Query psy8545
Match_columns 547
No_of_seqs 430 out of 2655
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 21:36:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498|consensus 100.0 9.5E-57 2.1E-61 494.7 24.6 322 1-344 216-556 (727)
2 KOG0501|consensus 100.0 4E-53 8.6E-58 439.2 17.7 324 1-344 342-679 (971)
3 PLN03192 Voltage-dependent pot 100.0 6.4E-47 1.4E-51 436.8 30.4 299 9-337 199-502 (823)
4 KOG0500|consensus 100.0 3.7E-46 7.9E-51 384.5 27.2 304 8-331 126-433 (536)
5 KOG0499|consensus 100.0 5.6E-40 1.2E-44 342.7 21.2 297 6-337 357-657 (815)
6 PRK09392 ftrB transcriptional 99.6 5.1E-14 1.1E-18 139.5 14.8 129 195-343 9-141 (236)
7 PRK11753 DNA-binding transcrip 99.5 1.1E-12 2.4E-17 127.4 15.3 121 203-342 7-132 (211)
8 cd00038 CAP_ED effector domain 99.5 6.5E-13 1.4E-17 114.0 12.1 109 200-328 1-114 (115)
9 PRK10402 DNA-binding transcrip 99.4 3.1E-12 6.7E-17 126.2 12.0 110 210-339 25-139 (226)
10 smart00100 cNMP Cyclic nucleot 99.4 7.2E-12 1.6E-16 107.9 12.3 113 200-330 1-118 (120)
11 COG0664 Crp cAMP-binding prote 99.3 1.3E-11 2.8E-16 118.7 14.2 127 198-344 5-136 (214)
12 PF00027 cNMP_binding: Cyclic 99.3 5.6E-12 1.2E-16 104.7 10.1 85 219-323 2-91 (91)
13 PRK11161 fumarate/nitrate redu 99.3 1.5E-11 3.3E-16 121.7 14.6 125 195-340 15-145 (235)
14 COG2905 Predicted signal-trans 99.3 1.3E-11 2.9E-16 131.4 12.4 125 193-337 7-132 (610)
15 KOG1113|consensus 99.2 8.4E-12 1.8E-16 126.2 5.8 118 193-330 122-239 (368)
16 KOG0614|consensus 99.2 1.5E-11 3.3E-16 129.3 5.0 107 195-321 156-262 (732)
17 TIGR03697 NtcA_cyano global ni 99.2 2.6E-10 5.6E-15 109.0 12.4 100 224-341 1-105 (193)
18 PRK09391 fixK transcriptional 99.1 3.7E-10 8E-15 111.8 13.0 107 212-341 34-145 (230)
19 PF07885 Ion_trans_2: Ion chan 99.1 4.7E-10 1E-14 92.3 10.1 54 70-123 25-78 (79)
20 PLN02868 acyl-CoA thioesterase 99.1 2.2E-10 4.7E-15 123.3 10.1 112 195-328 10-125 (413)
21 KOG0614|consensus 99.1 1.1E-10 2.4E-15 123.0 6.3 117 195-331 274-397 (732)
22 PRK13918 CRP/FNR family transc 99.0 2.7E-09 5.8E-14 103.0 12.1 98 216-340 6-110 (202)
23 KOG1113|consensus 98.8 8.4E-09 1.8E-13 104.7 7.3 113 191-324 237-352 (368)
24 KOG3713|consensus 98.8 1E-08 2.3E-13 108.3 7.4 107 6-137 339-445 (477)
25 KOG1419|consensus 98.3 2E-06 4.3E-11 91.8 8.9 92 63-161 263-354 (654)
26 KOG2968|consensus 98.3 1.1E-06 2.3E-11 98.1 6.1 114 208-341 500-618 (1158)
27 PRK10537 voltage-gated potassi 98.2 5.2E-06 1.1E-10 88.5 10.3 52 70-121 169-220 (393)
28 KOG4390|consensus 98.2 5.9E-07 1.3E-11 91.9 1.6 90 11-125 323-412 (632)
29 PF01007 IRK: Inward rectifier 98.1 1.1E-05 2.3E-10 84.2 9.4 103 12-125 38-142 (336)
30 PF04831 Popeye: Popeye protei 98.1 0.00012 2.7E-09 66.7 14.4 128 203-345 14-143 (153)
31 PF00520 Ion_trans: Ion transp 98.0 2.1E-05 4.5E-10 74.3 8.9 100 10-118 95-200 (200)
32 KOG3684|consensus 98.0 3.2E-05 6.8E-10 81.4 9.7 92 66-165 284-375 (489)
33 KOG1545|consensus 97.8 3.4E-07 7.4E-12 92.9 -7.1 57 72-128 396-452 (507)
34 KOG2968|consensus 97.6 0.00019 4.2E-09 80.7 9.6 111 214-337 113-228 (1158)
35 KOG1420|consensus 97.6 2.4E-05 5.2E-10 83.7 1.1 64 65-128 284-347 (1103)
36 KOG1418|consensus 97.5 9.5E-05 2.1E-09 78.8 5.2 57 69-125 115-171 (433)
37 KOG3827|consensus 97.4 0.00026 5.6E-09 73.3 6.3 101 15-126 69-171 (400)
38 KOG4404|consensus 97.3 0.0005 1.1E-08 69.7 7.1 59 70-128 187-253 (350)
39 PRK11832 putative DNA-binding 97.2 0.0068 1.5E-07 58.8 13.6 108 209-337 15-124 (207)
40 KOG3542|consensus 96.2 0.011 2.3E-07 65.1 7.3 108 195-321 283-391 (1283)
41 KOG4404|consensus 95.9 0.0018 3.8E-08 65.8 -0.3 51 69-119 80-130 (350)
42 KOG1418|consensus 94.3 0.0082 1.8E-07 63.9 -1.2 48 68-115 241-296 (433)
43 KOG3542|consensus 91.7 0.28 6E-06 54.4 5.5 92 192-311 36-127 (1283)
44 KOG3676|consensus 82.9 21 0.00046 41.1 13.6 73 82-155 601-680 (782)
45 KOG3193|consensus 81.2 0.58 1.3E-05 50.8 0.6 30 70-99 218-247 (1087)
46 TIGR00934 2a38euk potassium up 78.8 9.6 0.00021 44.2 9.3 94 6-117 444-545 (800)
47 PF04728 LPP: Lipoprotein leuc 78.1 3 6.5E-05 31.9 3.4 31 413-443 3-33 (56)
48 PF07883 Cupin_2: Cupin domain 76.5 3.3 7.2E-05 32.1 3.6 44 220-264 4-48 (71)
49 PF00060 Lig_chan: Ligand-gate 75.8 1.3 2.7E-05 40.0 1.1 75 66-146 41-115 (148)
50 PF05899 Cupin_3: Protein of u 69.6 6.1 0.00013 31.8 3.6 42 221-264 14-55 (74)
51 PRK11530 hypothetical protein; 68.6 5.7 0.00012 37.3 3.5 49 419-469 23-74 (183)
52 PRK00846 hypothetical protein; 66.8 12 0.00027 30.5 4.7 54 410-466 24-77 (77)
53 PRK13290 ectC L-ectoine syntha 64.9 20 0.00043 32.1 6.2 47 218-264 39-86 (125)
54 PRK04406 hypothetical protein; 63.5 15 0.00033 29.8 4.7 40 410-449 22-61 (75)
55 PRK02793 phi X174 lysis protei 59.0 21 0.00046 28.7 4.8 40 410-449 19-58 (72)
56 PLN03223 Polycystin cation cha 59.0 90 0.002 38.6 11.7 28 99-126 1399-1426(1634)
57 PRK02119 hypothetical protein; 57.0 24 0.00052 28.5 4.8 39 411-449 21-59 (73)
58 PRK00295 hypothetical protein; 55.1 29 0.00063 27.6 4.9 37 411-447 17-53 (68)
59 KOG3088|consensus 52.4 1.2E+02 0.0027 31.0 9.9 33 13-51 198-230 (313)
60 PRK15396 murein lipoprotein; P 51.9 18 0.00039 29.7 3.3 33 413-445 25-57 (78)
61 PRK00736 hypothetical protein; 50.9 34 0.00074 27.2 4.7 39 411-449 17-55 (68)
62 PF04102 SlyX: SlyX; InterPro 50.8 13 0.00028 29.6 2.4 38 412-449 17-54 (69)
63 PF07077 DUF1345: Protein of u 50.2 1.5E+02 0.0033 28.2 9.9 48 69-116 132-179 (180)
64 PRK09973 putative outer membra 47.8 23 0.00049 29.5 3.3 32 413-444 24-55 (85)
65 COG4709 Predicted membrane pro 47.3 19 0.00042 34.4 3.2 55 134-190 5-63 (195)
66 KOG4196|consensus 46.5 33 0.00072 30.7 4.3 40 410-449 74-117 (135)
67 COG2900 SlyX Uncharacterized p 44.5 49 0.0011 26.6 4.6 52 411-466 20-72 (72)
68 COG0662 {ManC} Mannose-6-phosp 44.0 46 0.00099 29.6 5.1 48 216-264 38-86 (127)
69 PRK04325 hypothetical protein; 43.6 54 0.0012 26.5 4.9 40 410-449 20-59 (74)
70 PF10011 DUF2254: Predicted me 43.5 3.3E+02 0.0072 28.9 12.4 65 62-126 93-157 (371)
71 COG1917 Uncharacterized conser 43.2 32 0.0007 30.4 4.0 48 217-265 46-94 (131)
72 PF11622 DUF3251: Protein of u 40.9 7.5 0.00016 36.4 -0.5 48 420-469 5-55 (165)
73 KOG4440|consensus 40.2 64 0.0014 36.4 6.2 95 15-122 572-666 (993)
74 COG3450 Predicted enzyme of th 35.6 76 0.0017 28.1 4.9 42 221-264 52-93 (116)
75 TIGR00933 2a38 potassium uptak 34.1 89 0.0019 33.4 6.3 43 68-110 230-274 (390)
76 PF04728 LPP: Lipoprotein leuc 34.0 35 0.00076 26.1 2.2 28 412-439 9-36 (56)
77 PF08006 DUF1700: Protein of u 33.6 45 0.00097 31.5 3.5 55 133-189 4-62 (181)
78 COG3718 IolB Uncharacterized e 31.5 87 0.0019 31.1 5.0 81 216-312 31-111 (270)
79 smart00835 Cupin_1 Cupin. This 29.8 77 0.0017 28.7 4.3 48 217-264 33-86 (146)
80 PF02403 Seryl_tRNA_N: Seryl-t 28.8 66 0.0014 27.5 3.5 35 415-449 69-103 (108)
81 KOG1341|consensus 28.7 2.9E+02 0.0063 31.5 8.9 92 6-115 456-555 (854)
82 PF07697 7TMR-HDED: 7TM-HD ext 27.1 2.1E+02 0.0046 27.3 7.1 34 202-235 172-207 (222)
83 PF11770 GAPT: GRB2-binding ad 26.8 25 0.00054 32.3 0.5 28 8-35 9-36 (158)
84 PHA02909 hypothetical protein; 26.5 1.4E+02 0.0031 22.8 4.3 25 12-36 38-62 (72)
85 PRK10750 potassium transporter 26.0 2.9E+02 0.0062 30.7 8.6 97 65-161 300-402 (483)
86 KOG1054|consensus 25.9 1.1E+02 0.0024 34.4 5.2 53 69-122 595-647 (897)
87 PHA01757 hypothetical protein 25.3 2.1E+02 0.0045 23.6 5.3 47 93-140 4-50 (98)
88 COG4238 Murein lipoprotein [Ce 25.1 87 0.0019 25.4 3.1 32 412-443 24-55 (78)
89 PRK04190 glucose-6-phosphate i 23.3 1.6E+02 0.0035 28.3 5.3 48 217-264 71-131 (191)
90 PLN02678 seryl-tRNA synthetase 23.0 1.4E+02 0.003 32.8 5.4 60 416-492 74-136 (448)
91 PF11278 DUF3079: Protein of u 21.6 51 0.0011 24.4 1.1 28 491-521 12-44 (52)
92 KOG3088|consensus 21.5 9.1E+02 0.02 24.9 10.5 19 16-34 140-158 (313)
93 KOG1053|consensus 21.4 5.5E+02 0.012 30.7 9.6 60 74-140 616-675 (1258)
94 PRK13109 flhB flagellar biosyn 21.4 6.7E+02 0.014 26.7 9.9 24 136-159 226-249 (358)
95 PRK09108 type III secretion sy 21.2 6.8E+02 0.015 26.5 9.9 24 136-159 219-242 (353)
96 PF12041 DELLA: Transcriptiona 21.1 52 0.0011 26.5 1.2 21 433-453 13-33 (73)
97 PRK11171 hypothetical protein; 21.0 1.9E+02 0.0041 29.3 5.6 49 215-264 185-234 (266)
98 PRK13264 3-hydroxyanthranilate 20.9 1.7E+02 0.0036 28.0 4.7 33 232-264 52-87 (177)
99 KOG2199|consensus 20.9 2.7E+02 0.0058 30.0 6.6 40 411-450 329-368 (462)
100 TIGR03037 anthran_nbaC 3-hydro 20.9 1.3E+02 0.0029 28.1 4.0 36 228-264 43-81 (159)
101 PF02037 SAP: SAP domain; Int 20.7 98 0.0021 21.0 2.4 26 135-160 5-35 (35)
102 PF14377 DUF4414: Domain of un 20.1 71 0.0015 27.7 1.9 44 147-190 52-105 (108)
103 COG3837 Uncharacterized conser 20.1 1.6E+02 0.0035 27.5 4.3 37 227-264 57-93 (161)
No 1
>KOG0498|consensus
Probab=100.00 E-value=9.5e-57 Score=494.70 Aligned_cols=322 Identities=32% Similarity=0.616 Sum_probs=292.8
Q ss_pred CcccccchHHHH------H-HHHHHHHHHHHHHHHHHHHHHhccccccCCCCCC-chhhhhHh-----hhhccCCCCchh
Q psy8545 1 MDRYSQYSALIL------T-LLMLSFTLVAHWLACLWFVIADYERNRYRQDWDL-GWIHTLAE-----RLKVNVSEISHR 67 (547)
Q Consensus 1 ~~ry~~y~~l~l------~-kL~~~~ll~~H~~ACiw~~i~~~~~~~~~~~~~~-~Wl~~~~~-----~~~~~~~~~s~~ 67 (547)
++||+++..+.. + ++|+.+++++||+||+||+++...... +|.. +|+..+.. +...++...+++
T Consensus 216 ~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~---~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~ 292 (727)
T KOG0498|consen 216 FARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPAS---CPRKATWLGSLGRLLSCYNLSFTFGIYSLA 292 (727)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---CccccccccccccccccCcccccccchhHH
Confidence 367777776665 4 999999999999999999999877533 3555 89886432 111125567899
Q ss_pred HHHHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccC
Q psy8545 68 ESYITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRRSLYQTKWRDLKEFLTLNQ 147 (547)
Q Consensus 68 ~~Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~~~~~~~~~~k~~~l~~fm~~~~ 147 (547)
.+|++||||+++||||+|||+++|.+..|++|+|++|++|.++||++||||+++++.+.+++.+|+.|+.++++||+.|+
T Consensus 293 ~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~ 372 (727)
T KOG0498|consen 293 LKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQ 372 (727)
T ss_pred HHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHhhhhhhhhhhcccCCcchhhhhccCCcccccccccccccccc-ccchhhhccHHHHHHHHhhccccccCCCcE
Q psy8545 148 IPKELKQRMQDYFQTMWSLSHGIDVHETLKEFPEELRGDVSMHLHREIL-QLPIFEAATQGCLKLLSLHIRNNFCAPGEY 226 (547)
Q Consensus 148 ip~~L~~rv~~Y~~~~~~~~~~~d~~~iL~~Lp~~Lr~~i~~~l~~~ll-~iplF~~ls~~~l~~L~~~l~~~~y~~ge~ 226 (547)
||++||+||++|++|+|..++|+|++++|++||+.||.||.+|++.+++ ++|+|++++++++.+|+.+++...|+|||+
T Consensus 373 LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~ 452 (727)
T KOG0498|consen 373 LPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEY 452 (727)
T ss_pred CCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCe
Confidence 9999999999999999999999999999999999999999999999987 599999999999999999999999999999
Q ss_pred EEccCCCCCcEEEEEceeEEEEEcC----eEEEEcCCCCeechhhhhhhc-cCCCCCCCCCCCCCCCCCccceeEEEEEe
Q psy8545 227 LIHKGDHLSSIYYLCNGSMEVVQNG----MVVAILGKGDLVGCDISMWLS-EKNGGSAVGPGAGTGVDPIVKSSCDVKAL 301 (547)
Q Consensus 227 I~~qGd~~~~lYfI~~G~V~v~~~~----~vl~~l~~Gd~FG~eisl~~~-~p~~~s~~~~~~~~~~~~~~~~~~tv~Al 301 (547)
|++|||+.+.||||++|.+++...+ .++..+++||+||||+..+.. .| +++||+|+
T Consensus 453 iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~~p-------------------~t~TVral 513 (727)
T KOG0498|consen 453 IIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWCLDLP-------------------QTRTVRAL 513 (727)
T ss_pred EEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHHhcCC-------------------CCceeehh
Confidence 9999999999999999999999866 689999999999999999876 44 67899999
Q ss_pred eeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhhhh
Q psy8545 302 TYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIREGY 344 (547)
Q Consensus 302 t~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr~~~ 344 (547)
|+|+++.|++++|..+++.||.++..+.+...+-++.+.|...
