Query psy8545
Match_columns 547
No_of_seqs 430 out of 2655
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 21:36:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8545.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8545hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ukn_A Novel protein similar t 100.0 8E-35 2.7E-39 281.2 13.7 210 119-346 1-210 (212)
2 2ptm_A Hyperpolarization-activ 100.0 3.6E-31 1.2E-35 252.8 15.6 193 124-337 2-196 (198)
3 3bpz_A Potassium/sodium hyperp 100.0 4.6E-31 1.6E-35 253.1 15.1 196 123-339 2-198 (202)
4 3beh_A MLL3241 protein; transm 100.0 2.2E-29 7.5E-34 262.8 11.6 224 11-338 128-351 (355)
5 4f8a_A Potassium voltage-gated 99.8 1.7E-20 5.8E-25 171.3 11.9 142 173-332 6-148 (160)
6 3ocp_A PRKG1 protein; serine/t 99.8 1.7E-18 5.6E-23 155.0 10.9 131 178-328 7-138 (139)
7 3mdp_A Cyclic nucleotide-bindi 99.8 8.8E-18 3E-22 149.9 14.8 126 195-340 8-141 (142)
8 3gyd_A CNMP-BD protein, cyclic 99.7 3.8E-17 1.3E-21 154.5 15.9 153 172-344 13-175 (187)
9 2pqq_A Putative transcriptiona 99.7 3.9E-17 1.3E-21 146.7 14.3 129 194-342 6-139 (149)
10 1vp6_A CNBD, cyclic-nucleotide 99.7 2.1E-17 7.2E-22 147.0 11.1 121 195-337 13-133 (138)
11 3pna_A CAMP-dependent protein 99.7 1.1E-16 3.9E-21 145.8 11.2 114 195-328 40-153 (154)
12 4ev0_A Transcription regulator 99.7 4.2E-16 1.4E-20 149.2 15.7 127 196-342 2-133 (216)
13 2z69_A DNR protein; beta barre 99.7 2.5E-16 8.5E-21 142.3 12.9 124 195-337 14-142 (154)
14 3dn7_A Cyclic nucleotide bindi 99.7 4.2E-16 1.5E-20 147.0 13.5 129 197-345 11-145 (194)
15 3idb_B CAMP-dependent protein 99.7 1.3E-16 4.6E-21 146.2 8.4 116 194-329 39-158 (161)
16 3e97_A Transcriptional regulat 99.7 6.9E-16 2.4E-20 149.6 13.7 126 194-339 7-137 (231)
17 2gau_A Transcriptional regulat 99.7 1.2E-15 4.2E-20 148.0 15.5 128 196-343 13-145 (232)
18 3fx3_A Cyclic nucleotide-bindi 99.6 1.2E-15 4.2E-20 148.4 14.9 128 195-342 13-145 (237)
19 3shr_A CGMP-dependent protein 99.6 5.5E-16 1.9E-20 156.5 12.0 138 173-330 18-156 (299)
20 3dv8_A Transcriptional regulat 99.6 2.5E-15 8.5E-20 144.3 15.7 127 195-341 5-138 (220)
21 3d0s_A Transcriptional regulat 99.6 4.9E-16 1.7E-20 150.3 10.8 128 195-342 8-140 (227)
22 1zyb_A Transcription regulator 99.6 4.3E-15 1.5E-19 144.6 15.6 129 195-342 20-155 (232)
23 4ava_A Lysine acetyltransferas 99.6 2.2E-15 7.5E-20 154.6 13.8 123 195-338 15-141 (333)
24 3iwz_A CAP-like, catabolite ac 99.6 4.4E-15 1.5E-19 143.5 15.1 130 195-343 13-152 (230)
25 3dkw_A DNR protein; CRP-FNR, H 99.6 1.7E-15 5.9E-20 146.1 10.1 129 193-340 9-142 (227)
26 2qcs_B CAMP-dependent protein 99.6 5.5E-15 1.9E-19 148.3 13.7 122 193-334 39-160 (291)
27 3of1_A CAMP-dependent protein 99.6 1.4E-15 4.7E-20 148.3 8.9 120 194-333 8-127 (246)
28 1wgp_A Probable cyclic nucleot 99.6 8.1E-16 2.8E-20 136.7 6.1 118 195-326 8-134 (137)
29 3shr_A CGMP-dependent protein 99.6 3.2E-15 1.1E-19 150.9 11.1 126 196-341 160-291 (299)
30 3ryp_A Catabolite gene activat 99.6 1E-14 3.4E-19 139.0 13.5 125 199-342 2-131 (210)
31 2d93_A RAP guanine nucleotide 99.6 6.8E-16 2.3E-20 137.1 4.1 124 180-323 2-128 (134)
32 2oz6_A Virulence factor regula 99.6 2.5E-14 8.5E-19 135.9 14.6 122 204-341 1-127 (207)
33 1o5l_A Transcriptional regulat 99.6 1.4E-14 5E-19 139.0 11.5 127 198-343 4-135 (213)
34 4din_B CAMP-dependent protein 99.5 7.3E-15 2.5E-19 154.5 10.1 121 195-335 132-252 (381)
35 3kcc_A Catabolite gene activat 99.5 2.6E-14 9E-19 141.8 13.5 123 201-342 54-181 (260)
36 2fmy_A COOA, carbon monoxide o 99.5 2E-14 6.8E-19 138.4 11.0 120 195-341 6-129 (220)
37 3of1_A CAMP-dependent protein 99.5 2E-14 6.8E-19 140.0 11.1 112 196-327 128-240 (246)
38 4h33_A LMO2059 protein; bilaye 99.5 1.4E-14 4.7E-19 130.8 7.0 92 70-161 44-135 (137)
39 3vou_A ION transport 2 domain 99.5 9.4E-14 3.2E-18 126.9 12.6 86 70-155 53-148 (148)
40 1ft9_A Carbon monoxide oxidati 99.5 4.3E-14 1.5E-18 136.3 9.4 120 196-342 3-126 (222)
41 1o7f_A CAMP-dependent RAP1 gua 99.5 5E-14 1.7E-18 151.2 10.6 122 191-332 335-459 (469)
42 3tnp_B CAMP-dependent protein 99.5 6.8E-14 2.3E-18 148.9 11.2 128 197-344 271-409 (416)
43 2qcs_B CAMP-dependent protein 99.5 1.2E-13 4.2E-18 138.4 12.3 117 197-333 161-283 (291)
44 3tnp_B CAMP-dependent protein 99.5 1.2E-13 4E-18 147.0 11.5 116 193-328 145-264 (416)
45 4din_B CAMP-dependent protein 99.4 1.2E-13 4.1E-18 145.2 9.3 120 197-336 252-377 (381)
46 1o7f_A CAMP-dependent RAP1 gua 99.4 4.2E-14 1.4E-18 151.8 5.3 130 179-329 27-164 (469)
47 3la7_A Global nitrogen regulat 99.4 1.1E-12 3.8E-17 128.6 14.4 117 206-340 30-154 (243)
48 3e6c_C CPRK, cyclic nucleotide 99.4 6.1E-13 2.1E-17 130.7 11.2 121 200-343 16-141 (250)
49 3eff_K Voltage-gated potassium 99.4 1.1E-12 3.8E-17 118.4 11.6 90 12-126 8-97 (139)
50 2bgc_A PRFA; bacterial infecti 99.4 2.3E-12 8E-17 125.7 14.1 120 203-341 3-130 (238)
51 3cf6_E RAP guanine nucleotide 99.4 1.2E-12 4E-17 147.7 10.1 133 174-326 13-148 (694)
52 2ih3_C Voltage-gated potassium 99.3 4.1E-12 1.4E-16 112.2 10.6 58 70-127 62-119 (122)
53 2a9h_A Voltage-gated potassium 99.3 4E-12 1.4E-16 116.8 10.7 61 69-129 84-144 (155)
54 4f7z_A RAP guanine nucleotide 99.3 3E-12 1E-16 150.4 12.3 117 190-327 39-162 (999)
55 4f7z_A RAP guanine nucleotide 99.3 6.1E-12 2.1E-16 147.7 12.2 124 176-319 320-446 (999)
56 1orq_C Potassium channel; volt 99.3 1.7E-11 5.7E-16 119.2 10.6 88 12-124 133-220 (223)
57 3b02_A Transcriptional regulat 99.2 2.8E-11 9.6E-16 114.2 10.7 97 219-342 2-103 (195)
58 2k1e_A Water soluble analogue 99.2 3.9E-12 1.3E-16 109.0 4.1 90 12-126 8-97 (103)
59 3ouf_A Potassium channel prote 99.2 9.4E-11 3.2E-15 99.2 10.9 55 70-124 33-87 (97)
60 3ldc_A Calcium-gated potassium 99.2 1.1E-10 3.8E-15 95.7 10.5 53 70-122 29-81 (82)
61 2q67_A Potassium channel prote 99.2 7.5E-11 2.6E-15 102.8 9.5 57 70-126 50-106 (114)
62 2zcw_A TTHA1359, transcription 99.1 1.1E-10 3.8E-15 110.6 8.8 101 213-341 2-109 (202)
63 2r9r_B Paddle chimera voltage 99.0 9.4E-10 3.2E-14 119.9 10.6 91 12-127 343-433 (514)
64 1xl4_A Inward rectifier potass 98.9 1.7E-09 6E-14 109.7 9.6 86 14-124 52-137 (301)
65 3pjs_K KCSA, voltage-gated pot 98.9 5.7E-11 2E-15 110.5 -1.8 61 69-129 67-127 (166)
66 1p7b_A Integral membrane chann 98.9 1.1E-09 3.8E-14 112.5 4.9 56 70-125 97-152 (333)
67 2qks_A KIR3.1-prokaryotic KIR 98.8 1.6E-08 5.5E-13 103.4 10.6 57 69-125 78-134 (321)
68 4gx0_A TRKA domain protein; me 98.7 3.5E-08 1.2E-12 108.7 11.9 85 11-122 19-105 (565)
69 3um7_A Potassium channel subfa 98.7 2.9E-08 1E-12 100.6 9.0 57 69-125 115-171 (309)
70 3sya_A G protein-activated inw 98.7 4.7E-08 1.6E-12 100.3 9.0 100 14-125 48-149 (340)
71 3spc_A Inward-rectifier K+ cha 98.6 7.6E-08 2.6E-12 98.9 9.7 100 14-124 50-151 (343)
72 3um7_A Potassium channel subfa 98.6 5.5E-08 1.9E-12 98.6 7.9 58 70-127 225-288 (309)
73 3ukm_A Potassium channel subfa 98.5 1.8E-07 6.2E-12 93.5 8.7 55 70-124 202-263 (280)
74 3ukm_A Potassium channel subfa 98.4 3.7E-07 1.3E-11 91.2 7.1 56 69-124 93-148 (280)
75 1lnq_A MTHK channels, potassiu 98.3 1E-07 3.4E-12 98.0 0.1 56 70-125 46-101 (336)
76 3rvy_A ION transport protein; 97.5 0.00016 5.4E-09 72.4 7.2 60 67-126 178-243 (285)
77 4dxw_A Navrh, ION transport pr 75.0 10 0.00035 35.6 8.8 55 67-121 163-222 (229)
78 3kg2_A Glutamate receptor 2; I 74.2 2 6.9E-05 48.3 4.1 56 68-124 562-617 (823)
79 3fjs_A Uncharacterized protein 68.6 17 0.00058 30.1 7.8 47 217-264 39-85 (114)
80 1jcd_A Major outer membrane li 67.7 4.8 0.00016 29.3 3.4 28 413-440 4-31 (52)
81 3rns_A Cupin 2 conserved barre 67.0 13 0.00044 35.1 7.5 69 217-311 40-108 (227)
82 1o5u_A Novel thermotoga mariti 60.7 10 0.00034 31.2 4.7 45 218-264 35-79 (101)
83 2ozj_A Cupin 2, conserved barr 59.0 25 0.00084 28.6 7.0 43 221-264 45-87 (114)
84 2fqp_A Hypothetical protein BP 57.5 7.2 0.00025 31.2 3.2 46 219-264 23-70 (97)
85 3es4_A Uncharacterized protein 56.8 6.8 0.00023 33.4 3.0 45 219-264 47-91 (116)
86 3lwc_A Uncharacterized protein 56.6 15 0.00051 31.0 5.2 45 218-264 44-88 (119)
87 4e2g_A Cupin 2 conserved barre 55.5 15 0.00051 30.5 5.1 48 216-264 43-90 (126)
88 1yhf_A Hypothetical protein SP 54.4 18 0.0006 29.5 5.2 47 217-264 43-89 (115)
89 3bcw_A Uncharacterized protein 52.8 6.5 0.00022 33.7 2.3 44 220-264 55-98 (123)
90 2gu9_A Tetracenomycin polyketi 52.0 20 0.0007 28.7 5.2 46 218-264 25-73 (113)
91 2pfw_A Cupin 2, conserved barr 51.7 21 0.00072 29.0 5.3 47 217-264 37-83 (116)
92 3h8u_A Uncharacterized conserv 49.7 11 0.00038 31.3 3.3 47 217-264 42-90 (125)
93 2pyt_A Ethanolamine utilizatio 47.7 17 0.00058 31.4 4.2 43 219-264 62-104 (133)
94 1v70_A Probable antibiotics sy 46.1 31 0.0011 26.9 5.4 46 218-264 32-78 (105)
95 3ibm_A Cupin 2, conserved barr 43.5 25 0.00087 31.3 4.8 46 218-264 60-105 (167)
96 2b8m_A Hypothetical protein MJ 42.5 13 0.00043 30.7 2.4 32 233-264 46-77 (117)
97 4b29_A Dimethylsulfoniopropion 42.3 19 0.00064 34.1 3.8 44 221-264 139-182 (217)
98 1jcd_A Major outer membrane li 41.7 14 0.00049 26.8 2.2 29 411-439 9-37 (52)
99 3pjz_A Potassium uptake protei 41.6 54 0.0018 34.9 7.7 96 66-161 303-404 (494)
100 2f4p_A Hypothetical protein TM 40.5 22 0.00074 30.9 3.8 47 218-264 52-98 (147)
101 2i45_A Hypothetical protein; n 39.8 37 0.0013 27.2 4.9 31 234-264 48-78 (107)
102 3d0j_A Uncharacterized protein 39.5 63 0.0021 28.3 6.4 60 228-312 44-110 (140)
103 2qjv_A Uncharacterized IOLB-li 38.9 68 0.0023 31.3 7.3 77 215-311 30-110 (270)
104 3es1_A Cupin 2, conserved barr 38.4 15 0.0005 33.5 2.3 46 218-263 83-128 (172)
105 2vpv_A Protein MIF2, MIF2P; nu 38.2 24 0.00083 31.9 3.7 31 233-264 109-139 (166)
106 1y9q_A Transcriptional regulat 37.2 44 0.0015 30.0 5.5 46 218-264 108-155 (192)
107 3efg_A Protein SLYX homolog; x 36.9 14 0.00049 29.0 1.8 39 411-449 26-64 (78)
108 3jzv_A Uncharacterized protein 35.6 27 0.00091 31.3 3.6 45 219-264 58-102 (166)
109 3i7d_A Sugar phosphate isomera 35.5 28 0.00095 30.9 3.7 46 218-264 47-94 (163)
110 2bnm_A Epoxidase; oxidoreducta 34.0 28 0.00097 31.4 3.6 45 220-264 123-173 (198)
111 3kgz_A Cupin 2 conserved barre 34.0 29 0.00099 30.7 3.5 44 220-264 50-93 (156)
112 1sfn_A Conserved hypothetical 33.8 37 0.0013 32.3 4.5 48 216-264 167-215 (246)
113 2lme_A Adhesin YADA; trimeric 33.0 16 0.00055 30.4 1.5 37 410-446 6-42 (105)
114 3l2h_A Putative sugar phosphat 32.8 47 0.0016 29.0 4.8 46 218-264 50-97 (162)
115 1dgw_A Canavalin; duplicated s 32.6 30 0.001 31.2 3.5 49 216-264 43-94 (178)
116 3rns_A Cupin 2 conserved barre 32.5 47 0.0016 31.0 5.0 48 216-264 155-202 (227)
117 2q30_A Uncharacterized protein 32.3 40 0.0014 26.8 3.9 47 218-264 37-85 (110)
118 4i4a_A Similar to unknown prot 31.2 47 0.0016 27.4 4.3 44 220-264 40-83 (128)
119 3cew_A Uncharacterized cupin p 30.8 35 0.0012 28.2 3.4 45 219-264 31-77 (125)
120 1vj2_A Novel manganese-contain 30.7 33 0.0011 28.7 3.2 45 219-264 53-97 (126)
121 3h7j_A Bacilysin biosynthesis 29.8 52 0.0018 31.0 4.8 45 219-264 150-195 (243)
122 1o4t_A Putative oxalate decarb 29.8 48 0.0016 28.0 4.2 46 218-264 61-107 (133)
123 2xp1_A SPT6; transcription, IW 29.4 60 0.002 29.6 4.9 41 193-239 9-49 (178)
124 3d82_A Cupin 2, conserved barr 29.2 1.1E+02 0.0037 23.7 6.0 30 234-264 50-79 (102)
125 2o8q_A Hypothetical protein; c 29.1 51 0.0017 27.5 4.2 31 234-264 64-94 (134)
126 1lr5_A Auxin binding protein 1 28.9 37 0.0013 29.7 3.4 47 218-264 45-99 (163)
127 4axo_A EUTQ, ethanolamine util 28.8 45 0.0015 29.5 3.9 31 233-264 83-113 (151)
128 3bu7_A Gentisate 1,2-dioxygena 28.3 28 0.00095 36.0 2.7 48 217-264 126-173 (394)
129 2opk_A Hypothetical protein; p 28.3 27 0.00094 28.7 2.2 32 233-264 52-84 (112)
130 3h7j_A Bacilysin biosynthesis 27.7 61 0.0021 30.6 4.9 46 217-263 37-82 (243)
131 3ra3_B P2F; coiled coil domain 27.4 24 0.00082 21.3 1.2 23 415-437 2-24 (28)
132 3myx_A Uncharacterized protein 27.0 49 0.0017 31.6 4.0 31 234-264 186-216 (238)
133 1zvf_A 3-hydroxyanthranilate 3 25.9 45 0.0015 30.4 3.3 33 232-264 52-91 (176)
134 3nw4_A Gentisate 1,2-dioxygena 25.1 1.1E+02 0.0037 31.3 6.4 74 221-320 286-359 (368)
135 2d40_A Z3393, putative gentisa 25.1 1.3E+02 0.0043 30.3 7.0 73 220-318 274-346 (354)
136 1yfu_A 3-hydroxyanthranilate-3 24.6 70 0.0024 29.1 4.3 32 233-264 54-88 (174)
137 2vqa_A SLL1358 protein, MNCA; 23.8 87 0.003 31.2 5.4 49 216-264 236-289 (361)
138 1y3t_A Hypothetical protein YX 23.4 89 0.0031 30.5 5.4 46 218-264 50-96 (337)
139 2oa2_A BH2720 protein; 1017534 22.5 60 0.0021 27.9 3.4 45 220-264 49-99 (148)
140 1ses_A Seryl-tRNA synthetase; 22.3 1.1E+02 0.0038 31.7 6.0 61 415-492 66-128 (421)
141 1ci6_A Transcription factor AT 22.0 65 0.0022 24.0 3.0 36 410-445 27-62 (63)
142 1sef_A Conserved hypothetical 22.0 78 0.0027 30.4 4.5 46 218-264 186-232 (274)
143 1sfn_A Conserved hypothetical 21.8 84 0.0029 29.7 4.6 44 218-264 54-97 (246)
144 1sq4_A GLXB, glyoxylate-induce 21.6 79 0.0027 30.6 4.4 49 215-264 192-241 (278)
145 2d40_A Z3393, putative gentisa 21.0 56 0.0019 33.0 3.3 47 217-264 103-150 (354)
146 3nw4_A Gentisate 1,2-dioxygena 20.8 62 0.0021 33.0 3.6 47 217-264 106-153 (368)
147 3bu7_A Gentisate 1,2-dioxygena 20.5 55 0.0019 33.8 3.1 47 217-264 297-343 (394)
148 1i1r_B Viral IL-6; cytokine/re 20.5 3.3E+02 0.011 24.8 8.0 52 398-449 68-119 (181)
No 1
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=100.00 E-value=8e-35 Score=281.20 Aligned_cols=210 Identities=59% Similarity=1.054 Sum_probs=185.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhhhhccCCchHHHHhhhhhhhhhhcccCCcchhhhhccCCcccccccccccccccccc
Q psy8545 119 TAIIQRMYSRRSLYQTKWRDLKEFLTLNQIPKELKQRMQDYFQTMWSLSHGIDVHETLKEFPEELRGDVSMHLHREILQL 198 (547)
Q Consensus 119 ~~ii~~~~~~~~~~~~k~~~l~~fm~~~~ip~~L~~rv~~Y~~~~~~~~~~~d~~~iL~~Lp~~Lr~~i~~~l~~~ll~i 198 (547)
++|++++++++.+|++++..+++||+.+++|++|+.||++||+|.|+.+++.+++++++.||++|+.++..+++..+.++
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~~~ 80 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELLQL 80 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGGGS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred chhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeechhhhhhhccCCCCC
Q psy8545 199 PIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVGCDISMWLSEKNGGS 278 (547)
Q Consensus 199 plF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG~eisl~~~~p~~~s 278 (547)
|+|++++++++..|+..++...|+|||+|+++||.++++|||.+|.|+++.++.++..+++|++|| +.+++.+.+
T Consensus 81 ~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fG-e~~~~~~~~---- 155 (212)
T 3ukn_A 81 PLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDNTVLAILGKGDLIG-SDSLTKEQV---- 155 (212)
T ss_dssp GGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESSSCEEEEECTTCEEE-CSCCSSSSC----
T ss_pred HHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEECCeEEEEecCCCCcC-cHHhccCCC----
Confidence 999999999999999999999999999999999999999999999999999889999999999999 777765430
Q ss_pred CCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy8545 279 AVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIREGYEA 346 (547)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr~~~e~ 346 (547)
.+++++|+|+++|+++.|++++|.++++.+|++...+.+.+.+++..++|+..+.
