RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8544
(364 letters)
>gnl|CDD|177912 PLN02272, PLN02272, glyceraldehyde-3-phosphate dehydrogenase.
Length = 421
Score = 527 bits (1358), Expect = 0.0
Identities = 222/328 (67%), Positives = 266/328 (81%), Gaps = 2/328 (0%)
Query: 4 KIGINGFGRIGRLVLREALHRN-TPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKT-E 61
KIGINGFGRIGRLVLR A R+ VV +NDP + Y+AYM KYDSTHG FKG + +
Sbjct: 87 KIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVD 146
Query: 62 GNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITA 121
+ + +NGK+I V K P EIPW GAEY+VES+GVF T + ASAHLKGGAKKV+I+A
Sbjct: 147 DSTLEINGKQIKVTSKRDPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISA 206
Query: 122 PSKDAPMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVHAVTA 181
PS DAPMFV GVN Y P+ ++VSNASCTTNCLAPLAKV+H+ F ILEGLMTTVHA TA
Sbjct: 207 PSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTA 266
Query: 182 TQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPNVSVV 241
TQKTVD PS K WR GRGA+QNIIP+STGAAKAV KV+P+L GKLTGMAFRVP PNVSVV
Sbjct: 267 TQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVV 326
Query: 242 DLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIAL 301
DLT RL +Y+++KA +K AS+GP+KGILGYT+++VVS+DF G+ SS+FDAKAGI L
Sbjct: 327 DLTCRLEKSASYEDVKAAIKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGL 386
Query: 302 NKNFVKLVTWYDNEYGYSCRVLDLIQYM 329
+ +F+KLV+WYDNE+GYS RVLDLI++M
Sbjct: 387 SASFMKLVSWYDNEWGYSNRVLDLIEHM 414
>gnl|CDD|223135 COG0057, GapA, Glyceraldehyde-3-phosphate
dehydrogenase/erythrose-4-phosphate dehydrogenase
[Carbohydrate transport and metabolism].
Length = 335
Score = 491 bits (1267), Expect = e-176
Identities = 196/334 (58%), Positives = 236/334 (70%), Gaps = 6/334 (1%)
Query: 4 KIGINGFGRIGRLVLREALHRNTP--VVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTE 61
K+ INGFGRIGRLV R AL R+ VV IND DYLA++LKYDS HGRF G+V+ +
Sbjct: 3 KVAINGFGRIGRLVARAALERDGDIEVVAINDL-TDPDYLAHLLKYDSVHGRFDGEVEVK 61
Query: 62 GNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHL-KGGAKKVIIT 120
+ +VVNGK I V + P +PW+ G + +VE TG F ++ A HL GGAKKV+I+
Sbjct: 62 DDALVVNGKGIKVLAERDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLIS 121
Query: 121 APSKDA-PMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVHAV 179
AP KD V GVN + YD H++VSNASCTTNCLAP+AKV++D F I +GLMTTVHA
Sbjct: 122 APGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLAPVAKVLNDAFGIEKGLMTTVHAY 181
Query: 180 TATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPNVS 239
T QK VD P K R R A NIIP STGAAKAV V+P+L+GKLTGMA RVP PNVS
Sbjct: 182 TNDQKLVDGPHKD-LRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPTPNVS 240
Query: 240 VVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGI 299
VVDLTV L +VT +EI A +KAAS+ +KGILGYTED +VSSDFNG+ SS+FDA A I
Sbjct: 241 VVDLTVELEKEVTVEEINAALKAASEIGLKGILGYTEDPLVSSDFNGDPHSSIFDASATI 300
Query: 300 ALNKNFVKLVTWYDNEYGYSCRVLDLIQYMKSKD 333
L N VKLV WYDNE+GYS RV+DL+ +
Sbjct: 301 VLGGNLVKLVAWYDNEWGYSNRVVDLLAMVAKAL 334
>gnl|CDD|173322 PTZ00023, PTZ00023, glyceraldehyde-3-phosphate dehydrogenase;
Provisional.
Length = 337
Score = 476 bits (1227), Expect = e-170
Identities = 213/337 (63%), Positives = 253/337 (75%), Gaps = 4/337 (1%)
Query: 1 MAYKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVK 59
M K+GINGFGRIGRLV R AL R + VV INDP +++DY+ Y+LKYDS HG +V
Sbjct: 1 MVVKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVS 60
Query: 60 TEGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119
+++ KK+ VF + P IPW + G + + ESTGVF TK+ A AHLKGGAKKVI+
Sbjct: 61 VTDGFLMIGSKKVHVFFEKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIM 120
Query: 120 TAPSKD-APMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVHA 178
+AP KD P++V GVN +YD S +VSNASCTTNCLAPLAKV++D F I+EGLMTTVHA
Sbjct: 121 SAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCLAPLAKVVNDKFGIVEGLMTTVHA 180
Query: 179 VTATQKTVDAPSK--KMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVP 236
TA Q TVD PSK K WR GR A NIIPASTGAAKAV KVIP+L GKLTGMAFRVPVP
Sbjct: 181 STANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPVP 240
Query: 237 NVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAK 296
+VSVVDLT +L Y+EI A VK A++GP+KGILGYT+DEVVSSDF + SS+FD K
Sbjct: 241 DVSVVDLTCKLAKPAKYEEIVAAVKKAAEGPLKGILGYTDDEVVSSDFVHDKRSSIFDVK 300
Query: 297 AGIALNKNFVKLVTWYDNEYGYSCRVLDLIQYMKSKD 333
AGIALN FVKLV+WYDNE+GYS R+LDL Y+ K
Sbjct: 301 AGIALNDTFVKLVSWYDNEWGYSNRLLDLAHYITQKY 337
>gnl|CDD|233453 TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate dehydrogenase, type
I. This model represents glyceraldehyde-3-phosphate
dehydrogenase (GAPDH), the enzyme responsible for the
interconversion of 1,3-diphosphoglycerate and
glyceraldehyde-3-phosphate, a central step in glycolysis
and gluconeogenesis. Forms exist which utilize NAD (EC
1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In
some species, NAD- and NADP- utilizing forms exist,
generally being responsible for reactions in the
anabolic and catabolic directions respectively. Two PFAM
models cover the two functional domains of this protein;
pfam00044 represents the N-terminal NAD(P)-binding
domain and pfam02800 represents the C-terminal catalytic
domain. An additional form of gap gene is found in gamma
proteobacteria and is responsible for the conversion of
erythrose-4-phosphate (E4P) to 4-phospho-erythronate in
the biosynthesis of pyridoxine. This pathway of
pyridoxine biosynthesis appears to be limited, however,
to a relatively small number of bacterial species
although it is prevalent among the gamma-proteobacteria.
