RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8544
(364 letters)
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase,
structural genomics, structural genomics CON SGC,
glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB:
3pfw_O* 2vyn_D* 2vyv_D*
Length = 346
Score = 677 bits (1749), Expect = 0.0
Identities = 217/334 (64%), Positives = 266/334 (79%), Gaps = 1/334 (0%)
Query: 1 MAYKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKT 60
+GINGFGRIGRLVLR + + VV +NDP + +Y+ YM KYDSTHGR+KG V+
Sbjct: 6 RELTVGINGFGRIGRLVLRACMEKGVKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEF 65
Query: 61 EGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIIT 120
+VV+ +I+V+Q +P++IPW G+ Y+VESTGV+ + AS H+ GA++V+I+
Sbjct: 66 RNGQLVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVIS 125
Query: 121 APSKDAPMFVCGVNLDKYDP-SHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVHAV 179
APS DAPMFV GVN + Y+P S ++VSNASCTTNCLAPLAKVIH+ F I+EGLMTTVH+
Sbjct: 126 APSPDAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGLMTTVHSY 185
Query: 180 TATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPNVS 239
TATQKTVD PS+K WRDGRGA+QNIIPASTGAAKAV KVIP+L+GKLTGMAFRVP P+VS
Sbjct: 186 TATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFRVPTPDVS 245
Query: 240 VVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGI 299
VVDLT RL Y IK VKAA++GPM GIL YTEDEVVS+DF G+ SS+FDAKAGI
Sbjct: 246 VVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTHSSIFDAKAGI 305
Query: 300 ALNKNFVKLVTWYDNEYGYSCRVLDLIQYMKSKD 333
ALN NFVKL++WYDNEYGYS RV+DL++YM S+D
Sbjct: 306 ALNDNFVKLISWYDNEYGYSHRVVDLLRYMFSRD 339
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding
rossmann-fold domain, alpha and beta protein,
oxidoreductase; HET: NAD; 2.00A {Saccharomyces
cerevisiae} PDB: 2i5p_O*
Length = 332
Score = 666 bits (1722), Expect = 0.0
Identities = 211/327 (64%), Positives = 258/327 (78%), Gaps = 1/327 (0%)
Query: 4 KIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEG 62
++ INGFGRIGRLV+R AL R N VV +NDP ++ DY AYM KYDSTHGR+ G+V +
Sbjct: 3 RVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSHDD 62
Query: 63 NNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAP 122
+I+V+GKKIA +Q+ P +PW + + ++STGVFK DTA H+ GAKKV+ITAP
Sbjct: 63 KHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAP 122
Query: 123 SKDAPMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVHAVTAT 182
S APMFV GVN +KY +VSNASCTTNCLAPLAKVI+D F I EGLMTTVH++TAT
Sbjct: 123 SSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSLTAT 182
Query: 183 QKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPNVSVVD 242
QKTVD PS K WR GR A+ NIIP+STGAAKAV KV+P+L+GKLTGMAFRVP +VSVVD
Sbjct: 183 QKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVVD 242
Query: 243 LTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIALN 302
LTV+L + TYDEIK VKAA++G +KG+LGYTED VVSSDF G+ SS+FDA AGI L+
Sbjct: 243 LTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGIQLS 302
Query: 303 KNFVKLVTWYDNEYGYSCRVLDLIQYM 329
FVKLV+WYDNEYGYS RV+DL++++
Sbjct: 303 PKFVKLVSWYDNEYGYSTRVVDLVEHV 329
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis,
malaria, structural genomics; HET: NAD; 1.90A
{Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A*
3chz_A 3cie_A* 3cif_A* 3sth_A*
Length = 354
Score = 666 bits (1720), Expect = 0.0
Identities = 211/338 (62%), Positives = 253/338 (74%), Gaps = 5/338 (1%)
Query: 1 MAYKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVK 59
+GINGFGRIGRLVLR + R + VV INDP + V+Y+AY+LKYDS HG F G V+
Sbjct: 16 FQGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVE 75
Query: 60 TEGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119
G ++ +NGK + VFQ P EIPW +GA+ + ESTGVF T++ AS HLKGGAKKVII
Sbjct: 76 VSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVII 135
Query: 120 TAPSKD-APMFVCGVNLDKYDPS-HSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVH 177
+AP KD PM+V GVN +YDPS +V+SNASCTTNCLAPLAK+I+D F I+EGLMTTVH
Sbjct: 136 SAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVH 195
Query: 178 AVTATQKTVDAPSK--KMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPV 235
++TA Q TVD PSK K WR GR A NIIPASTGAAKAV KVIP L GKLTGMA RVP
Sbjct: 196 SLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPT 255
Query: 236 PNVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDA 295
P+VSVVDLT +L + +EI VK AS GPMKGI+GYT D+VVS+DF G SS+FD
Sbjct: 256 PDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFDK 315
Query: 296 KAGIALNKNFVKLVTWYDNEYGYSCRVLDLIQYMKSKD 333
A IALN +FVKL++WYDNE GYS R++DL Y+ S+
Sbjct: 316 NACIALNDSFVKLISWYDNESGYSNRLVDLAVYVASRG 353
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann
fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A
{Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O*
1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A*
1gpd_G* 4gpd_1
Length = 335
Score = 662 bits (1710), Expect = 0.0
Identities = 225/331 (67%), Positives = 265/331 (80%), Gaps = 1/331 (0%)
Query: 4 KIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEG 62
K+G+NGFGRIGRLV R A + +V INDP + ++Y+ YM +YDSTHG+F G VK E
Sbjct: 5 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAEN 64
Query: 63 NNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAP 122
+V+NG I +FQ+ P +I W GAEY+VESTGVF T + A AHL+GGAK+VII+AP
Sbjct: 65 GKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAP 124
Query: 123 SKDAPMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVHAVTAT 182
S DAPMFV GVN +KYD S ++SNASCTTNCLAPLAKVIHDNF I+EGLMTTVHA+TAT
Sbjct: 125 SADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITAT 184
Query: 183 QKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPNVSVVD 242
QKTVD PS K+WRDGRGA QNIIPASTGAAKAV KVIP+L GKLTGMAFRVP NVSVVD
Sbjct: 185 QKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVD 244
Query: 243 LTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIALN 302
LT RL YD+IK VK AS+GP+KGILGYTE +VVSSDFN + SS FDA AGIALN
Sbjct: 245 LTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALN 304
Query: 303 KNFVKLVTWYDNEYGYSCRVLDLIQYMKSKD 333
+FVKL++WYDNE+GYS RV+DL+ +M SK+
Sbjct: 305 DHFVKLISWYDNEFGYSNRVVDLMAHMASKE 335
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH,
RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET:
NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Length = 337
Score = 660 bits (1705), Expect = 0.0
Identities = 218/336 (64%), Positives = 267/336 (79%), Gaps = 4/336 (1%)
Query: 1 MAY-KIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKG-D 57
M KIGINGFGRIGRLV R AL + +V +NDP ++ DY+ YM KYD+ HG++K D
Sbjct: 1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSD 60
Query: 58 VKTE-GNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKK 116
+K + +++ K + VF P+EIPW++ GAEY+VESTGVF K+ A+AHLKGGAKK
Sbjct: 61 IKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKK 120
Query: 117 VIITAPSKDAPMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTV 176
V+I+APSKDAPMFVCGVN DKY +VSNASCTTNCLAPLAKVIHDNF I+EGLMTTV
Sbjct: 121 VVISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTV 180
Query: 177 HAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVP 236