T Consensus 514 t~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~a 556 (727)
T KOG0498|consen 514 TYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWA 556 (727)
T ss_pred hhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhh
Confidence 9999999999999999999999999999877777777766554
No 2
>KOG0501|consensus
Probab=100.00 E-value=4e-53 Score=439.23 Aligned_cols=324 Identities=40% Similarity=0.822 Sum_probs=294.7
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--CCCchhhhhHhhhhccCC-----------CCchh
Q psy8545 1 MDRYSQYSALILTLLMLSFTLVAHWLACLWFVIADYERNRYRQD--WDLGWIHTLAERLKVNVS-----------EISHR 67 (547)
Q Consensus 1 ~~ry~~y~~l~l~kL~~~~ll~~H~~ACiw~~i~~~~~~~~~~~--~~~~Wl~~~~~~~~~~~~-----------~~s~~ 67 (547)
||+|..|++.+|+.|+..+.+++||+||+||.++.++.....++ --++|+..++...+.++. +.+..
T Consensus 342 LD~YlEYGAA~LvLLlC~y~lvAHWlACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~~~tpY~~~~s~~~~~~gGPSr~ 421 (971)
T KOG0501|consen 342 LDHYLEYGAAVLVLLLCVYGLVAHWLACIWYSIGDYEVRDEMDNTIQPDSWLWKLANDIGTPYNYNLSNKGTLVGGPSRT 421 (971)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhheeccchheecccccccccchHHHHHHhhcCCCceeccCCCceeecCCccc
Confidence 69999999999999999999999999999999999877543321 123899988877666442 24677
Q ss_pred HHHHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccC
Q psy8545 68 ESYITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRRSLYQTKWRDLKEFLTLNQ 147 (547)
Q Consensus 68 ~~Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~~~~~~~~~~k~~~l~~fm~~~~ 147 (547)
..|+.|+||+++.|||||||++.|.|+.|++|++++|++|+++||-+||+++.||++|.+.+..|++.++.+.+||+-+.
T Consensus 422 S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~e 501 (971)
T KOG0501|consen 422 SAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYE 501 (971)
T ss_pred ceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHhhhhhhhhhhcccCCcchhhhhccCCcccccccccccccccc-ccchhhhccHHHHHHHHhhccccccCCCcE
Q psy8545 148 IPKELKQRMQDYFQTMWSLSHGIDVHETLKEFPEELRGDVSMHLHREIL-QLPIFEAATQGCLKLLSLHIRNNFCAPGEY 226 (547)
Q Consensus 148 ip~~L~~rv~~Y~~~~~~~~~~~d~~~iL~~Lp~~Lr~~i~~~l~~~ll-~iplF~~ls~~~l~~L~~~l~~~~y~~ge~ 226 (547)
+|+.|..||++|..-.|...+|+|.+++|...|++++.||+.|+.+++. ++|.|+-.|++|++.|+..++...++|||.
T Consensus 502 vPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDL 581 (971)
T KOG0501|consen 502 VPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDL 581 (971)
T ss_pred ccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcce
Confidence 9999999999999999999999999999999999999999999999977 599999999999999999999999999999
Q ss_pred EEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeechhhhhhhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEE
Q psy8545 227 LIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDL 306 (547)
Q Consensus 227 I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~l 306 (547)
|++.|+..+.++||++|.+++.++|++++++|+||+||+ . |+.... ...+.++|+|+|+|++
T Consensus 582 lYHtGESvDaLcFvVsGSLEVIQDDEVVAILGKGDVFGD-~-FWK~~t----------------~~qs~ANVRALTYcDL 643 (971)
T KOG0501|consen 582 LYHTGESVDALCFVVSGSLEVIQDDEVVAILGKGDVFGD-E-FWKENT----------------LGQSAANVRALTYCDL 643 (971)
T ss_pred eeecCCccceEEEEEecceEEeecCcEEEEeecCccchh-H-Hhhhhh----------------hhhhhhhhhhhhhhhh
Confidence 999999999999999999999999999999999999994 3 332211 2237789999999999
Q ss_pred EEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhhhh
Q psy8545 307 KSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIREGY 344 (547)
Q Consensus 307 l~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr~~~ 344 (547)
..|.++.+.++++-|..|+..|.+.+ .|+||+|++.
T Consensus 644 H~IKrd~Ll~VLdFYtAFanSFaRNl--~LTyNLr~Ri 679 (971)
T KOG0501|consen 644 HMIKRDKLLKVLDFYTAFANSFARNL--TLTYNLRHRI 679 (971)
T ss_pred hHHhHHHHHHHHHHHHHHHHHhhhce--eeEeecccee
Confidence 99999999999999999999998766 4677777765
No 3
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=6.4e-47 Score=436.80 Aligned_cols=299 Identities=21% Similarity=0.410 Sum_probs=272.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCchhhhhHhhhhccCCCCchhHHHHHHHHHHHHHHhcccCCC
Q psy8545 9 ALILTLLMLSFTLVAHWLACLWFVIADYERNRYRQDWDLGWIHTLAERLKVNVSEISHRESYITALYFTCSSLTSVGFGN 88 (547)
Q Consensus 9 ~l~l~kL~~~~ll~~H~~ACiw~~i~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~s~~~~Yi~SlYwai~TltTVGyGd 88 (547)
.+.++++++.+++++||+||+||+++..... ...+|+.... .++.+.+++.+|++|+||+++|||||||||
T Consensus 199 ~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~-----~~~~Wi~~~~----~~~~~~s~~~~Yi~slYwai~TmtTVGYGD 269 (823)
T PLN03192 199 WIRCARLLSVTLFLVHCAGCLYYLIADRYPH-----QGKTWIGAVI----PNFRETSLWIRYISAIYWSITTMTTVGYGD 269 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCchHHHhh----hccccCcHHHHHHHHHHHHHHHHhhccCCC
Confidence 4568899999999999999999999864321 2347887421 245678999999999999999999999999
Q ss_pred ccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCchHHHHhhhhhhhhhhcccC
Q psy8545 89 VSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRRSLYQTKWRDLKEFLTLNQIPKELKQRMQDYFQTMWSLSH 168 (547)
Q Consensus 89 i~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~~~~~~~~~~k~~~l~~fm~~~~ip~~L~~rv~~Y~~~~~~~~~ 168 (547)
++|.|..|++|++++|++|++++||++|++++++...+.++.+|+++++.+++||+.+++|+.||.||++||++.|+. +
T Consensus 270 i~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~-~ 348 (823)
T PLN03192 270 LHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKA-E 348 (823)
T ss_pred cCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999975 4
Q ss_pred CcchhhhhccCCcccccccccccccccc-ccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEE
Q psy8545 169 GIDVHETLKEFPEELRGDVSMHLHREIL-QLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEV 247 (547)
Q Consensus 169 ~~d~~~iL~~Lp~~Lr~~i~~~l~~~ll-~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v 247 (547)
+.+++++++.||++||.+|..+++..++ ++++|++++++++.+|+..++.+.|+|||.|+.+||.++.+|||++|.|++
T Consensus 349 ~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i 428 (823)
T PLN03192 349 SLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEI 428 (823)
T ss_pred cccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEE
Confidence 5778899999999999999999998865 699999999999999999999999999999999999999999999999999
Q ss_pred EE----cCeEEEEcCCCCeechhhhhhhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHH
Q psy8545 248 VQ----NGMVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPE 323 (547)
Q Consensus 248 ~~----~~~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~ 323 (547)
+. ++.++..+++|++|| |++++.+.| ++++++|.++|+++.|++++|.++++.+|+
T Consensus 429 ~~~~~~~e~~l~~l~~Gd~FG-E~~~l~~~p-------------------~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~ 488 (823)
T PLN03192 429 IDSEGEKERVVGTLGCGDIFG-EVGALCCRP-------------------QSFTFRTKTLSQLLRLKTSTLIEAMQTRQE 488 (823)
T ss_pred EEecCCcceeeEEccCCCEec-chHHhcCCC-------------------CCCeEEEcccEEEEEEEHHHHHHHHHHhhH
Confidence 85 235789999999999 889887665 677999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy8545 324 YQQEFAHDIQHDLT 337 (547)
Q Consensus 324 ~~~~~~~~l~~~L~ 337 (547)
+...+.+.+.+++.
T Consensus 489 d~~~i~~~~l~~~~ 502 (823)
T PLN03192 489 DNVVILKNFLQHHK 502 (823)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999888877654
No 4
>KOG0500|consensus
Probab=100.00 E-value=3.7e-46 Score=384.49 Aligned_cols=304 Identities=26% Similarity=0.510 Sum_probs=267.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCchhhhhHhhhhc-cCCCCchhHHHHHHHHHHHHHHhcccC
Q psy8545 8 SALILTLLMLSFTLVAHWLACLWFVIADYERNRYRQDWDLGWIHTLAERLKV-NVSEISHRESYITALYFTCSSLTSVGF 86 (547)
Q Consensus 8 ~~l~l~kL~~~~ll~~H~~ACiw~~i~~~~~~~~~~~~~~~Wl~~~~~~~~~-~~~~~s~~~~Yi~SlYwai~TltTVGy 86 (547)
.+..+++|+..+++++||.||+||++........+ +|....-..-.. .-.......+|+.|+||+..||||+|-
T Consensus 126 n~fri~~lv~~~~ilfHWNaClYf~iS~~~g~~~d-----~wvY~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiGe 200 (536)
T KOG0500|consen 126 NAFRISKLVHYCLILFHWNACLYFLISKAIGFTTD-----DWVYPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIGE 200 (536)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHhhhHhcCcccc-----ccccCCccCccccccchhHHHHHHHHHHHHHhhhhhhccC
Confidence 45569999999999999999999999987654332 365521000000 111134789999999999999999983
Q ss_pred CCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCchHHHHhhhhhhhhhhcc
Q psy8545 87 GNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRRSLYQTKWRDLKEFLTLNQIPKELKQRMQDYFQTMWSL 166 (547)
Q Consensus 87 Gdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~~~~~~~~~~k~~~l~~fm~~~~ip~~L~~rv~~Y~~~~~~~ 166 (547)
...|.++.|.+|.|+=.++|+++||.++|++++++.++++.+.+|+++|+.+++||+.+++|+.++.||.+||.|.|..
T Consensus 201 -~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~ 279 (536)
T KOG0500|consen 201 -QPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAH 279 (536)
T ss_pred -CCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhhhccCCcccccccccccccc-ccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeE
Q psy8545 167 SHGIDVHETLKEFPEELRGDVSMHLHRE-ILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSM 245 (547)
Q Consensus 167 ~~~~d~~~iL~~Lp~~Lr~~i~~~l~~~-ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V 245 (547)
++..|++++++.||+.|+++|+.+++.+ +.++++|+++.+.++.+|..+++++.|.|||+|+++||.+.+||+|.+|.+
T Consensus 280 ~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L 359 (536)
T KOG0500|consen 280 KKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKL 359 (536)
T ss_pred cccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEE
Confidence 9999999999999999999999999988 557999999999999999999999999999999999999999999999999
Q ss_pred EEEEcC--eEEEEcCCCCeechhhhhhhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHH
Q psy8545 246 EVVQNG--MVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPE 323 (547)
Q Consensus 246 ~v~~~~--~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~ 323 (547)
++..+| .+...+++|++|| |++++.-..+-. .-+|+++|+++.++++++++++|+.++++.||+
T Consensus 360 ~Vv~dDg~t~~~~L~~G~~FG-EisIlni~g~~~-------------gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~ 425 (536)
T KOG0500|consen 360 AVVADDGVTVFVTLKAGSVFG-EISILNIKGNKN-------------GNRRTANVRSVGYSDLFVLSKDDLWEALSEYPD 425 (536)
T ss_pred EEEecCCcEEEEEecCCceee-eeEEEEEcCccc-------------CCcceeeeeeeccceeeEeeHHHHHHHHHhCCH
Confidence 999865 4788999999999 999875432111 236999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy8545 324 YQQEFAHD 331 (547)
Q Consensus 324 ~~~~~~~~ 331 (547)
-+..+...
T Consensus 426 a~~~L~~k 433 (536)
T KOG0500|consen 426 ARKRLEEK 433 (536)
T ss_pred HHHHHHHH
Confidence 98888744
No 5
>KOG0499|consensus
Probab=100.00 E-value=5.6e-40 Score=342.71 Aligned_cols=297 Identities=20% Similarity=0.416 Sum_probs=269.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCchhhhhHhhhhccCCCCchhHHHHHHHHHHHHHHhccc
Q psy8545 6 QYSALILTLLMLSFTLVAHWLACLWFVIADYERNRYRQDWDLGWIHTLAERLKVNVSEISHRESYITALYFTCSSLTSVG 85 (547)
Q Consensus 6 ~y~~l~l~kL~~~~ll~~H~~ACiw~~i~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~s~~~~Yi~SlYwai~TltTVG 85 (547)
+--++.+++-..++++++|+.||+||+...++.... +.|+.+ .....|++|+|||+-|++|+|
T Consensus 357 ~~y~~RV~rT~~YmlyilHinacvYY~~SayqglG~-----~rWVyd------------g~Gn~YiRCyyfa~kt~~tiG 419 (815)
T KOG0499|consen 357 KAYIYRVIRTTGYLLYILHINACVYYWASAYQGLGT-----TRWVYD------------GEGNEYIRCYYFAVKTLITIG 419 (815)
T ss_pred chhhhhhHHHHHHHHHHHhhhHHHHHHHHhhccccc-----ceeEEc------------CCCCceeeehhhHHHHHHHhc
Confidence 444556778888999999999999999999887543 367763 334569999999999999999
Q ss_pred CCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCchHHHHhhhhhhhhhhc
Q psy8545 86 FGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRRSLYQTKWRDLKEFLTLNQIPKELKQRMQDYFQTMWS 165 (547)
Q Consensus 86 yGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~~~~~~~~~~k~~~l~~fm~~~~ip~~L~~rv~~Y~~~~~~ 165 (547)
|...|.|..|++|..+--++|+++|+.+||.|-.+|......+..|+..|+....||+..+||++.+.||+.||+|.|.
T Consensus 420 -~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~ 498 (815)
T KOG0499|consen 420 -GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWD 498 (815)
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcchhhhhccCCcccccccccccccccc-ccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEcee
Q psy8545 166 LSHGIDVHETLKEFPEELRGDVSMHLHREIL-QLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGS 244 (547)
Q Consensus 166 ~~~~~d~~~iL~~Lp~~Lr~~i~~~l~~~ll-~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~ 244 (547)
.++-.|+.++|+.||..|+.|++..++-.++ ++.+|++++...+..+..+++.+.|-|||+|+++||.+.+||+|..|+
T Consensus 499 sQr~LDEs~ll~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~Gq 578 (815)
T KOG0499|consen 499 SQRMLDESDLLKTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQ 578 (815)
T ss_pred hhccccHHHHHHhcchhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecce
Confidence 9999999999999999999999999977655 799999999999999999999999999999999999999999999999
Q ss_pred EEEEE---cCeEEEEcCCCCeechhhhhhhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhC
Q psy8545 245 MEVVQ---NGMVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLY 321 (547)
Q Consensus 245 V~v~~---~~~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~ 321 (547)
|+|.+ .+.++..|++|.+|| |++++.-.. .-+|+++|+|.++|.+++++++++.+++..|
T Consensus 579 vQVlGGp~~~~Vl~tL~~GsVFG-EISLLaigG----------------~nRRTAnV~a~Gf~nLfvL~KkdLneil~~Y 641 (815)
T KOG0499|consen 579 VQVLGGPDGTKVLVTLKAGSVFG-EISLLAIGG----------------GNRRTANVVAHGFANLFVLDKKDLNEILVHY 641 (815)
T ss_pred EEEecCCCCCEEEEEecccceee-eeeeeeecC----------------CCccchhhhhcccceeeEecHhHHHHHHHhC
Confidence 99996 347999999999999 999985432 2359999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8545 322 PEYQQEFAHDIQHDLT 337 (547)
Q Consensus 322 P~~~~~~~~~l~~~L~ 337 (547)
|+-+..+.+.+..-+.