This enzyme is described by TIGR001532. These sequences
generally score between trusted and noise to this GAPDH
model due to the close evolutionary relationship. There
exists the possiblity that some forms of GAPDH may be
bifunctional and act on E4P in species which make
pyridoxine and via hydroxythreonine and lack a separate
E4PDH enzyme (for instance, the GAPDH from Bacillus
stearothermophilus has been shown to posess a limited
E4PD activity as well as a robust GAPDH activity). There
are a great number of sequences in the databases which
score between trusted and noise to this model, nearly
all of them due to fragmentary sequences. It seems that
study of this gene has been carried out in many species
utilizing PCR probes which exclude the extreme ends of
the consenses used to define this model. The noise level
is set relative not to E4PD, but the next closest
outliers, the class II GAPDH's (found in archaea,
TIGR01546) and aspartate semialdehyde dehydrogenase
(ASADH, TIGR01296) both of which have highest-scoring
hits around -225 to the prior model [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 326
Score = 470 bits (1212), Expect = e-167
Identities = 187/328 (57%), Positives = 233/328 (71%), Gaps = 9/328 (2%)
Query: 4 KIGINGFGRIGRLVLREALHRNTP---VVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKT 60
K+GINGFGRIGRLVLR L + VV IND ++YLAY+LKYDS HGRF+G+V
Sbjct: 1 KVGINGFGRIGRLVLRAILEKPGNDLEVVAINDL-TDLEYLAYLLKYDSVHGRFEGEVTA 59
Query: 61 EGNNIVVNGKK-IAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119
+ + +VVNGK+ I+VF + P ++PW G + ++E TG F+ K+ HL+ GAKKV+I
Sbjct: 60 DEDGLVVNGKEVISVFSERDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLI 119
Query: 120 TAPSK-DAPMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVHA 178
+APSK D V GVN D+YDPS +VSNASCTTNCLAPLAKV+ + F I+ GLMTTVH+
Sbjct: 120 SAPSKGDVKTIVYGVNHDEYDPSERIVSNASCTTNCLAPLAKVLDEAFGIVSGLMTTVHS 179
Query: 179 VTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPNV 238
T Q VD P K R R A NIIP STGAAKA+ KV+P+L GKLTGMA RVP PNV
Sbjct: 180 YTNDQNLVDGPHKD-LRRARAAALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTPNV 238
Query: 239 SVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAG 298
S+VDL V L DVT +E+ A +K A++G +KG+LGYTEDE+VSSDF G SS+ DA A
Sbjct: 239 SLVDLVVNLEKDVTVEEVNAALKEAAEGELKGVLGYTEDELVSSDFIGSPYSSIVDATAT 298
Query: 299 IA--LNKNFVKLVTWYDNEYGYSCRVLD 324
L + VK+V WYDNE+GYS RV+D
Sbjct: 299 KVTGLGDSLVKVVAWYDNEWGYSNRVVD 326
>gnl|CDD|185323 PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase A;
Provisional.
Length = 331
Score = 426 bits (1097), Expect = e-150
Identities = 223/331 (67%), Positives = 263/331 (79%), Gaps = 4/331 (1%)
Query: 1 MAYKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVK 59
M K+GINGFGRIGR+V R A R + +V IND L DY+AYMLKYDSTHGRF G V+
Sbjct: 1 MTIKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVE 59
Query: 60 TEGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119
+ +++VNGKKI V + P + W + G + + E+TG+F T +TA H+ GAKKV++
Sbjct: 60 VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119
Query: 120 TAPSKD-APMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVHA 178
T PSKD PMFV G N DKY +VSNASCTTNCLAPLAKVI+DNF I+EGLMTTVHA
Sbjct: 120 TGPSKDNTPMFVKGANFDKY-AGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 178
Query: 179 VTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPNV 238
TATQKTVD PS K WR GRGA+QNIIP+STGAAKAV KV+P+L GKLTGMAFRVP PNV
Sbjct: 179 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 238
Query: 239 SVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAG 298
SVVDLTVRL TY++IKA VKAA++G MKG+LGYTED+VVS+DFNGEVC+SVFDAKAG
Sbjct: 239 SVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAG 298
Query: 299 IALNKNFVKLVTWYDNEYGYSCRVLDLIQYM 329
IALN NFVKLV+WYDNE GYS +VLDLI ++
Sbjct: 299 IALNDNFVKLVSWYDNETGYSNKVLDLIAHI 329
>gnl|CDD|165999 PLN02358, PLN02358, glyceraldehyde-3-phosphate dehydrogenase.
Length = 338
Score = 416 bits (1071), Expect = e-146
Identities = 212/329 (64%), Positives = 261/329 (79%), Gaps = 3/329 (0%)
Query: 4 KIGINGFGRIGRLVLREALHRN-TPVVGINDPHLSVDYLAYMLKYDSTHGRFK-GDVKTE 61
+IGINGFGRIGRLV R L R+ +V +NDP ++ +Y+ YM KYDS HG++K ++K +
Sbjct: 7 RIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVK 66
Query: 62 GNNIVVNGKK-IAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIIT 120
+ ++ G+K + VF PE+IPW + GA+++VESTGVF KD A+AHLKGGAKKV+I+
Sbjct: 67 DDKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVIS 126
Query: 121 APSKDAPMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVHAVT 180
APSKDAPMFV GVN +Y +VSNASCTTNCLAPLAKVI+D F I+EGLMTTVH++T
Sbjct: 127 APSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSIT 186
Query: 181 ATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPNVSV 240
ATQKTVD PS K WR GR A+ NIIP+STGAAKAV KV+P L GKLTGM+FRVP +VSV
Sbjct: 187 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDVSV 246
Query: 241 VDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIA 300
VDLTVRL TYDEIK +K S+G +KGILGYTED+VVS+DF G+ SS+FDAKAGIA
Sbjct: 247 VDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIA 306
Query: 301 LNKNFVKLVTWYDNEYGYSCRVLDLIQYM 329
L+ FVKLV+WYDNE+GYS RV+DLI +M
Sbjct: 307 LSDKFVKLVSWYDNEWGYSSRVVDLIVHM 335
>gnl|CDD|236079 PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase;
Validated.
Length = 343
Score = 392 bits (1008), Expect = e-136
Identities = 160/335 (47%), Positives = 226/335 (67%), Gaps = 5/335 (1%)
Query: 1 MAYKIGINGFGRIGRLVLREA-LHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVK 59
M K+ INGFGRIGR+V R+A +V IN + + LA+++KYD+ HG+F G V+
Sbjct: 1 MKTKVAINGFGRIGRMVFRKAIKESAFEIVAINASY-PSETLAHLIKYDTVHGKFDGTVE 59
Query: 60 TEGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119
++++V+GKKI + P+E+PW+ G + ++E+TG F +K+ A H++ GAKKVI+
Sbjct: 60 AFEDHLLVDGKKIRLLNNRDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVIL 119
Query: 120 TAPSKDAPM-FVCGVNLDKYDP-SHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVH 177
TAP K+ + V GVN D+ D H+++SNASCTTNCLAP+ KV+ + F I GLMTTVH
Sbjct: 120 TAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCLAPVVKVLDEQFGIENGLMTTVH 179
Query: 178 AVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPN 237
A T QK +D P K + R R Q+IIP +TGAAKA+AKV+P L GKL GMA RVP PN
Sbjct: 180 AYTNDQKNIDNPHKDL-RRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTPN 238
Query: 238 VSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKA 297
VS+VDL V + DVT +EI K A+ G +KGIL ++E+ +VS DFN S++ D +
Sbjct: 239 VSLVDLVVDVKRDVTVEEINEAFKTAANGALKGILEFSEEPLVSIDFNTNTHSAIIDGLS 298
Query: 298 GIALNKNFVKLVTWYDNEYGYSCRVLDLIQYMKSK 332
+ + VK++ WYDNE+GYSCRV+DL+ + +
Sbjct: 299 TMVMGDRKVKVLAWYDNEWGYSCRVVDLVTLVADE 333
>gnl|CDD|185614 PTZ00434, PTZ00434, cytosolic glyceraldehyde 3-phosphate
dehydrogenase; Provisional.