HA+TATQKTVD PS K WR GR A+ NIIP+STGAAKAV KV+PDL GKLTGM+FRVP
Sbjct: 181 HAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTV 240
Query: 237 NVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAK 296
+VSVVDLTVR+ +YD IK+ +K+AS+G +KGI+GY E+++VS+DF G+ SS+FDAK
Sbjct: 241 DVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAK 300
Query: 297 AGIALNKNFVKLVTWYDNEYGYSCRVLDLIQYMKSK 332
AGIALN NFVKLV WYDNE+GYS RV+DLI++M
Sbjct: 301 AGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKT 336
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural
genomics, PSI, structural genomi pathogenic protozoa
consortium; HET: NAD AES; 2.25A {Plasmodium falciparum}
SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*
Length = 345
Score = 656 bits (1694), Expect = 0.0
Identities = 200/334 (59%), Positives = 249/334 (74%), Gaps = 4/334 (1%)
Query: 2 AYKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKT 60
A K+GINGFGRIGRLV R A R + VV INDP + +++L Y+LKYDS HG+F +V
Sbjct: 11 ATKLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTH 70
Query: 61 EGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIIT 120
+++ KK++VF + P +IPW + + + ESTGVF TK+ AS+HLKGGAKKVI++
Sbjct: 71 ADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMS 130
Query: 121 APSKD-APMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVHAV 179
AP KD P++V G+N +YD +VSNASCTTNCLAPLAKVI+D F I+EGLMTTVHA
Sbjct: 131 APPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAS 190
Query: 180 TATQKTVDAPSK--KMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPN 237
TA Q VD PSK K WR GR A NIIPASTGAAKAV KV+P+L GKLTG+AFRVP+
Sbjct: 191 TANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRVPIGT 250
Query: 238 VSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKA 297
VSVVDL RL Y+E+ ++K A++GP+KGILGYTEDEVVS DF + SS+FD KA
Sbjct: 251 VSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDEVVSQDFVHDNRSSIFDMKA 310
Query: 298 GIALNKNFVKLVTWYDNEYGYSCRVLDLIQYMKS 331
G+ALN NF KLV+WYDNE+GYS RVLDL ++ +
Sbjct: 311 GLALNDNFFKLVSWYDNEWGYSNRVLDLAVHITT 344
>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia
coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A*
1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*
Length = 330
Score = 654 bits (1691), Expect = 0.0
Identities = 222/328 (67%), Positives = 262/328 (79%), Gaps = 4/328 (1%)
Query: 4 KIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEG 62
K+GINGFGRIGR+V R A R + +V IND L DY+AYMLKYDSTHGRF G V+ +
Sbjct: 3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-LDADYMAYMLKYDSTHGRFDGTVEVKD 61
Query: 63 NNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAP 122
+++VNGKKI V + P + W + G + + E+TG+F T +TA H+ GAKKV++T P
Sbjct: 62 GHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGP 121
Query: 123 SKD-APMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVHAVTA 181
SKD PMFV G N DKY +VSNASCTTNCLAPLAKVI+DNF I+EGLMTTVHA TA
Sbjct: 122 SKDNTPMFVKGANFDKYAGQD-IVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTA 180
Query: 182 TQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPNVSVV 241
TQKTVD PS K WR GRGA+QNIIP+STGAAKAV KV+P+L GKLTGMAFRVP PNVSVV
Sbjct: 181 TQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVV 240
Query: 242 DLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIAL 301
DLTVRL TY++IKA VKAA++G MKG+LGYTED+VVS+DFNGEVC+SVFDAKAGIAL
Sbjct: 241 DLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIAL 300
Query: 302 NKNFVKLVTWYDNEYGYSCRVLDLIQYM 329
N NFVKLV+WYDNE GYS +VLDLI ++
Sbjct: 301 NDNFVKLVSWYDNETGYSNKVLDLIAHI 328
>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso;
irreversible inhibitor, protein-ligand complex,X-RAY,
glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma
cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A*
1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*
Length = 359
Score = 646 bits (1669), Expect = 0.0
Identities = 179/358 (50%), Positives = 241/358 (67%), Gaps = 21/358 (5%)
Query: 1 MAYKIGINGFGRIGRLVLREALHRNTP-----VVGINDPHLSVDYLAYMLKYDSTHGRFK 55
M K+GINGFGRIGR+V + VV + D + +Y AY ++YD+ HG+FK
Sbjct: 1 MPIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFK 60
Query: 56 GDVKT--------EGNNIVVNGKKI-AVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTA 106
+V T + + +VVNG +I V + P ++PW + G EY++ESTG+F K A
Sbjct: 61 YEVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAA 120
Query: 107 SAHLKGGAKKVIITAPSK-DAPMFVCGVNLDKYDPS-HSVVSNASCTTNCLAPLAKV-IH 163
HL+GGA+KV+I+AP+ A V GVN +Y+PS H VVSNASCTTNCLAP+ V +
Sbjct: 121 EGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVK 180
Query: 164 DNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLE 223
+ F + GLMTT+H+ TATQKTVD S K WR GR A NIIP++TGAAKAV VIP +
Sbjct: 181 EGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQ 240
Query: 224 GKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSD 283
GKLTGM+FRVP P+VSVVDLT D + EI A +K AS+ MKGILGYT++E+VS+D
Sbjct: 241 GKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSAD 300
Query: 284 FNGEVCSSVFDAKAGIALN----KNFVKLVTWYDNEYGYSCRVLDLIQYMKSKDTGSK 337
F + SS++D+KA + N + F K+V+WYDNE+GYS RV+DL+++M SKD ++
Sbjct: 301 FINDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMASKDRSAR 358
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase;
microspectrophotometry, reaction intermediate,
dehydrogenase phosphate binding site; HET: G3H NAD;
1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3
d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O*
1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*
Length = 334
Score = 582 bits (1502), Expect = 0.0
Identities = 180/334 (53%), Positives = 234/334 (70%), Gaps = 5/334 (1%)
Query: 2 AYKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKT 60
A K+GINGFGRIGR V R AL + VV +ND + LA++LKYDS HGR +V
Sbjct: 1 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDL-TDANTLAHLLKYDSVHGRLDAEVSV 59
Query: 61 EGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIIT 120
GNN+VVNGK+I V + PE + W + G + +VESTG F ++ A+ HL+ GAKKVII+
Sbjct: 60 NGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIIS 119
Query: 121 APSKDA-PMFVCGVNLDKYDPS-HSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVHA 178
AP+K+ V GVN DKYDP H V+SNASCTTNCLAP AKV+H+ F I+ G+MTTVH+
Sbjct: 120 APAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHS 179
Query: 179 VTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPNV 238
T Q+ +D P K R R A ++IIP +TGAAKAVA V+P+L+GKL GMA RVP PNV
Sbjct: 180 YTNDQRILDLPHKD-LRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNV 238
Query: 239 SVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAG 298
SVVDL L +VT +E+ A +KAA++G +KGIL Y+E+ +VS D+NG SS DA +
Sbjct: 239 SVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALST 298
Query: 299 IALNKNFVKLVTWYDNEYGYSCRVLDLIQYMKSK 332
+ ++ VK+V+WYDNE GYS RV+DL Y+ SK
Sbjct: 299 MVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASK 332
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1;
oxidoreductase, glycolysis, rossmann fold; HET: NAD;
1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O*
3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q*
3ksz_O*
Length = 338
Score = 563 bits (1454), Expect = 0.0
