RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8544
(364 letters)
>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 164
Score = 256 bits (656), Expect = 2e-86
Identities = 128/164 (78%), Positives = 140/164 (85%)
Query: 150 CTTNCLAPLAKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPAST 209
CTTNCLAPLAKVIHDNF I+EGLMTTVHA+TATQKTVD PS K+WRDGRGA QNIIPAST
Sbjct: 1 CTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPAST 60
Query: 210 GAAKAVAKVIPDLEGKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMK 269
GAAKAV KVIP+L GKLTGMAFRVP NVSVVDLT RL YD+IK VK AS+GP+K
Sbjct: 61 GAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLK 120
Query: 270 GILGYTEDEVVSSDFNGEVCSSVFDAKAGIALNKNFVKLVTWYD 313
GILGYTE +VVSSDFN + SS FDA AGIALN +FVKL++WYD
Sbjct: 121 GILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYD 164
>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 163
Score = 250 bits (640), Expect = 4e-84
Identities = 89/164 (54%), Positives = 120/164 (73%), Gaps = 1/164 (0%)
Query: 150 CTTNCLAPLAKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPAST 209
CTTNCLAP AKV+H+ F I+ G+MTTVH+ T Q+ +D P K + R R A ++IIP +T
Sbjct: 1 CTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRA-RAAAESIIPTTT 59
Query: 210 GAAKAVAKVIPDLEGKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMK 269
GAAKAVA V+P+L+GKL GMA RVP PNVSVVDL L +VT +E+ A +KAA++G +K
Sbjct: 60 GAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELK 119
Query: 270 GILGYTEDEVVSSDFNGEVCSSVFDAKAGIALNKNFVKLVTWYD 313
GIL Y+E+ +VS D+NG SS DA + + ++ VK+V+WYD
Sbjct: 120 GILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYD 163
>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 163
Score = 246 bits (630), Expect = 1e-82
Identities = 74/164 (45%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Query: 150 CTTNCLAPLAKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPAST 209
CTTNCLAP KV+ F I++G MTT H+ T Q+ +DA + R R A NI+P ST
Sbjct: 1 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRD-LRRARAACLNIVPTST 59
Query: 210 GAAKAVAKVIPDLEGKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMK 269
GAAKAVA V+P+L+GKL G+A RVP PNVSVVDL V++ +E+ A + ++ +K
Sbjct: 60 GAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELK 119
Query: 270 GILGYTEDEVVSSDFNGEVCSSVFDAKAGIALNKNFVKLVTWYD 313
GIL ++ +VS DF SS D+ + + + VK++ WYD
Sbjct: 120 GILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYD 163
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {South China Sea lobster
(Palinurus versicolor) [TaxId: 150436]}
Length = 169
Score = 228 bits (582), Expect = 2e-75
Identities = 104/165 (63%), Positives = 122/165 (73%)
Query: 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGN 63
KIGINGFGRIGRLVLR AL VV +NDP ++++Y+ YM KYDSTHG FKG+VK E
Sbjct: 2 KIGINGFGRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDG 61
Query: 64 NIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPS 123
+VV+GKKI VF +MKPE IPWS+ GAEYIVESTGVF T + ASAH KGGAKKVII+APS
Sbjct: 62 ALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPS 121
Query: 124 KDAPMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEI 168
DAPMFVCGVNL+KY VVSNAS + +I ++
Sbjct: 122 ADAPMFVCGVNLEKYSKDMKVVSNASNEFGYSQRVIDLIKHMQKV 166
>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 162
Score = 227 bits (580), Expect = 4e-75
Identities = 75/164 (45%), Positives = 102/164 (62%), Gaps = 2/164 (1%)
Query: 149 SCTTNCLAPLAKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPAS 208
SCTTNCLAPL K ++D + +GLMTTVHA T Q D + + R R A ++IP