Length = 361
Score = 357 bits (917), Expect = e-122
Identities = 184/357 (51%), Positives = 237/357 (66%), Gaps = 21/357 (5%)
Query: 1 MAYKIGINGFGRIGRLVLR-----EALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFK 55
K+GINGFGRIGR+V + + VV + D + +Y AY +KYD+ HGR K
Sbjct: 2 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPK 61
Query: 56 GDVKT--------EGNNIVVNGKKI-AVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTA 106
V+T + +VVNG +I V + P ++PW + G +Y++ESTG+F K A
Sbjct: 62 YTVETTKSSPSVKTDDVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAA 121
Query: 107 SAHLKGGAKKVIITAP-SKDAPMFVCGVNLDKYDP-SHSVVSNASCTTNCLAPLAKVI-H 163
HLKGGAKKV+I+AP S A V GVN +Y P H VVSNASCTTNCLAP+ V+
Sbjct: 122 EGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEHHVVSNASCTTNCLAPIVHVLTK 181
Query: 164 DNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLE 223
+ F I GLMTT+H+ TATQKTVD S K WR GR A NIIP++TGAAKAV VIP +
Sbjct: 182 EGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTK 241
Query: 224 GKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSD 283
GKLTGM+FRVP P+VSVVDLT R D + EI A +K ASQ MKGILG+T+DE+VS+D
Sbjct: 242 GKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIKRASQTYMKGILGFTDDELVSAD 301
Query: 284 FNGEVCSSVFDAKAGIALN----KNFVKLVTWYDNEYGYSCRVLDLIQYMKSKDTGS 336
F + SS++D+KA + N + F K+V+WYDNE+GYS RV+DL++YM +KD S
Sbjct: 302 FINDNRSSIYDSKATLQNNLPGERRFFKIVSWYDNEWGYSHRVVDLVRYMAAKDAAS 358
>gnl|CDD|180962 PRK07403, PRK07403, glyceraldehyde-3-phosphate dehydrogenase;
Reviewed.
Length = 337
Score = 338 bits (868), Expect = e-115
Identities = 167/338 (49%), Positives = 224/338 (66%), Gaps = 14/338 (4%)
Query: 4 KIGINGFGRIGRLVLREALHR---NTPVVGIN---DPHLSVDYLAYMLKYDSTHGRFKGD 57
++ INGFGRIGR LR L R +V IN DP + A++LKYDS G+ D
Sbjct: 3 RVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTN----AHLLKYDSMLGKLNAD 58
Query: 58 VKTEGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKV 117
+ + N+I VNGK I P +PW + G + I+ESTGVF TK+ AS H++ GAKKV
Sbjct: 59 ISADENSITVNGKTIKCVSDRNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKV 118
Query: 118 IITAPSK--DAPMFVCGVNLDKYD-PSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMT 174
+ITAP K D +V GVN +YD H+++SNASCTTNCLAP+AKV+HDNF I++G MT
Sbjct: 119 LITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNCLAPIAKVLHDNFGIIKGTMT 178
Query: 175 TVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVP 234
T H+ T Q+ +DA S + R R A NI+P STGAAKAVA VIP+L+GKL G+A RVP
Sbjct: 179 TTHSYTGDQRILDA-SHRDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRVP 237
Query: 235 VPNVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFD 294
PNVSVVDL V++ +++ +K AS+GP+KGIL Y++ +VSSD+ G SS+ D
Sbjct: 238 TPNVSVVDLVVQVEKRTITEQVNEVLKDASEGPLKGILEYSDLPLVSSDYRGTDASSIVD 297
Query: 295 AKAGIALNKNFVKLVTWYDNEYGYSCRVLDLIQYMKSK 332
A + + + VK++ WYDNE+GYS RV+DL + + K
Sbjct: 298 ASLTMVMGGDMVKVIAWYDNEWGYSQRVVDLAELVARK 335
>gnl|CDD|215572 PLN03096, PLN03096, glyceraldehyde-3-phosphate dehydrogenase A;
Provisional.
Length = 395
Score = 311 bits (799), Expect = e-104
Identities = 159/335 (47%), Positives = 214/335 (63%), Gaps = 9/335 (2%)
Query: 4 KIGINGFGRIGRLVLREALH--RNTP--VVGINDPHLSVDYLAYMLKYDSTHGRFKGDVK 59
K+ INGFGRIGR LR H +++P VV IND V +++LKYDST G F DVK
Sbjct: 62 KVAINGFGRIGRNFLR-CWHGRKDSPLDVVAINDTG-GVKQASHLLKYDSTLGTFDADVK 119
Query: 60 TEGNN-IVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVI 118
G++ I V+GK I V P +PW + G + ++E TGVF ++ A H++ GAKKV+
Sbjct: 120 PVGDDAISVDGKVIKVVSDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 179
Query: 119 ITAPSK-DAPMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVH 177
ITAP K D P +V GVN D Y S ++SNASCTTNCLAP KV+ F I++G MTT H
Sbjct: 180 ITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTH 239
Query: 178 AVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPN 237
+ T Q+ +DA S + R R A NI+P STGAAKAVA V+P+L+GKL G+A RVP PN
Sbjct: 240 SYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPN 298
Query: 238 VSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKA 297
VSVVDL V++ +E+ A + A++ +KGIL ++ +VS DF SS D+
Sbjct: 299 VSVVDLVVQVEKKTFAEEVNAAFRDAAEKELKGILAVCDEPLVSVDFRCSDVSSTIDSSL 358
Query: 298 GIALNKNFVKLVTWYDNEYGYSCRVLDLIQYMKSK 332
+ + + VK+V WYDNE+GYS RV+DL + +K
Sbjct: 359 TMVMGDDMVKVVAWYDNEWGYSQRVVDLADIVANK 393
>gnl|CDD|169599 PRK08955, PRK08955, glyceraldehyde-3-phosphate dehydrogenase;
Validated.
Length = 334
Score = 305 bits (783), Expect = e-102
Identities = 147/330 (44%), Positives = 207/330 (62%), Gaps = 7/330 (2%)
Query: 1 MAYKIGINGFGRIGRLVLREALH-RNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVK 59
M K+GINGFGRIGRL LR A V INDP LA++L++DS HGR+ +V
Sbjct: 1 MTIKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVT 60
Query: 60 TEGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119
EG+ IV+NGK+I Q + WS G + ++E++GV KTK A+L G K+V++
Sbjct: 61 AEGDAIVINGKRIRTTQNKAIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVV 118
Query: 120 TAPSKDAPMF--VCGVNLDKYDPS-HSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTV 176
TAP K+ + V GVN +DP+ H +V+ ASCTTNCLAP+ KVIH+ I G MTT+
Sbjct: 119 TAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCLAPVVKVIHEKLGIKHGSMTTI 178
Query: 177 HAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVP 236
H +T TQ +DAP K + R R ++IP +TG+A A+ ++ P+L+GKL G A RVP+
Sbjct: 179 HDLTNTQTILDAPHKDL-RRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVPLA 237
Query: 237 NVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAK 296
N S+ D + D T +E+ A +K A++G +KGILGY E +VS D+ + SS+ DA
Sbjct: 238 NASLTDCVFEVERDTTVEEVNALLKEAAEGELKGILGYEERPLVSIDYKTDPRSSIVDAL 297
Query: 297 AGIALNKNFVKLVTWYDNEYGYSCRVLDLI 326
+ + +N VKL WYDNE+GY+ R +L
Sbjct: 298 STMVVNGTQVKLYAWYDNEWGYANRTAELA 327
>gnl|CDD|215131 PLN02237, PLN02237, glyceraldehyde-3-phosphate dehydrogenase B.