T Consensus 642 P~sq~iLrkkAr~llk 657 (815)
T KOG0499|consen 642 PDSQRILRKKARVLLK 657 (815)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 9998888776654444
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.56 E-value=5.1e-14 Score=139.51 Aligned_cols=129 Identities=15% Similarity=0.173 Sum_probs=114.6
Q ss_pred ccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE----cCeEEEEcCCCCeechhhhhh
Q psy8545 195 ILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ----NGMVVAILGKGDLVGCDISMW 270 (547)
Q Consensus 195 ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~----~~~vl~~l~~Gd~FG~eisl~ 270 (547)
+..+++|..++++++..+....+.+.|++|++|+++|+.++++|+|++|.|+++. .+.++..+++|++|| +.+++
T Consensus 9 l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g-~~~~~ 87 (236)
T PRK09392 9 LRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFI-LAAVV 87 (236)
T ss_pred HhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhh-hHHHh
Confidence 4469999999999999999999999999999999999999999999999999985 235788999999999 77877
Q ss_pred hccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhhh
Q psy8545 271 LSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIREG 343 (547)
Q Consensus 271 ~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr~~ 343 (547)
.+.+ +.++++|+++|+++.|++++|.+++.++|.+...+.+.+.+++.......
T Consensus 88 ~~~~-------------------~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~~~~~~~ 141 (236)
T PRK09392 88 LDAP-------------------YLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYRGLVKSL 141 (236)
T ss_pred CCCC-------------------CceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554 67799999999999999999999999999999999988887766544333
No 7
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.46 E-value=1.1e-12 Score=127.39 Aligned_cols=121 Identities=21% Similarity=0.461 Sum_probs=105.0
Q ss_pred hccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE---cC--eEEEEcCCCCeechhhhhhhccCCCC
Q psy8545 203 AATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---NG--MVVAILGKGDLVGCDISMWLSEKNGG 277 (547)
Q Consensus 203 ~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~~--~vl~~l~~Gd~FG~eisl~~~~p~~~ 277 (547)
.++++.+..++..++.+.|++|++|+.+|++++++|||++|.|+++. ++ ..+..+++|++|| +..++.+.+
T Consensus 7 ~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g-~~~~~~~~~--- 82 (211)
T PRK11753 7 PQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIG-ELGLFEEGQ--- 82 (211)
T ss_pred CCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEe-ehhhccCCC---
Confidence 47899999999999999999999999999999999999999999984 22 4788999999999 776664321
Q ss_pred CCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhh
Q psy8545 278 SAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIRE 342 (547)
Q Consensus 278 s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr~ 342 (547)
.+.++++|.++|+++.|++++|.++++.+|++...+.+.+.+++....+.
T Consensus 83 ---------------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~ 132 (211)
T PRK11753 83 ---------------ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARRLQNTSRK 132 (211)
T ss_pred ---------------CceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 26678999999999999999999999999999999988888887644333
No 8
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.46 E-value=6.5e-13 Score=114.01 Aligned_cols=109 Identities=28% Similarity=0.468 Sum_probs=97.0
Q ss_pred hhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEcC-----eEEEEcCCCCeechhhhhhhccC
Q psy8545 200 IFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNG-----MVVAILGKGDLVGCDISMWLSEK 274 (547)
Q Consensus 200 lF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~-----~vl~~l~~Gd~FG~eisl~~~~p 274 (547)
+|..++++.+..+..+++...+++|++|+.+|+..+++|+|.+|.++++..+ ..+..+.+|++|| +..++...+
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g-~~~~~~~~~ 79 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFG-ELALLGNGP 79 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcC-hHHHhcCCC
Confidence 4788999999999999999999999999999999999999999999998632 5788899999999 666653332
Q ss_pred CCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHH
Q psy8545 275 NGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEF 328 (547)
Q Consensus 275 ~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~ 328 (547)
+..+++|.++|+++.|++++|.++++++|++...+
T Consensus 80 -------------------~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 114 (115)
T cd00038 80 -------------------RSATVRALTDSELLVLPRSDFRRLLQEYPELARRL 114 (115)
T ss_pred -------------------CCceEEEcCceEEEEEeHHHHHHHHHHCcHhHHhc
Confidence 66799999999999999999999999999988765
No 9
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.38 E-value=3.1e-12 Score=126.22 Aligned_cols=110 Identities=16% Similarity=0.257 Sum_probs=95.9
Q ss_pred HHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE---cC--eEEEEcCCCCeechhhhhhhccCCCCCCCCCCC
Q psy8545 210 KLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---NG--MVVAILGKGDLVGCDISMWLSEKNGGSAVGPGA 284 (547)
Q Consensus 210 ~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~~--~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~ 284 (547)
.++....+.+.|++|++|+.+||+.+++|||++|.|+++. +| .++..+.+|++|| +.+++.+.+
T Consensus 25 ~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G-~~~~~~~~~---------- 93 (226)
T PRK10402 25 FDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIG-EIELIDKDH---------- 93 (226)
T ss_pred HHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEE-eehhhcCCC----------
Confidence 3466678889999999999999999999999999999985 23 4788999999999 777765544
Q ss_pred CCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q psy8545 285 GTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYN 339 (547)
Q Consensus 285 ~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~ 339 (547)
+.++++|+++|+++.|++++|.+++..+|.+...+.+.+.+++...
T Consensus 94 ---------~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~~~~~~ 139 (226)
T PRK10402 94 ---------ETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFLSHKNYRN 139 (226)
T ss_pred ---------CCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 6679999999999999999999999999999999999888876543
No 10
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.36 E-value=7.2e-12 Score=107.93 Aligned_cols=113 Identities=22% Similarity=0.387 Sum_probs=97.5
Q ss_pred hhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEc-----CeEEEEcCCCCeechhhhhhhccC
Q psy8545 200 IFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQN-----GMVVAILGKGDLVGCDISMWLSEK 274 (547)
Q Consensus 200 lF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~-----~~vl~~l~~Gd~FG~eisl~~~~p 274 (547)
+|.+++++.+..++..++.+.|++|++|+++|++.+++|||.+|.++++.. +..+..+++|++|| +..++...+
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g-~~~~~~~~~ 79 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFG-ELALLTNSR 79 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceec-hhhhccCCC
Confidence 578899999999999999999999999999999999999999999999852 35788999999999 666652111
Q ss_pred CCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHH
Q psy8545 275 NGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAH 330 (547)
Q Consensus 275 ~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~ 330 (547)
.+...+++|.++|.++.++.++|.+.+..++.+...+..
T Consensus 80 -----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 118 (120)
T smart00100 80 -----------------RAASATAVALELATLLRIDFRDFLQLLQENPQLLLELLL 118 (120)
T ss_pred -----------------cccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHHh
Confidence 126679999999999999999999999999988776653
No 11
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.35 E-value=1.3e-11 Score=118.74 Aligned_cols=127 Identities=21% Similarity=0.386 Sum_probs=109.1
Q ss_pred cchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEc---C--eEEEEcCCCCeechhhhhhhc
Q psy8545 198 LPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQN---G--MVVAILGKGDLVGCDISMWLS 272 (547)
Q Consensus 198 iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~---~--~vl~~l~~Gd~FG~eisl~~~ 272 (547)
.+.|...+.+....+......+.+++|++|+++||+++++|+|.+|.++++.. | .++..+++||+|| +.+++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg-~~~l~~~ 83 (214)
T COG0664 5 NPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFG-ELALLGG 83 (214)
T ss_pred ccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhh-hHHHhcC
Confidence 55666677777777778889999999999999999999999999999999962 2 4788999999999 8888765
Q ss_pred cCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhhhh
Q psy8545 273 EKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIREGY 344 (547)
Q Consensus 273 ~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr~~~ 344 (547)
.+ +.++++|+++|+++.++++.|.+++..+|.+...+...+.+++........
T Consensus 84 ~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~~~~~~~~ 136 (214)
T COG0664 84 DP-------------------RSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLRQALERLS 136 (214)
T ss_pred CC-------------------ccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 778999999999999999999999888999999999988888875544443
No 12
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.35 E-value=5.6e-12 Score=104.66 Aligned_cols=85 Identities=27% Similarity=0.478 Sum_probs=76.6
Q ss_pred cccCCCcEEEccCCCCCcEEEEEceeEEEEEc---C--eEEEEcCCCCeechhhhhhhccCCCCCCCCCCCCCCCCCccc
Q psy8545 219 NFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQN---G--MVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVK 293 (547)
Q Consensus 219 ~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~---~--~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~~~~~~~~~~ 293 (547)
+.|++|++|+++|+..+++|||++|.++++.. + .++..+++|++|| +..++.+.+
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g-~~~~~~~~~------------------- 61 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFG-EIELLTGKP------------------- 61 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEES-GHHHHHTSB-------------------
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeecccc-ceeecCCCc-------------------
Confidence 57899999999999999999999999999962 2 3588999999999 888887654
Q ss_pred eeEEEEEeeeeEEEEEeHHHHHHHHHhCHH
Q psy8545 294 SSCDVKALTYCDLKSVNVVGLVEVLRLYPE 323 (547)
Q Consensus 294 ~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~ 323 (547)
+.++++|.++|+++.|++++|.++++++|+
T Consensus 62 ~~~~~~a~~~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 62 SPFTVIALTDSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp BSSEEEESSSEEEEEEEHHHHHHHHHHSHH
T ss_pred cEEEEEEccCEEEEEEeHHHHHHHHHhCcC
Confidence 677999999999999999999999999996
No 13
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.34 E-value=1.5e-11 Score=121.66 Aligned_cols=125 Identities=21% Similarity=0.214 Sum_probs=103.7
Q ss_pred ccccchhhhccHHHHHHHHhhccc-cccCCCcEEEccCCCCCcEEEEEceeEEEEEc---C--eEEEEcCCCCeechhhh
Q psy8545 195 ILQLPIFEAATQGCLKLLSLHIRN-NFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQN---G--MVVAILGKGDLVGCDIS 268 (547)
Q Consensus 195 ll~iplF~~ls~~~l~~L~~~l~~-~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~---~--~vl~~l~~Gd~FG~eis 268 (547)
+.+.+.|..+++++++.|...... ..|++|+.|+++||.++++|+|.+|.|+++.. | .++..+.+||+|| +..
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g-~~~ 93 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVG-FDA 93 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceec-ccc
Confidence 445555557999999999988864 67999999999999999999999999999952 2 4788889999999 544
Q ss_pred hhhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Q psy8545 269 MWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNI 340 (547)
Q Consensus 269 l~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~l 340 (547)
+... + ...+++|+++|+++.|+++.|.+++..+|++...+.+.+.+++....
T Consensus 94 ~~~~-~-------------------~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~~~~~~ 145 (235)
T PRK11161 94 IGSG-Q-------------------HPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGEIKGDQ 145 (235)
T ss_pred ccCC-C-------------------CcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHHHHHHH
Confidence 4321 1 33588999999999999999999999999999999988887776443
No 14
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.31 E-value=1.3e-11 Score=131.42 Aligned_cols=125 Identities=21% Similarity=0.272 Sum_probs=112.5
Q ss_pred ccccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEc-CeEEEEcCCCCeechhhhhhh
Q psy8545 193 REILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQN-GMVVAILGKGDLVGCDISMWL 271 (547)
Q Consensus 193 ~~ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~-~~vl~~l~~Gd~FG~eisl~~ 271 (547)
+.+.++|.|..++++++.+|...+....|.+||.|+..|.+.+++|+|.+|.|+++.+ +.++..+..||.|| -.+++.
T Consensus 7 ~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~v~~~~~~gdlFg-~~~l~~ 85 (610)
T COG2905 7 QFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGEVLDRLAAGDLFG-FSSLFT 85 (610)
T ss_pred HHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCeeeeeeccCcccc-chhhcc
Confidence 3455799999999999999999999999999999999999999999999999999875 56799999999999 788776
Q ss_pred ccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q psy8545 272 SEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLT 337 (547)
Q Consensus 272 ~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~ 337 (547)
..+ ....+.|.+++.++.|+++.|.+++.++|+++..|...+..|++
T Consensus 86 ~~~-------------------~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~ 132 (610)
T COG2905 86 ELN-------------------KQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLR 132 (610)
T ss_pred cCC-------------------CcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 543 33478888999999999999999999999999999988888776
No 15
>KOG1113|consensus
Probab=99.23 E-value=8.4e-12 Score=126.18 Aligned_cols=118 Identities=15% Similarity=0.218 Sum_probs=106.6
Q ss_pred ccccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeechhhhhhhc
Q psy8545 193 REILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVGCDISMWLS 272 (547)
Q Consensus 193 ~~ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG~eisl~~~ 272 (547)
..+.+.-+|.+++++.+..+...+....+..|+.|++||+.++.+|+|-+|++.++.++.-+..+++|..|| |++++.+
T Consensus 122 ~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~~~v~~~~~g~sFG-ElALmyn 200 (368)
T KOG1113|consen 122 EAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNGTYVTTYSPGGSFG-ELALMYN 200 (368)
T ss_pred HHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECCeEEeeeCCCCchh-hhHhhhC
Confidence 334567899999999999999999999999999999999999999999999999999999999999999999 9999987
Q ss_pred cCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHH
Q psy8545 273 EKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAH 330 (547)
Q Consensus 273 ~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~ 330 (547)
.| |.+|+.|.+++.+|.|++..|..++-.+..-..++..
T Consensus 201 ~P-------------------RaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~ 239 (368)
T KOG1113|consen 201 PP-------------------RAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYE 239 (368)
T ss_pred CC-------------------cccceeeccccceEEEeeceeEEEeeccchhhhhhhh
Confidence 66 8899999999999999999999887776555554443
No 16
>KOG0614|consensus
Probab=99.18 E-value=1.5e-11 Score=129.32 Aligned_cols=107 Identities=18% Similarity=0.313 Sum_probs=100.3
Q ss_pred ccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeechhhhhhhccC
Q psy8545 195 ILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVGCDISMWLSEK 274 (547)
Q Consensus 195 ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG~eisl~~~~p 274 (547)
+.+..|++++...++++++.+|.+..|.+|.+|+++||+++++|++..|+++|.+++..+..+++|.+|| |++++.+
T Consensus 156 i~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~g~ll~~m~~gtvFG-ELAILyn-- 232 (732)
T KOG0614|consen 156 IQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSREGKLLGKMGAGTVFG-ELAILYN-- 232 (732)
T ss_pred HHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeCCeeeeccCCchhhh-HHHHHhC--
Confidence 4568899999999999999999999999999999999999999999999999999999999999999999 8998864
Q ss_pred CCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhC
Q psy8545 275 NGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLY 321 (547)
Q Consensus 275 ~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~ 321 (547)
+.|+++|+|+++|.+|.|+++.|+.++...
T Consensus 233 -----------------ctRtAsV~alt~~~lWaidR~vFq~IM~~t 262 (732)
T KOG0614|consen 233 -----------------CTRTASVRALTDVRLWAIDREVFQAIMMRT 262 (732)
T ss_pred -----------------CcchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 449999999999999999999999998654
No 17
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.17 E-value=2.6e-10 Score=109.01 Aligned_cols=100 Identities=17% Similarity=0.344 Sum_probs=85.1
Q ss_pred CcEEEccCCCCCcEEEEEceeEEEEE---cC--eEEEEcCCCCeechhhhhhhccCCCCCCCCCCCCCCCCCccceeEEE
Q psy8545 224 GEYLIHKGDHLSSIYYLCNGSMEVVQ---NG--MVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDV 298 (547)
Q Consensus 224 ge~I~~qGd~~~~lYfI~~G~V~v~~---~~--~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~~~~~~~~~~~~~tv 298 (547)
|+.|+++||+.+++|+|.+|.|+++. +| .++..+++|++|| +.+++.+.+. ++.+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G-~~~~~~~~~~-----------------~~~~~~ 62 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFG-VLSLITGHRS-----------------DRFYHA 62 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEee-eeeeccCCCC-----------------ccceEE
Confidence 78999999999999999999999985 33 3689999999999 7777654321 134689
Q ss_pred EEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Q psy8545 299 KALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIR 341 (547)
Q Consensus 299 ~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr 341 (547)
+|+++|+++.|++++|.+++..+|.+...+.+.+.+++.....