T Consensus 156 -------------~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~lr~~~~~ 210 (212)
T 3ukn_A 156 -------------IKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNLREGSGA 210 (212)
T ss_dssp -------------CBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEEECBC----
T ss_pred -------------CCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcccccccccc
Confidence 1378899999999999999999999999999999999999999999888876654
No 2
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=3.6e-31 Score=252.79 Aligned_cols=193 Identities=22% Similarity=0.486 Sum_probs=178.0
Q ss_pred HHHhhHHHHHHHHHHhhhhhhccCCchHHHHhhhhhhhhhhcccCCcchhhhhccCCcccccccccccccccc-ccchhh
Q psy8545 124 RMYSRRSLYQTKWRDLKEFLTLNQIPKELKQRMQDYFQTMWSLSHGIDVHETLKEFPEELRGDVSMHLHREIL-QLPIFE 202 (547)
Q Consensus 124 ~~~~~~~~~~~k~~~l~~fm~~~~ip~~L~~rv~~Y~~~~~~~~~~~d~~~iL~~Lp~~Lr~~i~~~l~~~ll-~iplF~ 202 (547)
++++++.+|++++..+++||+.+++|.+|+.||++||+|.|+ .++.+++++++.||++||.++..+++..++ ++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 467889999999999999999999999999999999999998 478899999999999999999999998866 699999
Q ss_pred hccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE-cCeEEEEcCCCCeechhhhhhhccCCCCCCCC
Q psy8545 203 AATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ-NGMVVAILGKGDLVGCDISMWLSEKNGGSAVG 281 (547)
Q Consensus 203 ~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~-~~~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~ 281 (547)
+++++++..|+..++...|+||++|+++||.++.+|||.+|.|+++. +|.++..+++|++|| +.+++.+.+
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~~~~~l~~G~~fG-e~~~~~~~~------- 152 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFG-EICLLTRER------- 152 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTSCEEEEECTTCEES-CHHHHHSSC-------
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecCCeEEEEecCCCEec-hHHHcCCCc-------
Confidence 99999999999999999999999999999999999999999999996 566899999999999 888887655
Q ss_pred CCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q psy8545 282 PGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLT 337 (547)
Q Consensus 282 ~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~ 337 (547)
+.++++|.++|+++.|++++|.++++.+|++...+.+.+.+|+.
T Consensus 153 ------------~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~ 196 (198)
T 2ptm_A 153 ------------RVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRRLT 196 (198)
T ss_dssp ------------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCC-
T ss_pred ------------cceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHh
Confidence 77899999999999999999999999999999999887766543
No 3
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=4.6e-31 Score=253.07 Aligned_cols=196 Identities=24% Similarity=0.490 Sum_probs=178.9
Q ss_pred HHHHhhHHHHHHHHHHhhhhhhccCCchHHHHhhhhhhhhhhcccCCcchhhhhccCCcccccccccccccccc-ccchh
Q psy8545 123 QRMYSRRSLYQTKWRDLKEFLTLNQIPKELKQRMQDYFQTMWSLSHGIDVHETLKEFPEELRGDVSMHLHREIL-QLPIF 201 (547)
Q Consensus 123 ~~~~~~~~~~~~k~~~l~~fm~~~~ip~~L~~rv~~Y~~~~~~~~~~~d~~~iL~~Lp~~Lr~~i~~~l~~~ll-~iplF 201 (547)
+++++++.+|++++..+++||+.++||++|+.||++||+|.|+. ++.+++++++.||+.|+.++..+++..++ ++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 46788999999999999999999999999999999999999984 78899999999999999999999988765 69999
Q ss_pred hhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeechhhhhhhccCCCCCCCC
Q psy8545 202 EAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVGCDISMWLSEKNGGSAVG 281 (547)
Q Consensus 202 ~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~ 281 (547)
.+++++++..|+..++...|+||++|+++||.++.+|||.+|.|+++.++.....+++|++|| +.+++.+.+
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g~~~~l~~G~~fG-e~~~~~~~~------- 152 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFG-EICLLTRGR------- 152 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTTSCCEEEETTCEEC-HHHHHHCSB-------
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEECCCeEEEEcCCCEec-cHHHhcCCC-------
Confidence 999999999999999999999999999999999999999999999997554445789999999 788887655
Q ss_pred CCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q psy8545 282 PGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYN 339 (547)
Q Consensus 282 ~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~ 339 (547)
+.++|+|.++|+++.|++++|.++++.+|++...+.+.+.+++...
T Consensus 153 ------------~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~~~ 198 (202)
T 3bpz_A 153 ------------RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDRI 198 (202)
T ss_dssp ------------CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHHHC
T ss_pred ------------cccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999999999999888887643
No 4
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.96 E-value=2.2e-29 Score=262.82 Aligned_cols=224 Identities=18% Similarity=0.257 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCchhhhhHhhhhccCCCCchhHHHHHHHHHHHHHHhcccCCCcc
Q psy8545 11 ILTLLMLSFTLVAHWLACLWFVIADYERNRYRQDWDLGWIHTLAERLKVNVSEISHRESYITALYFTCSSLTSVGFGNVS 90 (547)
Q Consensus 11 ~l~kL~~~~ll~~H~~ACiw~~i~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~s~~~~Yi~SlYwai~TltTVGyGdi~ 90 (547)
.+..+++.+++++|++||++|++..... .+.+..|..|+||++.|||||||||+.
T Consensus 128 ~l~~~~~~~~~~~~~~a~~~~~~e~~~~-------------------------~~~f~~~~~s~y~~~~t~ttvGygd~~ 182 (355)
T 3beh_A 128 NLIGVTTLFGVVLFAVALAAYVIERDIQ-------------------------PEKFGSIPQAMWWAVVTLSTTGYGDTI 182 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTC-------------------------HHHHSSHHHHHHHHHHHHTTCCCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCC-------------------------CcccccHHHHHHHHHhheeecCCCCCC
Confidence 3556677778899999999999865321 012334889999999999999999999
Q ss_pred ccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCchHHHHhhhhhhhhhhcccCCc
Q psy8545 91 ANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRRSLYQTKWRDLKEFLTLNQIPKELKQRMQDYFQTMWSLSHGI 170 (547)
Q Consensus 91 p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~~~~~~~~~~k~~~l~~fm~~~~ip~~L~~rv~~Y~~~~~~~~~~~ 170 (547)
|.|..++++++++|++|++++++++|.+++.+.+...++ ++.+
T Consensus 183 p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~----------------------------~~~~--------- 225 (355)
T 3beh_A 183 PQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRRG----------------------------DFVR--------- 225 (355)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHH---------
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------hhcc---------
Confidence 999999999999999999999999999987765421100 0100
Q ss_pred chhhhhccCCccccccccccccccccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEc
Q psy8545 171 DVHETLKEFPEELRGDVSMHLHREILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQN 250 (547)
Q Consensus 171 d~~~iL~~Lp~~Lr~~i~~~l~~~ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~ 250 (547)
....+.++|+|+++++++++.+..+++.+.|+|||.|+++||.++++|||.+|.|+++..
T Consensus 226 --------------------~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~ 285 (355)
T 3beh_A 226 --------------------NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP 285 (355)
T ss_dssp --------------------HHC---------------------------------------------------------
T ss_pred --------------------cchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEEC
Confidence 012244689999999999999999999999999999999999999999999999999976
Q ss_pred CeEEEEcCCCCeechhhhhhhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHH
Q psy8545 251 GMVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAH 330 (547)
Q Consensus 251 ~~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~ 330 (547)
+ ...+++|++|| |.+++.+.| +.++++|.++|+++.|++++|.++++++|++...+.+
T Consensus 286 ~--~~~l~~G~~fG-e~~~l~~~~-------------------~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~ 343 (355)
T 3beh_A 286 N--PVELGPGAFFG-EMALISGEP-------------------RSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRK 343 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred C--eeEECCCCEEe-ehHHhCCCC-------------------cceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHH
Confidence 5 46899999999 778876654 7789999999999999999999999999999999998
Q ss_pred HHHHHHHH
Q psy8545 331 DIQHDLTY 338 (547)
Q Consensus 331 ~l~~~L~~ 338 (547)
.+.+|+..
T Consensus 344 ~l~~rl~~ 351 (355)
T 3beh_A 344 TALERRGA 351 (355)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 88877653
No 5
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.83 E-value=1.7e-20 Score=171.27 Aligned_cols=142 Identities=36% Similarity=0.765 Sum_probs=122.1
Q ss_pred hhhhccCCcccccccccccccccc-ccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEcC
Q psy8545 173 HETLKEFPEELRGDVSMHLHREIL-QLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNG 251 (547)
Q Consensus 173 ~~iL~~Lp~~Lr~~i~~~l~~~ll-~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~ 251 (547)
+++++.||+.||.++..+++..++ ++|+|++++++++..++..++.+.|++|++|+++|+.++++|||.+|.|+++.++
T Consensus 6 ~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~ 85 (160)
T 4f8a_A 6 EKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQDD 85 (160)
T ss_dssp ---------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEETT
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEECC
Confidence 568999999999999999988765 6999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCeechhhhhhhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHH
Q psy8545 252 MVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHD 331 (547)
Q Consensus 252 ~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~ 331 (547)
.++..+++|++|| +.+++.+.+ .++.++++|.++|+++.|++++|.++++++|++...+.+.
T Consensus 86 ~~~~~~~~G~~fG-~~~~~~~~~-----------------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~ 147 (160)
T 4f8a_A 86 EVVAILGKGDVFG-DVFWKEATL-----------------AQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRN 147 (160)
T ss_dssp EEEEEEETTCEEE-CCTTTCSSC-----------------CBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHH
T ss_pred EEEEEecCCCEeC-cHHHhcCcc-----------------cceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 777765410 1377899999999999999999999999999999988765
Q ss_pred H
Q psy8545 332 I 332 (547)
Q Consensus 332 l 332 (547)
+
T Consensus 148 l 148 (160)
T 4f8a_A 148 L 148 (160)
T ss_dssp C
T ss_pred H
Confidence 5
No 6
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.76 E-value=1.7e-18 Score=154.96 Aligned_cols=131 Identities=15% Similarity=0.229 Sum_probs=112.8
Q ss_pred cCCcccccccccccccccc-ccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEE
Q psy8545 178 EFPEELRGDVSMHLHREIL-QLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAI 256 (547)
Q Consensus 178 ~Lp~~Lr~~i~~~l~~~ll-~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~ 256 (547)
++|..++.+...+....++ ++|+|.+++++.+..++..++.+.|++|++|+++|+.++++|||++|.|++..++.++..
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~g~~~~~ 86 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLCT 86 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEETTEEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEECCEEEEE
Confidence 6788888877766665544 699999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeechhhhhhhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHH
Q psy8545 257 LGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEF 328 (547)
Q Consensus 257 l~~Gd~FG~eisl~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~ 328 (547)
+++|++|| +.+++.+.+ +.++++|+++|+++.|++++|.++++++|.+++++
T Consensus 87 ~~~G~~fG-e~~~l~~~~-------------------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~~ 138 (139)
T 3ocp_A 87 MGPGKVFG-ELAILYNCT-------------------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTE 138 (139)
T ss_dssp ECTTCEES-CHHHHHCCC-------------------CSSEEEESSCEEEEEEEHHHHHHHHTC--------
T ss_pred eCCCCEec-cHHHHCCCC-------------------cceEEEECcceEEEEEcHHHHHHHHhhChHhhhhc
Confidence 99999999 888887655 67799999999999999999999999999987653
No 7
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.76 E-value=8.8e-18 Score=149.85 Aligned_cols=126 Identities=14% Similarity=0.179 Sum_probs=112.4
Q ss_pred ccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE---c--CeE---EEEcCCCCeechh
Q psy8545 195 ILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---N--GMV---VAILGKGDLVGCD 266 (547)
Q Consensus 195 ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~--~~v---l~~l~~Gd~FG~e 266 (547)
+.++|+|++++++.+..++..++.+.|++|++|+++|+.++++|||++|.|+++. + ..+ +..+++|++|| +
T Consensus 8 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG-~ 86 (142)
T 3mdp_A 8 LRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFG-V 86 (142)
T ss_dssp GGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEEC-G
T ss_pred HhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEec-h
Confidence 4579999999999999999999999999999999999999999999999999984 2 235 88999999999 8
Q ss_pred hhhhhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Q psy8545 267 ISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNI 340 (547)
Q Consensus 267 isl~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~l 340 (547)
.+++.+.+ +.++++|.++|+++.|++++|.++++.+|++...+.+.+.+++..++
T Consensus 87 ~~~~~~~~-------------------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~rl 141 (142)
T 3mdp_A 87 SSLIKPYH-------------------YTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLARL 141 (142)
T ss_dssp GGSSTTCB-------------------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCCC-------------------ceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHhc
Confidence 88876544 67799999999999999999999999999999999998888877554
No 8
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.73 E-value=3.8e-17 Score=154.51 Aligned_cols=153 Identities=16% Similarity=0.206 Sum_probs=123.9
Q ss_pred hhhhhccCCcccccc----cccccc-ccccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEE
Q psy8545 172 VHETLKEFPEELRGD----VSMHLH-REILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSME 246 (547)
Q Consensus 172 ~~~iL~~Lp~~Lr~~----i~~~l~-~~ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~ 246 (547)
++.+.+.+++++..- ...... ..+.++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 345556666665532 222222 234579999999999999999999999999999999999999999999999999
Q ss_pred EEEc---C--eEEEEcCCCCeechhhhhhhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhC
Q psy8545 247 VVQN---G--MVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLY 321 (547)
Q Consensus 247 v~~~---~--~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~ 321 (547)
++.. + .++..+++|++|| +.+++.+.+ +.++++|+++|+++.|++++|.++++.+
T Consensus 93 v~~~~~~g~~~~~~~~~~G~~fG-e~~~l~~~~-------------------~~~~v~A~~~~~v~~i~~~~~~~l~~~~ 152 (187)
T 3gyd_A 93 VIKDIPNKGIQTIAKVGAGAIIG-EMSMIDGMP-------------------RSASCVASLPTDFAVLSRDALYQLLANM 152 (187)
T ss_dssp EEEEETTTEEEEEEEEETTCEES-HHHHHHCCC-------------------CSSEEEEEEEEEEEEEEHHHHHHHHHHC
T ss_pred EEEECCCCCeEEEEEccCCCeee-eHHHhCCCC-------------------eeEEEEECCCeEEEEEcHHHHHHHHHHC
Confidence 9862 2 5788999999999 888876654 6779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q psy8545 322 PEYQQEFAHDIQHDLTYNIREGY 344 (547)
Q Consensus 322 P~~~~~~~~~l~~~L~~~lr~~~ 344 (547)
|++...+.+.+.+.+..+++...
T Consensus 153 p~~~~~l~~~l~~~l~~rl~~~~ 175 (187)
T 3gyd_A 153 PKLGNKVLIRLLQLLTARFRESY 175 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988555555554444433
No 9
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.73 E-value=3.9e-17 Score=146.66 Aligned_cols=129 Identities=21% Similarity=0.335 Sum_probs=115.3
Q ss_pred cccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE---cC--eEEEEcCCCCeechhhh
Q psy8545 194 EILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---NG--MVVAILGKGDLVGCDIS 268 (547)
Q Consensus 194 ~ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~~--~vl~~l~~Gd~FG~eis 268 (547)
.+.++|+|.+++++.+..++..++.+.|++|++|+++|++++++|||.+|.|+++. ++ .++..+++|++|| +.+
T Consensus 6 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G-~~~ 84 (149)
T 2pqq_A 6 VLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIG-ELS 84 (149)
T ss_dssp GGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEES-GGG
T ss_pred HhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEec-hHH
Confidence 34579999999999999999999999999999999999999999999999999985 23 4789999999999 778
Q ss_pred hhhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhh
Q psy8545 269 MWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIRE 342 (547)
Q Consensus 269 l~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr~ 342 (547)
++.+.+ +.++++|.++|+++.|++++|.++++.+|++...+.+.+.+++....+.
T Consensus 85 ~~~~~~-------------------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~ 139 (149)
T 2pqq_A 85 LFDPGP-------------------RTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVARRLRKTNDA 139 (149)
T ss_dssp GTSCEE-------------------CSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHHHHHHHHTT
T ss_pred hcCCCC-------------------cceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 776544 6779999999999999999999999999999999999888887755443
No 10
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.72 E-value=2.1e-17 Score=147.01 Aligned_cols=121 Identities=19% Similarity=0.311 Sum_probs=110.7
Q ss_pred ccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeechhhhhhhccC
Q psy8545 195 ILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVGCDISMWLSEK 274 (547)
Q Consensus 195 ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG~eisl~~~~p 274 (547)
+.++|+|.+++++.+..++..++.+.|++|++|+++|+.++++|||.+|.|+++..+ ...+++|++|| +.+++.+.+
T Consensus 13 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~~~~~G~~~G-~~~~~~~~~ 89 (138)
T 1vp6_A 13 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--PVELGPGAFFG-EMALISGEP 89 (138)
T ss_dssp HTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS--CEEECTTCEEC-HHHHHHCCC
T ss_pred HHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC--cceECCCCEee-ehHhccCCC
Confidence 457999999999999999999999999999999999999999999999999999765 35789999999 788887655
Q ss_pred CCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q psy8545 275 NGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLT 337 (547)
Q Consensus 275 ~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~ 337 (547)
+.++++|.++|+++.|++++|.++++.+|++...+.+.+.+|+.
T Consensus 90 -------------------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~~ 133 (138)
T 1vp6_A 90 -------------------RSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRG 133 (138)
T ss_dssp -------------------CSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHCC
T ss_pred -------------------ceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhhc
Confidence 56799999999999999999999999999999999988877764
No 11
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.68 E-value=1.1e-16 Score=145.79 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=104.7
Q ss_pred ccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeechhhhhhhccC
Q psy8545 195 ILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVGCDISMWLSEK 274 (547)
Q Consensus 195 ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG~eisl~~~~p 274 (547)
+.++|+|.+++++.+..++..++.+.|++|++|+++|+.++++|||++|.|+++.++..+..+++|++|| +.+++.+.+
T Consensus 40 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~~~~~~~G~~fG-e~~~~~~~~ 118 (154)
T 3pna_A 40 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFG-ELALIYGTP 118 (154)
T ss_dssp HHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEETTEEEEEECTTCEEC-CHHHHHCCC
T ss_pred HHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEECCEEEEEecCCCEee-ehHhhcCCC
Confidence 4469999999999999999999999999999999999999999999999999999999999999999999 888887655
Q ss_pred CCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHH
Q psy8545 275 NGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEF 328 (547)
Q Consensus 275 ~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~ 328 (547)
+.++++|+++|+++.|++++|.++++++|.+++.+
T Consensus 119 -------------------~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~~ 153 (154)
T 3pna_A 119 -------------------RAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKM 153 (154)
T ss_dssp -------------------CSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC---
T ss_pred -------------------cceEEEECcceEEEEEeHHHHHHHHHhChHHHhhc
Confidence 67799999999999999999999999999887654
No 12
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.68 E-value=4.2e-16 Score=149.24 Aligned_cols=127 Identities=19% Similarity=0.312 Sum_probs=113.6
Q ss_pred cccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE---cC--eEEEEcCCCCeechhhhhh
Q psy8545 196 LQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---NG--MVVAILGKGDLVGCDISMW 270 (547)
Q Consensus 196 l~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~~--~vl~~l~~Gd~FG~eisl~ 270 (547)
.++|+|.+++++++..+...++.+.|++|++|+++|++++++|||.+|.|+++. +| .++..+++|++|| +.+++
T Consensus 2 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G-~~~~~ 80 (216)
T 4ev0_A 2 KGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFG-EMSLL 80 (216)
T ss_dssp --CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEEC-HHHHH
T ss_pred CCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEe-ehhhc
Confidence 468999999999999999999999999999999999999999999999999985 33 3789999999999 78888
Q ss_pred hccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhh
Q psy8545 271 LSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIRE 342 (547)
Q Consensus 271 ~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr~ 342 (547)
.+.+ +.++++|+++|+++.|++++|.++++.+|++...+.+.+.+++....+.
T Consensus 81 ~~~~-------------------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~ 133 (216)
T 4ev0_A 81 DEGE-------------------RSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRLREADLE 133 (216)
T ss_dssp HCCB-------------------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-------------------cceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHH
Confidence 7655 6679999999999999999999999999999999999888887655433
No 13
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.68 E-value=2.5e-16 Score=142.34 Aligned_cols=124 Identities=14% Similarity=0.240 Sum_probs=110.1
Q ss_pred ccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE---cC--eEEEEcCCCCeechhhhh
Q psy8545 195 ILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---NG--MVVAILGKGDLVGCDISM 269 (547)
Q Consensus 195 ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~~--~vl~~l~~Gd~FG~eisl 269 (547)
+.++++|..++++.+..++..++.+.|++|++|+++|+.++++|||++|.|+++. ++ .++..+++|++|| +.++
T Consensus 14 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G-~~~~ 92 (154)
T 2z69_A 14 LQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFA-EAMM 92 (154)
T ss_dssp HTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEES-GGGG
T ss_pred hhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeec-cHhh
Confidence 4569999999999999999999999999999999999999999999999999984 22 4688999999999 7877
Q ss_pred hhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q psy8545 270 WLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLT 337 (547)
Q Consensus 270 ~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~ 337 (547)
+.+.+ ++.++++|.++|+++.|++++|.++++.+|++...+.+.+.+++.
T Consensus 93 ~~~~~------------------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~rl~ 142 (154)
T 2z69_A 93 FMDTP------------------NYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLH 142 (154)
T ss_dssp GSSCS------------------BCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ccCCC------------------CCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence 75432 156799999999999999999999999999999999988877765
No 14
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.67 E-value=4.2e-16 Score=147.01 Aligned_cols=129 Identities=13% Similarity=0.159 Sum_probs=114.1
Q ss_pred ccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE---cC--eEEEEcCCCCeechhh-hhh
Q psy8545 197 QLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---NG--MVVAILGKGDLVGCDI-SMW 270 (547)
Q Consensus 197 ~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~~--~vl~~l~~Gd~FG~ei-sl~ 270 (547)
+++.|.+++++++..+...++.+.|++|++|+++||+++++|||.+|.|+++. +| .++..+++|++|| +. +++
T Consensus 11 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~g-e~~~~~ 89 (194)
T 3dn7_A 11 HIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLS-DYMAFQ 89 (194)
T ss_dssp HHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEC-CHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEe-ehHHHh
Confidence 58999999999999999999999999999999999999999999999999985 23 4788999999999 66 666
Q ss_pred hccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhhhhh
Q psy8545 271 LSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIREGYE 345 (547)
Q Consensus 271 ~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr~~~e 345 (547)
.+.| +.++++|+++|+++.|++++|.++++.+|++...+.+.+.+++....+....