Identities = 152/336 (45%), Positives = 206/336 (61%), Gaps = 12/336 (3%)
Query: 1 MAYKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVK 59
MA K+ INGFGRIGRL R VV +ND D LA++LKYD+ GRF G+V+
Sbjct: 3 MAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDL-TDDDMLAHLLKYDTMQGRFTGEVE 61
Query: 60 TEGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119
VNGK++ F + ++PW + ++E TG + KD A AH++ GAKKV+I
Sbjct: 62 VVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 121
Query: 120 TAPSK-DAPMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVHA 178
+AP+ D V N + D S +VVS ASCTTN LAP+AKV++D+F ++EGLMTT+HA
Sbjct: 122 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHA 181
Query: 179 VTATQKTVDAPSKKM-WRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPN 237
T Q T DAP +K R R A +NIIP STGAAKA+ KVIP+++GKL G A RVPV
Sbjct: 182 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 241
Query: 238 VSVVDLTVRLC-CDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAK 296
S+ +LTV L DVT +++ +K AS GYTEDE+VSSD G S+FDA
Sbjct: 242 GSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDAT 297
Query: 297 AGIAL---NKNFVKLVTWYDNEYGYSCRVLDLIQYM 329
+ ++ VK+ WYDNE Y+ +++ + Y+
Sbjct: 298 QTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYL 333
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis,
oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A
{Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O*
1vc2_A*
Length = 331
Score = 559 bits (1443), Expect = 0.0
Identities = 166/331 (50%), Positives = 214/331 (64%), Gaps = 5/331 (1%)
Query: 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGN 63
K+GINGFGRIGR V R R V IND LA++LKYDS + RF G+V +
Sbjct: 2 KVGINGFGRIGRQVFRILHSRGVEVALINDL-TDNKTLAHLLKYDSIYHRFPGEVAYDDQ 60
Query: 64 NIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPS 123
+ V+GK I P+EIPW++ G ++ESTGVF D A AHL+GGAKKVIITAP+
Sbjct: 61 YLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPA 120
Query: 124 KDA-PMFVCGVNLDKYDPS-HSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVHAVTA 181
K V GVN + YDPS H ++SNASCTTN LAP+ KV+ + F + + LMTTVH+ T
Sbjct: 121 KGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTN 180
Query: 182 TQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPNVSVV 241
Q+ +D P K R R A NIIP +TGAAKA A V+P L+G+ GMA RVP S+
Sbjct: 181 DQRLLDLPHKD-LRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSIS 239
Query: 242 DLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIAL 301
D+T L +VT +E+ A +KAA++GP+KGIL YTEDE+V D + SS+ DAK AL
Sbjct: 240 DITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKAL 299
Query: 302 NKNFVKLVTWYDNEYGYSCRVLDLIQYMKSK 332
N VK+ WYDNE+GY+ RV DL++ + K
Sbjct: 300 G-NMVKVFAWYDNEWGYANRVADLVELVLRK 329
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural
genomics, national institute of allergy AN infectious
diseases; 2.55A {Bacillus anthracis}
Length = 345
Score = 558 bits (1441), Expect = 0.0
Identities = 155/340 (45%), Positives = 221/340 (65%), Gaps = 5/340 (1%)
Query: 1 MAYKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVK 59
++ INGFGRIGR+V R+A+ +V IN + LA+++KYD+ HG+F G V+
Sbjct: 3 AMTRVAINGFGRIGRMVFRQAIKESAFEIVAINAS-YPSETLAHLIKYDTVHGKFDGTVE 61
Query: 60 TEGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119
++++V+GK I + P+E+PW+ G E ++E+TG F +K+ A H++ GAKKVI+
Sbjct: 62 AFEDHLLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVIL 121
Query: 120 TAPSKDA-PMFVCGVNLDKYDPS-HSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVH 177
TAP K+ V GVN D+ D + H+V+SNASCTTNCLAP+ KV+ + F I GLMTTVH
Sbjct: 122 TAPGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQFGIENGLMTTVH 181
Query: 178 AVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPN 237
A T QK +D P K R R Q+IIP +TGAAKA+AKV+P L GKL GMA RVP PN
Sbjct: 182 AYTNDQKNIDNPHKD-LRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTPN 240
Query: 238 VSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKA 297
VS+VDL V + DVT + I K + G +KGI+ ++E+ +VS DFN S++ D +
Sbjct: 241 VSLVDLVVDVKRDVTVEAINDAFKTVANGALKGIVEFSEEPLVSIDFNTNTHSAIIDGLS 300
Query: 298 GIALNKNFVKLVTWYDNEYGYSCRVLDLIQYMKSKDTGSK 337
+ + VK++ WYDNE+GYS RV+DL+ + + +
Sbjct: 301 TMVMGDRKVKVLAWYDNEWGYSRRVVDLVTLVVDELAKQE 340
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold,
protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A
{Synechococcus SP} PDB: 2duu_A
Length = 380
Score = 559 bits (1444), Expect = 0.0
Identities = 157/339 (46%), Positives = 216/339 (63%), Gaps = 8/339 (2%)
Query: 1 MAYKIGINGFGRIGRLVLREALHRNTP---VVGINDPHLSVDYLAYMLKYDSTHGRFKGD 57
M ++ INGFGRIGR LR R VV IN+ A++L+YDS GRF D
Sbjct: 1 MTIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNT-SDARTAAHLLEYDSVLGRFNAD 59
Query: 58 VKTEGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKV 117
+ + N+I VNGK + + P +PW + + ++ESTGVF T + AS H++ GAKKV
Sbjct: 60 ISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKV 119
Query: 118 IITAPSK--DAPMFVCGVNLDKYDPS-HSVVSNASCTTNCLAPLAKVIHDNFEILEGLMT 174
+ITAP K +V GVN +Y +V+SNASCTTNCLAP+AKV+HDNF I++G MT
Sbjct: 120 LITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMT 179
Query: 175 TVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVP 234
T H+ T Q+ +DA + R R A NI+P +TGAAKAVA VIP+L+GKL G+A RVP
Sbjct: 180 TTHSYTLDQRILDASHRD-LRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVP 238
Query: 235 VPNVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFD 294
PNVSVVDL V++ +++ ++ ASQ MKGI+ Y++ +VSSDF G SS+ D
Sbjct: 239 TPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVD 298
Query: 295 AKAGIALNKNFVKLVTWYDNEYGYSCRVLDLIQYMKSKD 333
+ + ++ + VK++ WYDNE+GYS RV+DL + K
Sbjct: 299 SSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARKS 337
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid,
decode, UW, SBRI, LYME disease, non-hodgkin lymphomas,
cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}
Length = 356
Score = 558 bits (1441), Expect = 0.0
Identities = 163/337 (48%), Positives = 218/337 (64%), Gaps = 10/337 (2%)
Query: 1 MAYKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKT 60
+ K+ INGFGRIGR V + A R +V IND LA++LKYDST G + V++
Sbjct: 20 GSMKLAINGFGRIGRNVFKIAFERGIDIVAINDL-TDPKTLAHLLKYDSTFGVYNKKVES 78
Query: 61 EGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASA----HLK-GGAK 115
IVV+G++I + + P+ +PW++ G + ++ESTGVF + + H+ GAK
Sbjct: 79 RDGAIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAK 138
Query: 116 KVIITAPSKDA-PMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMT 174
KVI+T P+KD V GVN + VSNASCTTNCLAPLAKV+H++F I +GLMT
Sbjct: 139 KVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESFGIEQGLMT 198
Query: 175 TVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVP 234
TVHA T Q+ +D P R R A +IIP STGAAKAV V+P+L+GKL G + RVP
Sbjct: 199 TVHAYTNDQRILDLPHSD-LRRARAAALSIIPTSTGAAKAVGLVLPELKGKLNGTSMRVP 257
Query: 235 VPNVSVVDLTVRLC-CDVTYDEIKAKVKAASQGP-MKGILGYTEDEVVSSDFNGEVCSSV 292
VP S+VDLTV+L DVT +EI + ++ AS+ P +KGILGYTED +VSSD G SS+
Sbjct: 258 VPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTEDPIVSSDIKGNSHSSI 317
Query: 293 FDAKAGIALNKNFVKLVTWYDNEYGYSCRVLDLIQYM 329
D + L F K+++WYDNE+GYS RV+DL Q +
