Query psy8546
Match_columns 177
No_of_seqs 164 out of 322
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 21:38:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00795 NOS_oxygenase_euk Nitr 100.0 1.6E-54 3.5E-59 389.9 6.5 107 1-118 271-412 (412)
2 cd00794 NOS_oxygenase_prok Nit 100.0 3.7E-54 8E-59 382.1 6.3 104 1-115 215-353 (353)
3 cd00575 NOS_oxygenase Nitric o 100.0 4.9E-54 1.1E-58 381.6 6.3 104 1-115 218-356 (356)
4 PF02898 NO_synthase: Nitric o 100.0 5E-55 1.1E-59 390.5 -1.0 113 1-124 225-372 (372)
5 COG4362 Nitric oxide synthase, 100.0 3.2E-46 6.8E-51 325.1 5.5 110 1-121 209-353 (355)
6 cd00794 NOS_oxygenase_prok Nit 99.7 2E-17 4.3E-22 147.9 2.8 74 65-149 223-299 (353)
7 cd00575 NOS_oxygenase Nitric o 99.7 3.2E-17 7E-22 146.7 2.8 74 65-149 226-302 (356)
8 cd00795 NOS_oxygenase_euk Nitr 99.6 6.9E-17 1.5E-21 146.7 2.8 74 65-149 279-355 (412)
9 PF02898 NO_synthase: Nitric o 99.6 7.5E-16 1.6E-20 138.9 1.3 73 66-149 234-309 (372)
10 COG4362 Nitric oxide synthase, 99.4 4.7E-14 1E-18 124.1 2.9 75 64-149 216-293 (355)
11 KOG1158|consensus 98.1 2.1E-06 4.6E-11 82.9 2.9 51 126-177 26-76 (645)
12 TIGR01931 cysJ sulfite reducta 94.3 0.035 7.6E-07 53.1 3.1 27 146-172 58-84 (597)
13 PRK10953 cysJ sulfite reductas 93.9 0.048 1E-06 52.5 3.1 26 147-172 62-87 (600)
14 KOG1158|consensus 76.2 1.9 4.2E-05 42.4 2.5 60 85-153 25-84 (645)
15 COG0369 CysJ Sulfite reductase 68.8 4.6 9.9E-05 39.3 3.1 29 146-174 47-75 (587)
16 PF14168 YjzC: YjzC-like prote 67.1 3.3 7.1E-05 28.9 1.3 17 12-30 12-28 (57)
17 PF14488 DUF4434: Domain of un 66.0 1.9 4.1E-05 35.0 -0.1 25 14-38 120-144 (166)
18 PF14701 hDGE_amylase: glucano 47.3 16 0.00035 34.4 2.7 58 8-67 325-420 (423)
19 PRK11921 metallo-beta-lactamas 46.8 18 0.00039 32.6 2.8 28 145-172 246-273 (394)
20 PRK05452 anaerobic nitric oxid 45.8 20 0.00043 33.7 3.0 28 145-172 250-277 (479)
21 PHA03351 tegument protein UL16 44.8 4.3 9.2E-05 34.7 -1.4 31 20-53 98-140 (235)
22 PF04843 Herpes_teg_N: Herpesv 32.5 18 0.00039 29.8 0.5 40 10-50 87-150 (172)
23 PF14754 IFR3_antag: Papain-li 32.1 13 0.00028 31.6 -0.4 18 16-40 76-93 (249)
24 PHA02651 IL-1 receptor antagon 29.9 22 0.00048 29.7 0.6 20 4-23 112-132 (165)
25 TIGR02543 List_Bact_rpt Lister 28.7 20 0.00044 23.2 0.1 10 15-24 8-17 (44)
26 PF14488 DUF4434: Domain of un 27.4 69 0.0015 26.0 3.1 37 66-104 116-152 (166)
27 COG5508 Uncharacterized conser 27.1 33 0.00072 25.7 1.1 26 20-45 57-82 (84)
28 KOG3540|consensus 27.0 27 0.00058 34.1 0.7 18 1-19 172-194 (615)
29 COG2998 TupB ABC-type tungstat 26.3 59 0.0013 29.1 2.6 51 15-65 169-255 (280)
30 TIGR02619 putative CRISPR-asso 23.0 76 0.0017 25.7 2.5 26 149-174 36-61 (149)
31 KOG1329|consensus 20.2 74 0.0016 32.9 2.3 68 13-83 256-333 (887)
No 1