Sbjct: 1 SCTTNCLAPLVKPLNDKLGLQDGLMTTVHAYTNNQVLTDVYHEDLRR-ARSATMSMIPTK 59
Query: 209 TGAAKAVAKVIPDLEGKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAASQGPM 268
TGAA AV V+P+L+GKL G A RVP NVS+VDL+ + T +E+ +KAAS+G +
Sbjct: 60 TGAAAAVGDVLPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGEL 119
Query: 269 KGILGYTEDEVVSSDFNGEVCSSVFDAKAGIALNKNFVKLVTWY 312
KGIL Y + +VS D+N + SS DA ++ VK+ +WY
Sbjct: 120 KGILDYNTEPLVSVDYNHDPASSTVDASL-TKVSGRLVKVSSWY 162
>d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 162
Score = 217 bits (553), Expect = 5e-71
Identities = 82/164 (50%), Positives = 108/164 (65%), Gaps = 2/164 (1%)
Query: 150 CTTNCLAPLAKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPAST 209
CTTN LAP+ KV+ + F + + LMTTVH+ T Q+ +D P K + R R A NIIP +T
Sbjct: 1 CTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRA-RAAAINIIPTTT 59
Query: 210 GAAKAVAKVIPDLEGKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMK 269
GAAKA A V+P L+G+ GMA RVP S+ D+T L +VT +E+ A +KAA++GP+K
Sbjct: 60 GAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLK 119
Query: 270 GILGYTEDEVVSSDFNGEVCSSVFDAKAGIALNKNFVKLVTWYD 313
GIL YTEDE+V D + SS+ DAK AL N VK+ WYD
Sbjct: 120 GILAYTEDEIVLQDIVMDPHSSIVDAKLTKALG-NMVKVFAWYD 162
>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 169
Score = 215 bits (548), Expect = 4e-70
Identities = 85/160 (53%), Positives = 111/160 (69%), Gaps = 1/160 (0%)
Query: 4 KIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEG 62
K+G+NGFGRIGRLV R A + +V INDP + ++Y+ YM +YDSTHG+F G VK E
Sbjct: 3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAEN 62
Query: 63 NNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAP 122
+V+NG I +FQ+ P +I W GAEY+VESTGVF T + A AHL+GGAK+VII+AP
Sbjct: 63 GKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAP 122
Query: 123 SKDAPMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVI 162
S DAPMFV GVN +KYD S ++SNAS + ++
Sbjct: 123 SADAPMFVMGVNHEKYDNSLKIISNASNEFGYSNRVVDLM 162
Score = 26.8 bits (59), Expect = 2.7
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 303 KNFVKLVTWYDNEYGYSCRVLDLIQYMKSK 332
N +K+++ NE+GYS RV+DL+ +M SK
Sbjct: 139 DNSLKIISNASNEFGYSNRVVDLMAHMASK 168
>d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 169
Score = 214 bits (545), Expect = 1e-69
Identities = 95/169 (56%), Positives = 121/169 (71%), Gaps = 5/169 (2%)
Query: 149 SCTTNCLAPLAKV-IHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPA 207
SCTTNCLAP+ V + + F + GLMTT+H+ TATQKTVD S K WR GR A NIIP+
Sbjct: 1 SCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPS 60
Query: 208 STGAAKAVAKVIPDLEGKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAASQGP 267
+TGAAKAV VIP +GKLTGM+FRVP P+VSVVDLT D + EI A +K AS+
Sbjct: 61 TTGAAKAVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTY 120
Query: 268 MKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIALN----KNFVKLVTWY 312
MKGILGYT++E+VS+DF + SS++D+KA + N + F K+V+WY
Sbjct: 121 MKGILGYTDEELVSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSWY 169
>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermotoga maritima [TaxId:
2336]}
Length = 169
Score = 203 bits (518), Expect = 1e-65
Identities = 70/169 (41%), Positives = 102/169 (60%), Gaps = 5/169 (2%)
Query: 4 KIGINGFGRIGRLVLREALHRNTP---VVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKT 60
++ INGFGRIGRLV R R P VV IND LA++LKYDS H +F G V+
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLT-DTKTLAHLLKYDSVHKKFPGKVEY 60
Query: 61 EGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIIT 120