Sbjct: 318 VDGLETMVLENGFAKILSWYDNEFGYSTRVVDLAQKL 354
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold,
oxidoreductase-protein binding complex; HET: NAD; 2.20A
{Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Length = 339
Score = 554 bits (1431), Expect = 0.0
Identities = 157/341 (46%), Positives = 216/341 (63%), Gaps = 8/341 (2%)
Query: 1 MAYKIGINGFGRIGRLVLREALHRNTP---VVGINDPHLSVDYLAYMLKYDSTHGRFKGD 57
M ++ INGFGRIGR LR R VV IN+ A++L+YDS GRF D
Sbjct: 1 MTIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNT-SDARTAAHLLEYDSVLGRFNAD 59
Query: 58 VKTEGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKV 117
+ + N+I VNGK + + P +PW + + ++ESTGVF T + AS H++ GAKKV
Sbjct: 60 ISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKV 119
Query: 118 IITAPSK--DAPMFVCGVNLDKYDPS-HSVVSNASCTTNCLAPLAKVIHDNFEILEGLMT 174
+ITAP K +V GVN +Y +V+SNASCTTNCLAP+AKV+HDNF I++G MT
Sbjct: 120 LITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMT 179
Query: 175 TVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVP 234
T H+ T Q+ +DA + R R A NI+P +TGAAKAVA VIP+L+GKL G+A RVP
Sbjct: 180 TTHSYTLDQRILDASHRD-LRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVP 238
Query: 235 VPNVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFD 294
PNVSVVDL V++ +++ ++ ASQ MKGI+ Y++ +VSSDF G SS+ D
Sbjct: 239 TPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVD 298
Query: 295 AKAGIALNKNFVKLVTWYDNEYGYSCRVLDLIQYMKSKDTG 335
+ + ++ + VK++ WYDNE+GYS RV+DL + K
Sbjct: 299 SSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARKWAA 339
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold,
GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A
{Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O*
2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A*
3k2b_A* 3rvd_A* 2pkq_O*
Length = 337
Score = 554 bits (1430), Expect = 0.0
Identities = 154/334 (46%), Positives = 207/334 (61%), Gaps = 7/334 (2%)
Query: 4 KIGINGFGRIGRLVLREALHRNTP---VVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKT 60
K+ INGFGRIGR LR R VV IND V +++LKYDS G F DVKT
Sbjct: 3 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDT-GGVKQASHLLKYDSILGTFDADVKT 61
Query: 61 EGNN-IVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119
G++ I V+GK I V P +PW G + ++E TGVF +D A HL+ GAKKV+I
Sbjct: 62 AGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLI 121
Query: 120 TAPSKDA-PMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVHA 178
TAP K P +V GVN + Y + +++SNASCTTNCLAP KV+ F I++G MTT H+
Sbjct: 122 TAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHS 181
Query: 179 VTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPNV 238
T Q+ +DA + R R A NI+P STGAAKAVA V+P+L+GKL G+A RVP PNV
Sbjct: 182 YTGDQRLLDASHRD-LRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNV 240
Query: 239 SVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAG 298
SVVDL V++ +E+ A + ++ +KGIL ++ +VS DF SS D+
Sbjct: 241 SVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLT 300
Query: 299 IALNKNFVKLVTWYDNEYGYSCRVLDLIQYMKSK 332
+ + + VK++ WYDNE+GYS RV+DL + +K
Sbjct: 301 MVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANK 334
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase,
structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex
aeolicus}
Length = 342
Score = 550 bits (1419), Expect = 0.0
Identities = 164/343 (47%), Positives = 229/343 (66%), Gaps = 14/343 (4%)
Query: 1 MAYKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVK 59
MA K+GINGFGRIGR R + R +V IND +LA++LKYDS HG FKG V+
Sbjct: 1 MAIKVGINGFGRIGRSFFRASWGREEIEIVAINDL-TDAKHLAHLLKYDSVHGIFKGSVE 59
Query: 60 TEGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119
+ ++IVV+GK+I VF + P +IPW G + ++E+TGVF+ ++ AS HL+GGAKKVII
Sbjct: 60 AKDDSIVVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVII 119
Query: 120 TAPSKDA-PMFVCGVNLDKYDPS-HSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVH 177
TAP+K+ V GVN +KY+P H+++SNASCTTNCLAP KV+++ F + +G M TVH
Sbjct: 120 TAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTVH 179
Query: 178 AVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPN 237
A T Q+ +D P K +R R A NI+P +TGAAKA+ +VIP+L+GKL G A RVPVP+
Sbjct: 180 AYTNDQRLLDLPHKD-FRRARAAAINIVPTTTGAAKAIGEVIPELKGKLDGTARRVPVPD 238
Query: 238 VSVVDLTVRLC-CDVTYDEIKAKVKAASQG-------PMKGILGYTEDEVVSSDFNGEVC 289
S++DLTV + + +E+ K + A+Q +K IL Y ED +VS+D G
Sbjct: 239 GSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCEDPIVSTDIVGNPH 298
Query: 290 SSVFDAKAGIALNKNFVKLVTWYDNEYGYSCRVLDLIQYMKSK 332
S++FDA ++ N V + WYDNE+GYSCR+ DL+ Y+ +
Sbjct: 299 SAIFDAPLTQVID-NLVHIAAWYDNEWGYSCRLRDLVIYLAER 340
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.1
Length = 332
Score = 541 bits (1396), Expect = 0.0
Identities = 157/330 (47%), Positives = 221/330 (66%), Gaps = 6/330 (1%)
Query: 4 KIGINGFGRIGRLVLREALHRNTP---VVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKT 60
++ INGFGRIGRLV R R P VV IND LA++LKYDS H +F G V+
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDL-TDTKTLAHLLKYDSVHKKFPGKVEY 60
Query: 61 EGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIIT 120
N+++V+GK+I VF + P ++PW G ++++ESTGVF+ ++ A HL+ GAKKVIIT
Sbjct: 61 TENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIIT 120
Query: 121 APSKDA-PMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVHAV 179
AP+K V G N D+ P H+++S ASCTTN +AP+ KV+H+ F I+ G++TTVH+
Sbjct: 121 APAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVHSY 180
Query: 180 TATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPNVS 239
T Q+ +D P K R R A NIIP +TGAAKAVA V+P+++GKL GMA RVP P+ S
Sbjct: 181 TNDQRVLDLPHKD-LRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPDGS 239
Query: 240 VVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGI 299
+ DLTV + + T +E+ A +K A++G +KGI+GY ++ +VSSD G S +FDA
Sbjct: 240 ITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTFSGIFDATITN 299
Query: 300 ALNKNFVKLVTWYDNEYGYSCRVLDLIQYM 329
+ VK+ +WYDNEYGYS RV+D ++ +
Sbjct: 300 VIGGKLVKVASWYDNEYGYSNRVVDTLELL 329
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural
genomics, PSI, protein structure initiative; HET: NAD;
2.40A {Brucella melitensis biovar ABORTUS2308} PDB:
3l0d_A*
Length = 335
Score = 519 bits (1339), Expect = 0.0
Identities = 151/333 (45%), Positives = 214/333 (64%), Gaps = 6/333 (1%)
Query: 1 MAYKIGINGFGRIGRLVLREALHRNTP---VVGINDPHLSVDYLAYMLKYDSTHGRFKGD 57
MA ++ INGFGRIGR +LR + VV IND V+ A++L+YDS HGRF +
Sbjct: 1 MAVRVAINGFGRIGRNILRAIVESGRTDIQVVAINDLG-PVETNAHLLRYDSVHGRFPKE 59
Query: 58 VKTEGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKV 117
V+ G+ I V I V P E+PW + + +E TG+F ++D A+ HL+ GAK+V
Sbjct: 60 VEVAGDTIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRV 119
Query: 118 IITAPSKDA-PMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTV 176
I++AP+ A V GVN DK H V+SNASCTTNCLAP+A+V++D I +G MTT+
Sbjct: 120 IVSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCLAPVAQVLNDTIGIEKGFMTTI 179
Query: 177 HAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVP 236
H+ T Q T+D K ++R R A ++IP STGAAKAV V+P+L+GKL G+A RVP P
Sbjct: 180 HSYTGDQPTLDTMHKDLYR-ARAAALSMIPTSTGAAKAVGLVLPELKGKLDGVAIRVPTP 238
