--EEEEEeeeccccchhh-hcCCCcccccccccccceeecCCCC
Q psy8544 134 NLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEIL--EGLMTTVHAVTATQKT-VDAPSKKMWRDGRGANQNIIPASTG 210 (364)
Q Consensus 134 N~~~~~~~~~IISnaSCTTn~Lap~lk~L~d~fGI~--~~~~TTvha~t~~q~~-~D~~~~~d~r~~r~~a~NIIP~~tG 210 (364)
|.+.+.. .+||+||+|+|++++.+|+||++..+|+ +++++|++++||+++- .+..+. ..+.+.-.++|++|+..
T Consensus 135 ~~~~i~~-~~iIanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~~~-~~~~~~~~~y~~~~h~h- 211 (343)
T PRK00436 135 NREEIKG-ARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASEGTLF-SEVNENLRPYKVGGHRH- 211 (343)
T ss_pred CHHHhcC-CCEEECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEecccCCCCccccccc-hhhcCCeeecccCCCCC-
Confidence 9998874 5899999999999999999999998898 8999999999999763 332221 11222223666666642
Q ss_pred hHHHHHHHccCCCCceeeEEEeceeccceEEEEEEEeccCCCHHHHHHHHHHccCCCCCccccccCCceEe-ecCCCCCc
Q psy8544 211 AAKAVAKVIPDLEGKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVS-SDFNGEVC 289 (364)
Q Consensus 211 aak~~~kVlPeL~gki~~~avRVPv~~gs~~dl~~~l~k~~s~eei~~~l~~a~~~~lkgil~~~e~~~VS-~df~~~~~ 289 (364)
..++.+.+-.+.++++.+++|||+++||++.++++++++++.+|++++++++=++ -++|--+.+++... .+-.|..+
T Consensus 212 -~~Ei~~~l~~~~~~v~~t~~~vPv~~G~~~tv~v~~~~~~~~~~~~~~~~~~y~~-~~~v~v~~~~~~p~~~~v~g~~~ 289 (343)
T PRK00436 212 -TPEIEQELSALAGEVSFTPHLVPMTRGILATIYARLKDPVTAEDVRAAYEEFYAD-EPFVRVLPEGQYPETKSVRGSNF 289 (343)
T ss_pred -HHHHHHHHHHhcCCEEEEeEEecccCcEEEEEEEEeCCCCCHHHHHHHHHHHhCC-CCcEEEeCCCCCcchhhhCCCCe
Confidence 3344444433322799999999999999999999999999999999999863321 12222111211100 12233332
Q ss_pred eeEEecCCccee--cCceEEEEEEecCC-CcchhhhhHHHHHHhc
Q psy8544 290 SSVFDAKAGIAL--NKNFVKLVTWYDNE-YGYSCRVLDLIQYMKS 331 (364)
Q Consensus 290 s~i~d~~~~~~~--~~~~~kl~~WyDNE-~gys~r~~dl~~~~~~ 331 (364)
-.| + +.. .++.+.+++--||= .|=|-.-+-.++.|-.
T Consensus 290 ~~i---g--~~~d~~~~~~~~~~~~DNL~kGAA~~Avq~~nl~~g 329 (343)
T PRK00436 290 CDI---G--FAVDERTGRLVVVSAIDNLVKGAAGQAVQNMNIMFG 329 (343)
T ss_pred EEE---E--EEEcCCCCEEEEEEEecccchhHHHHHHHHHHHHcC
Confidence 222 1 112 24557777778884 3444454545555544
No 36
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=99.92 E-value=1.8e-24 Score=214.23 Aligned_cols=292 Identities=15% Similarity=0.159 Sum_probs=189.2
Q ss_pred ceEEEEc-cChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCE-EEEEEecCC
Q psy8544 3 YKIGING-FGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGK-KIAVFQKMK 79 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk-~I~v~~~~~ 79 (364)
+||||.| +|.+|+.++|.|.++ +++++++-+...... ..+ ...|+.+. +. ...+ ...+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sag---k~~--~~~~~~l~-------------~~~~~~~-~~~~ 61 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAG---KPV--SEVHPHLR-------------GLVDLNL-EPID 61 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcC---CCh--HHhCcccc-------------ccCCcee-ecCC
Confidence 5999999 799999999999988 899987744310000 000 11111110 10 1112 1122
Q ss_pred CCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCC------------------------CCCeEEcccCc
Q psy8544 80 PEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSK------------------------DAPMFVCGVNL 135 (364)
Q Consensus 80 p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~------------------------d~p~vV~gVN~ 135 (364)
+++ |.+ ++|+||.|++...+++.++..+++|+ +||+.+++ +.|..+||+|.
T Consensus 62 ~~~--~~~-~~DvVf~alP~~~s~~~~~~~~~~G~--~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n~ 136 (346)
T TIGR01850 62 EEE--IAE-DADVVFLALPHGVSAELAPELLAAGV--KVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELHR 136 (346)
T ss_pred HHH--hhc-CCCEEEECCCchHHHHHHHHHHhCCC--EEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccCH
Confidence 222 322 69999999999999999999888886 78888763 27899999999
Q ss_pred cccCCCCCeEecCCchhhhHHhHHHHHhhhcCee--EEEEEeeeccccchhh-hcCCCcccccccccccceeecCCCCh-
Q psy8544 136 DKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEIL--EGLMTTVHAVTATQKT-VDAPSKKMWRDGRGANQNIIPASTGA- 211 (364)
Q Consensus 136 ~~~~~~~~IISnaSCTTn~Lap~lk~L~d~fGI~--~~~~TTvha~t~~q~~-~D~~~~~d~r~~r~~a~NIIP~~tGa- 211 (364)
+.+.. .+||+||+|+++++...|+||++++.|+ ++.++|++++||+++- .+..+. ..+ ..|+.|+.-+.
T Consensus 137 ~~i~~-~~iianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG~~~~~~~~~-~~~-----~~~~~~y~~~~h 209 (346)
T TIGR01850 137 EEIKG-ARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAGRKASPANHF-PEV-----NENLRPYKVTGH 209 (346)
T ss_pred HHhCC-CcEEEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccCcCccccccc-hhh-----cCCeeeeccCCc
Confidence 98864 6799999999999999999999998887 7999999999999863 222221 111 24555543221
Q ss_pred --HH----HHHHHccCCCCceeeEEEeceeccceEEEEEEEeccCCCHHHHHHHHHHccCC-CCCccccccCCceEeecC
Q psy8544 212 --AK----AVAKVIPDLEGKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAASQG-PMKGILGYTEDEVVSSDF 284 (364)
Q Consensus 212 --ak----~~~kVlPeL~gki~~~avRVPv~~gs~~dl~~~l~k~~s~eei~~~l~~a~~~-~lkgil~~~e~~~VS~df 284 (364)
.. ++++++- -+.+++.|++|||+++||+..++++++++++.+|++++++++-++ ++--++.-.+-|-. .+-
T Consensus 210 ~h~~Ei~~~l~~~~~-~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~~~~~y~~~~~V~v~~~~~~p~~-~~v 287 (346)
T TIGR01850 210 RHTPEIEQELGRLAG-GKVKVSFTPHLVPMTRGILATIYAKLKDGLTEEDLRAAYEEFYADEPFVRVLPEGEYPST-KAV 287 (346)
T ss_pred CcHHHHHHHHHHhcC-CCCCEEEEeEEeeccccEEEEEEEecCCCCCHHHHHHHHHHHhCCCCcEEEeCCCCCcCh-HHh
Confidence 22 3334431 123599999999999999999999999999999999999865432 22212211001111 122
Q ss_pred CCCCceeEEecCCcceec--CceEEEEEEecCCC-cchhhhhHHHHHHhcc
Q psy8544 285 NGEVCSSVFDAKAGIALN--KNFVKLVTWYDNEY-GYSCRVLDLIQYMKSK 332 (364)
Q Consensus 285 ~~~~~s~i~d~~~~~~~~--~~~~kl~~WyDNE~-gys~r~~dl~~~~~~~ 332 (364)
.|..+-.| + ...+ .+.+.+++=-||=. |=|-+-|-.++.|...
T Consensus 288 ~g~n~~~i---g--~~~d~~~~~l~~~~~~DNL~KGAAg~AVq~~n~~~g~ 333 (346)
T TIGR01850 288 IGSNFCDI---G--FAVDERTGRVVVVSAIDNLVKGAAGQAVQNMNLMFGF 333 (346)
T ss_pred cCCCeEEE---E--EEEcCCCCEEEEEEEeechhhhHHHHHHHHHHHHcCC
Confidence 33333222 1 2221 34466666688843 4555555566666543
No 37
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=99.92 E-value=9.5e-24 Score=211.46 Aligned_cols=243 Identities=11% Similarity=0.064 Sum_probs=170.2
Q ss_pred CCceEEEEc-cChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecC
Q psy8544 1 MAYKIGING-FGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKM 78 (364)
Q Consensus 1 m~irVaInG-~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~ 78 (364)
|++||||.| +|.+|+.++|+|.+| +++|+.+..- . + -|+- +....-. +.+....-++..
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~---~----------s-aG~~---i~~~~~~--l~~~~~~~~~~~ 97 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD---R----------K-AGQS---FGSVFPH--LITQDLPNLVAV 97 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh---h----------h-cCCC---chhhCcc--ccCccccceecC
Confidence 467999999 999999999999999 9999877542 0 0 0110 0000000 111111111111
Q ss_pred CCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCC-----C--------CCeEEcccCccc-cC-----
Q psy8544 79 KPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSK-----D--------APMFVCGVNLDK-YD----- 139 (364)
Q Consensus 79 ~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~-----d--------~p~vV~gVN~~~-~~----- 139 (364)
++ .+| .++|+||.|+|...+++.++. +++|+ +||+.+++ + .|+.+|++|.+. |.
T Consensus 98 ~~--~~~--~~~DvVf~Alp~~~s~~i~~~-~~~g~--~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE~~ 170 (381)
T PLN02968 98 KD--ADF--SDVDAVFCCLPHGTTQEIIKA-LPKDL--KIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTELQ 170 (381)
T ss_pred CH--HHh--cCCCEEEEcCCHHHHHHHHHH-HhCCC--EEEEcCchhccCCcccchhccCCCCCCcccchhhhcccchhC
Confidence 22 224 279999999999889988887 46775 78888864 3 688999999874 32
Q ss_pred ----CCCCeEecCCchhhhHHhHHHHHhhhcCe--eEEEEEeeeccccchhhh-cCCCcccc-cccccccceeecCCCCh
Q psy8544 140 ----PSHSVVSNASCTTNCLAPLAKVIHDNFEI--LEGLMTTVHAVTATQKTV-DAPSKKMW-RDGRGANQNIIPASTGA 211 (364)
Q Consensus 140 ----~~~~IISnaSCTTn~Lap~lk~L~d~fGI--~~~~~TTvha~t~~q~~~-D~~~~~d~-r~~r~~a~NIIP~~tGa 211 (364)
...+||+||+|.|+++...|+||+++++| +++.++|++++||+++.. +..+.... ..-|+.++|..|+..-.
T Consensus 171 r~~i~~~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~~~~~~l~~e~~~n~~~y~~~~h~h~pEi 250 (381)
T PLN02968 171 REEIKSARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGAKEANLYTEIAEGIGAYGVTRHRHVPEI 250 (381)
T ss_pred HHHhcCCCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeeccccCcccchhhhHHHhcccceeeccCCCCCcchH
Confidence 13579999999999999999999999999 789999999999997642 22111110 01256677777776322
Q ss_pred HHHHHHHc-cCCCCceeeEEEeceeccceEEEEEEEeccCCCHHHHHHHHHHc-cCCCCCcc
Q psy8544 212 AKAVAKVI-PDLEGKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAA-SQGPMKGI 271 (364)
Q Consensus 212 ak~~~kVl-PeL~gki~~~avRVPv~~gs~~dl~~~l~k~~s~eei~~~l~~a-~~~~lkgi 271 (364)
.+.+.+++ +.+ +++.|++|||+++||+..++++++++++.+|+.++++++ +..++-.+
T Consensus 251 e~~~~~~~~~~~--~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~v~~~~~~~y~~~~fV~~ 310 (381)
T PLN02968 251 EQGLADAAGSKV--TPSFTPHLMPMSRGMQSTVYVHYAPGVTAEDLHQHLKERYEGEEFVKV 310 (381)
T ss_pred HHHHHHHhCCCC--CEEEEeEEeeccccEEEEEEEEeCCCCCHHHHHHHHHHhCCCCCEEEe
Confidence 22233443 333 599999999999999999999999999999999999994 44454444
No 38
>KOG4777|consensus
Probab=99.90 E-value=4.1e-24 Score=199.69 Aligned_cols=224 Identities=15% Similarity=0.212 Sum_probs=171.9
Q ss_pred eEE-EEc-cChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECC-----------
Q psy8544 4 KIG-ING-FGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNG----------- 69 (364)
Q Consensus 4 rVa-InG-~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~g----------- 69 (364)
|+| |+| +|.|||+++-+|.+| .|+|..+..+ .++.|....+.+
T Consensus 5 k~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS-----------------------~RSAGK~ya~a~~wkqt~~lp~~ 61 (361)
T KOG4777|consen 5 KSAPVLGATGAVGQRFISLLSDHPYFSIKVLGAS-----------------------KRSAGKRYAFAGNWKQTDLLPES 61 (361)
T ss_pred cccceeeccchhHHHHHHHhccCCcceeeeeccc-----------------------ccccCCceEecccchhcccccch
Confidence 577 999 999999999999999 8887544332 223333333333
Q ss_pred -EEEEEEecCCCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCC-----CCCeEEcccCccccCC---
Q psy8544 70 -KKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSK-----DAPMFVCGVNLDKYDP--- 140 (364)
Q Consensus 70 -k~I~v~~~~~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~-----d~p~vV~gVN~~~~~~--- 140 (364)
..+.|. +-+++.|. ++||||+..+...+.|.-+...++|- +|+|+++. ++|++||+||+|+++.
T Consensus 62 ~~e~~V~-ec~~~~F~----ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~ 134 (361)
T KOG4777|consen 62 AHEYTVE-ECTADSFN----ECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKV 134 (361)
T ss_pred hhhhhHh-hcChhhcc----cccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhhee
Confidence 445553 34566664 89999999999988888888888887 99999874 5999999999999875
Q ss_pred C--------CCeEecCCchhhhHHhHHHHHhhhc-CeeEEEEEeeeccccchhhhcCCCcccccccccccceeecCCCCh
Q psy8544 141 S--------HSVVSNASCTTNCLAPLAKVIHDNF-EILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGA 211 (364)
Q Consensus 141 ~--------~~IISnaSCTTn~Lap~lk~L~d~f-GI~~~~~TTvha~t~~q~~~D~~~~~d~r~~r~~a~NIIP~~tGa 211 (364)
. .-||.|+||+|..+...|||||++| .|++..++||||+||++-.. +.. .-.+..||+|.+.|.
T Consensus 135 ~~~~~k~~~G~iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGAG~ap----gv~---~vdildnilp~igge 207 (361)
T KOG4777|consen 135 GLDTGKMGKGAIIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGAGAAP----GVE---LVDILDNILPGIGGE 207 (361)
T ss_pred ccccCCCCCceEEecCCCCeeeEEeechhHHhhccchhhhhhhhhhhhccCCcCC----Cch---HHHHHHhhcCCCCcc
Confidence 1 2399999999999999999999999 69999999999999986321 111 224778999999776
Q ss_pred HH----HHHHHccCCC-----------CceeeEEEeceeccceEEEEEEEeccC--CCHHHHHHHHHHcc
Q psy8544 212 AK----AVAKVIPDLE-----------GKLTGMAFRVPVPNVSVVDLTVRLCCD--VTYDEIKAKVKAAS 264 (364)
Q Consensus 212 ak----~~~kVlPeL~-----------gki~~~avRVPv~~gs~~dl~~~l~k~--~s~eei~~~l~~a~ 264 (364)
.. +..|+|-.++ .++++.|-|||+.++|+..+..+|.-+ .+.+++++++.+..
T Consensus 208 e~k~ewet~kiL~s~n~~i~~~~l~ee~~vsaqcnRv~v~Dgh~~cis~~f~~~~~pa~~qv~~~l~eyv 277 (361)
T KOG4777|consen 208 ENKFEWETAKILFSHNAPILDNGLNEEEMVSAQCNRVIVNDGHVKCISTCFRVPVMPAHAQVVNLLFEYV 277 (361)
T ss_pred chhhhHHHHHhhhccCCccccccccHHHhhhhhcceeeEecCceEEEEEEeecCCCCcHHHHHHHHHhcc
Confidence 42 3345543221 347789999999999999999999844 45899999998876
No 39
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=99.88 E-value=2.5e-21 Score=189.11 Aligned_cols=222 Identities=13% Similarity=0.091 Sum_probs=164.2
Q ss_pred CCceEEEEc-cChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecC
Q psy8544 1 MAYKIGING-FGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKM 78 (364)
Q Consensus 1 m~irVaInG-~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~ 78 (364)
|++||||+| +|.+|+.++|+|.+| +++++++.... +..+
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~--------------------------~~~~------------- 41 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAK--------------------------RKDA------------- 41 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCC--------------------------CCcc-------------
Confidence 789999999 999999999999999 99998775420 0000
Q ss_pred CCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCC-----CCCeEEcccCccccCC--CCCeEecCCch
Q psy8544 79 KPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSK-----DAPMFVCGVNLDKYDP--SHSVVSNASCT 151 (364)
Q Consensus 79 ~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~-----d~p~vV~gVN~~~~~~--~~~IISnaSCT 151 (364)
.+....|. ++|+||.|++...++++++...++|+ +||+.+++ ++|..+||+|++..+. ..++|+||+|.
T Consensus 42 ~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEvn~~~~~~i~~~~~IanPgC~ 117 (313)
T PRK11863 42 AARRELLN--AADVAILCLPDDAAREAVALIDNPAT--RVIDASTAHRTAPGWVYGFPELAPGQRERIAAAKRVANPGCY 117 (313)
T ss_pred cCchhhhc--CCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChhhhcCCCCeEEcCccCHHHHHHhhcCCeEEcCCcH
Confidence 01112343 68999999999999999998888888 78988874 5899999999765543 56899999999
Q ss_pred hhhHHhHHHHHhhhcCeeEEEEEeeeccc---cchhhhcCCCccccc--ccccccceeecCCCC-hH---HHHHHHccCC
Q psy8544 152 TNCLAPLAKVIHDNFEILEGLMTTVHAVT---ATQKTVDAPSKKMWR--DGRGANQNIIPASTG-AA---KAVAKVIPDL 222 (364)
Q Consensus 152 Tn~Lap~lk~L~d~fGI~~~~~TTvha~t---~~q~~~D~~~~~d~r--~~r~~a~NIIP~~tG-aa---k~~~kVlPeL 222 (364)
++++...|+||+++..|++..+++++++| |+++-.. .... +. -+..|++|+.-+ .. .|+.+.+-.+
T Consensus 118 ~Ta~~laL~PL~~~~li~~~~~i~i~a~SG~SGAG~~~~----~~~~~~~~-~~~~n~~~Y~~~~~HrH~pEi~~~l~~~ 192 (313)
T PRK11863 118 PTGAIALLRPLVDAGLLPADYPVSINAVSGYSGGGKAMI----AAYEAAPD-GKAPAFRLYGLGLAHKHLPEMQAHAGLA 192 (313)
T ss_pred HHHHHHHHHHHHHcCCcccCceEEEEEccccccCCccch----HHHhhhhh-hhccCeeeccCCcCCcchHHHHHHhccc
Confidence 99999999999997666666678999996 4543211 1111 11 257899999866 33 3555555332
Q ss_pred -CCceeeEEEeceeccceEEEEEEEe---ccCCCHHHHHHHHHHccCC-CCCccc
Q psy8544 223 -EGKLTGMAFRVPVPNVSVVDLTVRL---CCDVTYDEIKAKVKAASQG-PMKGIL 272 (364)
Q Consensus 223 -~gki~~~avRVPv~~gs~~dl~~~l---~k~~s~eei~~~l~~a~~~-~lkgil 272 (364)
+..++.+ -+|+.+|++..+++++ +++++.+|+.++++++-++ |+--++
T Consensus 193 ~~~~F~Ph--l~p~~rGil~Ti~~~~~~~~~~~~~~~i~~~~~~~Y~~epfV~v~ 245 (313)
T PRK11863 193 RRPIFTPS--VGNFRQGMLVTVPLHLRLLPGGPTAEDLHAALADHYAGEAFVRVA 245 (313)
T ss_pred cCcEEEee--EccccCcEEEEEEEEecccCCCCCHHHHHHHHHHHcCCCCeEEEe
Confidence 1224433 4799999999999997 8889999999999986532 443343
No 40
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=99.77 E-value=9e-18 Score=163.51 Aligned_cols=216 Identities=13% Similarity=0.053 Sum_probs=160.6
Q ss_pred ceEEEEc-cChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCC
Q psy8544 3 YKIGING-FGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKP 80 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p 80 (364)
.||+|.| .|-.|..++|+|..| ++|++.+..-. + +...++
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~-------~-------------------------------~~~~~~ 43 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDR-------R-------------------------------KDAAER 43 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEeccc-------c-------------------------------cCcCCH
Confidence 5899999 999999999999999 99998885420 0 001112
Q ss_pred CCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCC-----CCCeEEcccCccccCC--CCCeEecCCchhh
Q psy8544 81 EEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSK-----DAPMFVCGVNLDKYDP--SHSVVSNASCTTN 153 (364)
Q Consensus 81 ~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~-----d~p~vV~gVN~~~~~~--~~~IISnaSCTTn 153 (364)
+.+ + .++|+||.|++...++++++...++|+ +||+.+++ +.|..+||+|++..+. ..++|+||+|.++
T Consensus 44 ~~~-~--~~~D~vFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEln~~~~~~i~~a~lIAnPgC~aT 118 (310)
T TIGR01851 44 AKL-L--NAADVAILCLPDDAAREAVSLVDNPNT--CIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIANPGCYPT 118 (310)
T ss_pred hHh-h--cCCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChHHhCCCCCeEEccccCHHHHHhhccCCEEECCCCHHH
Confidence 222 1 268999999999999999998888888 78988864 5899999999775543 5689999999999
Q ss_pred hHHhHHHHHhhhcCeeEEEEEeeecccc---chhh-hcCCCcccccccccccceeecCCCC-h---HHHHHHHccCCCCc
Q psy8544 154 CLAPLAKVIHDNFEILEGLMTTVHAVTA---TQKT-VDAPSKKMWRDGRGANQNIIPASTG-A---AKAVAKVIPDLEGK 225 (364)
Q Consensus 154 ~Lap~lk~L~d~fGI~~~~~TTvha~t~---~q~~-~D~~~~~d~r~~r~~a~NIIP~~tG-a---ak~~~kVlPeL~gk 225 (364)
+++.+|+||+++..|++...++++++|| +++- .+..+ +..++. ....|+-|+.-+ . ..|+.+.+-.+ -+
T Consensus 119 a~~LaL~PL~~~~li~~~~~~~~~a~SG~SGAGr~~~~~l~-~q~~~~-e~~~~~~~Y~~~~~HrH~pEi~q~l~~~-~~ 195 (310)
T TIGR01851 119 GFIALMRPLVEAGILPADFPITINAVSGYSGGGKAMIADYE-QGSADN-PSLQPFRIYGLALTHKHLPEMRVHSGLA-LP 195 (310)
T ss_pred HHHHHHHHHHHcCCccccceEEEEeccccCccChhhhHHhh-hcccch-hhccCceeccCCCCCCcHHHHHHHhCCC-CC
Confidence 9999999999987777776799999987 4432 22111 110111 235677777644 3 23444444322 34
Q ss_pred eeeEEEeceeccceEEEEEEEe---ccCCCHHHHHHHHHHcc
Q psy8544 226 LTGMAFRVPVPNVSVVDLTVRL---CCDVTYDEIKAKVKAAS 264 (364)
Q Consensus 226 i~~~avRVPv~~gs~~dl~~~l---~k~~s~eei~~~l~~a~ 264 (364)
+.-+..-+|...|=+..+++++ .++++.+|+.++++++=
T Consensus 196 v~FtPhl~p~~RGil~Ti~~~l~~~~~~~~~~~~~~~~~~~Y 237 (310)
T TIGR01851 196 PIFTPAVGNFAQGMAVTIPLHLQTLASKVSPADIHAALADYY 237 (310)
T ss_pred EEEEeEEccccCcEEEEEEEEeccCCCCCCHHHHHHHHHHHH
Confidence 6677788999999999999999 88899999999999754
No 41
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.63 E-value=7e-16 Score=149.92 Aligned_cols=153 Identities=15% Similarity=0.105 Sum_probs=113.8
Q ss_pred CceEEEEccChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCC
Q psy8544 2 AYKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKP 80 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p 80 (364)
++||||+|+|.||+..+..+.+. +++++++.+. |++.- .+++...+|. .. .+.+.+- + .
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdi--d~es~--gla~A~~~Gi---~~-------~~~~ie~-L-----L 63 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGI--DPESD--GLARARRLGV---AT-------SAEGIDG-L-----L 63 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeC--ChhhH--HHHHHHHcCC---Cc-------ccCCHHH-H-----H
Confidence 58999999999999877777766 8999999986 55431 1111111121 00 0111000 0 1
Q ss_pred CCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCC-CCCCeEEcccCccccCC--CCCeEecCCchhhhHHh
Q psy8544 81 EEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPS-KDAPMFVCGVNLDKYDP--SHSVVSNASCTTNCLAP 157 (364)
Q Consensus 81 ~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps-~d~p~vV~gVN~~~~~~--~~~IISnaSCTTn~Lap 157 (364)
++.+|. ++|+||+|||.....+.++.++++|+ .||+..+ ...|++||+||.+.+.. ..++|+|++|+|+.++.
T Consensus 64 ~~~~~~--dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ati~~v~ 139 (302)
T PRK08300 64 AMPEFD--DIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQATIPIVA 139 (302)
T ss_pred hCcCCC--CCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHHHHHHH
Confidence 122343 69999999999999999999999998 7777665 47999999999988764 36899999999999999
Q ss_pred HHHHHhhhcCeeEEEEEeeeccc
Q psy8544 158 LAKVIHDNFEILEGLMTTVHAVT 180 (364)
Q Consensus 158 ~lk~L~d~fGI~~~~~TTvha~t 180 (364)
+|+++++. ++.++. +||++.|
T Consensus 140 Al~~v~~~-~~~eIv-at~~s~s 160 (302)
T PRK08300 140 AVSRVAPV-HYAEIV-ASIASKS 160 (302)
T ss_pred HhcccCcC-ceeeee-eeehhhc
Confidence 99998765 888887 9999988
No 42
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.47 E-value=4.5e-13 Score=129.70 Aligned_cols=149 Identities=17% Similarity=0.199 Sum_probs=110.4
Q ss_pred CceEEEEccChHHHHHHHHHhcC-CCcEEEEeCCCCCHHH--HHHHhhcccccccCCcceeecCCeEEECCEEEEEEecC
Q psy8544 2 AYKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDY--LAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKM 78 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~--~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~ 78 (364)
++||||+|.|+||+..+..+.+. +++++++.++ +++. ++.--+ +| -...+.+.+.-+ .
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~--d~es~~la~A~~----~G----------i~~~~~~~e~ll---~ 61 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGI--DPESDGLARARE----LG----------VKTSAEGVDGLL---A 61 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeC--CcccHHHHHHHH----CC----------CCEEECCHHHHh---c
Confidence 47999999999999876666544 8999999986 4543 211111 11 011111111000 1
Q ss_pred CCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEe-CCCCCCCeEEcccCccccCC--CCCeEecCCchhhhH
Q psy8544 79 KPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIIT-APSKDAPMFVCGVNLDKYDP--SHSVVSNASCTTNCL 155 (364)
Q Consensus 79 ~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIs-aps~d~p~vV~gVN~~~~~~--~~~IISnaSCTTn~L 155 (364)
+.++|+||+||+.....+.+..++++|+ .||+ .|.+..|++||+||.+.... ..++|++++|.|+.+
T Consensus 62 --------~~dIDaV~iaTp~~~H~e~a~~al~aGk--~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~ 131 (285)
T TIGR03215 62 --------NPDIDIVFDATSAKAHARHARLLAELGK--IVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPI 131 (285)
T ss_pred --------CCCCCEEEECCCcHHHHHHHHHHHHcCC--EEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHH
Confidence 1268999999999999999999999987 5555 45567999999999888764 468999999999999
Q ss_pred HhHHHHHhhhcCeeEEEEEeeecccc
Q psy8544 156 APLAKVIHDNFEILEGLMTTVHAVTA 181 (364)
Q Consensus 156 ap~lk~L~d~fGI~~~~~TTvha~t~ 181 (364)
+..++.+++...+ ..++||++.|+
T Consensus 132 ~~al~r~~d~~~~--~iv~ti~s~S~ 155 (285)
T TIGR03215 132 VAAISRVAPVHYA--EIVASIASRSA 155 (285)
T ss_pred HHHHHHhhccccE--EEEEEEEeecc
Confidence 9999999998755 56788999996
No 43
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.23 E-value=7.2e-10 Score=109.02 Aligned_cols=294 Identities=15% Similarity=0.162 Sum_probs=176.2
Q ss_pred CCceEEEEc-cChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecC
Q psy8544 1 MAYKIGING-FGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKM 78 (364)
Q Consensus 1 m~irVaInG-~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~ 78 (364)
|++||+|+| .|-.|-+++|+|.+| ++|+..+... ++ .--.+...|..+.+-+ .+++ +..
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~----~~--~g~~~~~~~p~l~g~~------------~l~~-~~~ 61 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSR----ER--AGKPVSDVHPNLRGLV------------DLPF-QTI 61 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeech----hh--cCCchHHhCccccccc------------cccc-ccC
Confidence 679999999 899999999999999 9996555432 10 0000001111111100 0111 223
Q ss_pred CCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCC---C--------------C----CeEE---cccC
Q psy8544 79 KPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSK---D--------------A----PMFV---CGVN 134 (364)
Q Consensus 79 ~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~---d--------------~----p~vV---~gVN 134 (364)
+++.+ ...++|+||.|+..-.+++.++..++.|++ ||+.+.+ + . .--| +|.|
T Consensus 62 ~~~~~--~~~~~DvvFlalPhg~s~~~v~~l~~~g~~--VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~ 137 (349)
T COG0002 62 DPEKI--ELDECDVVFLALPHGVSAELVPELLEAGCK--VIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELH 137 (349)
T ss_pred Chhhh--hcccCCEEEEecCchhHHHHHHHHHhCCCe--EEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccC
Confidence 44444 223689999999999999999999988884 7876653 1 0 1223 4566
Q ss_pred ccccCCCCCeEecCCchhhhHHhHHHHHhhhc--CeeE-EEEEeeeccccchhhhcCCCcccccccccccceeecCC---
Q psy8544 135 LDKYDPSHSVVSNASCTTNCLAPLAKVIHDNF--EILE-GLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPAS--- 208 (364)
Q Consensus 135 ~~~~~~~~~IISnaSCTTn~Lap~lk~L~d~f--GI~~-~~~TTvha~t~~q~~~D~~~~~d~r~~r~~a~NIIP~~--- 208 (364)
.+++. .-+.|+||.|-.++...+|+||-+.= .+.. .++-.+=-+||+++-.- ....+. ....|+.|+.
T Consensus 138 ~e~i~-~A~lIAnPGCypTa~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s----~~~~~~-e~~~~~~~Y~~~~ 211 (349)
T COG0002 138 REKIR-GAKLIANPGCYPTAAILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKAS----VKNHFP-EVNDSLRPYGLTG 211 (349)
T ss_pred HHHHh-cCCEeeCCCchHHHHHHHHHHHHHcCCcCCCCceEEEEeEecCcCCCCcc----ccccch-hhccccccccccc
Confidence 66665 45799999999999999999998752 2333 23444444555543211 011111 2355888874
Q ss_pred CChHHHHHHHccCCC---CceeeEEEeceeccceEEEEEEEeccCCCHHHHHHHHHHccCC-CCCccccccCCceEeecC
Q psy8544 209 TGAAKAVAKVIPDLE---GKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAASQG-PMKGILGYTEDEVVSSDF 284 (364)
Q Consensus 209 tGaak~~~kVlPeL~---gki~~~avRVPv~~gs~~dl~~~l~k~~s~eei~~~l~~a~~~-~lkgil~~~e~~~VS~df 284 (364)
+-...|+.+-+..|. ..+.-|..-+|...|=+..+++.+++.++.+|+.+++++.=++ |+--|.....-|-+ -+.
T Consensus 212 HrH~pEi~q~l~~l~~~~~~v~FtPhl~p~~RGIl~Ti~~~l~~~~t~~~i~~~y~~~Y~~epfVrv~~~~~~P~~-k~V 290 (349)
T COG0002 212 HRHTPEIEQHLGRLAGRKVPVIFTPHLGPFVRGILATIYLKLKDLVTLEELHAAYEEFYAGEPFVRVVPEGGYPDT-KAV 290 (349)
T ss_pred cCchHHHHHHhhhcccCcCceEEecccccccceEEEEEEEecCCCCCHHHHHHHHHHHhCCCCeEEEecCCCCCCh-hhh
Confidence 222345555555454 3355566678999999999999999999999999999886544 44333331111111 123
Q ss_pred CCCCceeEEecCCcceecC--ceEEEEEEecCCC-cchhhhhHHHHHH
Q psy8544 285 NGEVCSSVFDAKAGIALNK--NFVKLVTWYDNEY-GYSCRVLDLIQYM 329 (364)
Q Consensus 285 ~~~~~s~i~d~~~~~~~~~--~~~kl~~WyDNE~-gys~r~~dl~~~~ 329 (364)
+|..+.-|. ...++ +.+-+++=.||=- |=|-+-|-=|+.|
T Consensus 291 ~GsN~cdIg-----f~~d~~~~rvvvvsaIDNL~KGAAGQAVQnmNim 333 (349)
T COG0002 291 AGSNFCDIG-----FAVDERTGRVVVVSAIDNLVKGAAGQAVQNMNIM 333 (349)
T ss_pred cCCcceEEE-----EEEcCCCCEEEEEEEeccccccHHHHHHHHHHHH
Confidence 554433332 22332 4677788888843 3333333333443
No 44
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....
Probab=99.12 E-value=2.6e-10 Score=103.71 Aligned_cols=105 Identities=17% Similarity=0.175 Sum_probs=80.3
Q ss_pred HHHHhhh-cCeeEEEEEeeeccccchhh------------hcCCCcccccccccccceeecCCCC-------hHHHHH--
Q psy8544 159 AKVIHDN-FEILEGLMTTVHAVTATQKT------------VDAPSKKMWRDGRGANQNIIPASTG-------AAKAVA-- 216 (364)
Q Consensus 159 lk~L~d~-fGI~~~~~TTvha~t~~q~~------------~D~~~~~d~r~~r~~a~NIIP~~tG-------aak~~~-- 216 (364)
|+||+++ ++++++.++|+|++||+++- +.+...+.....+++++|++|+..+ +.+++.
T Consensus 1 L~PL~~~l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~~ 80 (184)
T PF02774_consen 1 LAPLHKALFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELKM 80 (184)
T ss_dssp HHHHHHTHHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHHH
T ss_pred CcchhhCcCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHHh
Confidence 6899998 99999999999999998762 2221123334566899999999754 333332
Q ss_pred -----HHccCCCCceeeEEEeceeccceEEEEEEEec-cCCCHHHHHHHHHHcc
Q psy8544 217 -----KVIPDLEGKLTGMAFRVPVPNVSVVDLTVRLC-CDVTYDEIKAKVKAAS 264 (364)
Q Consensus 217 -----kVlPeL~gki~~~avRVPv~~gs~~dl~~~l~-k~~s~eei~~~l~~a~ 264 (364)
+++.. ..+++.+|+|||+++||+..++++++ ++.+.+++.++|.+.+
T Consensus 81 ~~~~~~~l~~-~~~v~~t~~~vPv~rG~~~ti~v~~~~~~~~~~~~~~~~~~~~ 133 (184)
T PF02774_consen 81 IAETRKILGF-PPRVSFTCVRVPVFRGHLATIYVELKETPVDVEEIYEAFYKGP 133 (184)
T ss_dssp HHHHHHHCTE-TTEEEEEEEEESSSSEEEEEEEEEESSSHHHHHHHHHHHHTST
T ss_pred hccccceeec-cccccccEEEEeeeeeEceeEEEEecCCHHHHHHHHHHHhCCC
Confidence 33322 23799999999999999999999994 8899999999988773
No 45
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=99.07 E-value=5e-11 Score=100.92 Aligned_cols=112 Identities=21% Similarity=0.246 Sum_probs=77.5
Q ss_pred eEEEEc-cChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCC
Q psy8544 4 KIGING-FGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPE 81 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~ 81 (364)
||||+| +|.+|+.++|+|.++ +++++.+-....+. -.++...++.+ .....+.+.. .+++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~-----g~~~~~~~~~~------------~~~~~~~~~~-~~~~ 62 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSA-----GKPLSEVFPHP------------KGFEDLSVED-ADPE 62 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTT-----TSBHHHTTGGG------------TTTEEEBEEE-TSGH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecccc-----CCeeehhcccc------------ccccceeEee-cchh
Confidence 799999 999999999999999 99998886542100 01111111100 0112233322 2333
Q ss_pred CCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCC-----CCCeEEcccCccccC
Q psy8544 82 EIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSK-----DAPMFVCGVNLDKYD 139 (364)
Q Consensus 82 ~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~-----d~p~vV~gVN~~~~~ 139 (364)
.+ .++|+||.|++...+++.++..+++|+ .||+.+++ +.|+++||+|.+.+.
T Consensus 63 ~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~--~ViD~s~~~R~~~~~~~~~pevn~~~i~ 119 (121)
T PF01118_consen 63 EL----SDVDVVFLALPHGASKELAPKLLKAGI--KVIDLSGDFRLDDDVPYGLPEVNREQIK 119 (121)
T ss_dssp HH----TTESEEEE-SCHHHHHHHHHHHHHTTS--EEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred Hh----hcCCEEEecCchhHHHHHHHHHhhCCc--EEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence 33 289999999999999999999999999 78988874 589999999998764
No 46
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.33 E-value=1.1e-06 Score=74.00 Aligned_cols=111 Identities=22% Similarity=0.307 Sum_probs=68.9
Q ss_pred eEEEEc-cChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCC
Q psy8544 4 KIGING-FGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPE 81 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~ 81 (364)
||||.| .|++|+.+++.+.++ +++++++... + +.. |+ ..+....++ .. + +. .+.+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~--~-~~~----------~~---~~~~~~~~~--~~--~-~~--~~~~ 57 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAAS--A-RSA----------GK---RVSEAGPHL--KG--E-VV--LELE 57 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEec--h-hhc----------Cc---CHHHHCccc--cc--c-cc--cccc
Confidence 689999 799999999999987 9999999442 1 100 00 000001111 00 0 00 1122
Q ss_pred CCCCcCCCccEEEeecCCCCCHhhHH---HHHhCCCCEEEEeCCCC-----CCCeEEcccCccccC
Q psy8544 82 EIPWSQTGAEYIVESTGVFKTKDTAS---AHLKGGAKKVIITAPSK-----DAPMFVCGVNLDKYD 139 (364)
Q Consensus 82 ~~~w~~~gvDiV~estG~f~s~e~a~---~hl~aGakkVIIsaps~-----d~p~vV~gVN~~~~~ 139 (364)
...|...++|+||.|++.....+... ..++.|+ +||+.++. +.|+++|++|.+.++
T Consensus 58 ~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~--~viD~s~~~~~~~~~~~~~~~~n~~~~~ 121 (122)
T smart00859 58 PEDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGV--KVIDLSSAFRMDDDVPYGLPEVNPEAIK 121 (122)
T ss_pred cCChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCC--EEEECCccccCCCCceEEcCccCHHHhc
Confidence 23344458999999998877766433 2234454 89987764 579999999987653
No 47
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.03 E-value=1e-05 Score=77.70 Aligned_cols=143 Identities=16% Similarity=0.220 Sum_probs=88.6
Q ss_pred CCceEEEEccChHHHHHHHHHhcC---CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEec
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHR---NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQK 77 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~---~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~ 77 (364)
|++||||+|+|.||+.+++.|... .+++++|++. +++....+. +. ..+ .
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~--~~~~~~~~~----------------~~--------~~~--~ 52 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRN--AADLPPALA----------------GR--------VAL--L 52 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecC--CHHHHHHhh----------------cc--------Ccc--c
Confidence 889999999999999999988754 4899999886 333221111 11 112 1
Q ss_pred CCCCCC-CCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCC-CCCCeEEcccCccccCCCCCeEecCCchhhhH
Q psy8544 78 MKPEEI-PWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPS-KDAPMFVCGVNLDKYDPSHSVVSNASCTTNCL 155 (364)
Q Consensus 78 ~~p~~~-~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps-~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~L 155 (364)
.+++++ .| ..|+|+||+|...-+|+++..|++|+.-+|+|-.. +|.-+. -.+- +.......=|--||-..-.|
T Consensus 53 ~~l~~ll~~---~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~-~~l~-~~A~~~g~~i~ipSGAigGl 127 (267)
T PRK13301 53 DGLPGLLAW---RPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGALADDALR-ARLI-AAAEAGGARIRVPAGAIAGL 127 (267)
T ss_pred CCHHHHhhc---CCCEEEECCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHH-HHHH-HHHHhCCCEEEEeChHHHhH
Confidence 345553 44 58999999999999999999999999888887443 442111 0000 00011122233355555544
Q ss_pred HhHHHHHhhhcCeeEEEEEeeec
Q psy8544 156 APLAKVIHDNFEILEGLMTTVHA 178 (364)
Q Consensus 156 ap~lk~L~d~fGI~~~~~TTvha 178 (364)
--+- .. ...|+.++.+||--.
T Consensus 128 D~l~-aa-~~~~~~~v~~~t~K~ 148 (267)
T PRK13301 128 DYLQ-AV-AGRDDAEVVYESRKP 148 (267)
T ss_pred HHHH-Hh-hccCceEEEEEEecC
Confidence 3332 22 236899988887643
No 48
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.80 E-value=6.3e-05 Score=72.27 Aligned_cols=91 Identities=25% Similarity=0.365 Sum_probs=60.6
Q ss_pred ceEEEEccChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPE 81 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~ 81 (364)
+||||.|+|+||+.+++.+.+. +++++++-+.....+.....+ +. + +.++ .+.+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~----------------~~-----~--~~~~--~d~~ 56 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRAL----------------GE-----A--VRVV--SSVD 56 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhh----------------cc-----C--Ceee--CCHH
Confidence 7999999999999999999877 899988864311111110000 00 1 2222 2344
Q ss_pred CCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCC
Q psy8544 82 EIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAP 122 (364)
Q Consensus 82 ~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsap 122 (364)
.+ +..+|+|+|||+.....+.+...+++|.. |++-.|
T Consensus 57 ~l---~~~~DvVve~t~~~~~~e~~~~aL~aGk~-Vvi~s~ 93 (265)
T PRK13303 57 AL---PQRPDLVVECAGHAALKEHVVPILKAGID-CAVISV 93 (265)
T ss_pred Hh---ccCCCEEEECCCHHHHHHHHHHHHHcCCC-EEEeCh
Confidence 44 23689999999998888999999999974 444333
No 49
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.80 E-value=0.00055 Score=67.77 Aligned_cols=87 Identities=15% Similarity=0.251 Sum_probs=60.6
Q ss_pred CceEEEEccChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCC
Q psy8544 2 AYKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKP 80 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p 80 (364)
++||||+|+|.||+.+++++.++ ++++|++-+.. +++.+.. . +.++...+.