T Consensus 63 ~A~~~~~v~~i~~~~~~~l~~~~p~l~~~~~~~l~~~l~~~~~ 105 (193)
T TIGR03697 63 VAFTRVELLAVPIEQVEKAIEEDPDLSMLLLQGLSSRILQTEM 105 (193)
T ss_pred EEecceEEEEeeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888775433
No 18
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.15 E-value=3.7e-10 Score=111.80 Aligned_cols=107 Identities=13% Similarity=0.130 Sum_probs=90.5
Q ss_pred HHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE---cC--eEEEEcCCCCeechhhhhhhccCCCCCCCCCCCCC
Q psy8545 212 LSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---NG--MVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGT 286 (547)
Q Consensus 212 L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~~--~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~~~ 286 (547)
+....+.+.|++|++|+.+||.++++|||++|.|+++. +| .++..+.+|++|| +. .+.
T Consensus 34 ~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG-~~---~~~------------- 96 (230)
T PRK09391 34 AGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFG-LE---SGS------------- 96 (230)
T ss_pred ccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceec-cc---CCC-------------
Confidence 34445788899999999999999999999999999985 33 4788889999999 32 111
Q ss_pred CCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Q psy8545 287 GVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIR 341 (547)
Q Consensus 287 ~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr 341 (547)
++.++++|+++|+++.|++++|.+++..+|++...+.+.+.+++.....
T Consensus 97 ------~~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~ 145 (230)
T PRK09391 97 ------THRFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLTAGGLRHAQD 145 (230)
T ss_pred ------cCCeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHHHHHHHHHHH
Confidence 1567999999999999999999999999999999999988888775433
No 19
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.12 E-value=4.7e-10 Score=92.26 Aligned_cols=54 Identities=35% Similarity=0.757 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHH
Q psy8545 70 YITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQ 123 (547)
Q Consensus 70 Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~ 123 (547)
|..++||++.|+||+||||+.|.+..+++++++.+++|..++++.++.+++.+.
T Consensus 25 ~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 25 FIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677999999999999999999999999999999999999999999999998764
No 20
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.11 E-value=2.2e-10 Score=123.25 Aligned_cols=112 Identities=16% Similarity=0.152 Sum_probs=96.5
Q ss_pred ccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEc----CeEEEEcCCCCeechhhhhh
Q psy8545 195 ILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQN----GMVVAILGKGDLVGCDISMW 270 (547)
Q Consensus 195 ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~----~~vl~~l~~Gd~FG~eisl~ 270 (547)
+.++++|++++++.+..|..+++.+.|++|++|+++||..+.+|+|++|.|+++.. +.++..+++|++|| +. +
T Consensus 10 L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG-~~--l 86 (413)
T PLN02868 10 LGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFG-YG--L 86 (413)
T ss_pred HhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEee-hh--h
Confidence 45799999999999999999999999999999999999999999999999999862 35788899999999 54 3
Q ss_pred hccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHH
Q psy8545 271 LSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEF 328 (547)
Q Consensus 271 ~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~ 328 (547)
.+. ++.++++|.++|+++.|+++.|..+...++-...+-
T Consensus 87 ~~~-------------------~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~~~~~~ 125 (413)
T PLN02868 87 SGS-------------------VHSADVVAVSELTCLVLPHEHCHLLSPKSIWDSDKT 125 (413)
T ss_pred CCC-------------------CcccEEEECCCEEEEEEcHHHHhhhcccccccccCC
Confidence 322 267899999999999999999999887776544433
No 21
>KOG0614|consensus
Probab=99.09 E-value=1.1e-10 Score=123.00 Aligned_cols=117 Identities=16% Similarity=0.347 Sum_probs=102.2
Q ss_pred ccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEcC------eEEEEcCCCCeechhhh
Q psy8545 195 ILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNG------MVVAILGKGDLVGCDIS 268 (547)
Q Consensus 195 ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~------~vl~~l~~Gd~FG~eis 268 (547)
+..+|+|++++++.+..++..++..+|..|++|+++|+.++.+|+|.+|.|.+.+.+ ..+..+++||+|| |-+
T Consensus 274 Lrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~FG-E~a 352 (732)
T KOG0614|consen 274 LRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYFG-ERA 352 (732)
T ss_pred HHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccchhh-HHH
Confidence 446999999999999999999999999999999999999999999999999998633 3688999999999 777
Q ss_pred hhhccCCCCCCCCCCCCCCCCCccceeEEEEEeee-eEEEEEeHHHHHHHHHhCHHHHHHHHHH
Q psy8545 269 MWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTY-CDLKSVNVVGLVEVLRLYPEYQQEFAHD 331 (547)
Q Consensus 269 l~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~-c~ll~I~~~~f~~ll~~~P~~~~~~~~~ 331 (547)
++... .|++++.|..+ ++++.|+++.|..++-...++.++-...
T Consensus 353 l~~ed-------------------vRtAniia~~~gv~cl~lDresF~~liG~l~~l~ek~~~D 397 (732)
T KOG0614|consen 353 LLGED-------------------VRTANIIAQAPGVECLTLDRESFKKLIGDLEELKEKDYGD 397 (732)
T ss_pred hhccC-------------------ccchhhhccCCCceEEEecHHHHHHhcccHHHhhhhhccc
Confidence 76543 28899999987 9999999999999998888877644433
No 22
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.01 E-value=2.7e-09 Score=102.95 Aligned_cols=98 Identities=13% Similarity=0.232 Sum_probs=79.1
Q ss_pred ccccccCCCcEEEccCC--CCCcEEEEEceeEEEEE---cC--eEEEEcCCCCeechhhhhhhccCCCCCCCCCCCCCCC
Q psy8545 216 IRNNFCAPGEYLIHKGD--HLSSIYYLCNGSMEVVQ---NG--MVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGV 288 (547)
Q Consensus 216 l~~~~y~~ge~I~~qGd--~~~~lYfI~~G~V~v~~---~~--~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~~~~~ 288 (547)
++...|++|++|+.+|| ..+++|+|++|.|+++. +| .++..+++||+|| +..+. ..+
T Consensus 6 ~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G-~~~~~-~~~-------------- 69 (202)
T PRK13918 6 VDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFG-EEALA-GAE-------------- 69 (202)
T ss_pred cceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeec-hHHhc-CCC--------------
Confidence 56778999999999999 77999999999999986 23 4788899999999 65543 222
Q ss_pred CCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Q psy8545 289 DPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNI 340 (547)
Q Consensus 289 ~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~l 340 (547)
++++++|+++|+++.|+++.| +|++...+...+.+++....
T Consensus 70 -----~~~~~~A~~~~~v~~i~~~~~------~~~~~~~l~~~l~~~~~~~~ 110 (202)
T PRK13918 70 -----RAYFAEAVTDSRIDVLNPALM------SAEDNLVLTQHLVRTLARAY 110 (202)
T ss_pred -----CCceEEEcCceEEEEEEHHHc------ChhhHHHHHHHHHHHHHHHH
Confidence 567899999999999999987 57777777777666665443
No 23
>KOG1113|consensus
Probab=98.80 E-value=8.4e-09 Score=104.70 Aligned_cols=113 Identities=19% Similarity=0.292 Sum_probs=100.7
Q ss_pred cccccc-ccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE--cCeEEEEcCCCCeechhh
Q psy8545 191 LHREIL-QLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ--NGMVVAILGKGDLVGCDI 267 (547)
Q Consensus 191 l~~~ll-~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~--~~~vl~~l~~Gd~FG~ei 267 (547)
+|.+.+ ++|+++.+...+...++..+....|++|+.|+.+|+.++.+|+|.+|+|.+.. ++.++ .+++||+|| |+
T Consensus 237 My~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~v~v-kl~~~dyfg-e~ 314 (368)
T KOG1113|consen 237 MYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDGVEV-KLKKGDYFG-EL 314 (368)
T ss_pred hhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCCeEE-Eechhhhcc-hH
Confidence 455555 59999999999999999999999999999999999999999999999999985 44445 999999999 99
Q ss_pred hhhhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHH
Q psy8545 268 SMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEY 324 (547)
Q Consensus 268 sl~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~ 324 (547)
+++.+.| +.++|.|.+...+..+++..|..++.-+-+.
T Consensus 315 al~~~~p-------------------r~Atv~a~~~~kc~~~dk~~ferllgpc~di 352 (368)
T KOG1113|consen 315 ALLKNLP-------------------RAATVVAKGRLKCAKLDKPRFERLLGPCQDI 352 (368)
T ss_pred HHHhhch-------------------hhceeeccCCceeeeeChHHHHHHhhHHHHH
Confidence 9998876 8889999999999999999999998765443
No 24
>KOG3713|consensus
Probab=98.78 E-value=1e-08 Score=108.35 Aligned_cols=107 Identities=19% Similarity=0.240 Sum_probs=83.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCchhhhhHhhhhccCCCCchhHHHHHHHHHHHHHHhccc
Q psy8545 6 QYSALILTLLMLSFTLVAHWLACLWFVIADYERNRYRQDWDLGWIHTLAERLKVNVSEISHRESYITALYFTCSSLTSVG 85 (547)
Q Consensus 6 ~y~~l~l~kL~~~~ll~~H~~ACiw~~i~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~s~~~~Yi~SlYwai~TltTVG 85 (547)
+.++-.+..|++++.+-+-+||-+-|++...+... .+..--.++|||+.||||||
T Consensus 339 r~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~~~-------------------------~FtSIPa~~WWaiVTMTTVG 393 (477)
T KOG3713|consen 339 RRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEPDT-------------------------KFTSIPAGFWWAVVTMTTVG 393 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-------------------------CCccccchhheeeEEEeeec
Confidence 45566677788888888888898888887765321 01222348999999999999
Q ss_pred CCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHhhHHHHHHHHH
Q psy8545 86 FGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRRSLYQTKWR 137 (547)
Q Consensus 86 yGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~~~~~~~~~~k~~ 137 (547)
|||++|.|..++++...+++.|+++.|.-|..|.+-+...++..+..++...
T Consensus 394 YGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~~~~ 445 (477)
T KOG3713|consen 394 YGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREKAPK 445 (477)
T ss_pred ccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999988888777666555444433
No 25
>KOG1419|consensus
Probab=98.30 E-value=2e-06 Score=91.80 Aligned_cols=92 Identities=21% Similarity=0.317 Sum_probs=73.4
Q ss_pred CCchhHHHHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhhhh
Q psy8545 63 EISHRESYITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRRSLYQTKWRDLKEF 142 (547)
Q Consensus 63 ~~s~~~~Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~~~~~~~~~~k~~~l~~f 142 (547)
....+..|..|+||+++|+|||||||.+|.|...++++.++.++|+.+||.--|.+++=+...-... ..=++|
T Consensus 263 ~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq-------~RQKHf 335 (654)
T KOG1419|consen 263 TNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQ-------HRQKHF 335 (654)
T ss_pred ccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHH-------HHHHHH
Confidence 3456778999999999999999999999999999999999999999999998888887655432111 122467
Q ss_pred hhccCCchHHHHhhhhhhh
Q psy8545 143 LTLNQIPKELKQRMQDYFQ 161 (547)
Q Consensus 143 m~~~~ip~~L~~rv~~Y~~ 161 (547)
-++++.-..|.+-.=+||.
T Consensus 336 ~rrr~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 336 NRRRNPAASLIQCAWRYYA 354 (654)
T ss_pred HhhcchHHHHHHHHHHHHh
Confidence 7788877777777766664
No 26
>KOG2968|consensus
Probab=98.26 E-value=1.1e-06 Score=98.12 Aligned_cols=114 Identities=23% Similarity=0.347 Sum_probs=98.0
Q ss_pred HHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEc-----CeEEEEcCCCCeechhhhhhhccCCCCCCCCC
Q psy8545 208 CLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQN-----GMVVAILGKGDLVGCDISMWLSEKNGGSAVGP 282 (547)
Q Consensus 208 ~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~-----~~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~ 282 (547)
++..+-..+......+|+.+++|||..+.+|+|++|.++...+ ..++..++.||.+| +..+++..+
T Consensus 500 ~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG-~~E~lt~~~-------- 570 (1158)
T KOG2968|consen 500 FLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIG-EVEMLTKQP-------- 570 (1158)
T ss_pred HHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceee-hhHHhhcCC--------
Confidence 4444555567778899999999999999999999999998743 24788999999999 888888766
Q ss_pred CCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Q psy8545 283 GAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIR 341 (547)
Q Consensus 283 ~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr 341 (547)
|..++.|+.++++.+|+..-|.-+..+||.+-.++.+.+.+++.-.++
T Consensus 571 -----------R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~~g~l~ 618 (1158)
T KOG2968|consen 571 -----------RATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKILGSLQ 618 (1158)
T ss_pred -----------ccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHhhhhhc
Confidence 777999999999999999999999999999999999988888764443
No 27
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.23 E-value=5.2e-06 Score=88.52 Aligned_cols=52 Identities=21% Similarity=0.558 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHH
Q psy8545 70 YITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAI 121 (547)
Q Consensus 70 Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~i 121 (547)
+..|+||++.|+|||||||+.|.+...++|+++++++|..++++.++.+...
T Consensus 169 ~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p 220 (393)
T PRK10537 169 LSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGP 220 (393)
T ss_pred HHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5669999999999999999999999999999999999999999998887763
No 28
>KOG4390|consensus
Probab=98.17 E-value=5.9e-07 Score=91.86 Aligned_cols=90 Identities=24% Similarity=0.368 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCchhhhhHhhhhccCCCCchhHHHHHHHHHHHHHHhcccCCCcc
Q psy8545 11 ILTLLMLSFTLVAHWLACLWFVIADYERNRYRQDWDLGWIHTLAERLKVNVSEISHRESYITALYFTCSSLTSVGFGNVS 90 (547)
Q Consensus 11 ~l~kL~~~~ll~~H~~ACiw~~i~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~s~~~~Yi~SlYwai~TltTVGyGdi~ 90 (547)
.|..|++.+.+.+-++|-+.|+...-.. ++.+..--.+|||++.||||.||||.+
T Consensus 323 ELGFLlFSLtMAIIIFATvMfYAEKg~~-------------------------at~FTsIPaaFWYTIVTmTTLGYGDMV 377 (632)
T KOG4390|consen 323 ELGFLLFSLTMAIIIFATVMFYAEKGSS-------------------------ATKFTSIPAAFWYTIVTMTTLGYGDMV 377 (632)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhcccc-------------------------ccccccCcHhHhhheeeeeeccccccc
Confidence 3667777888888888888887754321 122222345899999999999999999
Q ss_pred ccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHH
Q psy8545 91 ANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRM 125 (547)
Q Consensus 91 p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~ 125 (547)
|.|...++|..++.+.|+++.|.-+..|.+-+.+.
T Consensus 378 p~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRI 412 (632)
T KOG4390|consen 378 PSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRI 412 (632)
T ss_pred hHHHHHHHhhhhhcccceEEEeccccEEEechhHH
Confidence 99999999999999999999887665554444443
No 29
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=98.11 E-value=1.1e-05 Score=84.19 Aligned_cols=103 Identities=25% Similarity=0.397 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCchhhhhHhhhhccCCCCchhHHHHHHHHHHHHHHhcccCCC--c
Q psy8545 12 LTLLMLSFTLVAHWLACLWFVIADYERNRYRQDWDLGWIHTLAERLKVNVSEISHRESYITALYFTCSSLTSVGFGN--V 89 (547)
Q Consensus 12 l~kL~~~~ll~~H~~ACiw~~i~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~s~~~~Yi~SlYwai~TltTVGyGd--i 89 (547)
++.+++.+++..-++|++||+++....+-....-..+|-+ .......+..+|+|++.|+||+|||. +
T Consensus 38 l~~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~-----------Cv~~~~~f~~aF~FSveT~tTIGYG~~~~ 106 (336)
T PF01007_consen 38 LLLFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTP-----------CVSNVNSFTSAFLFSVETQTTIGYGSRYP 106 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-T-----------SECT-TTHHHHHHHHHHHHTT---SSSEB
T ss_pred eehhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCC-----------ceecccchhhheeEEEEEEEEeccCCccc
Confidence 4444456666777799999999876432111000001111 11223458889999999999999998 5
Q ss_pred cccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHH
Q psy8545 90 SANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRM 125 (547)
Q Consensus 90 ~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~ 125 (547)
.|....-.++.++-+++|.++.|+++|.+..=+.+-
T Consensus 107 ~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP 142 (336)
T PF01007_consen 107 TPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRP 142 (336)
T ss_dssp -CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 566666677788889999999999999988766553
No 30
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=98.08 E-value=0.00012 Score=66.66 Aligned_cols=128 Identities=15% Similarity=0.073 Sum_probs=101.8
Q ss_pred hccHHHHHHHHhh-ccccccCCCcEEEccCC-CCCcEEEEEceeEEEEEcCeEEEEcCCCCeechhhhhhhccCCCCCCC
Q psy8545 203 AATQGCLKLLSLH-IRNNFCAPGEYLIHKGD-HLSSIYYLCNGSMEVVQNGMVVAILGKGDLVGCDISMWLSEKNGGSAV 280 (547)
Q Consensus 203 ~ls~~~l~~L~~~-l~~~~y~~ge~I~~qGd-~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG~eisl~~~~p~~~s~~ 280 (547)
+.+....++|+.+ .+.....+|+.-..||. +.+.+-++++|.+++..++..+..+.|-++.. .-......++.