Query: 237 NVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAK 296
NVSVVDLT + T +E+ ++ A+ G +KGILGYT++++VS DFN + SSVF
Sbjct: 239 NVSVVDLTFIAKRETTVEEVNNAIREAANGRLKGILGYTDEKLVSHDFNHDSHSSVFHTD 298
Query: 297 AGIALNKNFVKLVTWYDNEYGYSCRVLDLIQYM 329
++ V++++WYDNE+G+S R+ D +
Sbjct: 299 QTKVMDGTMVRILSWYDNEWGFSSRMSDTAVAL 331
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase,
hydride transfer, aldehyde dehydrogenase, PY
biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A*
2x5k_O*
Length = 339
Score = 500 bits (1291), Expect = e-179
Identities = 117/338 (34%), Positives = 187/338 (55%), Gaps = 8/338 (2%)
Query: 1 MAYKIGINGFGRIGRLVLREALHRNTP----VVGINDPHLSVDYLAYMLKYDSTHGRFKG 56
M ++ INGFGRIGR V+R VV IN+ +A++LKYD++HGRF
Sbjct: 1 MTVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELA-DAAGMAHLLKYDTSHGRFAW 59
Query: 57 DVKTEGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKK 116
+V+ E + + V I V + + +PW + G + +++ TGV+ +++ AH+ GAKK
Sbjct: 60 EVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKK 119
Query: 117 VIITAPSKDA--PMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMT 174
V+ + P + V GVN D+ H +VSNASCTTNC+ P+ K++ D + I G +T
Sbjct: 120 VLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTVT 179
Query: 175 TVHAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVP 234
T+H+ Q+ +DA + R R A+Q+IIP T A + + P + +A RVP
Sbjct: 180 TIHSAMHDQQVIDAYHPDLRR-TRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVP 238
Query: 235 VPNVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFD 294
NV+ +DL+V + V +E+ ++ A+QG GI+ YTE +VS DFN + S++ D
Sbjct: 239 TINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVD 298
Query: 295 AKAGIALNKNFVKLVTWYDNEYGYSCRVLDLIQYMKSK 332
+ +K + W DNE+G++ R+LD M +
Sbjct: 299 GTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMATV 336
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway,
oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A
{Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB:
3gnq_A*
Length = 335
Score = 489 bits (1262), Expect = e-175
Identities = 145/335 (43%), Positives = 199/335 (59%), Gaps = 9/335 (2%)
Query: 4 KIGINGFGRIGRLVLREALHRNTP----VVGINDPHLSVDYLAYMLKYDSTHGRFKGDVK 59
++ ING+GRIGR +LR +V IND A++ +YD+ HG+F G V
Sbjct: 3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLG-DPKTNAHLTRYDTAHGKFPGTVS 61
Query: 60 TEGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119
G+ +VVNG KI V P ++PW + ++E TG F TK+ A AH+KGGAKKVII
Sbjct: 62 VNGSYMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVII 121
Query: 120 TAPSKDA--PMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVH 177
+AP V GVN + +V+SNASCTTNCLAPL K ++D + +GLMTTVH
Sbjct: 122 SAPGGADVDATVVYGVNHGTLKSTDTVISNASCTTNCLAPLVKPLNDKLGLQDGLMTTVH 181
Query: 178 AVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPN 237
A T Q D + + R R A ++IP TGAA AV V+P+L+GKL G A RVP N
Sbjct: 182 AYTNNQVLTDVYHEDLRR-ARSATMSMIPTKTGAAAAVGDVLPELDGKLNGYAIRVPTIN 240
Query: 238 VSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKA 297
VS+VDL+ + T +E+ +KAAS+G +KGIL Y + +VS D+N + SS DA
Sbjct: 241 VSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNTEPLVSVDYNHDPASSTVDASL 300
Query: 298 GIALNKNFVKLVTWYDNEYGYSCRVLDLIQYMKSK 332
++ VK+ +WYDNE+G+S R+LD + S
Sbjct: 301 -TKVSGRLVKVSSWYDNEWGFSNRMLDTTVALMSA 334
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase,
oxidoreductase; HET: NAP; 2.10A {Methanothermus
fervidus} SCOP: c.2.1.3 d.81.1.1
Length = 337
Score = 360 bits (926), Expect = e-124
Identities = 57/345 (16%), Positives = 108/345 (31%), Gaps = 41/345 (11%)
Query: 4 KIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEG 62
+ ING+G +G+ V + + V+G++ D+ A M + + V
Sbjct: 3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSK--TRPDFEARM----ALKKGYDLYVAIPE 56
Query: 63 NNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAP 122
+ I V + A+ +++ T + + G K +
Sbjct: 57 RVKLFEKAGIEVAGTVDD-----MLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGE 111
Query: 123 SKDAP--MFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVHAVT 180
+ F N ++ SC T L K +HD+F I + V
Sbjct: 112 KHEDIGLSFNSLSNYEESY-GKDYTRVVSCNTTGLCRTLKPLHDSFGIKKVRAVIVRRGA 170
Query: 181 ATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVA-KVIPDLEGKLTGMAFRVPVPNVS 239
+ P IIP V L+ + MA VP +
Sbjct: 171 DPAQVSKGPI-----------NAIIPNPPKLPSHHGPDVKTVLDINIDTMAVIVPTTLMH 219
Query: 240 VVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVSSDFNGEVCSSVFDAKAGI 299
++ V + T D+I + + IL ED + S+ E + ++ +
Sbjct: 220 QHNVMVEVEETPTVDDIIDVFEDTP----RVILISAEDGLTSTAEIMEYAKELGRSRNDL 275
Query: 300 ALNKNFVKLVTWYDNEYGYSCRV----------LDLIQYMKSKDT 334
+ + +T DNE Y V +D ++ + +
Sbjct: 276 FEIPVWRESITVVDNEIYYMQAVHQESDIVPENVDAVRAILEMEE 320
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde
3-phosphate binding, alpha and beta proteins (A/B)
class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus
jannaschii}
Length = 343
Score = 320 bits (821), Expect = e-108
Identities = 57/325 (17%), Positives = 108/325 (33%), Gaps = 27/325 (8%)
Query: 1 MAYKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVK 59
M K+ ING+G IG+ V + + V+G+ D+ A + + +K V
Sbjct: 1 MPAKVLINGYGSIGKRVADAVSMQDDMEVIGVTK--TKPDFEARL----AVEKGYKLFVA 54
Query: 60 TEGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119
N V + + + +I A+ +V+ K K K I+
Sbjct: 55 IPDNERVKLFEDAGIPVEGTILDIIE---DADIVVDGAPKKIGKQNLENIYKPHKVKAIL 111
Query: 120 TAPSKDA---PMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTV 176
K F + ++ V SC T L + I+ +I + + V
Sbjct: 112 QGGEKAKDVEDNFNALWSYNRCY-GKDYVRVVSCNTTGLCRILYAINSIADIKKARIVLV 170
Query: 177 HAVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVP 236
P N + + V V+P+ EGK+ A VP
Sbjct: 171 RRAADPNDDKTGPV-------NAITPNPVTVPSHHGPDVVSVVPEFEGKILTSAVIVPTT 223
Query: 237 NVSVVDLTVRLCCDVTYDEIKAKVKAASQ-GPMKGILGYTEDEVVSSD-----FNGEVCS 290
+ + L V + DV+ D+I +K + ++ G++ + +
Sbjct: 224 LMHMHTLMVEVDGDVSRDDILEAIKKTPRIITVRAEDGFSSTAKIIEYGRDLGRLRYDIN 283
Query: 291 SVFDAKAGIALNKNFVKLVTWYDNE 315
+ + I + +N + L+ E
Sbjct: 284 ELVVWEESINVLENEIFLMQAVHQE 308
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD,
oxidoreductase, structural genomics; HET: NAD; 2.00A
{Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Length = 334
Score = 291 bits (746), Expect = 3e-97
Identities = 58/324 (17%), Positives = 101/324 (31%), Gaps = 34/324 (10%)
Query: 1 MAYKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVK 59
M K+G+NG+G IG+ V + + ++GI D+ AY K +
Sbjct: 1 MKVKVGVNGYGTIGKRVAYAVTKQDDMELIGITK--TKPDFEAYRAKELGIPVYAASEEF 58
Query: 60 TEGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119
G ++ + + IV++T + K G K +
Sbjct: 59 IP--RFEKEGFEV-------AGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQ 109
Query: 120 TAPSKDAP--MFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVH 177
D FV N + + V SC T L I + + + +M
Sbjct: 110 GGEKADVAEVSFVAQANYEAALG-KNYVRVVSCNTTGLVRTLSAIREYADYVYAVMIRRA 168
Query: 178 AVTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPN 237
A K R A + + + V VIP + MAF VP
Sbjct: 169 ADPNDTK----------RGPINAIKPTVEVPSHHGPDVQTVIP---INIETMAFVVPTTL 215
Query: 238 VSVVDLTVRLCCDVTYDEIKAKVKAASQGPM----KGILGYTEDEVVSSD--FNGEVCSS 291