Length = 442
Score = 304 bits (779), Expect = e-100
Identities = 163/347 (46%), Positives = 217/347 (62%), Gaps = 10/347 (2%)
Query: 4 KIGINGFGRIGRLVLREALHR-NTP--VVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKT 60
K+ INGFGRIGR LR R ++P VV +ND V +++LKYDS G FK DVK
Sbjct: 77 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSMLGTFKADVKI 135
Query: 61 EGN-NIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119
+ I V+GK I V P ++PW++ G + ++E TGVF A H++ GAKKVII
Sbjct: 136 VDDETISVDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 195
Query: 120 TAPSK--DAPMFVCGVNLDKYDPSHS-VVSNASCTTNCLAPLAKVIHDNFEILEGLMTTV 176
TAP+K D P +V GVN D YD + +VSNASCTTNCLAP KV+ + F I++G MTT
Sbjct: 196 TAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTTNCLAPFVKVLDEEFGIVKGTMTTT 255
Query: 177 HAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVP 236
H+ T Q+ +DA S + R R A NI+P STGAAKAV+ V+P L+GKL G+A RVP P
Sbjct: 256 HSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTP 314
Query: 237 NVSVVDLTVRLCCD-VTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDA 295
NVSVVDL V + +T +++ A + A+ GP+KGIL + +VS DF SS DA
Sbjct: 315 NVSVVDLVVNVEKKGITAEDVNAAFRKAADGPLKGILAVCDVPLVSVDFRCSDVSSTIDA 374
Query: 296 KAGIALNKNFVKLVTWYDNEYGYSCRVLDLIQYMKSKDTGSKPKDTG 342
+ + + VK+V WYDNE+GYS RV+DL + +K G +G
Sbjct: 375 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAAKWPGGAAAGSG 421
>gnl|CDD|217235 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase,
C-terminal domain. GAPDH is a tetrameric NAD-binding
enzyme involved in glycolysis and glyconeogenesis.
C-terminal domain is a mixed alpha/antiparallel beta
fold.
Length = 157
Score = 263 bits (675), Expect = 1e-88
Identities = 107/158 (67%), Positives = 124/158 (78%), Gaps = 1/158 (0%)
Query: 155 LAPLAKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKA 214
LAPLAKV++DNF I +GLMTTVHA TA QK VD PS K R GR A NIIP STGAAKA
Sbjct: 1 LAPLAKVLNDNFGIEKGLMTTVHAYTADQKLVD-PSHKDLRRGRAAAPNIIPTSTGAAKA 59
Query: 215 VAKVIPDLEGKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGY 274
V V+P+L+GKLTGMAFRVP PNVSVVDLTV L VT +E+ A +K A++G +KGILGY
Sbjct: 60 VGLVLPELKGKLTGMAFRVPTPNVSVVDLTVELEKPVTVEEVNAALKEAAEGALKGILGY 119
Query: 275 TEDEVVSSDFNGEVCSSVFDAKAGIALNKNFVKLVTWY 312
TE+ +VSSDF G+ SS+FDAKA I LN NFVK+V WY
Sbjct: 120 TEEPLVSSDFVGDPHSSIFDAKATIVLNGNFVKVVAWY 157
>gnl|CDD|236219 PRK08289, PRK08289, glyceraldehyde-3-phosphate dehydrogenase;
Reviewed.
Length = 477
Score = 267 bits (685), Expect = 6e-86
Identities = 131/339 (38%), Positives = 187/339 (55%), Gaps = 22/339 (6%)
Query: 9 GFGRIGRLVLREALHRNTP---------VV-GINDPHLSVDYLAYMLKYDSTHGRFKGDV 58
GFGRIGRL+ R + + VV ++ L A +L+ DS HG F G +
Sbjct: 134 GFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKR--ASLLRRDSVHGPFNGTI 191
Query: 59 K--TEGNNIVVNGKKIAVFQKMKPEEIPWSQTGAE--YIVESTGVFKTKDTASAHLKG-G 113
E N I+ NG I V PEE+ ++ G +V++TG ++ ++ S HLK G
Sbjct: 192 TVDEENNAIIANGNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKG 251
Query: 114 AKKVIITAPSK-DAPMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGL 172
KV++TAP K D V GVN +VS ASCTTN + P+ K ++D + I+ G
Sbjct: 252 VAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIVSAASCTTNAITPVLKAVNDKYGIVNGH 311
Query: 173 MTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFR 232
+ TVH+ T Q +D K R GR A N++ TGAAKAVAK +P+L GKLTG A R
Sbjct: 312 VETVHSYTNDQNLIDNYHKG-DRRGRSAPLNMVITETGAAKAVAKALPELAGKLTGNAIR 370
Query: 233 VPVPNVSVVDLTVRLCCDVTYDEIKAKVKAAS-QGPMKGILGYTED-EVVSSDFNGEVCS 290
VP PNVS+ L + L + + +E+ ++ S P++ + YT+ EVVSSDF G +
Sbjct: 371 VPTPNVSMAILNLNLEKETSREELNEYLRQMSLHSPLQNQIDYTDSTEVVSSDFVGSRHA 430
Query: 291 SVFDAKAGIALNKNFVKLVTWYDNEYGYSCRVLDLIQYM 329
V D++A I V L WYDNE+GYSC+V+ +++ M
Sbjct: 431 GVVDSQATIVNGNRAV-LYVWYDNEFGYSCQVVRVMEQM 468
>gnl|CDD|130595 TIGR01532, E4PD_g-proteo, erythrose-4-phosphate dehydrogenase.
This model represents the small clade of dehydrogenases
in gamma-proteobacteria which utilize NAD+ to oxidize
erythrose-4-phosphate (E4P) to 4-phospho-erythronate, a
precursor for the de novo synthesis of pyridoxine via
4-hydroxythreonine and D-1-deoxyxylulose. This enzyme
activity appears to have evolved from
glyceraldehyde-3-phosphate dehydrogenase, whose
substrate differs only in the lack of one carbon
relative to E4P. Accordingly, this model is very close
to the corresponding models for GAPDH, and those
sequences which hit above trusted here invariably hit
between trusted and noise to the GAPDH model
(TIGR01534). Similarly, it may be found that there are
species outside of the gamma proteobacteria which
synthesize pyridoxine and have more than one aparrent
GAPDH gene of which one may have E4PD activity - this
may necessitate a readjustment of these models.
Alternatively, some of the GAPDH enzymes may prove to be
bifunctional in certain species [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pyridoxine].