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~-~~~~~~~--------------------~-------~~v~~~~d~ 54 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR-GAETLDT--------------------E-------TPVYAVADD 54 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC-cHHHHhh--------------------c-------CCccccCCH
Confidence 58999999999999999999887 99999998762 2232110 0 001111111
Q ss_pred CCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEe
Q psy8544 81 EEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIIT 120 (364)
Q Consensus 81 ~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIs 120 (364)
.. +. ..+|+|+-||+.....+.+...+++|. .||-|
T Consensus 55 ~e--~l-~~iDVViIctPs~th~~~~~~~L~aG~-NVV~s 90 (324)
T TIGR01921 55 EK--HL-DDVDVLILCMGSATDIPEQAPYFAQFA-NTVDS 90 (324)
T ss_pred HH--hc-cCCCEEEEcCCCccCHHHHHHHHHcCC-CEEEC
Confidence 11 11 369999999999999999999999987 34444
No 50
>KOG4354|consensus
Probab=97.77 E-value=0.0003 Score=66.66 Aligned_cols=288 Identities=16% Similarity=0.178 Sum_probs=151.9
Q ss_pred CceEEEEc-cChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECC-EEEEE--Ee
Q psy8544 2 AYKIGING-FGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNG-KKIAV--FQ 76 (364)
Q Consensus 2 ~irVaInG-~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~g-k~I~v--~~ 76 (364)
.+|||..| -|--|+.++|++.++ .+|+..+..- +.+|.+|..-- .+|.- ++
T Consensus 19 ~~rv~LlGArGYTGknlv~Lin~HPylevthvssr------------------------el~Gqkl~~ytk~eiqy~~ls 74 (340)
T KOG4354|consen 19 DIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSR------------------------ELAGQKLEVYTKLEIQYADLS 74 (340)
T ss_pred CceEEEEeccccchhhHHHHhcCCCceEEEeeehh------------------------hhcCCcccCcchhheeecccc
Confidence 47999999 699999999999999 8999766431 01122221100 01100 00
Q ss_pred cCCCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCC--CCC--eEE---cccCc-cccCCCCCeEecC
Q psy8544 77 KMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSK--DAP--MFV---CGVNL-DKYDPSHSVVSNA 148 (364)
Q Consensus 77 ~~~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~--d~p--~vV---~gVN~-~~~~~~~~IISna 148 (364)
..|...+. ....+|..+.+...-.-+.+...-..+.-|.+||+-+.. -.| -.+ +|.|+ +++. ..+.|+||
T Consensus 75 t~D~~kle-e~~avd~wvmaLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~-na~~iaNP 152 (340)
T KOG4354|consen 75 TVDAVKLE-EPHAVDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIK-NARLIANP 152 (340)
T ss_pred hhhHHHhh-cCCceeeeeeecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHh-hhhhccCC
Confidence 01111110 011355556666554444444443334445567754432 144 444 45674 3344 45689999
Q ss_pred Cchhhh----HHhHHHHHhhhcCeeEEEEEeeeccccchhhhcCCCcccccccccccceeecCCCChHHHHHHHccCCCC
Q psy8544 149 SCTTNC----LAPLAKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEG 224 (364)
Q Consensus 149 SCTTn~----Lap~lk~L~d~fGI~~~~~TTvha~t~~q~~~D~~~~~d~r~~r~~a~NIIP~~tGaak~~~kVlPeL~g 224 (364)
.|-.+. |.|++|.+.-. -+ +-.+--|||++. +|+.++ ...-++.|+||..-.--..++.|--.++-
T Consensus 153 GCYaTgsQl~l~Pllk~i~g~---p~--ifgvSGySGAGt---kpspkN--d~~~l~nnlipY~ltdHiHerEIs~r~k~ 222 (340)
T KOG4354|consen 153 GCYATGSQLPLVPLLKAILGK---PE--IFGVSGYSGAGT---KPSPKN--DYSELANNLIPYGLTDHIHEREISQRSKV 222 (340)
T ss_pred CcccccCcccchHHHHHhcCC---cc--eeeeccccCCCC---CCCCcc--CHHHHhcCCccccccccchhHhHHHhhCC
Confidence 996654 56666665432 22 222344566542 233121 12248999999852221222222112222
Q ss_pred ceeeEEEeceeccceEEEEEEEeccCCCHHHHHHHHHHccCC-CCCccccccCCceEeecCCCCCceeEEecCCcceecC
Q psy8544 225 KLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAASQG-PMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIALNK 303 (364)
Q Consensus 225 ki~~~avRVPv~~gs~~dl~~~l~k~~s~eei~~~l~~a~~~-~lkgil~~~e~~~VS~df~~~~~s~i~d~~~~~~~~~ 303 (364)
.+.-|-.-.|-+.|-...+++.+++.++.||+++.++..-|+ +|--+++ |=|+| -|..|..|-.+ ++...-..+
T Consensus 223 ~VaF~PHv~qwfqGi~lTi~vpmkksv~~~elr~lyk~~YedE~lvhV~d--dvPlv-kdv~gsh~v~~--ggF~~~~~g 297 (340)
T KOG4354|consen 223 TVAFTPHVMQWFQGIQLTIYVPMKKSVRTEELRQLYKTSYEDEELVHVLD--DVPLV-KDVRGSHYVHM--GGFPDRIPG 297 (340)
T ss_pred ceeechhHHHHhhhceEEEEEeecCcccHHHHHHHHHhhccCcceeeeec--cccce-eccCCcceeEe--ccccCCCCC
Confidence 222222234566777778889999999999999999976554 4444432 34444 35666554432 111122224
Q ss_pred ceEEEEEEecCCC-cchhhhhHHHHHHh
Q psy8544 304 NFVKLVTWYDNEY-GYSCRVLDLIQYMK 330 (364)
Q Consensus 304 ~~~kl~~WyDNE~-gys~r~~dl~~~~~ 330 (364)
+.+-+++=-||-. |=|.+.+-=+..|-
T Consensus 298 ~Ravii~tIDNLlKGAatQaLQNlNl~~ 325 (340)
T KOG4354|consen 298 DRAVIISTIDNLLKGAATQALQNLNLML 325 (340)
T ss_pred ceEEEEEehhhhhhhHHHHHHHhhhhhh
Confidence 4567777788743 45555544444443
No 51
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.65 E-value=0.00016 Score=67.86 Aligned_cols=92 Identities=18% Similarity=0.319 Sum_probs=67.3
Q ss_pred ceEEEEccChHHHHHHHHHhcC--CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHR--NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKP 80 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~--~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p 80 (364)
++|+|+|+|+||..+++.+.+- +|+++++-|. +.+..-.+.+ +. .++.. .+.
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~--~~ek~~~~~~--~~-----------------~~~~~-----s~i 54 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDR--DEEKAKELEA--SV-----------------GRRCV-----SDI 54 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecC--CHHHHHHHHh--hc-----------------CCCcc-----ccH
Confidence 5899999999999999999864 8999999986 5555444431 11 11110 111
Q ss_pred CCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCC
Q psy8544 81 EEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPS 123 (364)
Q Consensus 81 ~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps 123 (364)
+++- ..+|+++||++.-.-+++.+..|++|...+|+|-..
T Consensus 55 de~~---~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGA 94 (255)
T COG1712 55 DELI---AEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGA 94 (255)
T ss_pred HHHh---hccceeeeeCCHHHHHHHhHHHHhcCCCEEEEechh
Confidence 1211 378999999999888999999999999888888653
No 52
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.56 E-value=0.00032 Score=69.80 Aligned_cols=150 Identities=17% Similarity=0.269 Sum_probs=78.8
Q ss_pred CCceEEEEccChHHHHHHHHHhcC----------CCcEEEEeCCC--------CCHHHHHHHhhcccccccCCcceeecC
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHR----------NTPVVGINDPH--------LSVDYLAYMLKYDSTHGRFKGDVKTEG 62 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~----------~~~ivaInd~~--------~~~~~~a~ll~ydS~~g~~~~~v~~~~ 62 (364)
|++||||.|+|.||+.+++.|.++ +++||+|.|.. .+++.+.... ..+|...
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~---~~~~~~~------- 70 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVK---EETGKLA------- 70 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHH---hccCCcc-------
Confidence 889999999999999999998754 68999998741 1222211111 1111000
Q ss_pred CeEEECCEEEEEEecCCCCCCCCcCCCccEEEeecCCCCC-----HhhHHHHHhCCCCEEEEeCCCCCCCeEEcccCccc
Q psy8544 63 NNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKT-----KDTASAHLKGGAKKVIITAPSKDAPMFVCGVNLDK 137 (364)
Q Consensus 63 ~~l~i~gk~I~v~~~~~p~~~~w~~~gvDiV~estG~f~s-----~e~a~~hl~aGakkVIIsaps~d~p~vV~gVN~~~ 137 (364)
.+.+.. ...++.++ ..+..+|+|+|||+.... .+.....+++|. -||++.. .|+-. +.+.
T Consensus 71 ---~~~~~~----~~~d~~el-l~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~Gk--hVVtaNK--~pla~---~~~e 135 (341)
T PRK06270 71 ---DYPEGG----GEISGLEV-IRSVDADVVVEATPTNIETGEPALSHCRKALERGK--HVVTSNK--GPLAL---AYKE 135 (341)
T ss_pred ---cCcccc----ccCCHHHH-hhccCCCEEEECCcCcccccchHHHHHHHHHHCCC--EEEcCCc--HHHHh---hHHH
Confidence 000000 00112211 122368999999986543 677788899887 5555321 11110 1112
Q ss_pred cCC---CCCeEecCCchhhhHHhHHHHHhhhcCeeEEEEEeee
Q psy8544 138 YDP---SHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVH 177 (364)
Q Consensus 138 ~~~---~~~IISnaSCTTn~Lap~lk~L~d~fGI~~~~~TTvh 177 (364)
+.. ..++.=--..+...-.|+++.|.+. +....+..++
T Consensus 136 L~~~A~~~g~~~~~ea~v~~glPii~~l~~~--l~g~~I~~I~ 176 (341)
T PRK06270 136 LKELAKKNGVRFRYEATVGGAMPIINLAKET--LAGNDIKSIK 176 (341)
T ss_pred HHHHHHHcCCEEEEeeeeeechhHHHHHHhh--cccCceEEEE
Confidence 211 1122112234556678888888774 3344444433
No 53
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.31 E-value=0.0003 Score=59.93 Aligned_cols=92 Identities=26% Similarity=0.334 Sum_probs=53.6
Q ss_pred ceEEEEcc-ChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCC
Q psy8544 3 YKIGINGF-GRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKP 80 (364)
Q Consensus 3 irVaInG~-G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p 80 (364)
|||+|+|+ |++||.+++++.++ +++++++-+...++ ..|+--+.+- +. ....+.++ .+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~-----------~~g~d~g~~~--~~----~~~~~~v~--~~l 61 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSA-----------KVGKDVGELA--GI----GPLGVPVT--DDL 61 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTST-----------TTTSBCHHHC--TS----ST-SSBEB--S-H
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcc-----------cccchhhhhh--Cc----CCcccccc--hhH
Confidence 69999997 99999999999986 99999998762100 0121111100 00 00111221 223
Q ss_pred CCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCE
Q psy8544 81 EEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKK 116 (364)
Q Consensus 81 ~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakk 116 (364)
+.+- ..+|+++|.|-.....+.++..++.|..-
T Consensus 62 ~~~~---~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ 94 (124)
T PF01113_consen 62 EELL---EEADVVIDFTNPDAVYDNLEYALKHGVPL 94 (124)
T ss_dssp HHHT---TH-SEEEEES-HHHHHHHHHHHHHHT-EE
T ss_pred HHhc---ccCCEEEEcCChHHhHHHHHHHHhCCCCE
Confidence 2221 13899999997666667778888887743
No 54
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.22 E-value=0.00061 Score=65.54 Aligned_cols=94 Identities=21% Similarity=0.351 Sum_probs=60.1
Q ss_pred ceEEEEc-cChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCC
Q psy8544 3 YKIGING-FGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKP 80 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p 80 (364)
|||+|+| +|++|+.+++.+.++ ++++|++-|.. +++.. |+..+.+. + ... .| +.++ .++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~-~~~~~----------~~~~~~~~--~-~~~-~g--v~~~--~d~ 62 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH-GSSLQ----------GTDAGELA--G-IGK-VG--VPVT--DDL 62 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC-Ccccc----------CCCHHHhc--C-cCc-CC--ceee--CCH
Confidence 7999999 899999999999877 99999998731 22110 10000000 0 000 01 2222 233
Q ss_pred CCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEE
Q psy8544 81 EEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119 (364)
Q Consensus 81 ~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVII 119 (364)
+.+ ...+|+|+++|......+.+...+++|.. +|+
T Consensus 63 ~~l---~~~~DvVIdfT~p~~~~~~~~~al~~g~~-vVi 97 (266)
T TIGR00036 63 EAV---ETDPDVLIDFTTPEGVLNHLKFALEHGVR-LVV 97 (266)
T ss_pred HHh---cCCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 333 13589999999888888999999999864 444
No 55
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.19 E-value=0.00097 Score=64.35 Aligned_cols=86 Identities=16% Similarity=0.227 Sum_probs=59.1
Q ss_pred CceEEEEccChHHHHHHHHHhcC--CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCC
Q psy8544 2 AYKIGINGFGRIGRLVLREALHR--NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMK 79 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~--~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~ 79 (364)
++||||+|+|+||+.+++.|... +++++++.+. +++....+.+ .+|. . ..+ .+
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr--~~~~a~~~a~---~~g~----~--------------~~~--~~ 60 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVR--DPQRHADFIW---GLRR----P--------------PPV--VP 60 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECC--CHHHHHHHHH---hcCC----C--------------ccc--CC
Confidence 48999999999999999998763 7999999886 5543222211 0110 0 000 22
Q ss_pred CCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCC
Q psy8544 80 PEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAK 115 (364)
Q Consensus 80 p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGak 115 (364)
++++- ..+|+|++|++...-.+.+...+++|..
T Consensus 61 ~eell---~~~D~Vvi~tp~~~h~e~~~~aL~aGk~ 93 (271)
T PRK13302 61 LDQLA---THADIVVEAAPASVLRAIVEPVLAAGKK 93 (271)
T ss_pred HHHHh---cCCCEEEECCCcHHHHHHHHHHHHcCCc
Confidence 33332 1579999999988888998999998863
No 56
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.17 E-value=0.00098 Score=63.99 Aligned_cols=88 Identities=20% Similarity=0.366 Sum_probs=60.9
Q ss_pred ceEEEEccChHHHHHHHHHhcC--CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHR--NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKP 80 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~--~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p 80 (364)
+||||+|+|+||+.+++.+.+. +++++++-|. +++....+.+. ++. .++ .+.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~--~~~~a~~~a~~-------------------~~~---~~~--~~~ 55 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDR--NLEKAENLASK-------------------TGA---KAC--LSI 55 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECC--CHHHHHHHHHh-------------------cCC---eeE--CCH
Confidence 7999999999999999998765 6899999886 55543332210 000 111 233
Q ss_pred CCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEE
Q psy8544 81 EEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119 (364)
Q Consensus 81 ~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVII 119 (364)
+++. .++|+|++|++...-.+.+...+++|..-+++
T Consensus 56 ~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~ 91 (265)
T PRK13304 56 DELV---EDVDLVVECASVNAVEEVVPKSLENGKDVIIM 91 (265)
T ss_pred HHHh---cCCCEEEEcCChHHHHHHHHHHHHcCCCEEEE
Confidence 3332 26899999998888888888889988644333
No 57
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.07 E-value=0.0025 Score=61.24 Aligned_cols=100 Identities=20% Similarity=0.214 Sum_probs=63.1
Q ss_pred CCceEEEEc-cChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeE-EECCEEEEEEec
Q psy8544 1 MAYKIGING-FGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNI-VVNGKKIAVFQK 77 (364)
Q Consensus 1 m~irVaInG-~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l-~i~gk~I~v~~~ 77 (364)
|+|||+|+| .||+||.++|++.+. ++++++.-+.. +.. ..|+ +.+.+ -++-..+.++
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~-~~~----------~~g~-------d~ge~~g~~~~gv~v~-- 60 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRP-GSL----------SLGS-------DAGELAGLGLLGVPVT-- 60 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecC-Ccc----------cccc-------chhhhccccccCceee--
Confidence 568999999 699999999999988 89998776541 100 0111 11111 0111122332
Q ss_pred CCCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCC
Q psy8544 78 MKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPS 123 (364)
Q Consensus 78 ~~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps 123 (364)
.++. -.....|+++|-|-...+.+.++..++.|.+-||=|...
T Consensus 61 ~~~~---~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf 103 (266)
T COG0289 61 DDLL---LVKADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGF 103 (266)
T ss_pred cchh---hcccCCCEEEECCCchhhHHHHHHHHHcCCCeEEECCCC
Confidence 1111 122478999999988888999999999987555445443
No 58
>PRK06813 homoserine dehydrogenase; Validated
Probab=97.06 E-value=0.0011 Score=66.21 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=28.5
Q ss_pred CCceEEEEccChHHHHHHHHHhcC----------CCcEEEEeCC
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHR----------NTPVVGINDP 34 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~----------~~~ivaInd~ 34 (364)
|+++|+|.|||.||+.++++|.++ ++.|++|.+.
T Consensus 1 ~~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~ 44 (346)
T PRK06813 1 MKIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGR 44 (346)
T ss_pred CeeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEec
Confidence 679999999999999999998642 4678888664
No 59
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.05 E-value=0.001 Score=63.63 Aligned_cols=84 Identities=19% Similarity=0.230 Sum_probs=56.3
Q ss_pred CceEEEEcc-ChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCC
Q psy8544 2 AYKIGINGF-GRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMK 79 (364)
Q Consensus 2 ~irVaInG~-G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~ 79 (364)
+|||+|+|. |++|+.+++.+.+. +++++++-|. +++... .+ .. ..+.+ ..+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~--~~~~~~----------~~--------~~-----~~i~~--~~d 53 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDR--PGSPLV----------GQ--------GA-----LGVAI--TDD 53 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec--CCcccc----------cc--------CC-----CCccc--cCC
Confidence 379999995 99999999999876 8999999875 221100 00 00 01111 122
Q ss_pred CCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCC
Q psy8544 80 PEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAK 115 (364)
Q Consensus 80 p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGak 115 (364)
.+.+- .++|+|+++|......+.+...+++|..
T Consensus 54 l~~ll---~~~DvVid~t~p~~~~~~~~~al~~G~~ 86 (257)
T PRK00048 54 LEAVL---ADADVLIDFTTPEATLENLEFALEHGKP 86 (257)
T ss_pred HHHhc---cCCCEEEECCCHHHHHHHHHHHHHcCCC
Confidence 33221 1589999999777778889999999874
No 60
>PRK08374 homoserine dehydrogenase; Provisional
Probab=96.99 E-value=0.001 Score=66.14 Aligned_cols=98 Identities=27% Similarity=0.386 Sum_probs=56.8
Q ss_pred CCceEEEEccChHHHHHHHHHhcC----------CCcEEEEeCCC--------CCHHHHHHHhhcccccccCCcceeecC
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHR----------NTPVVGINDPH--------LSVDYLAYMLKYDSTHGRFKGDVKTEG 62 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~----------~~~ivaInd~~--------~~~~~~a~ll~ydS~~g~~~~~v~~~~ 62 (364)
|++||+|.|||.||+.++++|.++ ++.|++|.|.. .+++. ++.|-..+|..
T Consensus 1 ~~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~---l~~~~~~~~~~-------- 69 (336)
T PRK08374 1 MEVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLRE---AKEVKENFGKL-------- 69 (336)
T ss_pred CeeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHH---HHHhhhccCch--------
Confidence 789999999999999999998762 37899998741 11111 11111000000
Q ss_pred CeEEECCEEEEEEecCCCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCC
Q psy8544 63 NNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGA 114 (364)
Q Consensus 63 ~~l~i~gk~I~v~~~~~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGa 114 (364)
..+.-+ ... ...+++++ +.+..+|+|+|+|+.....+.....++.|.
T Consensus 70 ~~~~~~---~~~-~~~~~~el-l~~~~~DVvVd~t~~~~a~~~~~~al~~G~ 116 (336)
T PRK08374 70 SNWGND---YEV-YNFSPEEI-VEEIDADIVVDVTNDKNAHEWHLEALKEGK 116 (336)
T ss_pred hhcccc---ccc-cCCCHHHH-HhcCCCCEEEECCCcHHHHHHHHHHHhhCC
Confidence 000000 000 00011111 223468999999988777777788888887
No 61
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.87 E-value=0.0037 Score=51.69 Aligned_cols=92 Identities=26% Similarity=0.431 Sum_probs=65.7
Q ss_pred ceEEEEccChHHHHHHHHHhcC--CCcEEEEeCCCCCHHHHHHHhh-cccccccCCcceeecCCeEEECCEEEEEEecCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHR--NTPVVGINDPHLSVDYLAYMLK-YDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMK 79 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~--~~~ivaInd~~~~~~~~a~ll~-ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~ 79 (364)
+||||+|+|.+|+..++.+.+. ++++++|-|+ +++......+ |.. . .+ .+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~--~~~~~~~~~~~~~~-------~----------------~~--~~ 53 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDP--DPERAEAFAEKYGI-------P----------------VY--TD 53 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECS--SHHHHHHHHHHTTS-------E----------------EE--SS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeC--CHHHHHHHHHHhcc-------c----------------ch--hH
Confidence 6999999999999999888766 8999999997 5654332211 110 0 11 11
Q ss_pred CCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCC
Q psy8544 80 PEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPS 123 (364)
Q Consensus 80 p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps 123 (364)
.+++ ..+.++|+|+-||....-.+.+...+++|. .|++.-|.
T Consensus 54 ~~~l-l~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP~ 95 (120)
T PF01408_consen 54 LEEL-LADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKPL 95 (120)
T ss_dssp HHHH-HHHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESSS
T ss_pred HHHH-HHhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcCC
Confidence 2222 122369999999999988899999999998 67777764
No 62
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.83 E-value=0.0019 Score=66.29 Aligned_cols=92 Identities=20% Similarity=0.320 Sum_probs=56.8
Q ss_pred CceEEEEccChHHHHHHHHHhcC----------CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEE
Q psy8544 2 AYKIGINGFGRIGRLVLREALHR----------NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKK 71 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~----------~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~ 71 (364)
++||||.|+|.||+.++++|.++ ++++++|-+. +++.. .-+ . ..+
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~--~~~~~-~~~-------------~-------~~~-- 57 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVR--DLEKD-RGV-------------D-------LPG-- 57 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeC--Chhhc-cCC-------------C-------Ccc--
Confidence 58999999999999999988653 4789998775 32210 000 0 000
Q ss_pred EEEEecCCCCCCCCcCCCccEEEeecCCC-CCHhhHHHHHhCCCCEEEEeCC
Q psy8544 72 IAVFQKMKPEEIPWSQTGAEYIVESTGVF-KTKDTASAHLKGGAKKVIITAP 122 (364)
Q Consensus 72 I~v~~~~~p~~~~w~~~gvDiV~estG~f-~s~e~a~~hl~aGakkVIIsap 122 (364)
..++ .+++++ ..+..+|+|+||||.. ...++...++++|. .||..++
T Consensus 58 ~~~~--~d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk-hVVtaNK 105 (426)
T PRK06349 58 ILLT--TDPEEL-VNDPDIDIVVELMGGIEPARELILKALEAGK-HVVTANK 105 (426)
T ss_pred ccee--CCHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCCC-eEEEcCH
Confidence 0111 222222 1234799999999763 34677778898885 4444444
No 63
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.79 E-value=0.0067 Score=62.63 Aligned_cols=99 Identities=14% Similarity=0.258 Sum_probs=62.4
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCC--------CCHHHHHHHhhccccc-ccCCcceeecCCeEEECCEEEE
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPH--------LSVDYLAYMLKYDSTH-GRFKGDVKTEGNNIVVNGKKIA 73 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~--------~~~~~~a~ll~ydS~~-g~~~~~v~~~~~~l~i~gk~I~ 73 (364)
.||+|-|||.||+.+++.|.+.+..||+|.|.. .|++.+ ++|-..+ |.... ..+.. +.+.
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L---~~~k~~~~~~l~~---~~~~~---~~~~-- 301 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKL---KEIKEVRRGRISE---YAEEF---GAEY-- 301 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHH---HHHHHhcCCchhh---hhhhc---CCee--
Confidence 689999999999999999998899999998821 155533 3332111 11111 00000 0011
Q ss_pred EEecCCCCCCCCcCCCccEEEeec-CCCCCHhhHHHHHhCCCCEEEE
Q psy8544 74 VFQKMKPEEIPWSQTGAEYIVEST-GVFKTKDTASAHLKGGAKKVII 119 (364)
Q Consensus 74 v~~~~~p~~~~w~~~gvDiV~est-G~f~s~e~a~~hl~aGakkVII 119 (364)
-+++.+ |. ..+||.+.|+ +..++.+.+..+.+.+|| +|+
T Consensus 302 ----i~~~~i-~~-~d~DVliPaAl~n~It~~~a~~i~~~~ak-iIv 341 (445)
T PRK09414 302 ----LEGGSP-WS-VPCDIALPCATQNELDEEDAKTLIANGVK-AVA 341 (445)
T ss_pred ----cCCccc-cc-cCCcEEEecCCcCcCCHHHHHHHHHcCCe-EEE
Confidence 112222 43 4799999998 777888888888777774 444
No 64
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.77 E-value=0.0033 Score=62.45 Aligned_cols=32 Identities=38% Similarity=0.575 Sum_probs=27.8
Q ss_pred ceEEEEccChHHHHHHHHHhcC--------CCcEEEEeCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHR--------NTPVVGINDP 34 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~--------~~~ivaInd~ 34 (364)
|||+|.|||.||+.++++|.++ ++.||+|.|.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds 40 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS 40 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence 4999999999999999998762 5789999875
No 65
>PRK11579 putative oxidoreductase; Provisional
Probab=96.69 E-value=0.0085 Score=59.32 Aligned_cols=92 Identities=15% Similarity=0.252 Sum_probs=62.9
Q ss_pred CceEEEEccChHHHH-HHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCC
Q psy8544 2 AYKIGINGFGRIGRL-VLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMK 79 (364)
Q Consensus 2 ~irVaInG~G~IGr~-vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~ 79 (364)
++||||+|+|.||+. .++++... ++++++|.|. +++...- +| . + +.++ .+
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~--~~~~~~~--~~-------~-------------~--~~~~--~~ 55 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSS--DATKVKA--DW-------P-------------T--VTVV--SE 55 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECC--CHHHHHh--hC-------C-------------C--Ccee--CC
Confidence 489999999999985 56766665 8999999986 5543220 11 0 0 0111 12
Q ss_pred CCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCC
Q psy8544 80 PEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPS 123 (364)
Q Consensus 80 p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps 123 (364)
.+++- .+.++|+|+-||+...-.+.+..++++|. .|++--|-
T Consensus 56 ~~ell-~~~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKPl 97 (346)
T PRK11579 56 PQHLF-NDPNIDLIVIPTPNDTHFPLAKAALEAGK-HVVVDKPF 97 (346)
T ss_pred HHHHh-cCCCCCEEEEcCCcHHHHHHHHHHHHCCC-eEEEeCCC
Confidence 22221 12369999999999999999999999984 67776664
No 66
>PLN02775 Probable dihydrodipicolinate reductase
Probab=96.62 E-value=0.0051 Score=59.91 Aligned_cols=100 Identities=21% Similarity=0.181 Sum_probs=63.7
Q ss_pred CCceEEEEc-cChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCC
Q psy8544 1 MAYKIGING-FGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMK 79 (364)
Q Consensus 1 m~irVaInG-~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~ 79 (364)
|++||+||| .|++||.+++++.+.+|++|+.-++..+- ++-.+.+.|..++++...|
T Consensus 10 ~~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~----------------------~~~~~~~~g~~v~~~~~~d 67 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAG----------------------VGVTVEVCGVEVRLVGPSE 67 (286)
T ss_pred CCCeEEEECCCChHHHHHHHHHhcCCCEEEEEecccccc----------------------ccccceeccceeeeecCcc
Confidence 368999999 89999999999888899999876641000 0011233444566642222
Q ss_pred CCCCC--CcCCCcc-EEEeecCCCCCHhhHHHHHhCCCCEEEEeCC
Q psy8544 80 PEEIP--WSQTGAE-YIVESTGVFKTKDTASAHLKGGAKKVIITAP 122 (364)
Q Consensus 80 p~~~~--w~~~gvD-iV~estG~f~s~e~a~~hl~aGakkVIIsap 122 (364)
.+..- -....+| ++||-|-.....+.++.+++.|..-||=|..
T Consensus 68 l~~~l~~~~~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG 113 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDYTLPDAVNDNAELYCKNGLPFVMGTTG 113 (286)
T ss_pred HHHHHHHhhccCCCEEEEECCChHHHHHHHHHHHHCCCCEEEECCC
Confidence 22110 0011478 8999887777778888888888865544443
No 67
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=96.54 E-value=0.01 Score=60.03 Aligned_cols=112 Identities=17% Similarity=0.180 Sum_probs=64.4
Q ss_pred ceEEEEc-cChHHHHHHHHHhcC--CCcEEEEeCCCCCHHHHHHHhh-cccccccCCcceeec--CCeEEECCEEEEEEe
Q psy8544 3 YKIGING-FGRIGRLVLREALHR--NTPVVGINDPHLSVDYLAYMLK-YDSTHGRFKGDVKTE--GNNIVVNGKKIAVFQ 76 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~--~~~ivaInd~~~~~~~~a~ll~-ydS~~g~~~~~v~~~--~~~l~i~gk~I~v~~ 76 (364)
.||+|.| +|.||+..++++... .|+|+++..- .+.+.++.+.+ |...|--........ ...+ .+..++++.
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~-~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l--~~~~~~v~~ 78 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAG-KNVELLAEQAREFRPKYVVVADEEAAKELKEAL--AAAGIEVLA 78 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcC-CCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhh--ccCCceEEE
Confidence 4899999 999999999998765 7999999731 26665554442 221110000000000 0011 111122332
Q ss_pred cC-CCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEE
Q psy8544 77 KM-KPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119 (364)
Q Consensus 77 ~~-~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVII 119 (364)
.. ...++- ....+|+|+.+.+.+...+..-.++++|. +|.+
T Consensus 79 G~~~~~~l~-~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK-~VaL 120 (385)
T PRK05447 79 GEEGLCELA-ALPEADVVVAAIVGAAGLLPTLAAIRAGK-RIAL 120 (385)
T ss_pred ChhHHHHHh-cCCCCCEEEEeCcCcccHHHHHHHHHCCC-cEEE
Confidence 21 111111 11269999999999988888888999984 4544
No 68
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.32 E-value=0.0091 Score=59.36 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=28.5
Q ss_pred CCceEEEEccChHHHHHHHHHhcC----------CCcEEEEeCC
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHR----------NTPVVGINDP 34 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~----------~~~ivaInd~ 34 (364)
|++||+|.|||.||+.++|+|.++ ++++++|.+.
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~ 45 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADR 45 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEec
Confidence 478999999999999999999863 4677777764
No 69
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.26 E-value=0.071 Score=50.26 Aligned_cols=129 Identities=22% Similarity=0.358 Sum_probs=72.5
Q ss_pred CceEEEEccChHHHHHHHHHhcCCCcEEEEeCCC--------CCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEE
Q psy8544 2 AYKIGINGFGRIGRLVLREALHRNTPVVGINDPH--------LSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIA 73 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~--------~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~ 73 (364)
.+||+|.|||.||+.+++.|.+.+..||+|.|.. .|++.+ +++-..+|.... ..+ .+ .
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l---~~~~~~~g~l~~---~~~------~~--~ 96 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPAL---LAYKKEHGSVLG---FPG------AE--R 96 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHH---HHHHHhcCCccc---CCC------ce--e
Confidence 4799999999999999999998899999999851 144433 322111221110 000 00 0
Q ss_pred EEecCCCCCCCCcCCCccEEEeec-CCCCCHhhHHHHHhCCCCEEEEeCCCCCCCeEEcccCccccCCCCCeEecCCchh
Q psy8544 74 VFQKMKPEEIPWSQTGAEYIVEST-GVFKTKDTASAHLKGGAKKVIITAPSKDAPMFVCGVNLDKYDPSHSVVSNASCTT 152 (364)
Q Consensus 74 v~~~~~p~~~~w~~~gvDiV~est-G~f~s~e~a~~hl~aGakkVIIsaps~d~p~vV~gVN~~~~~~~~~IISnaSCTT 152 (364)
-+++.+ |.. .+|++++|+ +..++.+.++. + .|+ +|+- .++.|+= ++.- +.+ .++.|+=.|....
T Consensus 97 ----~~~~~i-~~~-~~Dvlip~a~~~~i~~~~~~~-l--~a~-~I~e--gAN~~~t-~~a~-~~L-~~rGi~~~PD~~a 161 (227)
T cd01076 97 ----ITNEEL-LEL-DCDILIPAALENQITADNADR-I--KAK-IIVE--AANGPTT-PEAD-EIL-HERGVLVVPDILA 161 (227)
T ss_pred ----cCCccc-eee-cccEEEecCccCccCHHHHhh-c--eee-EEEe--CCCCCCC-HHHH-HHH-HHCCCEEEChHHh
Confidence 122222 543 789999998 55666665553 2 242 3332 2233331 3221 112 2466777777777
Q ss_pred hhHHhHH
Q psy8544 153 NCLAPLA 159 (364)
Q Consensus 153 n~Lap~l 159 (364)
|+=..+.
T Consensus 162 NaGGvi~ 168 (227)
T cd01076 162 NAGGVTV 168 (227)
T ss_pred cCcchhh
Confidence 7655543
No 70
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.23 E-value=0.0027 Score=52.94 Aligned_cols=82 Identities=28% Similarity=0.405 Sum_probs=48.1
Q ss_pred ccChHHHHHHHHHhcC----CCcEEEEeCCC--CCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 9 GFGRIGRLVLREALHR----NTPVVGINDPH--LSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 9 G~G~IGr~vlr~l~~~----~~~ivaInd~~--~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
|||.||+.+++.|.++ +++|++|-+.. .+.+..... .+.... .+.+.
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~-----------------~~~~~~----------~~~~~ 53 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASF-----------------PDEAFT----------TDLEE 53 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHH-----------------THSCEE----------SSHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhc-----------------cccccc----------CCHHH
Confidence 8999999999999876 68999998752 001100000 000000 11211
Q ss_pred -CCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeC
Q psy8544 83 -IPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITA 121 (364)
Q Consensus 83 -~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsa 121 (364)
+.| ..+|+|+|||+.....+..+..+++|. -||++
T Consensus 54 ~~~~--~~~dvvVE~t~~~~~~~~~~~~L~~G~--~VVt~ 89 (117)
T PF03447_consen 54 LIDD--PDIDVVVECTSSEAVAEYYEKALERGK--HVVTA 89 (117)
T ss_dssp HHTH--TT-SEEEE-SSCHHHHHHHHHHHHTTC--EEEES
T ss_pred HhcC--cCCCEEEECCCchHHHHHHHHHHHCCC--eEEEE
Confidence 111 158999999998888888889999888 45544
No 71
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.18 E-value=0.061 Score=50.37 Aligned_cols=33 Identities=18% Similarity=0.514 Sum_probs=30.6
Q ss_pred CceEEEEccChHHHHHHHHHhcCCCcEEEEeCC
Q psy8544 2 AYKIGINGFGRIGRLVLREALHRNTPVVGINDP 34 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~~~~ivaInd~ 34 (364)
..||+|-|||.||+.+++.|.+.+..+|+|.|.
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~ 55 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDP 55 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 369999999999999999999888999999997
No 72
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.92 E-value=0.042 Score=52.76 Aligned_cols=103 Identities=14% Similarity=0.204 Sum_probs=64.0
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCC--------CCHHHHHHHhhccccccc-CCcceeecCCeEEECCEEEE
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPH--------LSVDYLAYMLKYDSTHGR-FKGDVKTEGNNIVVNGKKIA 73 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~--------~~~~~~a~ll~ydS~~g~-~~~~v~~~~~~l~i~gk~I~ 73 (364)
.||+|-|||.||+.+++.|.+.+..||+|.|.. .|++.+..++.++...+. ... .. ..+.+- +
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~---~~---~~~~~a--~ 110 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSE---YA---KKYGTA--K 110 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHH---Hh---hcCCCC--E
Confidence 589999999999999999998899999998831 355555555554432221 000 00 001110 1
Q ss_pred EEecCCCCCCCCcCCCccEEEeec-CCCCCHhhHHHHHhCCCCEEEE
Q psy8544 74 VFQKMKPEEIPWSQTGAEYIVEST-GVFKTKDTASAHLKGGAKKVII 119 (364)
Q Consensus 74 v~~~~~p~~~~w~~~gvDiV~est-G~f~s~e~a~~hl~aGakkVII 119 (364)
. -+++++ |. ..+||.+=|+ +.-++.+.++.-.+.+|| +|+
T Consensus 111 ~---~~~~~~-~~-~~~DIliPcAl~~~I~~~na~~i~~~~ak-~I~ 151 (254)
T cd05313 111 Y---FEGKKP-WE-VPCDIAFPCATQNEVDAEDAKLLVKNGCK-YVA 151 (254)
T ss_pred E---eCCcch-hc-CCCcEEEeccccccCCHHHHHHHHHcCCE-EEE
Confidence 1 123332 53 4799988886 778888888766556773 445
No 73
>PLN02477 glutamate dehydrogenase
Probab=95.69 E-value=0.11 Score=53.26 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=30.2
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDP 34 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~ 34 (364)
.||+|-|||.||+.+++.|.+.+..||+|.|.
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~ 238 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDI 238 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence 58999999999999999999889999999986
No 74
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=95.64 E-value=0.046 Score=56.44 Aligned_cols=113 Identities=16% Similarity=0.191 Sum_probs=64.0
Q ss_pred ceEEEEc-cChHHHHHHHHHhcC--CCcEEEEeCCCCCHHHHHHHhh-cccccccCCcceeec--CCeEEECCE--EEEE
Q psy8544 3 YKIGING-FGRIGRLVLREALHR--NTPVVGINDPHLSVDYLAYMLK-YDSTHGRFKGDVKTE--GNNIVVNGK--KIAV 74 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~--~~~ivaInd~~~~~~~~a~ll~-ydS~~g~~~~~v~~~--~~~l~i~gk--~I~v 74 (364)
.||+|.| +|-||.+.++++.++ +|+++++..- .+.+.++...+ |...+--........ ...+ .+. .+.+
T Consensus 58 KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag-~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l--~~~~~~~~v 134 (454)
T PLN02696 58 KPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAG-SNVTLLADQVRKFKPKLVAVRNESLVDELKEAL--ADLDDKPEI 134 (454)
T ss_pred cEEEEecCCcHhhHHHHHHHHhCccccEEEEEECC-CCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhh--cCCCCCcEE
Confidence 5899999 899999999999876 7999999763 46666655332 221110000000000 0001 110 1223
Q ss_pred Ee-cCCCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEe
Q psy8544 75 FQ-KMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIIT 120 (364)
Q Consensus 75 ~~-~~~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIs 120 (364)
+. +.+..++- ....+|+|+.+.+.+...+..-.++++| |+|.+.
T Consensus 135 l~G~egl~~la-~~~evDiVV~AIvG~aGL~pTl~AIkaG-K~VALA 179 (454)
T PLN02696 135 IPGEEGIVEVA-RHPEAVTVVTGIVGCAGLKPTVAAIEAG-KDIALA 179 (454)
T ss_pred EECHHHHHHHH-cCCCCCEEEEeCccccchHHHHHHHHCC-CcEEEe
Confidence 22 11111111 1126899999998888877777788888 455553
No 75
>PRK10206 putative oxidoreductase; Provisional
Probab=95.62 E-value=0.026 Score=56.13 Aligned_cols=94 Identities=20% Similarity=0.201 Sum_probs=60.8
Q ss_pred CceEEEEccChHHHH-HHHHHhcC--CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecC
Q psy8544 2 AYKIGINGFGRIGRL-VLREALHR--NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKM 78 (364)
Q Consensus 2 ~irVaInG~G~IGr~-vlr~l~~~--~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~ 78 (364)
++||||+|+|++++. .++.+... ++++++|.|. +++.....-+|. + +.++ .
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~--~~~~~~~~~~~~--------------------~--~~~~--~ 54 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRR--HAKPEEQAPIYS--------------------H--IHFT--S 54 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcC--ChhHHHHHHhcC--------------------C--Cccc--C
Confidence 489999999998853 46666443 7999999996 443221111111 0 0111 1
Q ss_pred CCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCC
Q psy8544 79 KPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPS 123 (364)
Q Consensus 79 ~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps 123 (364)
+.+++ ..+.++|+|+-||....-.+.+...+++| |.|++--|-
T Consensus 55 ~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPl 97 (344)
T PRK10206 55 DLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLVEKPF 97 (344)
T ss_pred CHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEEecCC
Confidence 12222 12337899999999999999999999998 467776664
No 76
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.59 E-value=0.021 Score=52.75 Aligned_cols=95 Identities=22% Similarity=0.242 Sum_probs=57.3
Q ss_pred EEEEc-cChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCCC
Q psy8544 5 IGING-FGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEEI 83 (364)
Q Consensus 5 VaInG-~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~~ 83 (364)
|+|.| +|.+|+.++++|...+++|.++... .....+.-|+.. |-.++. + ...+++.+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~--~~~~~~~~l~~~-------------g~~vv~-~------d~~~~~~l 58 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRD--PSSDRAQQLQAL-------------GAEVVE-A------DYDDPESL 58 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESS--SHHHHHHHHHHT-------------TTEEEE-S-------TT-HHHH
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEec--cchhhhhhhhcc-------------cceEee-c------ccCCHHHH
Confidence 78999 8999999999999999999987664 222233333211 111110 0 11223332
Q ss_pred CCcCCCccEEEeecCCCCC------HhhHHHHHhCCCCEEEEeC
Q psy8544 84 PWSQTGAEYIVESTGVFKT------KDTASAHLKGGAKKVIITA 121 (364)
Q Consensus 84 ~w~~~gvDiV~estG~f~s------~e~a~~hl~aGakkVIIsa 121 (364)
.=.-.|+|.||.+++.... .....++.++|+|++|.|.
T Consensus 59 ~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 59 VAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp HHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred HHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEE
Confidence 2112389999999996522 2334567789999988754
No 77
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.51 E-value=0.043 Score=51.17 Aligned_cols=72 Identities=19% Similarity=0.343 Sum_probs=50.9
Q ss_pred CccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCCCCCeEEcccCcccc-CC-CCCeEecCCchhhhHHhHHHHHhh
Q psy8544 89 GAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSKDAPMFVCGVNLDKY-DP-SHSVVSNASCTTNCLAPLAKVIHD 164 (364)
Q Consensus 89 gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~d~p~vV~gVN~~~~-~~-~~~IISnaSCTTn~Lap~lk~L~d 164 (364)
++|+|||+|........+.+..++|.+.+-+ .|.+=.|-+||-+|.+.- +. .-+.| .|-..+-.|++....+
T Consensus 71 di~lvfdatsa~~h~~~a~~~ae~gi~~idl-tpaaigp~vvp~~n~~eh~~a~nvnmv---tcggqatipiv~avsr 144 (310)
T COG4569 71 DIDLVFDATSAGAHVKNAAALAEAGIRLIDL-TPAAIGPYVVPVVNLEEHVDALNVNMV---TCGGQATIPIVAAVSR 144 (310)
T ss_pred CcceEEeccccchhhcchHhHHhcCCceeec-chhccCCeeccccchHHhcCCCCcceE---eecCcccchhhhhhhh
Confidence 6889999999999998899999999954333 344447999999997653 32 33455 5666666666655544
No 78
>PLN02700 homoserine dehydrogenase family protein
Probab=95.20 E-value=0.038 Score=55.98 Aligned_cols=33 Identities=30% Similarity=0.494 Sum_probs=27.2
Q ss_pred CceEEEEccChHHHHHHHHHhcC---------CCcEEEEeCC
Q psy8544 2 AYKIGINGFGRIGRLVLREALHR---------NTPVVGINDP 34 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~---------~~~ivaInd~ 34 (364)
+++|+|.|+|.||+.+++++.++ ++.|++|.++
T Consensus 3 ~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s 44 (377)
T PLN02700 3 KIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDS 44 (377)
T ss_pred EEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECC
Confidence 58999999999999999997642 3678888764
No 79
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=95.18 E-value=0.11 Score=53.76 Aligned_cols=101 Identities=18% Similarity=0.353 Sum_probs=65.6
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCC--------CCHHHHHHHhhccccc-ccCCcceeecCCeEEECCEEEE
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPH--------LSVDYLAYMLKYDSTH-GRFKGDVKTEGNNIVVNGKKIA 73 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~--------~~~~~~a~ll~ydS~~-g~~~~~v~~~~~~l~i~gk~I~ 73 (364)
.||+|-|||.||+..++.|.+.+..||+|.|.. .|++.+.+++++-..+ |+... ..+. ..+.+.+
T Consensus 238 k~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~---~~~~--~~~a~~~- 311 (454)
T PTZ00079 238 KTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKE---YAKH--SSTAKYV- 311 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHh---hhhc--cCCcEEe-
Confidence 589999999999999999998899999999973 2466665666543221 21110 0000 0011111
Q ss_pred EEecCCCCCCCCcCCCccEEEeec-CCCCCHhhHHHHHhCCCCE
Q psy8544 74 VFQKMKPEEIPWSQTGAEYIVEST-GVFKTKDTASAHLKGGAKK 116 (364)
Q Consensus 74 v~~~~~p~~~~w~~~gvDiV~est-G~f~s~e~a~~hl~aGakk 116 (364)
+++. .|. ..+||.+=|+ +..++.+.|+.-++.|||-
T Consensus 312 -----~~~~-~~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~ 348 (454)
T PTZ00079 312 -----PGKK-PWE-VPCDIAFPCATQNEINLEDAKLLIKNGCKL 348 (454)
T ss_pred -----CCcC-ccc-CCccEEEeccccccCCHHHHHHHHHcCCeE
Confidence 1222 365 5799998876 7788888888777888853
No 80
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=95.04 E-value=0.041 Score=53.44 Aligned_cols=93 Identities=24% Similarity=0.198 Sum_probs=57.7
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEE-eCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEec---
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGI-NDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQK--- 77 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaI-nd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~--- 77 (364)
+||.||| +|++||.+++++.+.+|++|+. -+. .. ...+...+.|..|++...
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~----~~-------------------~~~~~~~~~g~~v~v~~~~~~ 57 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGG----EE-------------------EAENEAEVAGKEILLHGPSER 57 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhcCCCEEEeeEccc----cc-------------------cccchhhhcccceeeeccccc
Confidence 5899999 8999999999988779999875 221 00 001111223334555211
Q ss_pred -CCCCCCCCcCCCcc-EEEeecCCCCCHhhHHHHHhCCCCEEEEe
Q psy8544 78 -MKPEEIPWSQTGAE-YIVESTGVFKTKDTASAHLKGGAKKVIIT 120 (364)
Q Consensus 78 -~~p~~~~w~~~gvD-iV~estG~f~s~e~a~~hl~aGakkVIIs 120 (364)
.+++.+. +...| ++||-|-.....+.++.+++.|..-|+=+
T Consensus 58 ~~~l~~~~--~~~~d~VvIDFT~P~~~~~n~~~~~~~gv~~ViGT 100 (275)
T TIGR02130 58 EARIGEVF--AKYPELICIDYTHPSAVNDNAAFYGKHGIPFVMGT 100 (275)
T ss_pred cccHHHHH--hhcCCEEEEECCChHHHHHHHHHHHHCCCCEEEcC
Confidence 1222221 11267 99998877777788888888887544333
No 81
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.03 E-value=0.071 Score=50.05 Aligned_cols=99 Identities=30% Similarity=0.324 Sum_probs=60.4
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhh--cccccccCCcceeecCCeEEECCEEEEEEecCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLK--YDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKP 80 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~--ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p 80 (364)
|++.|+|.|++|+.+++.|.+++.+++.|.+ |.+.....++ ++. ..+..++....++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~---d~~~~~~~~~~~~~~-------------~~v~gd~t~~~~L----- 59 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDR---DEERVEEFLADELDT-------------HVVIGDATDEDVL----- 59 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEc---CHHHHHHHhhhhcce-------------EEEEecCCCHHHH-----
Confidence 4899999999999999999998889988865 5555444332 221 1111122111111
Q ss_pred CCCCCcCCCccEEEeecCCCCCH-hhHHHHHh-CCCCEEEEeCCCC
Q psy8544 81 EEIPWSQTGAEYIVESTGVFKTK-DTASAHLK-GGAKKVIITAPSK 124 (364)
Q Consensus 81 ~~~~w~~~gvDiV~estG~f~s~-e~a~~hl~-aGakkVIIsaps~ 124 (364)
.+.. -..+|+++-+||..... -.+..+++ .|.+++|.-+.+.