T Consensus 90 ~~~~-------------------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 145 (194)
T 3dn7_A 90 KQQP-------------------ADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQKSFAAAQLRSKF 145 (194)
T ss_dssp HTCB-------------------CSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCC-------------------CceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554 6679999999999999999999999999999999999888887655444333
No 15
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.66 E-value=1.3e-16 Score=146.25 Aligned_cols=116 Identities=12% Similarity=0.224 Sum_probs=104.3
Q ss_pred cccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE--cC--eEEEEcCCCCeechhhhh
Q psy8545 194 EILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ--NG--MVVAILGKGDLVGCDISM 269 (547)
Q Consensus 194 ~ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~--~~--~vl~~l~~Gd~FG~eisl 269 (547)
.+.++|+|.+++++.+..|+..++.+.|++|++|+++|+.++++|||.+|.|+++. ++ .++..+++|++|| +.++
T Consensus 39 ~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~~G~~fG-e~~~ 117 (161)
T 3idb_B 39 ACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFG-ELAL 117 (161)
T ss_dssp HHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEEEEEEESCCEEC-GGGG
T ss_pred HHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEEEEEcCCCCEec-hHHH
Confidence 34579999999999999999999999999999999999999999999999999986 23 4788999999999 8888
Q ss_pred hhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHH
Q psy8545 270 WLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFA 329 (547)
Q Consensus 270 ~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~ 329 (547)
+.+.+ +.++++|+++|+++.|++++|.++++++|.++..+.
T Consensus 118 ~~~~~-------------------~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~ 158 (161)
T 3idb_B 118 MYNTP-------------------RAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMY 158 (161)
T ss_dssp TCCCC-------------------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC-
T ss_pred HcCCC-------------------cccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHH
Confidence 76554 677999999999999999999999999999876544
No 16
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.65 E-value=6.9e-16 Score=149.64 Aligned_cols=126 Identities=16% Similarity=0.258 Sum_probs=113.3
Q ss_pred cccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE---cC--eEEEEcCCCCeechhhh
Q psy8545 194 EILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---NG--MVVAILGKGDLVGCDIS 268 (547)
Q Consensus 194 ~ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~~--~vl~~l~~Gd~FG~eis 268 (547)
.+.++|+|.+++++.+..+...++.+.|++|++|+++|++++++|||.+|.|+++. +| .++..+++|++|| +.+
T Consensus 7 ~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G-~~~ 85 (231)
T 3e97_A 7 DLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVG-ETA 85 (231)
T ss_dssp HHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEES-TTT
T ss_pred HHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEe-eHH
Confidence 34579999999999999999999999999999999999999999999999999985 22 5789999999999 777
Q ss_pred hhhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q psy8545 269 MWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYN 339 (547)
Q Consensus 269 l~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~ 339 (547)
++.+.+ +.++++|+++|+++.|++++|.++++.+|++...+.+.+.+++...
T Consensus 86 ~~~~~~-------------------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~ 137 (231)
T 3e97_A 86 VLAHQE-------------------RSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRVTFL 137 (231)
T ss_dssp TTCCCC-------------------CCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCC-------------------ceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 776544 7789999999999999999999999999999999998888877644
No 17
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.65 E-value=1.2e-15 Score=147.99 Aligned_cols=128 Identities=17% Similarity=0.311 Sum_probs=115.1
Q ss_pred cccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE-----cCeEEEEcCCCCeechhhhhh
Q psy8545 196 LQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ-----NGMVVAILGKGDLVGCDISMW 270 (547)
Q Consensus 196 l~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~-----~~~vl~~l~~Gd~FG~eisl~ 270 (547)
.++|+|..++++.+..++..++.+.|++|++|+++||+++++|||.+|.|+++. +..++..+++|++|| +.+++
T Consensus 13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G-~~~~~ 91 (232)
T 2gau_A 13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFG-MRPYF 91 (232)
T ss_dssp GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEES-HHHHH
T ss_pred cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEee-eehhh
Confidence 368999999999999999999999999999999999999999999999999984 335899999999999 78887
Q ss_pred hccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhhh
Q psy8545 271 LSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIREG 343 (547)
Q Consensus 271 ~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr~~ 343 (547)
.+.+ +.++++|+++|+++.|++++|.++++.+|++...+.+.+.+++....+..
T Consensus 92 ~~~~-------------------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~ 145 (232)
T 2gau_A 92 AEET-------------------CSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGYAERRT 145 (232)
T ss_dssp HTSC-------------------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-------------------cceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7655 66799999999999999999999999999999999998888877554433
No 18
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.65 E-value=1.2e-15 Score=148.43 Aligned_cols=128 Identities=15% Similarity=0.205 Sum_probs=115.4
Q ss_pred ccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE---cC--eEEEEcCCCCeechhhhh
Q psy8545 195 ILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---NG--MVVAILGKGDLVGCDISM 269 (547)
Q Consensus 195 ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~~--~vl~~l~~Gd~FG~eisl 269 (547)
+.++|+|.+++++.+..++..++.+.|++|++|+++|+.++++|||.+|.|+++. +| .++..+++|++|| +.++
T Consensus 13 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G-~~~~ 91 (237)
T 3fx3_A 13 ARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFG-EAVA 91 (237)
T ss_dssp HTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEEC-HHHH
T ss_pred HhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEec-hHHH
Confidence 4579999999999999999999999999999999999999999999999999996 22 4789999999999 8888
Q ss_pred hhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhh
Q psy8545 270 WLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIRE 342 (547)
Q Consensus 270 ~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr~ 342 (547)
+.+.+ +.++++|+++|+++.|++++|.+++..+|++...+.+.+.+++......
T Consensus 92 ~~~~~-------------------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~ 145 (237)
T 3fx3_A 92 LRNTP-------------------YPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGHLHSLVAQ 145 (237)
T ss_dssp HHTCC-------------------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCC-------------------CCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 76554 6679999999999999999999999999999999999888887755443
No 19
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.64 E-value=5.5e-16 Score=156.54 Aligned_cols=138 Identities=15% Similarity=0.236 Sum_probs=121.3
Q ss_pred hhhhccCCccccccccccccccc-cccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEcC
Q psy8545 173 HETLKEFPEELRGDVSMHLHREI-LQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNG 251 (547)
Q Consensus 173 ~~iL~~Lp~~Lr~~i~~~l~~~l-l~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~ 251 (547)
.....++|...|.+...+....+ .++++|++++++++..|+..++.+.|++|++|+++||.++.+|||++|.|++..++
T Consensus 18 ~~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~g 97 (299)
T 3shr_A 18 RGSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEG 97 (299)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEETT
T ss_pred ccccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEECC
Confidence 34557899999988777766664 47999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCeechhhhhhhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHH
Q psy8545 252 MVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAH 330 (547)
Q Consensus 252 ~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~ 330 (547)
.++..+++|++|| +.+++.+.| +.++|+|.++|+++.|++++|.+++..+|........
T Consensus 98 ~~~~~~~~G~~fG-e~~ll~~~~-------------------~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~ 156 (299)
T 3shr_A 98 VKLCTMGPGKVFG-ELAILYNCT-------------------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYM 156 (299)
T ss_dssp EEEEEECTTCEES-CSGGGTTTB-------------------CCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCeee-HhHHhcCCC-------------------CCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHH
Confidence 9999999999999 888886654 7889999999999999999999999999987654433
No 20
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.64 E-value=2.5e-15 Score=144.26 Aligned_cols=127 Identities=10% Similarity=0.078 Sum_probs=113.6
Q ss_pred ccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE---cC--eEEEEcCCCCe--echhh
Q psy8545 195 ILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---NG--MVVAILGKGDL--VGCDI 267 (547)
Q Consensus 195 ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~~--~vl~~l~~Gd~--FG~ei 267 (547)
+.++|+|.+++++++..+...++.+.|++|++|+++|+.++++|||.+|.|+++. +| .++..+++|++ || +.
T Consensus 5 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g-~~ 83 (220)
T 3dv8_A 5 ENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLS-AS 83 (220)
T ss_dssp CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGG-GG
T ss_pred HHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehh-HH
Confidence 4469999999999999999999999999999999999999999999999999995 23 47899999999 68 77
Q ss_pred hhhhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Q psy8545 268 SMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIR 341 (547)
Q Consensus 268 sl~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr 341 (547)
+++.+.| +.++++|+++|+++.|++++|.+++..+|++...+.+.+.+++.....
T Consensus 84 ~~~~~~~-------------------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~ 138 (220)
T 3dv8_A 84 CIMRSIQ-------------------FEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDVMW 138 (220)
T ss_dssp GGCTTCC-------------------CCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCC-------------------CceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 7776554 677999999999999999999999999999999999888888765443
No 21
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.64 E-value=4.9e-16 Score=150.26 Aligned_cols=128 Identities=15% Similarity=0.299 Sum_probs=115.2
Q ss_pred ccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE---cC--eEEEEcCCCCeechhhhh
Q psy8545 195 ILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---NG--MVVAILGKGDLVGCDISM 269 (547)
Q Consensus 195 ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~~--~vl~~l~~Gd~FG~eisl 269 (547)
+.++|+|.+++++.+..++..++.+.|++|++|+++||+++++|||.+|.|+++. +| .++..+++|++|| +.++
T Consensus 8 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G-~~~~ 86 (227)
T 3d0s_A 8 LARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFG-ELSI 86 (227)
T ss_dssp HTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEES-CHHH
T ss_pred HhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEe-eHHH
Confidence 4579999999999999999999999999999999999999999999999999985 23 4789999999999 8888
Q ss_pred hhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhh
Q psy8545 270 WLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIRE 342 (547)
Q Consensus 270 ~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr~ 342 (547)
+.+.+ +.++++|+++|+++.|++++|.++++.+|++...+.+.+.+++....+.
T Consensus 87 ~~~~~-------------------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~ 140 (227)
T 3d0s_A 87 FDPGP-------------------RTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNN 140 (227)
T ss_dssp HSCSC-------------------CSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCC-------------------ceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHH
Confidence 76554 6779999999999999999999999999999999999888887755443
No 22
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.62 E-value=4.3e-15 Score=144.65 Aligned_cols=129 Identities=15% Similarity=0.192 Sum_probs=114.2
Q ss_pred ccccchhhhccHHHHHHHHhh--ccccccCCCcEEEccCCCCCcEEEEEceeEEEEE-----cCeEEEEcCCCCeechhh
Q psy8545 195 ILQLPIFEAATQGCLKLLSLH--IRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ-----NGMVVAILGKGDLVGCDI 267 (547)
Q Consensus 195 ll~iplF~~ls~~~l~~L~~~--l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~-----~~~vl~~l~~Gd~FG~ei 267 (547)
+.++|+|..++++.+..++.. ++.+.|++|++|+++||.++++|||.+|.|+++. +..++..+++|++|| +.
T Consensus 20 l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~fG-~~ 98 (232)
T 1zyb_A 20 LLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIE-PQ 98 (232)
T ss_dssp GGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEEC-GG
T ss_pred HhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCeee-eh
Confidence 457999999999999999998 9999999999999999999999999999999985 235889999999999 77
Q ss_pred hhhhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhh
Q psy8545 268 SMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIRE 342 (547)
Q Consensus 268 sl~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr~ 342 (547)
+++.+.+ ++.++++|+++|+++.|++++|.++++.+|++...+.+.+.+++....+.
T Consensus 99 ~~~~~~~------------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~ 155 (232)
T 1zyb_A 99 SLFGMNT------------------NYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSR 155 (232)
T ss_dssp GGSSSCC------------------BCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCC------------------CCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 7765432 15679999999999999999999999999999999999888887654433
No 23
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.62 E-value=2.2e-15 Score=154.61 Aligned_cols=123 Identities=18% Similarity=0.259 Sum_probs=112.7
Q ss_pred ccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEcC----eEEEEcCCCCeechhhhhh
Q psy8545 195 ILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNG----MVVAILGKGDLVGCDISMW 270 (547)
Q Consensus 195 ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~----~vl~~l~~Gd~FG~eisl~ 270 (547)
+.++|+|++++++++..|+..++.+.|++|++|+++||.++++|||.+|.|+++..+ .++..+++|++|| +.+++
T Consensus 15 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fG-e~~l~ 93 (333)
T 4ava_A 15 LAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVG-EIALL 93 (333)
T ss_dssp HTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEES-HHHHH
T ss_pred HhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEee-HHHhc
Confidence 457999999999999999999999999999999999999999999999999998622 3889999999999 88888
Q ss_pred hccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q psy8545 271 LSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTY 338 (547)
Q Consensus 271 ~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~ 338 (547)
.+.+ ++++++|+++|+++.|++++|.+++ ++|++...+.+.+.+++..
T Consensus 94 ~~~~-------------------~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~~~ 141 (333)
T 4ava_A 94 RDSP-------------------RSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRLAA 141 (333)
T ss_dssp HTCB-------------------CSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHHHH
T ss_pred CCCC-------------------ceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHHHh
Confidence 7655 7789999999999999999999999 9999999999888877763
No 24
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.62 E-value=4.4e-15 Score=143.49 Aligned_cols=130 Identities=15% Similarity=0.362 Sum_probs=107.3
Q ss_pred ccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE---cC--eEEEEcCCCCeechhhhh
Q psy8545 195 ILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---NG--MVVAILGKGDLVGCDISM 269 (547)
Q Consensus 195 ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~~--~vl~~l~~Gd~FG~eisl 269 (547)
+.+.++|.+++++.++.+..+++.+.|++|++|+++||+++++|||.+|.|+++. +| .++..+++|++|| +.++
T Consensus 13 lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G-~~~~ 91 (230)
T 3iwz_A 13 VRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVG-EMGL 91 (230)
T ss_dssp ---------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEES-CGGG
T ss_pred hhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEE-ehhh
Confidence 4568999999999999999999999999999999999999999999999999995 22 4789999999999 7777
Q ss_pred hhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHhhhh
Q psy8545 270 WLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLY-----PEYQQEFAHDIQHDLTYNIREG 343 (547)
Q Consensus 270 ~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~-----P~~~~~~~~~l~~~L~~~lr~~ 343 (547)
+.+.+ ++.++++|+++|+++.|++++|.++++.+ |++...+.+.+.+++....+..
T Consensus 92 ~~~~~------------------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l~~~~~~~ 152 (230)
T 3iwz_A 92 FIESD------------------TREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKRLLDTTRKA 152 (230)
T ss_dssp TSCCS------------------BCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCC------------------CceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 65431 26679999999999999999999999999 9999999998888877554443
No 25
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.60 E-value=1.7e-15 Score=146.10 Aligned_cols=129 Identities=13% Similarity=0.215 Sum_probs=113.8
Q ss_pred ccccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE---c--CeEEEEcCCCCeechhh
Q psy8545 193 REILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---N--GMVVAILGKGDLVGCDI 267 (547)
Q Consensus 193 ~~ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~--~~vl~~l~~Gd~FG~ei 267 (547)
..+.++|+|.+++++.+..+...++.+.|++|++|+++|++++++|||.+|.|+++. + ..++..+++|++|| +.
T Consensus 9 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G-~~ 87 (227)
T 3dkw_A 9 QLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFA-EA 87 (227)
T ss_dssp HHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEES-CT
T ss_pred HHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEee-eH
Confidence 345679999999999999999999999999999999999999999999999999985 2 24788999999999 77
Q ss_pred hhhhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Q psy8545 268 SMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNI 340 (547)
Q Consensus 268 sl~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~l 340 (547)
+++.+.| ++.++++|+++|+++.|++++|.++++.+|++...+.+.+.+++....
T Consensus 88 ~~~~~~~------------------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~ 142 (227)
T 3dkw_A 88 MMFMDTP------------------NYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRI 142 (227)
T ss_dssp TTTTTCS------------------BCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCC------------------CCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 7765433 156799999999999999999999999999999999988888776543
No 26
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.60 E-value=5.5e-15 Score=148.28 Aligned_cols=122 Identities=17% Similarity=0.202 Sum_probs=111.0
Q ss_pred ccccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeechhhhhhhc
Q psy8545 193 REILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVGCDISMWLS 272 (547)
Q Consensus 193 ~~ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG~eisl~~~ 272 (547)
..+.++|+|.+++++.+..++..++...|++|++|+++||.++.+|||++|.|+++.++..+..+++|++|| +.+++.+
T Consensus 39 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~g~~~~~l~~G~~fG-e~~l~~~ 117 (291)
T 2qcs_B 39 KAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFG-ELALIYG 117 (291)
T ss_dssp HHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEETTEEEEEECTTCEEC-GGGGTCC
T ss_pred HHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEECCeEEEEcCCCCccc-hHHHhcC
Confidence 345579999999999999999999999999999999999999999999999999999999999999999999 7888765
Q ss_pred cCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHH
Q psy8545 273 EKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQH 334 (547)
Q Consensus 273 ~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~ 334 (547)
.+ +.++++|.++|+++.|++++|.+++..+|.+...+...+.+
T Consensus 118 ~~-------------------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (291)
T 2qcs_B 118 TP-------------------RAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 160 (291)
T ss_dssp CB-------------------CSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-------------------CceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHh
Confidence 54 77899999999999999999999999999988777655443
No 27
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.4e-15 Score=148.25 Aligned_cols=120 Identities=17% Similarity=0.240 Sum_probs=109.1
Q ss_pred cccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeechhhhhhhcc
Q psy8545 194 EILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVGCDISMWLSE 273 (547)
Q Consensus 194 ~ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG~eisl~~~~ 273 (547)
.+.++|+|.+++++.+..++..++.+.|++|++|+++||.++++|||++|.|+++.++..+..+++|++|| +.+++.+.
T Consensus 8 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~g~~fG-e~~l~~~~ 86 (246)
T 3of1_A 8 SIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDNKVNSSGPGSSFG-ELALMYNS 86 (246)
T ss_dssp HHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEESTTSCCEEECTTCEEC-HHHHHHTC
T ss_pred HHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEECCEEEEecCCCCeee-hhHHhcCC
Confidence 34579999999999999999999999999999999999999999999999999999888889999999999 88888765
Q ss_pred CCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHH
Q psy8545 274 KNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQ 333 (547)
Q Consensus 274 p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~ 333 (547)
| +.++++|.++|+++.|++++|.+++..+|..+..+...+.
T Consensus 87 ~-------------------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 127 (246)
T 3of1_A 87 P-------------------RAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLL 127 (246)
T ss_dssp C-------------------CSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHH
T ss_pred C-------------------CCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHH
Confidence 5 7789999999999999999999999999987766554443
No 28
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.59 E-value=8.1e-16 Score=136.68 Aligned_cols=118 Identities=21% Similarity=0.357 Sum_probs=98.5
Q ss_pred ccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE--cC--eE--EEEcCCCCeechhhh
Q psy8545 195 ILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ--NG--MV--VAILGKGDLVGCDIS 268 (547)
Q Consensus 195 ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~--~~--~v--l~~l~~Gd~FG~eis 268 (547)
+.++|+|..++++.++.++..++.+.|++|++|+++||.++.+|||++|.|++.. ++ .+ +..+++|++|| +.+
T Consensus 8 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fG-e~~ 86 (137)
T 1wgp_A 8 VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCG-DEL 86 (137)
T ss_dssp CSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSS-THH
T ss_pred HHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEec-HHH
Confidence 4579999999999999999999999999999999999999999999999999763 23 23 34999999999 777
Q ss_pred h---hhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHH
Q psy8545 269 M---WLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQ 326 (547)
Q Consensus 269 l---~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~ 326 (547)
+ +.+.+... ..++.++++|+++|+++.|++++|.++++++|+++.
T Consensus 87 l~~~~~~~~~~~-------------~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 87 LTWALDPKSGSN-------------LPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp HHHHHCSSCCSS-------------SCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHhccccccc-------------cccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 5 54332100 002568999999999999999999999999987654
No 29
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.59 E-value=3.2e-15 Score=150.87 Aligned_cols=126 Identities=17% Similarity=0.316 Sum_probs=115.4
Q ss_pred cccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEcC------eEEEEcCCCCeechhhhh
Q psy8545 196 LQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNG------MVVAILGKGDLVGCDISM 269 (547)
Q Consensus 196 l~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~------~vl~~l~~Gd~FG~eisl 269 (547)
.++|+|..++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|+++..+ .++..+++|++|| +.++
T Consensus 160 ~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~fG-e~~l 238 (299)
T 3shr_A 160 KSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFG-EKAL 238 (299)
T ss_dssp TTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEEC-GGGG
T ss_pred hhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEeC-hHHH
Confidence 35899999999999999999999999999999999999999999999999999643 4789999999999 8888
Q ss_pred hhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Q psy8545 270 WLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIR 341 (547)
Q Consensus 270 ~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr 341 (547)
+.+.| +.++|+|.++|+++.|++++|.+++..+|++...+.+.+.+|+.....
T Consensus 239 l~~~~-------------------~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~~~~~~ 291 (299)
T 3shr_A 239 QGEDV-------------------RTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKAKYEAE 291 (299)
T ss_dssp SSSEE-------------------CSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred hCCCC-------------------cceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhhhcchh
Confidence 76554 778999999999999999999999999999999999999988875544
No 30
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.58 E-value=1e-14 Score=138.95 Aligned_cols=125 Identities=20% Similarity=0.434 Sum_probs=106.7
Q ss_pred chhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE---cC--eEEEEcCCCCeechhhhhhhcc
Q psy8545 199 PIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---NG--MVVAILGKGDLVGCDISMWLSE 273 (547)
Q Consensus 199 plF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~~--~vl~~l~~Gd~FG~eisl~~~~ 273 (547)
++++.++++++..++.+++.+.|++|++|+++|++++++|||.+|.|+++. +| .++..+++|++|| +.+++.+.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G-~~~~~~~~ 80 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIG-ELGLFEEG 80 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEES-CTTTTSTT
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEee-eHHHhcCC
Confidence 467779999999999999999999999999999999999999999999985 23 4789999999999 77776544
Q ss_pred CCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhh
Q psy8545 274 KNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIRE 342 (547)
Q Consensus 274 p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr~ 342 (547)
+ ++.++++|+++|+++.|++++|.++++.+|++...+.+.+.+++....+.