N+++V+GK+I VF + P ++PW G ++++ESTGVF+ ++ A HL+ GAKKVIIT
Sbjct: 61 TENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIIT 120
Query: 121 APSKDAPMFVC-GVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEI 168
AP+K + V G N D+ P H+++S AS + + ++
Sbjct: 121 APAKGEDITVVIGCNEDQLKPEHTIISCASNEYGYSNRVVDTLELLLKM 169
>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 172
Score = 200 bits (511), Expect = 1e-64
Identities = 72/172 (41%), Positives = 99/172 (57%), Gaps = 9/172 (5%)
Query: 4 KIGINGFGRIGRLVLREALHRNTP---VVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKT 60
K+ INGFGRIGR LR R VV IND V +++LKYDS G F DVKT
Sbjct: 2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDT-GGVKQASHLLKYDSILGTFDADVKT 60
Query: 61 EGNNI-VVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119
G++ V+GK I V P +PW G + ++E TGVF +D A HL+ GAKKV+I
Sbjct: 61 AGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLI 120
Query: 120 TAPSK-DAPMFVCGVNLDKYDPSHSVVSNASCT---TNCLAPLAKVIHDNFE 167
TAP K D P +V GVN + Y + +++SNAS + + LA ++ + ++
Sbjct: 121 TAPGKGDIPTYVVGVNEEGYTHADTIISNASNEWGYSQRVVDLADIVANKWQ 172
>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}
Length = 166
Score = 198 bits (504), Expect = 1e-63
Identities = 80/162 (49%), Positives = 104/162 (64%), Gaps = 4/162 (2%)
Query: 4 KIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEG 62
K+GINGFGRIGR+V R A R + +V IND DY+AYMLKYDSTHGRF G V+ +
Sbjct: 3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDLL-DADYMAYMLKYDSTHGRFDGTVEVKD 61
Query: 63 NNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAP 122
+++VNGKKI V + P + W + G + + E+TG+F T +TA H+ GAKKV++T P
Sbjct: 62 GHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGP 121
Query: 123 SKD-APMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIH 163
SKD PMFV G N DKY +VSNAS T + +I
Sbjct: 122 SKDNTPMFVKGANFDKYAG-QDIVSNASNETGYSNKVLDLIA 162
>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 190
Score = 184 bits (468), Expect = 5e-58
Identities = 68/184 (36%), Positives = 100/184 (54%), Gaps = 16/184 (8%)
Query: 1 MAYKIGINGFGRIGRLVLREALHRNTP-----VVGINDPHLSVDYLAYMLKYDSTHGRFK 55
M K+GINGFGRIGR+V + VV + D + +Y AY ++YD+ HG+FK
Sbjct: 1 MPIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFK 60
Query: 56 GDVKTEGNNIV--------VNGKKIAVFQKMK-PEEIPWSQTGAEYIVESTGVFKTKDTA 106
+V T ++ VNG +I + + P ++PW + G EY++ESTG+F K A
Sbjct: 61 YEVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAA 120
Query: 107 SAHLKGGAKKVIITAPSK-DAPMFVCGVNLDKYDPS-HSVVSNASCTTNCLAPLAKVIHD 164
HL+GGA+KV+I+AP+ A V GVN +Y+PS H VVSNA + ++
Sbjct: 121 EGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNADNEWGYSHRVVDLVRH 180
Query: 165 NFEI 168
Sbjct: 181 MASK 184
>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 166
Score = 180 bits (457), Expect = 1e-56
Identities = 78/167 (46%), Positives = 108/167 (64%), Gaps = 5/167 (2%)
Query: 4 KIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEG 62
K+GINGFGRIGRLV R A R + VV INDP + +++L Y+LKYDS HG+F +V
Sbjct: 2 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHAD 61
Query: 63 NNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAP 122
+++ KK++VF + P +IPW + + + ESTGVF TK+ AS+HLKGGAKKVI++AP
Sbjct: 62 GFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAP 121
Query: 123 SKD-APMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEI 168
KD P++V G+N +YD +VSNAS +V+ I
Sbjct: 122 PKDDTPIYVMGINHHQYDTKQLIVSNASN---EWGYSNRVLDLAVHI 165
>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 171