T Consensus 60 ~~ag--i~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 60 EEAG--IDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred HhcC--CCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 1111 12679999999985432 23344444 6888877766653
No 82
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=94.97 E-value=0.054 Score=54.20 Aligned_cols=86 Identities=27% Similarity=0.371 Sum_probs=53.9
Q ss_pred CceEEEEccChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceee----------cCCeEEECCE
Q psy8544 2 AYKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKT----------EGNNIVVNGK 70 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~----------~~~~l~i~gk 70 (364)
++|||+.|.|-.|+-++.....- +|++|+|.|...+....|| |..++.-...++. +.+++.
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~----~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~---- 88 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAY----DRAGGPKIEAVEADDASKMADAIEAGKIA---- 88 (438)
T ss_pred ceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHH----HHhcCCcccccccchhhHHHHHHhcCcEE----
Confidence 58999999999999888777644 9999999998655554443 5444442222221 123332
Q ss_pred EEEEEecCCCCCCCCcCCCccEEEeecCCCC
Q psy8544 71 KIAVFQKMKPEEIPWSQTGAEYIVESTGVFK 101 (364)
Q Consensus 71 ~I~v~~~~~p~~~~w~~~gvDiV~estG~f~ 101 (364)
+. .|.+.+ .....+|+++|+||.-.
T Consensus 89 ---vT--~D~~~i-~~~~~IdvIIdATG~p~ 113 (438)
T COG4091 89 ---VT--DDAELI-IANDLIDVIIDATGVPE 113 (438)
T ss_pred ---Ee--cchhhh-hcCCcceEEEEcCCCcc
Confidence 32 122211 22337999999998743
No 83
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=94.96 E-value=0.018 Score=50.73 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=27.3
Q ss_pred EEEEc-cChHHHHHHHHHhcCCCcEEEEeCC
Q psy8544 5 IGING-FGRIGRLVLREALHRNTPVVGINDP 34 (364)
Q Consensus 5 VaInG-~G~IGr~vlr~l~~~~~~ivaInd~ 34 (364)
|.|.| +|.+|+.+++.|.+++.+|+++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~ 31 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRS 31 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecC
Confidence 68999 8999999999999999999988764
No 84
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.87 E-value=0.063 Score=52.17 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=27.9
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
|||.|.| +|.||+.+++.|.+++.+|+++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R 32 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVR 32 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEc
Confidence 3899999 999999999999988889988865
No 85
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=94.68 E-value=0.16 Score=49.47 Aligned_cols=96 Identities=19% Similarity=0.214 Sum_probs=63.7
Q ss_pred CCceEEEEccChHHH-HHHHHHhcC-C-CcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEec
Q psy8544 1 MAYKIGINGFGRIGR-LVLREALHR-N-TPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQK 77 (364)
Q Consensus 1 m~irVaInG~G~IGr-~vlr~l~~~-~-~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~ 77 (364)
|++||||+|.|.+++ ..+.++.+. + +++++|-|. +++....+.+ .||- . ..+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~--~~~~a~~~a~---~~~~---~---------------~~~-- 56 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDR--DPERAEAFAE---EFGI---A---------------KAY-- 56 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecC--CHHHHHHHHH---HcCC---C---------------ccc--
Confidence 368999999997765 577888776 5 799999886 6665333321 1110 0 011
Q ss_pred CCCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCC
Q psy8544 78 MKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPS 123 (364)
Q Consensus 78 ~~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps 123 (364)
.+.+++- .+..+|+|+=||....-.+.+..++++|. .|++--|-
T Consensus 57 ~~~~~ll-~~~~iD~V~Iatp~~~H~e~~~~AL~aGk-hVl~EKPl 100 (342)
T COG0673 57 TDLEELL-ADPDIDAVYIATPNALHAELALAALEAGK-HVLCEKPL 100 (342)
T ss_pred CCHHHHh-cCCCCCEEEEcCCChhhHHHHHHHHhcCC-EEEEcCCC
Confidence 1121111 11258999999999999999999999987 56665563
No 86
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=94.66 E-value=0.074 Score=49.29 Aligned_cols=94 Identities=18% Similarity=0.318 Sum_probs=59.5
Q ss_pred ceEEEEccChHHHHHHHHHh-cC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCC
Q psy8544 3 YKIGINGFGRIGRLVLREAL-HR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKP 80 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~-~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p 80 (364)
.||+|.|+|.+|+.+++.+. .. +++++++-|. +++.. | .. ++|.++ ....+.
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~--d~~~~----------~----------~~--i~g~~v--~~~~~l 138 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV--DPEKI----------G----------TK--IGGIPV--YHIDEL 138 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC--Chhhc----------C----------CE--eCCeEE--cCHHHH
Confidence 68999999999999998643 23 8999998775 33211 0 11 123222 111122
Q ss_pred CCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCC
Q psy8544 81 EEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPS 123 (364)
Q Consensus 81 ~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps 123 (364)
.++ ..+.++|+|+.|++.....+.....+++|.+.++...|-
T Consensus 139 ~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~ 180 (213)
T PRK05472 139 EEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPV 180 (213)
T ss_pred HHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCce
Confidence 222 123479999999988776666777788998766555554
No 87
>PRK14031 glutamate dehydrogenase; Provisional
Probab=94.55 E-value=0.16 Score=52.50 Aligned_cols=99 Identities=16% Similarity=0.335 Sum_probs=61.5
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCC--------CCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEE
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPH--------LSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAV 74 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~--------~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v 74 (364)
.||+|-|||.||...++.|.+.+-.||+|+|.. .|++.+.|+.++... ..+.+....+. . | ...
T Consensus 229 ~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~---~~~~v~~~~~~--~-g--a~~ 300 (444)
T PRK14031 229 KVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNL---YRGRIREYAEK--Y-G--CKY 300 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhh---cCCchhhhHhh--c-C--CEE
Confidence 589999999999999999998899999999911 266666555443321 01111100000 0 1 111
Q ss_pred EecCCCCCCCCcCCCccEEEeec-CCCCCHhhHHHHHhCCC
Q psy8544 75 FQKMKPEEIPWSQTGAEYIVEST-GVFKTKDTASAHLKGGA 114 (364)
Q Consensus 75 ~~~~~p~~~~w~~~gvDiV~est-G~f~s~e~a~~hl~aGa 114 (364)
. ++++ .|. ..+|+.+=|+ +..++.+.++.-...|+
T Consensus 301 i---~~d~-~~~-~~cDIliPaAl~n~I~~~na~~l~a~g~ 336 (444)
T PRK14031 301 V---EGAR-PWG-EKGDIALPSATQNELNGDDARQLVANGV 336 (444)
T ss_pred c---CCcc-ccc-CCCcEEeecccccccCHHHHHHHHhcCC
Confidence 1 1222 354 4789988876 77788888887655567
No 88
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.42 E-value=0.05 Score=48.96 Aligned_cols=32 Identities=38% Similarity=0.621 Sum_probs=27.8
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDP 34 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~ 34 (364)
.+|||+|||+|||.+++.|...+++|.+.+..
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~ 68 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRS 68 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEeccc
Confidence 48999999999999999998779999888764
No 89
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.21 E-value=0.54 Score=45.63 Aligned_cols=147 Identities=12% Similarity=0.153 Sum_probs=76.6
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhc-----cc--ccccCCcceeecCCeEEECCEEEEEEe
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKY-----DS--THGRFKGDVKTEGNNIVVNGKKIAVFQ 76 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~y-----dS--~~g~~~~~v~~~~~~l~i~gk~I~v~~ 76 (364)
||||+|.|.+|+.++..+...+++|+..+- +++.+....++ +. ..|...... ....+ ..|++.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~---~~~~~~~~~~~i~~~~~~~~~~g~~~~~~--~~~~~----~~l~~~- 76 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFET---TEELATAGRNRIEKSLERAVSRGKLTERE--RDAAL----ARLRFT- 76 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEEC---CHHHHHHHHHHHHHHHHHHHhcccCChhh--HHHHH----hCeEee-
Confidence 899999999999999988877888766543 45554442210 00 011111100 00000 122232
Q ss_pred cCCCCCCCCcCCCccEEEeecCCCCCHhhH-----HHHH-hCCCCEEEEeCCCC----------CCC--e-EEcccCccc
Q psy8544 77 KMKPEEIPWSQTGAEYIVESTGVFKTKDTA-----SAHL-KGGAKKVIITAPSK----------DAP--M-FVCGVNLDK 137 (364)
Q Consensus 77 ~~~p~~~~w~~~gvDiV~estG~f~s~e~a-----~~hl-~aGakkVIIsaps~----------d~p--~-vV~gVN~~~ 137 (364)
.+.+.+ .++|+|+||.......+.. +.+. ..++ ++.|++|. ..| + -+--.|+-.
T Consensus 77 -~~~~~~----~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~ 149 (286)
T PRK07819 77 -TDLGDF----ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVP 149 (286)
T ss_pred -CCHHHh----CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhhcCCCccEEEEecCCCcc
Confidence 333333 3899999998655443222 2333 3455 88888774 122 1 112233322
Q ss_pred cCCCCCeEecCCchhhhHHhHHHHHhhhcC
Q psy8544 138 YDPSHSVVSNASCTTNCLAPLAKVIHDNFE 167 (364)
Q Consensus 138 ~~~~~~IISnaSCTTn~Lap~lk~L~d~fG 167 (364)
+.+--.||..+.++-..++.+...+.+..|
T Consensus 150 ~~~lvElv~~~~T~~~~~~~~~~~~~~~lg 179 (286)
T PRK07819 150 VLPLVELVPTLVTSEATVARAEEFASDVLG 179 (286)
T ss_pred cCceEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence 222234666666666666666555554444
No 90
>PRK14030 glutamate dehydrogenase; Provisional
Probab=94.16 E-value=0.27 Score=50.94 Aligned_cols=101 Identities=18% Similarity=0.285 Sum_probs=65.1
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCC--------CCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEE
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPH--------LSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAV 74 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~--------~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v 74 (364)
.||+|-|||.||+.+++.|.+.+..||+|+|.. .|++.+.+|++|-..+|...... . . .+.|-. .+
T Consensus 229 ~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~--~-~--~~~ga~-~i 302 (445)
T PRK14030 229 KTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPY--A-E--KFPGST-FF 302 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHH--H-h--cCCCCE-Ec
Confidence 589999999999999999988899999975532 45666667776644333210000 0 0 111110 11
Q ss_pred EecCCCCCCCCcCCCccEEEeec-CCCCCHhhHHHHHhCCCC
Q psy8544 75 FQKMKPEEIPWSQTGAEYIVEST-GVFKTKDTASAHLKGGAK 115 (364)
Q Consensus 75 ~~~~~p~~~~w~~~gvDiV~est-G~f~s~e~a~~hl~aGak 115 (364)
+++++ |. ..+||.+=|+ +..++.+.++.-.+.+||
T Consensus 303 ----~~~~~-~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak 338 (445)
T PRK14030 303 ----AGKKP-WE-QKVDIALPCATQNELNGEDADKLIKNGVL 338 (445)
T ss_pred ----CCccc-ee-ccccEEeeccccccCCHHHHHHHHHcCCe
Confidence 12222 54 4799998876 888888888877777784
No 91
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=93.67 E-value=0.053 Score=60.15 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=27.7
Q ss_pred CCceEEEEccChHHHHHHHHHhcC---------CCcEEEEeCC
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHR---------NTPVVGINDP 34 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~---------~~~ivaInd~ 34 (364)
|+++|+|.|||.||+.++++|.++ ++.|++|.+.
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s 506 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANS 506 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 368999999999999999998653 4678888653
No 92
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=93.66 E-value=0.14 Score=47.18 Aligned_cols=95 Identities=20% Similarity=0.311 Sum_probs=65.2
Q ss_pred CceEEEEccChHHHHHHHHHhc-C-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCC
Q psy8544 2 AYKIGINGFGRIGRLVLREALH-R-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMK 79 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~-~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~ 79 (364)
+.+|.|+|.|.+||.++.--+. + +|.|+++=|. +++.+ |+.-+ + ++|..-.+
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv--~~~~V----------G~~~~------------~--v~V~~~d~ 137 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDV--DPDKV----------GTKIG------------D--VPVYDLDD 137 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhcCceEEEEecC--CHHHh----------CcccC------------C--eeeechHH
Confidence 3689999999999999876554 3 8999999886 55421 32211 1 23322222
Q ss_pred CCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCC
Q psy8544 80 PEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPS 123 (364)
Q Consensus 80 p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps 123 (364)
.+.+ -.+.++|+++-|.+...+.+-|..-.++|.|-+.--+|.
T Consensus 138 le~~-v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtPv 180 (211)
T COG2344 138 LEKF-VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTPV 180 (211)
T ss_pred HHHH-HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccce
Confidence 2222 123479999999999888888888999999876655664
No 93
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=93.60 E-value=0.24 Score=47.06 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=26.5
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
+|.|.| +|.||+.+++.|.+++.+|.++..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R 31 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASR 31 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeC
Confidence 588999 899999999999988888887765
No 94
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=93.54 E-value=0.27 Score=47.29 Aligned_cols=39 Identities=26% Similarity=0.286 Sum_probs=30.4
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHH
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYM 44 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~l 44 (364)
+||+|+|.|.||..+.+.|.+++.+|.+++. +++.+..+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~---~~~~~~~a 39 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSR---RESTCERA 39 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEEC---CHHHHHHH
Confidence 3899999999999999999887888877753 45544443
No 95
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=93.31 E-value=0.057 Score=59.84 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=27.3
Q ss_pred CceEEEEccChHHHHHHHHHhcC----------CCcEEEEeCC
Q psy8544 2 AYKIGINGFGRIGRLVLREALHR----------NTPVVGINDP 34 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~----------~~~ivaInd~ 34 (364)
+++|+|.|||.||+.++++|.++ ++.|++|.+.
T Consensus 458 ~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s 500 (810)
T PRK09466 458 RIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDS 500 (810)
T ss_pred eEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeC
Confidence 58999999999999999998642 4677888654
No 96
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.26 E-value=0.88 Score=44.62 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=28.6
Q ss_pred CCceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
|++||+|+|.|.||..+...|.+.+.+|..++.
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r 33 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGR 33 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCCcEEEEec
Confidence 778999999999999999999887777766654
No 97
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=93.15 E-value=0.4 Score=44.24 Aligned_cols=31 Identities=42% Similarity=0.595 Sum_probs=28.7
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
|||||.| .|++|..+++-+..|+-|++||-.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivR 32 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVR 32 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEe
Confidence 5999999 899999999999999999999965
No 98
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=92.84 E-value=0.32 Score=49.40 Aligned_cols=110 Identities=16% Similarity=0.234 Sum_probs=62.6
Q ss_pred ceEEEEc-cChHHHHHHHHHhcC--CCcEEEEeCCCCCHHHHHHHhh-cccccccCCcceeecCCe----EE--EC--CE
Q psy8544 3 YKIGING-FGRIGRLVLREALHR--NTPVVGINDPHLSVDYLAYMLK-YDSTHGRFKGDVKTEGNN----IV--VN--GK 70 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~--~~~ivaInd~~~~~~~~a~ll~-ydS~~g~~~~~v~~~~~~----l~--i~--gk 70 (364)
.||+|.| ||-||++.++++..+ +|+|+++..- .+.+.++...+ |...+ +-..+.. +. .. |.
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~-~n~~~L~~q~~~f~p~~------v~i~d~~~~~~l~~~l~~~~~ 74 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAG-KNVALMVEQILEFRPKF------VAIDDEASLKDLKTMLQQQGS 74 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcC-CCHHHHHHHHHHcCCCE------EEEcCHHHHHHHHHHhhcCCC
Confidence 4899999 999999999998765 6999999763 46665555443 21111 1111100 00 01 11
Q ss_pred EEEEEecCC-CCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeC
Q psy8544 71 KIAVFQKMK-PEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITA 121 (364)
Q Consensus 71 ~I~v~~~~~-p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsa 121 (364)
.++++...+ ..++- ....+|+|+-+.-.+....-.-.++++| |++-+.|
T Consensus 75 ~~~v~~G~~~l~~l~-~~~~~D~vv~AivG~aGL~pt~~Ai~~g-k~iaLAN 124 (389)
T TIGR00243 75 RTEVLVGEEGICEMA-ALEDVDQVMNAIVGAAGLLPTLAAIRAG-KTIALAN 124 (389)
T ss_pred CcEEEECHHHHHHHH-cCCCCCEEEEhhhcHhhHHHHHHHHHCC-CcEEEec
Confidence 123332211 11110 1125899999987777776666778888 4555533
No 99
>PLN00016 RNA-binding protein; Provisional
Probab=92.83 E-value=0.23 Score=49.53 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=29.1
Q ss_pred CCceEEEE----c-cChHHHHHHHHHhcCCCcEEEEeCC
Q psy8544 1 MAYKIGIN----G-FGRIGRLVLREALHRNTPVVGINDP 34 (364)
Q Consensus 1 m~irVaIn----G-~G~IGr~vlr~l~~~~~~ivaInd~ 34 (364)
|+.||.|. | +|.||+.+++.|.+++.+|+++...
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 45689999 8 9999999999999888888888653
No 100
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=92.68 E-value=0.44 Score=48.10 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=25.5
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEe
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
.||+|+| +|.+|+.+.+.|...+.+|...+
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d 129 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILE 129 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCeEEEeC
Confidence 6899999 99999999999988777765443
No 101
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.64 E-value=1.6 Score=42.88 Aligned_cols=95 Identities=21% Similarity=0.139 Sum_probs=52.4
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEEI 83 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~~ 83 (364)
+|.|.|.|.||...++++...+..++++.....+++.+..+.++ | .+ . ++-+.-.+ .+ ..
T Consensus 175 ~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~----G---a~-------~-v~~~~~~~-~~---~~- 234 (355)
T cd08230 175 RALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEEL----G---AT-------Y-VNSSKTPV-AE---VK- 234 (355)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc----C---CE-------E-ecCCccch-hh---hh-
Confidence 68999999999999988877777888775321134443322221 1 01 0 11000000 00 00
Q ss_pred CCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEe
Q psy8544 84 PWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIIT 120 (364)
Q Consensus 84 ~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIs 120 (364)
.+ .++|+||||+|.....+.+-..++.|.+-+++.
T Consensus 235 ~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 235 LV--GEFDLIIEATGVPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred hc--CCCCEEEECcCCHHHHHHHHHHccCCcEEEEEe
Confidence 12 379999999996544455556666665333343
No 102
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=92.60 E-value=0.22 Score=48.55 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=26.9
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
-+|+|.|+|+||+.+++.|...+.+|...+.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R 182 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGAR 182 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeC
Confidence 3799999999999999999888778776665
No 103
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.56 E-value=0.65 Score=42.72 Aligned_cols=35 Identities=14% Similarity=0.418 Sum_probs=28.9
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHH
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDY 40 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~ 40 (364)
.+|+|.|||++|+.+.+.|.+.+.+|+ +.|. +++.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vv-v~D~--~~~~ 63 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLI-VADI--NEEA 63 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEE-EEcC--CHHH
Confidence 589999999999999999998888988 4554 4443
No 104
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.40 E-value=0.38 Score=47.93 Aligned_cols=99 Identities=25% Similarity=0.297 Sum_probs=53.4
Q ss_pred eEEEEccChHHHHHHHHHhcCC-CcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECC-EEEEEEecCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRN-TPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNG-KKIAVFQKMKPE 81 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~-~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~g-k~I~v~~~~~p~ 81 (364)
+|+|.|.|.||.+.+.++.-.+ -+|+++ |. +++.++...++. +....++. +.... ....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~-d~--~~~Rl~~A~~~~-------------g~~~~~~~~~~~~~---~~~~ 231 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV-DR--SPERLELAKEAG-------------GADVVVNPSEDDAG---AEIL 231 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe-CC--CHHHHHHHHHhC-------------CCeEeecCccccHH---HHHH
Confidence 6999999999988866665554 455555 65 566665544322 11122221 11000 0000
Q ss_pred CCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCC
Q psy8544 82 EIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAP 122 (364)
Q Consensus 82 ~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsap 122 (364)
.+..+ .|+|+||||+|...+.+.+-..++.|-.-+++.-+
T Consensus 232 ~~t~g-~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 232 ELTGG-RGADVVIEAVGSPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred HHhCC-CCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEecc
Confidence 11111 37999999999655455555566555544444444
No 105
>PRK08507 prephenate dehydrogenase; Validated
Probab=92.23 E-value=0.49 Score=45.31 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=28.1
Q ss_pred ceEEEEccChHHHHHHHHHhcCC--CcEEEEeCCCCCHHHHHHH
Q psy8544 3 YKIGINGFGRIGRLVLREALHRN--TPVVGINDPHLSVDYLAYM 44 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~--~~ivaInd~~~~~~~~a~l 44 (364)
+||+|+|+|.+|..+.+.|.+.+ .+|.+.+ . +++.+..+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d-~--~~~~~~~~ 41 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYD-H--NELHLKKA 41 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEc-C--CHHHHHHH
Confidence 38999999999999999998764 3565553 3 45544333
No 106
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.20 E-value=1.7 Score=42.10 Aligned_cols=84 Identities=20% Similarity=0.173 Sum_probs=49.3
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEEI 83 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~~ 83 (364)
+|.|+|.|.||...++++..++...+.+-+. +.+.+....++ ..++- .+.
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~--~~~rl~~a~~~-----------------~~i~~--------~~~--- 196 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAAGGSPPAVWET--NPRRRDGATGY-----------------EVLDP--------EKD--- 196 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCC--CHHHHHhhhhc-----------------cccCh--------hhc---
Confidence 6899999999999998887777765444443 34332211110 01110 000
Q ss_pred CCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEE
Q psy8544 84 PWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119 (364)
Q Consensus 84 ~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVII 119 (364)
...++|+||||+|.-...+.+-..++.|.+-+++
T Consensus 197 --~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 197 --PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred --cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEE
Confidence 1237899999999755555555566666543333
No 107
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=92.09 E-value=0.17 Score=49.83 Aligned_cols=30 Identities=37% Similarity=0.397 Sum_probs=25.9
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEe
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
.+|||+|||+|||.+++.+...+++|.+.+
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d 175 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYS 175 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEEC
Confidence 379999999999999999876688987664
No 108
>PRK06487 glycerate dehydrogenase; Provisional
Probab=91.92 E-value=0.18 Score=49.74 Aligned_cols=31 Identities=26% Similarity=0.210 Sum_probs=26.6
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
-+|||+|+|+|||.+++.+...+++|++.+.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~ 179 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQL 179 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECC
Confidence 3799999999999999999766899877653
No 109
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=91.83 E-value=0.58 Score=53.24 Aligned_cols=91 Identities=11% Similarity=0.056 Sum_probs=60.5
Q ss_pred ceEEEEccChHHHHHHHHHhcC-CCc------------EEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECC
Q psy8544 3 YKIGINGFGRIGRLVLREALHR-NTP------------VVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNG 69 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~-~~~------------ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~g 69 (364)
.||+|+|.|+||+..++.|.+. +.+ +|+|.|+ +++....+.+- ++ +-
T Consensus 570 ~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~--~~~~a~~la~~------~~------------~~ 629 (1042)
T PLN02819 570 QNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL--YLKDAKETVEG------IE------------NA 629 (1042)
T ss_pred CcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC--CHHHHHHHHHh------cC------------CC
Confidence 4899999999999999999876 655 7888886 55544333310 00 00
Q ss_pred EEEEEEecCCCCCCC-CcCCCccEEEeecCCCCCHhhHHHHHhCCCC
Q psy8544 70 KKIAVFQKMKPEEIP-WSQTGAEYIVESTGVFKTKDTASAHLKGGAK 115 (364)
Q Consensus 70 k~I~v~~~~~p~~~~-w~~~gvDiV~estG~f~s~e~a~~hl~aGak 115 (364)
+.+.+ ...|++++. +- .++|+|+.|++.....+-+..++++|+-
T Consensus 630 ~~v~l-Dv~D~e~L~~~v-~~~DaVIsalP~~~H~~VAkaAieaGkH 674 (1042)
T PLN02819 630 EAVQL-DVSDSESLLKYV-SQVDVVISLLPASCHAVVAKACIELKKH 674 (1042)
T ss_pred ceEEe-ecCCHHHHHHhh-cCCCEEEECCCchhhHHHHHHHHHcCCC
Confidence 11122 012233221 10 2699999999999999999999999973
No 110
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=91.70 E-value=0.68 Score=45.45 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=23.6
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC-cEEEEe
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT-PVVGIN 32 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~-~ivaIn 32 (364)
.||+|+|+|.||+.+++.|...+. +|..+|
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~ 209 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKGVAEITIAN 209 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcCCCEEEEEe
Confidence 589999999999999999987643 444444
No 111
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=91.56 E-value=0.24 Score=49.60 Aligned_cols=94 Identities=20% Similarity=0.320 Sum_probs=54.7
Q ss_pred EEEEccChHHHHHHHHHhcC-CC-cEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 5 IGINGFGRIGRLVLREALHR-NT-PVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 5 VaInG~G~IGr~vlr~l~~~-~~-~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
|.|.|.|.||+.+++.|.++ ++ +|+ |.+- +.+.+..+.+. . .+..+.. +.+ ...+++.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~-va~r--~~~~~~~~~~~--~----------~~~~~~~----~~~-d~~~~~~ 60 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVT-VADR--NPEKAERLAEK--L----------LGDRVEA----VQV-DVNDPES 60 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEE-EEES--SHHHHHHHHT--------------TTTTEEE----EE---TTTHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEE-EEEC--CHHHHHHHHhh--c----------cccceeE----EEE-ecCCHHH
Confidence 68999999999999999988 56 544 4443 56665555421 0 0111111 111 1122222
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEe
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIIT 120 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIs 120 (364)
+.=--.+.|+|+.|+|.|....-++..+++|+ -.++
T Consensus 61 l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~--~yvD 96 (386)
T PF03435_consen 61 LAELLRGCDVVINCAGPFFGEPVARACIEAGV--HYVD 96 (386)
T ss_dssp HHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT---EEEE
T ss_pred HHHHHhcCCEEEECCccchhHHHHHHHHHhCC--Ceec
Confidence 11001367999999999988888899999999 4566
No 112
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.45 E-value=1.9 Score=41.00 Aligned_cols=136 Identities=14% Similarity=0.207 Sum_probs=71.7
Q ss_pred eEEEEccChHHHHHHHHHhcCCCc-EEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTP-VVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~-ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
+|.|.|.|.||...++++...+.. |+++ +. +.+.+..+.++. - ...++.+.. . .....
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~-~~--~~~r~~~a~~~G----a----------~~~i~~~~~---~-~~~~~ 181 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAAGAARVVAA-DP--SPDRRELALSFG----A----------TALAEPEVL---A-ERQGG 181 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEE-CC--CHHHHHHHHHcC----C----------cEecCchhh---H-HHHHH
Confidence 689999999999999988777776 6666 43 344443332221 0 011111100 0 00000
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCCCCCeEEcccCcccc-CCCCCeEecCCchhhhHHhHHHH
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSKDAPMFVCGVNLDKY-DPSHSVVSNASCTTNCLAPLAKV 161 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~d~p~vV~gVN~~~~-~~~~~IISnaSCTTn~Lap~lk~ 161 (364)
+. ...++|+||||+|.-...+.+-..++.|.+-+++.......+ ..+|...+ ..+..|+..-..+...+.-++..
T Consensus 182 ~~-~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~---~~i~~~~~~~~~~~i~g~~~~~~~~~~~~~~~ 257 (280)
T TIGR03366 182 LQ-NGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGP---VALDPEQVVRRWLTIRGVHNYEPRHLDQAVRF 257 (280)
T ss_pred Hh-CCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCc---eeeCHHHHHhCCcEEEecCCCCHHHHHHHHHH
Confidence 11 113799999999876555666667777664444443322112 12333332 22445665544444556666666
Q ss_pred Hhh
Q psy8544 162 IHD 164 (364)
Q Consensus 162 L~d 164 (364)
|.+
T Consensus 258 l~~ 260 (280)
T TIGR03366 258 LAA 260 (280)
T ss_pred HHh
Confidence 654
No 113
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=91.45 E-value=0.44 Score=37.72 Aligned_cols=40 Identities=30% Similarity=0.389 Sum_probs=32.3
Q ss_pred eEEEEccChHHHHHHHHHhcCC---CcEEEEeCCCCCHHHHHHHh
Q psy8544 4 KIGINGFGRIGRLVLREALHRN---TPVVGINDPHLSVDYLAYML 45 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~---~~ivaInd~~~~~~~~a~ll 45 (364)
||||.|+|.+|..+++-|.+++ -+|..+++. +++...++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r--~~~~~~~~~ 43 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR--SPEKAAELA 43 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES--SHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC--cHHHHHHHH
Confidence 7999999999999999998886 777656454 677776665
No 114
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=91.38 E-value=0.46 Score=45.41 Aligned_cols=105 Identities=11% Similarity=0.075 Sum_probs=56.2
Q ss_pred CceEEEEccChHHHHHHHHHhcCC-----------CcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCE
Q psy8544 2 AYKIGINGFGRIGRLVLREALHRN-----------TPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGK 70 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~~-----------~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk 70 (364)
..||.|+|.|-+|..+++.|...+ ++|+.+..-.++...+-+-+-+.+.-|+.+..+-.+ .--.+++-
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~-ri~~~~~~ 89 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLVN-RLNQAMGT 89 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHHH-HHHhccCc
Confidence 479999999999999999987431 244434311122222222222344457665543221 11112233
Q ss_pred EEEEEecC-CCCCCCCcCCCccEEEeecCCCCCHhhHHHHH
Q psy8544 71 KIAVFQKM-KPEEIPWSQTGAEYIVESTGVFKTKDTASAHL 110 (364)
Q Consensus 71 ~I~v~~~~-~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl 110 (364)
.+....++ +++.+ + .+.|+|++|+..+.++...-..+
T Consensus 90 ~i~a~~~~~~~~~~-~--~~~DiVi~avDn~~aR~~l~~~~ 127 (244)
T TIGR03736 90 DWTAHPERVERSST-L--HRPDIVIGCVDNRAARLAILRAF 127 (244)
T ss_pred eEEEEEeeeCchhh-h--cCCCEEEECCCCHHHHHHHHHHH
Confidence 33333221 22222 2 26899999999988876554333
No 115
>PRK06932 glycerate dehydrogenase; Provisional
Probab=91.35 E-value=0.23 Score=48.99 Aligned_cols=30 Identities=27% Similarity=0.234 Sum_probs=25.9
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEe
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
.+|||+|+|+|||.+.+.+...+++|++.+
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~ 177 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAE 177 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEEC
Confidence 489999999999999999876688887664
No 116
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.21 E-value=0.57 Score=45.77 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=26.4
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
-||.|.|+|++|+.+++.|...+.+|...+.
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r 183 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGAR 183 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 4899999999999999999877777766654
No 117
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=91.06 E-value=0.78 Score=42.92 Aligned_cols=91 Identities=19% Similarity=0.075 Sum_probs=55.8
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
++++|.|+|.||..+.+.+...+.||+-.+.- .++.++.+.+|=. -. |+-. ..++.
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r--~~~~~~a~a~~l~-------------~~-------i~~~--~~~dA 57 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSR--GPKALAAAAAALG-------------PL-------ITGG--SNEDA 57 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCC--ChhHHHHHHHhhc-------------cc-------cccC--ChHHH
Confidence 69999999999999999988778887766442 5665555544311 00 1111 11222
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHh-CCCCEEEEeCC
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLK-GGAKKVIITAP 122 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~-aGakkVIIsap 122 (364)
. ...|+||-+..-.--.+-++.+.. -| .|+|||..
T Consensus 58 ~----~~aDVVvLAVP~~a~~~v~~~l~~~~~-~KIvID~t 93 (211)
T COG2085 58 A----ALADVVVLAVPFEAIPDVLAELRDALG-GKIVIDAT 93 (211)
T ss_pred H----hcCCEEEEeccHHHHHhHHHHHHHHhC-CeEEEecC
Confidence 2 257999998875444444444333 23 57999765
No 118
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=91.00 E-value=0.22 Score=40.29 Aligned_cols=91 Identities=20% Similarity=0.327 Sum_probs=58.4
Q ss_pred CceEEEEccChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEE-ecCC
Q psy8544 2 AYKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVF-QKMK 79 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~-~~~~ 79 (364)
+.||+|.|.|+.|+.++...++. ++.++++-|. +++ +. + -.++| ++++ ...+
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv--~~~-------------~~-------G--~~i~g--ipV~~~~~~ 56 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDV--DPE-------------KI-------G--KEIGG--IPVYGSMDE 56 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEE--CTT-------------TT-------T--SEETT--EEEESSHHH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEc--CCC-------------cc-------C--cEECC--EEeeccHHH
Confidence 35899999999999887555555 8999888764 222 11 1 11334 3444 1111
Q ss_pred CCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCC
Q psy8544 80 PEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAP 122 (364)
Q Consensus 80 p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsap 122 (364)
..+. - ++|+++-|.+.....+.+...+++|.|-+++-+|
T Consensus 57 l~~~--~--~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nft~ 95 (96)
T PF02629_consen 57 LEEF--I--EIDIAIITVPAEAAQEVADELVEAGIKGIVNFTP 95 (96)
T ss_dssp HHHH--C--TTSEEEEES-HHHHHHHHHHHHHTT-SEEEEESS
T ss_pred hhhh--h--CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1111 1 3899999998877788888899999998776544
No 119
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=90.91 E-value=2.6 Score=44.16 Aligned_cols=37 Identities=24% Similarity=0.118 Sum_probs=29.1
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHH
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLA 42 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a 42 (364)
+||||+|.|.+|..++..+...+++|+.. |. +++.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~-D~--~~~~~~ 41 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVF-DP--HPEAER 41 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEE-eC--CHHHHH
Confidence 58999999999999999998888887655 43 455443
No 120
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.89 E-value=1.1 Score=45.66 Aligned_cols=97 Identities=18% Similarity=0.211 Sum_probs=60.7
Q ss_pred ceEEEEccChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPE 81 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~ 81 (364)
+||-|.|.|.||+.+++.|..+ +.+|..... +++..+... ++..++ + +.+.++ ..+.+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdR---s~~~~~~i~--~~~~~~----v----~~~~vD--------~~d~~ 60 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADR---SKEKCARIA--ELIGGK----V----EALQVD--------AADVD 60 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeC---CHHHHHHHH--hhcccc----c----eeEEec--------ccChH
Confidence 6999999999999999998887 678654433 455555554 221111 1 111111 11111
Q ss_pred CCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEe
Q psy8544 82 EIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIIT 120 (364)
Q Consensus 82 ~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIs 120 (364)
.+.=--.+.|+||.|.+.|....-+++.+++|..-+-+|
T Consensus 61 al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts 99 (389)
T COG1748 61 ALVALIKDFDLVINAAPPFVDLTILKACIKTGVDYVDTS 99 (389)
T ss_pred HHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCCEEEcc
Confidence 110000245999999999999999999999999544443
No 121
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=90.84 E-value=1.6 Score=37.89 Aligned_cols=78 Identities=21% Similarity=0.203 Sum_probs=45.5
Q ss_pred ceEEEEcc-ChHHHHHHHHHhcCC--CcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCC
Q psy8544 3 YKIGINGF-GRIGRLVLREALHRN--TPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMK 79 (364)
Q Consensus 3 irVaInG~-G~IGr~vlr~l~~~~--~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~ 79 (364)
+||+|.|. |.||..++-.|..++ =||+-+.. +.+ .+.-...|=.|..+. .+..+.+.. .+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~---~~~-~~~g~a~Dl~~~~~~------------~~~~~~i~~-~~ 63 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDI---NED-KAEGEALDLSHASAP------------LPSPVRITS-GD 63 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEES---SHH-HHHHHHHHHHHHHHG------------STEEEEEEE-SS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEecc---Ccc-cceeeehhhhhhhhh------------ccccccccc-cc
Confidence 59999997 999999998887662 35654433 222 222222233222211 112233433 45
Q ss_pred CCCCCCcCCCccEEEeecCCCC
Q psy8544 80 PEEIPWSQTGAEYIVESTGVFK 101 (364)
Q Consensus 80 p~~~~w~~~gvDiV~estG~f~ 101 (364)
.+.+. ++|+|+-+.|...
T Consensus 64 ~~~~~----~aDivvitag~~~ 81 (141)
T PF00056_consen 64 YEALK----DADIVVITAGVPR 81 (141)
T ss_dssp GGGGT----TESEEEETTSTSS
T ss_pred ccccc----cccEEEEeccccc
Confidence 55554 8999999998753
No 122
>PLN02928 oxidoreductase family protein
Probab=90.76 E-value=0.28 Score=49.10 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=27.5
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.+|||+|+|+||+.+++.|...+++|++.+.
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr 190 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRR 190 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECC
Confidence 4899999999999999999877999988764
No 123
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=90.73 E-value=0.29 Score=48.66 Aligned_cols=31 Identities=35% Similarity=0.581 Sum_probs=26.7
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.+|||+|||+||+.+.+.|...+|+|.+.+-
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~ 173 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDP 173 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECC
Confidence 4799999999999999998877999876643
No 124
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=90.71 E-value=0.17 Score=43.59 Aligned_cols=32 Identities=38% Similarity=0.585 Sum_probs=28.2
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDP 34 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~ 34 (364)
+||+|+|.|++|+.+.++|.+.+++|++|-..
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 79999999999999999998889999988653
No 125
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=90.61 E-value=0.7 Score=47.48 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=24.2
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEE
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGI 31 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaI 31 (364)
+|+|.|+|.||+.+++.+...+..|+.+
T Consensus 204 tVvViG~G~IG~~va~~ak~~Ga~ViV~ 231 (413)
T cd00401 204 VAVVAGYGDVGKGCAQSLRGQGARVIVT 231 (413)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 7999999999999999988777776554
No 126
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.56 E-value=0.41 Score=46.20 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=29.7
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHH
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAY 43 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ 43 (364)
.||+|+|.|.+|..+...+..++++|+..+ . +++.+..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d-~--~~~~~~~ 42 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLND-V--SADRLEA 42 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEe-C--CHHHHHH
Confidence 479999999999999999988888876654 3 4555443
No 127
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.52 E-value=1.9 Score=41.39 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=29.9
Q ss_pred CC-ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHH
Q psy8544 1 MA-YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYL 41 (364)
Q Consensus 1 m~-irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~ 41 (364)
|. .||+|+|.|.+|..++..+..++.+|+.++ . +++.+
T Consensus 1 ~~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d-~--~~~~~ 39 (282)
T PRK05808 1 MGIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVD-I--SDAAV 39 (282)
T ss_pred CCccEEEEEccCHHHHHHHHHHHHCCCceEEEe-C--CHHHH
Confidence 44 379999999999999999988888887764 3 45544
No 128
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=90.40 E-value=1.2 Score=37.36 Aligned_cols=83 Identities=23% Similarity=0.234 Sum_probs=55.5
Q ss_pred eEEEEc----cChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCC
Q psy8544 4 KIGING----FGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMK 79 (364)
Q Consensus 4 rVaInG----~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~ 79 (364)
+|||+| -+..|+.+++.|.+++++|..||-- ++. +.|.+ .+ .+
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~------------~~~-----------------i~G~~--~y--~s 48 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPK------------GGE-----------------ILGIK--CY--PS 48 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTT------------CSE-----------------ETTEE---B--SS
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCC------------ceE-----------------ECcEE--ee--cc
Confidence 699999 4999999999999888999999853 122 23322 22 22
Q ss_pred CCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCC
Q psy8544 80 PEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAP 122 (364)
Q Consensus 80 p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsap 122 (364)
.++.+ ..+|+++-++......+..+...+.|++.+++...
T Consensus 49 l~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 49 LAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp GGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred ccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 22222 37899999998888888888888889999888654
No 129
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=90.36 E-value=0.68 Score=43.15 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=25.0
Q ss_pred CceEEEEccChHHHHHHHHHhcC---CCc-EEEEeC
Q psy8544 2 AYKIGINGFGRIGRLVLREALHR---NTP-VVGIND 33 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~---~~~-ivaInd 33 (364)
.+||+|.|.|++|+.+++.+..+ +++ ++..++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~ 39 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNR 39 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECC
Confidence 47999999999999999988765 344 555555
No 130
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=90.25 E-value=0.31 Score=48.43 Aligned_cols=31 Identities=32% Similarity=0.435 Sum_probs=26.0
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.++||.|+||||+.++|.+..-+++|..-+.
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~ 177 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDR 177 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECC
Confidence 4799999999999999999855888865543
No 131
>PRK06436 glycerate dehydrogenase; Provisional
Probab=90.17 E-value=0.34 Score=47.64 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=26.5
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.+|||+|+|+||+.+++.|...+++|++.+.
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r 153 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTR 153 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECC
Confidence 4799999999999999988666899887764
No 132
>PRK07574 formate dehydrogenase; Provisional
Probab=90.11 E-value=0.34 Score=49.25 Aligned_cols=31 Identities=32% Similarity=0.408 Sum_probs=27.0
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.+|||+|+|+||+.+++.|...+++|.+.+.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr 223 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDR 223 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECC
Confidence 4799999999999999999877899877754
No 133
>PRK06223 malate dehydrogenase; Reviewed
Probab=89.98 E-value=1.4 Score=42.71 Aligned_cols=29 Identities=28% Similarity=0.287 Sum_probs=24.0
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC-cEEEE
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT-PVVGI 31 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~-~ivaI 31 (364)
+||+|.|.|.+|..++..+..+++ +|+-+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~ 32 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLF 32 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence 699999999999999998876643 76655
No 134
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=89.87 E-value=0.91 Score=46.82 Aligned_cols=29 Identities=14% Similarity=0.280 Sum_probs=24.8
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEe
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
+|+|.|+|.||+.+++.|...+..|+.++
T Consensus 214 ~VlViG~G~IG~~vA~~lr~~Ga~ViV~d 242 (425)
T PRK05476 214 VVVVAGYGDVGKGCAQRLRGLGARVIVTE 242 (425)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 79999999999999999987777765553
No 135
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=89.83 E-value=1.9 Score=42.20 Aligned_cols=89 Identities=16% Similarity=0.158 Sum_probs=50.4
Q ss_pred eEEEEccChHHHHHHHHHhcCCCc-EEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTP-VVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~-ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
+|.|+|.|.||...++++...+.. |+++.. +.+.+..+.++ |- ...++-+.-.+ .+ ...
T Consensus 172 ~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~---~~~~~~~a~~l----Ga----------~~vi~~~~~~~-~~--~~~ 231 (343)
T PRK09880 172 RVFVSGVGPIGCLIVAAVKTLGAAEIVCADV---SPRSLSLAREM----GA----------DKLVNPQNDDL-DH--YKA 231 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEEeC---CHHHHHHHHHc----CC----------cEEecCCcccH-HH--Hhc
Confidence 689999999999999988877774 555432 34544444322 11 01111110001 00 000
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCCC
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGAK 115 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGak 115 (364)
.. .++|+||||+|.-.+.+.+-..++.|.+
T Consensus 232 -~~--g~~D~vid~~G~~~~~~~~~~~l~~~G~ 261 (343)
T PRK09880 232 -EK--GYFDVSFEVSGHPSSINTCLEVTRAKGV 261 (343)
T ss_pred -cC--CCCCEEEECCCCHHHHHHHHHHhhcCCE
Confidence 01 1589999999975455556667777653
No 136
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=89.67 E-value=0.4 Score=47.55 Aligned_cols=29 Identities=34% Similarity=0.503 Sum_probs=24.5
Q ss_pred ceEEEEccChHHHHHHHHHh-cCCCcEEEE
Q psy8544 3 YKIGINGFGRIGRLVLREAL-HRNTPVVGI 31 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~-~~~~~ivaI 31 (364)
.+|||+|+|+|||.+.+.+. ..+++|++-
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~ 175 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYN 175 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999986 558887644
No 137
>PRK13243 glyoxylate reductase; Reviewed
Probab=89.66 E-value=0.39 Score=47.74 Aligned_cols=31 Identities=39% Similarity=0.520 Sum_probs=26.6
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.+|||+|+|+||+.+.+.|...+++|.+.+.
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~ 181 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSR 181 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECC
Confidence 4899999999999999999877888876643
No 138
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=89.61 E-value=0.44 Score=45.93 Aligned_cols=32 Identities=25% Similarity=0.483 Sum_probs=27.6
Q ss_pred CCceEEEEccChHHHHHHHHHhcCCCcEEEEe
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
|.+||||+|+|.+|+.+.+.|...+++|.+.+
T Consensus 1 ~~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d 32 (296)
T PRK11559 1 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVYD 32 (296)
T ss_pred CCceEEEEccCHHHHHHHHHHHHCCCeEEEEc
Confidence 77899999999999999999987788876554
No 139
>KOG1502|consensus
Probab=89.60 E-value=2.1 Score=42.70 Aligned_cols=104 Identities=16% Similarity=0.245 Sum_probs=63.5
Q ss_pred CceEEEEc-cChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEec--C
Q psy8544 2 AYKIGING-FGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQK--M 78 (364)
Q Consensus 2 ~irVaInG-~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~--~ 78 (364)
..+|-|-| .|-||.-+++.|++|+-.|.+--...-+.+...||.+.+.. + +.+.++.. .
T Consensus 6 ~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a-----------~-------~~l~l~~aDL~ 67 (327)
T KOG1502|consen 6 GKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGA-----------K-------ERLKLFKADLL 67 (327)
T ss_pred CcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccC-----------c-------ccceEEecccc
Confidence 36899999 89999999999999977776544332466666677754421 1 11222221 3
Q ss_pred CCCCCCCcCCCccEEEeecCCCCC--H----hh-----------HHHHHhCC-CCEEEEeCCC
Q psy8544 79 KPEEIPWSQTGAEYIVESTGVFKT--K----DT-----------ASAHLKGG-AKKVIITAPS 123 (364)
Q Consensus 79 ~p~~~~w~~~gvDiV~estG~f~s--~----e~-----------a~~hl~aG-akkVIIsaps 123 (364)
++..|+=.-.|+|+||-++..+-- . +. .+...+.. +||||++.+.