Length = 325
Score = 258 bits (660), Expect = 3e-84
Identities = 120/329 (36%), Positives = 192/329 (58%), Gaps = 12/329 (3%)
Query: 4 KIGINGFGRIGRLVLREALHRN-----TPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDV 58
++ INGFGRIGR VLR AL+ + VV IN+ +A++LKYD++HGRF +V
Sbjct: 1 RVAINGFGRIGRNVLR-ALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFAWEV 58
Query: 59 KTEGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVI 118
+ + + + V I V + + +PW + G + +++ TGV+ +++ AH+ GAKKV+
Sbjct: 59 RQDRDQLFVGDDAIRVLHERSLQSLPWRELGVDLVLDCTGVYGSREHGEAHIAAGAKKVL 118
Query: 119 ITAPSK---DAPMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTT 175
+ P DA + V GVN D+ H +VSNASCTTNC+ P+ K++ D + I G +TT
Sbjct: 119 FSHPGASDLDATI-VYGVNQDQLRAEHRIVSNASCTTNCIVPVIKLLDDAYGIESGTITT 177
Query: 176 VHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPV 235
+H+ Q+ +DA + R R A+Q+IIP T A + + P + +A RVP
Sbjct: 178 IHSAMNDQQVIDAYHPDL-RRTRAASQSIIPVDTKLAAGIERFFPQFNDRFEAIAVRVPT 236
Query: 236 PNVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDA 295
NV+ +DL+V + V +E+ ++ A+QG ++GI+ YTE +VS DFN + S++ D
Sbjct: 237 VNVTAIDLSVTVKKPVKANEVNLLLQKAAQGALRGIVDYTELPLVSVDFNHDPHSAIVDG 296
Query: 296 KAGIALNKNFVKLVTWYDNEYGYSCRVLD 324
+ VK + W DNE+G++ R+LD
Sbjct: 297 TQTRVSGAHLVKTLVWCDNEWGFANRMLD 325
>gnl|CDD|184122 PRK13535, PRK13535, erythrose 4-phosphate dehydrogenase;
Provisional.
Length = 336
Score = 256 bits (657), Expect = 2e-83
Identities = 121/334 (36%), Positives = 190/334 (56%), Gaps = 12/334 (3%)
Query: 4 KIGINGFGRIGRLVLREAL-----HRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDV 58
++ INGFGRIGR VLR AL VV IN+ + +A++LKYD++HGRF DV
Sbjct: 3 RVAINGFGRIGRNVLR-ALYESGRRAEITVVAINEL-ADAEGMAHLLKYDTSHGRFAWDV 60
Query: 59 KTEGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVI 118
+ E + + V I + + +PW + G + +++ TGV+ +++ AH+ GAKKV+
Sbjct: 61 RQERDQLFVGDDAIRLLHERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVL 120
Query: 119 ITAPSK---DAPMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTT 175
+ P DA + V GVN D+ H +VSNASCTTNC+ P+ K++ D F I G +TT
Sbjct: 121 FSHPGSNDLDATV-VYGVNHDQLRAEHRIVSNASCTTNCIIPVIKLLDDAFGIESGTVTT 179
Query: 176 VHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPV 235
+H+ Q+ +DA + R R A+Q+IIP T A + ++ P + ++ RVP
Sbjct: 180 IHSAMNDQQVIDAYHPDL-RRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISVRVPT 238
Query: 236 PNVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDA 295
NV+ +DL+V + V +E+ ++ A+QG GI+ YTE +VS DFN + S++ D
Sbjct: 239 INVTAIDLSVTVKKPVKVNEVNQLLQKAAQGAFHGIVDYTELPLVSIDFNHDPHSAIVDG 298
Query: 296 KAGIALNKNFVKLVTWYDNEYGYSCRVLDLIQYM 329
+ +K + W DNE+G++ R+LD M
Sbjct: 299 TQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAM 332
>gnl|CDD|215675 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD
binding domain. GAPDH is a tetrameric NAD-binding
enzyme involved in glycolysis and glyconeogenesis.
N-terminal domain is a Rossmann NAD(P) binding fold.
Length = 148
Score = 231 bits (591), Expect = 4e-76
Identities = 87/148 (58%), Positives = 108/148 (72%), Gaps = 3/148 (2%)
Query: 4 KIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEG 62
K+GINGFGRIGRLVLR AL + + VV IND + LAY+LKYDS HGRF G+V+ +
Sbjct: 2 KVGINGFGRIGRLVLRAALAQDDLEVVAINDL-TDPETLAYLLKYDSVHGRFDGEVEVDE 60
Query: 63 NNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAP 122
+ ++VNGKKI VF + P E+PW + G + +VESTGVF T + A AHLK GAKKVII+AP
Sbjct: 61 DGLIVNGKKIKVFAERDPAELPWGELGVDIVVESTGVFTTAEKAEAHLKAGAKKVIISAP 120
Query: 123 SKD-APMFVCGVNLDKYDPSHSVVSNAS 149
+KD P FV GVN + YDP +VSNAS
Sbjct: 121 AKDDDPTFVYGVNHEDYDPEDDIVSNAS 148
>gnl|CDD|214851 smart00846, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD
binding domain. GAPDH is a tetrameric NAD-binding
enzyme involved in glycolysis and glyconeogenesis.
N-terminal domain is a Rossmann NAD(P) binding fold.
Length = 149
Score = 225 bits (575), Expect = 9e-74
Identities = 91/149 (61%), Positives = 108/149 (72%), Gaps = 3/149 (2%)
Query: 4 KIGINGFGRIGRLVLREALHRNT-PVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEG 62
K+GINGFGRIGRLVLR AL R VV IND +YLAY+LKYDS HGRF G V+ EG
Sbjct: 2 KVGINGFGRIGRLVLRAALERPDVEVVAINDLT-DPEYLAYLLKYDSVHGRFPGTVEVEG 60
Query: 63 NNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAP 122
+ +VVNGK I VF + P +PW + G + +VE TG F T++ ASAHLK GAKKVII+AP
Sbjct: 61 DGLVVNGKAIKVFAERDPANLPWGELGVDIVVECTGGFTTREKASAHLKAGAKKVIISAP 120
Query: 123 SKDA-PMFVCGVNLDKYDPSHSVVSNASC 150
SKDA P FV GVN D+YD ++SNASC
Sbjct: 121 SKDADPTFVYGVNHDEYDGEDHIISNASC 149
>gnl|CDD|173546 PTZ00353, PTZ00353, glycosomal glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 342
Score = 184 bits (469), Expect = 2e-55
Identities = 107/342 (31%), Positives = 179/342 (52%), Gaps = 12/342 (3%)
Query: 1 MAYKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKG-DV 58
+ +GINGFG +G+ VL +L VV +ND +S+ Y+AY+L+ +S G +
Sbjct: 1 LPITVGINGFGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASI 60
Query: 59 KTEGNNIVVNG-KKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKV 117
+ G IV+NG +KI V K EI W G +Y+VE TG++ T+ H+ GGAK V
Sbjct: 61 RVVGEQIVLNGTQKIRVSAKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGV 120
Query: 118 IITAPSKDAPMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVH 177
+ S DAP + G N ++ S V + LAP+ + +H+ + + E T +H
Sbjct: 121 FVAGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALAPVIRALHEVYGVEECSYTAIH 180
Query: 178 AVTATQKTVDAPSK--KMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPV 235
Q+ + A SK + WR R A I P A+ V K++P L G+++G AF+VPV
Sbjct: 181 G-MQPQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGSAFQVPV 239
Query: 236 PNVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDF--NGEVCSSVF 293
+D+ VR V+ + + + + A+ + G+L ++ +++S D NG++C +
Sbjct: 240 KKGCAIDMLVRTKQPVSKEVVDSALAEAASDRLNGVLCISKRDMISVDCIPNGKLC---Y 296
Query: 294 DAKAGIALNKNFV-KLVTWYDNEYGYSCRVLDLIQYMKSKDT 334
DA + + + V K+V W+D E Y+ R+L L++ +
Sbjct: 297 DATSSSSSREGEVHKMVLWFDVECYYAARLLSLVKQLHQIHA 338
>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid
dehydrogenases. 2-Hydroxyacid dehydrogenases catalyze
the conversion of a wide variety of D-2-hydroxy acids to
their corresponding keto acids. The general mechanism is
(R)-lactate + acceptor to pyruvate + reduced acceptor.