T Consensus 81 ~------------------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~ 131 (210)
T 3ryp_A 81 Q------------------ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEK 131 (210)
T ss_dssp C------------------BCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHH
T ss_pred C------------------CceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHH
Confidence 1 26779999999999999999999999999999999999888887655443
No 31
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.57 E-value=6.8e-16 Score=137.09 Aligned_cols=124 Identities=19% Similarity=0.232 Sum_probs=102.5
Q ss_pred Ccccccccccc-ccccccccchhhhccHHHHHHHHhhccccccC-CCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEc
Q psy8545 180 PEELRGDVSMH-LHREILQLPIFEAATQGCLKLLSLHIRNNFCA-PGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAIL 257 (547)
Q Consensus 180 p~~Lr~~i~~~-l~~~ll~iplF~~ls~~~l~~L~~~l~~~~y~-~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l 257 (547)
||+.|.+.... +...+.++++|..++++.+..|+..++.+.|+ +|++|+++|+.++.+|||++|.|+++..+.....+
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g~~~~l 81 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGKVENL 81 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSSSCEEEE
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCCcEEEe
Confidence 34455443332 33345579999999999999999999999999 99999999999999999999999999744333789
Q ss_pred CCCCeechhhhhhhccCCCCCCCCCCCCCCCCCccceeEEE-EEeeeeEEEEEeHHHHHHHHHhCHH
Q psy8545 258 GKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDV-KALTYCDLKSVNVVGLVEVLRLYPE 323 (547)
Q Consensus 258 ~~Gd~FG~eisl~~~~p~~~s~~~~~~~~~~~~~~~~~~tv-~Alt~c~ll~I~~~~f~~ll~~~P~ 323 (547)
++|++|| +.+++.+.+ +.+++ +|+++|+++.|++++|.++++.+++
T Consensus 82 ~~G~~fG-~~~~~~~~~-------------------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~ 128 (134)
T 2d93_A 82 FMGNSFG-ITPTLDKQY-------------------MHGIVRTKVDDCQFVCIAQQDYWRILNHVEK 128 (134)
T ss_dssp CTTCEES-CCSSSCCEE-------------------CCSEEEESSSSEEEEEEEHHHHHHHSSCCSS
T ss_pred cCCCccC-hhHhcCCCc-------------------ceeEEEEEecceEEEEEeHHHHHHHHHHHHh
Confidence 9999999 777776544 55678 9999999999999999999887653
No 32
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.57 E-value=2.5e-14 Score=135.89 Aligned_cols=122 Identities=19% Similarity=0.353 Sum_probs=104.0
Q ss_pred ccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE---cC--eEEEEcCCCCeechhhhhhhccCCCCC
Q psy8545 204 ATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---NG--MVVAILGKGDLVGCDISMWLSEKNGGS 278 (547)
Q Consensus 204 ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~~--~vl~~l~~Gd~FG~eisl~~~~p~~~s 278 (547)
++++.++.++.+++.+.|++|++|+++|+.++++|||.+|.|+++. +| .++..+++|++|| +.+++.+.+.
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G-~~~~~~~~~~--- 76 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFG-ELGLFEKEGS--- 76 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEES-CTTTCC-------
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcc-cHHHhcCCCC---
Confidence 5789999999999999999999999999999999999999999985 23 4789999999999 7777654300
Q ss_pred CCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Q psy8545 279 AVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIR 341 (547)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr 341 (547)
..++.++++|+++|+++.|++++|.++++.+|++...+.+.+.+++.....
T Consensus 77 ------------~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~ 127 (207)
T 2oz6_A 77 ------------EQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTR 127 (207)
T ss_dssp -------------CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------CCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 002677999999999999999999999999999999999888888765443
No 33
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.55 E-value=1.4e-14 Score=139.04 Aligned_cols=127 Identities=17% Similarity=0.151 Sum_probs=103.7
Q ss_pred cchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE---cC--eEEEEcCCCCeechhhhhhhc
Q psy8545 198 LPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---NG--MVVAILGKGDLVGCDISMWLS 272 (547)
Q Consensus 198 iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~~--~vl~~l~~Gd~FG~eisl~~~ 272 (547)
-|+|...++..+..+...++.+.|++|++|+++|+.++++|||.+|.|+++. +| .++..+++|++|| +.+++.+
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G-~~~~~~~ 82 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIA-SGFIFSS 82 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESS-GGGTTSS
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEee-eHHHhcC
Confidence 4788888999999999999999999999999999999999999999999985 23 4789999999999 7777654
Q ss_pred cCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhhh
Q psy8545 273 EKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIREG 343 (547)
Q Consensus 273 ~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr~~ 343 (547)
.. ++.++++|+++|+++.|++++|.++++.+|++...+.+.+.+++.......
T Consensus 83 ~~------------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~~~~~~~~ 135 (213)
T 1o5l_A 83 EP------------------RFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFRVVSEKL 135 (213)
T ss_dssp SC------------------BCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC------------------CceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 31 266799999999999999999999999999999999999888877544333
No 34
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.55 E-value=7.3e-15 Score=154.49 Aligned_cols=121 Identities=17% Similarity=0.184 Sum_probs=111.1
Q ss_pred ccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeechhhhhhhccC
Q psy8545 195 ILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVGCDISMWLSEK 274 (547)
Q Consensus 195 ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG~eisl~~~~p 274 (547)
+.++++|++++++.+..|+..++.+.|++|++|+++||.++++|||.+|.|+++.++..+..+++|++|| +++++.+.|
T Consensus 132 l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~~~~~v~~l~~G~~fG-e~all~~~~ 210 (381)
T 4din_B 132 ISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNGEWVTNISEGGSFG-ELALIYGTP 210 (381)
T ss_dssp HTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEETTEEEEEEESSCCBC-GGGGTSCCB
T ss_pred HhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEECCeEeeeCCCCCEEE-chHHhcCCC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999 888887655
Q ss_pred CCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHH
Q psy8545 275 NGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHD 335 (547)
Q Consensus 275 ~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~ 335 (547)
+.++++|.++|+++.|++++|.+++..+|.....+...+.++
T Consensus 211 -------------------r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~ 252 (381)
T 4din_B 211 -------------------RAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSK 252 (381)
T ss_dssp -------------------CSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------cceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhhh
Confidence 778999999999999999999999999999888776555444
No 35
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.55 E-value=2.6e-14 Score=141.84 Aligned_cols=123 Identities=20% Similarity=0.438 Sum_probs=105.0
Q ss_pred hhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE---cC--eEEEEcCCCCeechhhhhhhccCC
Q psy8545 201 FEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---NG--MVVAILGKGDLVGCDISMWLSEKN 275 (547)
Q Consensus 201 F~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~~--~vl~~l~~Gd~FG~eisl~~~~p~ 275 (547)
+..++++.+..+...++.+.|++|++|+++|++++++|||++|.|+++. +| .++..+++|++|| +.+++.+.+
T Consensus 54 ~~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~G-e~~~~~~~~- 131 (260)
T 3kcc_A 54 GKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIG-ELGLFEEGQ- 131 (260)
T ss_dssp -----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEES-CTTTTSTTC-
T ss_pred cCCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEe-ehHHhCCCC-
Confidence 3458999999999999999999999999999999999999999999995 23 4789999999999 777765541
Q ss_pred CCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhh
Q psy8545 276 GGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIRE 342 (547)
Q Consensus 276 ~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr~ 342 (547)
++.++++|+++|+++.|++++|.+++..+|++...+.+.+.+++....+.
T Consensus 132 -----------------~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~l~~~~~~ 181 (260)
T 3kcc_A 132 -----------------ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEK 181 (260)
T ss_dssp -----------------BCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 26779999999999999999999999999999999999888887755443
No 36
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.54 E-value=2e-14 Score=138.39 Aligned_cols=120 Identities=11% Similarity=0.203 Sum_probs=108.0
Q ss_pred ccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE--cC--eEEEEcCCCCeechhhhhh
Q psy8545 195 ILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ--NG--MVVAILGKGDLVGCDISMW 270 (547)
Q Consensus 195 ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~--~~--~vl~~l~~Gd~FG~eisl~ 270 (547)
+.++|+|..++++.+..+...++.+.|++|++|+++||.++++|||.+|.|+++. +| .++..+++|++|| +
T Consensus 6 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G-~---- 80 (220)
T 2fmy_A 6 LTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFC-T---- 80 (220)
T ss_dssp SCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEE-S----
T ss_pred hhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeC-C----
Confidence 4469999999999999999999999999999999999999999999999999963 23 4789999999999 4
Q ss_pred hccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Q psy8545 271 LSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIR 341 (547)
Q Consensus 271 ~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr 341 (547)
+ +.++++|+++|+++.|++++|.++++.+|++...+.+.+.+++.....
T Consensus 81 ---~-------------------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~ 129 (220)
T 2fmy_A 81 ---H-------------------TRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLKNSLT 129 (220)
T ss_dssp ---C-------------------SSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHH
T ss_pred ---c-------------------cceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 3 567999999999999999999999999999999999988887765443
No 37
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2e-14 Score=139.98 Aligned_cols=112 Identities=19% Similarity=0.311 Sum_probs=102.9
Q ss_pred cccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCe-EEEEcCCCCeechhhhhhhccC
Q psy8545 196 LQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGM-VVAILGKGDLVGCDISMWLSEK 274 (547)
Q Consensus 196 l~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~-vl~~l~~Gd~FG~eisl~~~~p 274 (547)
.++++|..+++..+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+. .+..+++|++|| |.+++.+.|
T Consensus 128 ~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~~~~~l~~g~~fG-e~~~~~~~~ 206 (246)
T 3of1_A 128 KSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFG-EVALLNDLP 206 (246)
T ss_dssp HHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTEEEEEEETTCEEC-HHHHHHTCB
T ss_pred hhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCceEEEcCCCCccc-HHHHhCCCC
Confidence 358999999999999999999999999999999999999999999999999998554 899999999999 888887655
Q ss_pred CCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHH
Q psy8545 275 NGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQE 327 (547)
Q Consensus 275 ~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~ 327 (547)
+.++|+|.++|+++.|++++|.+++..+|++.++
T Consensus 207 -------------------~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~~ 240 (246)
T 3of1_A 207 -------------------RQATVTATKRTKVATLGKSGFQRLLGPAVDVLKL 240 (246)
T ss_dssp -------------------CSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHHH
T ss_pred -------------------cccEEEECCCEEEEEEeHHHHHHHhccHHHHHhc
Confidence 7789999999999999999999999999987543
No 38
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.51 E-value=1.4e-14 Score=130.76 Aligned_cols=92 Identities=18% Similarity=0.288 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCc
Q psy8545 70 YITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRRSLYQTKWRDLKEFLTLNQIP 149 (547)
Q Consensus 70 Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~~~~~~~~~~k~~~l~~fm~~~~ip 149 (547)
|..|+||++.|+|||||||+.|.|..+++++++++++|+.+++++++.+++.+..........++..+..+...+..++.
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLT 123 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC---------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 77799999999999999999999999999999999999999999999999887654443333222222222222334455
Q ss_pred hHHHHhhhhhhh
Q psy8545 150 KELKQRMQDYFQ 161 (547)
Q Consensus 150 ~~L~~rv~~Y~~ 161 (547)
++....+++|.+
T Consensus 124 ~~~i~~l~~~l~ 135 (137)
T 4h33_A 124 KEEIAVVEQFLT 135 (137)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 555555555443
No 39
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.51 E-value=9.4e-14 Score=126.94 Aligned_cols=86 Identities=27% Similarity=0.328 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHH------HHHHH----HhhHHHHHHHHHHh
Q psy8545 70 YITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTA------IIQRM----YSRRSLYQTKWRDL 139 (547)
Q Consensus 70 Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~------ii~~~----~~~~~~~~~k~~~l 139 (547)
|..|+||++.|+|||||||+.|.|..+++++++++++|+.+++++++.++. +.... +..+.+..++++++
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999999999999999999999999999999999999886 33332 34445566788999
Q ss_pred hhhhhccCCchHHHHh
Q psy8545 140 KEFLTLNQIPKELKQR 155 (547)
Q Consensus 140 ~~fm~~~~ip~~L~~r 155 (547)
++++++++.|++|+.|
T Consensus 133 ~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHhcCCCcCCCCC
Confidence 9999999999999875
No 40
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.49 E-value=4.3e-14 Score=136.35 Aligned_cols=120 Identities=15% Similarity=0.202 Sum_probs=107.7
Q ss_pred cccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE--cC--eEEEEcCCCCeechhhhhhh
Q psy8545 196 LQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ--NG--MVVAILGKGDLVGCDISMWL 271 (547)
Q Consensus 196 l~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~--~~--~vl~~l~~Gd~FG~eisl~~ 271 (547)
.++|+|..++++.+..++..++.+.|++|++|+++|++++++|||.+|.|+++. +| .++..+++|++||
T Consensus 3 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG------- 75 (222)
T 1ft9_A 3 PRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC------- 75 (222)
T ss_dssp CCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE-------
T ss_pred ccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec-------
Confidence 468999999999999999999999999999999999999999999999999963 33 4789999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhh
Q psy8545 272 SEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIRE 342 (547)
Q Consensus 272 ~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr~ 342 (547)
.+ +.++++|+++|+++.|++++|.++++.+|++...+.+.+.+++......
T Consensus 76 -~~-------------------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~ 126 (222)
T 1ft9_A 76 -MH-------------------SGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTSCMRT 126 (222)
T ss_dssp -SC-------------------SSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred -CC-------------------CCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHH
Confidence 22 6679999999999999999999999999999999999888887654433
No 41
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.49 E-value=5e-14 Score=151.23 Aligned_cols=122 Identities=19% Similarity=0.261 Sum_probs=103.5
Q ss_pred ccccccccchhhhccHHHHHHHHhhccc-cccCCCcEEEccCCCCCcEEEEEceeEEEEEcC-eEEEEcCCCCeechhhh
Q psy8545 191 LHREILQLPIFEAATQGCLKLLSLHIRN-NFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNG-MVVAILGKGDLVGCDIS 268 (547)
Q Consensus 191 l~~~ll~iplF~~ls~~~l~~L~~~l~~-~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~-~vl~~l~~Gd~FG~eis 268 (547)
+...+.++++|.+++++.+..++..+.. +.|++|++|+++||.++.+|||.+|.|+++.++ .++..+++|++|| +.+
T Consensus 335 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~l~~G~~fG-e~~ 413 (469)
T 1o7f_A 335 IYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFG-KLA 413 (469)
T ss_dssp HHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTEEEEEEETTCEEC-GGG
T ss_pred HHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCCeeEEEecCCCEEE-Eeh
Confidence 3445667999999999999999999985 489999999999999999999999999999865 4899999999999 888
Q ss_pred hhhccCCCCCCCCCCCCCCCCCccceeEEEEEee-eeEEEEEeHHHHHHHHHhCHHHHHHHHHHH
Q psy8545 269 MWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALT-YCDLKSVNVVGLVEVLRLYPEYQQEFAHDI 332 (547)
Q Consensus 269 l~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt-~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l 332 (547)
++.+.| +.++|+|++ +|+++.|++++|.+++..+|++...+....
T Consensus 414 ll~~~~-------------------~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e~~ 459 (469)
T 1o7f_A 414 LVNDAP-------------------RAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEHD 459 (469)
T ss_dssp GTCCSC-------------------CSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC--------
T ss_pred hhcCCC-------------------ceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHhcC
Confidence 887655 778999999 799999999999999999999988886544
No 42
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.49 E-value=6.8e-14 Score=148.88 Aligned_cols=128 Identities=14% Similarity=0.203 Sum_probs=103.7
Q ss_pred ccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEc---------C--eEEEEcCCCCeech
Q psy8545 197 QLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQN---------G--MVVAILGKGDLVGC 265 (547)
Q Consensus 197 ~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~---------~--~vl~~l~~Gd~FG~ 265 (547)
++++|..++...+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++.. + .++..+++|++||
T Consensus 271 ~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G~~fG- 349 (416)
T 3tnp_B 271 SLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFG- 349 (416)
T ss_dssp GCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTTCEES-
T ss_pred hchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCCCEec-
Confidence 589999999999999999999999999999999999999999999999999842 2 3789999999999
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhhhh
Q psy8545 266 DISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIREGY 344 (547)
Q Consensus 266 eisl~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr~~~ 344 (547)
|.+++.+.+ +.++|+|+++|+++.|++++|.+++..+|++..++...+.+++........
T Consensus 350 E~all~~~~-------------------r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~~~~L~~~~~~~~ 409 (416)
T 3tnp_B 350 ELALVTNKP-------------------RAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQLVALFGTNM 409 (416)
T ss_dssp GGGGTCCSC-------------------CSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC----------------
T ss_pred HHHHhCCCC-------------------ceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHHHHHHHHHhCCcc
Confidence 888886654 778999999999999999999999999999998888888777765544433
No 43
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.48 E-value=1.2e-13 Score=138.41 Aligned_cols=117 Identities=15% Similarity=0.210 Sum_probs=105.6
Q ss_pred ccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE---cC---eEEEEcCCCCeechhhhhh
Q psy8545 197 QLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---NG---MVVAILGKGDLVGCDISMW 270 (547)
Q Consensus 197 ~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~~---~vl~~l~~Gd~FG~eisl~ 270 (547)
++++|..++...+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++. ++ ..+..+++|++|| |.+++
T Consensus 161 ~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fG-e~~ll 239 (291)
T 2qcs_B 161 KVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFG-EIALL 239 (291)
T ss_dssp TCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEEC-SGGGT
T ss_pred hchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEec-HHHHc
Confidence 57999999999999999999999999999999999999999999999999985 22 4789999999999 88887
Q ss_pred hccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHH
Q psy8545 271 LSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQ 333 (547)
Q Consensus 271 ~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~ 333 (547)
.+.| +.++++|.++|+++.|++++|.+++..+|++...+.+...
T Consensus 240 ~~~~-------------------~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~~ 283 (291)
T 2qcs_B 240 MNRP-------------------KAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYN 283 (291)
T ss_dssp CCCC-------------------CSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHHH
T ss_pred CCCC-------------------cceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHHH
Confidence 6554 7789999999999999999999999999998877765543
No 44
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.47 E-value=1.2e-13 Score=147.02 Aligned_cols=116 Identities=12% Similarity=0.228 Sum_probs=104.7
Q ss_pred ccccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEc----CeEEEEcCCCCeechhhh
Q psy8545 193 REILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQN----GMVVAILGKGDLVGCDIS 268 (547)
Q Consensus 193 ~~ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~----~~vl~~l~~Gd~FG~eis 268 (547)
..+.++++|++++++.+..|+..++.+.|++|++|+++||.++++|||++|.|+++.+ +.++..+++|++|| +++
T Consensus 145 ~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v~~l~~G~~fG-e~a 223 (416)
T 3tnp_B 145 EACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFG-ELA 223 (416)
T ss_dssp HHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEEEEEEESCCEEC-GGG
T ss_pred HHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEEEEEecCCCEEe-eHH
Confidence 3455799999999999999999999999999999999999999999999999999863 35788999999999 888
Q ss_pred hhhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHH
Q psy8545 269 MWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEF 328 (547)
Q Consensus 269 l~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~ 328 (547)
++.+.| +.++|+|.++|+++.|++++|.+++..+|.....+
T Consensus 224 ll~~~p-------------------r~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~~ 264 (416)
T 3tnp_B 224 LMYNTP-------------------KAATITATSPGALWGLDRVTFRRIIVKNNAKKRKM 264 (416)
T ss_dssp GTSCCC-------------------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSSS
T ss_pred HhcCCC-------------------cccEEEEccCeEEEEEeehhhhhhhhcchhHHHHH
Confidence 887655 78899999999999999999999999999876543
No 45
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.44 E-value=1.2e-13 Score=145.17 Aligned_cols=120 Identities=18% Similarity=0.202 Sum_probs=108.3
Q ss_pred ccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEc------CeEEEEcCCCCeechhhhhh
Q psy8545 197 QLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQN------GMVVAILGKGDLVGCDISMW 270 (547)
Q Consensus 197 ~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~------~~vl~~l~~Gd~FG~eisl~ 270 (547)
++++|..+++..+..++..++...|.+|++|+++|+.++.+|||.+|.|+++.. ...+..+++|++|| |.+++
T Consensus 252 ~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~fG-e~all 330 (381)
T 4din_B 252 KVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFG-EIALL 330 (381)
T ss_dssp HCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEEC-TTGGG
T ss_pred hhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEec-hHHHh
Confidence 478999999999999999999999999999999999999999999999999963 23689999999999 88888
Q ss_pred hccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHH
Q psy8545 271 LSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDL 336 (547)
Q Consensus 271 ~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L 336 (547)
.+.| +.++|+|.++|+++.|++++|.+++..+|++.++.+......+
T Consensus 331 ~~~~-------------------r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~~~l 377 (381)
T 4din_B 331 LNRP-------------------RAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNSFI 377 (381)
T ss_dssp SCCB-------------------CSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHHHHH
T ss_pred CCCC-------------------ceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 7655 7789999999999999999999999999999888876665544
No 46
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.44 E-value=4.2e-14 Score=151.82 Aligned_cols=130 Identities=15% Similarity=0.188 Sum_probs=109.8
Q ss_pred CCccccccccccccc-cccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE---cC---
Q psy8545 179 FPEELRGDVSMHLHR-EILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---NG--- 251 (547)
Q Consensus 179 Lp~~Lr~~i~~~l~~-~ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~~--- 251 (547)
.|+..|.+....... .+.++++|.+++++.+..|+.+++.+.|++|++|+++||.++.+|||.+|.|+++. +|
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 345555544443333 35579999999999999999999999999999999999999999999999999986 22
Q ss_pred -eEEEEcCCCCeechhhhhhhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHH
Q psy8545 252 -MVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFA 329 (547)
Q Consensus 252 -~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~ 329 (547)
.++..+++|++|| +.+ +.+.+ +.++++|.++|+++.|++++|.+++..+|++...+.
T Consensus 107 ~~~~~~~~~G~~fG-e~~-l~~~~-------------------~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~ 164 (469)
T 1o7f_A 107 AVTICTLGIGTAFG-ESI-LDNTP-------------------RHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLL 164 (469)
T ss_dssp CEEEEEECTTCEEC-GGG-GGTCB-------------------CSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTS
T ss_pred ceEEEEccCCCCcc-hhh-hCCCC-------------------ccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHH
Confidence 6899999999999 777 65544 778999999999999999999999999998665443
No 47
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.43 E-value=1.1e-12 Score=128.56 Aligned_cols=117 Identities=16% Similarity=0.279 Sum_probs=102.1
Q ss_pred HHHHHHHHhhcc---ccccCCCcEEEccCCCCCcEEEEEceeEEEEE---cC--eEEEEcCCCCeechhhhhhhccCCCC
Q psy8545 206 QGCLKLLSLHIR---NNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---NG--MVVAILGKGDLVGCDISMWLSEKNGG 277 (547)
Q Consensus 206 ~~~l~~L~~~l~---~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~~--~vl~~l~~Gd~FG~eisl~~~~p~~~ 277 (547)
++.++.|..... .+.|++|++|+++|+.++++|||++|.|+++. +| .++..+++|++|| +.+++.+.+.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G-~~~~~~~~~~-- 106 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFG-VLSLLTGNKS-- 106 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEES-CHHHHSSCCS--
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEc-chHHhCCCCC--
Confidence 677888888888 99999999999999999999999999999985 22 4789999999999 7888765431
Q ss_pred CCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Q psy8545 278 SAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNI 340 (547)
Q Consensus 278 s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~l 340 (547)
.+.++++|+++|+++.|++++|.++++.+|++...+.+.+.+++....