T Consensus 68 d~~sf~~ai~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~ 130 (327)
T KOG1502|consen 68 DEGSFDKAIDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSST 130 (327)
T ss_pred ccchHHHHHhCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccH
Confidence 445554444589999887743221 0 11 12333444 7899998664
No 140
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.57 E-value=0.39 Score=49.13 Aligned_cols=30 Identities=27% Similarity=0.296 Sum_probs=26.3
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEe
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
.+|||+|+|+||+.+++.+...+++|++.+
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d 181 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYD 181 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEC
Confidence 379999999999999999987789987664
No 141
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=89.50 E-value=0.77 Score=42.53 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=24.8
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEe
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
|||+|.| +|.+|..+.+.|.+.+.+|+..+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~ 31 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGS 31 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEE
Confidence 4899997 99999999999987766765553
No 142
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=89.47 E-value=0.43 Score=47.05 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=26.9
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.+|||+|+|.||+.+.+.|...+++|.+.+.
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~ 167 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSR 167 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 4899999999999999999877899877653
No 143
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=89.04 E-value=0.56 Score=41.39 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=28.9
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHH
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYM 44 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~l 44 (364)
+|||++|+|.+|+.+++.|.+.+++|..-| . +++....+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d-~--~~~~~~~~ 40 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYD-R--SPEKAEAL 40 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEE-S--SHHHHHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeec-c--chhhhhhh
Confidence 699999999999999999998889986655 3 45544333
No 144
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=88.86 E-value=0.52 Score=46.84 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=27.0
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.+|||+|+|+||+.+++.|...+++|++.+.
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~ 177 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDA 177 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeC
Confidence 4899999999999999999877889877653
No 145
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=88.71 E-value=0.62 Score=40.01 Aligned_cols=94 Identities=17% Similarity=0.189 Sum_probs=52.7
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCc-EEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTP-VVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPE 81 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~-ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~ 81 (364)
-||.|.|.|-+||.++..|.++++. |.-+|.. .+....|.+. | .+..+.+....+..
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt---~~ra~~l~~~------~-------------~~~~~~~~~~~~~~ 70 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRT---PERAEALAEE------F-------------GGVNIEAIPLEDLE 70 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS---HHHHHHHHHH------H-------------TGCSEEEEEGGGHC
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC---HHHHHHHHHH------c-------------CccccceeeHHHHH
Confidence 4899999999999999999988766 6666763 4444333320 0 11112222112111
Q ss_pred CCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCC--EEEEeCC
Q psy8544 82 EIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAK--KVIITAP 122 (364)
Q Consensus 82 ~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGak--kVIIsap 122 (364)
. ....+|+||.||+.-... --+.+++.+-+ +++++-.
T Consensus 71 ~---~~~~~DivI~aT~~~~~~-i~~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 71 E---ALQEADIVINATPSGMPI-ITEEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp H---HHHTESEEEE-SSTTSTS-STHHHHTTTCHHCSEEEES-
T ss_pred H---HHhhCCeEEEecCCCCcc-cCHHHHHHHHhhhhceeccc
Confidence 1 112689999999765431 12334544432 4788753
No 146
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=88.71 E-value=0.56 Score=40.25 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=28.5
Q ss_pred eEEEEccChHHHHHHHHHhcCCCc-EEEEeCCCCCHHHHHHHhhc
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTP-VVGINDPHLSVDYLAYMLKY 47 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~-ivaInd~~~~~~~~a~ll~y 47 (364)
||.|.|.|.+|..+++.|...++. ++-+.+-..+++.+.+-+-|
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~ 45 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLA 45 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccC
Confidence 689999999999999999876653 43333222344444443333
No 147
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=88.70 E-value=1.4 Score=45.25 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=25.3
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC-cEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT-PVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~-~ivaInd 33 (364)
.+|+|.|.|.+|+.+++.|...++ +|+.+|.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r 214 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANR 214 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeC
Confidence 489999999999999999987776 5555554
No 148
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.65 E-value=0.56 Score=44.42 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.5
Q ss_pred CCceEEEEccChHHHHHHHHHhcCC
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHRN 25 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~~ 25 (364)
|++||+|+|+|.+|..+++.|.+.+
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~g 25 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASG 25 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhCC
Confidence 7789999999999999999987664
No 149
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=88.43 E-value=0.61 Score=49.06 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=30.2
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHH
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAY 43 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ 43 (364)
.||||+|.|.+|+-+...+...+++|+..+- +++.+..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~---~~e~l~~ 43 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDI---RAEALAR 43 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeC---CHHHHHH
Confidence 3799999999999999999888889876643 5655543
No 150
>PLN02306 hydroxypyruvate reductase
Probab=88.36 E-value=0.56 Score=47.75 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=25.3
Q ss_pred ceEEEEccChHHHHHHHHHh-cCCCcEEEEe
Q psy8544 3 YKIGINGFGRIGRLVLREAL-HRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~-~~~~~ivaIn 32 (364)
-+|||+|||+||+.+++.+. ..+++|.+.+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d 196 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEEC
Confidence 47999999999999999975 4488987664
No 151
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=88.35 E-value=0.54 Score=47.73 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=26.0
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEe
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
.+|||+|+|.||+.+.+.|...+++|.+.+
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~d 146 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCD 146 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEC
Confidence 489999999999999999987789986653
No 152
>PRK08818 prephenate dehydrogenase; Provisional
Probab=88.13 E-value=1.2 Score=45.20 Aligned_cols=78 Identities=23% Similarity=0.356 Sum_probs=50.8
Q ss_pred CceEEEEcc-ChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCC
Q psy8544 2 AYKIGINGF-GRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMK 79 (364)
Q Consensus 2 ~irVaInG~-G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~ 79 (364)
+.||+|+|. |.||+.+.++|.++ +.+|.++. .. |. . ..+
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D-~~------------d~-------------~-------------~~~ 44 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHD-PA------------DP-------------G-------------SLD 44 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEc-CC------------cc-------------c-------------cCC
Confidence 469999998 99999999999875 66765442 10 10 0 001
Q ss_pred CCCCCCcCCCccEEEeecCCCCCHhhHHHHH------hCCCCEEEEeCCC
Q psy8544 80 PEEIPWSQTGAEYIVESTGVFKTKDTASAHL------KGGAKKVIITAPS 123 (364)
Q Consensus 80 p~~~~w~~~gvDiV~estG~f~s~e~a~~hl------~aGakkVIIsaps 123 (364)
+... -.++|+||-|++.....+..+... +.|+ +|.+..|
T Consensus 45 ~~~~---v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~~~--iVtDVgS 89 (370)
T PRK08818 45 PATL---LQRADVLIFSAPIRHTAALIEEYVALAGGRAAGQ--LWLDVTS 89 (370)
T ss_pred HHHH---hcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCCCe--EEEECCC
Confidence 1111 126899999999887776665433 4455 7777766
No 153
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=87.97 E-value=0.8 Score=48.20 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=29.7
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHH
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAY 43 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ 43 (364)
||||+|.|.+|+-+++.+...+++|+..+ . +++.+..
T Consensus 9 ~V~VIGaG~MG~gIA~~la~aG~~V~l~D-~--~~e~l~~ 45 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQAGHTVLLYD-A--RAGAAAA 45 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEe-C--CHHHHHH
Confidence 69999999999999999888789987554 3 5665544
No 154
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=87.92 E-value=3.6 Score=39.32 Aligned_cols=31 Identities=29% Similarity=0.288 Sum_probs=25.7
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
|||+|.|.|.+|..+...|.+.+.+|..+..
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEC
Confidence 4899999999999999998877667766653
No 155
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=87.83 E-value=1.7 Score=44.58 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=25.6
Q ss_pred ceEEEEccChHHHHHHHHHhcCC-CcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRN-TPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~-~~ivaInd 33 (364)
-+|+|.|+|.+|+.+++.|...+ .+|+.+|.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 47999999999999999998776 45666654
No 156
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=87.77 E-value=1.1 Score=38.88 Aligned_cols=112 Identities=20% Similarity=0.264 Sum_probs=57.3
Q ss_pred EEEEc-cChHHHHHHHHHhcC--CCcEEEEeCCCCCHHHHHHHhh-cccccccCCcceeec--CCeEEECCEEEEEEecC
Q psy8544 5 IGING-FGRIGRLVLREALHR--NTPVVGINDPHLSVDYLAYMLK-YDSTHGRFKGDVKTE--GNNIVVNGKKIAVFQKM 78 (364)
Q Consensus 5 VaInG-~G~IGr~vlr~l~~~--~~~ivaInd~~~~~~~~a~ll~-ydS~~g~~~~~v~~~--~~~l~i~gk~I~v~~~~ 78 (364)
|+|.| ||-||++.++.+.++ .|+|+++.. ..+.+.+....+ |...|--.......+ ...+.-.+..++++.-.
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa-~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~ 79 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSA-GSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGP 79 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEE-SSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESH
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEc-CCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeCh
Confidence 68999 999999999999887 699999976 346776665543 211110000000000 00000011112222111
Q ss_pred C-CCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEE
Q psy8544 79 K-PEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119 (364)
Q Consensus 79 ~-p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVII 119 (364)
+ ..++- ....+|+|+.+.-.+...+-.-.++++|. ++-+
T Consensus 80 ~~l~~~~-~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk-~iaL 119 (129)
T PF02670_consen 80 EGLEELA-EEPEVDIVVNAIVGFAGLKPTLAAIKAGK-DIAL 119 (129)
T ss_dssp HHHHHHH-THTT-SEEEE--SSGGGHHHHHHHHHTTS-EEEE
T ss_pred HHHHHHh-cCCCCCEEEEeCcccchHHHHHHHHHCCC-eEEE
Confidence 0 11110 11368899988877777776667888874 4444
No 157
>PLN03139 formate dehydrogenase; Provisional
Probab=87.75 E-value=0.58 Score=47.63 Aligned_cols=30 Identities=33% Similarity=0.467 Sum_probs=25.9
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEe
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
.+|||+|+|+||+.+++.|...+++|.+.+
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d 229 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHD 229 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEC
Confidence 479999999999999999987788886654
No 158
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=87.55 E-value=1.1 Score=44.23 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=23.6
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC--cEEEE
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT--PVVGI 31 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~--~ivaI 31 (364)
.||+|.|.|.||..++-.|..+++ +|+-+
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~ 37 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVII 37 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 699999999999999998877744 55544
No 159
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=87.46 E-value=2.9 Score=35.75 Aligned_cols=31 Identities=23% Similarity=0.147 Sum_probs=23.9
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.+|+|.|.|.+|+.+++.|.+.+...|.+-+
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~ 50 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVN 50 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEc
Confidence 5899999999999999999876533334434
No 160
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=87.25 E-value=1.5 Score=44.27 Aligned_cols=31 Identities=32% Similarity=0.537 Sum_probs=27.6
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
+||.|.| +|.||+.+++.|.+++.+|+++..
T Consensus 61 ~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R 92 (390)
T PLN02657 61 VTVLVVGATGYIGKFVVRELVRRGYNVVAVAR 92 (390)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEEe
Confidence 5899999 899999999999988888887764
No 161
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=87.23 E-value=2.7 Score=39.68 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=27.6
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeCC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGINDP 34 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd~ 34 (364)
+|-|.| +|-||+.+++.|.+++.+|+++...
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~ 33 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRL 33 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCCeEEEEeCC
Confidence 589999 8999999999999988899888753
No 162
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=87.23 E-value=2.9 Score=37.59 Aligned_cols=87 Identities=20% Similarity=0.305 Sum_probs=45.4
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEEI 83 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~~ 83 (364)
++.|.|||.+||-+++.|...+..| .|-+. ||-...... . +|-.+.-.. +.+
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~Ga~V-~V~e~--DPi~alqA~-~--------------------dGf~v~~~~----~a~ 76 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGLGARV-TVTEI--DPIRALQAA-M--------------------DGFEVMTLE----EAL 76 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EE-EEE-S--SHHHHHHHH-H--------------------TT-EEE-HH----HHT
T ss_pred EEEEeCCCcccHHHHHHHhhCCCEE-EEEEC--ChHHHHHhh-h--------------------cCcEecCHH----HHH
Confidence 6899999999999999998875443 44554 664221111 0 111111111 112
Q ss_pred CCcCCCccEEEeecCCC--CCHhhHHHHHhCCCCEEEEeCCCCC
Q psy8544 84 PWSQTGAEYIVESTGVF--KTKDTASAHLKGGAKKVIITAPSKD 125 (364)
Q Consensus 84 ~w~~~gvDiV~estG~f--~s~e~a~~hl~aGakkVIIsaps~d 125 (364)
. ..|++|-+||.- ++.|..+ .++-|| ++.+..+.|
T Consensus 77 ~----~adi~vtaTG~~~vi~~e~~~-~mkdga--il~n~Gh~d 113 (162)
T PF00670_consen 77 R----DADIFVTATGNKDVITGEHFR-QMKDGA--ILANAGHFD 113 (162)
T ss_dssp T----T-SEEEE-SSSSSSB-HHHHH-HS-TTE--EEEESSSST
T ss_pred h----hCCEEEECCCCccccCHHHHH-HhcCCe--EEeccCcCc
Confidence 2 479999999864 3444443 466777 777666654
No 163
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=86.81 E-value=5.4 Score=41.10 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=28.7
Q ss_pred CceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 2 AYKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 2 ~irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.+||.|-| +|-||+.+++.|.+++.+|+++..
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 37999999 999999999999998889998864
No 164
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.51 E-value=3.6 Score=42.88 Aligned_cols=87 Identities=22% Similarity=0.159 Sum_probs=53.5
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
-||.|.|+|++|+..++.|..++.++++ .|. .++....+.++ +-.+ +.+ ...++.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~-~D~--~~~~~~~l~~~--------------g~~~-~~~-------~~~~~~ 67 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTV-CDD--DPDALRPHAER--------------GVAT-VST-------SDAVQQ 67 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEE-EcC--CHHHHHHHHhC--------------CCEE-EcC-------cchHhH
Confidence 3899999999999999988887777654 664 23333222110 1011 111 112222
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEe
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIIT 120 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIs 120 (364)
+. +.|+||.|.|.-.+.+....+.+.|. -|++
T Consensus 68 l~----~~D~VV~SpGi~~~~p~~~~a~~~gi--~v~~ 99 (488)
T PRK03369 68 IA----DYALVVTSPGFRPTAPVLAAAAAAGV--PIWG 99 (488)
T ss_pred hh----cCCEEEECCCCCCCCHHHHHHHHCCC--cEee
Confidence 32 57999999998877666666667776 4453
No 165
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.51 E-value=3.4 Score=42.66 Aligned_cols=92 Identities=14% Similarity=0.198 Sum_probs=53.0
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
-+|.|.|.|.+|..+++.|.+++.+|+.+... +.+....+.++ .+..|=.+..+ ..+.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~--~~~~~~~~~~~----------l~~~gv~~~~~---------~~~~- 74 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDG--DDERHRALAAI----------LEALGATVRLG---------PGPT- 74 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC--chhhhHHHHHH----------HHHcCCEEEEC---------CCcc-
Confidence 37999999999999999998888887666432 22111111110 00001111111 1111
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeC
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITA 121 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsa 121 (364)
. ..++|+|+.++|.--..+......+.|. .|++-
T Consensus 75 ~---~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi--~v~~~ 108 (480)
T PRK01438 75 L---PEDTDLVVTSPGWRPDAPLLAAAADAGI--PVWGE 108 (480)
T ss_pred c---cCCCCEEEECCCcCCCCHHHHHHHHCCC--eecch
Confidence 1 1258999999998666665555666676 45543
No 166
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=86.50 E-value=5 Score=38.36 Aligned_cols=82 Identities=20% Similarity=0.207 Sum_probs=52.0
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEEI 83 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~~ 83 (364)
+|.|+|.|.+|+.+++++..++.+++++.. +.+...++.++... . .++- .+. .
T Consensus 158 ~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~-------~-------~~~~--------~~~--~ 210 (319)
T cd08242 158 KVAVLGDGKLGLLIAQVLALTGPDVVLVGR---HSEKLALARRLGVE-------T-------VLPD--------EAE--S 210 (319)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEcC---CHHHHHHHHHcCCc-------E-------EeCc--------ccc--c
Confidence 688999999999999998888888776643 35555444433211 0 0110 000 1
Q ss_pred CCcCCCccEEEeecCCCCCHhhHHHHHhCCC
Q psy8544 84 PWSQTGAEYIVESTGVFKTKDTASAHLKGGA 114 (364)
Q Consensus 84 ~w~~~gvDiV~estG~f~s~e~a~~hl~aGa 114 (364)
++ .++|++++|+|.-...+.+..+++.+.
T Consensus 211 ~~--~~~d~vid~~g~~~~~~~~~~~l~~~g 239 (319)
T cd08242 211 EG--GGFDVVVEATGSPSGLELALRLVRPRG 239 (319)
T ss_pred cC--CCCCEEEECCCChHHHHHHHHHhhcCC
Confidence 22 379999999986445556666776665
No 167
>PTZ00117 malate dehydrogenase; Provisional
Probab=86.27 E-value=2.5 Score=41.68 Aligned_cols=27 Identities=41% Similarity=0.492 Sum_probs=22.0
Q ss_pred ceEEEEccChHHHHHHHHHhcCC-CcEE
Q psy8544 3 YKIGINGFGRIGRLVLREALHRN-TPVV 29 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~-~~iv 29 (364)
.||+|.|.|.||..+...+..++ .+|+
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~ 33 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVV 33 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEE
Confidence 69999999999999988877665 3543
No 168
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.09 E-value=1.2 Score=42.08 Aligned_cols=25 Identities=12% Similarity=0.312 Sum_probs=21.3
Q ss_pred CceEEEEccChHHHHHHHHHhcCCC
Q psy8544 2 AYKIGINGFGRIGRLVLREALHRNT 26 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~~~ 26 (364)
..||.|.|.|-+|..+++.|...++
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GV 35 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGV 35 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCC
Confidence 3589999999999999999986544
No 169
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=86.06 E-value=3 Score=41.85 Aligned_cols=92 Identities=18% Similarity=0.221 Sum_probs=55.0
Q ss_pred CceEEEEccChHHHHHHHHHhcC--CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCC
Q psy8544 2 AYKIGINGFGRIGRLVLREALHR--NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMK 79 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~--~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~ 79 (364)
++||||.|. .+|+..++++.+. ++++|||-|. +++....+-+ .||. ..+ .+
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~--~~erA~~~A~---~~gi-------------------~~y--~~ 55 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQ--GSERSRALAH---RLGV-------------------PLY--CE 55 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcC--CHHHHHHHHH---HhCC-------------------Ccc--CC
Confidence 579999999 6799999988764 6999999996 5554322221 1110 011 12
Q ss_pred CCCCCCcCCCccEEEee--cCCCCCHhhHHHHHhCCCCEEEEeCC
Q psy8544 80 PEEIPWSQTGAEYIVES--TGVFKTKDTASAHLKGGAKKVIITAP 122 (364)
Q Consensus 80 p~~~~w~~~gvDiV~es--tG~f~s~e~a~~hl~aGakkVIIsap 122 (364)
.+++. .+.++|+|.=+ +....-.+.+...+++|. .|++=-|
T Consensus 56 ~eell-~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGk-HVL~EKP 98 (343)
T TIGR01761 56 VEELP-DDIDIACVVVRSAIVGGQGSALARALLARGI-HVLQEHP 98 (343)
T ss_pred HHHHh-cCCCEEEEEeCCCCCCccHHHHHHHHHhCCC-eEEEcCC
Confidence 22222 11234444332 234566788899999985 6666545
No 170
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=85.96 E-value=5.6 Score=40.82 Aligned_cols=33 Identities=21% Similarity=0.532 Sum_probs=29.6
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPH 35 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~ 35 (364)
.||+|-|||.+|+.+++.|.+.+-+||++.|..
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~ 240 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSK 240 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 589999999999999999977788999998863
No 171
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=85.57 E-value=2.9 Score=40.54 Aligned_cols=95 Identities=22% Similarity=0.304 Sum_probs=52.6
Q ss_pred eEEEEccChHHHHHHHHHhcCCCc-EEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTP-VVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~-ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
+|.|+|.|.||..+++++...+.. |+++.. +.+.+..+.++ |- ...++.+.-.. ....+
T Consensus 166 ~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~---~~~~~~~~~~~----ga----------~~~i~~~~~~~---~~~~~ 225 (339)
T cd08239 166 TVLVVGAGPVGLGALMLARALGAEDVIGVDP---SPERLELAKAL----GA----------DFVINSGQDDV---QEIRE 225 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEECC---CHHHHHHHHHh----CC----------CEEEcCCcchH---HHHHH
Confidence 789999999999999988777777 776643 34443333222 10 01111110000 00000
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEE
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVII 119 (364)
+. ...++|+||||+|.....+.+-..++.+.+-+++
T Consensus 226 ~~-~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 226 LT-SGAGADVAIECSGNTAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred Hh-CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 00 1127999999999765545555667666643334
No 172
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=85.48 E-value=1.4 Score=43.66 Aligned_cols=31 Identities=29% Similarity=0.315 Sum_probs=24.2
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC-cEEEEeCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT-PVVGINDP 34 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~-~ivaInd~ 34 (364)
.||+|.|.|.+|..+...+..+++ + +.+-|.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi 38 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDI 38 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeC
Confidence 489999999999999888776664 6 444454
No 173
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=85.46 E-value=0.98 Score=45.93 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=25.5
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEE
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGI 31 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaI 31 (364)
.+|||+|+|.||+.+.+.|...+++|++.
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~ 145 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVC 145 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 47999999999999999998778888655
No 174
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=85.31 E-value=1.1 Score=44.84 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=27.9
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDP 34 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~ 34 (364)
-+|||+|+|+||+.+++.|...+++|+.-++.
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~ 48 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRP 48 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECc
Confidence 47999999999999999998889998776654
No 175
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=85.16 E-value=3.5 Score=44.46 Aligned_cols=43 Identities=21% Similarity=0.145 Sum_probs=31.4
Q ss_pred CceEEEEc-cChHHHHHHHHHhcCCCcE-EEEeCCCCCHHHHHHHh
Q psy8544 2 AYKIGING-FGRIGRLVLREALHRNTPV-VGINDPHLSVDYLAYML 45 (364)
Q Consensus 2 ~irVaInG-~G~IGr~vlr~l~~~~~~i-vaInd~~~~~~~~a~ll 45 (364)
.|||-|.| .|.||+.+.+.|.+++.++ ++..++ .|++.+...+
T Consensus 380 ~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~~~~l-~d~~~v~~~i 424 (668)
T PLN02260 380 SLKFLIYGRTGWIGGLLGKLCEKQGIAYEYGKGRL-EDRSSLLADI 424 (668)
T ss_pred CceEEEECCCchHHHHHHHHHHhCCCeEEeecccc-ccHHHHHHHH
Confidence 47999999 8999999999998877777 444554 3555443333
No 176
>PRK08605 D-lactate dehydrogenase; Validated
Probab=85.10 E-value=1.1 Score=44.48 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=24.6
Q ss_pred ceEEEEccChHHHHHHHHHh-cCCCcEEEEe
Q psy8544 3 YKIGINGFGRIGRLVLREAL-HRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~-~~~~~ivaIn 32 (364)
.+|||+|+|+||+.+.+.|. ..+++|.+.+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d 177 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYD 177 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEEC
Confidence 58999999999999999984 3478886654
No 177
>PLN02214 cinnamoyl-CoA reductase
Probab=85.05 E-value=4 Score=40.15 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=27.1
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.+|.|-| +|.||+.+++.|.+++.+|+++..
T Consensus 11 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r 42 (342)
T PLN02214 11 KTVCVTGAGGYIASWIVKILLERGYTVKGTVR 42 (342)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence 5799999 899999999999988888887754
No 178
>PLN02256 arogenate dehydrogenase
Probab=84.71 E-value=1.3 Score=43.44 Aligned_cols=33 Identities=27% Similarity=0.585 Sum_probs=28.2
Q ss_pred CceEEEEccChHHHHHHHHHhcCCCcEEEEeCC
Q psy8544 2 AYKIGINGFGRIGRLVLREALHRNTPVVGINDP 34 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~~~~ivaInd~ 34 (364)
.+||+|+|+|.+|+.+++.|.+.+.+|++++..
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~ 68 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRS 68 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECc
Confidence 469999999999999999998777788877653
No 179
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=84.69 E-value=4.8 Score=41.85 Aligned_cols=87 Identities=22% Similarity=0.217 Sum_probs=55.8
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHH-HHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVD-YLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPE 81 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~-~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~ 81 (364)
.||+|.|+|+-|+.++|.|.+++.++.+ +|....+. .....+. ..+ |.+...+.+.
T Consensus 8 ~kv~V~GLG~sG~a~a~~L~~~G~~v~v-~D~~~~~~~~~~~~~~--------------------~~~--i~~~~g~~~~ 64 (448)
T COG0771 8 KKVLVLGLGKSGLAAARFLLKLGAEVTV-SDDRPAPEGLAAQPLL--------------------LEG--IEVELGSHDD 64 (448)
T ss_pred CEEEEEecccccHHHHHHHHHCCCeEEE-EcCCCCccchhhhhhh--------------------ccC--ceeecCccch
Confidence 5899999999999999999988777544 45321111 0000000 011 1221112222
Q ss_pred CCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCC
Q psy8544 82 EIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAK 115 (364)
Q Consensus 82 ~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGak 115 (364)
.+|. ..|+|+-+=|...+-....++.++|++
T Consensus 65 -~~~~--~~d~vV~SPGi~~~~p~v~~A~~~gi~ 95 (448)
T COG0771 65 -EDLA--EFDLVVKSPGIPPTHPLVEAAKAAGIE 95 (448)
T ss_pred -hccc--cCCEEEECCCCCCCCHHHHHHHHcCCc
Confidence 4454 689999999999998888888889983
No 180
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=84.65 E-value=1.1 Score=47.43 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=26.9
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.+|||+|+|+||+.+++.|...+++|.+.+.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~ 169 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDP 169 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECC
Confidence 3799999999999999999877889887753
No 181
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=84.60 E-value=3 Score=41.35 Aligned_cols=96 Identities=23% Similarity=0.319 Sum_probs=53.2
Q ss_pred eEEEEccChHHHHHHHHHhcCCC-cEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNT-PVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~-~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
+|.|+|.|.||...++++..++. .|+++.. +++.+..+.++ |- ...++.+.-... .....
T Consensus 194 ~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~---~~~r~~~a~~~----Ga----------~~~i~~~~~~~~--~~i~~ 254 (371)
T cd08281 194 SVAVVGLGGVGLSALLGAVAAGASQVVAVDL---NEDKLALAREL----GA----------TATVNAGDPNAV--EQVRE 254 (371)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCcEEEEcC---CHHHHHHHHHc----CC----------ceEeCCCchhHH--HHHHH
Confidence 68999999999999988877777 4666632 45554444322 11 011111000000 00001
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEe
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIIT 120 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIs 120 (364)
+. ..++|+||||+|.-.+.+.+-..++.|.+-|.+.
T Consensus 255 ~~--~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 255 LT--GGGVDYAFEMAGSVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred Hh--CCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEc
Confidence 11 1279999999986555555666676666444443
No 182
>PLN02712 arogenate dehydrogenase
Probab=84.60 E-value=1.2 Score=48.57 Aligned_cols=33 Identities=24% Similarity=0.539 Sum_probs=28.5
Q ss_pred CceEEEEccChHHHHHHHHHhcCCCcEEEEeCC
Q psy8544 2 AYKIGINGFGRIGRLVLREALHRNTPVVGINDP 34 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~~~~ivaInd~ 34 (364)
.+||||+|+|+||+.+++.|.+.+.+|++.+..
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~ 401 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRS 401 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCcCEEEEEECC
Confidence 479999999999999999998777888877653
No 183
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=84.56 E-value=1.8 Score=43.99 Aligned_cols=106 Identities=16% Similarity=0.233 Sum_probs=59.4
Q ss_pred EEc-cChHHHHHHHHHhcC--CCcEEEEeCCCCCHHHHHHHhh-cccccccCCcceeecCC----eEE--ECCEEEEEEe
Q psy8544 7 ING-FGRIGRLVLREALHR--NTPVVGINDPHLSVDYLAYMLK-YDSTHGRFKGDVKTEGN----NIV--VNGKKIAVFQ 76 (364)
Q Consensus 7 InG-~G~IGr~vlr~l~~~--~~~ivaInd~~~~~~~~a~ll~-ydS~~g~~~~~v~~~~~----~l~--i~gk~I~v~~ 76 (364)
|.| ||-||++.++++..+ +|+|+++..- .+.+.++...+ |...| +-..+. .+. ..+..++++.
T Consensus 1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa~-~n~~~L~~q~~~f~p~~------v~i~~~~~~~~l~~~l~~~~~~v~~ 73 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTAN-YNIELLEQQIKRFQPRI------VSVADKELADTLRTRLSANTSKITY 73 (383)
T ss_pred CCccccHHHHHHHHHHHhCccccEEEEEECC-CCHHHHHHHHHHhCCCE------EEEcCHHHHHHHHHhccCCCcEEEE
Confidence 579 999999999998765 7999999763 46666655543 21111 111110 000 0121123332
Q ss_pred cCC-CCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeC
Q psy8544 77 KMK-PEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITA 121 (364)
Q Consensus 77 ~~~-p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsa 121 (364)
..+ ..++- ....+|+|+.+.-.+...+-.-.++++| |++-+.|
T Consensus 74 G~~~l~~l~-~~~~~D~vv~AivG~aGL~pt~~Ai~~g-k~iaLAN 117 (383)
T PRK12464 74 GTDGLIAVA-THPGSDLVLSSVVGAAGLLPTIEALKAK-KDIALAN 117 (383)
T ss_pred CHHHHHHHH-cCCCCCEEEEhhhcHhhHHHHHHHHHCC-CcEEEec
Confidence 111 11110 1126899999987677776666788888 4555543
No 184
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=84.37 E-value=2.2 Score=41.89 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=24.2
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCC--CcEEEEe
Q psy8544 3 YKIGING-FGRIGRLVLREALHRN--TPVVGIN 32 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~--~~ivaIn 32 (364)
+||+|.| +|.+|..++..|..++ .+|+.+.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd 33 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLIS 33 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEE
Confidence 4999999 5999999999988773 3576664
No 185
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=84.29 E-value=17 Score=34.74 Aligned_cols=84 Identities=17% Similarity=0.170 Sum_probs=52.6
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEEI 83 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~~ 83 (364)
+|.|.|.|.+|+.+++++...+++++++.+. .+....+-++ |- ...++. +.+
T Consensus 170 ~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~---~~~~~~~~~~----g~----------~~~~~~--------~~~--- 221 (329)
T cd08298 170 RLGLYGFGASAHLALQIARYQGAEVFAFTRS---GEHQELAREL----GA----------DWAGDS--------DDL--- 221 (329)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEcCC---hHHHHHHHHh----CC----------cEEecc--------Ccc---
Confidence 6889999999999999887778888777553 2332222211 10 011111 111
Q ss_pred CCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEE
Q psy8544 84 PWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKV 117 (364)
Q Consensus 84 ~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkV 117 (364)
...++|+++++++.....+.+..+++.+..-+
T Consensus 222 --~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v 253 (329)
T cd08298 222 --PPEPLDAAIIFAPVGALVPAALRAVKKGGRVV 253 (329)
T ss_pred --CCCcccEEEEcCCcHHHHHHHHHHhhcCCEEE
Confidence 12368999999876666777778888776444
No 186
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=84.19 E-value=1.1 Score=47.21 Aligned_cols=31 Identities=32% Similarity=0.482 Sum_probs=27.1
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.+|||+|+|+||+.+++.|...+++|++.+.
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~ 171 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDP 171 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECC
Confidence 4799999999999999999877899887754
No 187
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=83.95 E-value=4.9 Score=39.82 Aligned_cols=30 Identities=20% Similarity=0.436 Sum_probs=24.7
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
+|.|.|.|.||...++++...+..++++..
T Consensus 186 ~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~ 215 (360)
T PLN02586 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISS 215 (360)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 689999999999999988777777776643
No 188
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=83.93 E-value=12 Score=34.42 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=26.1
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
-+|-|+|.|.||...++.|.+.+-+|+.|+.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 4799999999999999999888767776753
No 189
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=83.64 E-value=1.9 Score=42.75 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.6
Q ss_pred ceEEEEccChHHHHHHHHHhcC
Q psy8544 3 YKIGINGFGRIGRLVLREALHR 24 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~ 24 (364)
+||+|.|.|.||..++-+|..+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~ 22 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ 22 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc
Confidence 4899999999999999888665
No 190
>PLN02712 arogenate dehydrogenase
Probab=83.38 E-value=1.4 Score=47.95 Aligned_cols=32 Identities=25% Similarity=0.511 Sum_probs=28.0
Q ss_pred CceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 2 AYKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
++||||+|+|+||+.+++.|.+.+++|++++.
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr 83 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSR 83 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeC
Confidence 36999999999999999999877888887765
No 191
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=83.34 E-value=6 Score=37.83 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=26.3
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEe
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
.+|.|-| +|.||+.+++.|.+++.+|+++.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~ 35 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRGYTVKATV 35 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCCCEEEEEE
Confidence 4799999 89999999999998888887664
No 192
>KOG1203|consensus
Probab=83.22 E-value=4.2 Score=41.82 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=26.3
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEe
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
..|.|.| +|++||++.+.|.+++|.+-+.-
T Consensus 80 ~~VlVvGatG~vG~~iv~~llkrgf~vra~V 110 (411)
T KOG1203|consen 80 TTVLVVGATGKVGRRIVKILLKRGFSVRALV 110 (411)
T ss_pred CeEEEecCCCchhHHHHHHHHHCCCeeeeec
Confidence 5899999 99999999999999988776553
No 193
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=82.97 E-value=0.83 Score=41.10 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.9
Q ss_pred eEEEEccChHHHHHHHHHhcCCCc
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTP 27 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ 27 (364)
||+|.|.|-+|..++..|...++.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg 24 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVG 24 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCC
Confidence 689999999999999998876554
No 194
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=82.85 E-value=13 Score=36.36 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=28.7
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHH
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYM 44 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~l 44 (364)
+|.|.|.|.||..+++++...+..++++.. +++.+..+
T Consensus 169 ~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~---~~~~~~~~ 206 (349)
T TIGR03201 169 LVIVIGAGGVGGYMVQTAKAMGAAVVAIDI---DPEKLEMM 206 (349)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEcC---CHHHHHHH
Confidence 689999999999999988877778776643 35554444
No 195
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.82 E-value=6.9 Score=38.82 Aligned_cols=31 Identities=13% Similarity=0.196 Sum_probs=24.8
Q ss_pred CceEEEEcc-ChHHHHHHHHHhcCC-------CcEEEEe
Q psy8544 2 AYKIGINGF-GRIGRLVLREALHRN-------TPVVGIN 32 (364)
Q Consensus 2 ~irVaInG~-G~IGr~vlr~l~~~~-------~~ivaIn 32 (364)
++||+|.|. |.||..++..|..++ .+|+.+.
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D 40 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLD 40 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEE
Confidence 579999995 999999999987752 3676663
No 196
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=82.80 E-value=1.4 Score=40.03 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=27.5
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHH
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAY 43 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ 43 (364)
|||+|.|.|.||-.++-++.+.+++|+++ |. +.+.+.-
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~-D~--~~~~v~~ 38 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGV-DI--DEEKVEA 38 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE--S---HHHHHH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEE-eC--ChHHHHH
Confidence 59999999999999988888889999888 43 6665533
No 197
>KOG2741|consensus
Probab=82.70 E-value=3.7 Score=41.19 Aligned_cols=96 Identities=24% Similarity=0.325 Sum_probs=59.3
Q ss_pred CceEEEEccChHHHHHHHHHhcC---CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecC
Q psy8544 2 AYKIGINGFGRIGRLVLREALHR---NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKM 78 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~---~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~ 78 (364)
.+|+||+|.|+|++-++++|... +..||||.++ +.+.- --| .. ..++. +=|...=++
T Consensus 6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~--s~~~A-~~f--Aq------------~~~~~-~~k~y~syE-- 65 (351)
T KOG2741|consen 6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP--SLERA-KEF--AQ------------RHNIP-NPKAYGSYE-- 65 (351)
T ss_pred eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecc--cHHHH-HHH--HH------------hcCCC-CCccccCHH--
Confidence 58999999999999999998743 8999999997 44321 111 11 11111 111110011
Q ss_pred CCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCC
Q psy8544 79 KPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAP 122 (364)
Q Consensus 79 ~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsap 122 (364)
+.. ++..||+|.-++..-.-.|.+-..+..|- .|++--|
T Consensus 66 eLa----kd~~vDvVyi~~~~~qH~evv~l~l~~~K-~VL~EKP 104 (351)
T KOG2741|consen 66 ELA----KDPEVDVVYISTPNPQHYEVVMLALNKGK-HVLCEKP 104 (351)
T ss_pred HHh----cCCCcCEEEeCCCCccHHHHHHHHHHcCC-cEEeccc
Confidence 111 12368999988888777788877776553 4666555
No 198
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=82.29 E-value=3.3 Score=41.60 Aligned_cols=95 Identities=25% Similarity=0.400 Sum_probs=55.2
Q ss_pred eEEEEccChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEE-EEecCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIA-VFQKMKPE 81 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~-v~~~~~p~ 81 (364)
.|+|.|.|-||-..+.-+..- --.|+|| |+ +++.+....++.-+| .+|.++.. +-+ ...
T Consensus 188 tvaV~GlGgVGlaaI~gA~~agA~~IiAv-D~--~~~Kl~~A~~fGAT~--------------~vn~~~~~~vv~--~i~ 248 (366)
T COG1062 188 TVAVFGLGGVGLAAIQGAKAAGAGRIIAV-DI--NPEKLELAKKFGATH--------------FVNPKEVDDVVE--AIV 248 (366)
T ss_pred eEEEEeccHhHHHHHHHHHHcCCceEEEE-eC--CHHHHHHHHhcCCce--------------eecchhhhhHHH--HHH
Confidence 589999999998888766544 4577777 43 566555554443222 23443321 110 011
Q ss_pred CCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEE
Q psy8544 82 EIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119 (364)
Q Consensus 82 ~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVII 119 (364)
++ |+ .|+|++|||+|.-..++.+-.....+=+.|+|
T Consensus 249 ~~-T~-gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 249 EL-TD-GGADYAFECVGNVEVMRQALEATHRGGTSVII 284 (366)
T ss_pred Hh-cC-CCCCEEEEccCCHHHHHHHHHHHhcCCeEEEE
Confidence 11 22 38999999999877666554444443333444
No 199
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=82.05 E-value=6.1 Score=42.36 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=26.0
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.|.|.| .|.||+.+++.|.+++.+|+++..
T Consensus 82 vVLVTGATGgIG~aLAr~LLk~G~~Vval~R 112 (576)
T PLN03209 82 LAFVAGATGKVGSRTVRELLKLGFRVRAGVR 112 (576)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 588999 899999999999988888877654
No 200
>PLN02688 pyrroline-5-carboxylate reductase
Probab=81.96 E-value=3.3 Score=39.15 Aligned_cols=32 Identities=16% Similarity=0.458 Sum_probs=26.1
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC----cEEEEeCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT----PVVGINDP 34 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~----~ivaInd~ 34 (364)
|||+++|+|.+|..+++.|.+.++ +|+..++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r 36 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS 36 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC
Confidence 489999999999999999987755 67666454
No 201
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=81.80 E-value=2.8 Score=40.96 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=24.1
Q ss_pred eEEEEccChHHHHHHHHHhcCCC--cEEEEe
Q psy8544 4 KIGINGFGRIGRLVLREALHRNT--PVVGIN 32 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~--~ivaIn 32 (364)
||+|.|.|.+|+.++..|..+++ +|+-++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D 32 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLID 32 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence 89999999999999999887753 666554
No 202
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=81.68 E-value=6.4 Score=35.38 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=24.1
Q ss_pred ceEEEEccCh-HHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGR-IGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~-IGr~vlr~l~~~~~~ivaInd 33 (364)
-||.|+|.|. +|+.+++.|.+++..++.+|.
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r 76 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHS 76 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEEC
Confidence 4799999997 598899999887666655553
No 203
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=81.63 E-value=2 Score=42.19 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=30.4
Q ss_pred CCceEEEEccChHHHHHHHHHhcC-CCcEEEEeCC
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHR-NTPVVGINDP 34 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~-~~~ivaInd~ 34 (364)
|.++|-|.|||.||+..+|.|..+ .+|+|+.=+.
T Consensus 1 m~~~vvqyGtG~vGv~air~l~akpe~elvgawv~ 35 (350)
T COG3804 1 MSLRVVQYGTGSVGVAAIRGLLAKPELELVGAWVH 35 (350)
T ss_pred CCceeEEeccchHHHHHHHHHHcCCCCceEEEEec
Confidence 889999999999999999999877 9999987554
No 204
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=81.38 E-value=5.8 Score=37.07 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=25.0
Q ss_pred EEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 5 IGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 5 VaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
|-|.| +|.||+.+++.|.+++.+|+++..
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r 30 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTR 30 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeC
Confidence 45788 899999999999888889888775
No 205
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=81.23 E-value=2.8 Score=45.03 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=32.3
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHH
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYM 44 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~l 44 (364)
.+|-|.|+||+||.+.|.|.+++.+++.|.. |++..-.+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~---d~~~v~~~ 439 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLER---DISAVNLM 439 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEEC---CHHHHHHH
Confidence 4689999999999999999988999998853 67765444
No 206
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=80.91 E-value=0.81 Score=42.58 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.5
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCc
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTP 27 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ 27 (364)
.||+|.|.|-+|..+++.|...++.
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg 53 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVG 53 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCC
Confidence 5899999999999999999766554
No 207
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=80.70 E-value=2.9 Score=45.07 Aligned_cols=39 Identities=26% Similarity=0.432 Sum_probs=31.7
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHH
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYM 44 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~l 44 (364)
-+|-|.||||+||.+.|.|.+++++++.|.. |++..-.+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~---d~~~v~~~ 439 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDH---DPDHIETL 439 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEEC---CHHHHHHH
Confidence 3688999999999999999988999998843 66654333
No 208
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.68 E-value=0.92 Score=44.77 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=23.1
Q ss_pred ceEEEEccChHHHHHHHHHhcC--CCcEEEE
Q psy8544 3 YKIGINGFGRIGRLVLREALHR--NTPVVGI 31 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~--~~~ivaI 31 (364)
.||+|.|.|.||..++-.|..+ .-||+-+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~Li 34 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLV 34 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 6999999999999998888766 3356544
No 209
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=80.59 E-value=0.95 Score=41.64 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=23.9
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC-cEEEEe
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT-PVVGIN 32 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~-~ivaIn 32 (364)
-||.|.|.|-+|..+++.|...++ .++.+.
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD 52 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVD 52 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEec
Confidence 489999999999999999987765 444343
No 210
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=80.46 E-value=2.1 Score=41.52 Aligned_cols=39 Identities=26% Similarity=0.509 Sum_probs=30.0
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHH
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYM 44 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~l 44 (364)
+||||+|+|.+|+.+++.|.+.+.+|+..|. +++....+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr---~~~~~~~~ 39 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDR---NPEAVEAL 39 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEEC---CHHHHHHH
Confidence 3899999999999999999888888766554 45444333
No 211
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=80.18 E-value=11 Score=37.73 Aligned_cols=92 Identities=21% Similarity=0.357 Sum_probs=60.0
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEEI 83 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~~ 83 (364)
+|+|.|+|-+|...++.+.....+|+++.-. .+.+....+. |....++.+ +++.+
T Consensus 169 ~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~---~~K~e~a~~l--------------GAd~~i~~~--------~~~~~ 223 (339)
T COG1064 169 WVAVVGAGGLGHMAVQYAKAMGAEVIAITRS---EEKLELAKKL--------------GADHVINSS--------DSDAL 223 (339)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEeCC---hHHHHHHHHh--------------CCcEEEEcC--------Cchhh
Confidence 7999999999998888877667899999653 4443222221 222233321 12111
Q ss_pred C-CcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCC
Q psy8544 84 P-WSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAP 122 (364)
Q Consensus 84 ~-w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsap 122 (364)
+ ..+ -+|+++++.+ ..+.+.+-..++.|-+-|++-.|
T Consensus 224 ~~~~~-~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 224 EAVKE-IADAIIDTVG-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred HHhHh-hCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCC
Confidence 1 111 2899999999 88888888888887767777666
No 212
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=80.12 E-value=2.5 Score=40.94 Aligned_cols=31 Identities=19% Similarity=0.137 Sum_probs=26.2
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
+||+|.|.|.+|..+.+.|.+.+.++..++.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r 32 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWAR 32 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 6999999999999999999877777655543
No 213
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=80.02 E-value=10 Score=37.21 Aligned_cols=29 Identities=14% Similarity=0.429 Sum_probs=24.2
Q ss_pred eEEEEccChHHHHHHHHHhcCCCc-EEEEe
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTP-VVGIN 32 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~-ivaIn 32 (364)
+|.|.|.|.||..+++++...+.. |+++.
T Consensus 179 ~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~ 208 (358)
T TIGR03451 179 SVAVIGCGGVGDAAIAGAALAGASKIIAVD 208 (358)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Confidence 689999999999999988777775 76664
No 214
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=79.98 E-value=17 Score=35.89 Aligned_cols=95 Identities=20% Similarity=0.275 Sum_probs=53.2
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEEI 83 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~~ 83 (364)
+|.|+|.|.||..+++++...+..++++... .+....+++ .+|- + .. ++... +......