Score = 177 bits (449), Expect = 2e-55
Identities = 81/174 (46%), Positives = 108/174 (62%), Gaps = 6/174 (3%)
Query: 2 AYKIGINGFGRIGRLVLREALHR-NTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKT 60
A K+GINGFGRIGR V R AL + VV +ND + LA++LKYDS HGR +V
Sbjct: 1 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLT-DANTLAHLLKYDSVHGRLDAEVSV 59
Query: 61 EGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIIT 120
GNN+VVNGK+I V + PE + W + G + +VESTG F ++ A+ HL+ GAKKVII+
Sbjct: 60 NGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIIS 119
Query: 121 APS-KDAPMFVCGVNLDKYDP-SHSVVSNASCTTNCLAPLAKVIHDNFEILEGL 172
AP+ + V GVN DKYDP +H V+SNAS T + + + +GL
Sbjct: 120 APAKNEDITIVMGVNQDKYDPKAHHVISNASNETGYSHRVVDLAA--YIASKGL 171
>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 173
Score = 165 bits (418), Expect = 9e-51
Identities = 63/184 (34%), Positives = 92/184 (50%), Gaps = 21/184 (11%)
Query: 4 KIGINGFGRIGRLVLREALHRNTP----VVGINDPHLSVDYLAYMLKYDSTHGRFKGDVK 59
++ ING+GRIGR +LR +V IND A++ +YD+ HG+F G V
Sbjct: 3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLG-DPKTNAHLTRYDTAHGKFPGTVS 61
Query: 60 TEGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVII 119
G+ +VVNG KI V P ++PW + ++E TG F TK+ A AH+KGGAKKVII
Sbjct: 62 VNGSYMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVII 121
Query: 120 TAPSKD--APMFVCGVNLDKYDPSHSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTTVH 177
+AP V GVN + +V+SNA + + ++ T
Sbjct: 122 SAPGGADVDATVVYGVNHGTLKSTDTVISNAD--------------NEWGFSNRMLDTTV 167
Query: 178 AVTA 181
A+ +
Sbjct: 168 ALMS 171
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 168
Score = 165 bits (418), Expect = 1e-50
Identities = 78/166 (46%), Positives = 101/166 (60%), Gaps = 6/166 (3%)
Query: 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGN 63
K+GINGFGRIGR V R R V IND LA++LKYDS + RF G+V +
Sbjct: 2 KVGINGFGRIGRQVFRILHSRGVEVALINDLT-DNKTLAHLLKYDSIYHRFPGEVAYDDQ 60
Query: 64 NIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAPS 123
+ V+GK I P+EIPW++ G ++ESTGVF D A AHL+GGAKKVIITAP+
Sbjct: 61 YLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPA 120
Query: 124 KDAPM-FVCGVNLDKYDPS-HSVVSNASCT---TNCLAPLAKVIHD 164
K + V GVN + YDPS H ++SNAS N +A L +++
Sbjct: 121 KGEDITIVMGVNHEAYDPSRHHIISNASNEWGYANRVADLVELVLR 166
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 171
Score = 156 bits (395), Expect = 3e-47
Identities = 23/177 (12%), Positives = 54/177 (30%), Gaps = 17/177 (9%)
Query: 4 KIGINGFGRIGRLVLREAL-HRNTPVVGINDP-HLSVDYLAYMLKYDSTHGRFKGDVKTE 61
+ ING+G +G+ V + V+G++ +A YD + E
Sbjct: 3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFE 62
Query: 62 GNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITA 121
I V G + A+ +++ T + + G K +
Sbjct: 63 KAGIEVAGT------------VDDMLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGG 110
Query: 122 PSKDAP--MFVCGVNLDKYDPS-HSVVSNASCTTNCLAPLAKVIHDNFEILEGLMTT 175
+ F N ++ ++ V + + + ++ D ++ +
Sbjct: 111 EKHEDIGLSFNSLSNYEESYGKDYTRVVIVPENVDAVRAILEMEEDKYKSINKTNKA 167
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 172
Score = 143 bits (363), Expect = 2e-42
Identities = 28/179 (15%), Positives = 52/179 (29%), Gaps = 17/179 (9%)
Query: 1 MAYKIGINGFGRIGRLVLREAL-HRNTPVVGINDPH-LSVDYLAYMLKYDSTHGRFKGDV 58
M K+G+NG+G IG+ V + ++GI Y A L +
Sbjct: 1 MKVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIP 60
Query: 59 KTEGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVI 118
+ E V + + IV++T + K G K +
Sbjct: 61 RFEKEGFEVA------------GTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIF 108