T Consensus 107 ---------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~ 154 (243)
T 3la7_A 107 ---------------DRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRILQTE 154 (243)
T ss_dssp ---------------BCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------cceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 144799999999999999999999999999999999988888776543
No 48
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.41 E-value=6.1e-13 Score=130.70 Aligned_cols=121 Identities=16% Similarity=0.158 Sum_probs=105.8
Q ss_pred hhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE---cC--eEEEEcCCCCeechhhhhhhccC
Q psy8545 200 IFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---NG--MVVAILGKGDLVGCDISMWLSEK 274 (547)
Q Consensus 200 lF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~~--~vl~~l~~Gd~FG~eisl~~~~p 274 (547)
.|..++++++..+...++.+.|++|++|+++|++++++|||.+|.|+++. +| .++..+++|++|| + ++.+
T Consensus 16 p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G-~--~l~~-- 90 (250)
T 3e6c_C 16 PDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIG-K--LYPT-- 90 (250)
T ss_dssp SBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEEC-C--CSCC--
T ss_pred chhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEe-e--ecCC--
Confidence 34888999999999999999999999999999999999999999999985 22 4789999999999 5 3321
Q ss_pred CCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhhh
Q psy8545 275 NGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIREG 343 (547)
Q Consensus 275 ~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr~~ 343 (547)
. +.++++|+++|+++.|++++|.+++..+|++...+.+.+.+++....+..
T Consensus 91 -----------------~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~ 141 (250)
T 3e6c_C 91 -----------------G-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYARQV 141 (250)
T ss_dssp -----------------S-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------C-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 56799999999999999999999999999999999999888887554433
No 49
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.41 E-value=1.1e-12 Score=118.44 Aligned_cols=90 Identities=14% Similarity=0.174 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCchhhhhHhhhhccCCCCchhHHHHHHHHHHHHHHhcccCCCccc
Q psy8545 12 LTLLMLSFTLVAHWLACLWFVIADYERNRYRQDWDLGWIHTLAERLKVNVSEISHRESYITALYFTCSSLTSVGFGNVSA 91 (547)
Q Consensus 12 l~kL~~~~ll~~H~~ACiw~~i~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~s~~~~Yi~SlYwai~TltTVGyGdi~p 91 (547)
+...++.++++++..|++++++..... + +....|..|+||++.|+|||||||+.|
T Consensus 8 ~~~~~~~~~~~~~~~a~~~~~~e~~~~---~----------------------~~~~~~~~a~yf~~~T~tTvGyGd~~P 62 (139)
T 3eff_K 8 AGAATVLLVIVLLAGSYLAVLAERGAP---G----------------------AQLITYPRALWWSVETATTVGYGDLYP 62 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCT---T----------------------CCCCCHHHHHHHHHHHHTTCCCSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC---C----------------------cccCCHHHHHHHHheeeecccCCCCcC
Confidence 444555566666777777777654321 0 011127789999999999999999999
Q ss_pred cCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHHH
Q psy8545 92 NTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMY 126 (547)
Q Consensus 92 ~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~~ 126 (547)
.|..+++++++++++|+.+++++++.++..+....
T Consensus 63 ~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~ 97 (139)
T 3eff_K 63 VTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE 97 (139)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998775543
No 50
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.40 E-value=2.3e-12 Score=125.70 Aligned_cols=120 Identities=16% Similarity=0.164 Sum_probs=99.6
Q ss_pred hccHHHHHHHHh--hccccccCCCcEEEccCCCCCcEEEEEceeEEEEE---cC--eEEEEcCCCCeechhhhhhhccCC
Q psy8545 203 AATQGCLKLLSL--HIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---NG--MVVAILGKGDLVGCDISMWLSEKN 275 (547)
Q Consensus 203 ~ls~~~l~~L~~--~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~~--~vl~~l~~Gd~FG~eisl~~~~p~ 275 (547)
+++++.+..+.. .++.+.|++|++|+++||+++++|||.+|.|+++. +| .++..+ +|++|| +.+++.+.+.
T Consensus 3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~G-e~~~~~~~~~ 80 (238)
T 2bgc_A 3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVI-MSGFIDTETS 80 (238)
T ss_dssp -CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEE-ESBCTTTCCB
T ss_pred CCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEec-chhhhcCCCc
Confidence 678899998874 58999999999999999999999999999999985 22 467888 999999 7777654320
Q ss_pred CCCCCCCCCCCCCCCccceeEEEEEe-eeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Q psy8545 276 GGSAVGPGAGTGVDPIVKSSCDVKAL-TYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIR 341 (547)
Q Consensus 276 ~~s~~~~~~~~~~~~~~~~~~tv~Al-t~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr 341 (547)
.+..++.|+ ++|+++.|++++|.+++..+|++...+.+.+.+++.....
T Consensus 81 -----------------~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~ 130 (238)
T 2bgc_A 81 -----------------VGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLA 130 (238)
T ss_dssp -----------------SCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 014577777 5999999999999999999999999999988888765433
No 51
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.35 E-value=1.2e-12 Score=147.74 Aligned_cols=133 Identities=20% Similarity=0.252 Sum_probs=110.7
Q ss_pred hhhccCCccccccccccccccccccchhhhccHHHHHHHHhhcc-ccccCCCcEEEccCCCCCcEEEEEceeEEEEEcC-
Q psy8545 174 ETLKEFPEELRGDVSMHLHREILQLPIFEAATQGCLKLLSLHIR-NNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNG- 251 (547)
Q Consensus 174 ~iL~~Lp~~Lr~~i~~~l~~~ll~iplF~~ls~~~l~~L~~~l~-~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~- 251 (547)
.++..-|..-..+-...+...+.++++|.+++++.+..++..+. .+.|++|++|+++||.++++|||++|.|+++..+
T Consensus 13 ~iL~k~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~g~ 92 (694)
T 3cf6_E 13 MILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK 92 (694)
T ss_dssp HHHHSCGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEETTT
T ss_pred HHHcCChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEeCC
Confidence 34444444333233333444566899999999999999999998 6899999999999999999999999999999865
Q ss_pred eEEEEcCCCCeechhhhhhhccCCCCCCCCCCCCCCCCCccceeEEEEEee-eeEEEEEeHHHHHHHHHhCHHHHH
Q psy8545 252 MVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALT-YCDLKSVNVVGLVEVLRLYPEYQQ 326 (547)
Q Consensus 252 ~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt-~c~ll~I~~~~f~~ll~~~P~~~~ 326 (547)
.++..+++|++|| +.+++.+.+ +.++|+|++ +|+++.|++++|.++++.+|.+..
T Consensus 93 ~il~~l~~Gd~fG-e~al~~~~~-------------------~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~~ 148 (694)
T 3cf6_E 93 GVVCTLHEGDDFG-KLALVNDAP-------------------RAASIVLREDNCHFLRVDKEDFNRILRDVEANTV 148 (694)
T ss_dssp EEEEEEETTCEEC-HHHHHHTCB-------------------CSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCCE
T ss_pred EEEEEeCCCCEee-hHHHhCCCC-------------------ceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHHH
Confidence 5899999999999 888887655 677999999 599999999999999999998743
No 52
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.34 E-value=4.1e-12 Score=112.19 Aligned_cols=58 Identities=19% Similarity=0.374 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHh
Q psy8545 70 YITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYS 127 (547)
Q Consensus 70 Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~~~ 127 (547)
|..|+||++.|+|||||||+.|.|..+++++++++++|..+++++++.+++.+.+...
T Consensus 62 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 62 YPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999998877543
No 53
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.33 E-value=4e-12 Score=116.85 Aligned_cols=61 Identities=25% Similarity=0.398 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHhhH
Q psy8545 69 SYITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRR 129 (547)
Q Consensus 69 ~Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~~~~~ 129 (547)
.|..|+||++.|+|||||||+.|.|..+++++++++++|+++++++++.+++.+.+....+
T Consensus 84 s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~ 144 (155)
T 2a9h_A 84 SYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQER 144 (155)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC--
T ss_pred cccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888999999999999999999999999999999999999999999999999888765443
No 54
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.33 E-value=3e-12 Score=150.36 Aligned_cols=117 Identities=17% Similarity=0.253 Sum_probs=104.0
Q ss_pred cccccccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEE-------cCeEEEEcCCCCe
Q psy8545 190 HLHREILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ-------NGMVVAILGKGDL 262 (547)
Q Consensus 190 ~l~~~ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~-------~~~vl~~l~~Gd~ 262 (547)
.++..|.++++|+++++..+.+|+.+++...|++|++||++||.++++|+|++|.|.|+. ++.++..+++|+.
T Consensus 39 ~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~~l~~G~s 118 (999)
T 4f7z_A 39 IIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTA 118 (999)
T ss_dssp HHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEEEEETTCE
T ss_pred HHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEEEecCCcc
Confidence 345556679999999999999999999999999999999999999999999999999985 2358899999999
Q ss_pred echhhhhhhccCCCCCCCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHH
Q psy8545 263 VGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQE 327 (547)
Q Consensus 263 FG~eisl~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~ 327 (547)
|| | +++.+.| |+++|+|.++|+++.|++++|..++++||+....
T Consensus 119 FG-E-all~n~p-------------------RtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~~~ 162 (999)
T 4f7z_A 119 FG-E-SILDNTP-------------------RHATIVTRESSELLRIEQEDFKALWEKYRQYMAG 162 (999)
T ss_dssp EC-G-GGGGTCC-------------------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred hh-h-hhccCCC-------------------cceEEEeccceEEEEEEHHHHHHHHHhChHHHHH
Confidence 99 6 5665544 8899999999999999999999999999886543
No 55
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.30 E-value=6.1e-12 Score=147.72 Aligned_cols=124 Identities=21% Similarity=0.268 Sum_probs=103.4
Q ss_pred hccCCccccccccccccccccccchhhhccHHHHHHHHhhcccc-ccCCCcEEEccCCCCCcEEEEEceeEEEEEcC-eE
Q psy8545 176 LKEFPEELRGDVSMHLHREILQLPIFEAATQGCLKLLSLHIRNN-FCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNG-MV 253 (547)
Q Consensus 176 L~~Lp~~Lr~~i~~~l~~~ll~iplF~~ls~~~l~~L~~~l~~~-~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~-~v 253 (547)
+...|.+-..+....+...+.++|+|.+++...++.|+..+... ++..|++|+++||.++.+|||++|.|+|+.++ ..
T Consensus 320 l~k~~~~rt~ed~e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~ 399 (999)
T 4f7z_A 320 LRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGV 399 (999)
T ss_dssp HTSCGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTEE
T ss_pred hcCCcccccHHHHHHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcc
Confidence 33333333333334455567789999999999999999998854 56889999999999999999999999999754 68
Q ss_pred EEEcCCCCeechhhhhhhccCCCCCCCCCCCCCCCCCccceeEEEEEeee-eEEEEEeHHHHHHHHH
Q psy8545 254 VAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTY-CDLKSVNVVGLVEVLR 319 (547)
Q Consensus 254 l~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~Alt~-c~ll~I~~~~f~~ll~ 319 (547)
+..+++||+|| |.+++.+.| |.++|+|.++ |++++|++++|.+++.
T Consensus 400 v~~L~~Gd~FG-ElALL~~~P-------------------R~aTV~a~~d~c~fl~i~k~df~~il~ 446 (999)
T 4f7z_A 400 VCTLHEGDDFG-KLALVNDAP-------------------RAASIVLREDNCHFLRVDKEDGNRILR 446 (999)
T ss_dssp EEEEETTCEEC-GGGGTCSCB-------------------CSSEEEESSSSEEEEEEEHHHHHHHHH
T ss_pred eEEecCCCccc-chhhccCCC-------------------eeEEEEEecCceEEEEeeHHHHHHHHh
Confidence 89999999999 899998776 8889999985 9999999999998875
No 56
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.25 E-value=1.7e-11 Score=119.19 Aligned_cols=88 Identities=24% Similarity=0.384 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCchhhhhHhhhhccCCCCchhHHHHHHHHHHHHHHhcccCCCccc
Q psy8545 12 LTLLMLSFTLVAHWLACLWFVIADYERNRYRQDWDLGWIHTLAERLKVNVSEISHRESYITALYFTCSSLTSVGFGNVSA 91 (547)
Q Consensus 12 l~kL~~~~ll~~H~~ACiw~~i~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~s~~~~Yi~SlYwai~TltTVGyGdi~p 91 (547)
+..+++.+++++|+.||+++++.... .+ +....|..|+||++.|+|||||||+.|
T Consensus 133 l~~~~~~~~~~~~~~~~~~~~~e~~~---~~----------------------~~~~~~~~s~y~~~~t~tTvGyGdi~P 187 (223)
T 1orq_C 133 FYHLFGAVMLTVLYGAFAIYIVEYPD---PN----------------------SSIKSVFDALWWAVVTATTVGYGDVVP 187 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSS---TT----------------------CSCCSHHHHHHHHHHHHTTCCCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC---cC----------------------CCcCcchhHHHhHHhHHhccCCCCCCC
Confidence 45567777888999999998874311 00 112348899999999999999999999
Q ss_pred cCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHH
Q psy8545 92 NTSAEKIFSICTMLIGALMHAVVFGNVTAIIQR 124 (547)
Q Consensus 92 ~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~ 124 (547)
.|..++++++++|++|+.++++++|.+++.+++
T Consensus 188 ~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 188 ATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998865
No 57
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.23 E-value=2.8e-11 Score=114.20 Aligned_cols=97 Identities=16% Similarity=0.241 Sum_probs=84.2
Q ss_pred cccCCCcEEEccCCCCCcEEEEEceeEEEEE---cC--eEEEEcCCCCeechhhhhhhccCCCCCCCCCCCCCCCCCccc
Q psy8545 219 NFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---NG--MVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVK 293 (547)
Q Consensus 219 ~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~~--~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~~~~~~~~~~ 293 (547)
+.|++|++|+++|++++++|||.+|.|+++. ++ .++..+++|++|| + +++.+.+
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G-e-~~~~~~~------------------- 60 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFG-E-EALEGKA------------------- 60 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEEC-G-GGGTCSB-------------------
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEec-h-hhhCCCC-------------------
Confidence 5689999999999999999999999999985 23 4789999999999 7 8776554
Q ss_pred eeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhh
Q psy8545 294 SSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIRE 342 (547)
Q Consensus 294 ~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr~ 342 (547)
+.++++|+++|+++.|++++|. |++...+.+.+.+++......
T Consensus 61 ~~~~~~A~~~~~v~~i~~~~~~------p~~~~~~~~~l~~~l~~~~~~ 103 (195)
T 3b02_A 61 YRYTAEAMTEAVVQGLEPRAMD------HEALHRVARNLARQMRRVQAY 103 (195)
T ss_dssp CSSEEEESSSEEEEEECGGGCC------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEECCcEEEEEEcHHHcC------HHHHHHHHHHHHHHHHHHHHH
Confidence 6779999999999999999998 999999998888887655443
No 58
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.23 E-value=3.9e-12 Score=108.98 Aligned_cols=90 Identities=16% Similarity=0.073 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCchhhhhHhhhhccCCCCchhHHHHHHHHHHHHHHhcccCCCccc
Q psy8545 12 LTLLMLSFTLVAHWLACLWFVIADYERNRYRQDWDLGWIHTLAERLKVNVSEISHRESYITALYFTCSSLTSVGFGNVSA 91 (547)
Q Consensus 12 l~kL~~~~ll~~H~~ACiw~~i~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~s~~~~Yi~SlYwai~TltTVGyGdi~p 91 (547)
+...++.+++++.+.|++++++..... ++ ....|..|+||++.|+|||||||+.|
T Consensus 8 ~l~~~~~~~~~~~~~a~~~~~~E~~~~----~~---------------------~~~~~~~a~y~~~~T~tTvGyGDi~P 62 (103)
T 2k1e_A 8 AQKAEEELQKVLEEASKKAVEAERGAP----GA---------------------ALISYPDAIWWSVETATTVGYGDRYP 62 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTST----TC---------------------CCCCGGGTTTTTTGGGGCCSCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCC----Cc---------------------ccccHHHHHHHHHHHHhcccCCCCCC
Confidence 333455566667778888888765321 00 11125669999999999999999999
Q ss_pred cCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHHH
Q psy8545 92 NTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMY 126 (547)
Q Consensus 92 ~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~~ 126 (547)
.|..+++++++++++|..+++++++.+.+.+.+..
T Consensus 63 ~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~ 97 (103)
T 2k1e_A 63 VTEEGRKVAEQVMKAGIEVFALVTAALATDFVRRE 97 (103)
T ss_dssp CSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998876643
No 59
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.19 E-value=9.4e-11 Score=99.20 Aligned_cols=55 Identities=35% Similarity=0.512 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHH
Q psy8545 70 YITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQR 124 (547)
Q Consensus 70 Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~ 124 (547)
|..|+||++.|+|||||||+.|.|..+++++++.+++|..+++++++.++..++.
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6679999999999999999999999999999999999999999999999988765
No 60
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.18 E-value=1.1e-10 Score=95.67 Aligned_cols=53 Identities=23% Similarity=0.476 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHH
Q psy8545 70 YITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAII 122 (547)
Q Consensus 70 Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii 122 (547)
|..|+||++.|+|||||||+.|.|..+++++++.+++|..++++.++.+++.+
T Consensus 29 ~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56699999999999999999999999999999999999999999999998764
No 61
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.17 E-value=7.5e-11 Score=102.82 Aligned_cols=57 Identities=35% Similarity=0.435 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHHH
Q psy8545 70 YITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMY 126 (547)
Q Consensus 70 Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~~ 126 (547)
|..|+||++.|+|||||||+.|.|..+++++++.+++|..++++.++.+.+.+...+
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~ 106 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 106 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667999999999999999999999999999999999999999999999998875543
No 62
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.12 E-value=1.1e-10 Score=110.58 Aligned_cols=101 Identities=15% Similarity=0.242 Sum_probs=82.9
Q ss_pred HhhccccccCCCcEEEccCCCC--CcEEEEEceeEEEEE---cC--eEEEEcCCCCeechhhhhhhccCCCCCCCCCCCC
Q psy8545 213 SLHIRNNFCAPGEYLIHKGDHL--SSIYYLCNGSMEVVQ---NG--MVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAG 285 (547)
Q Consensus 213 ~~~l~~~~y~~ge~I~~qGd~~--~~lYfI~~G~V~v~~---~~--~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~~ 285 (547)
..+++.+.|++|++|+++||++ +++|||++|.|+++. +| .++..+++|++|| + +++.+.+
T Consensus 2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G-~-~~l~~~~----------- 68 (202)
T 2zcw_A 2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFG-E-EALFGQE----------- 68 (202)
T ss_dssp ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEEC-T-HHHHTCC-----------
T ss_pred CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEee-e-hhcCCCC-----------
Confidence 4567888999999999999999 999999999999985 23 4789999999999 6 6666544
Q ss_pred CCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Q psy8545 286 TGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIR 341 (547)
Q Consensus 286 ~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr 341 (547)
+.++++|+++|+++.| +++|. |++...+.+.+.+++.....
T Consensus 69 --------~~~~~~A~~~~~v~~i-~~~~~------p~~~~~~~~~l~~~l~~~~~ 109 (202)
T 2zcw_A 69 --------RIYFAEAATDVRLEPL-PENPD------PELLKDLAQHLSQGLAEAYR 109 (202)
T ss_dssp --------BCSEEEESSCEEEEEC-CSSCC------HHHHHHHHHHHHHHHHHHHH
T ss_pred --------cceEEEEcccEEEEEE-hHhcC------HHHHHHHHHHHHHHHHHHHH
Confidence 6679999999999999 98886 99998888888777664433
No 63
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=98.99 E-value=9.4e-10 Score=119.87 Aligned_cols=91 Identities=21% Similarity=0.285 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCchhhhhHhhhhccCCCCchhHHHHHHHHHHHHHHhcccCCCccc
Q psy8545 12 LTLLMLSFTLVAHWLACLWFVIADYERNRYRQDWDLGWIHTLAERLKVNVSEISHRESYITALYFTCSSLTSVGFGNVSA 91 (547)
Q Consensus 12 l~kL~~~~ll~~H~~ACiw~~i~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~s~~~~Yi~SlYwai~TltTVGyGdi~p 91 (547)
+..++++++++++++||++|++.... ..+++..|..|+||++.|||||||||+.|
T Consensus 343 l~~ll~~l~i~~~if~~~~~~~e~~~-------------------------~~~~F~s~~~a~y~~~vT~TTvGYGDi~P 397 (514)
T 2r9r_B 343 LGLLIFFLFIGVILFSSAVYFAEADE-------------------------RDSQFPSIPDAFWWAVVSMTTVGYGDMVP 397 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC-------------------------TTCSCSSHHHHHHHHHHHHTTCCCSSSCC
T ss_pred HHHHHHHHHHHHHHHHhhhheeeccC-------------------------CCccccchhhhhheeeeEEEecccCCCCC
Confidence 34445555666778888777653210 01223347889999999999999999999
Q ss_pred cCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHh
Q psy8545 92 NTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYS 127 (547)
Q Consensus 92 ~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~~~ 127 (547)
.|..+++|+++++++|+++++++++.+.+.++....