>cd00795 NOS_oxygenase_euk Nitric oxide synthase (NOS) eukaryotic oxygenase domain. NOS produces nitric oxide (NO) by catalyzing a five-electron heme-based oxidation of a guanidine nitrogen of L-arginine to L-citrulline via two successive monooxygenation reactions producing N(omega)-hydroxy-L-arginine (NHA) as an intermediate. In mammals, there are three distinct NOS isozymes: neuronal (nNOS or NOS-1), cytokine-inducible (iNOS or NOS-2) and endothelial (eNOS or NOS-3) . Nitric oxide synthases are homodimers. In eukaryotes, each monomer has an N-terminal oxygenase domain, which binds to the substrate L-Arg, zinc, and to the cofactors heme and 5.6.7.8-(6R)-tetrahydrobiopterin (BH4) . Eukaryotic NOS's also have a C-terminal electron supplying reductase region, which is homologous to cytochrome P450 reductase and binds NADH, FAD and FMN.
Probab=100.00 E-value=1.6e-54 Score=389.94 Aligned_cols=107 Identities=50% Similarity=0.882 Sum_probs=105.4
Q ss_pred CcccccceecccCCcCccccccccccccCCcccccccccC----------------------------------CCceEe
Q psy8546 1 MMFDCGGLQFTAAPFNGWYMSTEIGCRDLCDTKRYNICEN----------------------------------RNTTIV 46 (177)
Q Consensus 1 m~l~~gg~~~~a~pfngwym~tEIg~R~~~d~~ryn~l~~----------------------------------~~vti~ 46 (177)
|+||||||+||||||||||||||||+|||||++||||||. +|||||
T Consensus 271 M~l~iGGi~y~aaPFNGWYM~TEIgaRNl~D~~RYn~L~~VA~~mGlDT~~~~sLWkDrAlvElN~AVLhSF~~~gVtIv 350 (412)
T cd00795 271 MLLEIGGLEFTACPFNGWYMGTEIGVRDLCDQQRYNILEEVAKKMGLDTRKTSSLWKDKALVEINVAVLHSFQKANVTIV 350 (412)
T ss_pred ceeeeCCEeecCCCcccceechhhhcccccchhhhhhHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHHHHHCCceEe
Confidence 8999999999999999999999999999999999999999 999999
Q ss_pred echhHHHHHHHHHHHHhhhcCCCCccceEeeccccccchhhhhhhhhhhhHHHHHhhc-cccccccccccCCC
Q psy8546 47 DHHSAAEQFMKHYENEQRLRNGCPFNGWYMSTEIGCRDLCDTKRAVKFTSKLFGRALS-RRIKATVLYATETG 118 (177)
Q Consensus 47 dhhta~~~f~~~~~~e~~~~~~~P~nw~wm~ppIs~rnf~d~~ry~~lts~lfhk~ma-~rlkptilYqtet~ 118 (177)
||||||+|||+|+++|+++||+||+||+|++||+|++ ++ ++||+.|. +.++|+|+||+++|
T Consensus 351 DHHTas~~F~~~~~~E~~~~r~~pgdW~WlvPP~S~s----------~t-pvfH~~~~n~~~~P~f~yq~~~w 412 (412)
T cd00795 351 DHHSASESFMKHMENEYRARGGCPADWVWIVPPMSGS----------IT-PVFHQEMLNYVLSPSYEYQPDPW 412 (412)
T ss_pred cchHHHHHHHHHHHHHHHhCCCCCCCceeEcCCCCcc----------cc-chhhhhhhccccCCCcccCCCCC
Confidence 9999999999999999999999999999999999999 88 99999999 99999999999887
No 2
>cd00794 NOS_oxygenase_prok Nitric oxide synthase (NOS) prokaryotic oxygenase domain. NOS produces nitric oxide (NO) by catalyzing a five-electron heme-based oxidation of a guanidine nitrogen of L-arginine to L-citrulline via two successive monooxygenation reactions producing N(omega)-hydroxy-L-arginine (NHA) as an intermediate. Nitric oxide synthases are homodimers. Most prokaryotes produce NO as a byproduct of denitrification, using a completely different set of enzymes than NOS. However, a few prokaryotes also have a NOS, consisting solely of the NOS oxygenase domain. Prokaryotic NOS binds to the substrate L-Arg, zinc, and to the cofactors heme and tetrahydrofolate.