T Consensus 183 ~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~---~~~~~~~~~---~~Ga---~------~~-i~~~~-----~~~~~~~ 241 (357)
T PLN02514 183 RGGILGLGGVGHMGVKIAKAMGHHVTVISSS---DKKREEALE---HLGA---D------DY-LVSSD-----AAEMQEA 241 (357)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHH---hcCC---c------EE-ecCCC-----hHHHHHh
Confidence 6889999999999999887777777766542 333222221 1121 1 00 11000 0000011
Q ss_pred CCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCC
Q psy8544 84 PWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAP 122 (364)
Q Consensus 84 ~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsap 122 (364)
. .++|+||||+|...+.+.+-..++.|.+-+.+..+
T Consensus 242 ~---~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~ 277 (357)
T PLN02514 242 A---DSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVI 277 (357)
T ss_pred c---CCCcEEEECCCchHHHHHHHHHhccCCEEEEECCC
Confidence 1 16899999999655555566677777644444433
No 215
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=79.86 E-value=4.3 Score=39.16 Aligned_cols=42 Identities=21% Similarity=0.375 Sum_probs=30.5
Q ss_pred CCceEEEEccChHHHHHHHHHhcCCC----cEEEEeCCCCCHHHHHHHh
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHRNT----PVVGINDPHLSVDYLAYML 45 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~~~----~ivaInd~~~~~~~~a~ll 45 (364)
|.+||+++|+|.+|..+++.|.++++ +|...+ . +.+.+..+.
T Consensus 1 ~~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~-r--~~~~~~~l~ 46 (272)
T PRK12491 1 MNKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSD-L--NVSNLKNAS 46 (272)
T ss_pred CCCeEEEECccHHHHHHHHHHHHCCCCCCceEEEEC-C--CHHHHHHHH
Confidence 77899999999999999999987642 455443 3 455544443
No 216
>PLN02602 lactate dehydrogenase
Probab=79.46 E-value=1.1 Score=45.14 Aligned_cols=145 Identities=13% Similarity=0.178 Sum_probs=71.6
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC--cEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT--PVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKP 80 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~--~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p 80 (364)
.||+|.|.|.||..++-.|..+++ |++-+ |.. .+ .+.-...|-.|.. .+.+. ..|....+.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~Li-Di~--~~-~~~g~a~DL~~~~------------~~~~~-~~i~~~~dy 100 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALV-DVN--PD-KLRGEMLDLQHAA------------AFLPR-TKILASTDY 100 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEE-eCC--Cc-hhhHHHHHHHhhh------------hcCCC-CEEEeCCCH
Confidence 599999999999999988876632 45444 321 11 1111111322211 11121 123222233
Q ss_pred CCCCCcCCCccEEEeecCCCC----CHh------------hHHHHHhC--CCCEEEEeCCCCCCCe-EEcccCccccCCC
Q psy8544 81 EEIPWSQTGAEYIVESTGVFK----TKD------------TASAHLKG--GAKKVIITAPSKDAPM-FVCGVNLDKYDPS 141 (364)
Q Consensus 81 ~~~~w~~~gvDiV~estG~f~----s~e------------~a~~hl~a--GakkVIIsaps~d~p~-vV~gVN~~~~~~~ 141 (364)
+++ .++|+|+-++|.-. ++. .++.-.+. .+..+++|||.. .-+ ++... .-+. .
T Consensus 101 ~~~----~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvd-v~t~~~~k~--sg~p-~ 172 (350)
T PLN02602 101 AVT----AGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVD-VLTYVAWKL--SGFP-A 172 (350)
T ss_pred HHh----CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchH-HHHHHHHHH--hCCC-H
Confidence 434 38999999988743 331 11221122 233455577742 111 11100 0121 3
Q ss_pred CCeEecCCchhhhHHhHHHHHhhhcCeeEEEEE
Q psy8544 142 HSVVSNASCTTNCLAPLAKVIHDNFEILEGLMT 174 (364)
Q Consensus 142 ~~IISnaSCTTn~Lap~lk~L~d~fGI~~~~~T 174 (364)
.+||. .||.---+.+-..|.+.+|+..-.+.
T Consensus 173 ~rviG--~gt~LDs~R~r~~lA~~l~v~~~~V~ 203 (350)
T PLN02602 173 NRVIG--SGTNLDSSRFRFLIADHLDVNAQDVQ 203 (350)
T ss_pred HHEEe--ecchHHHHHHHHHHHHHhCCCcccee
Confidence 45653 45555566777778888887654433
No 217
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=79.44 E-value=4.1 Score=36.77 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=26.5
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHH
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYL 41 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~ 41 (364)
||||+|.|.+|+.+...+...+++|+-+ |. +++.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~-d~--~~~~l 35 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLY-DR--SPEAL 35 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE--S--SHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEE-EC--ChHHH
Confidence 7999999999999999888888887655 43 55544
No 218
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=79.40 E-value=2.6 Score=41.02 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=23.9
Q ss_pred CCceEEEEccChHHHHHHHHHhcCCCcE
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHRNTPV 28 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~~~~i 28 (364)
|.++|+|.|+|.||+.+.|.|.+++..+
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v 29 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVV 29 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeE
Confidence 3579999999999999999998885544
No 219
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=79.10 E-value=3.1 Score=33.88 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=27.0
Q ss_pred EEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHH
Q psy8544 5 IGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYL 41 (364)
Q Consensus 5 VaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~ 41 (364)
|-|.|+|++|+.+++.|.+++.+++.|.. +++..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~---d~~~~ 34 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDR---DPERV 34 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEES---SHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEEC---CcHHH
Confidence 56899999999999999987778888865 56543
No 220
>PLN00203 glutamyl-tRNA reductase
Probab=78.75 E-value=7.9 Score=41.03 Aligned_cols=31 Identities=19% Similarity=0.499 Sum_probs=26.0
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC-cEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT-PVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~-~ivaInd 33 (364)
.+|+|+|+|.+|+.+++.|..+++ +|+.+|.
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nR 298 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNR 298 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 479999999999999999988876 4666665
No 221
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=78.59 E-value=2.2 Score=40.73 Aligned_cols=136 Identities=19% Similarity=0.314 Sum_probs=72.5
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCC--------CCHHHHHHHhhccccccc-CCcceeecCCeEEECCEEEE
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPH--------LSVDYLAYMLKYDSTHGR-FKGDVKTEGNNIVVNGKKIA 73 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~--------~~~~~~a~ll~ydS~~g~-~~~~v~~~~~~l~i~gk~I~ 73 (364)
.||+|-|||.||+.+++.|.+.+..||+|.|.. .|.+.+..+.. . +|. +..-.....+. .+ .
T Consensus 33 ~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~--~-~~~~v~~~~~~~~~~----~~--~ 103 (244)
T PF00208_consen 33 KRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKE--E-RGSRVDDYPLESPDG----AE--Y 103 (244)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHH--H-HSSHSTTGTHTCSST----SE--E
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHH--H-hCCcccccccccccc----ee--E
Confidence 589999999999999999999999999995531 24454443321 1 111 11100000000 01 1
Q ss_pred EEecCCCCCCCCcCCCccEEEeec-CCCCCHhhHHHHHhCCCCEEEEeCCCCCCCeEEcccCccccCCCCCeEecCCchh
Q psy8544 74 VFQKMKPEEIPWSQTGAEYIVEST-GVFKTKDTASAHLKGGAKKVIITAPSKDAPMFVCGVNLDKYDPSHSVVSNASCTT 152 (364)
Q Consensus 74 v~~~~~p~~~~w~~~gvDiV~est-G~f~s~e~a~~hl~aGakkVIIsaps~d~p~vV~gVN~~~~~~~~~IISnaSCTT 152 (364)
+ .. .+++ |. ..+||.+=|+ +.-++.+.++..++.|||- |+-+. +-|+- ++-.. .+. ++.|+-.|.=..
T Consensus 104 ~-~~--~~~i-l~-~~~DiliP~A~~~~I~~~~~~~~i~~~aki-IvegA--N~p~t-~~a~~-~L~-~rGI~viPD~~a 172 (244)
T PF00208_consen 104 I-PN--DDEI-LS-VDCDILIPCALGNVINEDNAPSLIKSGAKI-IVEGA--NGPLT-PEADE-ILR-ERGILVIPDFLA 172 (244)
T ss_dssp E-CH--HCHG-GT-SSSSEEEEESSSTSBSCHHHCHCHHTT-SE-EEESS--SSSBS-HHHHH-HHH-HTT-EEE-HHHH
T ss_pred e-cc--cccc-cc-ccccEEEEcCCCCeeCHHHHHHHHhccCcE-EEeCc--chhcc-HHHHH-HHH-HCCCEEEcchhh
Confidence 1 10 0111 33 4799999987 7778888887677888853 44322 23321 22222 222 355666666556
Q ss_pred hhHHhH
Q psy8544 153 NCLAPL 158 (364)
Q Consensus 153 n~Lap~ 158 (364)
|+-..+
T Consensus 173 NaGGvi 178 (244)
T PF00208_consen 173 NAGGVI 178 (244)
T ss_dssp TTHHHH
T ss_pred cCCCeE
Confidence 654443
No 222
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=78.56 E-value=5.9 Score=39.07 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=28.2
Q ss_pred eEEEEccChHHHHHHHHHhcCCC-cEEEEeCCCCCHHHHHHH
Q psy8544 4 KIGINGFGRIGRLVLREALHRNT-PVVGINDPHLSVDYLAYM 44 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~-~ivaInd~~~~~~~~a~l 44 (364)
+|.|.|.|.||..+++++...+. .++++.. +.+.+.++
T Consensus 190 ~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~---~~~~~~~~ 228 (369)
T cd08301 190 TVAIFGLGAVGLAVAEGARIRGASRIIGVDL---NPSKFEQA 228 (369)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHH
Confidence 68999999999999998877777 5776643 34444444
No 223
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=78.51 E-value=2.7 Score=40.81 Aligned_cols=38 Identities=21% Similarity=0.393 Sum_probs=29.6
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHH
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYM 44 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~l 44 (364)
||||+|+|.+|+.+++.|.+.+++|+..|. +++....+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr---~~~~~~~~ 39 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDV---NQEAVDVA 39 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEEC---CHHHHHHH
Confidence 899999999999999999888888876553 45544333
No 224
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=78.34 E-value=14 Score=36.96 Aligned_cols=94 Identities=17% Similarity=0.212 Sum_probs=51.5
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEEI 83 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~~ 83 (364)
+|.|.|.|.||...++++...+..++++... +.+....+-++ |- .-.++.+.. ......
T Consensus 181 ~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~l----Ga----------~~~i~~~~~-----~~v~~~ 239 (375)
T PLN02178 181 RLGVNGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRL----GA----------DSFLVTTDS-----QKMKEA 239 (375)
T ss_pred EEEEEcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhC----CC----------cEEEcCcCH-----HHHHHh
Confidence 6889999999999999887777777766432 22212122111 11 011221100 000011
Q ss_pred CCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeC
Q psy8544 84 PWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITA 121 (364)
Q Consensus 84 ~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsa 121 (364)
. .++|+||||+|.-...+.+-..++.|.+-+.+..
T Consensus 240 --~-~~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 240 --V-GTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred --h-CCCcEEEECCCcHHHHHHHHHhhcCCCEEEEEcc
Confidence 1 1689999999975455555566666664444443
No 225
>KOG4039|consensus
Probab=78.29 E-value=7.1 Score=36.12 Aligned_cols=31 Identities=23% Similarity=0.111 Sum_probs=24.8
Q ss_pred ceEEEEc-cChHHHHHHHHHhcC-CC-cEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHR-NT-PVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~-~~-~ivaInd 33 (364)
+.+-|+| +|..|+.+++.+.|. .| .|++|-.
T Consensus 19 ~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~R 52 (238)
T KOG4039|consen 19 MSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILR 52 (238)
T ss_pred cceEEEeccccccHHHHHHHHhcccceeEEEEEe
Confidence 5688999 999999999999988 55 5555543
No 226
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=78.10 E-value=2.8 Score=40.77 Aligned_cols=40 Identities=28% Similarity=0.527 Sum_probs=30.8
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHh
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYML 45 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll 45 (364)
|||||+|+|++|..+.+.|.+++++|+..|. +++....+.
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr---~~~~~~~l~ 40 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDH---DQDAVKAMK 40 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEEC---CHHHHHHHH
Confidence 3899999999999999999888888876643 455544443
No 227
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=77.96 E-value=2.4 Score=40.75 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=29.2
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHH
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAY 43 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ 43 (364)
||||+|+|.+|+.+.+.|.+.+++|+..+. +++....
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr---~~~~~~~ 37 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTI---GPEVADE 37 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcC---CHHHHHH
Confidence 699999999999999999888888876653 4554433
No 228
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=77.88 E-value=15 Score=36.00 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=21.8
Q ss_pred eEEEEccChHHHHHHHHHhc-C-CCcEEEEe
Q psy8544 4 KIGINGFGRIGRLVLREALH-R-NTPVVGIN 32 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~-~-~~~ivaIn 32 (364)
+|.|.|.|.||...++++.. . ...|+++.
T Consensus 166 ~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~ 196 (341)
T cd08237 166 VIGVWGDGNLGYITALLLKQIYPESKLVVFG 196 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence 68999999999988887754 3 45666653
No 229
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=77.40 E-value=3.1 Score=42.29 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=27.7
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
|+|.|.|+|++|+.+++.|.+++.+++.|..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~ 31 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDT 31 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEEC
Confidence 4899999999999999999888889988854
No 230
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=77.23 E-value=4.7 Score=44.31 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=28.9
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHH
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAY 43 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ 43 (364)
||||+|.|.+|..+..++...+++|+-+ |. +++.+..
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~-d~--~~~~l~~ 351 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMK-DI--NQHSLDL 351 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEE-eC--CHHHHHH
Confidence 7999999999999999888778887655 43 4555443
No 231
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=77.20 E-value=12 Score=38.63 Aligned_cols=83 Identities=24% Similarity=0.273 Sum_probs=49.7
Q ss_pred ceEEEEccChHHHH-HHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCC
Q psy8544 3 YKIGINGFGRIGRL-VLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPE 81 (364)
Q Consensus 3 irVaInG~G~IGr~-vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~ 81 (364)
.||.|.|.|..|+. ++|.|.+++.+|.+ .|.... +....|.++ | +.++...+++
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~-~D~~~~-~~~~~l~~~---------------------g--i~~~~~~~~~ 62 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSG-SDLKES-AVTQRLLEL---------------------G--AIIFIGHDAE 62 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEE-ECCCCC-hHHHHHHHC---------------------C--CEEeCCCCHH
Confidence 47999999999999 79999988888644 554211 122222110 1 1121122333
Q ss_pred CCCCcCCCccEEEeecCCCCCHhhHHHHHhCCC
Q psy8544 82 EIPWSQTGAEYIVESTGVFKTKDTASAHLKGGA 114 (364)
Q Consensus 82 ~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGa 114 (364)
.+. +.|+|+=|.|.-.+.+....+.+.|.
T Consensus 63 ~~~----~~d~vv~spgi~~~~~~~~~a~~~~i 91 (461)
T PRK00421 63 NIK----DADVVVYSSAIPDDNPELVAARELGI 91 (461)
T ss_pred HCC----CCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 332 57888888888766555555555665
No 232
>KOG0068|consensus
Probab=77.12 E-value=2.9 Score=42.04 Aligned_cols=30 Identities=33% Similarity=0.535 Sum_probs=24.8
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.+||.||||||+++.+.+...++.++.-.+
T Consensus 148 TLgvlG~GrIGseVA~r~k~~gm~vI~~dp 177 (406)
T KOG0068|consen 148 TLGVLGLGRIGSEVAVRAKAMGMHVIGYDP 177 (406)
T ss_pred EEEEeecccchHHHHHHHHhcCceEEeecC
Confidence 589999999999999988776777765544
No 233
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.07 E-value=16 Score=37.85 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=52.0
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCC--CHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHL--SVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKP 80 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~--~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p 80 (364)
-||+|.|+|+-|+..+|.|.+++.+++. .|... +......|- ++... ++....+
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~-~d~~~~~~~~~~~~l~---------------~~~~~--------~~~~~~~ 64 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQAL-TLFCNAVEAREVGALA---------------DAALL--------VETEASA 64 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEE-EcCCCcccchHHHHHh---------------hcCEE--------EeCCCCh
Confidence 3799999999999999999988777543 45310 111000110 01111 1122223
Q ss_pred CCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEe
Q psy8544 81 EEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIIT 120 (364)
Q Consensus 81 ~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIs 120 (364)
+.+. +.|+||-+.|.-.+.+....+.+.|. -|++
T Consensus 65 ~~~~----~~d~vV~SpgI~~~~p~~~~a~~~~i--~i~~ 98 (468)
T PRK04690 65 QRLA----AFDVVVKSPGISPYRPEALAAAARGT--PFIG 98 (468)
T ss_pred HHcc----CCCEEEECCCCCCCCHHHHHHHHcCC--cEEE
Confidence 3332 57999999998777666666666666 3454
No 234
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=76.84 E-value=9.5 Score=39.46 Aligned_cols=81 Identities=14% Similarity=0.233 Sum_probs=54.9
Q ss_pred ceEEEEcc----ChHHHHHHHHHhcCCC--cEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEe
Q psy8544 3 YKIGINGF----GRIGRLVLREALHRNT--PVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQ 76 (364)
Q Consensus 3 irVaInG~----G~IGr~vlr~l~~~~~--~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~ 76 (364)
-+|+|+|. |.+|+.+++.|.+++| +|..||-- |+. +.|. +++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~------------~~~-----------------i~G~--~~~- 55 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPK------------AGE-----------------ILGV--KAY- 55 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCC------------CCc-----------------cCCc--ccc-
Confidence 47999994 8899999999988766 68777642 121 1221 121
Q ss_pred cCCCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEE
Q psy8544 77 KMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119 (364)
Q Consensus 77 ~~~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVII 119 (364)
.+.++++ ..+|+++-+++.....+..+...+.|+|.+||
T Consensus 56 -~sl~~lp---~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi 94 (447)
T TIGR02717 56 -PSVLEIP---DPVDLAVIVVPAKYVPQVVEECGEKGVKGAVV 94 (447)
T ss_pred -CCHHHCC---CCCCEEEEecCHHHHHHHHHHHHhcCCCEEEE
Confidence 2233443 35788888888777777777778888887765
No 235
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=76.64 E-value=22 Score=34.44 Aligned_cols=86 Identities=20% Similarity=0.289 Sum_probs=48.8
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEEI 83 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~~ 83 (364)
+|.|.|.|.+|+.+++++...+..++.+.. +.+...++.++ | . + ..++.+.... ...+
T Consensus 172 ~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~----g---~------~-~vi~~~~~~~-----~~~~ 229 (337)
T cd05283 172 RVGVVGIGGLGHLAVKFAKALGAEVTAFSR---SPSKKEDALKL----G---A------D-EFIATKDPEA-----MKKA 229 (337)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEcC---CHHHHHHHHHc----C---C------c-EEecCcchhh-----hhhc
Confidence 688888999999998887776777766643 23333333221 1 0 0 1111110000 0111
Q ss_pred CCcCCCccEEEeecCCCCCHhhHHHHHhCCC
Q psy8544 84 PWSQTGAEYIVESTGVFKTKDTASAHLKGGA 114 (364)
Q Consensus 84 ~w~~~gvDiV~estG~f~s~e~a~~hl~aGa 114 (364)
..++|+||+|+|.-...+.+-.+++.+.
T Consensus 230 ---~~~~d~v~~~~g~~~~~~~~~~~l~~~G 257 (337)
T cd05283 230 ---AGSLDLIIDTVSASHDLDPYLSLLKPGG 257 (337)
T ss_pred ---cCCceEEEECCCCcchHHHHHHHhcCCC
Confidence 2379999999987644556666776555
No 236
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=76.57 E-value=5.5 Score=37.60 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=26.3
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcE--EEEeCCCCCHHHH
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPV--VGINDPHLSVDYL 41 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~i--vaInd~~~~~~~~ 41 (364)
|||||+|+|++|+.+++.|...++++ +.+.+. +++..
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r--~~~~~ 39 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR--NAQIA 39 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECC--CHHHH
Confidence 38999999999999999998664332 344443 45543
No 237
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=76.37 E-value=3.3 Score=42.37 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=31.6
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHH
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAY 43 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ 43 (364)
+||+|.|.|.+|..+...|.+++++|++++- +++.+..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~---~~~~v~~ 41 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDI---NQHAVDT 41 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeC---CHHHHHH
Confidence 6999999999999999999988889888753 5665543
No 238
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=76.32 E-value=3.3 Score=43.40 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=25.6
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEe
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
-+|+|.|+|+|||.+++.|...++.|+..+
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e 284 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTE 284 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 379999999999999999987788876553
No 239
>PRK05865 hypothetical protein; Provisional
Probab=76.27 E-value=8 Score=43.43 Aligned_cols=31 Identities=32% Similarity=0.533 Sum_probs=27.3
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
|||.|.| +|.||+.+++.|.+++.+|+++..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R 32 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIAR 32 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 3899999 899999999999988888887764
No 240
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=76.18 E-value=3.5 Score=40.17 Aligned_cols=32 Identities=22% Similarity=0.107 Sum_probs=26.8
Q ss_pred CceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 2 AYKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.+||+|.|+|.+|+.+.+.|...+.+|...+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r 35 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSR 35 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeC
Confidence 36999999999999999999887778765543
No 241
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=76.12 E-value=25 Score=37.22 Aligned_cols=37 Identities=19% Similarity=0.122 Sum_probs=27.7
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHH
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLA 42 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a 42 (364)
-||.|.|.|.||...++.+...+-+|+++ |. +++.+.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~-D~--~~~rle 202 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAF-DT--RPEVAE 202 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEE-eC--CHHHHH
Confidence 48999999999999999887766665544 54 455443
No 242
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=75.98 E-value=1 Score=44.48 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=20.1
Q ss_pred eEEEEccChHHHHHHHHHhcCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNT 26 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~ 26 (364)
||.|+|.|-+|-.+++.|...++
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV 23 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV 23 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC
Confidence 68999999999999999976544
No 243
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=75.82 E-value=1.5 Score=40.49 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=24.2
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.||+|.|.|.+|..++..|...++.=+.+-|
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD 52 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVD 52 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEC
Confidence 5899999999999999999877774233334
No 244
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=75.42 E-value=3.4 Score=42.01 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=29.8
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHH
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLA 42 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a 42 (364)
|||+|+|.|.+|..+...|.+.+.+|+.++- +++.+.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~---~~~~v~ 37 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDI---DQEKVD 37 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEEC---CHHHHH
Confidence 3899999999999999999888888877753 455443
No 245
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=75.42 E-value=5.3 Score=42.27 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=29.6
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHH
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYL 41 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~ 41 (364)
+|-|.|+|++||.+.|.|.+++.+++.|.. |++..
T Consensus 419 hiiI~G~G~~G~~la~~L~~~g~~vvvId~---d~~~~ 453 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAAGIPLVVIET---SRTRV 453 (558)
T ss_pred CEEEECCChHHHHHHHHHHHCCCCEEEEEC---CHHHH
Confidence 578999999999999999988889988864 56554
No 246
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=75.39 E-value=3.2 Score=45.60 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=28.2
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHH
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLA 42 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a 42 (364)
||+|+|.|.+|+-+...+...+++|+-+ |. +.+.+.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~-d~--~~~~l~ 350 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMK-DI--NQKALD 350 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEE-eC--CHHHHH
Confidence 7999999999999999888778887655 43 455443
No 247
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=75.39 E-value=16 Score=34.88 Aligned_cols=91 Identities=21% Similarity=0.298 Sum_probs=51.2
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
+|-|+| .|.+|+.+++++...+..++++.. +.+....+.++ |- +.+ ++.+.-.+. +...
T Consensus 146 ~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~---s~~~~~~l~~~----Ga---------~~v-i~~~~~~~~--~~v~- 205 (329)
T cd08294 146 TVVVNGAAGAVGSLVGQIAKIKGCKVIGCAG---SDDKVAWLKEL----GF---------DAV-FNYKTVSLE--EALK- 205 (329)
T ss_pred EEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHc----CC---------CEE-EeCCCccHH--HHHH-
Confidence 688999 799999999988877888877654 34444444432 21 111 111000000 0000
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCE
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKK 116 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakk 116 (364)
.+...++|+|||++|. ...+.+-.+++.+.+-
T Consensus 206 -~~~~~gvd~vld~~g~-~~~~~~~~~l~~~G~i 237 (329)
T cd08294 206 -EAAPDGIDCYFDNVGG-EFSSTVLSHMNDFGRV 237 (329)
T ss_pred -HHCCCCcEEEEECCCH-HHHHHHHHhhccCCEE
Confidence 0112379999999986 3445555666666533
No 248
>PLN02740 Alcohol dehydrogenase-like
Probab=75.18 E-value=8.3 Score=38.42 Aligned_cols=29 Identities=28% Similarity=0.574 Sum_probs=24.3
Q ss_pred eEEEEccChHHHHHHHHHhcCCC-cEEEEe
Q psy8544 4 KIGINGFGRIGRLVLREALHRNT-PVVGIN 32 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~-~ivaIn 32 (364)
+|.|.|.|.||..+++++..++. .|+++.
T Consensus 201 ~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~ 230 (381)
T PLN02740 201 SVAIFGLGAVGLAVAEGARARGASKIIGVD 230 (381)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcEEEEc
Confidence 68999999999999998887777 576664
No 249
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=75.03 E-value=2.8 Score=46.19 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=30.3
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHh
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYML 45 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll 45 (364)
||||+|.|.+|..++..+...+++|+-+ |. +++.+....
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~G~~V~l~-d~--~~~~l~~~~ 375 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDKGLKTVLK-DA--TPAGLDRGQ 375 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEe-cC--CHHHHHHHH
Confidence 6999999999999999888778887655 54 566655443
No 250
>KOG0069|consensus
Probab=74.95 E-value=2.3 Score=42.62 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=19.8
Q ss_pred ceEEEEccChHHHHHHHHHhcCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRN 25 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~ 25 (364)
-+|+|.|+|+||+.+++-|...+
T Consensus 163 K~vgilG~G~IG~~ia~rL~~Fg 185 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPFG 185 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhcc
Confidence 48999999999999999886544
No 251
>PRK08618 ornithine cyclodeaminase; Validated
Probab=74.63 E-value=7.1 Score=38.51 Aligned_cols=91 Identities=19% Similarity=0.184 Sum_probs=52.4
Q ss_pred ceEEEEccChHHHHHHHHHhc-CCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALH-RNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPE 81 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~-~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~ 81 (364)
-+|+|.|.|.+|+..++++.. ++++-|.|-+. +++....+.+. .+.. + +-++..+ .+++
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r--~~~~a~~~~~~----------~~~~-----~-~~~~~~~--~~~~ 187 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR--TFEKAYAFAQE----------IQSK-----F-NTEIYVV--NSAD 187 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECC--CHHHHHHHHHH----------HHHh-----c-CCcEEEe--CCHH
Confidence 479999999999999988764 37777777765 45544333310 0000 0 0011121 2222
Q ss_pred CCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEe
Q psy8544 82 EIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIIT 120 (364)
Q Consensus 82 ~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIs 120 (364)
+.- .++|+|+-||+.... ... ..++.|+ .|++
T Consensus 188 ~~~---~~aDiVi~aT~s~~p-~i~-~~l~~G~--hV~~ 219 (325)
T PRK08618 188 EAI---EEADIIVTVTNAKTP-VFS-EKLKKGV--HINA 219 (325)
T ss_pred HHH---hcCCEEEEccCCCCc-chH-HhcCCCc--EEEe
Confidence 111 268999999986633 334 6777777 5554
No 252
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=74.60 E-value=2.6 Score=42.12 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=24.3
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.||.|+|.|.+|..+++.|...++.-+.|-|
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD 55 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIAD 55 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 5899999999999999999877763333333
No 253
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.54 E-value=17 Score=37.13 Aligned_cols=89 Identities=19% Similarity=0.151 Sum_probs=52.4
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEe-cCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQ-KMKPEE 82 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~-~~~p~~ 82 (364)
-|+|.|.|.+|+.++|.|.+++.+|. +.|....+.....|-+ .+ -| +.+.. ..+++.
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G~~v~-~~D~~~~~~~~~~l~~--------------~~-----~g--~~~~~~~~~~~~ 65 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQGIPFA-VMDSREQPPGLDTLAR--------------EF-----PD--VELRCGGFDCEL 65 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCCCeEE-EEeCCCCchhHHHHHh--------------hc-----CC--cEEEeCCCChHH
Confidence 58999999999999999998887754 4554211111111110 00 01 22221 234444
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEe
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIIT 120 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIs 120 (364)
+. +.|+|+-|.|.-.+.+....+.+.|. -|++
T Consensus 66 ~~----~~d~vV~sp~i~~~~p~~~~a~~~~i--~i~~ 97 (448)
T PRK03803 66 LV----QASEIIISPGLALDTPALRAAAAMGI--EVIG 97 (448)
T ss_pred hc----CCCEEEECCCCCCCCHHHHHHHHCCC--cEEE
Confidence 43 57899999888776665656666676 4454
No 254
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.34 E-value=6.7 Score=37.71 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=30.6
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHh
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYML 45 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll 45 (364)
||+|+|.|.+|+.+...|.+++.+|+.++ . +++.+..+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d-~--~~~~~~~~~ 41 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVD-I--KQEQLESAQ 41 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEe-C--CHHHHHHHH
Confidence 79999999999999999988888877664 3 566555543
No 255
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=74.05 E-value=1.5 Score=43.24 Aligned_cols=28 Identities=36% Similarity=0.428 Sum_probs=21.8
Q ss_pred eEEEEccChHHHHHHHHHhcCCC--cEEEE
Q psy8544 4 KIGINGFGRIGRLVLREALHRNT--PVVGI 31 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~--~ivaI 31 (364)
||+|+|.|.||..++-.|..+++ |++-+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~ 30 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLI 30 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 79999999999999887776633 45444
No 256
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=73.94 E-value=35 Score=30.12 Aligned_cols=30 Identities=17% Similarity=0.032 Sum_probs=25.5
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEe
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
-||-|+|-|.||...++.|.+.+-+|+.|+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 379999999999999999988877776664
No 257
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=73.92 E-value=14 Score=35.82 Aligned_cols=94 Identities=19% Similarity=0.193 Sum_probs=53.4
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEEI 83 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~~ 83 (364)
+|.|.|.|.+|+.+++++...+.+++++... .+.+..+-++. - .-.++.++-.+. +.. .
T Consensus 166 ~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~---~~~~~~~~~~g----~----------~~~i~~~~~~~~--~~~--~ 224 (333)
T cd08296 166 LVAVQGIGGLGHLAVQYAAKMGFRTVAISRG---SDKADLARKLG----A----------HHYIDTSKEDVA--EAL--Q 224 (333)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCC---hHHHHHHHHcC----C----------cEEecCCCccHH--HHH--H
Confidence 6889999999999999888778887777542 33333332221 0 111221110000 001 1
Q ss_pred CCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEe
Q psy8544 84 PWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIIT 120 (364)
Q Consensus 84 ~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIs 120 (364)
.| .++|++++++|.-...+.+-.+++.+..-|.+.
T Consensus 225 ~~--~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 225 EL--GGAKLILATAPNAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred hc--CCCCEEEECCCchHHHHHHHHHcccCCEEEEEe
Confidence 12 268999999875445555666776665444343
No 258
>PRK07201 short chain dehydrogenase; Provisional
Probab=73.91 E-value=32 Score=36.66 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=26.3
Q ss_pred ceEEEEc-cChHHHHHHHHHhc--CCCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALH--RNTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~--~~~~ivaInd 33 (364)
|||-|-| +|.||+.+++.|.+ ++.+|+++..
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R 34 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVR 34 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 3899999 99999999999984 4778887765
No 259
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=73.88 E-value=16 Score=37.08 Aligned_cols=90 Identities=23% Similarity=0.334 Sum_probs=52.1
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHH--HHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYL--AYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPE 81 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~--a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~ 81 (364)
||.|.|.|.+|+.++|.|.+++.+|. +.|.......- ..+++. . .| |.++...+++
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~-~sD~~~~~~~~~~~~~~~~--------------~-----~g--i~~~~g~~~~ 58 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVT-VTDLKPNEELEPSMGQLRL--------------N-----EG--SVLHTGLHLE 58 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEE-EEeCCCCccchhHHHHHhh--------------c-----cC--cEEEecCchH
Confidence 68999999999999999998887754 45642111100 011110 0 01 1122123344
Q ss_pred CCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeC
Q psy8544 82 EIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITA 121 (364)
Q Consensus 82 ~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsa 121 (364)
++. +.|+|+=+.|.-.+.+....+.+.|. -|++-
T Consensus 59 ~~~----~~d~vv~sp~i~~~~p~~~~a~~~~i--~i~~~ 92 (433)
T TIGR01087 59 DLN----NADLVVKSPGIPPDHPLVQAAAKRGI--PVVGD 92 (433)
T ss_pred Hhc----cCCEEEECCCCCCCCHHHHHHHHCCC--cEEEH
Confidence 442 57999999998766555555666676 44543
No 260
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=73.80 E-value=4.6 Score=38.71 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=25.5
Q ss_pred CceEEEEccChHHHHHHHHHhcCC----CcEEEEeC
Q psy8544 2 AYKIGINGFGRIGRLVLREALHRN----TPVVGIND 33 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~~----~~ivaInd 33 (364)
.+||+|+|.|.+|+.+++.|.+++ .+|+..+.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r 38 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNR 38 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence 369999999999999999998764 45655543
No 261
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=73.80 E-value=4.4 Score=39.35 Aligned_cols=39 Identities=13% Similarity=0.228 Sum_probs=29.7
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHH
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYM 44 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~l 44 (364)
.||+|+|.|.+|..+.+.|.+++.+|...|. +++.+..+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~---~~~~~~~~ 40 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDV---NPQAVDAL 40 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcC---CHHHHHHH
Confidence 4899999999999999999887778765543 45544333
No 262
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=73.80 E-value=4.5 Score=39.65 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=27.5
Q ss_pred CceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 2 AYKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
++||+|+|.|.+|..+.+.|...+.+|...+.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r 35 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWAR 35 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 36999999999999999999887778776654
No 263
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=73.75 E-value=27 Score=35.26 Aligned_cols=31 Identities=26% Similarity=0.259 Sum_probs=24.7
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDP 34 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~ 34 (364)
+|.|.|.|.||..+++++...+..++.+.+.
T Consensus 188 ~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~ 218 (393)
T TIGR02819 188 TVYIAGAGPVGLAAAASAQLLGAAVVIVGDL 218 (393)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 6889899999999999887777776555554
No 264
>PLN02827 Alcohol dehydrogenase-like
Probab=73.70 E-value=21 Score=35.56 Aligned_cols=28 Identities=29% Similarity=0.531 Sum_probs=23.0
Q ss_pred eEEEEccChHHHHHHHHHhcCCCc-EEEE
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTP-VVGI 31 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~-ivaI 31 (364)
+|.|.|.|.||..+++++...+.. ++++
T Consensus 196 ~VlV~G~G~vG~~~iqlak~~G~~~vi~~ 224 (378)
T PLN02827 196 SVVIFGLGTVGLSVAQGAKLRGASQIIGV 224 (378)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 688999999999999988777775 5554
No 265
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=73.69 E-value=4.5 Score=39.28 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=24.1
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC--cEEEEe
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT--PVVGIN 32 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~--~ivaIn 32 (364)
.||+|+|+|.+|+.+.+.|...++ +|..++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~d 38 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGAD 38 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEE
Confidence 589999999999999999887653 555443
No 266
>PRK05086 malate dehydrogenase; Provisional
Probab=73.66 E-value=17 Score=35.85 Aligned_cols=29 Identities=17% Similarity=0.167 Sum_probs=21.3
Q ss_pred ceEEEEc-cChHHHHHHHHHhc-C--CCcEEEE
Q psy8544 3 YKIGING-FGRIGRLVLREALH-R--NTPVVGI 31 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~-~--~~~ivaI 31 (364)
+||+|.| .|.||+.++..|.. . .-+++.+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~ 33 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLY 33 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEE
Confidence 4999999 59999999987754 2 2355444
No 267
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.58 E-value=15 Score=37.40 Aligned_cols=93 Identities=24% Similarity=0.243 Sum_probs=53.8
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
.+|.|.|.|++|+.+++.|.+++.+|+.+ |.. +.+.+...++ ..+..+ +.++....++.
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~-d~~-~~~~~~~~~~----------~l~~~~---------~~~~~~~~~~~ 64 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILT-DEK-EEDQLKEALE----------ELGELG---------IELVLGEYPEE 64 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE-eCC-chHHHHHHHH----------HHHhcC---------CEEEeCCcchh
Confidence 48999999999999999999988776655 431 2121111110 000001 11221111221
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeC
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITA 121 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsa 121 (364)
+ ..+.|+||-++|.....+....+.+.|. .|++-
T Consensus 65 ~---~~~~d~vv~~~g~~~~~~~~~~a~~~~i--~~~~~ 98 (450)
T PRK14106 65 F---LEGVDLVVVSPGVPLDSPPVVQAHKKGI--EVIGE 98 (450)
T ss_pred H---hhcCCEEEECCCCCCCCHHHHHHHHCCC--cEEeH
Confidence 1 1268999999998777766666666666 45543
No 268
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.57 E-value=17 Score=36.94 Aligned_cols=86 Identities=19% Similarity=0.310 Sum_probs=52.8
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
-||.|.|+|.+|+.++++|.+++.+|++..+- ++.+ .+ ....++. . ...++.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~---~~~~---~~-----------~~~~~~~---------~--~~~~~~ 55 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKS---LEAL---QS-----------CPYIHER---------Y--LENAEE 55 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCC---cccc---ch-----------hHHHhhh---------h--cCCcHH
Confidence 48999999999999999998887776655432 1110 00 0000000 0 011222
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeC
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITA 121 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsa 121 (364)
+. .+.|+||-+.|.--..+....++++|++ +++.
T Consensus 56 ~~---~~~dlvV~s~gi~~~~~~l~~A~~~g~~--vv~~ 89 (418)
T PRK00683 56 FP---EQVDLVVRSPGIKKEHPWVQAAIASHIP--VVTD 89 (418)
T ss_pred Hh---cCCCEEEECCCCCCCcHHHHHHHHCCCc--EEEH
Confidence 21 1578999998887777788888889984 5554
No 269
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=73.16 E-value=14 Score=36.23 Aligned_cols=61 Identities=21% Similarity=0.173 Sum_probs=38.8
Q ss_pred CccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCC-CCCCCeEEcccCccccCCCCCeEecCCchh
Q psy8544 89 GAEYIVESTGVFKTKDTASAHLKGGAKKVIITAP-SKDAPMFVCGVNLDKYDPSHSVVSNASCTT 152 (364)
Q Consensus 89 gvDiV~estG~f~s~e~a~~hl~aGakkVIIsap-s~d~p~vV~gVN~~~~~~~~~IISnaSCTT 152 (364)
..|++|..+......+-.+.|++-|| +|+++. .+|+.+-|-.+|.=.+- ...+|+.++-.|
T Consensus 230 ~e~i~v~vAs~~~g~~I~pq~lkpg~--~ivD~g~P~dvd~~vk~~~~V~Ii-~GGlV~~s~~it 291 (351)
T COG5322 230 QEDILVWVASMPKGVEIFPQHLKPGC--LIVDGGYPKDVDTSVKNVGGVRII-PGGLVEHSLDIT 291 (351)
T ss_pred ccceEEEEeecCCCceechhhccCCe--EEEcCCcCcccccccccCCCeEEe-cCccccCccccc
Confidence 45666666655555666789999999 999987 35766666666643322 235565554433
No 270
>KOG0022|consensus
Probab=73.02 E-value=14 Score=37.05 Aligned_cols=89 Identities=22% Similarity=0.388 Sum_probs=49.2
Q ss_pred eEEEEccChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEE--EEEecCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKI--AVFQKMKP 80 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I--~v~~~~~p 80 (364)
.|||.|.|.||-.++.-...+ -=.|++| |+ +++...+.-++ | .+ + .+|-+.. ++ +|. .
T Consensus 195 tvAVfGLG~VGLav~~Gaka~GAsrIIgv-Di--N~~Kf~~ak~f----G---aT-e------~iNp~d~~~~i-~ev-i 255 (375)
T KOG0022|consen 195 TVAVFGLGGVGLAVAMGAKAAGASRIIGV-DI--NPDKFEKAKEF----G---AT-E------FINPKDLKKPI-QEV-I 255 (375)
T ss_pred EEEEEecchHHHHHHHhHHhcCcccEEEE-ec--CHHHHHHHHhc----C---cc-e------ecChhhccccH-HHH-H
Confidence 589999999999888776655 4567766 33 44443222211 1 11 1 1221100 11 111 0
Q ss_pred CCCCCcCCCccEEEeecCCCCCHhhHHHHHhCC
Q psy8544 81 EEIPWSQTGAEYIVESTGVFKTKDTASAHLKGG 113 (364)
Q Consensus 81 ~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aG 113 (364)
.+ -.+.|+||-|||+|.-..+..|-.....|
T Consensus 256 ~E--mTdgGvDysfEc~G~~~~m~~al~s~h~G 286 (375)
T KOG0022|consen 256 IE--MTDGGVDYSFECIGNVSTMRAALESCHKG 286 (375)
T ss_pred HH--HhcCCceEEEEecCCHHHHHHHHHHhhcC
Confidence 01 12359999999999887776555444455
No 271
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=73.00 E-value=5.1 Score=39.10 Aligned_cols=33 Identities=27% Similarity=0.238 Sum_probs=26.3
Q ss_pred CCceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
|.|||+|+|.|.||..+.-.|.+.+.+|+.+..
T Consensus 1 ~~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r 33 (305)
T PRK05708 1 MSMTWHILGAGSLGSLWACRLARAGLPVRLILR 33 (305)
T ss_pred CCceEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence 578999999999999988888766666655543
No 272
>PRK06444 prephenate dehydrogenase; Provisional
Probab=72.97 E-value=4 Score=37.72 Aligned_cols=26 Identities=27% Similarity=0.218 Sum_probs=22.0
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcE
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPV 28 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~i 28 (364)
|||+|+| .|++||.+.+.+.+.+++|
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v 27 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGV 27 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEE
Confidence 4899999 8999999999887656665
No 273
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.77 E-value=20 Score=37.22 Aligned_cols=83 Identities=16% Similarity=0.105 Sum_probs=49.9
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEec-CCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQK-MKPE 81 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~-~~p~ 81 (364)
-||.|.|+|..|+.+++.|..++.+|.. .|. +......++. . .|- .++.. .+++
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~-~D~--~~~~~~~~l~---------------~-----~gi--~~~~~~~~~~ 70 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVV-ADD--NETARHKLIE---------------V-----TGV--ADISTAEASD 70 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEE-ECC--ChHHHHHHHH---------------h-----cCc--EEEeCCCchh
Confidence 4799999999999999999888776544 453 2222222211 0 011 12211 1233
Q ss_pred CCCCcCCCccEEEeecCCCCCHhhHHHHHhCCC
Q psy8544 82 EIPWSQTGAEYIVESTGVFKTKDTASAHLKGGA 114 (364)
Q Consensus 82 ~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGa 114 (364)
+++ +.|+||-|.|.--+......+.+.|.
T Consensus 71 ~~~----~~d~vV~Spgi~~~~p~~~~a~~~gi 99 (473)
T PRK00141 71 QLD----SFSLVVTSPGWRPDSPLLVDAQSQGL 99 (473)
T ss_pred Hhc----CCCEEEeCCCCCCCCHHHHHHHHCCC
Confidence 332 57899999888766655666666666
No 274
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=72.70 E-value=4.8 Score=38.80 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=26.3
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEe
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
.||||+|.|.+|..+++.+...+++|+..+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d 34 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLD 34 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEe
Confidence 379999999999999999988888887664
No 275
>PLN02778 3,5-epimerase/4-reductase
Probab=72.67 E-value=8.8 Score=37.07 Aligned_cols=30 Identities=23% Similarity=0.186 Sum_probs=26.0
Q ss_pred CCceEEEEc-cChHHHHHHHHHhcCCCcEEE
Q psy8544 1 MAYKIGING-FGRIGRLVLREALHRNTPVVG 30 (364)
Q Consensus 1 m~irVaInG-~G~IGr~vlr~l~~~~~~iva 30 (364)
|++||-|.| .|.||+.+++.|.+++.+++.
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~ 38 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHY 38 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCEEEE
Confidence 357999999 899999999999988777754
No 276
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=72.53 E-value=22 Score=35.09 Aligned_cols=29 Identities=24% Similarity=0.570 Sum_probs=23.9
Q ss_pred eEEEEccChHHHHHHHHHhcCCC-cEEEEe
Q psy8544 4 KIGINGFGRIGRLVLREALHRNT-PVVGIN 32 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~-~ivaIn 32 (364)
+|.|+|.|.||...++++...+. .++++.
T Consensus 189 ~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~ 218 (368)
T cd08300 189 TVAVFGLGAVGLAVIQGAKAAGASRIIGID 218 (368)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 68999999999999998877777 466664
No 277
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=72.48 E-value=4.9 Score=39.10 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=25.0
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEe
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
||||+|.|++|..+.+.|.+.++++...+
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~ 30 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTT 30 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEe
Confidence 89999999999999999988877776443
No 278
>PLN02494 adenosylhomocysteinase
Probab=72.33 E-value=4.7 Score=42.23 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=25.8
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEe
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
-+|+|.|+|.||+.+++.+...+..|++++
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e 284 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTE 284 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 379999999999999999987788877664
No 279
>PRK10083 putative oxidoreductase; Provisional
Probab=72.25 E-value=19 Score=34.60 Aligned_cols=95 Identities=19% Similarity=0.139 Sum_probs=50.7
Q ss_pred eEEEEccChHHHHHHHHHhc-CCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALH-RNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~-~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
+|.|+|.|.+|+.+++++.. .+..++.+-+. +.+.+..+.++ |. . ..++-+.-.+. +....