T Consensus 398 ~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~ 433 (514)
T 2r9r_B 398 TTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 433 (514)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988777654
No 64
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.94 E-value=1.7e-09 Score=109.72 Aligned_cols=86 Identities=17% Similarity=0.302 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCchhhhhHhhhhccCCCCchhHHHHHHHHHHHHHHhcccCCCccccC
Q psy8545 14 LLMLSFTLVAHWLACLWFVIADYERNRYRQDWDLGWIHTLAERLKVNVSEISHRESYITALYFTCSSLTSVGFGNVSANT 93 (547)
Q Consensus 14 kL~~~~ll~~H~~ACiw~~i~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~s~~~~Yi~SlYwai~TltTVGyGdi~p~t 93 (547)
.+++.++++..++|++|++.+.. .++ .....|..|+||++.|+|||||||+.|.+
T Consensus 52 ~~~~~~~~~~l~fa~ly~~~~~~----~~~---------------------~~~~s~~~a~yfs~vT~tTvGYGDi~P~t 106 (301)
T 1xl4_A 52 LITGLYLVTNALFALAYLACGDV----IEN---------------------ARPGSFTDAFFFSVQTMATIGYGKLIPIG 106 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSC----STT---------------------SCTTCHHHHHHHHHHHHTTCCCSSSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHhhccc----cCC---------------------CCcCCHHHHHHHhhhheeccCCCCCcCCC
Confidence 34444556668889997766421 000 01123777999999999999999999999
Q ss_pred cchhHHHHHHHHHhhhHHHHhhhhHHHHHHH
Q psy8545 94 SAEKIFSICTMLIGALMHAVVFGNVTAIIQR 124 (547)
Q Consensus 94 ~~E~if~i~~mi~G~l~~a~iig~i~~ii~~ 124 (547)
..+++++++.+++|++++|+++|.+.+.+.+
T Consensus 107 ~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 107 PLANTLVTLEALCGMLGLAVAASLIYARFTR 137 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988877654
No 65
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.93 E-value=5.7e-11 Score=110.50 Aligned_cols=61 Identities=18% Similarity=0.359 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHhhH
Q psy8545 69 SYITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRR 129 (547)
Q Consensus 69 ~Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~~~~~ 129 (547)
.|..|+||+++|+|||||||+.|.|..+++++++++++|+++++++++.+++.+......+
T Consensus 67 ~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~ 127 (166)
T 3pjs_K 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQ 127 (166)
T ss_dssp STTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHH
T ss_pred CHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666999999999999999999999999999999999999999999999998877554443
No 66
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.86 E-value=1.1e-09 Score=112.46 Aligned_cols=56 Identities=23% Similarity=0.434 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHH
Q psy8545 70 YITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRM 125 (547)
Q Consensus 70 Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~ 125 (547)
|..|+||++.|+|||||||+.|.+..+++++++.+++|++++++++|.+.+.+.+.
T Consensus 97 ~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~ 152 (333)
T 1p7b_A 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP 152 (333)
T ss_dssp THHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67799999999999999999999999999999999999999999999998877653
No 67
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.79 E-value=1.6e-08 Score=103.44 Aligned_cols=57 Identities=18% Similarity=0.361 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHH
Q psy8545 69 SYITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRM 125 (547)
Q Consensus 69 ~Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~ 125 (547)
.|..|+||++.|+|||||||++|.+..+++++++.+++|++++|+++|.+.+.+.+.
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~ 134 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP 134 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377899999999999999999999999999999999999999999999999877653
No 68
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.74 E-value=3.5e-08 Score=108.66 Aligned_cols=85 Identities=15% Similarity=0.382 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-ccccccCCCCCCchhhhhHhhhhccCCCCchhHHHHHHHHHHHHHHhcccCCCc
Q psy8545 11 ILTLLMLSFTLVAHWLACLWFVIAD-YERNRYRQDWDLGWIHTLAERLKVNVSEISHRESYITALYFTCSSLTSVGFGNV 89 (547)
Q Consensus 11 ~l~kL~~~~ll~~H~~ACiw~~i~~-~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~s~~~~Yi~SlYwai~TltTVGyGdi 89 (547)
.+..+++.+++++++.+|+|+++.. .+. ..| + |+.|+||++.|+|||||||+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~~~--~---------------------~~~~~y~~~~t~tTvGygd~ 71 (565)
T 4gx0_A 19 VLLLYCAFLLVMLLAYASIFRYLMWHLEG----RAY--S---------------------FMAGIYWTITVMTTLGFGDI 71 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCC--C---------------------HHHHHHHHHHHHTTCCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCC--c---------------------hhhhhheeeeeeeeecCCCc
Confidence 3566677777788888888887764 221 112 2 55699999999999999999
Q ss_pred cccCcchhHHHHHHHHHhhhHHHHhhhh-HHHHH
Q psy8545 90 SANTSAEKIFSICTMLIGALMHAVVFGN-VTAII 122 (547)
Q Consensus 90 ~p~t~~E~if~i~~mi~G~l~~a~iig~-i~~ii 122 (547)
.|.|..+++|+++++++|++++++.++. +...+
T Consensus 72 ~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 72 TFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987 55544
No 69
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.70 E-value=2.9e-08 Score=100.59 Aligned_cols=57 Identities=25% Similarity=0.515 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHH
Q psy8545 69 SYITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRM 125 (547)
Q Consensus 69 ~Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~ 125 (547)
.|..|+||+++|+|||||||+.|.|..+++|+++.+++|+.+++++++.++..+...
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 599999999999999999999999999999999999999999999999999887654
No 70
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.65 E-value=4.7e-08 Score=100.29 Aligned_cols=100 Identities=16% Similarity=0.405 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCchhhhhHhhhhccCCCCchhHHHHHHHHHHHHHHhcccCCCcccc-
Q psy8545 14 LLMLSFTLVAHWLACLWFVIADYERNRYRQDWDLGWIHTLAERLKVNVSEISHRESYITALYFTCSSLTSVGFGNVSAN- 92 (547)
Q Consensus 14 kL~~~~ll~~H~~ACiw~~i~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~s~~~~Yi~SlYwai~TltTVGyGdi~p~- 92 (547)
.+++.+++..-++|++||+++....+.... -+.+|.+ .......+..+|||++.|+|||||||+.|.
T Consensus 48 if~~~y~~swl~Fa~ly~~ia~~~Gdl~~~-~~~~~~~-----------Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~ 115 (340)
T 3sya_A 48 IFVMVYTVTWLFFGMIWWLIAYIRGDMDHI-EDPSWTP-----------CVTNLNGFVSAFLFSIETETTIGYGYRVITD 115 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTCS-SCSSCCC-----------SBSCCCSTTHHHHHHHHHHSCCCCSSSCBCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccc-ccccccc-----------hhccccCHHHHHhhhheeeeeecCCCccCcC
Confidence 344455556667899999988644321100 0011211 011123366799999999999999999997
Q ss_pred -CcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHH
Q psy8545 93 -TSAEKIFSICTMLIGALMHAVVFGNVTAIIQRM 125 (547)
Q Consensus 93 -t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~ 125 (547)
+...++++++.+++|.++.|+++|.+..-+.+-
T Consensus 116 ~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp 149 (340)
T 3sya_A 116 KCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQP 149 (340)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 567889999999999999999999888766553
No 71
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.63 E-value=7.6e-08 Score=98.87 Aligned_cols=100 Identities=15% Similarity=0.323 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCchhhhhHhhhhccCCCCchhHHHHHHHHHHHHHHhcccCCCcccc-
Q psy8545 14 LLMLSFTLVAHWLACLWFVIADYERNRYRQDWDLGWIHTLAERLKVNVSEISHRESYITALYFTCSSLTSVGFGNVSAN- 92 (547)
Q Consensus 14 kL~~~~ll~~H~~ACiw~~i~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~s~~~~Yi~SlYwai~TltTVGyGdi~p~- 92 (547)
.+++.+++..=++|.+|++++..+..-.......+|.+ .......+..+|||++.|+|||||||+.|.
T Consensus 50 ~f~~~y~~swl~Fally~~ia~~~gdl~~~~~~~~~~~-----------Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~ 118 (343)
T 3spc_A 50 LFSLAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKP-----------CVLQVNGFVAAFLFSIETQTTIGYGFRCVTE 118 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTGGGCTTCCSSCCC-----------SEETCCSHHHHHHHHHHHHSCCCCSSSEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccc-----------cccccCCHHHHhheeeeeeEeecCCCccCCC
Confidence 33445556666788899988765432111100112211 111234478899999999999999999874
Q ss_pred -CcchhHHHHHHHHHhhhHHHHhhhhHHHHHHH
Q psy8545 93 -TSAEKIFSICTMLIGALMHAVVFGNVTAIIQR 124 (547)
Q Consensus 93 -t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~ 124 (547)
+...++++++.+++|.++.|+++|.+..-+.+
T Consensus 119 ~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 119 ECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78889999999999999999999988776655
No 72
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.61 E-value=5.5e-08 Score=98.62 Aligned_cols=58 Identities=24% Similarity=0.410 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhcccCCCccccCcchh------HHHHHHHHHhhhHHHHhhhhHHHHHHHHHh
Q psy8545 70 YITALYFTCSSLTSVGFGNVSANTSAEK------IFSICTMLIGALMHAVVFGNVTAIIQRMYS 127 (547)
Q Consensus 70 Yi~SlYwai~TltTVGyGdi~p~t~~E~------if~i~~mi~G~l~~a~iig~i~~ii~~~~~ 127 (547)
|+.|+||++.|+|||||||+.|.+..++ +++++++++|..+++++++.++..+..+..
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~ 288 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSR 288 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6679999999999999999999998887 499999999999999999998887766543
No 73
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.52 E-value=1.8e-07 Score=93.48 Aligned_cols=55 Identities=24% Similarity=0.497 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcccCCCccccCcch-------hHHHHHHHHHhhhHHHHhhhhHHHHHHH
Q psy8545 70 YITALYFTCSSLTSVGFGNVSANTSAE-------KIFSICTMLIGALMHAVVFGNVTAIIQR 124 (547)
Q Consensus 70 Yi~SlYwai~TltTVGyGdi~p~t~~E-------~if~i~~mi~G~l~~a~iig~i~~ii~~ 124 (547)
|+.|+||++.|+|||||||+.|.+... ++++++++++|..+++++++.+++++..
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~ 263 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHEL 263 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566999999999999999999999854 9999999999999999999999887655
No 74
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.39 E-value=3.7e-07 Score=91.25 Aligned_cols=56 Identities=23% Similarity=0.444 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHH
Q psy8545 69 SYITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQR 124 (547)
Q Consensus 69 ~Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~ 124 (547)
.|..|+||+++|+|||||||+.|.|..+++|+++.+++|+.+++++++.+...+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999998765433
No 75
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.28 E-value=1e-07 Score=98.01 Aligned_cols=56 Identities=21% Similarity=0.454 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHH
Q psy8545 70 YITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRM 125 (547)
Q Consensus 70 Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~ 125 (547)
|..|+||++.|+|||||||+.|.|..+++|+++++++|.++++++++.++..+...
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33499999999999999999999999999999999999999999999998877653
No 76
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=97.47 E-value=0.00016 Score=72.37 Aligned_cols=60 Identities=8% Similarity=0.067 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHhcccCC-Ccc-ccCcch----hHHHHHHHHHhhhHHHHhhhhHHHHHHHHH
Q psy8545 67 RESYITALYFTCSSLTSVGFG-NVS-ANTSAE----KIFSICTMLIGALMHAVVFGNVTAIIQRMY 126 (547)
Q Consensus 67 ~~~Yi~SlYwai~TltTVGyG-di~-p~t~~E----~if~i~~mi~G~l~~a~iig~i~~ii~~~~ 126 (547)
+..+..|+||++.++||+||| |+. |.+... ..|.+++++.|+++.+.++|.+.+-+....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778999999999999999 985 777544 678888999999999999999888776543
No 77
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=75.02 E-value=10 Score=35.65 Aligned_cols=55 Identities=11% Similarity=0.036 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHhcccCCCcccc----CcchhHHHHHHHHHh-hhHHHHhhhhHHHH
Q psy8545 67 RESYITALYFTCSSLTSVGFGNVSAN----TSAEKIFSICTMLIG-ALMHAVVFGNVTAI 121 (547)
Q Consensus 67 ~~~Yi~SlYwai~TltTVGyGdi~p~----t~~E~if~i~~mi~G-~l~~a~iig~i~~i 121 (547)
++....|++|.+.++|+.|++|+... +..-.++.+.++++| .++...+++.+.+-
T Consensus 163 F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~ 222 (229)
T 4dxw_A 163 WGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDV 222 (229)
T ss_dssp TSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34477799999999999999987322 222333433333333 44455555554443
No 78
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=74.25 E-value=2 Score=48.31 Aligned_cols=56 Identities=13% Similarity=0.238 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHH
Q psy8545 68 ESYITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQR 124 (547)
Q Consensus 68 ~~Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~ 124 (547)
.....+++|++.+++..| ++..|.+...+++.+++++++.++.+...+++++++..
T Consensus 562 ~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 562 FGIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345678999999998888 68899999999999999999999999999999988764
No 79
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=68.57 E-value=17 Score=30.07 Aligned_cols=47 Identities=19% Similarity=0.146 Sum_probs=36.5
Q ss_pred cccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 217 RNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 217 ~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
....++||..+-.---....+++|++|++++..++.. ..+++||.+=
T Consensus 39 ~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~-~~l~~Gd~i~ 85 (114)
T 3fjs_A 39 MRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVDGAQ-RRLHQGDLLY 85 (114)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEESCEEEEETTEE-EEECTTEEEE
T ss_pred EEEEECCCCccCceeCCCcEEEEEEECEEEEEECCEE-EEECCCCEEE
Confidence 3445688887765555567999999999999987764 5789999885
No 80
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=67.73 E-value=4.8 Score=29.29 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=21.0
Q ss_pred hhHHHhhhhccchhHhHHHhhHHHHHHH
Q psy8545 413 SSVDRLDTQVTSLHHHVATLSQEVRNAI 440 (547)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (547)
.+++.|.++|.+|...|.+|+.||..+-
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~ 31 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAAR 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888888888765443
No 81
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=67.05 E-value=13 Score=35.05 Aligned_cols=69 Identities=16% Similarity=0.160 Sum_probs=53.2
Q ss_pred cccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeechhhhhhhccCCCCCCCCCCCCCCCCCccceeE
Q psy8545 217 RNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSC 296 (547)
Q Consensus 217 ~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~~~~~~~~~~~~~ 296 (547)
....+.||+.+-..--+.+.+++|++|++++..++.. ..+++||++=. |. ....
T Consensus 40 ~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~~~~-~~l~~Gd~~~~--------p~-----------------~~~H 93 (227)
T 3rns_A 40 SLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIENNK-KTISNGDFLEI--------TA-----------------NHNY 93 (227)
T ss_dssp EEEEECTTCEEEECSCSSCEEEEEEESEEEEEESSCE-EEEETTEEEEE--------CS-----------------SCCE
T ss_pred EEEEECCCCccCccccCCCEEEEEEeCEEEEEECCEE-EEECCCCEEEE--------CC-----------------CCCE
Confidence 4456789999977777889999999999999987765 57899998851 10 0345
Q ss_pred EEEEeeeeEEEEEeH
Q psy8545 297 DVKALTYCDLKSVNV 311 (547)
Q Consensus 297 tv~Alt~c~ll~I~~ 311 (547)
.++|.++|.++.|..
T Consensus 94 ~~~a~~~~~~l~i~~ 108 (227)
T 3rns_A 94 SIEARDNLKLIEIGE 108 (227)
T ss_dssp EEEESSSEEEEEEEE
T ss_pred EEEECCCcEEEEEEe
Confidence 788999999998743
No 82
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=60.66 E-value=10 Score=31.18 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=33.7
Q ss_pred ccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 218 NNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 218 ~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
...+.||+.-.. -....+++|++|++.+..++.....+++||.+-
T Consensus 35 ~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~~g~~~~l~~GD~i~ 79 (101)
T 1o5u_A 35 IWEKEVSEFDWY--YDTNETCYILEGKVEVTTEDGKKYVIEKGDLVT 79 (101)
T ss_dssp EEEECSEEEEEE--CSSCEEEEEEEEEEEEEETTCCEEEEETTCEEE
T ss_pred EEEeCCCccccc--CCceEEEEEEeCEEEEEECCCCEEEECCCCEEE
Confidence 445677776554 346799999999999988733446799999885
No 83
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=59.04 E-value=25 Score=28.64 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=30.5
Q ss_pred cCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 221 CAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 221 y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
+.+|..+-........+++|++|.+.+..++. ...+++||++=
T Consensus 45 ~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~~~-~~~l~~Gd~i~ 87 (114)
T 2ozj_A 45 FADGESVSEEEYFGDTLYLILQGEAVITFDDQ-KIDLVPEDVLM 87 (114)
T ss_dssp EETTSSCCCBCCSSCEEEEEEEEEEEEEETTE-EEEECTTCEEE
T ss_pred ECCCCccccEECCCCeEEEEEeCEEEEEECCE-EEEecCCCEEE
Confidence 34554433333345789999999999988775 45789999885
No 84
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=57.46 E-value=7.2 Score=31.25 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=31.7
Q ss_pred cccCCCcEEEccCCCC-CcEEEEEceeEEEEEcCe-EEEEcCCCCeec
Q psy8545 219 NFCAPGEYLIHKGDHL-SSIYYLCNGSMEVVQNGM-VVAILGKGDLVG 264 (547)
Q Consensus 219 ~~y~~ge~I~~qGd~~-~~lYfI~~G~V~v~~~~~-vl~~l~~Gd~FG 264 (547)
..++||...-..--.. ..+++|++|.+++..++. ....+++||.+-
T Consensus 23 ~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~~~~l~~Gd~~~ 70 (97)
T 2fqp_A 23 WRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVTSQLTRGVSYT 70 (97)
T ss_dssp EEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEEEEEECTTCCEE
T ss_pred EEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCEEEEEcCCCEEE
Confidence 4456666542111223 359999999999988775 567899999885
No 85
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=56.76 E-value=6.8 Score=33.39 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=35.3
Q ss_pred cccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 219 NFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 219 ~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
-.+.||..-+... ..+++++|++|.+.+..++.....+++||.|-
T Consensus 47 We~tPG~~~~~~~-~~~E~~~iLeG~~~lt~ddG~~~~l~aGD~~~ 91 (116)
T 3es4_A 47 WMAEPGIYNYAGR-DLEETFVVVEGEALYSQADADPVKIGPGSIVS 91 (116)
T ss_dssp EEECSEEEEECCC-SEEEEEEEEECCEEEEETTCCCEEECTTEEEE
T ss_pred EecCCceeECeeC-CCcEEEEEEEeEEEEEeCCCeEEEECCCCEEE
Confidence 3467887766553 34589999999999998776667899999996
No 86
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=56.59 E-value=15 Score=30.99 Aligned_cols=45 Identities=22% Similarity=0.389 Sum_probs=34.3
Q ss_pred ccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 218 NNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 218 ~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
...+.||..+-.. ...+.+++|++|++++..++.. ..+++||++-
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~~g~~-~~l~~GD~v~ 88 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVSTDGET-VTAGPGEIVY 88 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEETTEE-EEECTTCEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEECCEE-EEECCCCEEE
Confidence 3446778765443 3678999999999999987654 5799999985
No 87
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=55.49 E-value=15 Score=30.52 Aligned_cols=48 Identities=10% Similarity=0.062 Sum_probs=35.5
Q ss_pred ccccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 216 IRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 216 l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
+....++||..+-.---....+++|++|.+++..++.. ..+++||++=
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~-~~l~~Gd~~~ 90 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIGEET-RVLRPGMAYT 90 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEETTEE-EEECTTEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEECCEE-EEeCCCCEEE
Confidence 34455678877644434457899999999999887754 5789999875
No 88
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=54.35 E-value=18 Score=29.48 Aligned_cols=47 Identities=9% Similarity=0.044 Sum_probs=34.3
Q ss_pred cccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 217 RNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 217 ~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
....+.||..+-.---....+++|++|.+.+..++.. ..+++||++=
T Consensus 43 ~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~~~~-~~l~~Gd~~~ 89 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEITIDQET-YRVAEGQTIV 89 (115)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEESEEEEEETTEE-EEEETTCEEE
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeCEEEEEECCEE-EEECCCCEEE
Confidence 3445677876643333356899999999999887754 5789999885
No 89
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=52.79 E-value=6.5 Score=33.67 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=32.5
Q ss_pred ccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 220 FCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 220 ~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
.+.||..-.+..+ .+.+++|++|++.+..++.....+++||.+-
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~~g~~~~l~~GD~~~ 98 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEGEARLVDPDGTVHAVKAGDAFI 98 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEEEEEEECTTCCEEEEETTCEEE
T ss_pred EECCCceeeEcCC-CcEEEEEEEEEEEEEECCCeEEEECCCCEEE
Confidence 3566766654332 3789999999999997444456799999986
No 90
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=52.00 E-value=20 Score=28.67 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=33.6
Q ss_pred ccccCCCcEEEcc--CCC-CCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 218 NNFCAPGEYLIHK--GDH-LSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 218 ~~~y~~ge~I~~q--Gd~-~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
...+.||..+-.. --. ...+++|++|.+++..++.. ..+++||++=
T Consensus 25 ~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~~~~-~~l~~Gd~~~ 73 (113)
T 2gu9_A 25 EMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDGHT-QALQAGSLIA 73 (113)
T ss_dssp EEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEETTEE-EEECTTEEEE
T ss_pred EEEECCCCccCCcccccCCCcEEEEEEeCEEEEEECCEE-EEeCCCCEEE
Confidence 3456788766443 233 56899999999999887754 5689999874
No 91
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=51.67 E-value=21 Score=29.01 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=33.8
Q ss_pred cccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 217 RNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 217 ~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
....++||..+-.---....+++|++|.+++..++. ...+++||++=
T Consensus 37 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~-~~~l~~Gd~~~ 83 (116)
T 2pfw_A 37 VKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNVDGV-IKVLTAGDSFF 83 (116)
T ss_dssp EEEEECTTEEEEEECCSSEEEEEEEEECEEEEETTE-EEEECTTCEEE
T ss_pred EEEEECCCCcCCcEECCcceEEEEEeeEEEEEECCE-EEEeCCCCEEE
Confidence 344567887653322335689999999999988765 45789999874
No 92
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=49.73 E-value=11 Score=31.33 Aligned_cols=47 Identities=23% Similarity=0.279 Sum_probs=32.7
Q ss_pred cccccCCCcEEEccCCC-CCcEEEEEceeEEEEE-cCeEEEEcCCCCeec
Q psy8545 217 RNNFCAPGEYLIHKGDH-LSSIYYLCNGSMEVVQ-NGMVVAILGKGDLVG 264 (547)
Q Consensus 217 ~~~~y~~ge~I~~qGd~-~~~lYfI~~G~V~v~~-~~~vl~~l~~Gd~FG 264 (547)
....++||..+-..--. ...+++|++|++++.. ++. ...+++||++=
T Consensus 42 ~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~~-~~~l~~Gd~~~ 90 (125)
T 3h8u_A 42 VVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGI-VTHLKAGDIAI 90 (125)
T ss_dssp EEEEECTTCEECCC-CTTCEEEEEEEECEEEEECSTTC-EEEEETTEEEE
T ss_pred EEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCCe-EEEeCCCCEEE
Confidence 34556788776443333 3678999999999987 444 45789999874
No 93
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=47.72 E-value=17 Score=31.36 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=31.9
Q ss_pred cccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 219 NFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 219 ~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
..+.||..-.+. ..+.+++|++|++++..++... .+++||.|-
T Consensus 62 ~~~~pG~~~~h~--~~~E~~~VLeG~~~l~~~g~~~-~l~~GD~i~ 104 (133)
T 2pyt_A 62 MQWDNAFFPWTL--NYDEIDMVLEGELHVRHEGETM-IAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEEEEC--SSEEEEEEEEEEEEEEETTEEE-EEETTCEEE
T ss_pred EEECCCCccccC--CCCEEEEEEECEEEEEECCEEE-EECCCcEEE
Confidence 346677432332 3679999999999999887654 799999986
No 94
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=46.06 E-value=31 Score=26.91 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=32.6
Q ss_pred ccccCCCcEEEccCCC-CCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 218 NNFCAPGEYLIHKGDH-LSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 218 ~~~y~~ge~I~~qGd~-~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
...++||..+-..--. ...+++|++|.+.+..++. ...+++||++=
T Consensus 32 ~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~~~-~~~l~~Gd~~~ 78 (105)
T 1v70_A 32 LYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEE-EALLAPGMAAF 78 (105)
T ss_dssp EEEECTTCEEEEECCSSCEEEEEEEESCEEEEETTE-EEEECTTCEEE
T ss_pred EEEECCCCcCCccCCCCCcEEEEEEeCEEEEEECCE-EEEeCCCCEEE
Confidence 3456777776433223 3579999999999987765 45789999874
No 95
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=43.48 E-value=25 Score=31.34 Aligned_cols=46 Identities=24% Similarity=0.217 Sum_probs=33.0
Q ss_pred ccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 218 NNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 218 ~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
...+.||..+-..--....+++|++|.+.+..++. ...+++||++=
T Consensus 60 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~~~-~~~l~~Gd~i~ 105 (167)
T 3ibm_A 60 YFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLDDR-VEPLTPLDCVY 105 (167)
T ss_dssp EEEECTTCBCCCBBCSSCEEEEEEESEEEEEETTE-EEEECTTCEEE
T ss_pred EEEECCCCCCCCccCCCcEEEEEEeCEEEEEECCE-EEEECCCCEEE
Confidence 33456666543333346789999999999988776 45789999885
No 96
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=42.46 E-value=13 Score=30.66 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=25.7
Q ss_pred CCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 233 HLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 233 ~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
....+++|++|.+.+..++.....+++||++=
T Consensus 46 ~~~e~~~Vl~G~~~~~i~~~~~~~l~~Gd~i~ 77 (117)
T 2b8m_A 46 NSYVHLIIIKGEMTLTLEDQEPHNYKEGNIVY 77 (117)
T ss_dssp SSCEEEEEEESEEEEEETTSCCEEEETTCEEE
T ss_pred CCcEEEEEEeCEEEEEECCEEEEEeCCCCEEE
Confidence 34678999999999988776544789999874
No 97
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=42.32 E-value=19 Score=34.12 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=32.5
Q ss_pred cCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 221 CAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 221 y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
++||..+=.---+.+++|+|++|.++...++.....+++||.+=
T Consensus 139 l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g~~~~l~pGd~v~ 182 (217)
T 4b29_A 139 WGPGLDYGWHEHLPEELYSVVSGRALFHLRNAPDLMLEPGQTRF 182 (217)
T ss_dssp ECSSCEEEEEECSSEEEEEEEEECEEEEETTSCCEEECTTCEEE
T ss_pred ECCCCcCCCCCCCCceEEEEEeCCEEEEECCCCEEecCCCCEEE
Confidence 45555543333557899999999999988765666789999885
No 98
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=41.73 E-value=14 Score=26.77 Aligned_cols=29 Identities=7% Similarity=0.145 Sum_probs=24.5
Q ss_pred chhhHHHhhhhccchhHhHHHhhHHHHHH
Q psy8545 411 KKSSVDRLDTQVTSLHHHVATLSQEVRNA 439 (547)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (547)
...+|..|.++|..|..||..|.-|+..+
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~~~v~~a 37 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAARSDAQAA 37 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999998888743
No 99
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=41.61 E-value=54 Score=34.88 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHHHhcccCCCcccc--CcchhHHHHHHHHHhhhHHHHhhhh-HHHHHHHHHhhHHHHHHHHH---Hh
Q psy8545 66 HRESYITALYFTCSSLTSVGFGNVSAN--TSAEKIFSICTMLIGALMHAVVFGN-VTAIIQRMYSRRSLYQTKWR---DL 139 (547)
Q Consensus 66 ~~~~Yi~SlYwai~TltTVGyGdi~p~--t~~E~if~i~~mi~G~l~~a~iig~-i~~ii~~~~~~~~~~~~k~~---~l 139 (547)
..++...+++-+++..||.||....-. +..-.++.++.|++|..--+--=|. +..+.--......+.+.... ..