Probab=100.00 E-value=3.7e-54 Score=382.06 Aligned_cols=104 Identities=37% Similarity=0.655 Sum_probs=102.3
Q ss_pred CcccccceecccCCcCccccccccccccCCcccccccccC----------------------------------CCceEe
Q psy8546 1 MMFDCGGLQFTAAPFNGWYMSTEIGCRDLCDTKRYNICEN----------------------------------RNTTIV 46 (177)
Q Consensus 1 m~l~~gg~~~~a~pfngwym~tEIg~R~~~d~~ryn~l~~----------------------------------~~vti~ 46 (177)
|+||||||+||||||||||||||||+|||||++||||||+ +|||||
T Consensus 215 M~l~iGGi~y~aaPFNGWYM~TEIgaRNl~D~~RYn~L~~VA~~mglDT~~~~sLWkDrAlvElN~AVlhSF~~~gVtIv 294 (353)
T cd00794 215 MDLEIGGIHYPAAPFNGWYMGTEIGARNLADEYRYNLLPKVAEALGLDTLKNRSLWKDRALVELNVAVLHSFKKAGVSIV 294 (353)
T ss_pred ceeeeCCEeecCCCcccceechhhhhhcccchhhhHhHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHHCCceEe
Confidence 8999999999999999999999999999999999999999 999999
Q ss_pred echhHHHHHHHHHHHHhhhcCCCCccceEeeccccccchhhhhhhhhhhhHHHHHhhc-ccccccccccc
Q psy8546 47 DHHSAAEQFMKHYENEQRLRNGCPFNGWYMSTEIGCRDLCDTKRAVKFTSKLFGRALS-RRIKATVLYAT 115 (177)
Q Consensus 47 dhhta~~~f~~~~~~e~~~~~~~P~nw~wm~ppIs~rnf~d~~ry~~lts~lfhk~ma-~rlkptilYqt 115 (177)
||||||+|||+|+++|+++||+||+||+|++||+|++ +| ++||+.|. ..++|+|+||+
T Consensus 295 DHHTas~~F~~~~~~E~~~gr~~~~dW~WlvPP~S~s----------~t-pvfH~~~~n~~~~P~f~yq~ 353 (353)
T cd00794 295 DHHTAAKQFERFEEREARAGRKVTGKWSWLIPPLSPA----------TT-HIFHRGYDNTEVHPNFFYQK 353 (353)
T ss_pred cchHHHHHHHHHHHHHHHhCCCCCCCceeEcCCCCcc----------cc-chHhhhhhccccCCCCccCC
Confidence 9999999999999999999999999999999999999 88 99999999 99999999984
No 3
>cd00575 NOS_oxygenase Nitric oxide synthase (NOS) produces nitric oxide (NO) by catalyzing a five-electron heme-based oxidation of a guanidine nitrogen of L-arginine to L-citrulline via two successive monooxygenation reactions producing N(omega)-hydroxy-L-arginine (NHA) as an intermediate. In mammals, there are three distinct NOS isozymes: neuronal (nNOS or NOS-1), cytokine-inducible (iNOS or NOS-2) and endothelial (eNOS or NOS-3) . Nitric oxide synthases are homodimers. In eukaryotes, each monomer has an N-terminal oxygenase domain which binds to the substrate L-Arg, zinc, and to the cofactors heme and 5.6.7.8-(6R)-tetrahydrobiopterin (BH4) . Eukaryotic NOSs also have a C-terminal electron supplying reductase region, which is homologous to cytochrome P450 reductase and binds NADH, FAD and FMN. While prokaryotes can produce NO as a byproduct of denitrification, using a completely different set of enzymes than NOS, a few prokaryotes also have a NOS which consists solely of the NOS oxy
