RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8545
(547 letters)
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 193
Score = 73.9 bits (180), Expect = 7e-16
Identities = 44/203 (21%), Positives = 88/203 (43%), Gaps = 22/203 (10%)
Query: 127 SRRSLYQTKWRDLKEFLTLNQIPKELKQRMQDYFQTMWSLSHGIDVHETLKEFPEELRGD 186
S R YQ K++ ++++++ +++P + +Q++ DY++ + D L E LR +
Sbjct: 2 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREE 60
Query: 187 VSMHLHREILQL-PIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSM 245
+ R+++ P+F A + + ++ PG+Y+I +G +Y++ +G +
Sbjct: 61 IVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV 120
Query: 246 EVVQNGMVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCD 305
V+ G L G G + + V+A TYC
Sbjct: 121 SVLTKGNKEMKLSDGSYFGEICLLTRGRRT--------------------ASVRADTYCR 160
Query: 306 LKSVNVVGLVEVLRLYPEYQQEF 328
L S++V EVL YP ++ F
Sbjct: 161 LYSLSVDNFNEVLEEYPMMRRAF 183
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 80
Score = 61.3 bits (149), Expect = 1e-12
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 68 ESYITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAII 122
ES+ +LY+T ++ +VG+G+ S +T F++ +++G AV + +
Sbjct: 26 ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 80
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
188]}
Length = 116
Score = 56.5 bits (136), Expect = 1e-10
Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 25/114 (21%)
Query: 11 ILTLLMLSFTLVAHWLACLWFVIADYERNRYRQDWDLGWIHTLAERLKVNVSEISHRESY 70
+TL+ + + A + D N + S+
Sbjct: 27 FITLITGLYLVTNALFALAYLACGDVIEN-------------------------ARPGSF 61
Query: 71 ITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQR 124
A +F+ ++ ++G+G + L G L AV + A R
Sbjct: 62 TDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 115
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Length = 116
Score = 51.1 bits (122), Expect = 1e-08
Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 25/114 (21%)
Query: 11 ILTLLMLSFTLVAHWLACLWFVIADYERNRYRQDWDLGWIHTLAERLKVNVSEISHRESY 70
L F + A L+ + N +
Sbjct: 28 FFASLAALFVVNNTLFALLYQLGDAPIAN-------------------------QSPPGF 62
Query: 71 ITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQR 124
+ A +F+ +L +VG+G++ T + + +G A+ G V A R
Sbjct: 63 VGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFAR 116
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 103
Score = 50.3 bits (120), Expect = 1e-08
Identities = 12/61 (19%), Positives = 27/61 (44%)
Query: 69 SYITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSR 128
+Y AL+++ + T+VG+G++ T + ++ M+ G +V +
Sbjct: 40 TYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQE 99
Query: 129 R 129
R
Sbjct: 100 R 100
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 155
Score = 44.1 bits (103), Expect = 6e-06
Identities = 20/152 (13%), Positives = 42/152 (27%), Gaps = 16/152 (10%)
Query: 174 ETLKEFPEELRGDVSMHLHREILQ-LPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGD 232
L + P E R + + L+ + FE L+ + L G L +GD
Sbjct: 5 ACLDKRPLE-RSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGD 63
Query: 233 HLSSIYYLCNGSMEVVQNGMVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIV 292
++ Y + GS++V + + + +
Sbjct: 64 IGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGESILDNT-------------- 109
Query: 293 KSSCDVKALTYCDLKSVNVVGLVEVLRLYPEY 324
+ +L + + Y +Y
Sbjct: 110 PRHATIVTRESSELLRIEQEDFKALWEKYRQY 141
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti
[TaxId: 381]}
Length = 133
Score = 43.6 bits (102), Expect = 7e-06
Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 23/138 (16%)
Query: 192 HREIL-QLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQN 250
+ +++ +P+F+ L + +R G + G+ ++++ GS+ V