+ V + V L +T D++ + ++ + KG + + D
Sbjct: 216 MHVHSVMVELKKPLTKDDVIDIFENTTRVLLFEKEKGFDSTAQIIEFARDLHREWNNLYE 275
Query: 292 VFDAKAGIALNKNFVKLVTWYDNE 315
+ K I + N + + E
Sbjct: 276 IAVWKESINIKGNRLFYIQAVHQE 299
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea,
hyperthermophIle, GAPDH, hyperthermophilic dehydrog
oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP:
c.2.1.3 d.81.1.1
Length = 340
Score = 197 bits (502), Expect = 1e-60
Identities = 45/323 (13%), Positives = 98/323 (30%), Gaps = 35/323 (10%)
Query: 4 KIGINGFGRIGRLVLREAL-HRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEG 62
+ +NG+G IG+ V + + +VG+ S +Y A++
Sbjct: 3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAK--TSPNYEAFIAHRRGIR----------- 49
Query: 63 NNIVVNGKKIAVFQKMKPE---EIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119
I V + I F++ + ++ +V++T +L+ +
Sbjct: 50 --IYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQ 107
Query: 120 TAPSKDAPMFVCGVNLDKYDP-SHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVHA 178
+ + + + SC T L ++ ++ + T V
Sbjct: 108 GGEKAEVADISFSALCNYNEALGKKYIRVVSCNTTALLRTICTVNKVSKVEKVRATIVRR 167
Query: 179 VTATQKTVDAPSKKMWRDGRGANQNIIPASTGAAKAVAKVIPDLEGKLTGMAFRVPVPNV 238
++ P + + +P+ AK V VI + + MA P +
Sbjct: 168 AADQKEVKKGPI-----NSLVPDPATVPSHH--AKDVNSVIRN--LDIATMAVIAPTTLM 218
Query: 239 SVVDLTVRLCCDVTYDEIKAKVKAASQ----GPMKGILGYTEDEVVSSDFN--GEVCSSV 292
+ + + L V +I + ++ + E V+ D V
Sbjct: 219 HMHFINITLKDKVEKKDILSVLENTPRIVLISSKYDAEATAELVEVARDLKRDRNDIPEV 278
Query: 293 FDAKAGIALNKNFVKLVTWYDNE 315
I + + V L+ E
Sbjct: 279 MIFSDSIYVKDDEVMLMYAVHQE 301
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.5 bits (154), Expect = 5e-11
Identities = 59/389 (15%), Positives = 99/389 (25%), Gaps = 165/389 (42%)
Query: 31 INDPHL--SVDYLA----------------YML---KYDSTHGRFKGDVK---TEGNNIV 66
+ +P DYL Y++ T G + +K +V
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 67 VNGKKIAVFQKMKPEEIPWSQTGAE-------------YI-VESTGVFKTKDTASAHLKG 112
AV I + + +I V + + L+
Sbjct: 279 T-----AVA-------IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 113 GAKKVIITAPSKDAPMF-VCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIH-------D 164
+ + PS PM + + ++ V+ TN P K +
Sbjct: 327 -SLENNEGVPS---PMLSISNLTQEQVQ---DYVN----KTNSHLPAGKQVEISLVNGAK 375
Query: 165 NF------EILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPAS---------- 208
N + L GL T+ A PS G +Q+ IP S
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKA-------PS--------GLDQSRIPFSERKLKFSNRF 420
Query: 209 --TGA-------AKAVAKVIPDLEGK---LTGMAFRVPV-------------PNV--SVV 241
+ A + DL ++PV ++ +V
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV 480
Query: 242 DLTVRLCCDVTYDEIKAKVKAASQ----GP--MKGILGYTEDEVVSSDFNGEVCSSVFDA 295
D +RL A+ GP G+ G + D
Sbjct: 481 DCIIRLPVKWE----TTTQFKATHILDFGPGGASGL--------------GVLTHRNKDG 522
Query: 296 K------AGIALNKNFVKLVTWYDNEYGY 318
AG L+ N D++YG+
Sbjct: 523 TGVRVIVAG-TLDIN-------PDDDYGF 543
Score = 49.7 bits (118), Expect = 1e-06
Identities = 66/390 (16%), Positives = 118/390 (30%), Gaps = 137/390 (35%)
Query: 17 VLREALHRNTP-----VVGINDPHLSVDYLAYMLKY------DSTHGRFKGDVKT----- 60
L+E ++ P ++P + + L Y S G+F +
Sbjct: 32 QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF 91
Query: 61 -----EGNNI--------------VVNGKKI------AVFQKMKPEEIPWS-------QT 88
EGN+I +V K++ A +P + +
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 89 GA--------------EYIVESTGVFKT--------KDTASAHLKGGAKKVIITAPSKDA 126
G +Y E +++T ++ L +I
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE-----LIRTTLDAE 206
Query: 127 PMFVCGVN----LDKYD--PSHSVVSNA--SCTTNCLAPLAKVIHDNFEILEGLMTTVH- 177
+F G+N L+ P + + SC PL I G++ H
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYLLSIPISC------PL---------I--GVIQLAHY 249
Query: 178 AVTATQKTVDAPSKKMWRDGRGA---NQNIIPASTGAAKAVAKVIPDLEG---KLTGMAF 231
VTA K + ++ +GA +Q ++ A A A K + F
Sbjct: 250 VVTA--KLLGFTPGELRSYLKGATGHSQGLVTA---VAIAETDSWESFFVSVRKAITVLF 304
Query: 232 RVPV------PNVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMKGILGYTEDEVVS--SD 283
+ V PN S+ + D ++ S PM I T+++V +
Sbjct: 305 FIGVRCYEAYPNTSLPPSILE-------DSLENNEGVPS--PMLSISNLTQEQVQDYVNK 355
Query: 284 FNGEVCSSVFDAKAGIAL-N--KNFVKLVT 310
N + + + I+L N KN V V+
Sbjct: 356 TNSHLPA---GKQVEISLVNGAKNLV--VS 380
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural
genomics, PSI-2, Pro structure initiative; HET: MSE
AMP; 1.79A {Escherichia coli k-12}
Length = 140
Score = 31.4 bits (72), Expect = 0.19
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 7 INGFGRIGRLVLREALHRNTPVVGI-NDP 34
+ G+GR+G L+ + L + P+V I
Sbjct: 12 LVGYGRVGSLLGEKLLASDIPLVVIETSR 40
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD;
1.90A {Archaeoglobus fulgidus}
Length = 236
Score = 32.4 bits (73), Expect = 0.19
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPH 35
+G+ G+G IG+ + + I D
Sbjct: 2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVR 33
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 31.2 bits (71), Expect = 0.25
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 9 GFGRIGRLVLREALHRNTPVVGI-NDPHLSVDYLA 42
G + + + R V I N P + L
Sbjct: 10 GHSILAINTILQLNQRGQNVTVISNLPEDDIKQLE 44
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 31.9 bits (73), Expect = 0.32
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 5 IGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYML 45
+G GRIG VLR + + D H + + L
Sbjct: 194 VGTVAAGRIGLAVLRRLAPFDVHLHY-TDRHRLPESVEKEL 233
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL;
1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A*
1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A*
2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B*
3b9j_A* 1fiq_A*
Length = 1332
Score = 31.8 bits (72), Expect = 0.42
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 131 CGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVHAVTATQK 184
C V L KYD + + S CLAP+ + H +EG+ +T + Q+
Sbjct: 51 CTVMLSKYDRLQDKIIHFSANA-CLAPICTLHHVAVTTVEGIGSTKTRLHPVQE 103
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor
ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A
{Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3
PDB: 1dap_A* 2dap_A* 3dap_A*
Length = 320
Score = 31.4 bits (71), Expect = 0.45
Identities = 6/22 (27%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 4 KIGINGFGRIGRLVLREALHRN 25
++ I G+G +GR V + + +
Sbjct: 5 RVAIVGYGNLGRSVE-KLIAKQ 25
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 30.5 bits (69), Expect = 0.56
Identities = 10/32 (31%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 7 INGFGRIGRLVLREALHRN-TPVVGI-NDPHL 36
I G GRIG E R +GI
Sbjct: 44 ILGMGRIGTGAYDELRARYGKISLGIEIREEA 75
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 30.7 bits (70), Expect = 0.70
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 5 IGINGFGRIGRLVLREALHRNTPVVGINDPH 35
IG G GRIG+L+L+ ++ +D
Sbjct: 167 IGTVGAGRIGKLLLQRLKPFGCNLLY-HDRL 196
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 30.6 bits (70), Expect = 0.71
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 5 IGINGFGRIGRLVLREALHRNTPVVGINDPHLSVD 39
+GI G G IG+ + R + + H V+
Sbjct: 149 VGILGMGAIGKAIARRLIPFGVKLYY-WSRHRKVN 182