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g~fLH~I~p~qFlD-SPEW~s~~~s~---- 88 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDGRFLHYIYPYQFLD-SPEWESLRPSE---- 88 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECCEeeEeeccccccc-ChhhhccccCC----
Confidence 4577778888777 56788999999988885 45799999999999999999999999988886 33322221211
Q ss_pred CCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhhhhh
Q psy8545 281 GPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIREGYE 345 (547)
Q Consensus 281 ~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr~~~e 345 (547)
...-..|+.|.++|..++.+++.+..++.+.|-++.-|...+.++++.++-...+
T Consensus 89 ----------~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF~~liGkDI~~KLy~ln~ 143 (153)
T PF04831_consen 89 ----------DDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAVFSNLIGKDIAEKLYSLNE 143 (153)
T ss_pred ----------CCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1235679999999999999999999999999999999999888888865544433
No 31
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=98.02 E-value=2.1e-05 Score=74.31 Aligned_cols=100 Identities=17% Similarity=0.318 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCchhhhhHhhhhccCCCCchhHHHHHHHHHHHHHHhcccCCCc
Q psy8545 10 LILTLLMLSFTLVAHWLACLWFVIADYERNRYRQDWDLGWIHTLAERLKVNVSEISHRESYITALYFTCSSLTSVGFGNV 89 (547)
Q Consensus 10 l~l~kL~~~~ll~~H~~ACiw~~i~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~s~~~~Yi~SlYwai~TltTVGyGdi 89 (547)
..+.++++.+++++|++||+++.+........... .+- ...+......++.|..|+||++.++|+.|+||+
T Consensus 95 ~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~---~~~------~~~~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~ 165 (200)
T PF00520_consen 95 PDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDP---TWD------SENDIYGYENFDSFGESLYWLFQTMTGEGWGDV 165 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTS----------SS----------SSTHHHHSSHHHHHHHHHHHHTTTTCCCC
T ss_pred ccccccccccccccccccchhheeccccccccccc---ccc------cccccccccccccccccccccccccccCCcccc
Confidence 34778888899999999999998887654322110 000 011334456778899999999999999999999
Q ss_pred ccc-----CcchhHHH-HHHHHHhhhHHHHhhhhH
Q psy8545 90 SAN-----TSAEKIFS-ICTMLIGALMHAVVFGNV 118 (547)
Q Consensus 90 ~p~-----t~~E~if~-i~~mi~G~l~~a~iig~i 118 (547)
.+. +..+.++. +++.+.+.++++.++|.|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 166 MPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 887 78888888 555555567788888764
No 32
>KOG3684|consensus
Probab=97.97 E-value=3.2e-05 Score=81.40 Aligned_cols=92 Identities=17% Similarity=0.365 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhhhhhhc
Q psy8545 66 HRESYITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRRSLYQTKWRDLKEFLTL 145 (547)
Q Consensus 66 ~~~~Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~~~~~~~~~~k~~~l~~fm~~ 145 (547)
...-|+-++++..+|..++||||++|.|...+.++++.-++|+.+.|.+++.++.-+ +..+--+.+++||-.
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKL--------eLt~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL--------ELTKAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 445688999999999999999999999999999999999999999999888876543 233344678999999
Q ss_pred cCCchHHHHhhhhhhhhhhc
Q psy8545 146 NQIPKELKQRMQDYFQTMWS 165 (547)
Q Consensus 146 ~~ip~~L~~rv~~Y~~~~~~ 165 (547)
.++.++++.-..+-++..|-
T Consensus 356 tqLTk~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999998888777776664
No 33
>KOG1545|consensus
Probab=97.85 E-value=3.4e-07 Score=92.94 Aligned_cols=57 Identities=23% Similarity=0.415 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHhh
Q psy8545 72 TALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSR 128 (547)
Q Consensus 72 ~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~~~~ 128 (547)
.|||||+.|||||||||..|.|...+++..++.|.|++-.|.-+..|.+-+...+.+
T Consensus 396 daFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFnyFYhr 452 (507)
T KOG1545|consen 396 DAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 452 (507)
T ss_pred ccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEecccceeec
Confidence 489999999999999999999999999999999999998888777766555444433
No 34
>KOG2968|consensus
Probab=97.64 E-value=0.00019 Score=80.66 Aligned_cols=111 Identities=20% Similarity=0.269 Sum_probs=93.2
Q ss_pred hhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE---cC--eEEEEcCCCCeechhhhhhhccCCCCCCCCCCCCCCC
Q psy8545 214 LHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---NG--MVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGV 288 (547)
Q Consensus 214 ~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~~--~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~~~~~ 288 (547)
.+++...+..||+|++.|++.+.+|.+.+|.+.+.- ++ ..+....+|+.|-.-.+++...+...
T Consensus 113 rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tSllSiLd~l~~~p----------- 181 (1158)
T KOG2968|consen 113 RHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTSLLSILDSLPGFP----------- 181 (1158)
T ss_pred hhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHhHHHHHHhccCCC-----------
Confidence 788889999999999999999999999999999984 22 47888999988886666664443222
Q ss_pred CCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q psy8545 289 DPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLT 337 (547)
Q Consensus 289 ~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~ 337 (547)
...+...++|.++|.+..++...|.++..+||+-..++.+.+.-||.
T Consensus 182 --s~~~~i~akA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvmTRLq 228 (1158)
T KOG2968|consen 182 --SLSRTIAAKAATDCTVARIPYTSFRESFHKNPESSIRIIQVVMTRLQ 228 (1158)
T ss_pred --cccceeeeeeecCceEEEeccchhhhhhccChHHHHHHHHHHHHHHH
Confidence 23477899999999999999999999999999999988888777765
No 35
>KOG1420|consensus
Probab=97.56 E-value=2.4e-05 Score=83.69 Aligned_cols=64 Identities=25% Similarity=0.472 Sum_probs=57.7
Q ss_pred chhHHHHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHhh
Q psy8545 65 SHRESYITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSR 128 (547)
Q Consensus 65 s~~~~Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~~~~ 128 (547)
.....|..|.||.+.||+||||||+...|...+.|.+++++.|..+||-.+..+..++.+.++-
T Consensus 284 ~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~ky 347 (1103)
T KOG1420|consen 284 NHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKY 347 (1103)
T ss_pred cccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHcccccc
Confidence 3456799999999999999999999999999999999999999999999999999988765443
No 36
>KOG1418|consensus
Probab=97.52 E-value=9.5e-05 Score=78.80 Aligned_cols=57 Identities=25% Similarity=0.589 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHH
Q psy8545 69 SYITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRM 125 (547)
Q Consensus 69 ~Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~ 125 (547)
-+..|+||+++++||+|||+++|.|..+++|+|+..++|+=++..+++.+...+...
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~ 171 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADS 171 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999999999999999999999999988877654
No 37
>KOG3827|consensus
Probab=97.41 E-value=0.00026 Score=73.32 Aligned_cols=101 Identities=19% Similarity=0.327 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCCCCCchhhhhHhhhhccCCCCchhHHHHHHHHHHHHHHhcccCCCccccC-
Q psy8545 15 LMLSFTLVAHWLACLWFVIADYERNRYRQDWDLGWIHTLAERLKVNVSEISHRESYITALYFTCSSLTSVGFGNVSANT- 93 (547)
Q Consensus 15 L~~~~ll~~H~~ACiw~~i~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~s~~~~Yi~SlYwai~TltTVGyGdi~p~t- 93 (547)
+.+.|++..-+||++||+|+....+-..+....+|.+ ....-...+.||.|++-|=||+|||--.++.
T Consensus 69 F~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tp-----------CV~nV~sf~sAFLFSiETQtTIGYG~R~vTee 137 (400)
T KOG3827|consen 69 FSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTP-----------CVMNVHSFTSAFLFSIETQTTIGYGFRYVTEE 137 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCc-----------ceeeccchhhhheeeeeeeeeeeccccccCcc
Confidence 3344444455589999999988764332211112222 1223344677999999999999999765554
Q ss_pred -cchhHHHHHHHHHhhhHHHHhhhhHHHHHHHHH
Q psy8545 94 -SAEKIFSICTMLIGALMHAVVFGNVTAIIQRMY 126 (547)
Q Consensus 94 -~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~~ 126 (547)
..-.+..++-+|+|+++-|+++|.+..=+.+-.
T Consensus 138 CP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPk 171 (400)
T KOG3827|consen 138 CPEAIFLLVLQSILGVIINAFMVGAIFAKIARPK 171 (400)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 334456677789999999999999887666543
No 38
>KOG4404|consensus
Probab=97.33 E-value=0.0005 Score=69.68 Aligned_cols=59 Identities=22% Similarity=0.403 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhcccCCCccccCc-------ch-hHHHHHHHHHhhhHHHHhhhhHHHHHHHHHhh
Q psy8545 70 YITALYFTCSSLTSVGFGNVSANTS-------AE-KIFSICTMLIGALMHAVVFGNVTAIIQRMYSR 128 (547)
Q Consensus 70 Yi~SlYwai~TltTVGyGdi~p~t~-------~E-~if~i~~mi~G~l~~a~iig~i~~ii~~~~~~ 128 (547)
|+.|+||.++|+||+||||.++.-. .+ ..++.+.+++|..+++..++.+.-.+..++..
T Consensus 187 yfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~~ 253 (350)
T KOG4404|consen 187 YFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNAE 253 (350)
T ss_pred hhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 8889999999999999999987643 23 35678888899888888888777766665543
No 39
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.24 E-value=0.0068 Score=58.80 Aligned_cols=108 Identities=6% Similarity=0.004 Sum_probs=77.6
Q ss_pred HHHHHhhccccccCCCcEE-EccCCCCCcEEEEEceeEEEEE-cCeEEEEcCCCCeechhhhhhhccCCCCCCCCCCCCC
Q psy8545 209 LKLLSLHIRNNFCAPGEYL-IHKGDHLSSIYYLCNGSMEVVQ-NGMVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGT 286 (547)
Q Consensus 209 l~~L~~~l~~~~y~~ge~I-~~qGd~~~~lYfI~~G~V~v~~-~~~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~~~ 286 (547)
++.|..+.+...+++|..+ +........+|+|.+|.|.+.+ ++..+.+.....+|| -...+...
T Consensus 15 ~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr~d~ll~~t~~aP~IlG-l~~~~~~~------------- 80 (207)
T PRK11832 15 DKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRREENVLIGITQAPYIMG-LADGLMKN------------- 80 (207)
T ss_pred HHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEecCCeEEEeccCCeEee-cccccCCC-------------
Confidence 4456666778889999997 5555555789999999999965 445778888889999 22211110
Q ss_pred CCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q psy8545 287 GVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLT 337 (547)
Q Consensus 287 ~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~ 337 (547)
...+..+|.++|++..++.++|.++++++. +.+.+...+...+.
T Consensus 81 ------~~~~~l~ae~~c~~~~i~~~~~~~iie~~~-LW~~~~~~l~~~~~ 124 (207)
T PRK11832 81 ------DIPYKLISEGNCTGYHLPAKQTITLIEQNQ-LWRDAFYWLAWQNR 124 (207)
T ss_pred ------CceEEEEEcCccEEEEeeHHHHHHHHHHhc-hHHHHHHHHHHHHH
Confidence 134689999999999999999999999886 34444444444443
No 40
>KOG3542|consensus
Probab=96.25 E-value=0.011 Score=65.08 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=83.5
Q ss_pred ccccchhhhccHHHHHHHHhhcccc-ccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeechhhhhhhcc
Q psy8545 195 ILQLPIFEAATQGCLKLLSLHIRNN-FCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVGCDISMWLSE 273 (547)
Q Consensus 195 ll~iplF~~ls~~~l~~L~~~l~~~-~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG~eisl~~~~ 273 (547)
+-+.|.|.+++-...++|+..|... .-..|.+|+..|+..++.++|++|.|++...+.....+.-|+.||.+-..-.+
T Consensus 283 MhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~e~l~mGnSFG~~PT~dkq- 361 (1283)
T KOG3542|consen 283 MHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKREELKMGNSFGAEPTPDKQ- 361 (1283)
T ss_pred HHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCceEEeecccccCCCCCcchh-
Confidence 3468999999999999998887544 45789999999999999999999999999977777789999999954322111
Q ss_pred CCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhC
Q psy8545 274 KNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLY 321 (547)
Q Consensus 274 p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~ 321 (547)
..--.--.-+.+|+..+|...||-.++..-
T Consensus 362 ------------------ym~G~mRTkVDDCqFVciaqqDycrIln~v 391 (1283)
T KOG3542|consen 362 ------------------YMIGEMRTKVDDCQFVCIAQQDYCRILNTV 391 (1283)
T ss_pred ------------------hhhhhhheecccceEEEeehhhHHHHHHHH
Confidence 000011134789999999999998887654
No 41
>KOG4404|consensus
Probab=95.94 E-value=0.0018 Score=65.82 Aligned_cols=51 Identities=25% Similarity=0.597 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHH
Q psy8545 69 SYITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVT 119 (547)
Q Consensus 69 ~Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~ 119 (547)
+..-||||+++.+||+|||-.+|.|...++|+|+.-++|+-+--.+|..+.
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~g 130 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIG 130 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHH
Confidence 455699999999999999999999999999999999999866555554443
No 42
>KOG1418|consensus
Probab=94.34 E-value=0.0082 Score=63.91 Aligned_cols=48 Identities=33% Similarity=0.550 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhcccCCCccccCcchh--------HHHHHHHHHhhhHHHHhh
Q psy8545 68 ESYITALYFTCSSLTSVGFGNVSANTSAEK--------IFSICTMLIGALMHAVVF 115 (547)
Q Consensus 68 ~~Yi~SlYwai~TltTVGyGdi~p~t~~E~--------if~i~~mi~G~l~~a~ii 115 (547)
-.|+.|+||+++++||+||||+.|.+...+ .+..++.++|....+.+.
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 458889999999999999999999997755 577778888877777666
No 43
>KOG3542|consensus
Probab=91.66 E-value=0.28 Score=54.42 Aligned_cols=92 Identities=22% Similarity=0.158 Sum_probs=74.0
Q ss_pred cccccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeechhhhhhh
Q psy8545 192 HREILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVGCDISMWL 271 (547)
Q Consensus 192 ~~~ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG~eisl~~ 271 (547)
|..+-+...|.++-...++.++...+...++.+.++|+.|+.+...|++++|.|-+.+ .++-|...||...
T Consensus 36 ~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g-----qi~mp~~~fgkr~---- 106 (1283)
T KOG3542|consen 36 YEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG-----QIYMPYGCFGKRT---- 106 (1283)
T ss_pred HHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec-----ceecCcccccccc----
Confidence 4445578899999999999999999999999999999999999999999999997742 2345666777310
Q ss_pred ccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeH
Q psy8545 272 SEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNV 311 (547)
Q Consensus 272 ~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~ 311 (547)
...|++++-.++++++++++.