Sbjct: 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP 68
Query: 251 GMVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVN 310
V G IS S V A T L S++
Sbjct: 69 NPVELGPGAFFGEMALISGE----------------------PRSATVSAATTVSLLSLH 106
Query: 311 VVGLVEVLRLYPEYQQEF 328
+ PE + F
Sbjct: 107 SADFQMLCSSSPEIAEIF 124
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 147
Score = 42.5 bits (99), Expect = 2e-05
Identities = 19/140 (13%), Positives = 43/140 (30%), Gaps = 9/140 (6%)
Query: 197 QLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAI 256
LP ++ + I GE +I +GD S + + +G + +
Sbjct: 6 SLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKR----- 60
Query: 257 LGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVE 316
+ + ++ ++ G G A P + A+ +++V
Sbjct: 61 -KGKSDIEENGAVEIARCLRGQYFGELALVTNKP---RAASAHAIGTVKCLAMDVQAFER 116
Query: 317 VLRLYPEYQQEFAHDIQHDL 336
+L E + + L
Sbjct: 117 LLGPCMEIMKRNIATYEEQL 136
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 136
Score = 40.5 bits (94), Expect = 8e-05
Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 20/137 (14%)
Query: 191 LHREILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQN 250
L + I + +F + + GE +I +GD + Y + G M+V N
Sbjct: 18 LAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVN 77
Query: 251 GMVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVN 310
+G+G G +++ + VKA T L ++
Sbjct: 78 NEWATSVGEGGSFGE-LALIYGT-------------------PRAATVKAKTNVKLWGID 117
Query: 311 VVGLVEVLRLYPEYQQE 327
+L +++
Sbjct: 118 RDSYRRILMGSTLRKRK 134
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel
6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 137
Score = 38.8 bits (89), Expect = 4e-04
Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 17/133 (12%)
Query: 197 QLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVV------QN 250
++P+FE + L + ++ YL+ +GD ++ + ++ G +E V
Sbjct: 10 RVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSG 69
Query: 251 GMVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVN 310
++L +GD G ++ W + GS + T VKALT + ++
Sbjct: 70 FYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRT-----------VKALTEVEAFALI 118
Query: 311 VVGLVEVLRLYPE 323
L V +
Sbjct: 119 ADELKFVASQFRR 131
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396,
N-terminal domain {Porphyromonas gingivalis [TaxId:
837]}
Length = 142
Score = 37.1 bits (85), Expect = 0.001
Identities = 19/147 (12%), Positives = 49/147 (33%), Gaps = 20/147 (13%)
Query: 190 HLHREILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ 249
HL R++ + + +LL I+ C + +GD ++++YL G +++++
Sbjct: 3 HLLRDV-----WSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILR 57
Query: 250 NGMVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSV 309
G+ + S A+ + ++
Sbjct: 58 EGVYGRFHISRIVKPGQFFGM---------------RPYFAEETCSSTAIAVENSKVLAI 102
Query: 310 NVVGLVEVLRLYPEYQQEFAHDIQHDL 336
V + +L+ + + F + +L
Sbjct: 103 PVEAIEALLKGNTSFCRYFLKALAKEL 129
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 124
Score = 36.6 bits (84), Expect = 0.001
Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
Query: 190 HLHREILQLPIFEAATQGCLKLLSLHIR-NNFCAPGEYLIHKGDHLSSIYYLCNGSMEVV 248
++ E+L + + + L+ + + G L ++G+ +S Y + GS+ VV
Sbjct: 7 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVV 66
Query: 249 QNGMVVAILGKGDLVGCDISMWLSEK 274
G V +++
Sbjct: 67 IYGKGVVCTLHEGDDFGKLALVNDAP 92
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 134
Score = 35.2 bits (80), Expect = 0.006
Identities = 17/128 (13%), Positives = 38/128 (29%), Gaps = 11/128 (8%)
Query: 209 LKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVGCDIS 268
L L H +I+ GD +++++ GS+ ++
Sbjct: 5 LDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDD-----------GREM 53