Probab=100.00 E-value=4.9e-54 Score=381.63 Aligned_cols=104 Identities=50% Similarity=0.924 Sum_probs=102.3
Q ss_pred CcccccceecccCCcCccccccccccccCCcccccccccC----------------------------------CCceEe
Q psy8546 1 MMFDCGGLQFTAAPFNGWYMSTEIGCRDLCDTKRYNICEN----------------------------------RNTTIV 46 (177)
Q Consensus 1 m~l~~gg~~~~a~pfngwym~tEIg~R~~~d~~ryn~l~~----------------------------------~~vti~ 46 (177)
|+||||||+||||||||||||||||+|||||++||||||. +|||||
T Consensus 218 M~l~iGGi~y~aaPFNGWYM~TEIgaRnl~D~~RYn~L~~vA~~mglDT~~~~sLWkDrAlvElN~AVlhSF~~~gVtIv 297 (356)
T cd00575 218 MLLEIGGLEFPAAPFNGWYMGTEIGVRNLCDTQRYNILEKVARKMGLDTRKNSSLWKDRALVELNVAVLHSFQKAGVTIV 297 (356)
T ss_pred ceeeeCCEeecCCCcccceechhhhhccccchhhhhhHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHHCCceEe
Confidence 8999999999999999999999999999999999999999 999999
Q ss_pred echhHHHHHHHHHHHHhhhcCCCCccceEeeccccccchhhhhhhhhhhhHHHHHhhc-ccccccccccc
Q psy8546 47 DHHSAAEQFMKHYENEQRLRNGCPFNGWYMSTEIGCRDLCDTKRAVKFTSKLFGRALS-RRIKATVLYAT 115 (177)
Q Consensus 47 dhhta~~~f~~~~~~e~~~~~~~P~nw~wm~ppIs~rnf~d~~ry~~lts~lfhk~ma-~rlkptilYqt 115 (177)
||||||+|||+|+++|+++||+||+||+|++||||++ +| ++||+.|. ..++|+|+||+
T Consensus 298 DHHTas~~F~~~~~~E~~~~r~~~gdW~WlvPP~S~s----------~t-pvfH~~~~n~~~~P~f~yq~ 356 (356)
T cd00575 298 DHHTAAESFMKHLENEYRARGGCPADWVWLVPPMSGS----------LT-PVFHQEMLNYVLSPSFFYQP 356 (356)
T ss_pred cchHHHHHHHHHHHHHHHcCCCCCCCceeEcCCCCcc----------cc-chhhhhhcccccCCCCccCC
Confidence 9999999999999999999999999999999999999 88 99999999 99999999984
No 4
>PF02898 NO_synthase: Nitric oxide synthase, oxygenase domain; InterPro: IPR004030 Nitric oxide synthase (1.14.13.39 from EC) (NOS) enzymes produce nitric oxide (NO) by catalysing a five-electron oxidation of a guanidino nitrogen of L-arginine (L-Arg). Oxidation of L-Arg to L-citrulline occurs via two successive monooxygenation reactions producing N(omega)-hydroxy-L-arginine as an intermediate. 2 mol of O(2) and 1.5 mol of NADPH are consumed per mole of NO formed []. Arginine-derived NO synthesis has been identified in mammals, fish, birds, invertebrates, plants, and bacteria []. Best studied are mammals, where three distinct genes encode NOS isozymes: neuronal (nNOS or NOS-1), cytokine-inducible (iNOS or NOS-2) and endothelial (eNOS or NOS-3) []. iNOS and nNOS are soluble and found predominantly in the