Query: 119 ITAPSKDA--PMFVCGVNLDKYDPS-HSVVSNASCTTNCLAPLAKVIHDNFEILEGLMT 174
D FV N + + V + + + ++ I + +
Sbjct: 109 QGGEKADVAEVSFVAQANYEAALGKNYVRVVVIPENIDAIRAMFELADKWDSIKKTNKS 167
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 178
Score = 137 bits (346), Expect = 6e-40
Identities = 26/188 (13%), Positives = 61/188 (32%), Gaps = 31/188 (16%)
Query: 4 KIGINGFGRIGRLVLREAL-HRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEG 62
+ +NG+G IG+ V + + +VG+ + + + + + K E
Sbjct: 3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEE 62
Query: 63 NNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAP 122
+ I V G + ++ +V++T +L+ + I
Sbjct: 63 SGIPVAGT------------VEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQ-RNAIFQGG 109
Query: 123 SKDA---PMFVCGVNLDKYDP--SHSVVSNASCTTNCLAPL------------AKVIHDN 165
K F N ++ VVS + + + ++ +++
Sbjct: 110 EKAEVADISFSALCNYNEALGKKYIRVVSESIVVPENIDAIRASMKLMSAEDSMRITNES 169
Query: 166 FEILEGLM 173
IL+G +
Sbjct: 170 LGILKGYL 177
>d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 162
Score = 124 bits (313), Expect = 3e-35
Identities = 22/181 (12%), Positives = 52/181 (28%), Gaps = 25/181 (13%)
Query: 150 CTTNCLAPLAKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPAST 209
C T L ++ ++ + T V ++ + G + PA+
Sbjct: 1 CNTTALLRTICTVNKVSKVEKVRATIVRRAADQKE---------VKKGPINSLVPDPATV 51
Query: 210 GAAKAVAKVIPDLEGKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAASQGPMK 269
+ A + MA P + + + + L V +I + ++ + +
Sbjct: 52 PSHHAKDVNSVIRNLDIATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENTPRIVLI 111
Query: 270 GILGYTEDEVVSSDFNGEVCSSVFDAKAGIALNKNFVKLVTWYDNEYGYSCRVLDL-IQY 328
E + ++ D + + + + D S V D +
Sbjct: 112 SSKYDAEATAELVEVARDLKRDRND------IPEVMI----FSD-----SIYVKDDEVML 156
Query: 329 M 329
M
Sbjct: 157 M 157
>d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 165
Score = 121 bits (306), Expect = 3e-34
Identities = 32/186 (17%), Positives = 60/186 (32%), Gaps = 30/186 (16%)
Query: 149 SCTTNCLAPLAKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPAS 208
SC T L K +HD+F I + V + +G IIP
Sbjct: 1 SCNTTGLCRTLKPLHDSFGIKKVRAVIVRRGADPA-----------QVSKGPINAIIPNP 49
Query: 209 TGAAKAVAK-VIPDLEGKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAASQGP 267
V L+ + MA VP + ++ V + T D+I +
Sbjct: 50 PKLPSHHGPDVKTVLDINIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDTP--- 106
Query: 268 MKGILGYTEDEVVSSDFNGEVCSSVFDAKAGIA-LNKNFVKLVTWYDNEYGYSCRVLDL- 325
++S++ + + + + + ++ W + S V+D
Sbjct: 107 --------RVILISAEDGLTSTAEIMEYAKELGRSRNDLFEIPVWRE-----SITVVDNE 153
Query: 326 IQYMKS 331
I YM++
Sbjct: 154 IYYMQA 159
>d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 162
Score = 41.4 bits (97), Expect = 4e-05
Identities = 22/115 (19%), Positives = 35/115 (30%), Gaps = 13/115 (11%)
Query: 149 SCTTNCLAPLAKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPAS 208
SC T L I + + + +M A RG I P
Sbjct: 1 SCNTTGLVRTLSAIREYADYVYAVMIRRAAD-------------PNDTKRGPINAIKPTV 47
Query: 209 TGAAKAVAKVIPDLEGKLTGMAFRVPVPNVSVVDLTVRLCCDVTYDEIKAKVKAA 263
+ V + + MAF VP + V + V L +T D++ +
Sbjct: 48 EVPSHHGPDVQTVIPINIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENT 102
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase
(acylating) {Pseudomonas sp. [TaxId: 306]}
Length = 157
Score = 31.6 bits (71), Expect = 0.069
Identities = 24/165 (14%), Positives = 51/165 (30%), Gaps = 25/165 (15%)
Query: 3 YKIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEG 62