Query: 269 MWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEF 328
+ +G G + S V+A C++ ++ E+ + E
Sbjct: 54 IIGYLNSGDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTL 113
Query: 329 AHDIQHDL 336
+ L
Sbjct: 114 GSQMADRL 121
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 132
Score = 33.7 bits (76), Expect = 0.018
Identities = 22/132 (16%), Positives = 47/132 (35%), Gaps = 14/132 (10%)
Query: 205 TQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVG 264
T L+ H + LIH+G+ ++YY+ GS+ V+ + L
Sbjct: 2 TDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQ 61
Query: 265 CDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEY 324
D L + + S V+A T C++ ++ +++++ P+
Sbjct: 62 GDFIGELGL--------------FEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDI 107
Query: 325 QQEFAHDIQHDL 336
+ + L
Sbjct: 108 LMRLSAQMARRL 119
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 136
Score = 32.8 bits (74), Expect = 0.039
Identities = 16/139 (11%), Positives = 42/139 (30%), Gaps = 16/139 (11%)
Query: 190 HLHREILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQ 249
L + +F+ + + + GE++I +GD + Y + G+ ++
Sbjct: 13 RLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV 72
Query: 250 NGMVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSV 309
V C + G A+ + + A + L +
Sbjct: 73 KCDGVGR--------CVGNYDNRGSFGELALMYNT--------PRAATITATSPGALWGL 116
Query: 310 NVVGLVEVLRLYPEYQQEF 328
+ V ++ +++
Sbjct: 117 DRVTFRRIIVKNNAKKRKM 135
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 132
Score = 31.7 bits (71), Expect = 0.091
Identities = 15/131 (11%), Positives = 36/131 (27%), Gaps = 15/131 (11%)
Query: 194 EIL-QLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGM 252
E L ++ I E+ + ++ + G+ ++ +G+ + + GS V+Q
Sbjct: 2 EFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRS 61
Query: 253 VVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVV 312
+ +G + V A ++
Sbjct: 62 ENEEFVEVGRLGPSDYFGEIALLMNR--------------PRAATVVARGPLKCVKLDRP 107
Query: 313 GLVEVLRLYPE 323
VL +
Sbjct: 108 RFERVLGPCSD 118
>d1sdda1 b.6.1.3 (A:1-180) Coagulation factor V {Cow (Bos taurus)
[TaxId: 9913]}
Length = 180
Score = 29.7 bits (66), Expect = 0.68
Identities = 5/41 (12%), Positives = 13/41 (31%)
Query: 487 SSHPPEMFCWESMDQERYAHCVSQSTQTDYPIDMFESFVKE 527
S H + + + Y+ + D + + + E
Sbjct: 83 SIHAQGIKYSKFSEGASYSDHTLPMEKMDDAVAPGQEYTYE 123
>d2ocda1 c.88.1.1 (A:2-337) Asparaginase type II {Vibrio cholerae
[TaxId: 666]}
Length = 336
Score = 28.2 bits (62), Expect = 2.3
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 163 MWSLSHGIDVHETLKEFPEELRGDVSM 189
+ LS + E + + LRG++++
Sbjct: 310 HYLLSQNLSYEEVKAKMQQVLRGEMTL 336
>d1no7a_ e.48.1.1 (A:) Major capsid protein VP5 {Herpes simplex
virus 1 [TaxId: 10298]}
Length = 562
Score = 28.2 bits (63), Expect = 2.6
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 453 VASNRYPYPLPAH---SNPNLPHN--TQCPQQRALLQRSSSHPPEMFC 495
+ + Y YPLP H + + N P R L ++ PP +
Sbjct: 466 IQNGDYFYPLPVHALFAGADHVANAPNFPPALRDLSRQVPLVPPALGA 513
>d1vbga2 c.8.1.1 (A:383-517) Pyruvate phosphate dikinase, central
domain {Maize (Zea mays) [TaxId: 4577]}
Length = 135
Score = 26.9 bits (59), Expect = 3.4
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 277 GSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSV 309
G PGA G +V ++ D +A ++
Sbjct: 16 GLPASPGAAVG--QVVFTAEDAEAWHSQGKAAI 46
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator
TM1171, N-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 129
Score = 26.5 bits (57), Expect = 4.6
Identities = 18/128 (14%), Positives = 36/128 (28%), Gaps = 14/128 (10%)
Query: 209 LKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVGCDIS 268