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH,
oxidoreductase; 1.80A {Staphylococcus aureus}
Length = 243
Score = 30.3 bits (69), Expect = 0.77
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 4 KIGINGFGRIGRLVLREALHRNTPVVG 30
KI + G+G + + V R A + +VG
Sbjct: 5 KILLIGYGAMNQRVARLAEEKGHEIVG 31
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 30.2 bits (69), Expect = 0.91
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 5 IGINGFGRIGRLVLREALHRNTPVVGINDPHLSVD 39
IGI GFGRIG V + A ++ DP+ + +
Sbjct: 145 IGIIGFGRIGYQVAKIANALGMNILL-YDPYPNEE 178
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 30.4 bits (69), Expect = 1.0
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 5 IGINGFGRIGRLVLREALHRNTPVVGINDPHLSVD 39
+G+ G GRIG+LV + VV DP++S
Sbjct: 145 VGVVGLGRIGQLVAQRIAAFGAYVVA-YDPYVSPA 178
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG,
PSI-2, GFO/IDH/MO family, protein structure initiative;
HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Length = 304
Score = 29.9 bits (67), Expect = 1.1
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 4 KIGINGFGRIGRLVLREALHRN 25
+ I G+G IGR L +AL
Sbjct: 11 RAAIVGYGNIGRYAL-QALREA 31
>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP
complex, amino-acid biosynthesis; HET: NAP; 2.20A
{Candida albicans}
Length = 381
Score = 30.0 bits (68), Expect = 1.1
Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 25/110 (22%)
Query: 144 VVSNASCTTNCLAPLAKVIHDNFEILEGL-MTTVHAVTATQKTVDAPSKKMWRDGRGANQ 202
++ ++C+T L K + + F ++ L TT+ A++ + +
Sbjct: 166 IICISNCSTAGLVAPLKPLVEKFGPIDALTTTTLQAISGAGFSPGVSGMDI-------LD 218
Query: 203 NIIP-----------------ASTGAAKAVAKVIPDLEGKLTGMAFRVPV 235
NI+P A IP+ E K++ RVPV
Sbjct: 219 NIVPYISGEEDKLEWETKKILGGVNAEGTEFVPIPESEMKVSAQCNRVPV 268
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 29.6 bits (67), Expect = 1.5
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 5 IGINGFGRIGRLVLREAL 22
I G GRIG VL +
Sbjct: 167 IATIGAGRIGYRVLERLV 184
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 28.8 bits (65), Expect = 1.6
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 4 KIGINGFGRIGRLVLREALHRNTPVVGI-NDPHL 36
+ + G GR G +++E V+ + +
Sbjct: 8 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEK 41
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10
c.2.1.6
Length = 276
Score = 29.4 bits (65), Expect = 1.6
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 1 MAYKIGINGFGRIGRLVLREALHRNTPVVGI 31
M+ + G G + R E L + I
Sbjct: 1 MSLVLNFVGTGTLTR-FFLECLKDRYEIGYI 30
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 29.5 bits (67), Expect = 1.8
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 5 IGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKG-DV----- 58
+G+ G G IG++ ++ V+ D + + DS +K DV
Sbjct: 149 VGVVGTGHIGQVFMQIMEGFGAKVIT-YDIFRNPELEKKGYYVDSLDDLYKQADVISLHV 207
Query: 59 -KTEGNNIVVNGKKIAVFQKMKP 80
N ++N + IA KMK
Sbjct: 208 PDVPANVHMINDESIA---KMKQ 227
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann,
PSI, M structural genomics; 1.70A {Archaeoglobus
fulgidus}
Length = 141
Score = 28.4 bits (64), Expect = 1.8
Identities = 5/27 (18%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 9 GFGRIGRLVLREALHRNTPVVGI-NDP 34
G G ++RE V+ +
Sbjct: 13 GSEAAGVGLVRELTAAGKKVLAVDKSK 39
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2,
protein structure initiative; 2.04A {Thermotoga
maritima}
Length = 344
Score = 29.2 bits (66), Expect = 1.9
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 1 MAYKIGINGFGRIGRL-VLREALHRNTPVVGINDP 34
M+ +IG+ G GRIG + + + + I+D
Sbjct: 1 MSLRIGVIGLGRIGTIHAENLKMIDDAILYAISDV 35
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 29.1 bits (66), Expect = 2.0
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLS 37
+GI G GRIGR V +G DP +S
Sbjct: 167 TLGILGLGRIGREVATRMQSFGMKTIG-YDPIIS 199
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM
degradation, flavin reductase, diaphorase, green HAEM
binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 28.8 bits (65), Expect = 2.1
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 11 GRIGRLVLREALHRNTPVVGI 31
G+ G L +A+ V +
Sbjct: 13 GQTGLTTLAQAVQAGYEVTVL 33
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 29.1 bits (66), Expect = 2.2
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 5 IGINGFGRIGRLVLREALHRNTPVVGINDPHLS 37
+GI G GR+G+ V A V+ DP+LS
Sbjct: 171 LGIIGLGRVGQAVALRAKAFGFNVLF-YDPYLS 202
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol
dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE;
1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A*
3nto_A* 3ntq_A* 3ntr_A*
Length = 344
Score = 29.2 bits (66), Expect = 2.4
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 1 MAYKIGINGFGRIGRLVLREALHRNTP---VVGINDP 34
M+ +IG+ G G IG+ + + +V + D
Sbjct: 1 MSLRIGVIGTGAIGKEHIN-RITNKLSGAEIVAVTDV 36
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 29.1 bits (66), Expect = 2.5
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 5 IGINGFGRIGRLVLREALHRNTPVVGINDPHLS 37
IGI GFGRIG V A V+ D
Sbjct: 145 IGIVGFGRIGTKVGIIANAMGMKVLA-YDILDI 176
>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase;
oxidoreductase, structural genomics, NPPSFA; 2.40A
{Sulfolobus tokodaii}
Length = 350
Score = 28.7 bits (65), Expect = 2.8
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 124 KDAPMFVCGVNLD----------KYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLM 173
D P+ +N + + +V N +CT ++ K + + + ++
Sbjct: 115 PDVPLINPEINWEHLELLKFQKERKGWKGILVKNPNCTAAIMSMPIKPLIEIATKSKIII 174
Query: 174 TTVHAVT 180
TT+ AV+
Sbjct: 175 TTLQAVS 181
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 28.8 bits (65), Expect = 2.9
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 5 IGINGFGRIGRLVLREALH 23
+G G G I + + R+A+H
Sbjct: 166 LGAVGLGAIQKEIARKAVH 184
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.14A {Thermotoga maritima}
Length = 337
Score = 28.4 bits (64), Expect = 3.9
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 1 MAYKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVD 39
M+ KI + G R L E L + GI D
Sbjct: 1 MSLKICVIGSSGHFRYAL-EGLDEECSITGIAPGVPEED 38
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM
binding rossmann fold, structural genomics; HET: MSE
PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Length = 315
Score = 28.1 bits (63), Expect = 4.4
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 4 KIGINGFGRIGRLVLRE-ALHRNTPVVGINDPH 35
++ + G GR G+ +R A +V + +
Sbjct: 12 RLALIGAGRWGKNYIRTIAGLPGAALVRLASSN 44
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 28.3 bits (64), Expect = 4.4
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 5 IGINGFGRIGRLVLREA 21
+G G G IG +
Sbjct: 148 VGFLGMGAIGLAMADRL 164
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 28.0 bits (62), Expect = 4.6
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 11 GRIGRLVLREALHRNTPVVGI 31
GR G +L EA +R V I
Sbjct: 10 GRAGSRILEEAKNRGHEVTAI 30
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2,
protein structure in midwest center for structural
genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella
typhimurium}
Length = 357