T Consensus 107 -------------------g~~r~~nclllq~semivid~ 127 (1283)
T KOG3542|consen 107 -------------------GQNRTHNCLLLQESEMIVIDY 127 (1283)
T ss_pred -------------------ccccccceeeecccceeeeec
Confidence 123788889999999998863
No 44
>KOG3676|consensus
Probab=82.86 E-value=21 Score=41.09 Aligned_cols=73 Identities=14% Similarity=0.377 Sum_probs=44.0
Q ss_pred hcccCCCccccCcc------hhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHhhH-HHHHHHHHHhhhhhhccCCchHHHH
Q psy8545 82 TSVGFGNVSANTSA------EKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRR-SLYQTKWRDLKEFLTLNQIPKELKQ 154 (547)
Q Consensus 82 tTVGyGdi~p~t~~------E~if~i~~mi~G~l~~a~iig~i~~ii~~~~~~~-~~~~~k~~~l~~fm~~~~ip~~L~~ 154 (547)
.|+|+||....... -.+|.++++++-+++.-.+|+-|+.........+ ...+....+ --.|-.+.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~-~iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAA-TILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHH-HHHHHHhcCCHHHHH
Confidence 57999998655433 1234455555556667777777777776665555 344433333 334556777877776
Q ss_pred h
Q psy8545 155 R 155 (547)
Q Consensus 155 r 155 (547)
+
T Consensus 680 ~ 680 (782)
T KOG3676|consen 680 R 680 (782)
T ss_pred H
Confidence 6
No 45
>KOG3193|consensus
Probab=81.18 E-value=0.58 Score=50.82 Aligned_cols=30 Identities=23% Similarity=0.543 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcccCCCccccCcchhHH
Q psy8545 70 YITALYFTCSSLTSVGFGNVSANTSAEKIF 99 (547)
Q Consensus 70 Yi~SlYwai~TltTVGyGdi~p~t~~E~if 99 (547)
.+.|+||.+.|.+||||||..|.-..-.+.
T Consensus 218 lf~s~y~v~vtfstvgygd~~pd~w~sql~ 247 (1087)
T KOG3193|consen 218 LFTSFYFVMVTFSTVGYGDWYPDYWASQLC 247 (1087)
T ss_pred eeeeEEEEEEEEeeccccccccccchhhHH
Confidence 345899999999999999999987554443
No 46
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=78.83 E-value=9.6 Score=44.18 Aligned_cols=94 Identities=13% Similarity=0.173 Sum_probs=53.1
Q ss_pred cchHHH-HHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCchhhhhHhhhhccCCCCchhHHHHHHHHHHHHHHhcc
Q psy8545 6 QYSALI-LTLLMLSFTLVAHWLACLWFVIADYERNRYRQDWDLGWIHTLAERLKVNVSEISHRESYITALYFTCSSLTSV 84 (547)
Q Consensus 6 ~y~~l~-l~kL~~~~ll~~H~~ACiw~~i~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~s~~~~Yi~SlYwai~TltTV 84 (547)
+|-+++ |.++++.++++.|+++++..+.-..... .|-.-+ ...-....++|+|.|++.....
T Consensus 444 EYRaLk~L~~Iv~~Y~~~~~llG~i~l~~wi~~~~--------~~~~~l---------~~~gin~~W~aiFhAVSAFnNA 506 (800)
T TIGR00934 444 EYRALKCLCSIVLVYFLGFNILGFVLLLPWINHVK--------TYSEVV---------RSKGVSPTWWGFFTAMSAFANL 506 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------cHHHHH---------hhcCccHHHHHHHHHHHHHhcC
Confidence 567776 7778889999999999776544332111 111100 1111224557999999999999
Q ss_pred cCCCccccCc-------chhHHHHHHHHHhhhHHHHhhhh
Q psy8545 85 GFGNVSANTS-------AEKIFSICTMLIGALMHAVVFGN 117 (547)
Q Consensus 85 GyGdi~p~t~-------~E~if~i~~mi~G~l~~a~iig~ 117 (547)
|+ +..+.+. .=.+..++.+++|.+.|..++-.
T Consensus 507 GF-sL~~dSM~~F~~~~~vllvm~~LIi~GntGFPVllrl 545 (800)
T TIGR00934 507 GL-TLTPESMVSFNKNSYLLLLMIWFIIIGNTGFPIFLRL 545 (800)
T ss_pred CC-CcCCCcchhhccCccHHHHHHHHHHHcccchHHHHHH
Confidence 98 4444332 11223344455555555444433
No 47
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=78.06 E-value=3 Score=31.85 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=24.6
Q ss_pred hhHHHhhhhccchhHhHHHhhHHHHHHHHHH
Q psy8545 413 SSVDRLDTQVTSLHHHVATLSQEVRNAIQAL 443 (547)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (547)
..|++|.++|..|...|.+|+.||..+-...
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999887654433
No 48
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=76.55 E-value=3.3 Score=32.11 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=33.6
Q ss_pred ccCCCcEEEccCCCCC-cEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 220 FCAPGEYLIHKGDHLS-SIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 220 ~y~~ge~I~~qGd~~~-~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
.++||+.+-..-.... .+++|++|++.+..++. ...+++||.+=
T Consensus 4 ~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~-~~~l~~Gd~~~ 48 (71)
T PF07883_consen 4 TLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDGE-RVELKPGDAIY 48 (71)
T ss_dssp EEETTEEEEEEEESSEEEEEEEEESEEEEEETTE-EEEEETTEEEE
T ss_pred EECCCCCCCCEECCCCCEEEEEEECCEEEEEccE-EeEccCCEEEE
Confidence 4677887655555555 89999999999996665 56789998774
No 49
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=75.83 E-value=1.3 Score=39.96 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhhhhhhc
Q psy8545 66 HRESYITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRRSLYQTKWRDLKEFLTL 145 (547)
Q Consensus 66 ~~~~Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~~~~~~~~~~k~~~l~~fm~~ 145 (547)
.......++++++.+++. +-++..|.+...+++.+++.+++.++.++.-+++++++..- +++..++.+++..+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~-----~~~~~i~sl~dL~~~ 114 (148)
T PF00060_consen 41 WRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP-----KYEPPIDSLEDLANS 114 (148)
T ss_dssp HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-----HHTSS-SSHHHHHTH
T ss_pred CcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CcCCCCCCHHHHHHC
Confidence 344566688887777765 33578899999999999999999999999999999887652 233335555555554
Q ss_pred c
Q psy8545 146 N 146 (547)
Q Consensus 146 ~ 146 (547)
.
T Consensus 115 ~ 115 (148)
T PF00060_consen 115 G 115 (148)
T ss_dssp S
T ss_pred C
Confidence 4
No 50
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=69.65 E-value=6.1 Score=31.78 Aligned_cols=42 Identities=17% Similarity=0.438 Sum_probs=31.1
Q ss_pred cCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 221 CAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 221 y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
..||..-..-.. +++.+|++|.|.+..++.....+++||.|=
T Consensus 14 ~~pg~~~~~~~~--~E~~~vleG~v~it~~~G~~~~~~aGD~~~ 55 (74)
T PF05899_consen 14 CTPGKFPWPYPE--DEFFYVLEGEVTITDEDGETVTFKAGDAFF 55 (74)
T ss_dssp EECEEEEEEESS--EEEEEEEEEEEEEEETTTEEEEEETTEEEE
T ss_pred ECCceeEeeCCC--CEEEEEEEeEEEEEECCCCEEEEcCCcEEE
Confidence 345554333322 788899999999998776668899999985
No 51
>PRK11530 hypothetical protein; Provisional
Probab=68.60 E-value=5.7 Score=37.27 Aligned_cols=49 Identities=33% Similarity=0.476 Sum_probs=34.2
Q ss_pred hhhccchhHhHHHhhHHHHHHHH---HHHHHhhcccccccCCCCCCCCCCCCCC
Q psy8545 419 DTQVTSLHHHVATLSQEVRNAIQ---ALQELATTSSNVASNRYPYPLPAHSNPN 469 (547)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (547)
+.|+..+||+|++|.+||...=+ +|++=+ ..|.+|.++.+..|+-.+|-
T Consensus 23 q~ev~ql~~~vs~LNqem~~Lt~qa~aleqQn--~LN~~S~~GvyLLP~A~tpa 74 (183)
T PRK11530 23 QSEVRQMHNSVSTLNQEMTQLTQQAVAIEQQN--RLNANSTSGVYLLPAAKTPA 74 (183)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcccccCceEEccCCCCcc
Confidence 35777888888888888875422 333222 34667789999999988874
No 52
>PRK00846 hypothetical protein; Provisional
Probab=66.76 E-value=12 Score=30.53 Aligned_cols=54 Identities=15% Similarity=0.194 Sum_probs=42.0
Q ss_pred cchhhHHHhhhhccchhHhHHHhhHHHHHHHHHHHHHhhcccccccCCCCCCCCCCC
Q psy8545 410 EKKSSVDRLDTQVTSLHHHVATLSQEVRNAIQALQELATTSSNVASNRYPYPLPAHS 466 (547)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (547)
....+|+.||..|....+.++.|...|+.+..-|+++-++.....+ .-..|+|+
T Consensus 24 fQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~~~~~~---dE~PPPHY 77 (77)
T PRK00846 24 FQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRSTLFADPA---DEPPPPHY 77 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC---CCCCcCCC
Confidence 3456799999999999999999999999999999999866544322 22356664
No 53
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=64.90 E-value=20 Score=32.09 Aligned_cols=47 Identities=15% Similarity=0.026 Sum_probs=32.0
Q ss_pred ccccCCCcEEEccCCCCCcEEEEEceeEEEE-EcCeEEEEcCCCCeec
Q psy8545 218 NNFCAPGEYLIHKGDHLSSIYYLCNGSMEVV-QNGMVVAILGKGDLVG 264 (547)
Q Consensus 218 ~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~-~~~~vl~~l~~Gd~FG 264 (547)
...++||..+-..-.....+++|++|++++. -++.....+++||.+-
T Consensus 39 ~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~~~~L~aGD~i~ 86 (125)
T PRK13290 39 ETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGEVHPIRPGTMYA 86 (125)
T ss_pred EEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCEEEEeCCCeEEE
Confidence 3456788655322111236999999999998 5434456899999986
No 54
>PRK04406 hypothetical protein; Provisional
Probab=63.45 E-value=15 Score=29.82 Aligned_cols=40 Identities=3% Similarity=0.300 Sum_probs=34.3
Q ss_pred cchhhHHHhhhhccchhHhHHHhhHHHHHHHHHHHHHhhc
Q psy8545 410 EKKSSVDRLDTQVTSLHHHVATLSQEVRNAIQALQELATT 449 (547)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (547)
.....|+.||..|..-++++..|...++.+.+-|.++-.+
T Consensus 22 fQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~~ 61 (75)
T PRK04406 22 FQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDSS 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3445699999999999999999999999999988887643
No 55
>PRK02793 phi X174 lysis protein; Provisional
Probab=59.01 E-value=21 Score=28.71 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=34.7
Q ss_pred cchhhHHHhhhhccchhHhHHHhhHHHHHHHHHHHHHhhc
Q psy8545 410 EKKSSVDRLDTQVTSLHHHVATLSQEVRNAIQALQELATT 449 (547)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (547)
.....|++|+..|..-++++..|...|+.+.+-|.++-.+
T Consensus 19 fQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 58 (72)
T PRK02793 19 FQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3445699999999999999999999999999999887644
No 56
>PLN03223 Polycystin cation channel protein; Provisional
Probab=58.97 E-value=90 Score=38.56 Aligned_cols=28 Identities=4% Similarity=0.159 Sum_probs=17.4
Q ss_pred HHHHHHHHhhhHHHHhhhhHHHHHHHHH
Q psy8545 99 FSICTMLIGALMHAVVFGNVTAIIQRMY 126 (547)
Q Consensus 99 f~i~~mi~G~l~~a~iig~i~~ii~~~~ 126 (547)
|..+++++.+++.-++++.|...++...
T Consensus 1399 FfSFILLV~FILLNMFIAII~DSFsEVK 1426 (1634)
T PLN03223 1399 FYSYNIFVFMILFNFLLAIICDAFGEVK 1426 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666666667777666666543
No 57
>PRK02119 hypothetical protein; Provisional
Probab=57.02 E-value=24 Score=28.52 Aligned_cols=39 Identities=8% Similarity=0.290 Sum_probs=34.0
Q ss_pred chhhHHHhhhhccchhHhHHHhhHHHHHHHHHHHHHhhc
Q psy8545 411 KKSSVDRLDTQVTSLHHHVATLSQEVRNAIQALQELATT 449 (547)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (547)
...+|+.||..|..-++++..|...++.+.+-|.++-.+
T Consensus 21 QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 21 QENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQPS 59 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 345699999999999999999999999999999887644
No 58
>PRK00295 hypothetical protein; Provisional
Probab=55.05 E-value=29 Score=27.60 Aligned_cols=37 Identities=11% Similarity=0.276 Sum_probs=33.0
Q ss_pred chhhHHHhhhhccchhHhHHHhhHHHHHHHHHHHHHh
Q psy8545 411 KKSSVDRLDTQVTSLHHHVATLSQEVRNAIQALQELA 447 (547)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (547)
...+|+.||..|..-++++..|...++.+.+-|.++-
T Consensus 17 qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 17 QDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456899999999999999999999999999998876
No 59
>KOG3088|consensus
Probab=52.35 E-value=1.2e+02 Score=30.99 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCchhh
Q psy8545 13 TLLMLSFTLVAHWLACLWFVIADYERNRYRQDWDLGWIH 51 (547)
Q Consensus 13 ~kL~~~~ll~~H~~ACiw~~i~~~~~~~~~~~~~~~Wl~ 51 (547)
-...++|++++|+.-|+.-.++-.. .+..+|+.
T Consensus 198 ~F~~FFF~y~~q~~~~v~qAvgf~g------~~~~G~i~ 230 (313)
T KOG3088|consen 198 NFGAFFFTYFFQIVFCVFQAVGFPG------WGLCGWIP 230 (313)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccCC------cchhhhhh
Confidence 3356678889999999999998322 23446766
No 60
>PRK15396 murein lipoprotein; Provisional
Probab=51.89 E-value=18 Score=29.67 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=26.9
Q ss_pred hhHHHhhhhccchhHhHHHhhHHHHHHHHHHHH
Q psy8545 413 SSVDRLDTQVTSLHHHVATLSQEVRNAIQALQE 445 (547)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (547)
.+++.|.++|..|..+|.+++.|+..+-.+.|.
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~ 57 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQA 57 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999888777665543
No 61
>PRK00736 hypothetical protein; Provisional
Probab=50.94 E-value=34 Score=27.18 Aligned_cols=39 Identities=10% Similarity=0.274 Sum_probs=33.5
Q ss_pred chhhHHHhhhhccchhHhHHHhhHHHHHHHHHHHHHhhc
Q psy8545 411 KKSSVDRLDTQVTSLHHHVATLSQEVRNAIQALQELATT 449 (547)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (547)
....|+.|+..|..-++++..|...|+.+..-|.++-.+
T Consensus 17 qe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~~ 55 (68)
T PRK00736 17 QEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEEQ 55 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345689999999999999999999999999988887643
No 62
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=50.84 E-value=13 Score=29.58 Aligned_cols=38 Identities=21% Similarity=0.403 Sum_probs=28.4
Q ss_pred hhhHHHhhhhccchhHhHHHhhHHHHHHHHHHHHHhhc
Q psy8545 412 KSSVDRLDTQVTSLHHHVATLSQEVRNAIQALQELATT 449 (547)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (547)
...|+.|+..|..-++++..|...++.+..-|+++..+
T Consensus 17 e~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 54 (69)
T PF04102_consen 17 EDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELEDP 54 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45689999999999999999999999999999998744
No 63
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=50.18 E-value=1.5e+02 Score=28.21 Aligned_cols=48 Identities=15% Similarity=0.301 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhh
Q psy8545 69 SYITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFG 116 (547)
Q Consensus 69 ~Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig 116 (547)
.|..=+||+++.-||..-.|+.+.+..=+-....-.+++.++.+.+++
T Consensus 132 ~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~ilA 179 (180)
T PF07077_consen 132 DYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVILA 179 (180)
T ss_pred CchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 488889999999999988999999988788888888888877777664
No 64
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=47.81 E-value=23 Score=29.55 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=26.9
Q ss_pred hhHHHhhhhccchhHhHHHhhHHHHHHHHHHH
Q psy8545 413 SSVDRLDTQVTSLHHHVATLSQEVRNAIQALQ 444 (547)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (547)
.+++.|.++|..|..+|.++++|+..+-.+.+
T Consensus 24 ~kvdqLss~V~~L~~kvdql~~dv~~a~aaa~ 55 (85)
T PRK09973 24 QKVNQLASNVQTLNAKIARLEQDMKALRPQIY 55 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999999999999877655543
No 65
>COG4709 Predicted membrane protein [Function unknown]
Probab=47.33 E-value=19 Score=34.40 Aligned_cols=55 Identities=16% Similarity=0.393 Sum_probs=41.6
Q ss_pred HHHHHhhhhhhccCCchHHHHhhhhhhhhhhcc--cCCcchhhhhccC--Ccccccccccc
Q psy8545 134 TKWRDLKEFLTLNQIPKELKQRMQDYFQTMWSL--SHGIDVHETLKEF--PEELRGDVSMH 190 (547)
Q Consensus 134 ~k~~~l~~fm~~~~ip~~L~~rv~~Y~~~~~~~--~~~~d~~~iL~~L--p~~Lr~~i~~~ 190 (547)
+-++++++|++ ++|++.++.++.||+-.+.. ..|.+|+|+.++| |.++-.|+...