LK L + GE + H+ D + + L G+++ +
Sbjct: 3 LKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHV--------------SENG 48
Query: 269 MWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEF 328
L +G + +V A + S+ +++L E F
Sbjct: 49 KTLEIDEIKPVQIIASGFIFSSEPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFF 108
Query: 329 AHDIQHDL 336
D+
Sbjct: 109 LKDVSEHF 116
>d1y02a1 a.140.2.1 (A:71-114) Rififylin (FYVE-RING finger protein
Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Length = 44
Score = 24.4 bits (53), Expect = 5.1
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 126 YSRRSLYQTKWRDLKEFLTLNQIPKEL 152
+ R L + K +DL+++L+L+ I E+
Sbjct: 1 FQREELMKMKVKDLRDYLSLHDISTEM 27
>d1zq1a2 c.88.1.1 (A:76-438) Glutamyl-tRNA(Gln) amidotransferase
subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}
Length = 363
Score = 27.0 bits (59), Expect = 7.1
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 163 MWSLSHGIDVHETLKEFPEELRGDVS 188
MW L H ++ E K G+++
Sbjct: 328 MWVLGHTQNLEEVRKMMLTNYAGEIT 353
>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 408
Score = 26.9 bits (58), Expect = 8.0
Identities = 14/104 (13%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Query: 147 QIPKELKQRMQDYFQTMWSLSHGIDVHET---LKEFPEELRGDVSMHLHREILQLPIFEA 203
Q P+ + +++ Y++ + H H+ + E +R V+ ++ + ++
Sbjct: 33 QKPRAVLEKLMHYYENDNANVHR-GAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTR 91
Query: 204 ATQGCLKLLSLHIRNNFCAPG-EYLIHKGDHLSSIYYLCNGSME 246
+ L++ N G E + +H S++ + +
Sbjct: 92 NATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAK 135
>d1h5wa_ e.27.1.1 (A:) Upper collar protein gp10 (connector protein)
{Bacteriophage phi-29 [TaxId: 10756]}
Length = 268
Score = 26.3 bits (58), Expect = 8.1
Identities = 12/114 (10%), Positives = 33/114 (28%), Gaps = 4/114 (3%)
Query: 46 DLGWIHTLAERL-KVNVSEISHRESYITALYFTCSSLTSVGFGNVSANTSAEKIFSICTM 104
+ A L ++ ++ + T + + + V
Sbjct: 114 TTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHE 173
Query: 105 LIGALMHAVVFGNVTAIIQRMYSRRSLYQTKWRDLKEFLTLNQIPKELKQRMQD 158
+ + V + ++ ++ + W ++ FL + E K+RM
Sbjct: 174 ALDSDSIEVFKTDAPYVVDKL---NAQKNAVWNEMMTFLGIKNANLEKKERMVT 224
>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate
dehydrogenase/cyclohydrolase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 171
Score = 26.2 bits (57), Expect = 8.1
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 251 GMVVAILGKGDLVGCDISMWLSEKN 275
G ++ + ++VG ++ L+
Sbjct: 29 GKKCIVINRSEIVGRPLAALLANDG 53
>d2pbea1 a.160.1.5 (A:138-282) Aminoglycoside 6-adenylyltransferase
AadK {Bacillus subtilis [TaxId: 1423]}
Length = 145
Score = 25.8 bits (57), Expect = 9.1
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 516 YPIDMFESFVKENKLRVLEW-LGLKHN 541
+ ID V+ N LR++ W + +
Sbjct: 40 FAIDHLNEIVRPNLLRMMAWHIASQKG 66
>d2d6fa2 c.88.1.1 (A:84-435) Glutamyl-tRNA(Gln) amidotransferase
subunit D, GatD {Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 352
Score = 26.2 bits (57), Expect = 10.0
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 163 MWSLSHGIDVHETLKEFPEELRGDVS 188
W L D + E + G+++
Sbjct: 317 CWVLGQTDDPEMAREMMRENIAGEIN 342
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.404
Gapped
Lambda K H
0.267 0.0571 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,035,594
Number of extensions: 92998
Number of successful extensions: 271
Number of sequences better than 10.0: 1
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 35
Length of query: 547
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 457
Effective length of database: 1,171,896
Effective search space: 535556472
Effective search space used: 535556472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.3 bits)