T Consensus 303 ~~~~l~~a~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIGG~~GSTaGGIKv~r~~il~~~~~~el~~~~~P~~v~ 382 (494)
T 3pjz_A 303 PYDAFDQALFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGGCAGSTGGGMKVIRILLLTLQGARELKRLVHPRAVY 382 (494)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSCSCTTSSCCSSCHHHHHHHHHHHHHHHHHHHCSSSCC
T ss_pred HHHHHHHHHHheeecccCCcccccChHhCCHHHHHHHHHHHHHcCCcccCCCchhHHHHHHHHHHHHHHHhcccCCCcce
Confidence 445667799999999999999754322 3344567777788886442221111 12111111111222222111 01
Q ss_pred hhhhhccCCchHHHHhhhhhhh
Q psy8545 140 KEFLTLNQIPKELKQRMQDYFQ 161 (547)
Q Consensus 140 ~~fm~~~~ip~~L~~rv~~Y~~ 161 (547)
.--+..+.+|++..+++..++-
T Consensus 383 ~v~~~~r~i~~~~v~~~~~~~~ 404 (494)
T 3pjz_A 383 TIKVGGSALPQRVVDAVWGFFS 404 (494)
T ss_dssp CCCSSSCCCTTTHHHHHHHHHH
T ss_pred eeeECCEECCHHHHHHHHHHHH
Confidence 1234678899999999887754
No 100
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=40.54 E-value=22 Score=30.94 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=33.5
Q ss_pred ccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 218 NNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 218 ~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
...++||..+-.---....+++|++|.+.+..++.....+.+||++-
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~l~~Gd~i~ 98 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQERGKPARILKKGDVVE 98 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEETTSCCEEEETTCEEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEECCEEEEEECCCCEEE
Confidence 44567777653322334689999999999988776535789999885
No 101
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=39.83 E-value=37 Score=27.21 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=25.2
Q ss_pred CCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 234 LSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 234 ~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
...+++|++|.+++..++.....+++||++=
T Consensus 48 ~~E~~~Vl~G~~~~~~~~~~~~~l~~Gd~~~ 78 (107)
T 2i45_A 48 SDKVLFAVEGDMAVDFADGGSMTIREGEMAV 78 (107)
T ss_dssp CCEEEEESSSCEEEEETTSCEEEECTTEEEE
T ss_pred CCEEEEEEeCEEEEEECCCcEEEECCCCEEE
Confidence 4789999999999988772345799999885
No 102
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=39.47 E-value=63 Score=28.31 Aligned_cols=60 Identities=8% Similarity=0.093 Sum_probs=40.2
Q ss_pred EccCCCCCcEEEEEceeEEEEEcC-------eEEEEcCCCCeechhhhhhhccCCCCCCCCCCCCCCCCCccceeEEEEE
Q psy8545 228 IHKGDHLSSIYYLCNGSMEVVQNG-------MVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKA 300 (547)
Q Consensus 228 ~~qGd~~~~lYfI~~G~V~v~~~~-------~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~A 300 (547)
++.-+..+.+|+|++|.+.+.-.+ .-...+++|+++=. |.. -...-.|
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvV--------PkG-----------------veH~p~a 98 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNV--------PAE-----------------CWFYSIT 98 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEE--------CTT-----------------CEEEEEE
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEe--------CCC-----------------ccCcccC
Confidence 444566789999999999987432 23457899998852 100 1234566
Q ss_pred eeeeEEEEEeHH
Q psy8545 301 LTYCDLKSVNVV 312 (547)
Q Consensus 301 lt~c~ll~I~~~ 312 (547)
..+|.++.|...
T Consensus 99 ~~e~~vLLiEp~ 110 (140)
T 3d0j_A 99 QKDTKMMYVQDS 110 (140)
T ss_dssp CTTCEEEEEEES
T ss_pred CCceEEEEEEeC
Confidence 788888888643
No 103
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=38.86 E-value=68 Score=31.26 Aligned_cols=77 Identities=17% Similarity=0.097 Sum_probs=55.7
Q ss_pred hccccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEE-cCCCCeechhh---hhhhccCCCCCCCCCCCCCCCCC
Q psy8545 215 HIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAI-LGKGDLVGCDI---SMWLSEKNGGSAVGPGAGTGVDP 290 (547)
Q Consensus 215 ~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~-l~~Gd~FG~ei---sl~~~~p~~~s~~~~~~~~~~~~ 290 (547)
.+....+++|+.+-.+-+.-+-..+++.|.+.+..++..... -+.-++|. +. +++....
T Consensus 30 ~f~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~~~g~~~~~~g~R~svF~-~~~p~~lYvp~g---------------- 92 (270)
T 2qjv_A 30 GFDVWQLXAGESITLPSDERERCLVLVAGLASVXAADSFFYRIGQRMSPFE-RIPAYSVYLPHH---------------- 92 (270)
T ss_dssp EEEEEEECTTCEEEECCSSEEEEEEEEESCEEEEETTEEEEEECCCSSGGG-CSCCCEEEECSS----------------
T ss_pred EEEEEEecCCCEEEecCCCcEEEEEEecceEEEEECCEEEecccccccccc-CCCCcEEEECCC----------------
Confidence 356677899999888777777888999999999988876655 34567776 32 2222111
Q ss_pred ccceeEEEEEeeeeEEEEEeH
Q psy8545 291 IVKSSCDVKALTYCDLKSVNV 311 (547)
Q Consensus 291 ~~~~~~tv~Alt~c~ll~I~~ 311 (547)
..+++.|.++++++..+.
T Consensus 93 ---~~v~i~a~~~~~~~v~sA 110 (270)
T 2qjv_A 93 ---TEAXVTAETDLELAVCSA 110 (270)
T ss_dssp ---CCEEEEESSSEEEEEEEE
T ss_pred ---CEEEEEecCCceEEEEee
Confidence 467899999999988764
No 104
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=38.36 E-value=15 Score=33.48 Aligned_cols=46 Identities=11% Similarity=0.082 Sum_probs=29.5
Q ss_pred ccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCee
Q psy8545 218 NNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLV 263 (547)
Q Consensus 218 ~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~F 263 (547)
...++||...-.--.....+++|++|++++.-++.....+++||.+
T Consensus 83 ~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~ge~~~L~~GDsi 128 (172)
T 3es1_A 83 VVDMLPGKESPMHRTNSIDYGIVLEGEIELELDDGAKRTVRQGGII 128 (172)
T ss_dssp EEEECTTCBCCCBCCSEEEEEEEEESCEEEECGGGCEEEECTTCEE
T ss_pred EEEECCCCCCCCeecCceEEEEEEeCEEEEEECCCeEEEECCCCEE
Confidence 3345555532211223346889999999998763334579999998
No 105
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=38.15 E-value=24 Score=31.87 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=25.9
Q ss_pred CCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 233 HLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 233 ~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
.++.++||++|.+++.-++... .+++||.|-
T Consensus 109 ~gEE~~yVLeG~v~vtl~g~~~-~L~~Gds~~ 139 (166)
T 2vpv_A 109 RTYITFHVIQGIVEVTVCKNKF-LSVKGSTFQ 139 (166)
T ss_dssp SEEEEEEEEESEEEEEETTEEE-EEETTCEEE
T ss_pred CceEEEEEEEeEEEEEECCEEE-EEcCCCEEE
Confidence 4568999999999999877544 799999885
No 106
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=37.21 E-value=44 Score=29.99 Aligned_cols=46 Identities=11% Similarity=0.028 Sum_probs=33.3
Q ss_pred ccccCCCcEEEc--cCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 218 NNFCAPGEYLIH--KGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 218 ~~~y~~ge~I~~--qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
...++||..... -......+++|++|.+.+..++.. ..+.+||++=
T Consensus 108 ~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~~~-~~l~~GD~i~ 155 (192)
T 1y9q_A 108 EITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQW-HELQQGEHIR 155 (192)
T ss_dssp EEEECTTCEEEECCCSTTCEEEEEEEESCEEEEETTEE-EEECTTCEEE
T ss_pred EEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEECCEE-EEeCCCCEEE
Confidence 345678876542 223346899999999999887754 4799999885
No 107
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=36.94 E-value=14 Score=29.05 Aligned_cols=39 Identities=13% Similarity=0.239 Sum_probs=29.7
Q ss_pred chhhHHHhhhhccchhHhHHHhhHHHHHHHHHHHHHhhc
Q psy8545 411 KKSSVDRLDTQVTSLHHHVATLSQEVRNAIQALQELATT 449 (547)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (547)
...+|+.|+..|..-++++..|...|+.+.+-|+++..+
T Consensus 26 qE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 26 QEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 445689999999999999999999999999999888765
No 108
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=35.60 E-value=27 Score=31.32 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=32.0
Q ss_pred cccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 219 NFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 219 ~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
..+.||..+-.---....+++|++|++++..+++ ...+++||++=
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~g~-~~~l~~GD~i~ 102 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMVGRA-VSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEETTE-EEEECTTCEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEECCE-EEEeCCCCEEE
Confidence 3456666553333345679999999999988776 45789999875
No 109
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=35.54 E-value=28 Score=30.88 Aligned_cols=46 Identities=15% Similarity=0.111 Sum_probs=32.6
Q ss_pred ccccCCCcEE--EccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 218 NNFCAPGEYL--IHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 218 ~~~y~~ge~I--~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
...+.||... .+.-...+.+++|++|++++..++.. ..+++||++-
T Consensus 47 ~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~~~-~~l~~GD~i~ 94 (163)
T 3i7d_A 47 LVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQGE-HPMVPGDCAA 94 (163)
T ss_dssp EEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETTEE-EEECTTCEEE
T ss_pred EEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECCEE-EEeCCCCEEE
Confidence 3446677643 22223346899999999999987764 5789999875
No 110
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=34.03 E-value=28 Score=31.41 Aligned_cols=45 Identities=11% Similarity=0.052 Sum_probs=31.3
Q ss_pred ccCCCcEEE---ccCCCCCcEEEEEceeEEEEEcCe---EEEEcCCCCeec
Q psy8545 220 FCAPGEYLI---HKGDHLSSIYYLCNGSMEVVQNGM---VVAILGKGDLVG 264 (547)
Q Consensus 220 ~y~~ge~I~---~qGd~~~~lYfI~~G~V~v~~~~~---vl~~l~~Gd~FG 264 (547)
.+.||...- .--.....+++|++|.+++.-++. ....+++||++-
T Consensus 123 ~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~~~~l~~GD~~~ 173 (198)
T 2bnm_A 123 DVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMF 173 (198)
T ss_dssp EECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEE
T ss_pred EEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcccEEECCCCEEE
Confidence 456665432 112234689999999999987662 456899999885
No 111
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=33.97 E-value=29 Score=30.70 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=31.1
Q ss_pred ccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 220 FCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 220 ~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
.+.||..+-..--....+++|++|++++..+++ ...+++||++=
T Consensus 50 ~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v~g~-~~~l~~Gd~i~ 93 (156)
T 3kgz_A 50 EVDEGGYSTLERHAHVHAVMIHRGHGQCLVGET-ISDVAQGDLVF 93 (156)
T ss_dssp EEEEEEECCCBBCSSCEEEEEEEEEEEEEETTE-EEEEETTCEEE
T ss_pred EECCCCccCceeCCCcEEEEEEeCEEEEEECCE-EEEeCCCCEEE
Confidence 455665543333345679999999999998776 45689999874
No 112
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=33.82 E-value=37 Score=32.30 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=36.3
Q ss_pred ccccccCCCcEEEc-cCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 216 IRNNFCAPGEYLIH-KGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 216 l~~~~y~~ge~I~~-qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
+....++||..+=. .--..++.++|++|++.+..++... .+++||++-
T Consensus 167 ~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~~~~~~-~l~~GD~~~ 215 (246)
T 1sfn_A 167 VSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEENYY-PVTAGDIIW 215 (246)
T ss_dssp EEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEETTEEE-EEETTCEEE
T ss_pred EEEEEECCCCccCcccCCCceEEEEEEECEEEEEECCEEE-EcCCCCEEE
Confidence 45556788877643 3344568999999999998877654 799999886
No 113
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=33.01 E-value=16 Score=30.39 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=29.7
Q ss_pred cchhhHHHhhhhccchhHhHHHhhHHHHHHHHHHHHH
Q psy8545 410 EKKSSVDRLDTQVTSLHHHVATLSQEVRNAIQALQEL 446 (547)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (547)
++..++++..+++..|.++|.++.+|++..+-.=-.|
T Consensus 6 ~~~~q~~~~~~~~~~l~~~i~~~~~~~~~g~A~a~A~ 42 (105)
T 2lme_A 6 WSHPQFEKGAHKFRQLDNRLDKLDTRVDKGLASSAAL 42 (105)
T ss_dssp CCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999876443333
No 114
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=32.79 E-value=47 Score=28.96 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=32.6
Q ss_pred ccccCCCcE-E-EccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 218 NNFCAPGEY-L-IHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 218 ~~~y~~ge~-I-~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
...++||.. + .+.-.....+++|++|++.+..++.. ..+++||++-
T Consensus 50 ~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~~~~-~~l~~Gd~i~ 97 (162)
T 3l2h_A 50 LIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMENDQ-YPIAPGDFVG 97 (162)
T ss_dssp EEEECTTCBSSSSBEESSCCEEEEEEESCEEEEETTEE-EEECTTCEEE
T ss_pred EEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEECCEE-EEeCCCCEEE
Confidence 344667763 2 22223467899999999999987765 5799999884
No 115
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=32.63 E-value=30 Score=31.18 Aligned_cols=49 Identities=16% Similarity=0.252 Sum_probs=35.1
Q ss_pred ccccccCCCcEEEccCCCCCcEEEEEceeEEEEE---cCeEEEEcCCCCeec
Q psy8545 216 IRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ---NGMVVAILGKGDLVG 264 (547)
Q Consensus 216 l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~---~~~vl~~l~~Gd~FG 264 (547)
+....+.||......-..++++++|++|++++.- ++.....+++||++-
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcEEEEECCCCEEE
Confidence 3455678887765443345799999999988864 234566899999885
No 116
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=32.51 E-value=47 Score=31.02 Aligned_cols=48 Identities=17% Similarity=0.075 Sum_probs=37.0
Q ss_pred ccccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 216 IRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 216 l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
+....++||..+-..--..+.+++|++|++++..++. ...+++||.+=
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~g~-~~~l~~Gd~i~ 202 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVDGK-PFIVKKGESAV 202 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEETTE-EEEEETTEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEECCE-EEEECCCCEEE
Confidence 3455678898876544556789999999999988776 45789999885
No 117
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=32.28 E-value=40 Score=26.79 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=30.8
Q ss_pred ccccCCCcEEEccCCC-CCcE-EEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 218 NNFCAPGEYLIHKGDH-LSSI-YYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 218 ~~~y~~ge~I~~qGd~-~~~l-YfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
...+.+|..+-..--. ...+ ++|++|.+++..++.....+++||++-
T Consensus 37 ~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~~~~~~l~~Gd~~~ 85 (110)
T 2q30_A 37 SFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDGDAVIPAPRGAVLV 85 (110)
T ss_dssp EEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGGGCEEEECTTEEEE
T ss_pred EEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCCCEEEEECCCCEEE
Confidence 3345777766432222 2456 899999999987632345789999875
No 118
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=31.16 E-value=47 Score=27.39 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=30.5
Q ss_pred ccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 220 FCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 220 ~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
.+.||...-.---....+++|++|.+.+..++.. ..+++||++=
T Consensus 40 ~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i~~~~-~~l~~Gd~~~ 83 (128)
T 4i4a_A 40 IVRPETKSFRHSHNEYELFIVIQGNAIIRINDED-FPVTKGDLII 83 (128)
T ss_dssp EECTTEECCCBCCSSEEEEEEEESEEEEEETTEE-EEEETTCEEE
T ss_pred EECCCCccCCEecCCeEEEEEEeCEEEEEECCEE-EEECCCcEEE
Confidence 3456653322222456899999999999887764 4689999875
No 119
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=30.81 E-value=35 Score=28.22 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=29.8
Q ss_pred cccCCCcEEE--ccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 219 NFCAPGEYLI--HKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 219 ~~y~~ge~I~--~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
..++||..+- +.-+..+.+|+|++|.+.+..++.. ..+++||++=
T Consensus 31 ~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~~~~-~~l~~Gd~i~ 77 (125)
T 3cew_A 31 NHLPAGAGVPFVHSHKQNEEIYGILSGKGFITIDGEK-IELQAGDWLR 77 (125)
T ss_dssp EEECTTCBCSSEEEESSEEEEEEEEEEEEEEEETTEE-EEEETTEEEE
T ss_pred EEECCCCCCCCCccCCCceEEEEEEeCEEEEEECCEE-EEeCCCCEEE
Confidence 3456665441 2223334577799999999887754 4689998874
No 120
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=30.69 E-value=33 Score=28.67 Aligned_cols=45 Identities=11% Similarity=0.167 Sum_probs=31.2
Q ss_pred cccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 219 NFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 219 ~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
..++||..+-.---....+++|++|.+++..++.. ..+.+||++=
T Consensus 53 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~-~~l~~Gd~i~ 97 (126)
T 1vj2_A 53 FTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQGE-ETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEECCSSCEEEEEEESEEEEECSSCE-EEEETTEEEE
T ss_pred EEECCCCcCCceeCCCcEEEEEEEeEEEEEECCEE-EEECCCCEEE
Confidence 34566655432223367899999999999876654 4688998874
No 121
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=29.83 E-value=52 Score=31.04 Aligned_cols=45 Identities=13% Similarity=0.051 Sum_probs=33.9
Q ss_pred cccCC-CcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 219 NFCAP-GEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 219 ~~y~~-ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
..++| |..+-.---....+++|++|.+++..++... .+++||.+-
T Consensus 150 ~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~~-~l~~Gd~i~ 195 (243)
T 3h7j_A 150 AKIPGNGGEMPFHKHRNEQIGICIGGGYDMTVEGCTV-EMKFGTAYF 195 (243)
T ss_dssp EEECTTTEEEEEECCSSEEEEEECSSCEEEEETTEEE-EECTTCEEE
T ss_pred EEECCCCCcCCCEeCCCcEEEEEEECEEEEEECCEEE-EECCCCEEE
Confidence 34778 7766444344568999999999999887654 599999886
No 122
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=29.80 E-value=48 Score=27.98 Aligned_cols=46 Identities=22% Similarity=0.201 Sum_probs=32.1
Q ss_pred ccccCCCcEEEccCCC-CCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 218 NNFCAPGEYLIHKGDH-LSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 218 ~~~y~~ge~I~~qGd~-~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
...++||..+-.---. ...+++|++|.+.+..++.. ..+.+||++=
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~-~~l~~Gd~i~ 107 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNGKD-VPIKAGDVCF 107 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEETTEE-EEEETTEEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEECCEE-EEeCCCcEEE
Confidence 3456777655322222 36899999999999887754 5689999875
No 123
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=29.37 E-value=60 Score=29.59 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=32.0
Q ss_pred ccccccchhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEE
Q psy8545 193 REILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYY 239 (547)
Q Consensus 193 ~~ll~iplF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYf 239 (547)
...+++|.|.+++..+..++... .+||+|+++...++++-+
T Consensus 9 ~R~I~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~lti 49 (178)