T Consensus 5 efL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~ 63 (195)
T COG4709 5 EFLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSE 63 (195)
T ss_pred HHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHH
Confidence 45677888887 89999999999999866654 3578899999998 55555555433
No 66
>KOG4196|consensus
Probab=46.52 E-value=33 Score=30.74 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=32.7
Q ss_pred cchhhHH----HhhhhccchhHhHHHhhHHHHHHHHHHHHHhhc
Q psy8545 410 EKKSSVD----RLDTQVTSLHHHVATLSQEVRNAIQALQELATT 449 (547)
Q Consensus 410 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (547)
+.+..|| .|.+||..|++|+|.+..|+.+--.-++.+.++
T Consensus 74 ~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~ 117 (135)
T KOG4196|consen 74 QQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNS 117 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444 588999999999999999999988888888866
No 67
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.51 E-value=49 Score=26.64 Aligned_cols=52 Identities=13% Similarity=0.273 Sum_probs=42.0
Q ss_pred chhhHHHhhhhccchhHhHHHhhHHHHHHHHHHHHHhhcccccccCCCCC-CCCCCC
Q psy8545 411 KKSSVDRLDTQVTSLHHHVATLSQEVRNAIQALQELATTSSNVASNRYPY-PLPAHS 466 (547)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 466 (547)
...+|++|+..+......+++++.-||...+-|+.+-.+.... ++. ..|+|+
T Consensus 20 QE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~~~~~----~~~etpPPHY 72 (72)
T COG2900 20 QEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPSAIAS----PAEETPPPHY 72 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC----CcccCCCCCC
Confidence 4567999999999999999999999999999999998775443 333 566664
No 68
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=43.97 E-value=46 Score=29.57 Aligned_cols=48 Identities=29% Similarity=0.447 Sum_probs=34.7
Q ss_pred ccccccCCCcEE-EccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 216 IRNNFCAPGEYL-IHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 216 l~~~~y~~ge~I-~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
+....++||+-+ .+.-...+.+|+|++|...+..++..+ .+++||++=
T Consensus 38 ~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~~~-~v~~gd~~~ 86 (127)
T COG0662 38 IARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGEEV-EVKAGDSVY 86 (127)
T ss_pred EEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCEEE-EecCCCEEE
Confidence 455567777775 444444789999999999999876543 578888774
No 69
>PRK04325 hypothetical protein; Provisional
Probab=43.56 E-value=54 Score=26.53 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=34.3
Q ss_pred cchhhHHHhhhhccchhHhHHHhhHHHHHHHHHHHHHhhc
Q psy8545 410 EKKSSVDRLDTQVTSLHHHVATLSQEVRNAIQALQELATT 449 (547)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (547)
....+|+.|+..|..-+++++.|...++.+..-|.++..+
T Consensus 20 fQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~~~ 59 (74)
T PRK04325 20 FQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDANPD 59 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445699999999999999999999999999988887643
No 70
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=43.45 E-value=3.3e+02 Score=28.94 Aligned_cols=65 Identities=8% Similarity=0.143 Sum_probs=43.0
Q ss_pred CCCchhHHHHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHHH
Q psy8545 62 SEISHRESYITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMY 126 (547)
Q Consensus 62 ~~~s~~~~Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~~ 126 (547)
.+......|+.+|-|++..+.+++-++.......-..+++++.++..+++.+.|..++..++--+
T Consensus 93 ~~q~vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ 157 (371)
T PF10011_consen 93 VTQVVLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSN 157 (371)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 34445667999999999999888765542222222455666666667777788877777665433
No 71
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=43.16 E-value=32 Score=30.44 Aligned_cols=48 Identities=17% Similarity=0.086 Sum_probs=38.9
Q ss_pred cccccCCCcEEEccCCC-CCcEEEEEceeEEEEEcCeEEEEcCCCCeech
Q psy8545 217 RNNFCAPGEYLIHKGDH-LSSIYYLCNGSMEVVQNGMVVAILGKGDLVGC 265 (547)
Q Consensus 217 ~~~~y~~ge~I~~qGd~-~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG~ 265 (547)
....++||..+-.---+ .....+|++|.+++..+ .....+.+||++-.
T Consensus 46 ~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~-g~~~~l~~Gd~i~i 94 (131)
T COG1917 46 VLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE-GEKKELKAGDVIII 94 (131)
T ss_pred EEEEECCCcccccccCCCcceEEEEEecEEEEEec-CCceEecCCCEEEE
Confidence 45568889888777666 67899999999999987 55667899999973
No 72
>PF11622 DUF3251: Protein of unknown function (DUF3251); InterPro: IPR021658 This entry represents immunoglobulin-like domain found in a group of putative lipoprotein YajI. ; PDB: 2JWY_A.
Probab=40.94 E-value=7.5 Score=36.36 Aligned_cols=48 Identities=35% Similarity=0.513 Sum_probs=13.5
Q ss_pred hhccchhHhHHHhhHHHHHHHH---HHHHHhhcccccccCCCCCCCCCCCCCC
Q psy8545 420 TQVTSLHHHVATLSQEVRNAIQ---ALQELATTSSNVASNRYPYPLPAHSNPN 469 (547)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (547)
.++..||++|++|.++|....+ +|++-. ..|.+++++.+..|+-..|-
T Consensus 5 ~~~~qL~~~vs~lnq~l~~L~~~a~aleqqn--~Ln~~S~~gvyLlP~a~t~~ 55 (165)
T PF11622_consen 5 SQVPQLHQQVSQLNQQLQQLTQQAAALEQQN--ALNANSQSGVYLLPAANTPA 55 (165)
T ss_dssp -------S-------------HHHHHHHHHH--HHHHH-SSSEEE-TTT---E
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--HHhccCcCceEECcCCCCce
Confidence 4566667777777766655433 232222 14667788999888777664
No 73
>KOG4440|consensus
Probab=40.18 E-value=64 Score=36.40 Aligned_cols=95 Identities=15% Similarity=0.254 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCCCCCchhhhhHhhhhccCCCCchhHHHHHHHHHHHHHHhcccCCCccccCc
Q psy8545 15 LMLSFTLVAHWLACLWFVIADYERNRYRQDWDLGWIHTLAERLKVNVSEISHRESYITALYFTCSSLTSVGFGNVSANTS 94 (547)
Q Consensus 15 L~~~~ll~~H~~ACiw~~i~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~s~~~~Yi~SlYwai~TltTVGyGdi~p~t~ 94 (547)
|.+.+++-.|..|-+.|++..+..... . .+.+. -.++....-.-.|+||+-..+..-|.|.-.|.+-
T Consensus 572 LW~lv~~SVhvVal~lYlLDrfSPFgR---F---k~~ds-------~~~ee~alnlssAmWF~WGVLLNSGigEgtPRSf 638 (993)
T KOG4440|consen 572 LWLLVGLSVHVVALMLYLLDRFSPFGR---F---KVNDS-------EEEEEDALNLSSAMWFSWGVLLNSGIGEGTPRSF 638 (993)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccc---e---eeccC-------ccchhhhcchhhhHHHHhHhhhccccCCCCCcch
Confidence 445667788999999999887654210 0 00000 0112222234558898888888889999999998
Q ss_pred chhHHHHHHHHHhhhHHHHhhhhHHHHH
Q psy8545 95 AEKIFSICTMLIGALMHAVVFGNVTAII 122 (547)
Q Consensus 95 ~E~if~i~~mi~G~l~~a~iig~i~~ii 122 (547)
.-+++.+++.=+.+++.|-..++++..+
T Consensus 639 SARvLGmVWaGFaMIiVASYTANLAAFL 666 (993)
T KOG4440|consen 639 SARVLGMVWAGFAMIIVASYTANLAAFL 666 (993)
T ss_pred hHHHHHHHHhhhheeeehhhhhhhhhhe
Confidence 8899988888777777777677766654
No 74
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=35.57 E-value=76 Score=28.08 Aligned_cols=42 Identities=21% Similarity=0.440 Sum_probs=33.1
Q ss_pred cCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 221 CAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 221 y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
+.||..=..-++ ++++-|++|.+++..++.....+++||.|=
T Consensus 52 ~TpG~~r~~y~~--~E~chil~G~v~~T~d~Ge~v~~~aGD~~~ 93 (116)
T COG3450 52 CTPGKFRVTYDE--DEFCHILEGRVEVTPDGGEPVEVRAGDSFV 93 (116)
T ss_pred ecCccceEEccc--ceEEEEEeeEEEEECCCCeEEEEcCCCEEE
Confidence 456665444444 788899999999999888888899999884
No 75
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=34.14 E-value=89 Score=33.42 Aligned_cols=43 Identities=23% Similarity=0.469 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhcccCCCc--cccCcchhHHHHHHHHHhhhH
Q psy8545 68 ESYITALYFTCSSLTSVGFGNV--SANTSAEKIFSICTMLIGALM 110 (547)
Q Consensus 68 ~~Yi~SlYwai~TltTVGyGdi--~p~t~~E~if~i~~mi~G~l~ 110 (547)
.....++++++++++|.||... ..-+..-+++.+++|++|...
T Consensus 230 ~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~ 274 (390)
T TIGR00933 230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCS 274 (390)
T ss_pred HHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCC
Confidence 4567788899999999999644 223344567888888888755
No 76
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=34.02 E-value=35 Score=26.14 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=21.7
Q ss_pred hhhHHHhhhhccchhHhHHHhhHHHHHH
Q psy8545 412 KSSVDRLDTQVTSLHHHVATLSQEVRNA 439 (547)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (547)
...|..|+.+|..|.+||..|..|+..+
T Consensus 9 s~dVq~L~~kvdqLs~dv~~lr~~v~~a 36 (56)
T PF04728_consen 9 SSDVQTLNSKVDQLSSDVNALRADVQAA 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888887776544
No 77
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=33.64 E-value=45 Score=31.52 Aligned_cols=55 Identities=18% Similarity=0.507 Sum_probs=41.9
Q ss_pred HHHHHHhhhhhhccCCchHHHHhhhhhhhhhhcc--cCCcchhhhhccC--Cccccccccc
Q psy8545 133 QTKWRDLKEFLTLNQIPKELKQRMQDYFQTMWSL--SHGIDVHETLKEF--PEELRGDVSM 189 (547)
Q Consensus 133 ~~k~~~l~~fm~~~~ip~~L~~rv~~Y~~~~~~~--~~~~d~~~iL~~L--p~~Lr~~i~~ 189 (547)
++=+++++.+++ ++|++-++++.+||+-.+.. .+|.+++++.++| |.++-+++..
T Consensus 4 ~efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~ 62 (181)
T PF08006_consen 4 NEFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILA 62 (181)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 345677888887 59999999999999877764 4577899999998 5555555543
No 78
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=31.48 E-value=87 Score=31.12 Aligned_cols=81 Identities=19% Similarity=0.163 Sum_probs=50.5
Q ss_pred ccccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeechhhhhhhccCCCCCCCCCCCCCCCCCcccee
Q psy8545 216 IRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSS 295 (547)
Q Consensus 216 l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~~~~~~~~~~~~ 295 (547)
++...+++|+.+-..-...+.+.+++.|++.+...+.....++ .-.+.+...|...=|++ .-+.
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~g~~f~~iG------~R~SvFe~~p~~~vYvp----------~g~~ 94 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSAHGSTFGEIG------TRMSVFERKPPDSVYVP----------AGSA 94 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEeeccchHhhcc------cccccccCCCCCeEEec----------CCce
Confidence 3455678999887777777788899999999986554433222 12233333331110111 1167
Q ss_pred EEEEEeeeeEEEEEeHH
Q psy8545 296 CDVKALTYCDLKSVNVV 312 (547)
Q Consensus 296 ~tv~Alt~c~ll~I~~~ 312 (547)
+++.|.++|+|-....-
T Consensus 95 ~~vtA~t~~~vAvC~AP 111 (270)
T COG3718 95 FSVTATTDLEVAVCSAP 111 (270)
T ss_pred EEEEeecceEEEEEeCC
Confidence 89999999998777643
No 79
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=29.77 E-value=77 Score=28.65 Aligned_cols=48 Identities=21% Similarity=0.204 Sum_probs=33.3
Q ss_pred cccccCCCcEEEccCC-CCCcEEEEEceeEEEEEcC-----eEEEEcCCCCeec
Q psy8545 217 RNNFCAPGEYLIHKGD-HLSSIYYLCNGSMEVVQNG-----MVVAILGKGDLVG 264 (547)
Q Consensus 217 ~~~~y~~ge~I~~qGd-~~~~lYfI~~G~V~v~~~~-----~vl~~l~~Gd~FG 264 (547)
....+.||..+-..-- ....+++|++|...+...+ .....+.+||.|=
T Consensus 33 ~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ 86 (146)
T smart00835 33 ARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFV 86 (146)
T ss_pred EEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEE
Confidence 3445677776544432 2568999999999987432 2467799999885
No 80
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=28.82 E-value=66 Score=27.53 Aligned_cols=35 Identities=20% Similarity=0.418 Sum_probs=28.8
Q ss_pred HHHhhhhccchhHhHHHhhHHHHHHHHHHHHHhhc
Q psy8545 415 VDRLDTQVTSLHHHVATLSQEVRNAIQALQELATT 449 (547)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (547)
.+.|-.++..+..+++.+..+++.+-.-|++++..
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~ 103 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEEELNELLLS 103 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56777788888888888888888888888888854
No 81
>KOG1341|consensus
Probab=28.66 E-value=2.9e+02 Score=31.49 Aligned_cols=92 Identities=17% Similarity=0.265 Sum_probs=49.9
Q ss_pred cchHHH-HHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCchhhhhHhhhhccCCCCchhHHHHHHHHHHHHHHhcc
Q psy8545 6 QYSALI-LTLLMLSFTLVAHWLACLWFVIADYERNRYRQDWDLGWIHTLAERLKVNVSEISHRESYITALYFTCSSLTSV 84 (547)
Q Consensus 6 ~y~~l~-l~kL~~~~ll~~H~~ACiw~~i~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~s~~~~Yi~SlYwai~TltTV 84 (547)
.|-|++ |+-+++.+.++.|++|-+-+++-........+- +. ..-...=+++++-++++....
T Consensus 456 EyRAlk~Lcsil~vY~l~~nIvafV~llv~i~t~k~~~eV-----v~------------~~gisp~ww~~FTs~S~F~nl 518 (854)
T KOG1341|consen 456 EYRALKCLCSILVVYFLGWNIVAFVTLLVFIYTAKTSREV-----VR------------SKGISPGWWAFFTSMSAFNNL 518 (854)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhh-----cc------------cCCCCcchhhhhhHHHHHhcc
Confidence 355665 666777888899999987666654433222210 00 000111234777788888888
Q ss_pred cCCCccccC-------cchhHHHHHHHHHhhhHHHHhh
Q psy8545 85 GFGNVSANT-------SAEKIFSICTMLIGALMHAVVF 115 (547)
Q Consensus 85 GyGdi~p~t-------~~E~if~i~~mi~G~l~~a~ii 115 (547)
||. ..|.+ ..=.++.+..+|+|--.|-.++
T Consensus 519 Gfs-lt~~smvsF~kai~plil~~~fIi~GNTgFPi~L 555 (854)
T KOG1341|consen 519 GFS-LTPDSMVSFNKAIFPLILMIPFIIIGNTGFPIFL 555 (854)
T ss_pred Ccc-cCcccccccccchhHHHHHHHHHHHcCCCchHHH
Confidence 874 22222 2233555666666654444443
No 82
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=27.08 E-value=2.1e+02 Score=27.34 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=28.2
Q ss_pred hhccHHHHHHHHhhccccc--cCCCcEEEccCCCCC
Q psy8545 202 EAATQGCLKLLSLHIRNNF--CAPGEYLIHKGDHLS 235 (547)
Q Consensus 202 ~~ls~~~l~~L~~~l~~~~--y~~ge~I~~qGd~~~ 235 (547)
+..++....+......+.. +.+|+.|+++|+..+
T Consensus 172 ~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 172 EEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred HHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 3567777888888888888 999999999998654
No 83
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=26.84 E-value=25 Score=32.31 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8545 8 SALILTLLMLSFTLVAHWLACLWFVIAD 35 (547)
Q Consensus 8 ~~l~l~kL~~~~ll~~H~~ACiw~~i~~ 35 (547)
+..+.+.+.+++++++--+||+|+|=..