Score = 28.1 bits (63), Expect = 4.7
Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 1 MAYKIGINGFGRIGRLVLREALHRNTP---VVGINDP 34
M K GI G G IG LR L VV + D
Sbjct: 22 MTLKAGIVGIGMIGSDHLR-RLANTVSGVEVVAVCDI 57
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 27.9 bits (63), Expect = 4.7
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 5 IGINGFGRIGRLVLREALHRNTPVVGINDPHLS 37
+GI G+G IGR V A V+
Sbjct: 125 LGILGYGGIGRRVAHLAKAFGMRVIA-YTRSSV 156
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 27.9 bits (63), Expect = 5.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 5 IGINGFGRIGRLVLREA 21
+GI G GRIG+ + R
Sbjct: 158 VGIIGLGRIGQAIARRL 174
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI
II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase,
tetramer; 2.30A {Corynebacterium glutamicum}
Length = 344
Score = 28.0 bits (63), Expect = 5.0
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 1 MAYKIGINGFGRIGRL-VLREALHRNTPVVGINDP 34
+ +I + G GRIG + A + + +V I DP
Sbjct: 3 LTLRIALFGAGRIGHVHAANIAANPDLELVVIADP 37
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase,
rossmann-fold, sugar metabolism,
1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A
{Ensifer adhaerens}
Length = 332
Score = 28.0 bits (63), Expect = 5.1
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 3 YKIGINGFGRIGRLVLREAL-HRNTPVVGINDPHL 36
+ G+ G I R + A+ VV +
Sbjct: 1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSA 35
>3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif,
tetramerisat (alpha,beta,BETA,alpha), endoprotease,
hydrolase; 2.70A {Staphylococcus aureus}
Length = 394
Score = 28.0 bits (63), Expect = 5.5
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 204 IIPASTGAAKAVAKVIPDLEGKLT 227
I AS A + +VI + GK+
Sbjct: 98 IGTASVLGAIGLKQVIDQIGGKVV 121
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 28.0 bits (63), Expect = 5.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 4 KIGINGFGRIGRLVLREA 21
++GI G GRIG V A
Sbjct: 166 RVGIIGLGRIGLAVAERA 183
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 28.0 bits (63), Expect = 5.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 4 KIGINGFGRIGRLVLREA 21
+IG+ G G+IGR + A
Sbjct: 173 RIGVLGLGQIGRALASRA 190
>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET:
NAP; 2.29A {Methanocaldococcus jannaschii}
Length = 354
Score = 27.9 bits (63), Expect = 5.8
Identities = 30/175 (17%), Positives = 54/175 (30%), Gaps = 54/175 (30%)
Query: 124 KDAPMFVCGVNLD----------KYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLM 173
+D P+ + VN D K ++++N +C+T C K I D F + +
Sbjct: 121 EDVPLVIPEVNADHLELIEIQREKRGWDGAIITNPNCSTICAVITLKPIMDKFGLEAVFI 180
Query: 174 TTVHAVT-ATQKTVDAP--------------------SKKMWRDGRGANQNIIPASTGAA 212
T+ AV+ A V + S K+ +
Sbjct: 181 ATMQAVSGAGYNGVPSMAILDNLIPFIKNEEEKMQTESLKLLGTLKD------------- 227
Query: 213 KAVAKVIPDLEGKLTGMAFRVPVPN---VSVVDLTVRLCCDVTYDEIKAKVKAAS 264
+ K++ RV V + S+ V+ +EIK +
Sbjct: 228 ----GKVELANFKISASCNRVAVIDGHTESI---FVKTKEGAEPEEIKEVMDKFD 275
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 27.9 bits (63), Expect = 6.2
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 89 GAEYIVESTGVFKTKDTASAHLK---GGAKKVIITAPSKDA 126
G E ++ T K KD A LK GGA VI + S+ A
Sbjct: 214 GGEVFIDFT---KEKDIVGAVLKATDGGAHGVINVSVSEAA 251
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker,
ancillary protein KEFF; potassium channel regulation,
domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia
coli} PDB: 3eyw_A* 3l9x_A*
Length = 413
Score = 27.8 bits (62), Expect = 6.2
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 7 INGFGRIGRLVLREALHRNTPVVGI-NDP 34
I GFGR G++ R L +V + +DP
Sbjct: 9 IAGFGRFGQITGRLLLSSGVKMVVLDHDP 37
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 27.5 bits (62), Expect = 6.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 5 IGINGFGRIGRLVLREA 21
+G+ G GRIG+ V + A
Sbjct: 147 LGLVGMGRIGQAVAKRA 163
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 27.3 bits (60), Expect = 6.7
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 11 GRIGRLVLREALHRNTPVVGI 31
GR G ++ EA R V+ +
Sbjct: 10 GRAGSAIVAEARRRGHEVLAV 30
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 27.8 bits (63), Expect = 6.7
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 66 VVNGKKIAVFQKMKP-EEIPWSQTGAEYIVESTGVFKTKDTASAHLKGG 113
+ +G+ +KP ++I TG EY V G K T L G
Sbjct: 214 IFDGE-------VKPGDKIMLMSTGKEYEVTEVGAQTPKMTKFDKLSAG 255
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 27.5 bits (62), Expect = 6.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 4 KIGINGFGRIGRLVLREA 21
IGI G GRIG+ + + A
Sbjct: 152 TIGIIGLGRIGQAIAKRA 169
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 27.8 bits (63), Expect = 7.1
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 66 VVNGKKIAVFQKMKP-EEIPWSQTGAEYIVESTGVFKTKDTASAHLKGG 113
+ NG ++ +++ TG Y + G+F K LK G
Sbjct: 212 IKNGT-------LRKGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCG 253
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 27.6 bits (62), Expect = 7.2
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 4 KIGINGFGRIGRLVLREA 21
K+ + G G IG V +
Sbjct: 126 KVAVLGLGEIGTRVGKIL 143
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 27.6 bits (62), Expect = 7.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 4 KIGINGFGRIGRLVLREA 21
++GI G GRIGR + A
Sbjct: 175 RLGIFGMGRIGRAIATRA 192
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 27.3 bits (61), Expect = 7.6
Identities = 4/21 (19%), Positives = 10/21 (47%)
Query: 11 GRIGRLVLREALHRNTPVVGI 31
GR+G+ +L+ + +
Sbjct: 10 GRVGKSLLKSLSTTDYQIYAG 30
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics,
structural genomics center for infectious disease,
ssgcid; 1.70A {Entamoeba histolytica}
Length = 239
Score = 27.2 bits (61), Expect = 7.6
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 15/61 (24%)
Query: 250 DVTYDEIKAKVKAASQGPMKGIL--GY-TEDEVVSSDFNGEVCSSVFDAKAGIALNKNFV 306
D ++KA V A+ + K I+ Y T +E V EVC A A +V
Sbjct: 127 DDVEKDVKAVVDASGKALTKVIIECCYLTNEEKV------EVCKRCVAAGA------EYV 174
Query: 307 K 307
K
Sbjct: 175 K 175
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural
genomics, PSI, protein structure initiative; 2.00A
{Aquifex aeolicus} SCOP: c.1.10.1
Length = 225
Score = 27.2 bits (61), Expect = 8.6
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 15/61 (24%)
Query: 250 DVTYDEIKAKVKAASQGPMKGIL--GY-TEDEVVSSDFNGEVCSSVFDAKAGIALNKNFV 306
D +E+K + K I+ Y E+E+ + +A A +F+
Sbjct: 102 DFVVEELKEIFRETPSAVHKVIVETPYLNEEEIK------KAVEICIEAGA------DFI 149
Query: 307 K 307
K
Sbjct: 150 K 150
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.391
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,602,722
Number of extensions: 342132
Number of successful extensions: 954
Number of sequences better than 10.0: 1
Number of HSP's gapped: 847
Number of HSP's successfully gapped: 100
Length of query: 364
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 269
Effective length of database: 4,049,298
Effective search space: 1089261162
Effective search space used: 1089261162
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.0 bits)