Formate/glycerate and related dehydrogenases of the
D-specific 2-hydroxyacid dehydrogenase superfamily
include groups such as formate dehydrogenase, glycerate
dehydrogenase, L-alanine dehydrogenase, and
S-adenosylhomocysteine hydrolase. Despite often low
sequence identity, these proteins typically have a
characteristic arrangement of 2 similar subdomains of
the alpha/beta Rossmann fold NAD+ binding form. The NAD+
binding domain is inserted within the linear sequence of
the mostly N-terminal catalytic domain, which has a
similar domain structure to the internal NAD binding
domain. Structurally, these domains are connected by
extended alpha helices and create a cleft in which NAD
is bound, primarily to the C-terminal portion of the 2nd
(internal) domain. Some related proteins have similar
structural subdomain but with a tandem arrangement of
the catalytic and NAD-binding subdomains in the linear
sequence. While many members of this family are dimeric,
alanine DH is hexameric and phosphoglycerate DH is
tetrameric.
Length = 330
Score = 37.9 bits (89), Expect = 0.006
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 4 KIGINGFGRIGRLVLR--EALHRNTPVVGINDPHLSVDYLAYM 44
+GI GFGRIGR V+ V + DP+L A +
Sbjct: 152 TVGIVGFGRIGRAVVELLRPFG---LRVLVYDPYLPAAEAAAL 191
>gnl|CDD|223214 COG0136, Asd, Aspartate-semialdehyde dehydrogenase [Amino acid
transport and metabolism].
Length = 334
Score = 36.4 bits (85), Expect = 0.019
Identities = 47/202 (23%), Positives = 76/202 (37%), Gaps = 35/202 (17%)
Query: 64 NIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPS 123
I GK I V + +E +S + + + G +K+ + G V+I S
Sbjct: 44 YIEFGGKSIGV-PEDAADEFVFSD--VDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSS 98
Query: 124 -----KDAPMFVCGVN---LDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTT 175
D P+ V VN L Y +++N +C+T L K +HD F I +++T
Sbjct: 99 AFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANPNCSTIQLVLALKPLHDAFGIKRVVVST 158
Query: 176 VHAVT-ATQKTVDA---------PSKKMWRDGRGANQNIIPASTGAA---------KAVA 216
AV+ A + + G N+IP G K A
Sbjct: 159 YQAVSGAGAEGGVELAGQTDALLNGIPILPIGYPLAFNVIPHIDGFLDNGYTKEEWKIEA 218
Query: 217 ---KVIPDLEGKLTGMAFRVPV 235
K++ D + K++ RVPV
Sbjct: 219 ETRKILGDPDIKVSATCVRVPV 240
>gnl|CDD|233347 TIGR01296, asd_B, aspartate-semialdehyde dehydrogenase
(peptidoglycan organisms). Two closely related families
of aspartate-semialdehyde dehydrogenase are found. They
differ by a deep split in phylogenetic and percent
identity trees and in gap patterns. This model
represents a branch more closely related to the USG-1
protein than to the other aspartate-semialdehyde
dehydrogenases represented in model TIGR00978 [Amino
acid biosynthesis, Aspartate family].
Length = 338
Score = 33.6 bits (77), Expect = 0.14
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 124 KDAPMFVCGVNL--DKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVHAVT 180
D P+ V VN K +++N +C+T + + K +HD +I +++T AV+
Sbjct: 99 PDVPLVVPEVNFEDLKEFNPKGIIANPNCSTIQMVVVLKPLHDEAKIKRVVVSTYQAVS 157
>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases,
NAD-binding and catalytic domains. Phosphoglycerate
dehydrogenases (PGDHs) catalyze the initial step in the
biosynthesis of L-serine from D-3-phosphoglycerate.
PGDHs come in 3 distinct structural forms, with this
first group being related to 2-hydroxy acid
dehydrogenases, sharing structural similarity to formate
and glycerate dehydrogenases of the D-specific
2-hydroxyacid dehydrogenase superfamily, which also
include groups such as L-alanine dehydrogenase and
S-adenosylhomocysteine hydrolase. Despite often low
sequence identity, these proteins typically have a
characteristic arrangement of 2 similar subdomains of
the alpha/beta Rossmann fold NAD+ binding form. The NAD+
binding domain is inserted within the linear sequence of
the mostly N-terminal catalytic domain, which has a
similar domain structure to the internal NAD binding
domain. Structurally, these domains are connected by
extended alpha helices and create a cleft in which NAD
is bound, primarily to the C-terminal portion of the 2nd
(internal) domain. Some related proteins have similar
structural subdomain but with a tandem arrangement of
the catalytic and NAD-binding subdomains in the linear
sequence. Many, not all, members of this family are
dimeric.
Length = 305
Score = 33.3 bits (77), Expect = 0.17
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVD 39
+G+ G G IGRLV AL V+G DP+LSV+
Sbjct: 137 TLGVIGLGNIGRLVANAALALGMKVIGY-DPYLSVE 171
>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid
dehydrogenase, NAD binding domain. This domain is
inserted into the catalytic domain, the large
dehydrogenase and D-lactate dehydrogenase families in
SCOP. N-terminal portion of which is represented by
family pfam00389.
Length = 175
Score = 32.4 bits (75), Expect = 0.19
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDS 49
+GI G GRIGR V R V+ D + + A +Y S
Sbjct: 37 TVGIIGLGRIGRAVARRLKAFGMKVIA-YDRYPKAEAEALGARYVS 81
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 31.1 bits (71), Expect = 0.72
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 15 RLVLREALHRNTPVVGINDPHLSVDYLAYMLKY--DSTHGRFKGDVKTEGNNIVVNGKKI 72
RLVLR + P ++ L+ Y L+Y D G+ ++ +G+ ++
Sbjct: 203 RLVLRPGIPHPDPAYLFDEGKLTCSYPGIALRYGPDRYMGKPVDVLEVDGH---ATLEQF 259
Query: 73 AVFQKMKPEEIPWSQTGAEYIVESTGVF-KTKD 104
++M E S T +Y E TG+ D
Sbjct: 260 DNLEEMIYIEPHLSNTSTKYYGELTGLLLGHTD 292
>gnl|CDD|218243 pfam04752, ChaC, ChaC-like protein. The ChaC protein is thought to
be associated with the putative ChaA Ca2+/H+ cation
transport protein in Escherichia coli. Its function is
not known. This family also includes homologues regions
from several other bacterial and eukaryotic proteins.
Length = 178
Score = 30.8 bits (70), Expect = 0.75
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 5/68 (7%)
Query: 215 VAKVIPDLEGKLTGMAFRVPVPNV-SVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGI-- 271
V + EG+ G+A+RVP V++ Y+ + +
Sbjct: 49 VLTLEEGEEGRCWGVAYRVPGEEAEEVLEYLDVREKVNGYETESVPFYPRLDVGTEPVVL 108
Query: 272 --LGYTED 277
L Y
Sbjct: 109 RALVYVAT 116
>gnl|CDD|216949 pfam02254, TrkA_N, TrkA-N domain. This domain is found in a wide
variety of proteins. These protein include potassium
channels, phosphoesterases, and various other
transporters. This domain binds to NAD.