T Consensus 9 sv~i~igi~Ll~lLl~cgiGcvwhwkhr 36 (158)
T PF11770_consen 9 SVAISIGISLLLLLLLCGIGCVWHWKHR 36 (158)
T ss_pred hHHHHHHHHHHHHHHHHhcceEEEeecc
Confidence 4455556666667777788999997653
No 84
>PHA02909 hypothetical protein; Provisional
Probab=26.46 E-value=1.4e+02 Score=22.76 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8545 12 LTLLMLSFTLVAHWLACLWFVIADY 36 (547)
Q Consensus 12 l~kL~~~~ll~~H~~ACiw~~i~~~ 36 (547)
++.+++.++-+..++||-|.+++..
T Consensus 38 filfviiflsmftilacsyvyiaii 62 (72)
T PHA02909 38 FILFVIIFLSMFTILACSYVYIAII 62 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666788899999988764
No 85
>PRK10750 potassium transporter; Provisional
Probab=26.00 E-value=2.9e+02 Score=30.66 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=51.5
Q ss_pred chhHHHHHHHHHHHHHHhcccCCCccccC--cchhHHHHHHHHHhhhHHHHhhhh-HHHHHHHHHhhHHHHHHHHH--Hh
Q psy8545 65 SHRESYITALYFTCSSLTSVGFGNVSANT--SAEKIFSICTMLIGALMHAVVFGN-VTAIIQRMYSRRSLYQTKWR--DL 139 (547)
Q Consensus 65 s~~~~Yi~SlYwai~TltTVGyGdi~p~t--~~E~if~i~~mi~G~l~~a~iig~-i~~ii~~~~~~~~~~~~k~~--~l 139 (547)
+..+....+++-+++.++|.||....-.+ ..-+.+.++.|++|...-+--=|. +..+.--......+.++... .+
T Consensus 300 ~~~~~l~~s~Fq~vS~~tTtGF~t~d~~~w~~~~~~ll~~lMfIGG~~GSTaGGIKv~R~~vl~~~~~~~l~~~~~P~~V 379 (483)
T PRK10750 300 SALMTLNQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIGGCAGSTGGGLKVIRILLLFKQGNRELKRLVHPNAV 379 (483)
T ss_pred CHHHHHHHHHHeeeecccCCCCCCCChhhccHHHHHHHHHHHHHcCCcccCcccHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 44566777888888888999996442222 233566778888887554332222 11111111111222221111 00
Q ss_pred -hhhhhccCCchHHHHhhhhhhh
Q psy8545 140 -KEFLTLNQIPKELKQRMQDYFQ 161 (547)
Q Consensus 140 -~~fm~~~~ip~~L~~rv~~Y~~ 161 (547)
.--+..+.+|++..+++.-|+-
T Consensus 380 ~~v~~~gr~i~~~~v~~v~~~~~ 402 (483)
T PRK10750 380 YSIKLGNRALPERILEAVWGFFS 402 (483)
T ss_pred eeeeECCEECCHHHHHHHHHHHH
Confidence 0123567788888777776654
No 86
>KOG1054|consensus
Probab=25.92 E-value=1.1e+02 Score=34.40 Aligned_cols=53 Identities=13% Similarity=0.280 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHH
Q psy8545 69 SYITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAII 122 (547)
Q Consensus 69 ~Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii 122 (547)
.-.-||||++...+--|. ||.|.+...+|...++-++-.++.+-..++++..+
T Consensus 595 gifNsLWFsLgAFMQQG~-DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFL 647 (897)
T KOG1054|consen 595 GIFNSLWFSLGAFMQQGC-DISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFL 647 (897)
T ss_pred hhhHHHHHHHHHHHhcCC-CCCccccccceeccchhhhhhhhhhhhhhHHHHHH
Confidence 345699999999988885 99999999999888887776666555555655544
No 87
>PHA01757 hypothetical protein
Probab=25.30 E-value=2.1e+02 Score=23.57 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=33.0
Q ss_pred CcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhh
Q psy8545 93 TSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRRSLYQTKWRDLK 140 (547)
Q Consensus 93 t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~~~~~~~~~~k~~~l~ 140 (547)
+..|..+..++...|++.-.+++|.+.-+... ..+...|.+-++++.
T Consensus 4 ~l~e~al~gf~a~~g~l~~~fii~e~~hlyne-k~~nenf~~AvD~m~ 50 (98)
T PHA01757 4 TLLEGALYGFFAVTGALSASFIIGEIVHLYNE-KQRNENFAKAIDQMS 50 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HhhhHhHHHHHHHHH
Confidence 45677777888899999999999998876644 344555665555443
No 88
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=25.12 E-value=87 Score=25.38 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=25.1
Q ss_pred hhhHHHhhhhccchhHhHHHhhHHHHHHHHHH
Q psy8545 412 KSSVDRLDTQVTSLHHHVATLSQEVRNAIQAL 443 (547)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (547)
+..++++..+|.+|.-.|++|+.+|..+.-..
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~ 55 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLENDVNAMRSDV 55 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55688899999999999999998886654433
No 89
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=23.35 E-value=1.6e+02 Score=28.35 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=32.9
Q ss_pred cccccCCCcEE---------EccCCCCCcEEEEEceeEEEEEcC----eEEEEcCCCCeec
Q psy8545 217 RNNFCAPGEYL---------IHKGDHLSSIYYLCNGSMEVVQNG----MVVAILGKGDLVG 264 (547)
Q Consensus 217 ~~~~y~~ge~I---------~~qGd~~~~lYfI~~G~V~v~~~~----~vl~~l~~Gd~FG 264 (547)
-...++||... +++.....++|+|++|+..+.-++ .....+++||++=
T Consensus 71 g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~ 131 (191)
T PRK04190 71 GTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVY 131 (191)
T ss_pred EEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEE
Confidence 34456677743 444444569999999999887532 2456789999885
No 90
>PLN02678 seryl-tRNA synthetase
Probab=23.02 E-value=1.4e+02 Score=32.79 Aligned_cols=60 Identities=20% Similarity=0.207 Sum_probs=41.9
Q ss_pred HHhhhhccchhHhHHHhhHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCC---CcccccccccCCCCCc
Q psy8545 416 DRLDTQVTSLHHHVATLSQEVRNAIQALQELATTSSNVASNRYPYPLPAHSNPNLPHNTQC---PQQRALLQRSSSHPPE 492 (547)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 492 (547)
++|-.++..|..++.+|..+++.+-+.|++++.. +||++++-+. +.....+.|---.||+
T Consensus 74 ~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~-----------------iPNi~~~~VP~G~de~~n~~vr~~g~~~~ 136 (448)
T PLN02678 74 TELIAETKELKKEITEKEAEVQEAKAALDAKLKT-----------------IGNLVHDSVPVSNDEANNAVVRTWGEKRQ 136 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------CCCCCCccCCCCCCcCCCEEEEEEcCCCC
Confidence 4555567778888888888888888888888855 7888887652 2224455666666654
No 91
>PF11278 DUF3079: Protein of unknown function (DUF3079); InterPro: IPR021430 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=21.64 E-value=51 Score=24.38 Aligned_cols=28 Identities=32% Similarity=0.778 Sum_probs=20.1
Q ss_pred CcccccC-----CCCccccccccccccCCCchhhHH
Q psy8545 491 PEMFCWE-----SMDQERYAHCVSQSTQTDYPIDMF 521 (547)
Q Consensus 491 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 521 (547)
||-+||- |.+.-+ +=|-|.-|-+|+++|
T Consensus 12 PERiCWGCD~YC~a~~l~---CGNGs~RtqHP~El~ 44 (52)
T PF11278_consen 12 PERICWGCDRYCPADSLA---CGNGSSRTQHPAELL 44 (52)
T ss_pred ccceeeccccccChhhhc---ccCCcccccCchhhc
Confidence 7999997 333323 667788888888865
No 92
>KOG3088|consensus
Probab=21.51 E-value=9.1e+02 Score=24.93 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8545 16 MLSFTLVAHWLACLWFVIA 34 (547)
Q Consensus 16 ~~~~ll~~H~~ACiw~~i~ 34 (547)
+..+.|+..++||+-+++.
T Consensus 140 ~~~~tL~~Niia~la~~i~ 158 (313)
T KOG3088|consen 140 GLVLTLLWNIIACLAWWIK 158 (313)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3455667777888766643
No 93
>KOG1053|consensus
Probab=21.42 E-value=5.5e+02 Score=30.71 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=40.1
Q ss_pred HHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhh
Q psy8545 74 LYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRRSLYQTKWRDLK 140 (547)
Q Consensus 74 lYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~~~~~~~~~~k~~~l~ 140 (547)
+.||+.---+|-- -.|..+..+++..++.+++++|.|...++++.+... ++|.+.+.-|.
T Consensus 616 llwaLvFnnsVpv--~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIq-----E~~~d~vSGls 675 (1258)
T KOG1053|consen 616 LLWALVFNNSVPV--ENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQ-----EEYYDTVSGLS 675 (1258)
T ss_pred HHHHHHhCCCcCC--CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhhhccccC
Confidence 4566554434331 245667789999999999999999888888876544 34444444443
No 94
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=21.41 E-value=6.7e+02 Score=26.67 Aligned_cols=24 Identities=13% Similarity=0.172 Sum_probs=20.1
Q ss_pred HHHhhhhhhccCCchHHHHhhhhh
Q psy8545 136 WRDLKEFLTLNQIPKELKQRMQDY 159 (547)
Q Consensus 136 ~~~l~~fm~~~~ip~~L~~rv~~Y 159 (547)
.+++++-+++..-+++++.|+++-
T Consensus 226 kqEVKdE~Ke~EGdP~iK~r~Rq~ 249 (358)
T PRK13109 226 KQEIKDEHKQAEGDPSVKARLRSL 249 (358)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHH
Confidence 468888889999999999988754
No 95
>PRK09108 type III secretion system protein HrcU; Validated
Probab=21.24 E-value=6.8e+02 Score=26.55 Aligned_cols=24 Identities=8% Similarity=-0.026 Sum_probs=19.9
Q ss_pred HHHhhhhhhccCCchHHHHhhhhh
Q psy8545 136 WRDLKEFLTLNQIPKELKQRMQDY 159 (547)
Q Consensus 136 ~~~l~~fm~~~~ip~~L~~rv~~Y 159 (547)
.+++++-+|+..-+++++.|+++-
T Consensus 219 kqEvK~E~K~~EGdP~iK~rrRq~ 242 (353)
T PRK09108 219 KDEVKREHKESEGDPHIKGERKRL 242 (353)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHH
Confidence 467888889999999999988754
No 96
>PF12041 DELLA: Transcriptional regulator DELLA protein N terminal; InterPro: IPR021914 Gibberellins are plant hormones which have great impact on growth signalling. DELLA proteins are transcriptional regulators of growth related proteins which are downregulated when gibberellins bind to their receptor GID1. GID1 forms a complex with DELLA proteins and signals them towards 26S proteasome. The N-terminal of DELLA proteins contains conserved DELLA and VHYNP motifs which are important for GID1 binding and proteolysis of the DELLA proteins [].; PDB: 2ZSH_B 2ZSI_B.
Probab=21.14 E-value=52 Score=26.48 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHhhccccc
Q psy8545 433 SQEVRNAIQALQELATTSSNV 453 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~ 453 (547)
|-||..++|-||+|-..-.++
T Consensus 13 sSdmadVAQkLEqLE~vmg~~ 33 (73)
T PF12041_consen 13 SSDMADVAQKLEQLEMVMGNA 33 (73)
T ss_dssp GGGHHHHHHHHHHHHHHHTT-
T ss_pred chHHHHHHHHHHHHHHHHccc
Confidence 346788888888877664443
No 97
>PRK11171 hypothetical protein; Provisional
Probab=21.00 E-value=1.9e+02 Score=29.26 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=37.8
Q ss_pred hccccccCCCcEEEc-cCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 215 HIRNNFCAPGEYLIH-KGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 215 ~l~~~~y~~ge~I~~-qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
.+....++||..+-. ......+.++|++|+..+..+++ ...+.+||++-
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~~-~~~l~~GD~i~ 234 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLNND-WVEVEAGDFIW 234 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEECCE-EEEeCCCCEEE
Confidence 345567899988866 35666799999999999986654 45689999875
No 98
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=20.93 E-value=1.7e+02 Score=27.97 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=25.7
Q ss_pred CCCCcEEEEEceeEEEEE--cCe-EEEEcCCCCeec
Q psy8545 232 DHLSSIYYLCNGSMEVVQ--NGM-VVAILGKGDLVG 264 (547)
Q Consensus 232 d~~~~lYfI~~G~V~v~~--~~~-vl~~l~~Gd~FG 264 (547)
+..+.+|++++|.+.+.- +++ ....+++||+|=
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fl 87 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFL 87 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEE
Confidence 557899999999998875 332 456789999885
No 99
>KOG2199|consensus
Probab=20.90 E-value=2.7e+02 Score=29.96 Aligned_cols=40 Identities=15% Similarity=0.274 Sum_probs=33.8
Q ss_pred chhhHHHhhhhccchhHhHHHhhHHHHHHHHHHHHHhhcc
Q psy8545 411 KKSSVDRLDTQVTSLHHHVATLSQEVRNAIQALQELATTS 450 (547)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (547)
.+..|+|.--.+..-|.|.++|...+++|+.+-..|+.-.
T Consensus 329 mgPlid~~Le~idrk~~eL~~Ln~~l~~Al~lY~kLm~~~ 368 (462)
T KOG2199|consen 329 MGPLIDRKLEKIDRKHEELSQLNVKLLDALRLYNKLMNEA 368 (462)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3556777777888889999999999999999999888664
No 100
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=20.86 E-value=1.3e+02 Score=28.10 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=26.6
Q ss_pred EccCCCCCcEEEEEceeEEEEE-c-Ce-EEEEcCCCCeec
Q psy8545 228 IHKGDHLSSIYYLCNGSMEVVQ-N-GM-VVAILGKGDLVG 264 (547)
Q Consensus 228 ~~qGd~~~~lYfI~~G~V~v~~-~-~~-vl~~l~~Gd~FG 264 (547)
++..+ .+.+|++++|.+.+.- + ++ ....+++||+|=
T Consensus 43 ~H~~~-tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fl 81 (159)
T TIGR03037 43 FHDDP-GEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFL 81 (159)
T ss_pred cccCC-CceEEEEEcceEEEEEEcCCcEEEEEECCCCEEE
Confidence 45533 7899999999999853 2 32 356789999985
No 101
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=20.65 E-value=98 Score=21.02 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=19.0
Q ss_pred HHHHhhhhhhccCCch-----HHHHhhhhhh
Q psy8545 135 KWRDLKEFLTLNQIPK-----ELKQRMQDYF 160 (547)
Q Consensus 135 k~~~l~~fm~~~~ip~-----~L~~rv~~Y~ 160 (547)
++.+++++++.+++|. +|..|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 4567888898888875 6777777764
No 102
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=20.07 E-value=71 Score=27.68 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=32.7
Q ss_pred CCchHHHHhhhhhhhhhhc----------ccCCcchhhhhccCCcccccccccc
Q psy8545 147 QIPKELKQRMQDYFQTMWS----------LSHGIDVHETLKEFPEELRGDVSMH 190 (547)
Q Consensus 147 ~ip~~L~~rv~~Y~~~~~~----------~~~~~d~~~iL~~Lp~~Lr~~i~~~ 190 (547)
.+|.+++..|..++...-. .....|...+|..||++||.+|...
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 6899999999988775321 1223456679999999999998754
No 103
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=20.05 E-value=1.6e+02 Score=27.48 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=28.9
Q ss_pred EEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 227 LIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 227 I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
..+--...+++++|++|+..+.-++. ...+++||+.|
T Consensus 57 ~~H~Hs~edEfv~ILeGE~~l~~d~~-e~~lrpGD~~g 93 (161)
T COG3837 57 LRHWHSAEDEFVYILEGEGTLREDGG-ETRLRPGDSAG 93 (161)
T ss_pred cccccccCceEEEEEcCceEEEECCe-eEEecCCceee
Confidence 34444667899999999999886664 45689999998
Done!