T Consensus 163 ~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~----Ga-~---------~~i~~~~~~~~--~~~~~ 224 (339)
T PRK10083 163 VALIYGAGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKES----GA-D---------WVINNAQEPLG--EALEE 224 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHh----CC-c---------EEecCccccHH--HHHhc
Confidence 68999999999999888875 47764444443 45554333322 11 0 11111100000 00111
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEE
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVII 119 (364)
.. .++|+||+|+|.-.+...+-.+++.|.+-+.+
T Consensus 225 ~g---~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 225 KG---IKPTLIIDAACHPSILEEAVTLASPAARIVLM 258 (339)
T ss_pred CC---CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 11 24679999998543445555677666644444
No 280
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=72.24 E-value=4.1 Score=39.26 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=27.8
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
|||-|.| .|.+|+.+.+.|.++++++++++.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r 32 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSR 32 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEEST
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCc
Confidence 5999999 899999999999888889988853
No 281
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=72.20 E-value=36 Score=31.97 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=25.1
Q ss_pred eEEEEccChHHHHHHHHHhcCCCc-EEEEeC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTP-VVGIND 33 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~-ivaInd 33 (364)
+|.|+|.|.+|+.+++++...+++ ++++..
T Consensus 132 ~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~ 162 (312)
T cd08269 132 TVAVIGAGFIGLLFLQLAAAAGARRVIAIDR 162 (312)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEECC
Confidence 688999999999999988877888 766654
No 282
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=72.13 E-value=5.5 Score=38.29 Aligned_cols=31 Identities=19% Similarity=0.448 Sum_probs=25.8
Q ss_pred ceEEEEccChHHHHHHHHHhcCC----CcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRN----TPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~----~~ivaInd 33 (364)
+||+|+|+|.+|+.+++.|.+.+ .+|+.++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 59999999999999999988764 46776664
No 283
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=72.12 E-value=30 Score=32.14 Aligned_cols=30 Identities=27% Similarity=0.515 Sum_probs=24.8
Q ss_pred eEEEEccChHHHHHHHHHhcCCCc-EEEEeC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTP-VVGIND 33 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~-ivaInd 33 (364)
+|.|+|.|.+|+.+++++...+.. ++++..
T Consensus 100 ~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~ 130 (277)
T cd08255 100 RVAVVGLGLVGLLAAQLAKAAGAREVVGVDP 130 (277)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCcEEEECC
Confidence 688999999999999988877777 777643
No 284
>PRK06988 putative formyltransferase; Provisional
Probab=72.08 E-value=5.5 Score=39.27 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=28.1
Q ss_pred CCceEEEEccChHHHHHHHHHhcCCCcEEEEe
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
|++||.+.|++.+|...++.|.+++++|++|-
T Consensus 1 ~~mkIvf~Gs~~~a~~~L~~L~~~~~~i~~Vv 32 (312)
T PRK06988 1 MKPRAVVFAYHNVGVRCLQVLLARGVDVALVV 32 (312)
T ss_pred CCcEEEEEeCcHHHHHHHHHHHhCCCCEEEEE
Confidence 66899999999999999999988878887663
No 285
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=71.79 E-value=22 Score=35.09 Aligned_cols=29 Identities=17% Similarity=0.459 Sum_probs=23.9
Q ss_pred eEEEEccChHHHHHHHHHhcCCC-cEEEEe
Q psy8544 4 KIGINGFGRIGRLVLREALHRNT-PVVGIN 32 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~-~ivaIn 32 (364)
+|.|.|.|.+|..+++++...+. .|+++.
T Consensus 187 ~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~ 216 (365)
T cd08277 187 TVAVFGLGAVGLSAIMGAKIAGASRIIGVD 216 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 68999999999999998877777 466664
No 286
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=71.62 E-value=14 Score=35.87 Aligned_cols=28 Identities=32% Similarity=0.413 Sum_probs=23.2
Q ss_pred eEEEEccChHHHHHHHHHhcCCCc-EEEE
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTP-VVGI 31 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~-ivaI 31 (364)
+|.|.|.|.+|+..++++...+.. |+++
T Consensus 163 ~vlV~G~g~vG~~~~~~a~~~G~~~v~~~ 191 (347)
T PRK10309 163 NVIIIGAGTIGLLAIQCAVALGAKSVTAI 191 (347)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 789999999999999888777777 4444
No 287
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.47 E-value=17 Score=35.84 Aligned_cols=31 Identities=13% Similarity=0.138 Sum_probs=24.7
Q ss_pred ceEEEEcc-ChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGF-GRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~-G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.+|+|+|. |.+|+-+.+.|.+++..+...|.
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~ 191 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHS 191 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECC
Confidence 37999996 59999999999887777755543
No 288
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=71.23 E-value=10 Score=37.55 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=28.6
Q ss_pred eEEEEccChHHHHHHHHHhcCCC-cEEEEeCCCCCHHHHHHHh
Q psy8544 4 KIGINGFGRIGRLVLREALHRNT-PVVGINDPHLSVDYLAYML 45 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~-~ivaInd~~~~~~~~a~ll 45 (364)
+|.|.|.|.||...++++...+. .|+++.. +.+.+..+.
T Consensus 188 ~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~---~~~~~~~a~ 227 (368)
T TIGR02818 188 TVAVFGLGGIGLSVIQGARMAKASRIIAIDI---NPAKFELAK 227 (368)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHH
Confidence 68999999999999998877777 5776643 345444444
No 289
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=70.94 E-value=37 Score=37.34 Aligned_cols=152 Identities=15% Similarity=0.116 Sum_probs=78.9
Q ss_pred eEEEEccChHHHHHHHHHh-cCCCcEEEEeCCCCCHHHHHHHhhc-----cc--ccccCCcceeecCCeEEECCEEEEEE
Q psy8544 4 KIGINGFGRIGRLVLREAL-HRNTPVVGINDPHLSVDYLAYMLKY-----DS--THGRFKGDVKTEGNNIVVNGKKIAVF 75 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~-~~~~~ivaInd~~~~~~~~a~ll~y-----dS--~~g~~~~~v~~~~~~l~i~gk~I~v~ 75 (364)
||+|+|.|.+|+.+...+. ..+++|+-+ |. +++.+....++ +. ..|++..... ...+ ..|++.
T Consensus 311 ~v~ViGaG~mG~giA~~~a~~~G~~V~l~-d~--~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~----~~i~~~ 381 (708)
T PRK11154 311 KVGVLGGGLMGGGIAYVTATKAGLPVRIK-DI--NPQGINHALKYSWDLLDKKVKRRHLKPSER--DKQM----ALISGT 381 (708)
T ss_pred EEEEECCchhhHHHHHHHHHHcCCeEEEE-eC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHH--HHHH----hcEEEe
Confidence 7999999999999999877 448887654 43 45544333221 10 1122211100 0000 123332
Q ss_pred ecCCCCCCCCcCCCccEEEeecCCCCCHh-----hHHHHHhCCCCEEEEeCCCC----------CCCeEEc---ccCccc
Q psy8544 76 QKMKPEEIPWSQTGAEYIVESTGVFKTKD-----TASAHLKGGAKKVIITAPSK----------DAPMFVC---GVNLDK 137 (364)
Q Consensus 76 ~~~~p~~~~w~~~gvDiV~estG~f~s~e-----~a~~hl~aGakkVIIsaps~----------d~p~vV~---gVN~~~ 137 (364)
.+.+.+ .++|+|+||...-...+ ..+.++..++ ++-||.|. .-|-=+. =.|+-.
T Consensus 382 --~~~~~~----~~aDlViEav~E~~~~K~~v~~~le~~~~~~~--ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~ 453 (708)
T PRK11154 382 --TDYRGF----KHADVVIEAVFEDLALKQQMVAEVEQNCAPHT--IFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVE 453 (708)
T ss_pred --CChHHh----ccCCEEeecccccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHHhcCcccceEEEecCCccc
Confidence 223333 38999999975544321 2234444444 77788874 1221111 123222
Q ss_pred cCCCCCeEecCCchhhhHHhHHHHHhhhcCeeEEEE
Q psy8544 138 YDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLM 173 (364)
Q Consensus 138 ~~~~~~IISnaSCTTn~Lap~lk~L~d~fGI~~~~~ 173 (364)
+-+--.||..+.++-..+.-+...+. ..|..-+.+
T Consensus 454 ~~~lVEvv~g~~Ts~~~~~~~~~~~~-~~gk~pv~v 488 (708)
T PRK11154 454 KMPLVEVIPHAKTSAETIATTVALAK-KQGKTPIVV 488 (708)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHH-HcCCceEEE
Confidence 22223477777777666666666654 466654443
No 290
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=70.88 E-value=2.4 Score=39.62 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=23.7
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.||.|.|.|-+|..+++.|...++.-+.|-|
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD 52 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVD 52 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 5899999999999999999766553333333
No 291
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=70.87 E-value=3 Score=39.65 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=20.9
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT 26 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~ 26 (364)
-||.|+|.|-+|..+++.|...++
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gv 56 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGV 56 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCC
Confidence 589999999999999999976544
No 292
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=70.71 E-value=5.1 Score=40.06 Aligned_cols=31 Identities=23% Similarity=0.172 Sum_probs=26.4
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.+|||+|+|.+|+.+++.|.+.+++|+..+.
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r 48 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLR 48 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEEC
Confidence 5899999999999999999888888765443
No 293
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=70.70 E-value=6 Score=38.57 Aligned_cols=32 Identities=25% Similarity=0.176 Sum_probs=25.5
Q ss_pred CceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 2 AYKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.+||+|+|.|.||..+...|.+.+.++..+..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r 36 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLR 36 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEe
Confidence 47999999999999999988876556554443
No 294
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=70.52 E-value=5.7 Score=38.71 Aligned_cols=31 Identities=23% Similarity=0.097 Sum_probs=26.9
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
++|+|+|.|.+|..+...|..++.+|+..+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~ 33 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDA 33 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeC
Confidence 4899999999999999999888888776654
No 295
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=70.46 E-value=5.9 Score=38.19 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=28.4
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHH
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYL 41 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~ 41 (364)
||+|+|.|.+|+.++..+..++++|+.++. +++.+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~---~~~~l 39 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDV---SEEIL 39 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeC---CHHHH
Confidence 699999999999999999888888776643 45544
No 296
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=70.44 E-value=8 Score=38.24 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=26.0
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.||||+|+|.+|+.+++.|.+++++++...+
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~ 34 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLR 34 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEEC
Confidence 4899999999999999999888777654444
No 297
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=70.11 E-value=40 Score=32.42 Aligned_cols=40 Identities=25% Similarity=0.176 Sum_probs=28.3
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHh
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYML 45 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll 45 (364)
+|.|+|.|.+|+.+++++...+..++.+.+. +.+...++-
T Consensus 164 ~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~ 203 (341)
T cd08262 164 VALVIGCGPIGLAVIAALKARGVGPIVASDF--SPERRALAL 203 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHH
Confidence 6889999999999988887777775544443 355544443
No 298
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=69.94 E-value=5.6 Score=40.86 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=25.3
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEe
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
+|+|.|+|.||+.+++.+...+.+|+++.
T Consensus 197 ~VvViG~G~IG~~vA~~ak~~Ga~ViV~d 225 (406)
T TIGR00936 197 TVVVAGYGWCGKGIAMRARGMGARVIVTE 225 (406)
T ss_pred EEEEECCCHHHHHHHHHHhhCcCEEEEEe
Confidence 79999999999999999887788876653
No 299
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=69.93 E-value=5.7 Score=36.72 Aligned_cols=31 Identities=35% Similarity=0.430 Sum_probs=27.9
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
++|.|.| +|.||+.+++.|.+++-+|+++..
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r 32 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVR 32 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEe
Confidence 4899999 999999999999999888888875
No 300
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=69.84 E-value=42 Score=32.24 Aligned_cols=94 Identities=17% Similarity=0.190 Sum_probs=50.5
Q ss_pred eEEEEccChHHHHHHHHHhcCCCc-EEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTP-VVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~-ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
+|.|+|-|.+|+.+++++...+.. ++++.. +.+...++.+|.. +. .++.+.-...+ .--..
T Consensus 168 ~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~---s~~~~~~~~~~g~-------------~~-~~~~~~~~~~~-~i~~~ 229 (343)
T cd08235 168 TVLVIGAGPIGLLHAMLAKASGARKVIVSDL---NEFRLEFAKKLGA-------------DY-TIDAAEEDLVE-KVREL 229 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEECC---CHHHHHHHHHhCC-------------cE-EecCCccCHHH-HHHHH
Confidence 688999999999999987777777 655533 3444444433321 01 11111000000 00000
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEE
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKV 117 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkV 117 (364)
.+ ..++|+||+|+|.....+.+..+++.+.+-+
T Consensus 230 ~~--~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v 262 (343)
T cd08235 230 TD--GRGADVVIVATGSPEAQAQALELVRKGGRIL 262 (343)
T ss_pred hC--CcCCCEEEECCCChHHHHHHHHHhhcCCEEE
Confidence 11 1369999999885433444556676665433
No 301
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=69.82 E-value=7.3 Score=37.59 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=29.4
Q ss_pred eEEEEccChHHHHHHHHHhcCCC-cEEEEeCCCCCHHHHHHHhh
Q psy8544 4 KIGINGFGRIGRLVLREALHRNT-PVVGINDPHLSVDYLAYMLK 46 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~-~ivaInd~~~~~~~~a~ll~ 46 (364)
+|.|+|.|.+|+.+++++..+++ .++++ +. +.+....+.+
T Consensus 170 ~vlI~g~g~vg~~~~~~a~~~g~~~v~~~-~~--~~~~~~~~~~ 210 (344)
T cd08284 170 TVAVIGCGPVGLCAVLSAQVLGAARVFAV-DP--VPERLERAAA 210 (344)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCceEEEE-cC--CHHHHHHHHH
Confidence 68999999999999999888887 67777 32 3444444433
No 302
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.79 E-value=30 Score=35.61 Aligned_cols=88 Identities=13% Similarity=0.132 Sum_probs=51.6
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHH---HHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecC-
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVD---YLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKM- 78 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~---~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~- 78 (364)
-||+|.|+|+.|+.+++.|.+++.+|.+ .|...... ....|- . .| +.++...
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~-~D~~~~~~~~~~~~~l~----------------~-----~g--i~~~~~~~ 70 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTA-FDKKSEEELGEVSNELK----------------E-----LG--VKLVLGEN 70 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEE-ECCCCCccchHHHHHHH----------------h-----CC--CEEEeCCC
Confidence 3899999999999999999988777544 45311101 001111 0 11 1111111
Q ss_pred CCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEe
Q psy8544 79 KPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIIT 120 (364)
Q Consensus 79 ~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIs 120 (364)
.++.+. +.|+||-+.|.-.+.+....+.+.|. -|+|
T Consensus 71 ~~~~~~----~~dlVV~Spgi~~~~p~~~~a~~~~i--~i~s 106 (458)
T PRK01710 71 YLDKLD----GFDVIFKTPSMRIDSPELVKAKEEGA--YITS 106 (458)
T ss_pred ChHHhc----cCCEEEECCCCCCCchHHHHHHHcCC--cEEe
Confidence 123332 57899988888777666666667776 4554
No 303
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=69.24 E-value=27 Score=33.39 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=24.9
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
+|.|.|.|.+|+.+++++...+++++.+..
T Consensus 165 ~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~ 194 (330)
T cd08245 165 RVAVLGIGGLGHLAVQYARAMGFETVAITR 194 (330)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 688999888999998888877888777654
No 304
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=69.23 E-value=8.9 Score=38.88 Aligned_cols=42 Identities=29% Similarity=0.315 Sum_probs=34.1
Q ss_pred ceEEEEc-cChHHHHHHHHHhcC--CCcEEEEeCCCCCHHHHHHHh
Q psy8544 3 YKIGING-FGRIGRLVLREALHR--NTPVVGINDPHLSVDYLAYML 45 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~--~~~ivaInd~~~~~~~~a~ll 45 (364)
.|+.|.| ||-||.+.|.++.++ .|+|+++..- -..+.++...
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag-~n~~~l~~q~ 46 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAG-KNVELLAEQI 46 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecC-CcHHHHHHHH
Confidence 5899999 999999999999877 7999999764 3666655444
No 305
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=69.04 E-value=36 Score=33.20 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=24.9
Q ss_pred eEEEEccChHHHHHHHHHhcCCC-cEEEEeC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNT-PVVGIND 33 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~-~ivaInd 33 (364)
+|.|.|.|.+|+.+++++...+. .++++..
T Consensus 180 ~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~ 210 (361)
T cd08231 180 TVVVQGAGPLGLYAVAAAKLAGARRVIVIDG 210 (361)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 68899999999999998877788 7776643
No 306
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=69.00 E-value=20 Score=37.97 Aligned_cols=38 Identities=18% Similarity=0.108 Sum_probs=27.6
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHH
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAY 43 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ 43 (364)
-||.|.|.|++|+..++.+...+-.++++ |. +++.+..
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~-d~--~~~rle~ 202 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAF-DT--RPEVKEQ 202 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE-eC--CHHHHHH
Confidence 48999999999999999888776555444 43 4554433
No 307
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.91 E-value=19 Score=36.54 Aligned_cols=89 Identities=21% Similarity=0.209 Sum_probs=51.3
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCH--HHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSV--DYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPE 81 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~--~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~ 81 (364)
+|.|.|.|++|+.+++.|.+++..|+.. |..... .....|-. .+-. ++...++.
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~-d~~~~~~~~~~~~l~~--------------~g~~---------~~~~~~~~ 62 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVN-DGKPFSENPEAQELLE--------------EGIK---------VICGSHPL 62 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEE-cCCCccchhHHHHHHh--------------cCCE---------EEeCCCCH
Confidence 6899999999999999999888776544 431111 11111110 0111 11112222
Q ss_pred CCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEe
Q psy8544 82 EIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIIT 120 (364)
Q Consensus 82 ~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIs 120 (364)
++. ..+.|+||-+.|...+......+.+.|. .|++
T Consensus 63 ~~~--~~~~d~vV~s~gi~~~~~~~~~a~~~~i--~v~~ 97 (447)
T PRK02472 63 ELL--DEDFDLMVKNPGIPYTNPMVEKALEKGI--PIIT 97 (447)
T ss_pred HHh--cCcCCEEEECCCCCCCCHHHHHHHHCCC--cEEe
Confidence 211 1147999999988777666666667776 4454
No 308
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=68.73 E-value=25 Score=34.17 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=24.1
Q ss_pred eEEEEccChHHHHHHHHHhcCCC-cEEEEe
Q psy8544 4 KIGINGFGRIGRLVLREALHRNT-PVVGIN 32 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~-~ivaIn 32 (364)
+|.|+|.|.+|+..++++...+. .|+++.
T Consensus 175 ~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~ 204 (351)
T cd08233 175 TALVLGAGPIGLLTILALKAAGASKIIVSE 204 (351)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence 68999999999999998887788 565553
No 309
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=68.48 E-value=23 Score=39.39 Aligned_cols=82 Identities=20% Similarity=0.163 Sum_probs=48.6
Q ss_pred eEEEEccChHHHHH-HHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 4 KIGINGFGRIGRLV-LREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 4 rVaInG~G~IGr~v-lr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
+|.|.|.|..|+.. +|.|.+++.+|. +.|....+ .+..|-+. | |.++...+++.
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G~~V~-~sD~~~~~-~~~~L~~~---------------------g--i~~~~g~~~~~ 60 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRGYSVS-GSDLSEGK-TVEKLKAK---------------------G--ARFFLGHQEEH 60 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCCCeEE-EECCCCCh-HHHHHHHC---------------------C--CEEeCCCCHHH
Confidence 59999999999997 889888888864 46642122 22232210 1 11111122333
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCC
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGA 114 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGa 114 (364)
++ +.|+|+-|.|.-.+.+....+.+.|.
T Consensus 61 ~~----~~d~vV~SpgI~~~~p~~~~a~~~gi 88 (809)
T PRK14573 61 VP----EDAVVVYSSSISKDNVEYLSAKSRGN 88 (809)
T ss_pred cC----CCCEEEECCCcCCCCHHHHHHHHCCC
Confidence 32 57899988888766554555555554
No 310
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=68.47 E-value=2.9 Score=39.63 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=20.9
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT 26 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~ 26 (364)
.||.|.|.|-+|..+++.|...++
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gv 48 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGV 48 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCC
Confidence 489999999999999999986544
No 311
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.32 E-value=26 Score=36.42 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=25.5
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDP 34 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~ 34 (364)
||.|.|.|..|+.++|.|..++.+|.+ .|.
T Consensus 9 ~i~v~G~G~sG~s~a~~L~~~G~~v~~-~D~ 38 (498)
T PRK02006 9 MVLVLGLGESGLAMARWCARHGARLRV-ADT 38 (498)
T ss_pred EEEEEeecHhHHHHHHHHHHCCCEEEE-EcC
Confidence 799999999999999999988888654 453
No 312
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=68.20 E-value=15 Score=36.33 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.1
Q ss_pred CceEEEEcc-ChHHHHHHHHHhcC
Q psy8544 2 AYKIGINGF-GRIGRLVLREALHR 24 (364)
Q Consensus 2 ~irVaInG~-G~IGr~vlr~l~~~ 24 (364)
+.||+|.|. |.||..++-.|..+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~ 25 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASG 25 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 579999996 99999998888765
No 313
>KOG0024|consensus
Probab=68.19 E-value=11 Score=37.76 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=21.8
Q ss_pred CCccEEEeecCCCCCHhhHHHHHhCCC
Q psy8544 88 TGAEYIVESTGVFKTKDTASAHLKGGA 114 (364)
Q Consensus 88 ~gvDiV~estG~f~s~e~a~~hl~aGa 114 (364)
...|++|||+|...+.+.+-.+++.|=
T Consensus 241 ~~~d~~~dCsG~~~~~~aai~a~r~gG 267 (354)
T KOG0024|consen 241 KQPDVTFDCSGAEVTIRAAIKATRSGG 267 (354)
T ss_pred cCCCeEEEccCchHHHHHHHHHhccCC
Confidence 348999999999999887777776554
No 314
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=68.17 E-value=45 Score=31.69 Aligned_cols=95 Identities=17% Similarity=0.210 Sum_probs=52.6
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEEI 83 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~~ 83 (364)
+|-|+|.|.+|+.+++++...+..++++.. +.+...++-++. . +. .++.+.-. ..+. ....
T Consensus 168 ~vli~g~g~vG~~~~~la~~~G~~V~~~~~---s~~~~~~~~~~g----~---------~~-~~~~~~~~-~~~~-~~~~ 228 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAMGAAVIAVDI---KEEKLELAKELG----A---------DE-VLNSLDDS-PKDK-KAAG 228 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhC----C---------CE-EEcCCCcC-HHHH-HHHh
Confidence 688889999999999988877888776643 344443332221 0 00 11110000 0000 0001
Q ss_pred CCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEE
Q psy8544 84 PWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119 (364)
Q Consensus 84 ~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVII 119 (364)
. ..++|+|++|.|.-...+.+..+++.|.+-+.+
T Consensus 229 ~--~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 229 L--GGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred c--CCCceEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 1 237999999998644555566778777644333
No 315
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=68.03 E-value=33 Score=33.78 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=24.2
Q ss_pred eEEEEcc-ChHHHHHHHHHhcCCCcEEEEe
Q psy8544 4 KIGINGF-GRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 4 rVaInG~-G~IGr~vlr~l~~~~~~ivaIn 32 (364)
+|.|+|. |.||+..++++..++.+++++.
T Consensus 161 ~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~ 190 (348)
T PLN03154 161 SVFVSAASGAVGQLVGQLAKLHGCYVVGSA 190 (348)
T ss_pred EEEEecCccHHHHHHHHHHHHcCCEEEEEc
Confidence 6899995 9999999998877788877664
No 316
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=67.96 E-value=21 Score=39.25 Aligned_cols=151 Identities=14% Similarity=0.092 Sum_probs=75.7
Q ss_pred eEEEEccChHHHHHHHHHhc-CCCcEEEEeCCCCCHHHHHHHhhccc-------ccccCCcceeecCCeEEECCEEEEEE
Q psy8544 4 KIGINGFGRIGRLVLREALH-RNTPVVGINDPHLSVDYLAYMLKYDS-------THGRFKGDVKTEGNNIVVNGKKIAVF 75 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~-~~~~ivaInd~~~~~~~~a~ll~ydS-------~~g~~~~~v~~~~~~l~i~gk~I~v~ 75 (364)
||+|+|.|.+|+.++..+.. .+++|+- -|. +++.+....++-. ..|++.... .+..+ ..|+..
T Consensus 306 ~v~ViGaG~mG~~iA~~~a~~~G~~V~l-~d~--~~~~l~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~----~~i~~~ 376 (699)
T TIGR02440 306 KVGILGGGLMGGGIASVTATKAGIPVRI-KDI--NPQGINNALKYAWKLLDKGVKRRHMTPAE--RDNQM----ALITGT 376 (699)
T ss_pred EEEEECCcHHHHHHHHHHHHHcCCeEEE-EeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHH--HHHHH----cCeEEe
Confidence 79999999999999987763 5888654 454 5554443332100 011111100 00000 123332
Q ss_pred ecCCCCCCCCcCCCccEEEeecCCCCCHh-----hHHHHHhCCCCEEEEeCCCC----------CCCe--EE-cccCccc
Q psy8544 76 QKMKPEEIPWSQTGAEYIVESTGVFKTKD-----TASAHLKGGAKKVIITAPSK----------DAPM--FV-CGVNLDK 137 (364)
Q Consensus 76 ~~~~p~~~~w~~~gvDiV~estG~f~s~e-----~a~~hl~aGakkVIIsaps~----------d~p~--vV-~gVN~~~ 137 (364)
.+.+.+ .++|+|+||.......+ ..+.++...+ ++-||.|. ..|- +. -=.|+-.
T Consensus 377 --~~~~~~----~~adlViEav~E~l~~K~~v~~~l~~~~~~~~--ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~ 448 (699)
T TIGR02440 377 --TDYRGF----KDVDIVIEAVFEDLALKHQMVKDIEQECAAHT--IFASNTSSLPIGQIAAAASRPENVIGLHYFSPVE 448 (699)
T ss_pred --CChHHh----ccCCEEEEeccccHHHHHHHHHHHHhhCCCCc--EEEeCCCCCCHHHHHHhcCCcccEEEEecCCccc
Confidence 233333 38999999975544322 1223333334 77788774 1231 11 1223322
Q ss_pred cCCCCCeEecCCchhhhHHhHHHHHhhhcCeeEEE
Q psy8544 138 YDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGL 172 (364)
Q Consensus 138 ~~~~~~IISnaSCTTn~Lap~lk~L~d~fGI~~~~ 172 (364)
+-+--.||..+.++-..+.-+...+. ..|-.-+.
T Consensus 449 ~~~lVEvv~g~~T~~~~~~~~~~~~~-~~gk~pv~ 482 (699)
T TIGR02440 449 KMPLVEVIPHAGTSEQTIATTVALAK-KQGKTPIV 482 (699)
T ss_pred cCceEEEeCCCCCCHHHHHHHHHHHH-HcCCeEEE
Confidence 22222477777766656665555444 46654443
No 317
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=67.72 E-value=47 Score=32.56 Aligned_cols=30 Identities=13% Similarity=0.358 Sum_probs=24.6
Q ss_pred eEEEEccChHHHHHHHHHhcCCCc-EEEEeC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTP-VVGIND 33 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~-ivaInd 33 (364)
+|.|+|.|.+|+.+++++...++. ++.+..
T Consensus 190 ~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~ 220 (367)
T cd08263 190 TVAVIGVGGVGSSAIQLAKAFGASPIIAVDV 220 (367)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCeEEEEeC
Confidence 688999999999999998777777 666643
No 318
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.42 E-value=37 Score=34.53 Aligned_cols=87 Identities=22% Similarity=0.206 Sum_probs=52.8
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEe-cCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQ-KMKPEE 82 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~-~~~p~~ 82 (364)
+|.|.|.|..|+..++.|..++.+|.+ .|....+....+ +. .|- .++. ..++..
T Consensus 8 ~i~v~G~G~sG~s~~~~l~~~G~~v~~-~D~~~~~~~~~~---------------------l~-~g~--~~~~~~~~~~~ 62 (438)
T PRK03806 8 KVVIIGLGLTGLSCVDFFLARGVTPRV-IDTRITPPGLDK---------------------LP-ENV--ERHTGSLNDEW 62 (438)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCeEEE-EcCCCCchhHHH---------------------Hh-cCC--EEEeCCCCHHH
Confidence 799999999999999988877777655 443111110001 10 011 1211 122222
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeC
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITA 121 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsa 121 (364)
+. +.|+||-+.|.-.+.+....+.+.|+ .|++-
T Consensus 63 ~~----~~d~vv~spgi~~~~~~~~~a~~~g~--~v~~~ 95 (438)
T PRK03806 63 LL----AADLIVASPGIALAHPSLSAAADAGI--EIVGD 95 (438)
T ss_pred hc----CCCEEEECCCCCCCCHHHHHHHHCCC--eEEEH
Confidence 22 46899999888777777777888888 35653
No 319
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=67.22 E-value=15 Score=36.15 Aligned_cols=93 Identities=20% Similarity=0.267 Sum_probs=50.1
Q ss_pred eEEEEccChHHHHHHHHHhcCCCc-EEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTP-VVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~-ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
+|.|+|.|.+|..+++++...+.+ ++++.. +.+....+-++ |. ...++.+.-.+. .....
T Consensus 189 ~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~---~~~k~~~~~~~----g~----------~~~i~~~~~~~~--~~v~~ 249 (365)
T cd08278 189 SIAVFGAGAVGLAAVMAAKIAGCTTIIAVDI---VDSRLELAKEL----GA----------THVINPKEEDLV--AAIRE 249 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHHHHc----CC----------cEEecCCCcCHH--HHHHH
Confidence 689999999999998888777775 555533 23333222211 11 011111100000 00011
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEE
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKV 117 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkV 117 (364)
.. ..++|+|++|+|.-...+.+..+++.+.+-+
T Consensus 250 ~~--~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v 282 (365)
T cd08278 250 IT--GGGVDYALDTTGVPAVIEQAVDALAPRGTLA 282 (365)
T ss_pred Hh--CCCCcEEEECCCCcHHHHHHHHHhccCCEEE
Confidence 11 2379999999986444455666776666333
No 320
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=67.18 E-value=16 Score=35.79 Aligned_cols=88 Identities=22% Similarity=0.215 Sum_probs=56.6
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEE-EEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCC
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVV-GINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKP 80 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~iv-aInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p 80 (364)
-||-|.| +|.+|+.+++.|.+.+++.+ .||--. -|+. +.|. +.+ ++.
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~----------~~~~-----------------v~G~--~~y--~sv 57 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGK----------GGTT-----------------VLGL--PVF--NTV 57 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCC----------CCCe-----------------EeCe--ecc--CCH
Confidence 4899999 99999999999987655433 555310 0111 1221 122 334
Q ss_pred CCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEE-eCC
Q psy8544 81 EEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII-TAP 122 (364)
Q Consensus 81 ~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVII-sap 122 (364)
++++=.. ++|+++-+++.....+..+...++|+|.+|| |+.
T Consensus 58 ~dlp~~~-~~DlAvi~vp~~~v~~~l~e~~~~gvk~avI~s~G 99 (291)
T PRK05678 58 AEAVEAT-GANASVIYVPPPFAADAILEAIDAGIDLIVCITEG 99 (291)
T ss_pred HHHhhcc-CCCEEEEEcCHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 4454100 2899999999887777788888899998555 443
No 321
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=67.12 E-value=7.7 Score=37.59 Aligned_cols=39 Identities=21% Similarity=0.154 Sum_probs=29.8
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHH
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYM 44 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~l 44 (364)
.||+|+|.|.+|..+...|...+++|+.++. +.+.+..+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~---~~~~~~~~ 43 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDV---MEGALERA 43 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEEC---CHHHHHHH
Confidence 4899999999999999999877888776643 44444333
No 322
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=67.12 E-value=20 Score=37.05 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=25.5
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC-cEEEEeCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT-PVVGINDP 34 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~-~ivaInd~ 34 (364)
-||-|+|.|-+|+++++.|.++++ .|.-.|..
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT 211 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRT 211 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 369999999999999999999865 44444553
No 323
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=66.65 E-value=41 Score=32.39 Aligned_cols=97 Identities=16% Similarity=0.260 Sum_probs=51.0
Q ss_pred eEEEEccChHHHHHHHHHhcCCCc-EEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTP-VVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~-ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
+|.|.|-|.+|+.+++++..++.. ++++.. +.+....+-++ |- .-.++.+..... +....
T Consensus 171 ~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~---~~~~~~~~~~~----ga----------~~v~~~~~~~~~--~~i~~ 231 (345)
T cd08287 171 TVVVVGDGAVGLCAVLAAKRLGAERIIAMSR---HEDRQALAREF----GA----------TDIVAERGEEAV--ARVRE 231 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEECC---CHHHHHHHHHc----CC----------ceEecCCcccHH--HHHHH
Confidence 688889999999999888777876 555543 23322111111 10 011111110000 00001
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEe
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIIT 120 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIs 120 (364)
+. ...++|++++|+|.-...+.+..+++.+..-+.++
T Consensus 232 ~~-~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 232 LT-GGVGADAVLECVGTQESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred hc-CCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEec
Confidence 11 11369999999986555566667776665333333
No 324
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=66.56 E-value=21 Score=34.91 Aligned_cols=88 Identities=23% Similarity=0.231 Sum_probs=56.1
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEE-EEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCC
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVV-GINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKP 80 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~iv-aInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p 80 (364)
-||-|.| +|++|+.+++-+...++++| .||- +++..+ +.|. +.+ +..
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p------------------~~~~~~---------v~G~--~~y--~sv 55 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTP------------------GKGGTT---------VLGL--PVF--DSV 55 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCCCCEEEEECC------------------CCCcce---------ecCe--ecc--CCH
Confidence 4899999 89999999988876655544 3542 111111 1121 122 234
Q ss_pred CCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEE-eCC
Q psy8544 81 EEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII-TAP 122 (364)
Q Consensus 81 ~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVII-sap 122 (364)
++++..- ++|+++-+.+...-.+-.+...++|+|.+|| |+.
T Consensus 56 ~dlp~~~-~~Dlavi~vpa~~v~~~l~e~~~~Gvk~avIis~G 97 (286)
T TIGR01019 56 KEAVEET-GANASVIFVPAPFAADAIFEAIDAGIELIVCITEG 97 (286)
T ss_pred HHHhhcc-CCCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 4454211 3799999998877777778888899987655 443
No 325
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=66.52 E-value=36 Score=32.82 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=25.7
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
+|.|+|.|.+|+.+++++...++.++++..
T Consensus 168 ~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~ 197 (345)
T cd08260 168 WVAVHGCGGVGLSAVMIASALGARVIAVDI 197 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEeC
Confidence 689999999999999988877888877754
No 326
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=66.52 E-value=9.4 Score=33.80 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=26.7
Q ss_pred CceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 2 AYKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
+.||.|.|.|++|+..++++...+.+++.+..
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~ 51 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDE 51 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEES
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccC
Confidence 47999999999999999999888888887765
No 327
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=66.40 E-value=4.8 Score=38.15 Aligned_cols=115 Identities=18% Similarity=0.199 Sum_probs=55.1
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCC-CCCHHHHHHHhhcc-cccccCCcceeecCCeEEEC-CEEEEEEecC-C
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDP-HLSVDYLAYMLKYD-STHGRFKGDVKTEGNNIVVN-GKKIAVFQKM-K 79 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~-~~~~~~~a~ll~yd-S~~g~~~~~v~~~~~~l~i~-gk~I~v~~~~-~ 79 (364)
||.|+|.|-+|..+++.|...++.=..|-|. ..+...+-+-|-|. +.-|+.+..+-.+ .--.+| +-.|....++ +
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~-~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAE-AVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHH-HHHHHCCCCEEEEEeccCC
Confidence 6899999999999999997654322222221 12333333333333 2235554432111 000011 1111111111 0
Q ss_pred C-CCC--C-CcCCCccEEEeecCCCCCHhhHHH-HHhCCCCEEEEeCCC
Q psy8544 80 P-EEI--P-WSQTGAEYIVESTGVFKTKDTASA-HLKGGAKKVIITAPS 123 (364)
Q Consensus 80 p-~~~--~-w~~~gvDiV~estG~f~s~e~a~~-hl~aGakkVIIsaps 123 (364)
+ ..+ + | .+.|+|+.|+..+.++.+.-. ..+.+. .+|++.+
T Consensus 80 ~~~~~~~~f~--~~~DvVi~a~Dn~~aR~~ln~~c~~~~i--plI~~g~ 124 (234)
T cd01484 80 PEQDFNDTFF--EQFHIIVNALDNIIARRYVNGMLIFLIV--PLIESGT 124 (234)
T ss_pred hhhhchHHHH--hCCCEEEECCCCHHHHHHHHHHHHHcCC--CEEEEcc
Confidence 0 111 1 3 379999999998877655433 333443 4555443
No 328
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=66.39 E-value=49 Score=29.96 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=24.0
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
+|.|+|.|.+|+.+++++...+..++++..
T Consensus 137 ~vli~g~~~~G~~~~~~a~~~g~~v~~~~~ 166 (271)
T cd05188 137 TVLVLGAGGVGLLAAQLAKAAGARVIVTDR 166 (271)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEcC
Confidence 789999766999999988777777776643
No 329
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=66.35 E-value=37 Score=32.85 Aligned_cols=30 Identities=27% Similarity=0.311 Sum_probs=24.7
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
+|.|+| .|.+|+.+++++..++.+++++..
T Consensus 154 ~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~ 184 (338)
T cd08295 154 TVFVSAASGAVGQLVGQLAKLKGCYVVGSAG 184 (338)
T ss_pred EEEEecCccHHHHHHHHHHHHcCCEEEEEeC
Confidence 688999 699999999988877888766543
No 330
>PRK07680 late competence protein ComER; Validated
Probab=66.22 E-value=14 Score=35.27 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=20.5
Q ss_pred ceEEEEccChHHHHHHHHHhcCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRN 25 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~ 25 (364)
+||+|+|.|.+|+.+++.|.+.+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g 23 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESG 23 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCC
Confidence 38999999999999999988764
No 331
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=66.17 E-value=34 Score=32.35 Aligned_cols=88 Identities=13% Similarity=0.186 Sum_probs=49.2
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
+|.|+| .|.+|+.+++++...+.+++.... +.+...++.++.. + ..++.+... .....
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~-------------~-~~~~~~~~~----~~~~~ 207 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGA-------------S-EVLDREDLL----DESKK 207 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCC-------------c-EEEcchhHH----HHHHH
Confidence 689999 699999999988777777655543 3444444433211 0 111111100 00000
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCC
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGA 114 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGa 114 (364)
.+...++|+|++|+|.. ..+.+..++..+.
T Consensus 208 -~~~~~~~d~vi~~~~~~-~~~~~~~~l~~~g 237 (325)
T cd05280 208 -PLLKARWAGAIDTVGGD-VLANLLKQTKYGG 237 (325)
T ss_pred -HhcCCCccEEEECCchH-HHHHHHHhhcCCC
Confidence 01223689999999873 4555556665544
No 332
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=66.14 E-value=8.4 Score=36.89 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=24.8
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEe
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
|||+|.|.|.+|..+...|.+.+.+|..+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~ 30 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLV 30 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEe
Confidence 489999999999999999987766665554
No 333
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=66.06 E-value=34 Score=32.86 Aligned_cols=95 Identities=21% Similarity=0.286 Sum_probs=51.3
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
+|.|+| .|.||+.+++++...+..++++.. +.+.+..+.++ |- ...++.+.-....+ ....
T Consensus 141 ~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~l----Ga----------~~vi~~~~~~~~~~-~~~~ 202 (325)
T TIGR02825 141 TVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKL----GF----------DVAFNYKTVKSLEE-TLKK 202 (325)
T ss_pred EEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHc----CC----------CEEEeccccccHHH-HHHH
Confidence 688999 799999999988777778776644 34444333321 11 11121110000000 0001
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEE
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVII 119 (364)
.. ..++|+||||+|... .+.+-.+++.|.+-|.+
T Consensus 203 ~~--~~gvdvv~d~~G~~~-~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 203 AS--PDGYDCYFDNVGGEF-SNTVIGQMKKFGRIAIC 236 (325)
T ss_pred hC--CCCeEEEEECCCHHH-HHHHHHHhCcCcEEEEe
Confidence 11 137999999998643 34455566666644434
No 334
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=65.49 E-value=20 Score=34.09 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=21.2
Q ss_pred EEEEcc-ChHHHHHHHHHhcCC----CcEEEE
Q psy8544 5 IGINGF-GRIGRLVLREALHRN----TPVVGI 31 (364)
Q Consensus 5 VaInG~-G~IGr~vlr~l~~~~----~~ivaI 31 (364)
|+|.|. |.+|..++..|...+ .+|+-+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~ 32 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLY 32 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEE
Confidence 689998 999999999887665 465544
No 335
>PRK06545 prephenate dehydrogenase; Validated
Probab=64.90 E-value=8.2 Score=38.59 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=22.4
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEE
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVV 29 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~iv 29 (364)
||+|+|+|.||..+.+.|..+++++.
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v~ 27 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVF 27 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCeE
Confidence 79999999999999999987755544
No 336
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=64.69 E-value=6.5 Score=37.40 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=21.0
Q ss_pred ceEEEEccChHHHHHHHHHhcCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRN 25 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~ 25 (364)
+||+|+|+|.+|..+++.|.+.+
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~ 26 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSN 26 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCC
Confidence 79999999999999999998763
No 337
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=64.63 E-value=9.4 Score=35.50 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=26.8
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
++|.|.| +|.||+.+++.|.+++.+|+++..
T Consensus 18 ~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 18 KTVFVAGATGRTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred CeEEEECCCcHHHHHHHHHHHhCCCEEEEEec
Confidence 5899999 899999999999888778876653
No 338
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=64.62 E-value=14 Score=37.64 Aligned_cols=40 Identities=25% Similarity=0.201 Sum_probs=31.0
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhh
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLK 46 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ 46 (364)
|||+|.|.|.+|..+..++. .+++|++++- +.+.+..+.+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~---d~~kv~~l~~ 40 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVVALDI---LPSRVAMLND 40 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEEEEEC---CHHHHHHHHc
Confidence 38999999999999996665 4788887753 6777666654
No 339
>PLN02427 UDP-apiose/xylose synthase
Probab=64.53 E-value=8.9 Score=38.17 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=28.1
Q ss_pred CceEEEEc-cChHHHHHHHHHhcC-CCcEEEEeC
Q psy8544 2 AYKIGING-FGRIGRLVLREALHR-NTPVVGIND 33 (364)
Q Consensus 2 ~irVaInG-~G~IGr~vlr~l~~~-~~~ivaInd 33 (364)
++||.|.| +|.||+.+++.|.++ +.+|+++..
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 36899999 999999999999987 588988864
No 340
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=64.45 E-value=3 Score=42.16 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=53.5
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC-cEEEEeCCCCCHHHHHHHhhccc-ccccCCccee-----ecCCeEEECCEEEEEE
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT-PVVGINDPHLSVDYLAYMLKYDS-THGRFKGDVK-----TEGNNIVVNGKKIAVF 75 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~-~ivaInd~~~~~~~~a~ll~ydS-~~g~~~~~v~-----~~~~~l~i~gk~I~v~ 75 (364)
.||.|.|.|-+|..+++.|...++ +|.-+.+-..++..+..-+-|+. .-|+.+..+- .-+..+.+....-.+
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i- 120 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERL- 120 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeeec-
Confidence 589999999999999999986654 33333222223333333322321 1243322110 011222222111112
Q ss_pred ecCCCCCCCCcCCCccEEEeecCCCCCHhhHH-HHHhCCC
Q psy8544 76 QKMKPEEIPWSQTGAEYIVESTGVFKTKDTAS-AHLKGGA 114 (364)
Q Consensus 76 ~~~~p~~~~w~~~gvDiV~estG~f~s~e~a~-~hl~aGa 114 (364)
+++++.---.++|+|++|+..+.++...- ...+.|.
T Consensus 121 ---~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~i 157 (370)
T PRK05600 121 ---TAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGT 157 (370)
T ss_pred ---CHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 11121101137999999999988765433 2344554
No 341
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=64.37 E-value=7.1 Score=37.84 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.5
Q ss_pred ceEEEEccChHHHHHHHHHhcCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRN 25 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~ 25 (364)
.+|.|.|.|-+|..+++.|...+
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~G 53 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTG 53 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcC
Confidence 58999999999999999998654
No 342
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=64.13 E-value=51 Score=31.70 Aligned_cols=91 Identities=24% Similarity=0.296 Sum_probs=49.8
Q ss_pred eEEEEccChHHHHHHHHHhcCCCc-EEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTP-VVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~-ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
+|.|+|.|.+|+.+++++...+.. ++++... .+....+.++ |. .-.++.+... . +....