Length = 116
Score = 29.5 bits (67), Expect = 1.0
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 9 GFGRIGRLVLREALHRNTPVVGI-NDP 34
G+GR+GR + E VV I DP
Sbjct: 5 GYGRVGRSLAEELREGGPDVVVIDKDP 31
>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD). These
alcohol dehydrogenases are related to the cinnamyl
alcohol dehydrogenases (CAD), members of the medium
chain dehydrogenase/reductase family.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. Cinnamyl alcohol dehydrogenases
(CAD) reduce cinnamaldehydes to cinnamyl alcohols in the
last step of monolignal metabolism in plant cells walls.
CAD binds 2 zinc ions and is NADPH- dependent. CAD
family members are also found in non-plant species, e.g.
in yeast where they have an aldehyde reductase activity.
The medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 341
Score = 30.6 bits (70), Expect = 1.3
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 89 GAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPSKDA 126
GA+ V+ + GGA V++TA S A
Sbjct: 210 GADAFVDFKKSDDVEAVKELTGGGGAHAVVVTAVSAAA 247
>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional.
Length = 385
Score = 30.4 bits (69), Expect = 1.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 4 KIGINGFGRIGRLVLR 19
+GI G GRIG VLR
Sbjct: 194 TVGIVGAGRIGLAVLR 209
>gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup
contains atypical SDRs, some of which are identified as
putative NAD(P)-dependent epimerases, one as a putative
NAD-dependent epimerase/dehydratase. Atypical SDRs are
distinct from classical SDRs. Members of this subgroup
have a glycine-rich NAD(P)-binding motif that is very
similar to the extended SDRs, GXXGXXG, and binds NADP.
Generally, this subgroup has poor conservation of the
active site tetrad; however, individual sequences do
contain matches to the YXXXK active site motif, the
upstream Ser, and there is a highly conserved Asp in
place of the usual active site Asn throughout the
subgroup. Atypical SDRs generally lack the catalytic
residues characteristic of the SDRs, and their
glycine-rich NAD(P)-binding motif is often different
from the forms normally seen in classical or extended
SDRs. Atypical SDRs include biliverdin IX beta
reductase (BVR-B,aka flavin reductase), NMRa (a
negative transcriptional regulator of various fungi),
progesterone 5-beta-reductase like proteins,
phenylcoumaran benzylic ether and
pinoresinol-lariciresinol reductases, phenylpropene
synthases, eugenol synthase, triphenylmethane
reductase, isoflavone reductases, and others. SDRs are
a functionally diverse family of oxidoreductases that
have a single domain with a structurally conserved
Rossmann fold, an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Sequence
identity between different SDR enzymes is typically in
the 15-30% range; they catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, human 15-hydroxyprostaglandin
dehydrogenase numbering). In addition to the Tyr and
Lys, there is often an upstream Ser and/or an Asn,
contributing to the active site; while substrate
binding is in the C-terminal region, which determines
specificity. The standard reaction mechanism is a
4-pro-S hydride transfer and proton relay involving the
conserved Tyr and Lys, a water molecule stabilized by
Asn, and nicotinamide. In addition to the Rossmann fold
core region typical of all SDRs, extended SDRs have a
less conserved C-terminal extension of approximately
100 amino acids, and typically have a TGXXGXXG cofactor
binding motif. Complex (multidomain) SDRs such as
ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 203
Score = 29.5 bits (67), Expect = 2.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 11 GRIGRLVLREALHRNTPVVGI 31
G++GR V+RE L R V +
Sbjct: 9 GKVGRHVVRELLDRGYQVRAL 29
>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related
dehydrogenases [Amino acid transport and metabolism].
Length = 324
Score = 29.6 bits (67), Expect = 2.9
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLS 37
+GI G GRIGR V + V+G DP+
Sbjct: 144 TVGIIGLGRIGRAVAKRLKAFGMKVIG-YDPYSP 176
>gnl|CDD|201778 pfam01408, GFO_IDH_MocA, Oxidoreductase family, NAD-binding
Rossmann fold. This family of enzymes utilise NADP or
NAD. This family is called the GFO/IDH/MOCA family in
swiss-prot.
Length = 120
Score = 27.9 bits (63), Expect = 4.0
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 4 KIGINGFGRIGRLVLREALHRNTP---VVGINDPHLS 37
++GI G G+IGR LR AL+ + +VGI DP +
Sbjct: 2 RVGIVGAGKIGRRHLR-ALNESQDGAELVGILDPDPA 37
>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases,
NAD-binding and catalytic domains. Phosphoglycerate
dehydrogenases (PGDHs) catalyze the initial step in the
biosynthesis of L-serine from D-3-phosphoglycerate.
PGDHs come in 3 distinct structural forms, with this
first group being related to 2-hydroxy acid
dehydrogenases, sharing structural similarity to formate
and glycerate dehydrogenases of the D-specific
2-hydroxyacid dehydrogenase superfamily, which also
include groups such as L-alanine dehydrogenase and
S-adenosylhomocysteine hydrolase. Despite often low
sequence identity, these proteins typically have a
characteristic arrangement of 2 similar subdomains of
the alpha/beta Rossmann fold NAD+ binding form. The NAD+
binding domain is inserted within the linear sequence of
the mostly N-terminal catalytic domain, which has a
similar domain structure to the internal NAD binding
domain. Structurally, these domains are connected by
extended alpha helices and create a cleft in which NAD
is bound, primarily to the C-terminal portion of the 2nd
(internal) domain. Some related proteins have similar
structural subdomain but with a tandem arrangement of
the catalytic and NAD-binding subdomains in the linear
sequence. Many, not all, members of this family are
dimeric.
Length = 306
Score = 29.0 bits (66), Expect = 4.3
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLA 42
+GI G GRIG+ V R V+ DP+ ++
Sbjct: 144 TLGIIGLGRIGKAVARRLSGFGMKVL-AYDPYPDEEFAK 181
>gnl|CDD|130460 TIGR01393, lepA, GTP-binding protein LepA. LepA (GUF1 in
Saccaromyces) is a GTP-binding membrane protein related
to EF-G and EF-Tu. Two types of phylogenetic tree,
rooted by other GTP-binding proteins, suggest that
eukaryotic homologs (including GUF1 of yeast) originated
within the bacterial LepA family. The function is
unknown [Unknown function, General].
Length = 595
Score = 28.8 bits (65), Expect = 5.4
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 72 IAVFQ-KMKP-EEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITA 121
+ VF+ +KP ++I + TG EY V+ GVF K T + L G II
Sbjct: 209 VRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKLTKTDELSAGEVGYIIAG 260
>gnl|CDD|99966 cd03792, GT1_Trehalose_phosphorylase, Trehalose phosphorylase (TP)
reversibly catalyzes trehalose synthesis and degradation
from alpha-glucose-1-phosphate (alpha-Glc-1-P) and
glucose. The catalyzing activity includes the
phosphorolysis of trehalose, which produce alpha-Glc-1-P
and glucose, and the subsequent synthesis of trehalose.
This family is most closely related to the GT1 family of
glycosyltransferases.