K+ I G G IG ++ + L +L + + G + +
Sbjct: 5 LKVAIIGSGNIGTDLMIKVLRNA--------KYLEMGAMV------GIDAASDGLARAQR 50
Query: 63 NNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHLKGGAKKVIITAP 122
+ + K+ ++ + S + K G ++I P
Sbjct: 51 MGVTTTYAGVEGLIKL----PEFADIDFVFDATSASAHVQNEALLRQAKPG-IRLIDLTP 105
Query: 123 SKDAPMFVCGVNLDK--YDPSHSVVSNASCTT----NCLAPLAKV 161
+ P V VNL++ + ++V+ A LA ++
Sbjct: 106 AAIGPYCVPVVNLEEHLGKLNVNMVTYAGNLDIMTSAALATAERM 150
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId:
1423]}
Length = 134
Score = 29.1 bits (64), Expect = 0.35
Identities = 8/48 (16%), Positives = 18/48 (37%)
Query: 4 KIGINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTH 51
+ + G GR G +++E V+ ++ V+ A +
Sbjct: 2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIA 49
>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase
At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 184
Score = 28.8 bits (63), Expect = 0.85
Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 4 KIGINGFGRIGRLVLRE-ALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGD 57
+IG+ G I R V R L N + G+ L + G
Sbjct: 3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGS 57
>d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde
dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}
Length = 202
Score = 28.2 bits (62), Expect = 1.1
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 150 CTTNCLAPLAKVIHDNFEILEGLMTTVHAVTAT 182
C+T + + + + + +++T AV+
Sbjct: 1 CSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGA 33
>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 129
Score = 27.5 bits (60), Expect = 1.2
Identities = 18/114 (15%), Positives = 31/114 (27%), Gaps = 6/114 (5%)
Query: 7 INGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDVKTEGNNIV 66
I G+ LRE V+ +V + HG V V
Sbjct: 5 ICGWSESTLECLRELRGSEVFVL---AEDENVRKKVLRSGANFVHGDPT-RVSDLEKANV 60
Query: 67 VNGKKIAVFQKMKPEEIPWSQTGAEYIVESTGVFKTKDTASAHL--KGGAKKVI 118
+ + V + E I + + + + + GA +VI
Sbjct: 61 RGARAVIVNLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVI 114
>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 27.6 bits (60), Expect = 1.4
Identities = 8/50 (16%), Positives = 14/50 (28%), Gaps = 2/50 (4%)
Query: 4 KIGINGFGRIGRLVLREAL--HRNTPVVGINDPHLSVDYLAYMLKYDSTH 51
+IG+ G G I + L + + G P +
Sbjct: 3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYA 52
>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312
{Thermotoga maritima [TaxId: 2336]}
Length = 181
Score = 27.6 bits (60), Expect = 1.7
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 4 KIGINGFGRIGRLVLREALHRNTP---VVGINDPH 35
++GI G G R + AL + + +
Sbjct: 5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRT 39
>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel
Kch {Escherichia coli [TaxId: 562]}
Length = 153
Score = 27.5 bits (60), Expect = 1.8
Identities = 5/45 (11%), Positives = 12/45 (26%)
Query: 7 INGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTH 51
+ G + + + R V I++ D+
Sbjct: 8 VCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNAD 52
>d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 221
Score = 27.4 bits (60), Expect = 2.4
Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 7/87 (8%)
Query: 150 CTTNCLAPLAKVIHDNFEILEGLMTTVHAVTATQKTVDAPSKKMWRDGRGANQNIIPAST 209
CT + + + N + + T A + + R+ ++
Sbjct: 2 CTVSLMLMSLGGLFANDLVDWVSVATYQAASGG-------GARHMRELLTQMGHLYGHVA 54
Query: 210 GAAKAVAKVIPDLEGKLTGMAFRVPVP 236
+ I D+E K+T + +P
Sbjct: 55 DELATPSSAILDIERKVTTLTRSGELP 81
>d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde
dehydrogenase {Vibrio cholerae [TaxId: 666]}
Length = 222
Score = 27.0 bits (59), Expect = 3.2
Identities = 4/33 (12%), Positives = 11/33 (33%)
Query: 150 CTTNCLAPLAKVIHDNFEILEGLMTTVHAVTAT 182
CT + + +++ + T A +
Sbjct: 2 CTVSLMLMALGGLYERGLVEWMSAMTYQAASGA 34
>d1egza_ c.1.8.3 (A:) Endoglucanase Cel5a {Erwinia chrysanthemi
[TaxId: 556]}
Length = 291
Score = 26.7 bits (58), Expect = 4.6
Identities = 7/40 (17%), Positives = 10/40 (25%), Gaps = 1/40 (2%)
Query: 58 VKTEGNNIVVNGKKIAVFQKMKPEEIPWSQTGAEYIVEST 97
+ GN I K F G ++ T
Sbjct: 5 LSVNGNKIYAGEKAK-SFAGNSLFWSNNGWGGEKFYTADT 43
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 165
Score = 25.9 bits (55), Expect = 5.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 4 KIGINGFGRIGRLVLREALHRNTPVVGIN 32
KIG+ G G IG + + R ++G++
Sbjct: 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVS 30
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 132
Score = 25.6 bits (55), Expect = 6.0
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 4 KIGINGFGRIGRLVLREALHRNTPV 28
I I G GR+G + + + +
Sbjct: 2 YIIIAGIGRVGYTLAKSLSEKGHDI 26
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 172
Score = 26.0 bits (56), Expect = 6.1
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 3 YKIGINGFGRIGRLVLRE-ALHRNTPVVGINDP 34
+ + + G GR G + LR+ R+ + +
Sbjct: 8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGF 40
>d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon
esculentum) [TaxId: 4081]}
Length = 370
Score = 26.2 bits (56), Expect = 6.6
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 58 VKTEGNNIVVNGKKI 72
V T+G + +NGK +
Sbjct: 4 VYTDGTHFALNGKSL 18
>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643
{Thermotoga maritima [TaxId: 2336]}
Length = 132
Score = 25.4 bits (55), Expect = 7.0
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 4 KIGINGFGRIGRLVLR 19
+ I G G IG+ ++
Sbjct: 4 TVLIIGMGNIGKKLVE 19
>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia
pseudotuberculosis [TaxId: 633]}
Length = 356
Score = 26.0 bits (55), Expect = 7.4
Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 2/53 (3%)
Query: 6 GINGFGRIGRLVLREALHRNTPVVGINDPHLSVDYLAYMLKYDSTHGRFKGDV 58
G GF G + V G + +V L + GD+
Sbjct: 15 GHTGF--KGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDI 65
>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid
dehydrogenase (DAPDH) {Corynebacterium glutamicum
[TaxId: 1718]}
Length = 170
Score = 25.6 bits (55), Expect = 7.4
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 4 KIGINGFGRIGRLVLRE-ALHRNTPVVGINDPHLSVDYLAYMLKYDSTH 51
++ I G+G +GR V + A + +VGI ++D +
Sbjct: 5 RVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVD 53
>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase
VCA1048 {Vibrio cholerae [TaxId: 666]}
Length = 167
Score = 25.2 bits (54), Expect = 9.1
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 4 KIGINGFGRIGRLVLREALHRN 25
KI + G G I + L +
Sbjct: 3 KIAMIGLGDIAQKAYLPVLAQW 24
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.133 0.391
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,351,840
Number of extensions: 62241
Number of successful extensions: 266
Number of sequences better than 10.0: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 46
Length of query: 364
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 278
Effective length of database: 1,226,816
Effective search space: 341054848
Effective search space used: 341054848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)