T 2xp1_A 9 PRFYKHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCVL 49 (178)
T ss_dssp CGGGGSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEEE
T ss_pred eeeccCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEEE
Confidence 44678999999999888777655 359999999988766443
No 124
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=29.20 E-value=1.1e+02 Score=23.68 Aligned_cols=30 Identities=10% Similarity=0.313 Sum_probs=23.8
Q ss_pred CCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 234 LSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 234 ~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
...+++|++|.+.+..++.. ..+++||++=
T Consensus 50 ~~e~~~v~~G~~~~~~~~~~-~~l~~Gd~~~ 79 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAFRDQN-ITLQAGEMYV 79 (102)
T ss_dssp CCEEEEEEESEEEEECSSCE-EEEETTEEEE
T ss_pred CcEEEEEEeCEEEEEECCEE-EEEcCCCEEE
Confidence 36899999999999876653 4678998874
No 125
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=29.08 E-value=51 Score=27.53 Aligned_cols=31 Identities=16% Similarity=0.211 Sum_probs=25.3
Q ss_pred CCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 234 LSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 234 ~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
...+++|++|.+++..++.....+++||++=
T Consensus 64 ~~E~~~vl~G~~~~~~~~~~~~~l~~Gd~~~ 94 (134)
T 2o8q_A 64 GFQLFYVLRGWVEFEYEDIGAVMLEAGGSAF 94 (134)
T ss_dssp SCEEEEEEESEEEEEETTTEEEEEETTCEEE
T ss_pred CcEEEEEEeCEEEEEECCcEEEEecCCCEEE
Confidence 3789999999999988773446789999885
No 126
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=28.88 E-value=37 Score=29.72 Aligned_cols=47 Identities=6% Similarity=0.044 Sum_probs=31.4
Q ss_pred ccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCe--------EEEEcCCCCeec
Q psy8545 218 NNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGM--------VVAILGKGDLVG 264 (547)
Q Consensus 218 ~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~--------vl~~l~~Gd~FG 264 (547)
...++||..+-.---....+++|++|.+.+..++. ....+++||++=
T Consensus 45 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ 99 (163)
T 1lr5_A 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFS 99 (163)
T ss_dssp EEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEE
T ss_pred EEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEE
Confidence 34456666442111234579999999999987661 456799999875
No 127
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=28.83 E-value=45 Score=29.53 Aligned_cols=31 Identities=19% Similarity=0.494 Sum_probs=25.6
Q ss_pred CCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 233 HLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 233 ~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
..+.+++|++|++++..++. ...+++||.|=
T Consensus 83 ~~eE~~yVLeG~~~l~i~g~-~~~l~~GD~i~ 113 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIIIDGR-KVSASSGELIF 113 (151)
T ss_dssp SSEEEEEEEEEEEEEEETTE-EEEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEEECCE-EEEEcCCCEEE
Confidence 35689999999999998665 46799999885
No 128
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=28.29 E-value=28 Score=36.00 Aligned_cols=48 Identities=19% Similarity=0.089 Sum_probs=34.2
Q ss_pred cccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 217 RNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 217 ~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
....+.||+.+-.---....+|||++|+-.....+.....+++||+|=
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v~G~~~~~~~GD~i~ 173 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDGHKVELGANDFVL 173 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEETTEEEEECTTCEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEECCEEEEEcCCCEEE
Confidence 555678888775544455689999999986533333455789999985
No 129
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=28.28 E-value=27 Score=28.74 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=25.6
Q ss_pred CCCcEEEEEceeEEEEEcCeEE-EEcCCCCeec
Q psy8545 233 HLSSIYYLCNGSMEVVQNGMVV-AILGKGDLVG 264 (547)
Q Consensus 233 ~~~~lYfI~~G~V~v~~~~~vl-~~l~~Gd~FG 264 (547)
..+.+++|++|.+++.-++... ..+++||.+-
T Consensus 52 ~~~E~~~Vl~G~~~l~~~~~~~~~~l~~Gd~i~ 84 (112)
T 2opk_A 52 PQDEWVMVVSGSAGIECEGDTAPRVMRPGDWLH 84 (112)
T ss_dssp SSEEEEEEEESCEEEEETTCSSCEEECTTEEEE
T ss_pred CccEEEEEEeCeEEEEECCEEEEEEECCCCEEE
Confidence 4568999999999998776541 4689999885
No 130
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=27.68 E-value=61 Score=30.55 Aligned_cols=46 Identities=7% Similarity=0.066 Sum_probs=34.2
Q ss_pred cccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCee
Q psy8545 217 RNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLV 263 (547)
Q Consensus 217 ~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~F 263 (547)
....++||..+-.---....+++|++|.+++..++.. ..+.+||.+
T Consensus 37 ~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~~~~~-~~l~~Gd~i 82 (243)
T 3h7j_A 37 LMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTVGDVT-RKMTALESA 82 (243)
T ss_dssp EEEEECTTEEEEEECCSSEEEEEEEESEEEEEETTEE-EEEETTTCE
T ss_pred EEEEECCCCccCCEECCCcEEEEEEEeEEEEEECCEE-EEECCCCEE
Confidence 3344788887755444567899999999999987654 578999844
No 131
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=27.44 E-value=24 Score=21.26 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=16.1
Q ss_pred HHHhhhhccchhHhHHHhhHHHH
Q psy8545 415 VDRLDTQVTSLHHHVATLSQEVR 437 (547)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~ 437 (547)
++||.+....|.||++.|.-|+-
T Consensus 2 irrlkqknarlkqeiaaleyeia 24 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIA 24 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHH
Confidence 46777777778888888776653
No 132
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=26.99 E-value=49 Score=31.64 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=26.4
Q ss_pred CCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 234 LSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 234 ~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
.+++++|++|.+.+..++.....+++||.|-
T Consensus 186 ~~E~~~ILeG~v~lt~~~G~~~~~~aGD~~~ 216 (238)
T 3myx_A 186 IHELMNLIEGRVVLSLENGSSLTVNTGDTVF 216 (238)
T ss_dssp SCEEEEEEECCEEEEETTSCEEEECTTCEEE
T ss_pred CCEEEEEEEeEEEEEeCCCCEEEECCCCEEE
Confidence 4578899999999998766667899999996
No 133
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=25.86 E-value=45 Score=30.36 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=25.2
Q ss_pred CCCCcEEEEEceeEEEEE-c-C-----eEEEEcCCCCeec
Q psy8545 232 DHLSSIYYLCNGSMEVVQ-N-G-----MVVAILGKGDLVG 264 (547)
Q Consensus 232 d~~~~lYfI~~G~V~v~~-~-~-----~vl~~l~~Gd~FG 264 (547)
++.+.++++++|.+.+-. + + ..-..+++||+|=
T Consensus 52 ~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfl 91 (176)
T 1zvf_A 52 NPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYL 91 (176)
T ss_dssp CSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEE
T ss_pred CCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEE
Confidence 456799999999999874 3 3 1346789999995
No 134
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=25.13 E-value=1.1e+02 Score=31.25 Aligned_cols=74 Identities=23% Similarity=0.270 Sum_probs=52.1
Q ss_pred cCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeechhhhhhhccCCCCCCCCCCCCCCCCCccceeEEEEE
Q psy8545 221 CAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKA 300 (547)
Q Consensus 221 y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~A 300 (547)
++||+..-..-.....+|+|++|.-.+.-++.. ...++||+|-. |. -......+
T Consensus 286 L~pG~~t~~hRht~s~Vy~V~eG~G~~~I~~~~-~~w~~gD~fvv--------P~-----------------w~~h~~~n 339 (368)
T 3nw4_A 286 LRAGTETATRNEVGSTVFQVFEGAGAVVMNGET-TKLEKGDMFVV--------PS-----------------WVPWSLQA 339 (368)
T ss_dssp ECTTCBCCCEEESSCEEEEEEESCEEEEETTEE-EEECTTCEEEE--------CT-----------------TCCEEEEE
T ss_pred ECCCCccCCeeccccEEEEEEeCcEEEEECCEE-EEecCCCEEEE--------CC-----------------CCcEEEEe
Confidence 344544433335567899999999998887754 56899999962 10 03456678
Q ss_pred eeeeEEEEEeHHHHHHHHHh
Q psy8545 301 LTYCDLKSVNVVGLVEVLRL 320 (547)
Q Consensus 301 lt~c~ll~I~~~~f~~ll~~ 320 (547)
.++|.++.++-.-+.+-|..
T Consensus 340 ~~~a~Lf~~~D~Pl~~~LGl 359 (368)
T 3nw4_A 340 ETQFDLFRFSDAPIMEALSF 359 (368)
T ss_dssp SSSEEEEEEESHHHHHHTTC
T ss_pred CCCEEEEEEeCHHHHHHhCC
Confidence 89999999998877776543
No 135
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=25.08 E-value=1.3e+02 Score=30.30 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=47.1
Q ss_pred ccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeechhhhhhhccCCCCCCCCCCCCCCCCCccceeEEEE
Q psy8545 220 FCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVK 299 (547)
Q Consensus 220 ~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~~~~~~~~~~~~~tv~ 299 (547)
.++||...-.--.....+|+|++|+.++.-++ ....+++||+|-. .-. ....++
T Consensus 274 ~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v~~-~~~~~~~GD~~~v--P~~-----------------------~~H~~~ 327 (354)
T 2d40_A 274 LLPKGFASRVARTTDSTIYHVVEGSGQVIIGN-ETFSFSAKDIFVV--PTW-----------------------HGVSFQ 327 (354)
T ss_dssp EECTTCBCCCBEESSCEEEEEEEEEEEEEETT-EEEEEETTCEEEE--CTT-----------------------CCEEEE
T ss_pred EECCCCCCCceecCCcEEEEEEeCeEEEEECC-EEEEEcCCCEEEE--CCC-----------------------CeEEEE
Confidence 44555543332334558999999999988766 4467899999862 000 123445
Q ss_pred EeeeeEEEEEeHHHHHHHH
Q psy8545 300 ALTYCDLKSVNVVGLVEVL 318 (547)
Q Consensus 300 Alt~c~ll~I~~~~f~~ll 318 (547)
+.+++.++++.-.-+.+-|
T Consensus 328 n~e~~~l~~~~d~p~~~~l 346 (354)
T 2d40_A 328 TTQDSVLFSFSDRPVQEAL 346 (354)
T ss_dssp EEEEEEEEEEESHHHHHHT
T ss_pred eCCCEEEEEEcCHHHHHHh
Confidence 5688999998766665544
No 136
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=24.58 E-value=70 Score=29.08 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=25.1
Q ss_pred CCCcEEEEEceeEEEEE-c-C-eEEEEcCCCCeec
Q psy8545 233 HLSSIYYLCNGSMEVVQ-N-G-MVVAILGKGDLVG 264 (547)
Q Consensus 233 ~~~~lYfI~~G~V~v~~-~-~-~vl~~l~~Gd~FG 264 (547)
+.+.++++++|.+.+-. + + ..-..+++||+|=
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f~ 88 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFL 88 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEE
T ss_pred CCceEEEEEeeEEEEEEEcCCceeeEEECCCCEEE
Confidence 56899999999998874 3 3 2446789999995
No 137
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=23.77 E-value=87 Score=31.17 Aligned_cols=49 Identities=20% Similarity=0.201 Sum_probs=35.3
Q ss_pred ccccccCCCcEEEccCCC-CCcEEEEEceeEEEEE---cCe-EEEEcCCCCeec
Q psy8545 216 IRNNFCAPGEYLIHKGDH-LSSIYYLCNGSMEVVQ---NGM-VVAILGKGDLVG 264 (547)
Q Consensus 216 l~~~~y~~ge~I~~qGd~-~~~lYfI~~G~V~v~~---~~~-vl~~l~~Gd~FG 264 (547)
+....+.||..+-..--. ..++++|++|++++.- ++. ....+++||+|=
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEEEEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEEEEEECCCCEEE
Confidence 345567888876433223 4799999999999875 554 467899999985
No 138
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=23.39 E-value=89 Score=30.51 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=34.1
Q ss_pred ccccCCCcEEE-ccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 218 NNFCAPGEYLI-HKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 218 ~~~y~~ge~I~-~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
.....||...- +.-+....+++|++|++++..++.. ..+++||++=
T Consensus 50 ~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~-~~l~~Gd~~~ 96 (337)
T 1y3t_A 50 LLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLDGER-YLLISGDYAN 96 (337)
T ss_dssp EEEECTTCEEEEEECTTCCEEEEEEESCEEEEETTEE-EEECTTCEEE
T ss_pred EEEeCCCCCCCceeCCCceEEEEEEECEEEEEECCEE-EEECCCCEEE
Confidence 34567877653 3333378999999999999877654 5799999885
No 139
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=22.48 E-value=60 Score=27.87 Aligned_cols=45 Identities=13% Similarity=-0.071 Sum_probs=30.2
Q ss_pred ccCCCcEEE-ccCCCCCcEEEEEceeEEEEEcCeE-----EEEcCCCCeec
Q psy8545 220 FCAPGEYLI-HKGDHLSSIYYLCNGSMEVVQNGMV-----VAILGKGDLVG 264 (547)
Q Consensus 220 ~y~~ge~I~-~qGd~~~~lYfI~~G~V~v~~~~~v-----l~~l~~Gd~FG 264 (547)
.++||..+- +.-...+.+++|++|.+.+..++.. ...+.+||++=
T Consensus 49 ~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~ 99 (148)
T 2oa2_A 49 SIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAIL 99 (148)
T ss_dssp EECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEE
T ss_pred EECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEEE
Confidence 456666442 2222345899999999999875543 25789999874
No 140
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=22.32 E-value=1.1e+02 Score=31.67 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=43.8
Q ss_pred HHHhhhhccchhHhHHHhhHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCCCCCCCCCC--CCcccccccccCCCCCc
Q psy8545 415 VDRLDTQVTSLHHHVATLSQEVRNAIQALQELATTSSNVASNRYPYPLPAHSNPNLPHNTQ--CPQQRALLQRSSSHPPE 492 (547)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 492 (547)
.++|-.++..|..++.+|.++++.+-..|++++.. +||+++..+ ++...+.+.|.---||+
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------ipN~~~~~vp~g~e~~n~~~~~~g~~~~ 128 (421)
T 1ses_A 66 KEALIARGKALGEEAKRLEEALREKEARLEALLLQ-----------------VPLPPWPGAPVGGEEANREIKRVGGPPE 128 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----------------CCCCCCTTSCSSSGGGCEEEEEESCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------CCCCCCCCCCCCCccccEEEEEeCCCCc
Confidence 45677788888889999999999998888888844 799998764 22233455665555554
No 141
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=22.04 E-value=65 Score=24.01 Aligned_cols=36 Identities=14% Similarity=0.292 Sum_probs=27.6
Q ss_pred cchhhHHHhhhhccchhHhHHHhhHHHHHHHHHHHH
Q psy8545 410 EKKSSVDRLDTQVTSLHHHVATLSQEVRNAIQALQE 445 (547)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (547)
.....++.|..+...|...|+.|..|+...=++|.+
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344567888888888888899988888777766654
No 142
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=21.96 E-value=78 Score=30.41 Aligned_cols=46 Identities=17% Similarity=0.023 Sum_probs=33.3
Q ss_pred ccccCCCcEEEc-cCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 218 NNFCAPGEYLIH-KGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 218 ~~~y~~ge~I~~-qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
...+.||..+-. .--...++++|++|++.+.-++.. ..+++||++=
T Consensus 186 ~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i~~~~-~~l~~GD~i~ 232 (274)
T 1sef_A 186 ILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNEW-YPVEKGDYIF 232 (274)
T ss_dssp EEEECTTCBCSSCBCCSCCEEEEEEECEEEEEETTEE-EEEETTCEEE
T ss_pred EEEECCCCccCcceeccCeEEEEEEeCEEEEEECCEE-EEECCCCEEE
Confidence 345677776532 222456899999999999887754 5789999885
No 143
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=21.83 E-value=84 Score=29.72 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=33.0
Q ss_pred ccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 218 NNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 218 ~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
...++||...-..- .+.+++|++|++++.-+++. ..+++||++-
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~~~~~-~~l~~Gd~~~ 97 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAVGGET-RTLREYDYVY 97 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEECSSCE-EEECTTEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEECCEE-EEECCCCEEE
Confidence 34567776654432 67899999999999877654 5799999885
No 144
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=21.55 E-value=79 Score=30.62 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=37.1
Q ss_pred hccccccCCCcEEEc-cCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 215 HIRNNFCAPGEYLIH-KGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 215 ~l~~~~y~~ge~I~~-qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
.+....++||..|-. +-...++.++|++|+..+..++.. ..+++||++-
T Consensus 192 ~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~~~~~-~~v~~GD~~~ 241 (278)
T 1sq4_A 192 HVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQDW-VEVEAGDFMW 241 (278)
T ss_dssp EEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEETTEE-EEEETTCEEE
T ss_pred EEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEECCEE-EEeCCCCEEE
Confidence 345667889998864 444455889999999998877654 5789999875
No 145
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=21.03 E-value=56 Score=33.01 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=33.6
Q ss_pred cccccCCCcEEEccCCCCCcEEEEEceeEEE-EEcCeEEEEcCCCCeec
Q psy8545 217 RNNFCAPGEYLIHKGDHLSSIYYLCNGSMEV-VQNGMVVAILGKGDLVG 264 (547)
Q Consensus 217 ~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v-~~~~~vl~~l~~Gd~FG 264 (547)
....+.||...-.---....+++|++|+..+ ..+++ ...+++||+|=
T Consensus 103 ~~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~t~v~g~-~~~l~~GD~~~ 150 (354)
T 2d40_A 103 GLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDGE-RTPMNEGDFIL 150 (354)
T ss_dssp EEEEECTTCEEEEEEESSCEEEEEEECSSCEEEETTE-EEECCTTCEEE
T ss_pred EEEEECCCCCcCCeecCcceEEEEEEEEEEEEEECCE-EEEEcCCCEEE
Confidence 3445778877633333456999999999877 44554 46799999985
No 146
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=20.76 E-value=62 Score=33.03 Aligned_cols=47 Identities=19% Similarity=0.276 Sum_probs=34.8
Q ss_pred cccccCCCcEEEccCCCCCcEEEEEceeEE-EEEcCeEEEEcCCCCeec
Q psy8545 217 RNNFCAPGEYLIHKGDHLSSIYYLCNGSME-VVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 217 ~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~-v~~~~~vl~~l~~Gd~FG 264 (547)
....+.||+.+-.---....+|||++|+-. +..+++ ...+++||+|=
T Consensus 106 ~~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~~vdG~-~~~~~~GD~v~ 153 (368)
T 3nw4_A 106 AIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVNGD-PVRMSRGDLLL 153 (368)
T ss_dssp EEEEECTTCEEEEEEESSCEEEECSSCEEEEEEETTE-EEEEETTCEEE
T ss_pred EEEEECCCCccCceecccceEEEEEecceEEEEECCE-EEEEeCCCEEE
Confidence 445678888876555556799999999985 444554 45689999985
No 147
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=20.49 E-value=55 Score=33.76 Aligned_cols=47 Identities=17% Similarity=0.156 Sum_probs=33.6
Q ss_pred cccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeec
Q psy8545 217 RNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264 (547)
Q Consensus 217 ~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG 264 (547)
....++||+..-.--.....+|||++|+..+..+++ ...+++||+|-
T Consensus 297 ~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V~ge-~~~~~~GD~~~ 343 (394)
T 3bu7_A 297 SMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIVGGK-RFDWSEHDIFC 343 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECCEEEEETTE-EEEECTTCEEE
T ss_pred EEEEECCCCcCCCcccCCcEEEEEEeCeEEEEECCE-EEEEeCCCEEE
Confidence 344566776664444456689999999997766664 46789999996
No 148
>1i1r_B Viral IL-6; cytokine/receptor complex, GP130; 2.40A {Human herpesvirus 8} SCOP: a.26.1.1
Probab=20.47 E-value=3.3e+02 Score=24.75 Aligned_cols=52 Identities=13% Similarity=0.038 Sum_probs=32.7
Q ss_pred CCcccccccccccchhhHHHhhhhccchhHhHHHhhHHHHHHHHHHHHHhhc
Q psy8545 398 MRGAERFRRGELEKKSSVDRLDTQVTSLHHHVATLSQEVRNAIQALQELATT 449 (547)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (547)
..+-.+.-+|-++-..-++-+.+.+......|..+...++..++.|++....
T Consensus 68 e~CL~rI~~GL~~yq~~L~~l~~~f~~~~~~v~~lq~~t~~L~~~i~q~~k~ 119 (181)
T 1i1r_B 68 TSCLKKLADGFFEFEVLFKFLTTEFGKSVINVDVMELLTKTLGWDIQEELNK 119 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHhC
Confidence 4456677777776666666666666655555556666666666666665543
Done!