T Consensus 162 ~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~---~~~~~~l~~~----g~----------~~~~~~~~~~-~--~~~~~ 221 (343)
T cd08236 162 TVVVIGAGTIGLLAIQWLKILGAKRVIAVDID---DEKLAVAREL----GA----------DDTINPKEED-V--EKVRE 221 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC---HHHHHHHHHc----CC----------CEEecCcccc-H--HHHHH
Confidence 689999999999999988777777 7666542 3333333221 10 0111111000 0 00000
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCCC
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGAK 115 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGak 115 (364)
.. ...++|++|+|+|.....+.+..+++.+.+
T Consensus 222 ~~-~~~~~d~vld~~g~~~~~~~~~~~l~~~G~ 253 (343)
T cd08236 222 LT-EGRGADLVIEAAGSPATIEQALALARPGGK 253 (343)
T ss_pred Hh-CCCCCCEEEECCCCHHHHHHHHHHhhcCCE
Confidence 00 112589999998764445556667766553
No 343
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=64.04 E-value=6.5 Score=40.75 Aligned_cols=121 Identities=12% Similarity=0.188 Sum_probs=61.1
Q ss_pred eEEEEccChHHHHHHHHHhcCCC------cEEEEeCCCCCHHHHHHHhhccc-ccccCCcceee-----cCCeEEECCEE
Q psy8544 4 KIGINGFGRIGRLVLREALHRNT------PVVGINDPHLSVDYLAYMLKYDS-THGRFKGDVKT-----EGNNIVVNGKK 71 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~------~ivaInd~~~~~~~~a~ll~ydS-~~g~~~~~v~~-----~~~~l~i~gk~ 71 (364)
||.|+|.|.+|..+++.|...++ .|.-+.+-.++...+.+-|-|.. .-|+.++.+-. -+-.+.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~----- 75 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLK----- 75 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCE-----
Confidence 68999999999999999876666 44333322233333333222221 22544332211 111121
Q ss_pred EEEEecC-CCC---CC--C-CcCCCccEEEeecCCCCCHhhHHH-HHhCCCCEEEEeCCCC----CCCeEEccc
Q psy8544 72 IAVFQKM-KPE---EI--P-WSQTGAEYIVESTGVFKTKDTASA-HLKGGAKKVIITAPSK----DAPMFVCGV 133 (364)
Q Consensus 72 I~v~~~~-~p~---~~--~-w~~~gvDiV~estG~f~s~e~a~~-hl~aGakkVIIsaps~----d~p~vV~gV 133 (364)
|.....+ +++ .+ + |. +.|+|+.|.....++.+.-. ....+. .+|.+... .+-.++|++
T Consensus 76 I~a~~~~v~~~~~~~~~~~f~~--~~DvVi~alDn~~aR~~vn~~C~~~~i--Pli~~gt~G~~G~v~v~iP~~ 145 (435)
T cd01490 76 ITALQNRVGPETEHIFNDEFWE--KLDGVANALDNVDARMYVDRRCVYYRK--PLLESGTLGTKGNTQVVIPHL 145 (435)
T ss_pred EEEEecccChhhhhhhhHHHhc--CCCEEEECCCCHHHHHHHHHHHHHhCC--CEEEEecccceeEEEEEeCCC
Confidence 2222111 111 01 1 43 78999999988766654432 333444 44543322 355677765
No 344
>PRK08655 prephenate dehydrogenase; Provisional
Probab=63.44 E-value=9.2 Score=39.47 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=25.4
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEe
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
|||+|+| +|.+|+.+.+.|.+++.+|..++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~ 31 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTG 31 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEE
Confidence 4899998 99999999999988777776654
No 345
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=63.39 E-value=50 Score=32.04 Aligned_cols=28 Identities=18% Similarity=0.477 Sum_probs=22.7
Q ss_pred eEEEEccChHHHHHHHHHhcCCCc-EEEE
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTP-VVGI 31 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~-ivaI 31 (364)
+|.|+|.|.||+.+++++...+.. ++++
T Consensus 169 ~vlI~g~g~iG~~~~~lak~~G~~~v~~~ 197 (351)
T cd08285 169 TVAVFGIGPVGLMAVAGARLRGAGRIIAV 197 (351)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 688999999999999888766775 5544
No 346
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=63.06 E-value=19 Score=35.60 Aligned_cols=37 Identities=19% Similarity=0.115 Sum_probs=28.6
Q ss_pred ceEEEEccChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHH
Q psy8544 3 YKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYL 41 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~ 41 (364)
-++||.|+|..|+..++++... .++-|.|-+. +++..
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r--~~~~~ 166 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCR--TPSTR 166 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECC--CHHHH
Confidence 4799999999999988888654 7777777775 45543
No 347
>PLN02702 L-idonate 5-dehydrogenase
Probab=62.94 E-value=24 Score=34.61 Aligned_cols=100 Identities=20% Similarity=0.237 Sum_probs=51.1
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEec-CCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQK-MKPEE 82 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~-~~p~~ 82 (364)
+|.|+|.|.+|+.+++++...+..++.+.+. +.+.+..+.++.- + ..+.++.+.-...+. .....
T Consensus 184 ~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~-------~-----~~~~~~~~~~~~~~~~~~~~~ 249 (364)
T PLN02702 184 NVLVMGAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGA-------D-----EIVLVSTNIEDVESEVEEIQK 249 (364)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCC-------C-----EEEecCcccccHHHHHHHHhh
Confidence 6899999999999988887777764444443 3333332222211 0 001111100000000 00000
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEE
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVII 119 (364)
. .. .++|+||+|+|.-...+.+-.+++.+.+-+.+
T Consensus 250 ~-~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 250 A-MG-GGIDVSFDCVGFNKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred h-cC-CCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 1 11 26899999998544556666777776643333
No 348
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=62.91 E-value=13 Score=38.05 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=20.3
Q ss_pred CceEEEEcc-ChHHHHHHHHHhcC
Q psy8544 2 AYKIGINGF-GRIGRLVLREALHR 24 (364)
Q Consensus 2 ~irVaInG~-G~IGr~vlr~l~~~ 24 (364)
++||+|.|. |+||..++-.|..+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~ 67 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASG 67 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 579999997 99999999888765
No 349
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=62.91 E-value=41 Score=31.98 Aligned_cols=30 Identities=27% Similarity=0.343 Sum_probs=24.8
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
+|.|+| .|.+|+.+++++...+..++++..
T Consensus 148 ~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~ 178 (329)
T cd05288 148 TVVVSAAAGAVGSVVGQIAKLLGARVVGIAG 178 (329)
T ss_pred EEEEecCcchHHHHHHHHHHHcCCEEEEEeC
Confidence 688999 799999999888877888776643
No 350
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=62.73 E-value=10 Score=36.98 Aligned_cols=31 Identities=29% Similarity=0.345 Sum_probs=27.3
Q ss_pred ceEEEEc-cChHHHHHHHHHhcC-CCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHR-NTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~-~~~ivaInd 33 (364)
+||.|-| +|.||+.+++.|.++ +.+|++++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 5899999 899999999999876 689988864
No 351
>PLN02206 UDP-glucuronate decarboxylase
Probab=62.66 E-value=9.1 Score=39.49 Aligned_cols=31 Identities=16% Similarity=0.454 Sum_probs=28.0
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
+||.|.| +|-||+.+++.|.+++.+|+++..
T Consensus 120 ~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~ 151 (442)
T PLN02206 120 LRVVVTGGAGFVGSHLVDRLMARGDSVIVVDN 151 (442)
T ss_pred CEEEEECcccHHHHHHHHHHHHCcCEEEEEeC
Confidence 6899999 999999999999999888988754
No 352
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=62.43 E-value=48 Score=30.59 Aligned_cols=30 Identities=17% Similarity=0.081 Sum_probs=24.7
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEe
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
-||.|+|-|.+|..-++.|.+.+-.|+.|.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvs 39 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIA 39 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEc
Confidence 379999999999999999988866665554
No 353
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=62.40 E-value=41 Score=32.26 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=25.6
Q ss_pred ceEEEEccChHHHHHHHHHhcCC-CcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRN-TPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~-~~ivaInd 33 (364)
-+|.|.|.|.+||.++++|.+++ -+|..+|.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R 155 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNR 155 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 37899999999999999999876 46666665
No 354
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.29 E-value=31 Score=33.97 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=24.5
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEe
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
.+|+|.| .|.+|+-+++.|.+++.++...+
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~ 189 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAH 189 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEEC
Confidence 3789999 89999999999987777776553
No 355
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=62.26 E-value=93 Score=30.83 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=28.5
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHh
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYML 45 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll 45 (364)
+|.|.| .|.||+.+++++...+++++++.. +.+....+.
T Consensus 196 ~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~---s~~~~~~~~ 235 (393)
T cd08246 196 NVLIWGASGGLGSMAIQLARAAGANPVAVVS---SEEKAEYCR 235 (393)
T ss_pred EEEEECCCcHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHH
Confidence 688999 599999999888777888776643 344444443
No 356
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=62.17 E-value=3.3 Score=44.95 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.1
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT 26 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~ 26 (364)
.||.|+|.|-+|..+++.|...++
T Consensus 339 ~kVLIvGaGGLGs~VA~~La~~GV 362 (664)
T TIGR01381 339 LKVLLLGAGTLGCNVARCLIGWGV 362 (664)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCC
Confidence 589999999999999999986544
No 357
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=62.14 E-value=81 Score=29.75 Aligned_cols=31 Identities=26% Similarity=0.243 Sum_probs=26.3
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeCC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGINDP 34 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd~ 34 (364)
+|.|+| .|.+|+.+++++...+..++.+.+.
T Consensus 142 ~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~ 173 (324)
T cd08292 142 WLIQNAAGGAVGKLVAMLAAARGINVINLVRR 173 (324)
T ss_pred EEEEcccccHHHHHHHHHHHHCCCeEEEEecC
Confidence 688998 7999999999888888888877664
No 358
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=62.07 E-value=11 Score=37.56 Aligned_cols=36 Identities=31% Similarity=0.285 Sum_probs=28.4
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHH
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLA 42 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a 42 (364)
||||+|.|.+|+.++..+...+++|+.. |+ +++.+.
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~-D~--~~~~~~ 44 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAW-DP--APGAEA 44 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEE-eC--CHHHHH
Confidence 6999999999999999888889997654 44 455433
No 359
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=61.73 E-value=44 Score=29.15 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=21.2
Q ss_pred CccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCC
Q psy8544 89 GAEYIVESTGVFKTKDTASAHLKGGAKKVIITAP 122 (364)
Q Consensus 89 gvDiV~estG~f~s~e~a~~hl~aGakkVIIsap 122 (364)
.+|+|+-+||.-- ..-...++.|+ +||+..
T Consensus 71 ~ADIVvsAtg~~~--~i~~~~ikpGa--~Vidvg 100 (140)
T cd05212 71 DADVVVVGSPKPE--KVPTEWIKPGA--TVINCS 100 (140)
T ss_pred hCCEEEEecCCCC--ccCHHHcCCCC--EEEEcC
Confidence 6899999998762 12345778898 777543
No 360
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=61.63 E-value=38 Score=33.39 Aligned_cols=28 Identities=14% Similarity=0.370 Sum_probs=22.6
Q ss_pred eEEEEccChHHHHHHHHHhcCCCc-EEEE
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTP-VVGI 31 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~-ivaI 31 (364)
+|.|+|.|.+|+.+++++...+.. ++++
T Consensus 186 ~vlI~g~g~vG~~a~~~a~~~G~~~v~~~ 214 (365)
T cd05279 186 TCAVFGLGGVGLSVIMGCKAAGASRIIAV 214 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 688999999999999888777775 4444
No 361
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=61.50 E-value=11 Score=36.31 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=27.1
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
|||.|.| +|-||+.+++.|.+++.+|+++..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~ 32 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDN 32 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEec
Confidence 4899999 899999999999888888888753
No 362
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.37 E-value=33 Score=33.42 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=19.5
Q ss_pred eEEEEccCh-HHHHHHHHHhcCCCcE
Q psy8544 4 KIGINGFGR-IGRLVLREALHRNTPV 28 (364)
Q Consensus 4 rVaInG~G~-IGr~vlr~l~~~~~~i 28 (364)
+|.|.|.|. +||-+..+|.+++..|
T Consensus 161 ~vvViG~gg~vGkpia~~L~~~gatV 186 (283)
T PRK14192 161 HAVVVGRSAILGKPMAMMLLNANATV 186 (283)
T ss_pred EEEEECCcHHHHHHHHHHHHhCCCEE
Confidence 788999765 9999888887775544
No 363
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=61.22 E-value=11 Score=37.53 Aligned_cols=32 Identities=19% Similarity=0.192 Sum_probs=28.1
Q ss_pred CceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 2 AYKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 2 ~irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.+||.|.| +|-||+.+++.|.+++.+|+++..
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCCCEEEEEEe
Confidence 36999999 899999999999988888888754
No 364
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=61.11 E-value=5 Score=40.10 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=25.1
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC-cEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT-PVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~-~ivaInd 33 (364)
-||.|+|.|.+|..++..|...++ +|+.|.+
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 56 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDR 56 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 589999999999999999987766 5554543
No 365
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=60.81 E-value=18 Score=36.72 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=29.8
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHH
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYL 41 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~ 41 (364)
.+|-|.|+|++|+.+++.|.+++.+++.|.. +++..
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~---~~~~~ 267 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKEGYSVKLIER---DPERA 267 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEC---CHHHH
Confidence 5799999999999999999888888888853 55543
No 366
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=60.69 E-value=16 Score=35.29 Aligned_cols=43 Identities=28% Similarity=0.449 Sum_probs=35.2
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcc
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYD 48 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~yd 48 (364)
|++|.+|+||.|..+.+-|.+++-++|+- |. +++.+..+-.|.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~y-D~--n~~av~~~~~~g 43 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGY-DV--NQTAVEELKDEG 43 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEE-cC--CHHHHHHHHhcC
Confidence 48999999999999999999998888766 33 677777777654
No 367
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=60.49 E-value=17 Score=28.41 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=20.3
Q ss_pred ceEEEEccChHHHHHHHHHhcCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRN 25 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~ 25 (364)
.+++|.|+|.+|+.+++.|.+..
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~ 46 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEG 46 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC
Confidence 48999999999999999988763
No 368
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=60.45 E-value=36 Score=32.53 Aligned_cols=90 Identities=21% Similarity=0.193 Sum_probs=49.2
Q ss_pred eEEEEccChHHHHHHHHHhcCCCc-EEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTP-VVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~-ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
+|.|+|.|.+|+.+++++...++. ++++.. +.+....+-++. . + ..++...-... .+ ..
T Consensus 162 ~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~---~~~~~~~~~~~g----~---~-------~~~~~~~~~~~-~~--~~ 221 (334)
T cd08234 162 SVLVFGAGPIGLLLAQLLKLNGASRVTVAEP---NEEKLELAKKLG----A---T-------ETVDPSREDPE-AQ--KE 221 (334)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEECC---CHHHHHHHHHhC----C---e-------EEecCCCCCHH-HH--HH
Confidence 688999999999999988877777 554533 344443332221 0 0 11111100000 00 00
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCCC
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGAK 115 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGak 115 (364)
. ...++|++|+|+|.-...+.+-.+++.+.+
T Consensus 222 ~--~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~ 252 (334)
T cd08234 222 D--NPYGFDVVIEATGVPKTLEQAIEYARRGGT 252 (334)
T ss_pred h--cCCCCcEEEECCCChHHHHHHHHHHhcCCE
Confidence 1 123799999999754444455567766653
No 369
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.45 E-value=12 Score=35.97 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=25.3
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEe
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
.||+|+|.|.+|..++..+...+.+|+.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d 33 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYD 33 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEe
Confidence 479999999999999998887777766554
No 370
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=60.04 E-value=72 Score=29.84 Aligned_cols=86 Identities=23% Similarity=0.303 Sum_probs=51.0
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
+|.|.| .|.+|+.+++++...+..+.++.. +.+..-.+.++ |. + ...... ++
T Consensus 135 ~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~----g~---~------~~~~~~--------~~--- 187 (305)
T cd08270 135 RVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLREL----GA---A------EVVVGG--------SE--- 187 (305)
T ss_pred EEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHc----CC---c------EEEecc--------cc---
Confidence 688999 599999999988777777776643 33443333322 10 0 111111 01
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEE
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVII 119 (364)
+...++|++++|+|.. ..+.+-.+++.+.+.|.+
T Consensus 188 --~~~~~~d~vl~~~g~~-~~~~~~~~l~~~G~~v~~ 221 (305)
T cd08270 188 --LSGAPVDLVVDSVGGP-QLARALELLAPGGTVVSV 221 (305)
T ss_pred --ccCCCceEEEECCCcH-HHHHHHHHhcCCCEEEEE
Confidence 1113799999999864 455566777776644434
No 371
>PRK05442 malate dehydrogenase; Provisional
Probab=60.02 E-value=19 Score=35.76 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=19.4
Q ss_pred CceEEEEcc-ChHHHHHHHHHhcC
Q psy8544 2 AYKIGINGF-GRIGRLVLREALHR 24 (364)
Q Consensus 2 ~irVaInG~-G~IGr~vlr~l~~~ 24 (364)
+.||+|.|. |.||..++-.|..+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~ 27 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASG 27 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhh
Confidence 579999996 99999988877654
No 372
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=59.50 E-value=33 Score=33.04 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=19.6
Q ss_pred EEc-cChHHHHHHHHHhcCC--CcEEEE
Q psy8544 7 ING-FGRIGRLVLREALHRN--TPVVGI 31 (364)
Q Consensus 7 InG-~G~IGr~vlr~l~~~~--~~ivaI 31 (364)
|-| .|.+|+.+++.|.+++ .+|.++
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~ 29 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVRVL 29 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEEEc
Confidence 567 9999999999999884 555433
No 373
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=59.38 E-value=11 Score=39.51 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=31.8
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHh
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYML 45 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll 45 (364)
.+|||+|+|.+|..+++.|.+++++|..-|. +++....+.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr---~~~~~~~l~ 41 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNR---TYEKTEEFV 41 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHH
Confidence 4899999999999999999988888776654 455554444
No 374
>PRK08219 short chain dehydrogenase; Provisional
Probab=59.36 E-value=14 Score=33.05 Aligned_cols=31 Identities=19% Similarity=0.082 Sum_probs=26.4
Q ss_pred CceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 2 AYKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 2 ~irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
+.++-|.| .|.||+.+++.|.++ .+|+++..
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r 34 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGR 34 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeC
Confidence 35799999 899999999999888 88877754
No 375
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=59.33 E-value=18 Score=35.14 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=22.4
Q ss_pred EEEEccChHHHHHHHHHhcCCC-cEEEEeCC
Q psy8544 5 IGINGFGRIGRLVLREALHRNT-PVVGINDP 34 (364)
Q Consensus 5 VaInG~G~IGr~vlr~l~~~~~-~ivaInd~ 34 (364)
|+|.|.|.+|..+...+..+++ +|+-+ |.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~-Di 30 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLL-DI 30 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEE-eC
Confidence 6899999999999887776644 76555 54
No 376
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.26 E-value=50 Score=32.41 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=20.4
Q ss_pred ceEEEEccCh-HHHHHHHHHhcCCCcEE
Q psy8544 3 YKIGINGFGR-IGRLVLREALHRNTPVV 29 (364)
Q Consensus 3 irVaInG~G~-IGr~vlr~l~~~~~~iv 29 (364)
-+|.|+|.|. +|+.+..+|.+++-.+.
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVt 186 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVT 186 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEE
Confidence 3788999766 99998888877665553
No 377
>PRK07877 hypothetical protein; Provisional
Probab=59.19 E-value=4.5 Score=44.58 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=55.6
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC--cEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEEC-CEEEEEEecC-
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT--PVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVN-GKKIAVFQKM- 78 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~--~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~-gk~I~v~~~~- 78 (364)
-||+|+|.| +|..++..|...++ +|+-|..-..++..+=..+-..+.-|+.+..+-. ..-..+| .-.|..+.+.
T Consensus 108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~-~~l~~inp~i~v~~~~~~i 185 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAA-RRIAELDPYLPVEVFTDGL 185 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHH-HHHHHHCCCCEEEEEeccC
Confidence 589999999 89999988875553 3322211111111111211111223554432111 1111122 1133333321
Q ss_pred CCCCCCCcCCCccEEEeecCCCCCHhhHH-HHHhCCCCEEEEeCCC
Q psy8544 79 KPEEIPWSQTGAEYIVESTGVFKTKDTAS-AHLKGGAKKVIITAPS 123 (364)
Q Consensus 79 ~p~~~~w~~~gvDiV~estG~f~s~e~a~-~hl~aGakkVIIsaps 123 (364)
++++++=--.++|+||||+..|.++-... .+.+.|. -+|++.+
T Consensus 186 ~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~i--P~i~~~~ 229 (722)
T PRK07877 186 TEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRI--PVLMATS 229 (722)
T ss_pred CHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCC--CEEEEcC
Confidence 23332200137999999999987765443 3344554 5565554
No 378
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=58.84 E-value=13 Score=37.60 Aligned_cols=31 Identities=19% Similarity=0.097 Sum_probs=26.1
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
-+|.|.|+|++|+.+++.|...+.+|+.++.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~ 198 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDI 198 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEEC
Confidence 4799999999999999999877777766653
No 379
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.78 E-value=60 Score=33.10 Aligned_cols=91 Identities=18% Similarity=0.257 Sum_probs=52.9
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
.+|.|.|.|.+|+.++|.|.+++..|+.. |....++....|-++ . .| +.++....+..
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~-d~~~~~~~~~~l~~~--------------~-----~g--i~~~~g~~~~~ 63 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAY-DAELKPERVAQIGKM--------------F-----DG--LVFYTGRLKDA 63 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE-eCCCCchhHHHHhhc--------------c-----CC--cEEEeCCCCHH
Confidence 47999999999999999999888876654 431111111111100 0 01 12221111211
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEe
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIIT 120 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIs 120 (364)
+ + .+.|+||-+.|.-.+.+....+.+.|. .|++
T Consensus 64 ~-~--~~~d~vv~spgi~~~~p~~~~a~~~~i--~v~~ 96 (445)
T PRK04308 64 L-D--NGFDILALSPGISERQPDIEAFKQNGG--RVLG 96 (445)
T ss_pred H-H--hCCCEEEECCCCCCCCHHHHHHHHcCC--cEEE
Confidence 1 1 267999999998877666666666666 4554
No 380
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=58.72 E-value=41 Score=31.90 Aligned_cols=93 Identities=17% Similarity=0.180 Sum_probs=52.0
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
+|.|+| .|.+|+.+++++..++..++++... .+..-.+.++. - ...++.+... .+....
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g----~----------~~v~~~~~~~---~~~~~~ 208 (326)
T cd08289 149 PVLVTGATGGVGSLAVSILAKLGYEVVASTGK---ADAADYLKKLG----A----------KEVIPREELQ---EESIKP 208 (326)
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHHcC----C----------CEEEcchhHH---HHHHHh
Confidence 688999 5999999999888878888777543 33333332211 0 0111111100 000001
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEE
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVII 119 (364)
+...++|+|++|+|. ...+.+-.+++.+..-+.+
T Consensus 209 --~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~i~~ 242 (326)
T cd08289 209 --LEKQRWAGAVDPVGG-KTLAYLLSTLQYGGSVAVS 242 (326)
T ss_pred --hccCCcCEEEECCcH-HHHHHHHHHhhcCCEEEEE
Confidence 112368999999987 3555566677665533333
No 381
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=58.67 E-value=5.7 Score=39.87 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=20.8
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT 26 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~ 26 (364)
.||.|+|.|-+|..+++.|...++
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gv 52 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGV 52 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCC
Confidence 589999999999999999876544
No 382
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=58.64 E-value=29 Score=33.61 Aligned_cols=90 Identities=17% Similarity=0.166 Sum_probs=49.2
Q ss_pred eEEEEccChHHHHHHHHHhcCCCc-EEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTP-VVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~-ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
+|.|+|.|.+|..+++++...+.+ ++.+. . +.+...++-++.. ...++.+.....+ ....
T Consensus 178 ~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~-~--~~~~~~~~~~~g~--------------~~~~~~~~~~~~~--~~~~ 238 (350)
T cd08240 178 PVVIIGAGGLGLMALALLKALGPANIIVVD-I--DEAKLEAAKAAGA--------------DVVVNGSDPDAAK--RIIK 238 (350)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCeEEEEe-C--CHHHHHHHHHhCC--------------cEEecCCCccHHH--HHHH
Confidence 688999999999999988877774 44443 2 3444334332210 1112221111100 0000
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCC
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGA 114 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGa 114 (364)
. +.. ++|++|+++|.....+.+-.++..+.
T Consensus 239 ~-~~~-~~d~vid~~g~~~~~~~~~~~l~~~g 268 (350)
T cd08240 239 A-AGG-GVDAVIDFVNNSATASLAFDILAKGG 268 (350)
T ss_pred H-hCC-CCcEEEECCCCHHHHHHHHHHhhcCC
Confidence 0 222 69999999985445555666676655
No 383
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.54 E-value=61 Score=33.14 Aligned_cols=83 Identities=14% Similarity=0.154 Sum_probs=50.7
Q ss_pred ceEEEEccChHHHHHHHHHhcC--CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEec-CC
Q psy8544 3 YKIGINGFGRIGRLVLREALHR--NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQK-MK 79 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~--~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~-~~ 79 (364)
.||.|.|.|..|+..++.|..+ +.+|. +.|....+....+ |.- | +.++.. .+
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~-~~D~~~~~~~~~~---------------------l~~-g--~~~~~g~~~ 62 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVK-VIDTRETPPGQEQ---------------------LPE-D--VELHSGGWN 62 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEE-EEeCCCCchhHHH---------------------hhc-C--CEEEeCCCC
Confidence 4799999999999999999877 36664 4564211110001 100 1 222212 34
Q ss_pred CCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCC
Q psy8544 80 PEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGA 114 (364)
Q Consensus 80 p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGa 114 (364)
++.++ +.|+|+-|.|.-.+.+....+.+.|.
T Consensus 63 ~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~gi 93 (438)
T PRK04663 63 LEWLL----EADLVVTNPGIALATPEIQQVLAAGI 93 (438)
T ss_pred hHHhc----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 55453 57999999998777666666666666
No 384
>KOG0455|consensus
Probab=58.35 E-value=9.9 Score=36.91 Aligned_cols=33 Identities=27% Similarity=0.551 Sum_probs=26.6
Q ss_pred CceEEEEccChHHHHHHHHHhcC---------CCcEEEEeCC
Q psy8544 2 AYKIGINGFGRIGRLVLREALHR---------NTPVVGINDP 34 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~---------~~~ivaInd~ 34 (364)
.++|+|+|.|-|||.+++.+... .+.+|+|.+.
T Consensus 3 ~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~ 44 (364)
T KOG0455|consen 3 KVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDS 44 (364)
T ss_pred cccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecc
Confidence 47899999999999999877531 3688888875
No 385
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=58.17 E-value=42 Score=31.76 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=25.3
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
+|.|.| .|.+|+.+++.+...+..++++..
T Consensus 165 ~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~ 195 (332)
T cd08259 165 TVLVTGAGGGVGIHAIQLAKALGARVIAVTR 195 (332)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCeEEEEeC
Confidence 689999 799999999999887888776653
No 386
>PRK09291 short chain dehydrogenase; Provisional
Probab=58.08 E-value=16 Score=33.54 Aligned_cols=33 Identities=24% Similarity=0.199 Sum_probs=28.0
Q ss_pred CCceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 1 MAYKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 1 m~irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
|..+|-|.| .|.||+.+++.|.+++..++++..
T Consensus 1 m~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r 34 (257)
T PRK09291 1 MSKTILITGAGSGFGREVALRLARKGHNVIAGVQ 34 (257)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 545799999 899999999999988888887654
No 387
>PRK08223 hypothetical protein; Validated
Probab=58.00 E-value=9.9 Score=37.27 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=20.5
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT 26 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~ 26 (364)
-||.|+|.|-+|..++..|...++
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGV 51 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGI 51 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCC
Confidence 489999999999999998876544
No 388
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=57.89 E-value=48 Score=31.70 Aligned_cols=138 Identities=20% Similarity=0.239 Sum_probs=68.5
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEEI 83 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~~ 83 (364)
+|.|+|.|.+|+.+++++...++.++.+... .+.+....+.++ |- . .+ +.+.-... +....+
T Consensus 167 ~vlI~g~g~~g~~~~~la~~~G~~v~~~~~~-~~~~~~~~~~~~----g~-~-~~---------~~~~~~~~--~~l~~~ 228 (306)
T cd08258 167 TVVVFGPGPIGLLAAQVAKLQGATVVVVGTE-KDEVRLDVAKEL----GA-D-AV---------NGGEEDLA--ELVNEI 228 (306)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHh----CC-c-cc---------CCCcCCHH--HHHHHH
Confidence 5788889999999999988878887666321 133333333322 11 0 00 00000000 000000
Q ss_pred CCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCCCCCeEEcccCcc-ccCCCCCeEecCCchhhhHHhHHHHH
Q psy8544 84 PWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSKDAPMFVCGVNLD-KYDPSHSVVSNASCTTNCLAPLAKVI 162 (364)
Q Consensus 84 ~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~d~p~vV~gVN~~-~~~~~~~IISnaSCTTn~Lap~lk~L 162 (364)
....++|++++|.|.-...+....+++.+.+-+.+...+ +.+ +.+|-. .+.....|..+-.++...+.-+++.+
T Consensus 229 -~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~---~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~ 303 (306)
T cd08258 229 -TDGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFG-PLA---ASIDVERIIQKELSVIGSRSSTPASWETALRLL 303 (306)
T ss_pred -cCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccC-CCC---cccCHHHHhhcCcEEEEEecCchHhHHHHHHHH
Confidence 112369999999875334444556776665444444433 111 122211 11223455555555566666666655
Q ss_pred hh
Q psy8544 163 HD 164 (364)
Q Consensus 163 ~d 164 (364)
++
T Consensus 304 ~~ 305 (306)
T cd08258 304 AS 305 (306)
T ss_pred hc
Confidence 43
No 389
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=57.83 E-value=13 Score=34.97 Aligned_cols=30 Identities=27% Similarity=0.468 Sum_probs=25.7
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
||.|.| +|.||+.+++.|.+++.+|+++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCC
Confidence 688999 899999999999888778876643
No 390
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=57.65 E-value=19 Score=27.46 Aligned_cols=29 Identities=21% Similarity=0.159 Sum_probs=24.0
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEe
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
||.|+|.|.+|-.++..|.+.+.++.-|.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~ 29 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIE 29 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEe
Confidence 78999999999999999988766655443
No 391
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=56.95 E-value=92 Score=29.84 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=23.3
Q ss_pred eEEEEccChHHHHHHHHHhcCCC-cEEEEe
Q psy8544 4 KIGINGFGRIGRLVLREALHRNT-PVVGIN 32 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~-~ivaIn 32 (364)
+|.|+|.|.+|+.+++++...++ .++++.
T Consensus 168 ~VLI~g~g~vG~~~~~lak~~G~~~v~~~~ 197 (339)
T cd08232 168 RVLVTGAGPIGALVVAAARRAGAAEIVATD 197 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEEC
Confidence 68899999999999988877777 565553
No 392
>PRK08017 oxidoreductase; Provisional
Probab=56.83 E-value=17 Score=33.30 Aligned_cols=33 Identities=24% Similarity=0.172 Sum_probs=27.2
Q ss_pred CCceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 1 MAYKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 1 m~irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
|.-+|.|.| .|.||+.+++.|.+++.+++++..
T Consensus 1 m~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r 34 (256)
T PRK08017 1 MQKSVLITGCSSGIGLEAALELKRRGYRVLAACR 34 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 544799999 799999999999888778777654
No 393
>PRK14982 acyl-ACP reductase; Provisional
Probab=56.79 E-value=19 Score=36.22 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=24.5
Q ss_pred ceEEEEc-cChHHHHHHHHHhcC-CC-cEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHR-NT-PVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~-~~-~ivaInd 33 (364)
.+|.|.| .|.||+.++|.|.++ +. .++.+|.
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R 189 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVAR 189 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence 4799999 599999999999764 43 6666654
No 394
>PLN02240 UDP-glucose 4-epimerase
Probab=56.68 E-value=15 Score=35.54 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=27.3
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.||.|.| +|.||+.+++.|.+++.+|+++..
T Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 6 RTILVTGGAGYIGSHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 5899999 899999999999988888888753
No 395
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=56.11 E-value=15 Score=36.07 Aligned_cols=31 Identities=35% Similarity=0.507 Sum_probs=27.9
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
+||-|-| +|-||+.+++.|.+++.+|+++..
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 5899999 899999999999988888988854
No 396
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=55.85 E-value=22 Score=34.22 Aligned_cols=95 Identities=19% Similarity=0.205 Sum_probs=51.4
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCC-cEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNT-PVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPE 81 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~-~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~ 81 (364)
+|.|+| .|.+|+..++++...+. +|+++.. +.+....+.+ .+|- +. .++.+.-.+. +...
T Consensus 157 ~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~---~lGa---------~~-vi~~~~~~~~--~~i~ 218 (345)
T cd08293 157 TMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKS---ELGF---------DA-AINYKTDNVA--ERLR 218 (345)
T ss_pred EEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHH---hcCC---------cE-EEECCCCCHH--HHHH
Confidence 689999 59999999998877787 6877754 2343333321 0111 01 1111000000 0000
Q ss_pred CCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEE
Q psy8544 82 EIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119 (364)
Q Consensus 82 ~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVII 119 (364)
.+. ..++|+||||+|... .+.+-.+++.|.+-|.+
T Consensus 219 ~~~--~~gvd~vid~~g~~~-~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 219 ELC--PEGVDVYFDNVGGEI-SDTVISQMNENSHIILC 253 (345)
T ss_pred HHC--CCCceEEEECCCcHH-HHHHHHHhccCCEEEEE
Confidence 111 137999999998653 34555677666644434
No 397
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=55.57 E-value=16 Score=35.18 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=24.5
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEe
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
|||-|.| .|.||+.+++.|.+++ +++++.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~ 30 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALD 30 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEec
Confidence 3899999 8999999999998876 676664
No 398
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=55.47 E-value=17 Score=35.69 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=27.5
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
+||-|.| +|.||+.+++.|.+++.+|+++.+
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r 42 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQRGYTVHATLR 42 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 6899999 899999999999988888887654
No 399
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=55.44 E-value=29 Score=33.64 Aligned_cols=40 Identities=25% Similarity=0.434 Sum_probs=29.4
Q ss_pred ceEEEEccChHHHHHHHHHhcCC----CcEEEEeCCCCCHHHHHHHh
Q psy8544 3 YKIGINGFGRIGRLVLREALHRN----TPVVGINDPHLSVDYLAYML 45 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~----~~ivaInd~~~~~~~~a~ll 45 (364)
+||++.|+|.+|+.+++-|.+++ .+|. |.++ +.+...++.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~-v~~~--~~e~~~~l~ 45 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEII-VTNR--SEEKRAALA 45 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEE-EeCC--CHHHHHHHH
Confidence 69999999999999999998874 3444 4444 466554443
No 400
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=55.43 E-value=15 Score=34.98 Aligned_cols=30 Identities=27% Similarity=0.352 Sum_probs=26.6
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
+|.|.| .|.||+.+++.|.+++.+|+++..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r 32 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGEEVRVLVR 32 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCCEEEEEEe
Confidence 799999 899999999999988778887764
No 401
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=55.05 E-value=55 Score=32.95 Aligned_cols=106 Identities=18% Similarity=0.171 Sum_probs=52.2
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCC---cEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCe-EEECCEEE-EEEec
Q psy8544 4 KIGING-FGRIGRLVLREALHRNT---PVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNN-IVVNGKKI-AVFQK 77 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~---~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~-l~i~gk~I-~v~~~ 77 (364)
+|.|+| .|.||...++++...+. .|+++ +. +.+.+..+.++ ++. .....|-. ..++-+.. .+.
T Consensus 178 ~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~-~~--~~~r~~~a~~~---~~~---~~~~~Ga~~~~i~~~~~~~~~-- 246 (410)
T cd08238 178 NTAILGGAGPMGLMAIDYAIHGPIGPSLLVVT-DV--NDERLARAQRL---FPP---EAASRGIELLYVNPATIDDLH-- 246 (410)
T ss_pred EEEEEeCCCHHHHHHHHHHHhcccCCceEEEE-cC--CHHHHHHHHHh---ccc---cccccCceEEEECCCccccHH--
Confidence 689998 79999999888766533 56655 32 34444333321 000 00000101 11221100 000
Q ss_pred CCCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeC
Q psy8544 78 MKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITA 121 (364)
Q Consensus 78 ~~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsa 121 (364)
+...++ ....++|+||+++|...+.+.+-..++.+.+.+++..
T Consensus 247 ~~v~~~-t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g 289 (410)
T cd08238 247 ATLMEL-TGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAG 289 (410)
T ss_pred HHHHHH-hCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEc
Confidence 000001 0123799999999865555566667765555555543
No 402
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=54.83 E-value=80 Score=31.50 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=23.7
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEe
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
+|.|+| .|.||+.+++++...+..++.+.
T Consensus 192 ~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~ 221 (398)
T TIGR01751 192 NVLIWGAAGGLGSYATQLARAGGGNPVAVV 221 (398)
T ss_pred EEEEEcCCcHHHHHHHHHHHHcCCeEEEEc
Confidence 688999 59999999988877777766553
No 403
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=54.59 E-value=19 Score=32.40 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=25.9
Q ss_pred EEEEc-cChHHHHHHHHHhcCCCcEEEEeCC
Q psy8544 5 IGING-FGRIGRLVLREALHRNTPVVGINDP 34 (364)
Q Consensus 5 VaInG-~G~IGr~vlr~l~~~~~~ivaInd~ 34 (364)
|-|.| +|.||+.+++.|.+++.+++++...
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~ 31 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRS 31 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESC
T ss_pred EEEEccCCHHHHHHHHHHHHcCCcccccccc
Confidence 67899 9999999999999997787777664
No 404
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=54.52 E-value=1.1e+02 Score=29.20 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=28.8
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHH
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYM 44 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~l 44 (364)
+|.|+|.|.+|+.+++++...+..++++.. +.+...++
T Consensus 162 ~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~---s~~~~~~~ 199 (337)
T cd08261 162 TVLVVGAGPIGLGVIQVAKARGARVIVVDI---DDERLEFA 199 (337)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEECC---CHHHHHHH
Confidence 688999999999999988887888877743 34444443
No 405
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=54.24 E-value=18 Score=35.47 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=23.8
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC--cEEEEe
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT--PVVGIN 32 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~--~ivaIn 32 (364)
|||+|+|.|.||..++..|..++. +++-+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D 32 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVD 32 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEE
Confidence 489999999999999998887753 555443
No 406
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=54.10 E-value=14 Score=37.35 Aligned_cols=30 Identities=27% Similarity=0.243 Sum_probs=24.3
Q ss_pred ceEEEEccChHHHHHHHHHhcC-CCcEEEEe
Q psy8544 3 YKIGINGFGRIGRLVLREALHR-NTPVVGIN 32 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~-~~~ivaIn 32 (364)
|||.+.|.|.+||.++..++.+ +.+|+.|.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd 31 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVD 31 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEE
Confidence 4899999999999776655555 88888886
No 407
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=53.82 E-value=92 Score=29.62 Aligned_cols=30 Identities=13% Similarity=0.188 Sum_probs=25.0
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
+|.|.| .|.+|+.+++++...+.+++++..
T Consensus 143 ~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~ 173 (327)
T PRK10754 143 QFLFHAAAGGVGLIACQWAKALGAKLIGTVG 173 (327)
T ss_pred EEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC
Confidence 688997 899999999888777888877754
No 408
>PRK07326 short chain dehydrogenase; Provisional
Probab=53.63 E-value=20 Score=32.46 Aligned_cols=31 Identities=19% Similarity=0.043 Sum_probs=26.6
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.+|-|.| .|.||+.+++.|.+++.+|+.+..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 4699999 899999999999888888877753
No 409
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=53.42 E-value=16 Score=37.68 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=30.6
Q ss_pred CceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHh
Q psy8544 2 AYKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYML 45 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll 45 (364)
+|||||.|+|.+|..+...|.+ +++|++++- +++.+..|-
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~---~~~~ve~l~ 45 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDV---NKKRILELK 45 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CCEEEEEeC---CHHHHHHHH
Confidence 4799999999999999988766 588888753 565554443
No 410
>PLN02572 UDP-sulfoquinovose synthase
Probab=52.86 E-value=18 Score=37.17 Aligned_cols=30 Identities=20% Similarity=0.134 Sum_probs=27.0
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEe
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
.||-|-| .|.||+.+++.|.+++.+|+++.
T Consensus 48 k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 48 KKVMVIGGDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 5899999 89999999999998888888775
No 411
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.69 E-value=56 Score=32.04 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=28.9
Q ss_pred CccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCC--CCCeEEcccCcccc
Q psy8544 89 GAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSK--DAPMFVCGVNLDKY 138 (364)
Q Consensus 89 gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~--d~p~vV~gVN~~~~ 138 (364)
.+|+|+-++|..--.+ +.+++.|+ +||+.+.. +..-++-.|+.+..
T Consensus 201 ~ADIVI~avg~~~~v~--~~~ik~Ga--vVIDvgin~~~~gkl~GDVdf~~v 248 (284)
T PRK14179 201 KADILVVAIGRGHFVT--KEFVKEGA--VVIDVGMNRDENGKLIGDVDFDEV 248 (284)
T ss_pred hCCEEEEecCccccCC--HHHccCCc--EEEEecceecCCCCeecCccHHHH
Confidence 6899999997654332 34577888 88876532 12246666665544
No 412
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=52.66 E-value=72 Score=30.37 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=25.2
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
++.|.|.|.+|+.+++.|.+.+.+|...|.
T Consensus 119 ~vliiGaGg~g~aia~~L~~~g~~v~v~~R 148 (270)
T TIGR00507 119 RVLIIGAGGAARAVALPLLKADCNVIIANR 148 (270)
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 689999999999999999877667666654
No 413
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=52.48 E-value=55 Score=31.55 Aligned_cols=28 Identities=32% Similarity=0.323 Sum_probs=22.7
Q ss_pred eEEEEccChHHHHHHHHHhcCCC-cEEEE
Q psy8544 4 KIGINGFGRIGRLVLREALHRNT-PVVGI 31 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~-~ivaI 31 (364)
+|.|.|-|.+|+.+++++...+. .|+++
T Consensus 166 ~vlV~~~g~vg~~~~~la~~~G~~~v~~~ 194 (341)
T PRK05396 166 DVLITGAGPIGIMAAAVAKHVGARHVVIT 194 (341)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 68898999999999888876677 46666
No 414
>KOG2250|consensus
Probab=52.46 E-value=82 Score=33.23 Aligned_cols=99 Identities=18% Similarity=0.300 Sum_probs=57.1
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCC--------CCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEE
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDP--------HLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAV 74 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~--------~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v 74 (364)
.||.|-|||-||....+.|.+.+=.+|+|.|. .+|++.+..+- ...+.+.+ .++.+..-++ .+
T Consensus 252 kr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~G~l~np~Gid~~eL~~~~---~~k~~i~~---f~~~~~~~~~---~~ 322 (514)
T KOG2250|consen 252 KRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSKGVLINPDGIDIEELLDLA---DEKKTIKS---FDGAKLSYEG---YI 322 (514)
T ss_pred eEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCceeEECCCCCCHHHHHHHH---Hhhccccc---cccccccCcc---cc
Confidence 47999999999999988887665566666543 35666654443 22222211 1111111111 00
Q ss_pred EecCCCCCCCCcCCCccEEEeec-CCCCCHhhHHHHHhCCC
Q psy8544 75 FQKMKPEEIPWSQTGAEYIVEST-GVFKTKDTASAHLKGGA 114 (364)
Q Consensus 75 ~~~~~p~~~~w~~~gvDiV~est-G~f~s~e~a~~hl~aGa 114 (364)
. ..| -..|- ..+||.+=|+ ...++.+.|..-.+.|+
T Consensus 323 ~--~~~-~~~~v-~~~DI~vPCA~qn~I~~~nA~~lvak~~ 359 (514)
T KOG2250|consen 323 A--GLP-PWTLV-EKCDILVPCATQNEITGENAKALVAKGC 359 (514)
T ss_pred c--cCc-chhhH-hhCcEEeecCccCcccHhhHHHHHhcCC
Confidence 0 111 11233 3689999887 55677888887777777
No 415
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=51.76 E-value=1.2e+02 Score=29.17 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=23.2
Q ss_pred eEEEEccChHHHHHHHHHhcCCC-cEEEE
Q psy8544 4 KIGINGFGRIGRLVLREALHRNT-PVVGI 31 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~-~ivaI 31 (364)
+|.|+|.|.+|+.+++++...+. .++++
T Consensus 166 ~vlV~g~g~vg~~~~~la~~~G~~~v~~~ 194 (341)
T cd05281 166 SVLITGCGPIGLMAIAVAKAAGASLVIAS 194 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEE
Confidence 68899999999999998887777 46666
No 416
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=51.71 E-value=84 Score=30.35 Aligned_cols=28 Identities=29% Similarity=0.214 Sum_probs=23.0
Q ss_pred eEEEEccChHHHHHHHHHhcCCCc-EEEE
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTP-VVGI 31 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~-ivaI 31 (364)
+|.|.|.|.+|+.+++++...+.. ++++
T Consensus 165 ~vlI~g~g~vG~~a~~lak~~G~~~v~~~ 193 (343)
T cd05285 165 TVLVFGAGPIGLLTAAVAKAFGATKVVVT 193 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEE
Confidence 688999999999999988777777 5555
No 417
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=51.71 E-value=27 Score=33.29 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=24.4
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEe
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
+|.|+| .|.+|+.+++++...+..++++.
T Consensus 165 ~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~ 194 (325)
T cd08264 165 TVVVFGASGNTGIFAVQLAKMMGAEVIAVS 194 (325)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCeEEEEe
Confidence 689999 59999999999887787876664
No 418
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=51.66 E-value=9 Score=38.58 Aligned_cols=30 Identities=10% Similarity=0.069 Sum_probs=23.5
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC-cEEEEe
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT-PVVGIN 32 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~-~ivaIn 32 (364)
.||.|.|.|-+|..+++.|...++ +|.-++
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD 166 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVD 166 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 589999999999999999977655 343343
No 419
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=51.63 E-value=56 Score=31.15 Aligned_cols=90 Identities=17% Similarity=0.238 Sum_probs=50.5
Q ss_pred eEEEEc-cChHHHHHHHHHhcCC-CcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCC
Q psy8544 4 KIGING-FGRIGRLVLREALHRN-TPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPE 81 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~-~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~ 81 (364)
+|.|+| .|.+|+.+++++...+ ..++++... .+..-++.++ |- + -.++.+. .. . +...