Length = 372
Score = 28.7 bits (65), Expect = 5.8
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Query: 9 GFGRIGRLVLREALHRNTPVVGIN 32
GFG L + EAL + PV+
Sbjct: 285 GFG----LTVTEALWKGKPVIAGP 304
>gnl|CDD|193547 cd05672, M20_ACY1L2_like, M20 Peptidase Aminoacylase 1-like protein
2-like, amidohydrolase subfamily. Peptidase M20 family,
Aminoacylase 1-like protein 2 (ACY1L2;
amidohydrolase)-like subfamily. This group contains many
uncharacterized proteins predicted as amidohydrolases,
including gene products of abgA and abgB that catalyze
the cleavage of p-aminobenzoyl-glutamate, a folate
catabolite in Escherichia coli , to p-aminobenzoate and
glutamate. p-Aminobenzoyl-glutamate utilization is
catalyzed by the abg region gene product, AbgT.
Aminoacylase 1 (ACY1) proteins are a class of zinc
binding homodimeric enzymes involved in hydrolysis of
N-acetylated proteins. N-terminal acetylation of
proteins is a widespread and highly conserved process
that is involved in the protection and stability of
proteins. Several types of aminoacylases can be
distinguished on the basis of substrate specificity.
ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino
acids (except L-aspartate), especially
N-acetyl-methionine and acetyl-glutamate into L-amino
acids and an acyl group. However, ACY1 can also catalyze
the reverse reaction, the synthesis of acetylated amino
acids. ACY1 may also play a role in xenobiotic
bioactivation as well as the inter-organ processing of
amino acid-conjugated xenobiotic derivatives
(S-substituted-N-acetyl-L-cysteine).
Length = 358
Score = 28.6 bits (65), Expect = 6.2
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 203 NII-PASTGAAKAVAKVIPDLEGKLT 227
N+I AS GAA A+ K + +L G +
Sbjct: 85 NLIAAASVGAALALKKALDELGGTVV 110
>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase
(GDH). D-glycerate dehydrogenase (GDH, also known as
hydroxypyruvate reductase, HPR) catalyzes the reversible
reaction of (R)-glycerate + NAD+ to hydroxypyruvate +
NADH + H+. In humans, HPR deficiency causes primary
hyperoxaluria type 2, characterized by over-excretion of
L-glycerate and oxalate in the urine, possibly due to an
imbalance in competition with L-lactate dehydrogenase,
another formate dehydrogenase (FDH)-like enzyme. GDH,
like FDH and other members of the D-specific hydroxyacid
dehydrogenase family that also includes L-alanine
dehydrogenase and S-adenosylhomocysteine hydrolase,
typically have a characteristic arrangement of 2 similar
subdomains of the alpha/beta Rossmann-fold NAD+ binding
form, despite often low sequence identity. The NAD+
binding domain is inserted within the linear sequence of
the mostly N-terminal catalytic domain, which has a
similar domain structure to the internal NAD binding
domain. Structurally, these domains are connected by
extended alpha helices and create a cleft in which NAD
is bound, primarily to the C-terminal portion of the 2nd
(internal) domain. Some related proteins have similar
structural subdomain but with a tandem arrangement of
the catalytic and NAD-binding subdomains in the linear
sequence. While many members of this family are dimeric,
alanine DH is hexameric and phosphoglycerate DH is
tetrameric.
Length = 309
Score = 28.1 bits (64), Expect = 6.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 4 KIGINGFGRIGRLVLREA 21
+GI G GRIG+ V R A
Sbjct: 146 TLGIVGMGRIGQAVARRA 163
>gnl|CDD|202773 pfam03807, F420_oxidored, NADP oxidoreductase coenzyme
F420-dependent.
Length = 93
Score = 26.4 bits (59), Expect = 7.7
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLS 37
KIGI G G +G + R VV N +
Sbjct: 1 KIGIIGAGNMGEALARGLAAAGHEVVIANSRNPE 34
>gnl|CDD|99993 cd03823, GT1_ExpE7_like, This family is most closely related to the
GT1 family of glycosyltransferases. ExpE7 in
Sinorhizobium meliloti has been shown to be involved in
the biosynthesis of galactoglucans (exopolysaccharide
II).
Length = 359
Score = 28.0 bits (63), Expect = 7.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 16 LVLREALHRNTPVVG 30
LV+REAL PV+
Sbjct: 278 LVIREALAAGVPVIA 292
>gnl|CDD|236335 PRK08724, fliD, flagellar capping protein; Validated.
Length = 673
Score = 28.3 bits (63), Expect = 8.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 301 LNKNFVKLVTWYDNEYGYSCRVLDLIQYM 329
LN NF KL ++ G++ RV D IQ M
Sbjct: 580 LNNNFNKLEEFFGGNTGFAKRVEDAIQSM 608
>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP),
D-isomer-specific 2-hydroxyacid dehydrogenases related
repressor. The transcriptional corepressor CtBP is a
dehydrogenase with sequence and structural similarity to
the d2-hydroxyacid dehydrogenase family. CtBP was
initially identified as a protein that bound the PXDLS
sequence at the adenovirus E1A C terminus, causing the
loss of CR-1-mediated transactivation. CtBP binds NAD(H)
within a deep cleft, undergoes a conformational change
upon NAD binding, and has NAD-dependent dehydrogenase
activity.
Length = 312
Score = 27.9 bits (63), Expect = 9.1
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 9/44 (20%)
Query: 5 IGINGFGRIGRLVLREALHRNTPVVGIN----DPHLSVDYLAYM 44
+G+ GFGRIGR V + A G DP++ A
Sbjct: 145 LGLVGFGRIGRAVAKRAK-----AFGFRVIAYDPYVPDGVAALG 183
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain. Histones can
be reversibly acetylated on several lysine residues.
Regulation of transcription is caused in part by this
mechanism. Histone deacetylases catalyze the removal of
the acetyl group. Histone deacetylases are related to
other proteins.
Length = 300
Score = 27.6 bits (62), Expect = 9.6
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 7 INGFGRIGRLVLREALHRNTPVV-----GINDPHLS 37
G+ RL+L A PVV G N L+
Sbjct: 254 TEGYAERTRLLLELADAYGGPVVSVLEGGYNLDALA 289
>gnl|CDD|165211 PHA02882, PHA02882, putative serine/threonine kinase; Provisional.
Length = 294
Score = 27.6 bits (61), Expect = 9.6
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
Query: 15 RLVLREALHRNTP-----VVGINDP---HLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIV 66
R +L E L NT + N ++ D L L+Y HG GD+K E NI+
Sbjct: 102 RFILLEKLVENTKEIFKRIKCKNKKLIKNIMKDML-TTLEYIHEHGISHGDIKPE--NIM 158
Query: 67 VNGK 70
V+G
Sbjct: 159 VDGN 162
>gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding.
Length = 182
Score = 27.3 bits (61), Expect = 9.7
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 7 INGFGRIGRLVLREALHRNTPVVGI 31
I G+ GR +++E L R V +
Sbjct: 4 IGATGKTGRRLVKELLARGHQVTAL 28
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.133 0.391
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,050,966
Number of extensions: 1695812
Number of successful extensions: 1589
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1520
Number of HSP's successfully gapped: 68
Length of query: 364
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 266
Effective length of database: 6,590,910
Effective search space: 1753182060
Effective search space used: 1753182060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.7 bits)