T Consensus 152 ~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~---~~~~~~~~~~----g~---------~-~~~~~~~-~~-~-~~i~ 211 (336)
T cd08252 152 TLLIIGGAGGVGSIAIQLAKQLTGLTVIATASR---PESIAWVKEL----GA---------D-HVINHHQ-DL-A-EQLE 211 (336)
T ss_pred EEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCC---hhhHHHHHhc----CC---------c-EEEeCCc-cH-H-HHHH
Confidence 688999 7999999999888777 888777542 3333233221 10 0 1122110 00 0 0001
Q ss_pred CCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCC
Q psy8544 82 EIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAK 115 (364)
Q Consensus 82 ~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGak 115 (364)
...+ .++|++++|+|.-...+.+-.+++.+.+
T Consensus 212 ~~~~--~~~d~vl~~~~~~~~~~~~~~~l~~~g~ 243 (336)
T cd08252 212 ALGI--EPVDYIFCLTDTDQHWDAMAELIAPQGH 243 (336)
T ss_pred hhCC--CCCCEEEEccCcHHHHHHHHHHhcCCCE
Confidence 1111 3799999999854445556667766653
No 420
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=51.22 E-value=15 Score=38.31 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=31.1
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHh
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYML 45 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll 45 (364)
+|||+|+|++|+.+++.|.+++++|+..|. +++....+.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~dr---t~~~~~~l~ 39 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNR---TPEKTDEFL 39 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeC---CHHHHHHHH
Confidence 489999999999999999988888876664 455554554
No 421
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=51.19 E-value=22 Score=30.16 Aligned_cols=29 Identities=28% Similarity=0.269 Sum_probs=24.3
Q ss_pred EEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 5 IGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 5 VaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
|+|.|.|.||..+...|.+.+.+|..+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEc
Confidence 78999999999999988777777766655
No 422
>KOG2380|consensus
Probab=51.06 E-value=17 Score=36.78 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=23.3
Q ss_pred CceEEEEccChHHHHHHHHHhcCCCcE
Q psy8544 2 AYKIGINGFGRIGRLVLREALHRNTPV 28 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~~~~i 28 (364)
+.+|||.|||-.||.+.+-+...+..+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~l 78 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGL 78 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCcee
Confidence 468999999999999999998875555
No 423
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=51.01 E-value=41 Score=32.28 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=26.4
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeCC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGINDP 34 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd~ 34 (364)
+|.|+| .|.+|+.+++++...+.+++++.+.
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~ 180 (341)
T cd08290 149 WVIQNGANSAVGQAVIQLAKLLGIKTINVVRD 180 (341)
T ss_pred EEEEccchhHHHHHHHHHHHHcCCeEEEEEcC
Confidence 688998 6999999999888778888888764
No 424
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=50.91 E-value=34 Score=30.70 Aligned_cols=31 Identities=19% Similarity=0.148 Sum_probs=26.6
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.+|.|.| .|.||+.+++.|.+++.+|+.+..
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r 37 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDS 37 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 4799999 899999999999988777777764
No 425
>KOG1399|consensus
Probab=50.55 E-value=19 Score=37.45 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=25.9
Q ss_pred CceEEEEccChHHHHHHHHHhcCCCcEEEE
Q psy8544 2 AYKIGINGFGRIGRLVLREALHRNTPVVGI 31 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~~~~ivaI 31 (364)
+.+|+|+|.|..|-..+|.|.+++++++..
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vf 35 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVF 35 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEE
Confidence 568999999999999999998887777654
No 426
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.54 E-value=1.2e+02 Score=31.05 Aligned_cols=30 Identities=27% Similarity=0.223 Sum_probs=25.0
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDP 34 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~ 34 (364)
||.|+|.|..|+..++.|.+++.+|.. .|.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~-~D~ 31 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVV-SDR 31 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEE-ECC
Confidence 799999999999999999888877544 453
No 427
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=50.49 E-value=2.5e+02 Score=27.26 Aligned_cols=84 Identities=15% Similarity=0.133 Sum_probs=48.1
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEEI 83 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~~ 83 (364)
+|.|.|.|.+|...++++...+..++++.. +.+.+..+.++ | -...++- .+..
T Consensus 168 ~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~---~~~~~~~a~~~----G----------a~~vi~~--------~~~~-- 220 (329)
T TIGR02822 168 RLGLYGFGGSAHLTAQVALAQGATVHVMTR---GAAARRLALAL----G----------AASAGGA--------YDTP-- 220 (329)
T ss_pred EEEEEcCCHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHh----C----------Cceeccc--------cccC--
Confidence 689999999999888877766777766533 34433333321 1 1111210 0110
Q ss_pred CCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEE
Q psy8544 84 PWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKV 117 (364)
Q Consensus 84 ~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkV 117 (364)
..++|++++++|.-.+.+.+-..++.|-+-+
T Consensus 221 ---~~~~d~~i~~~~~~~~~~~~~~~l~~~G~~v 251 (329)
T TIGR02822 221 ---PEPLDAAILFAPAGGLVPPALEALDRGGVLA 251 (329)
T ss_pred ---cccceEEEECCCcHHHHHHHHHhhCCCcEEE
Confidence 1257888888876445555556676665333
No 428
>PRK07411 hypothetical protein; Validated
Probab=50.29 E-value=8 Score=39.35 Aligned_cols=24 Identities=17% Similarity=0.093 Sum_probs=20.6
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT 26 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~ 26 (364)
.||.|+|.|-+|-.++..|...++
T Consensus 39 ~~VlivG~GGlG~~va~~La~~Gv 62 (390)
T PRK07411 39 ASVLCIGTGGLGSPLLLYLAAAGI 62 (390)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCC
Confidence 589999999999999999876544
No 429
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=50.26 E-value=57 Score=31.27 Aligned_cols=30 Identities=13% Similarity=0.366 Sum_probs=24.6
Q ss_pred eEEEEccChHHHHHHHHHhcCC-CcEEEEeC
Q psy8544 4 KIGINGFGRIGRLVLREALHRN-TPVVGIND 33 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~-~~ivaInd 33 (364)
+|.|.|-|.+|+.+++++...+ ..++++..
T Consensus 170 ~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~ 200 (340)
T cd05284 170 TVVVIGVGGLGHIAVQILRALTPATVIAVDR 200 (340)
T ss_pred EEEEEcCcHHHHHHHHHHHHhCCCcEEEEeC
Confidence 5899997779999999887775 88887754
No 430
>smart00833 CobW_C Cobalamin synthesis protein cobW C-terminal domain. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis PUBMED:12869542. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression PUBMED:7765511.
Probab=50.07 E-value=27 Score=27.10 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=37.9
Q ss_pred EEEEEEeccCCCHHHHHHHHHHccCC--CCCccccccCCc--eEeecCCCCCce
Q psy8544 241 VDLTVRLCCDVTYDEIKAKVKAASQG--PMKGILGYTEDE--VVSSDFNGEVCS 290 (364)
Q Consensus 241 ~dl~~~l~k~~s~eei~~~l~~a~~~--~lkgil~~~e~~--~VS~df~~~~~s 290 (364)
.+++++...+.+.+++.+.|++-+.+ .+||++...+++ .+..++.++.++
T Consensus 2 ~s~~~~~~~~~~~~~l~~~l~~l~~~i~R~KG~v~~~~~~~~~~~~q~v~~~~~ 55 (92)
T smart00833 2 SSFVYRARRPFHPQRLLAALDELPEGVLRAKGFFWLASRPDLPGVLSGAGGRLR 55 (92)
T ss_pred EEEEEecCCCCCHHHHHHHHHhccCCeEEEEEEEEeCCCCCeEEEEEccCCeeE
Confidence 35677889999999999999987644 579999887764 455566766544
No 431
>PRK08328 hypothetical protein; Provisional
Probab=49.95 E-value=13 Score=34.94 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=21.4
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCc
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTP 27 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ 27 (364)
-||.|.|.|-+|..++..|...++.
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg 52 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVG 52 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCC
Confidence 4899999999999999999866553
No 432
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=49.73 E-value=12 Score=34.30 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=21.6
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCc
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTP 27 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ 27 (364)
.||.|.|.|-+|..+++.|...++.
T Consensus 20 s~VlviG~gglGsevak~L~~~GVg 44 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLAGID 44 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCC
Confidence 5899999999999999999866654
No 433
>PLN00198 anthocyanidin reductase; Provisional
Probab=49.41 E-value=22 Score=34.41 Aligned_cols=30 Identities=17% Similarity=0.198 Sum_probs=25.9
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEe
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
.+|.|-| +|-||+.+++.|.+++.+|+++.
T Consensus 10 ~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~ 40 (338)
T PLN00198 10 KTACVIGGTGFLASLLIKLLLQKGYAVNTTV 40 (338)
T ss_pred CeEEEECCchHHHHHHHHHHHHCCCEEEEEE
Confidence 5799999 99999999999998877876553
No 434
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=48.86 E-value=24 Score=37.02 Aligned_cols=39 Identities=23% Similarity=0.211 Sum_probs=30.6
Q ss_pred ceEEEEccChHHHHHHHHHhcC--CCcEEEEeCCCCCHHHHHHH
Q psy8544 3 YKIGINGFGRIGRLVLREALHR--NTPVVGINDPHLSVDYLAYM 44 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~--~~~ivaInd~~~~~~~~a~l 44 (364)
|||+|.|.|.||-.+.-+|.++ +++|+++. . +.+.+..|
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD-~--~~~~v~~l 42 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVD-I--SVPRIDAW 42 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEE-C--CHHHHHHH
Confidence 6999999999999888888776 68898884 3 66665444
No 435
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=48.80 E-value=24 Score=34.34 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=25.3
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.||-|.| +|-||+.+++.|.+++.+++.+-+
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~ 33 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVD 33 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 4899999 999999999999988666554433
No 436
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=48.60 E-value=16 Score=41.97 Aligned_cols=125 Identities=11% Similarity=0.121 Sum_probs=61.6
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC------cEEEEeCCCCCHHHHHHHhhcccc-cccCCcceee-----cCCeEEECCE
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT------PVVGINDPHLSVDYLAYMLKYDST-HGRFKGDVKT-----EGNNIVVNGK 70 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~------~ivaInd~~~~~~~~a~ll~ydS~-~g~~~~~v~~-----~~~~l~i~gk 70 (364)
.||.|+|.|.+|..+++.|...++ .|+-+..-.++...+-+-|-|... -|+.++.+-. -+-.+.+.-.
T Consensus 420 ~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~~l~~~Np~v~I~~~ 499 (1008)
T TIGR01408 420 LNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATLKINPQIKIDAH 499 (1008)
T ss_pred CcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 589999999999999998875555 333332111222222222222221 2554432211 1222222111
Q ss_pred EEEEEecCCCCC-C--C-CcCCCccEEEeecCCCCCHhhHH-HHHhCCCCEEEEeCCCC----CCCeEEccc
Q psy8544 71 KIAVFQKMKPEE-I--P-WSQTGAEYIVESTGVFKTKDTAS-AHLKGGAKKVIITAPSK----DAPMFVCGV 133 (364)
Q Consensus 71 ~I~v~~~~~p~~-~--~-w~~~gvDiV~estG~f~s~e~a~-~hl~aGakkVIIsaps~----d~p~vV~gV 133 (364)
.-.+.. +.++ + + |. +.|+|+.|+..+.++.+.- ...+.+. .+|.+... .+-+++|++
T Consensus 500 ~~~v~~--~~e~i~~~~f~~--~~dvVi~alDn~~aR~~vn~~c~~~~i--Pli~~gt~G~~G~v~v~ip~~ 565 (1008)
T TIGR01408 500 QNRVGP--ETETIFNDEFYE--KLDVVINALDNVEARRYVDSRCLAFLK--PLLESGTLGTKGNTQVVVPHL 565 (1008)
T ss_pred EeecCh--hhhhhhhHHHhh--CCCEEEECCCCHHHHHHHHHHHHHcCC--CEEEEeccCceeeEEEEeCCC
Confidence 111110 0111 1 1 43 7899999998876665443 3344444 55554432 345677765
No 437
>PRK06046 alanine dehydrogenase; Validated
Probab=48.47 E-value=39 Score=33.37 Aligned_cols=37 Identities=22% Similarity=0.176 Sum_probs=30.4
Q ss_pred ceEEEEccChHHHHHHHHHhcC-CCcEEEEeCCCCCHHHH
Q psy8544 3 YKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYL 41 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~-~~~ivaInd~~~~~~~~ 41 (364)
-+|+|.|+|.+|+..++++... +++.+.|-+. +++..
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r--~~~~~ 167 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDR--TKSSA 167 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECC--CHHHH
Confidence 4799999999999999988754 8899998886 55443
No 438
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=48.42 E-value=25 Score=34.34 Aligned_cols=29 Identities=24% Similarity=0.227 Sum_probs=23.7
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEE
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGI 31 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaI 31 (364)
|||+|.|.|.+|..+...|.+.+.+|.-+
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~ 29 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLW 29 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence 38999999999999999988766565444
No 439
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=48.10 E-value=1.1e+02 Score=29.30 Aligned_cols=30 Identities=17% Similarity=0.219 Sum_probs=25.1
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
+|.|+| .|.+|+.+++++...+.+++++.+
T Consensus 165 ~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~ 195 (350)
T cd08248 165 RVLILGGSGGVGTFAIQLLKAWGAHVTTTCS 195 (350)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCeEEEEeC
Confidence 688999 799999999988777888777654
No 440
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=48.04 E-value=22 Score=32.08 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=23.6
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
-+|||+|||.-|+....-|.+++++|+.-..
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr 35 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLR 35 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEec
Confidence 4799999999999999999888888764433
No 441
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=48.00 E-value=51 Score=32.71 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=19.3
Q ss_pred ceEEEEcc-ChHHHHHHHHHhcC
Q psy8544 3 YKIGINGF-GRIGRLVLREALHR 24 (364)
Q Consensus 3 irVaInG~-G~IGr~vlr~l~~~ 24 (364)
.||+|.|. |.||..++..|..+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~ 23 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASG 23 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhC
Confidence 48999996 99999999988765
No 442
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.00 E-value=27 Score=31.91 Aligned_cols=33 Identities=15% Similarity=-0.003 Sum_probs=27.4
Q ss_pred CCceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 1 MAYKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 1 m~irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
|...|-|.| .|.||+.+++.|.+++.+++.+..
T Consensus 1 ~~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r 34 (256)
T PRK12745 1 MRPVALVTGGRRGIGLGIARALAAAGFDLAINDR 34 (256)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCEEEEEec
Confidence 555688889 899999999999988878877753
No 443
>PRK07023 short chain dehydrogenase; Provisional
Probab=47.96 E-value=25 Score=32.11 Aligned_cols=30 Identities=17% Similarity=0.333 Sum_probs=25.9
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEe
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
+++-|.| .|.||+.+++.|.+++.+++.+.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G~~v~~~~ 32 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPGIAVLGVA 32 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCCCEEEEEe
Confidence 5899999 89999999999988887876654
No 444
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=47.90 E-value=27 Score=32.13 Aligned_cols=31 Identities=13% Similarity=0.286 Sum_probs=26.3
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
|+|.|.| .|.||+.+++.|.+++.+|+.+..
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r 32 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGR 32 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEEC
Confidence 4789999 899999999999888878776643
No 445
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=47.89 E-value=18 Score=34.78 Aligned_cols=29 Identities=7% Similarity=0.095 Sum_probs=23.8
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEe
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
|||-|.| ||- ||.+++.|.+++.++++--
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~ 30 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTV 30 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEE
Confidence 4888999 898 9999999987777876543
No 446
>PLN02583 cinnamoyl-CoA reductase
Probab=47.77 E-value=25 Score=33.71 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=26.4
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
+|.|.| +|.||+.+++.|.+++.+|+++..
T Consensus 8 ~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R 38 (297)
T PLN02583 8 SVCVMDASGYVGFWLVKRLLSRGYTVHAAVQ 38 (297)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEEEc
Confidence 689999 899999999999988888887653
No 447
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=47.73 E-value=16 Score=36.17 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=23.0
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
||.|+|.|-+|-.+++.|.-.++.=+.|-|
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD 30 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIID 30 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEc
Confidence 689999999999999988765554444444
No 448
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=47.38 E-value=1.1e+02 Score=29.96 Aligned_cols=30 Identities=13% Similarity=0.375 Sum_probs=24.4
Q ss_pred eEEEEccChHHHHHHHHHhcCCCc-EEEEeC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTP-VVGIND 33 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~-ivaInd 33 (364)
+|.|+|.|.+|+.+++++...+.. |+++..
T Consensus 185 ~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~ 215 (363)
T cd08279 185 TVAVIGCGGVGLNAIQGARIAGASRIIAVDP 215 (363)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 688999999999999988777776 766643
No 449
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=47.37 E-value=1.5e+02 Score=27.85 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=25.4
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
+|.|+| .|.+|+.+++++...+.+++++..
T Consensus 145 ~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~ 175 (324)
T cd08244 145 VVLVTAAAGGLGSLLVQLAKAAGATVVGAAG 175 (324)
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 689999 799999999988887888877754
No 450
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=47.25 E-value=39 Score=34.76 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=26.1
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC-cEEEEeCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT-PVVGINDP 34 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~-~ivaInd~ 34 (364)
.||.|+|+|-+|+.+++.|.++++ +|.-.|..
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt 214 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRT 214 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 479999999999999999988865 46556653
No 451
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=47.24 E-value=40 Score=32.58 Aligned_cols=118 Identities=15% Similarity=0.223 Sum_probs=59.3
Q ss_pred ceEEEEccChHHHHHHHHHhcC--------CCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECC-EEEE
Q psy8544 3 YKIGINGFGRIGRLVLREALHR--------NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNG-KKIA 73 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~--------~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~g-k~I~ 73 (364)
-+|.|.|-|=||--++++|... |++=|.|..+ -+.+-.++ ++.|+-+-.+-. +.-..||= -++.
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~---NRQi~A~~---~~iGk~Kv~vm~-eri~~InP~c~V~ 103 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNT---NRQIHALL---GDIGKPKVEVMK-ERIKQINPECEVT 103 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEeccccccccc---chhhHhhh---hhcccHHHHHHH-HHHHhhCCCceEe
Confidence 3799999999999999999741 5444444443 22333455 234554322111 11111221 0111
Q ss_pred E---E-ecCCCCCCCCcCCCccEEEeecCCCCCHhhHHHHHhCCCCEEEEeCCCCC--CCeE
Q psy8544 74 V---F-QKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSKD--APMF 129 (364)
Q Consensus 74 v---~-~~~~p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVIIsaps~d--~p~v 129 (364)
. | .+.+.+++-. .+.|||+||......+-.+-.+...-...||-|..++. +|+-
T Consensus 104 ~~~~f~t~en~~~~~~--~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k~DPTr 163 (263)
T COG1179 104 AINDFITEENLEDLLS--KGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLDPTR 163 (263)
T ss_pred ehHhhhCHhHHHHHhc--CCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccCCCCCce
Confidence 1 1 1122233322 37999999998887764444433322224444444432 5643
No 452
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=47.02 E-value=27 Score=31.69 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=26.7
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.+|.|.| .|.||+.+++.|.+++..|+.+..
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r 38 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDI 38 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 4799999 899999999999988778877754
No 453
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=46.83 E-value=1.7e+02 Score=29.07 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=23.9
Q ss_pred eEEEEccChHHHHHHHHHhcCCC-cEEEEe
Q psy8544 4 KIGINGFGRIGRLVLREALHRNT-PVVGIN 32 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~-~ivaIn 32 (364)
+|.|.|.|.+|..+++++...+. .++++.
T Consensus 206 ~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~ 235 (384)
T cd08265 206 YVVVYGAGPIGLAAIALAKAAGASKVIAFE 235 (384)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 68999999999999998888777 566653
No 454
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=46.77 E-value=28 Score=34.15 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=24.2
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC-cEEEEe
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT-PVVGIN 32 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~-~ivaIn 32 (364)
+||+|.|.|.+|..++.++..++. +|+-+.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvD 32 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLD 32 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEe
Confidence 599999999999999998887644 755443
No 455
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=46.65 E-value=21 Score=36.77 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=25.3
Q ss_pred CCceEEEEccChHHHHHHHHHhcCCCcEEEE
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHRNTPVVGI 31 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~~~~ivaI 31 (364)
|..+|||.|+|-||--++-+...++++++++
T Consensus 8 ~~~~I~ViGLGYVGLPlA~~fA~~G~~ViG~ 38 (436)
T COG0677 8 MSATIGVIGLGYVGLPLAAAFASAGFKVIGV 38 (436)
T ss_pred CceEEEEEccccccHHHHHHHHHcCCceEeE
Confidence 4579999999999988766666668998877
No 456
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=46.28 E-value=22 Score=33.43 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=25.0
Q ss_pred eEEEEc-cChHHHHHHHHHhcCC--CcEEEEeC
Q psy8544 4 KIGING-FGRIGRLVLREALHRN--TPVVGIND 33 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~--~~ivaInd 33 (364)
||.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 588999 8999999999988763 78887753
No 457
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=46.10 E-value=53 Score=31.78 Aligned_cols=94 Identities=15% Similarity=0.176 Sum_probs=51.9
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
+|.|+| .|.+|+.+++++...++.++++... +...++-++ |- ...+...+.. . . +....
T Consensus 157 ~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~~~----~~~~~~~~~----g~-~~v~~~~~~~---------~-~-~~l~~ 216 (339)
T cd08249 157 PVLIWGGSSSVGTLAIQLAKLAGYKVITTASP----KNFDLVKSL----GA-DAVFDYHDPD---------V-V-EDIRA 216 (339)
T ss_pred EEEEEcChhHHHHHHHHHHHHcCCeEEEEECc----ccHHHHHhc----CC-CEEEECCCch---------H-H-HHHHH
Confidence 689999 6999999999988888888776532 222233211 21 0011110000 0 0 00111
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhC--CCCEEEE
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKG--GAKKVII 119 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~a--GakkVII 119 (364)
+. ..++|+||+++|.-.....+..+++. |.+-+.+
T Consensus 217 ~~--~~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~ 253 (339)
T cd08249 217 AT--GGKLRYALDCISTPESAQLCAEALGRSGGGKLVSL 253 (339)
T ss_pred hc--CCCeeEEEEeeccchHHHHHHHHHhccCCCEEEEe
Confidence 11 13699999999863455566677776 6644444
No 458
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=45.93 E-value=93 Score=29.56 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=25.0
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
+|.|+| .|.+|+.+++++...+.+++++..
T Consensus 142 ~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~ 172 (329)
T cd08250 142 TVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS 172 (329)
T ss_pred EEEEEeCccHHHHHHHHHHHHcCCeEEEEeC
Confidence 689999 799999998888777888777654
No 459
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=45.75 E-value=30 Score=31.54 Aligned_cols=31 Identities=29% Similarity=0.091 Sum_probs=26.3
Q ss_pred CCceEEEEc-cChHHHHHHHHHhcCCCcEEEE
Q psy8544 1 MAYKIGING-FGRIGRLVLREALHRNTPVVGI 31 (364)
Q Consensus 1 m~irVaInG-~G~IGr~vlr~l~~~~~~ivaI 31 (364)
|+.+|.|.| .|-||+.+++.|.+++..++.+
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g~~v~~~ 32 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARGWSVGIN 32 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 666899999 8999999999998887777544
No 460
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=45.73 E-value=20 Score=37.74 Aligned_cols=128 Identities=13% Similarity=0.189 Sum_probs=69.9
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhh-cccccc-c---CCccee-ecCCeEEECCEEEEEEe
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLK-YDSTHG-R---FKGDVK-TEGNNIVVNGKKIAVFQ 76 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~-ydS~~g-~---~~~~v~-~~~~~l~i~gk~I~v~~ 76 (364)
.+||++|+|.+|+.+.+-|.+++++|+.-|. +++...-+.+ .... | . ...+++ ... .+.--+..|.+.
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NR---t~~k~~~l~~~~~~~-Ga~~~~~a~s~~e~v~-~l~~~dvIi~~v- 80 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNR---TTSKVDETVERAKKE-GNLPLYGFKDPEDFVL-SIQKPRSVIILV- 80 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEECC---CHHHHHHHHHhhhhc-CCcccccCCCHHHHHh-cCCCCCEEEEEC-
Confidence 5899999999999999999988999876664 3444433332 0100 1 0 001111 100 000001111121
Q ss_pred cCCCCC--------CCCcCCCccEEEeecCCC--CCHhhHHHHHhCCCCEEEEeCCCC-------CCCeEEcccCccccC
Q psy8544 77 KMKPEE--------IPWSQTGAEYIVESTGVF--KTKDTASAHLKGGAKKVIITAPSK-------DAPMFVCGVNLDKYD 139 (364)
Q Consensus 77 ~~~p~~--------~~w~~~gvDiV~estG~f--~s~e~a~~hl~aGakkVIIsaps~-------d~p~vV~gVN~~~~~ 139 (364)
.+.+. ++--. .=|+++|++-.. .+++.++...+.|+ -.+++|-. .-|++++|=+.+.|+
T Consensus 81 -~~~~aV~~Vi~gl~~~l~-~G~iiID~sT~~~~~t~~~~~~l~~~Gi--~fldapVSGG~~gA~~G~~im~GG~~~a~~ 156 (493)
T PLN02350 81 -KAGAPVDQTIKALSEYME-PGDCIIDGGNEWYENTERRIKEAAEKGL--LYLGMGVSGGEEGARNGPSLMPGGSFEAYK 156 (493)
T ss_pred -CCcHHHHHHHHHHHhhcC-CCCEEEECCCCCHHHHHHHHHHHHHcCC--eEEeCCCcCCHHHhcCCCeEEecCCHHHHH
Confidence 22111 11111 237999997553 44555556666787 46777732 356888898888776
Q ss_pred C
Q psy8544 140 P 140 (364)
Q Consensus 140 ~ 140 (364)
.
T Consensus 157 ~ 157 (493)
T PLN02350 157 N 157 (493)
T ss_pred H
Confidence 4
No 461
>PRK12827 short chain dehydrogenase; Provisional
Probab=45.51 E-value=32 Score=31.07 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=26.6
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.++-|.| .|.||+.+++.|.+++.+++.+..
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADGADVIVLDI 38 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEcC
Confidence 6899999 899999999999988778776643
No 462
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=45.47 E-value=40 Score=26.66 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=26.2
Q ss_pred EEEEeccCCCHHHHHH-HHHHccCCCCCccccccCCc
Q psy8544 243 LTVRLCCDVTYDEIKA-KVKAASQGPMKGILGYTEDE 278 (364)
Q Consensus 243 l~~~l~k~~s~eei~~-~l~~a~~~~lkgil~~~e~~ 278 (364)
++++..+.++..+|++ ++++|..-||-+.|.=.++.
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~~~PL~~~L~~~~~Y 38 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAKKYPLFSLLKDPSSY 38 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGGGSTTCCCS--GGGE
T ss_pred eEEEccCcCcHHHHHHHHHHHHHhCChHHHhCCCCcE
Confidence 4567788999999998 78999888988888644333
No 463
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=45.35 E-value=1.6e+02 Score=28.28 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=23.4
Q ss_pred eEEEEccChHHHHHHHHHhcCC-CcEEEEe
Q psy8544 4 KIGINGFGRIGRLVLREALHRN-TPVVGIN 32 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~-~~ivaIn 32 (364)
+|.|+|.|.+|+.+++++...+ ..++++.
T Consensus 169 ~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~ 198 (345)
T cd08286 169 TVAIVGAGPVGLAALLTAQLYSPSKIIMVD 198 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Confidence 6889999999999988887776 6776653
No 464
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=45.15 E-value=1.2e+02 Score=30.07 Aligned_cols=30 Identities=10% Similarity=0.277 Sum_probs=24.8
Q ss_pred eEEEEccChHHHHHHHHHhcCCC-cEEEEeC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNT-PVVGIND 33 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~-~ivaInd 33 (364)
+|.|.|.|.||..+++++...+. .|+++..
T Consensus 193 ~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~ 223 (373)
T cd08299 193 TCAVFGLGGVGLSAIMGCKAAGASRIIAVDI 223 (373)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 68899999999999998887787 6776643
No 465
>PF07683 CobW_C: Cobalamin synthesis protein cobW C-terminal domain; InterPro: IPR011629 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [].; PDB: 1NIJ_A.
Probab=45.14 E-value=32 Score=26.91 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=34.1
Q ss_pred EEEEEEeccCCCHHHHHHHHHHccCC--CCCccccccCC-ceEeecCCCCCce
Q psy8544 241 VDLTVRLCCDVTYDEIKAKVKAASQG--PMKGILGYTED-EVVSSDFNGEVCS 290 (364)
Q Consensus 241 ~dl~~~l~k~~s~eei~~~l~~a~~~--~lkgil~~~e~-~~VS~df~~~~~s 290 (364)
.+++++.+++.+.+.+.+.+.+.+.+ ..||++.+.++ ...-.+..++.++
T Consensus 2 ~s~~~~~~~p~~~~~l~~~l~~~~~~vlR~KG~v~~~~~~~~~~~q~v~~~~~ 54 (94)
T PF07683_consen 2 SSVTFEFDRPFDPERLEAWLQELPGDVLRAKGIVWVADGPRRLVFQGVGGRYD 54 (94)
T ss_dssp EEEEEEESS-B-HHHHHHHHHHTTTTEEEEEEEE-BTT-SEEEEEEEETTEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHhCCCCEEEEEEEEEeCCcCeEEEEEeeCCEEE
Confidence 46889999999999999999995544 57999988766 3444555555444
No 466
>PRK12320 hypothetical protein; Provisional
Probab=45.01 E-value=27 Score=38.46 Aligned_cols=31 Identities=29% Similarity=0.465 Sum_probs=27.4
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
|||.|.| +|.||+.+++.|.+++.+|+++..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr 32 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQ 32 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC
Confidence 3899999 899999999999988888887764
No 467
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=44.93 E-value=67 Score=30.03 Aligned_cols=87 Identities=18% Similarity=0.228 Sum_probs=49.8
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
+|.|.| .|.+|+.+++++..++..++++... .+..-++.++.. +.+ +.... .+. ....
T Consensus 145 ~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~-------------~~~-~~~~~-~~~--~~i~- 203 (320)
T cd08243 145 TLLIRGGTSSVGLAALKLAKALGATVTATTRS---PERAALLKELGA-------------DEV-VIDDG-AIA--EQLR- 203 (320)
T ss_pred EEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCC-------------cEE-EecCc-cHH--HHHH-
Confidence 688999 6999999999988888888777543 444333332210 111 11100 000 0001
Q ss_pred CCCcCCCccEEEeecCCCCCHhhHHHHHhCCC
Q psy8544 83 IPWSQTGAEYIVESTGVFKTKDTASAHLKGGA 114 (364)
Q Consensus 83 ~~w~~~gvDiV~estG~f~s~e~a~~hl~aGa 114 (364)
.+ ..++|++++|+|.. ..+.+..++..+.
T Consensus 204 -~~-~~~~d~vl~~~~~~-~~~~~~~~l~~~g 232 (320)
T cd08243 204 -AA-PGGFDKVLELVGTA-TLKDSLRHLRPGG 232 (320)
T ss_pred -Hh-CCCceEEEECCChH-HHHHHHHHhccCC
Confidence 12 24799999999864 3445556676655
No 468
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=44.67 E-value=1.5e+02 Score=27.36 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=25.0
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
+|.|+| .|.+|+.+++++...+..++++..
T Consensus 139 ~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~ 169 (320)
T cd05286 139 TVLVHAAAGGVGLLLTQWAKALGATVIGTVS 169 (320)
T ss_pred EEEEEcCCchHHHHHHHHHHHcCCEEEEEcC
Confidence 688999 799999999888777888877654
No 469
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.51 E-value=1e+02 Score=31.90 Aligned_cols=29 Identities=34% Similarity=0.557 Sum_probs=23.8
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
-||+|.|+|+-|+.++|.|.. +.+++ +.|
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~-v~D 35 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQN-KYDVI-VYD 35 (454)
T ss_pred CEEEEEeecHHHHHHHHHHhC-CCEEE-EEC
Confidence 489999999999999999984 76654 455
No 470
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=44.18 E-value=28 Score=32.83 Aligned_cols=30 Identities=33% Similarity=0.506 Sum_probs=25.4
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
||-|.| +|.||+.+++.|.+++.+|+.+..
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~ 31 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDN 31 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeC
Confidence 578999 999999999999888778776643
No 471
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=44.16 E-value=82 Score=29.85 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=25.3
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
+|.|+| .|.+|+.+++++...+..++++.+
T Consensus 148 ~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~ 178 (323)
T TIGR02823 148 PVLVTGATGGVGSLAVAILSKLGYEVVASTG 178 (323)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCeEEEEeC
Confidence 789999 599999999988888888776654
No 472
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=43.76 E-value=52 Score=31.52 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=26.7
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.+|.|-| +|.||+.+++.|.+++.+|+++.+
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r 37 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRGYTVKATVR 37 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 5899999 999999999999988888876544
No 473
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=43.49 E-value=35 Score=30.02 Aligned_cols=31 Identities=35% Similarity=0.380 Sum_probs=26.8
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeCC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGINDP 34 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd~ 34 (364)
++.|.|.|.-|+.+++.|.++++++++.=|.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfid~ 31 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDSGWEIVGFLDD 31 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 5789999999999999998778999887663
No 474
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=43.41 E-value=29 Score=33.75 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=26.6
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
+|-|-| +|.||+.+++.|.+++.+|+++..
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r 32 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKGYEVHGLIR 32 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCCCEEEEEec
Confidence 788999 899999999999988888888754
No 475
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=43.33 E-value=1.2e+02 Score=31.16 Aligned_cols=30 Identities=37% Similarity=0.481 Sum_probs=24.2
Q ss_pred eEEEEccChHHHH-HHHHHhcCCCcEEEEeCC
Q psy8544 4 KIGINGFGRIGRL-VLREALHRNTPVVGINDP 34 (364)
Q Consensus 4 rVaInG~G~IGr~-vlr~l~~~~~~ivaInd~ 34 (364)
++-++|.|.+|.. ++|.|.+++.+|.+ .|.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~-~D~ 31 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSG-SDI 31 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEE-ECC
Confidence 4778999999998 99999888888654 553
No 476
>PRK15076 alpha-galactosidase; Provisional
Probab=43.28 E-value=28 Score=36.00 Aligned_cols=13 Identities=31% Similarity=0.125 Sum_probs=11.7
Q ss_pred ceEEEEccChHHH
Q psy8544 3 YKIGINGFGRIGR 15 (364)
Q Consensus 3 irVaInG~G~IGr 15 (364)
+||+|+|.|.+|-
T Consensus 2 ~KIaIIGaGsvg~ 14 (431)
T PRK15076 2 PKITFIGAGSTVF 14 (431)
T ss_pred cEEEEECCCHHHh
Confidence 6999999999983
No 477
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=43.24 E-value=2e+02 Score=27.83 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=22.5
Q ss_pred eEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 4 KIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
+|.|.|.|.+|+.+++++...+..++.+.+
T Consensus 177 ~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~ 206 (350)
T cd08256 177 VVVLAGAGPLGLGMIGAARLKNPKKLIVLD 206 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEEc
Confidence 578888999999999988777765443333
No 478
>PRK06153 hypothetical protein; Provisional
Probab=43.06 E-value=14 Score=37.86 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=22.7
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC-cEEEE
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT-PVVGI 31 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~-~ivaI 31 (364)
.||+|+|.|-+|-.++..|...++ +|+-|
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LV 206 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLF 206 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEE
Confidence 489999999999999999986543 44333
No 479
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=43.01 E-value=1.3e+02 Score=28.29 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=28.6
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHh
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYML 45 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll 45 (364)
+|.|+| .|.+|+.+++++...+..++.+.. +.+...++.
T Consensus 143 ~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~ 182 (334)
T PTZ00354 143 SVLIHAGASGVGTAAAQLAEKYGAATIITTS---SEEKVDFCK 182 (334)
T ss_pred EEEEEcCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHH
Confidence 689999 799999999998887777655433 355544443
No 480
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=42.97 E-value=28 Score=28.99 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=29.4
Q ss_pred CCceEEEEccChHHHHHHHHHhcCCCcEEEEeCC
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHRNTPVVGINDP 34 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~~~~ivaInd~ 34 (364)
|--||-|.|-|.|+.+++|.+.+.+++.|+||.-
T Consensus 1 ~ikkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~ 34 (110)
T PF00289_consen 1 MIKKVLIANRGEIAVRIIRALRELGIETVAVNSN 34 (110)
T ss_dssp SSSEEEESS-HHHHHHHHHHHHHTTSEEEEEEEG
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCcceeccCc
Confidence 4458999999999999999999999999999863
No 481
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=42.78 E-value=35 Score=34.14 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=26.9
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.+|+|+|-|..||.+++++.+.+++++.+..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG~~v~~~d~ 33 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLGYKVIVLDP 33 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEeC
Confidence 4899999999999999988888999877743
No 482
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=42.41 E-value=36 Score=36.10 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=23.3
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEe
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
-||||+|.|.-|-..++.|.+.+++++..-
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE 31 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFE 31 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEe
Confidence 489999999999999999998899887664
No 483
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=42.24 E-value=14 Score=37.51 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=20.7
Q ss_pred ceEEEEccChHHHHHHHHHhcCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNT 26 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~ 26 (364)
.||.|+|.|-+|..++..|...++
T Consensus 43 ~~VlviG~GGlGs~va~~La~~Gv 66 (392)
T PRK07878 43 ARVLVIGAGGLGSPTLLYLAAAGV 66 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCC
Confidence 589999999999999999876544
No 484
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=41.95 E-value=32 Score=37.24 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=27.8
Q ss_pred ceEEEEc-cChHHHHHHHHHhcC-CCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHR-NTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~-~~~ivaInd 33 (364)
+||.|.| +|-||+.+++.|.++ +.+|+++..
T Consensus 316 ~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r 348 (660)
T PRK08125 316 TRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI 348 (660)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence 6899999 899999999999986 789998865
No 485
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.33 E-value=36 Score=30.88 Aligned_cols=31 Identities=19% Similarity=0.134 Sum_probs=26.6
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.+|.|.| +|.||+.+++.|.+++.+|+.+..
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r 37 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDR 37 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 4789999 899999999999988778777754
No 486
>PRK06924 short chain dehydrogenase; Provisional
Probab=41.23 E-value=39 Score=30.84 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=25.8
Q ss_pred eEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 4 KIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 4 rVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
++-|.| .|-||+.+++.|.+++.+|+.+..
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r 33 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISR 33 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeC
Confidence 789999 899999999999988778776654
No 487
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=41.20 E-value=1.3e+02 Score=28.72 Aligned_cols=28 Identities=14% Similarity=0.317 Sum_probs=22.8
Q ss_pred eEEEEccChHHHHHHHHHhcCCC-cEEEE
Q psy8544 4 KIGINGFGRIGRLVLREALHRNT-PVVGI 31 (364)
Q Consensus 4 rVaInG~G~IGr~vlr~l~~~~~-~ivaI 31 (364)
+|.|.|.|.+|+.+++++..++. .++++
T Consensus 170 ~VlI~g~g~vg~~~iqlak~~g~~~v~~~ 198 (347)
T cd05278 170 TVAVIGAGPVGLCAVAGARLLGAARIIAV 198 (347)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 68888899999999998877665 56666
No 488
>PRK08163 salicylate hydroxylase; Provisional
Probab=41.14 E-value=38 Score=33.46 Aligned_cols=31 Identities=16% Similarity=-0.008 Sum_probs=25.5
Q ss_pred CceEEEEccChHHHHHHHHHhcCCCcEEEEe
Q psy8544 2 AYKIGINGFGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
+.+|.|+|-|..|-.++.+|..+++++.-+-
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~E 34 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLE 34 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEe
Confidence 4699999999999998888877777766553
No 489
>PRK07024 short chain dehydrogenase; Provisional
Probab=41.12 E-value=42 Score=30.96 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=26.8
Q ss_pred CCceEEEEc-cChHHHHHHHHHhcCCCcEEEEe
Q psy8544 1 MAYKIGING-FGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 1 m~irVaInG-~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
|+.+|-|.| .|-||+.+++.|.+++..|+.+.
T Consensus 1 ~~~~vlItGas~gIG~~la~~l~~~G~~v~~~~ 33 (257)
T PRK07024 1 MPLKVFITGASSGIGQALAREYARQGATLGLVA 33 (257)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 556889999 99999999999988877776654
No 490
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=41.09 E-value=14 Score=38.56 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.0
Q ss_pred CceEEEEcc-ChHHHHHHHHHhcC
Q psy8544 2 AYKIGINGF-GRIGRLVLREALHR 24 (364)
Q Consensus 2 ~irVaInG~-G~IGr~vlr~l~~~ 24 (364)
++||+|.|. |.||-.++-.|..+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 479999997 99999999888755
No 491
>PRK05586 biotin carboxylase; Validated
Probab=41.08 E-value=37 Score=34.88 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=28.5
Q ss_pred CCceEEEEccChHHHHHHHHHhcCCCcEEEEe
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
|.-||+|.|-|.+|+.+++++.+.++++|++-
T Consensus 1 ~~kkvli~g~G~~~~~~~~aa~~lG~~~v~v~ 32 (447)
T PRK05586 1 MFKKILIANRGEIAVRIIRACREMGIETVAVY 32 (447)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCcEEEEc
Confidence 44599999999999999999988899988884
No 492
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.88 E-value=41 Score=30.35 Aligned_cols=29 Identities=24% Similarity=0.209 Sum_probs=25.2
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEE
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGI 31 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaI 31 (364)
.++-|.| +|.||+.+++.|.+++.+++.+
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~~~ 35 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVVIA 35 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 4789999 8999999999998888888766
No 493
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=40.63 E-value=37 Score=32.29 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=24.0
Q ss_pred EEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 5 IGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 5 VaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
|-|.| +|-||+.+++.|.+++.+++++-+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~ 31 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVD 31 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEec
Confidence 56889 899999999999988776666654
No 494
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.62 E-value=41 Score=30.18 Aligned_cols=31 Identities=16% Similarity=0.085 Sum_probs=25.0
Q ss_pred ceEEEEc-cChHHHHHHHHHhcCCCcEEEEeC
Q psy8544 3 YKIGING-FGRIGRLVLREALHRNTPVVGIND 33 (364)
Q Consensus 3 irVaInG-~G~IGr~vlr~l~~~~~~ivaInd 33 (364)
.+|-|.| .|.||+.+++.|.+++..++.+..
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~ 38 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAGADVVVHYR 38 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 4799999 899999999999888667654433
No 495
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=40.57 E-value=38 Score=35.19 Aligned_cols=32 Identities=22% Similarity=0.246 Sum_probs=26.8
Q ss_pred CCceEEEEccChHHHHHHHHHhcCCCcEEEEe
Q psy8544 1 MAYKIGINGFGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 1 m~irVaInG~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
|+.+|.|+|-|.+|...+..|..++++++-+.
T Consensus 1 ~~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE 32 (436)
T PRK05335 1 MMKPVNVIGAGLAGSEAAWQLAKRGVPVELYE 32 (436)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEE
Confidence 56789999999999999999988877766554
No 496
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.54 E-value=35 Score=34.80 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=24.0
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEE
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGI 31 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaI 31 (364)
|||.|.|+|+.|+.++|.|. ++.+|+..
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~ 28 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIF 28 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEE
Confidence 48999999999999999999 87776443
No 497
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=40.36 E-value=39 Score=33.72 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=25.7
Q ss_pred CceEEEEccChHHHHHHHHHhcCCCcEEEEe
Q psy8544 2 AYKIGINGFGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
+.+|.|+|-|.+|...++.|.+++.+|+-+.
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle 31 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFD 31 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence 1499999999999999999988777776664
No 498
>PRK07236 hypothetical protein; Provisional
Probab=39.99 E-value=42 Score=33.31 Aligned_cols=31 Identities=10% Similarity=-0.173 Sum_probs=26.0
Q ss_pred CceEEEEccChHHHHHHHHHhcCCCcEEEEe
Q psy8544 2 AYKIGINGFGRIGRLVLREALHRNTPVVGIN 32 (364)
Q Consensus 2 ~irVaInG~G~IGr~vlr~l~~~~~~ivaIn 32 (364)
+.+|.|+|-|..|-.++.+|..++++++-+-
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E 36 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFE 36 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEe
Confidence 5799999999999999888887777766554
No 499
>PRK04148 hypothetical protein; Provisional
Probab=39.80 E-value=32 Score=29.95 Aligned_cols=96 Identities=20% Similarity=0.092 Sum_probs=53.6
Q ss_pred ceEEEEccChHHHHHHHHHhcCCCcEEEEeCCCCCHHHHHHHhhcccccccCCcceeecCCeEEECCEEEEEEecCCCCC
Q psy8544 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIVVNGKKIAVFQKMKPEE 82 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~~~~ivaInd~~~~~~~~a~ll~ydS~~g~~~~~v~~~~~~l~i~gk~I~v~~~~~p~~ 82 (364)
.||.++|.| -|..+.+.|.+.+.+|++|. . +++..-...+. +-..... -+| +| +
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaID-i--~~~aV~~a~~~--------------~~~~v~d----Dlf---~p-~ 71 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVID-I--NEKAVEKAKKL--------------GLNAFVD----DLF---NP-N 71 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEE-C--CHHHHHHHHHh--------------CCeEEEC----cCC---CC-C
Confidence 479999999 78888888887799999984 3 45533222211 0011111 111 12 3
Q ss_pred CCCcCCCccEEEeec-CCCCCHhhHHHHHhCCCCEEEEeCCCCCC
Q psy8544 83 IPWSQTGAEYIVEST-GVFKTKDTASAHLKGGAKKVIITAPSKDA 126 (364)
Q Consensus 83 ~~w~~~gvDiV~est-G~f~s~e~a~~hl~aGakkVIIsaps~d~ 126 (364)
+.|- .++|++.++= +..+-..-.+.+.+-||.- +|..-+-|.
T Consensus 72 ~~~y-~~a~liysirpp~el~~~~~~la~~~~~~~-~i~~l~~e~ 114 (134)
T PRK04148 72 LEIY-KNAKLIYSIRPPRDLQPFILELAKKINVPL-IIKPLSGEE 114 (134)
T ss_pred HHHH-hcCCEEEEeCCCHHHHHHHHHHHHHcCCCE-EEEcCCCCC
Confidence 4443 3789888775 3333333444555677754 454444443
No 500
>PRK14851 hypothetical protein; Provisional
Probab=39.59 E-value=17 Score=39.94 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.3
Q ss_pred ceEEEEccChHHHHHHHHHhcC
Q psy8544 3 YKIGINGFGRIGRLVLREALHR 24 (364)
Q Consensus 3 irVaInG~G~IGr~vlr~l~~~ 24 (364)
-||+|+|.|-+|-.++..|...
T Consensus 44 ~~VlIvG~GGlGs~va~~Lar~ 65 (679)
T PRK14851 44 AKVAIPGMGGVGGVHLITMVRT 65 (679)
T ss_pred CeEEEECcCHHHHHHHHHHHHh
Confidence 5899999999999999988754
Done!