cytosol, while eNOS is membrane associated. The enzymes exist as homodimers, each monomer consisting of two major domains: an N-terminal oxygenase domain, which belongs to the class of haem-thiolate proteins, and a C-terminal reductase domain, which is homologous to NADPH:P450 reductase (1.6.2.4 from EC). The interdomain linker between the oxygenase and reductase domains contains a calmodulin (CaM)-binding sequence. NOSs are the only enzymes known to simultaneously require five bound cofactors animal NOS isozymes are catalytically self-sufficient. The electron flow in the NO synthase reaction is: NADPH --> FAD --> FMN --> haem --> O(2). eNOS localisation to endothelial membranes is mediated by cotranslational N-terminal myristoylation and post-translational palmitoylation []. The subcellular localisation of nNOS in skeletal muscle is mediated by anchoring of nNOS to dystrophin. nNOS contains an additional N-terminal domain, the PDZ domain []. Some bacteria, like Bacillus halodurans, Bacillus subtilis or Deinococcus radiodurans, contain homologs of NOS oxygenase domain. The pattern is directed against the N-terminal haem binding site. This entry represents the oxygenase domain of NOS.; GO: 0004517 nitric-oxide synthase activity, 0006809 nitric oxide biosynthetic process, 0055114 oxidation-reduction process; PDB: 2FBZ_X 2AMO_A 2AN0_A 1M7V_A 2FC1_A 2FC2_B 1M7Z_A 2AN2_A 2ORS_A 1QW5_B ....
Probab=100.00 E-value=5e-55 Score=390.47 Aligned_cols=113 Identities=42% Similarity=0.748 Sum_probs=94.6
Q ss_pred CcccccceecccCCcCccccccccccccCCcccccccccC----------------------------------CCceEe
Q psy8546 1 MMFDCGGLQFTAAPFNGWYMSTEIGCRDLCDTKRYNICEN----------------------------------RNTTIV 46 (177)
Q Consensus 1 m~l~~gg~~~~a~pfngwym~tEIg~R~~~d~~ryn~l~~----------------------------------~~vti~ 46 (177)
|+||||||+||||||||||||||||+|||||++||||||. +|||||
T Consensus 225 M~LeiGGi~y~aaPFNGWYMgTEIgaRnl~D~~RYn~L~~vA~~mgldt~~~~sLWkDrAlvElN~AVLhSf~~~gVtiv 304 (372)
T PF02898_consen 225 MRLEIGGIQYPAAPFNGWYMGTEIGARNLADTDRYNMLPAVAKKMGLDTSSNSSLWKDRALVELNVAVLHSFQKAGVTIV 304 (372)
T ss_dssp EEEEETTEEESS--EE--EEHHHHHTHHHHSTTTTHTHHHHHHHTTSSTTSGGGTHHHHHHHHHHHHHHHHHHHTT--EE
T ss_pred CeeeeCCEecccCCcccceeechhccccccChhHHHhHHHHHHHhCcccCcchhhhhhHHHHHHHHHHHHHhccCCceEc
Confidence 8999999999999999999999999999999999999999 999999
Q ss_pred echhHHHHHHHHHHHHhhhcCCCCccceEeeccccccchhhhhhhhhhhhHHHHHhhc-cccccccccccCCCcchhHH
Q psy8546 47 DHHSAAEQFMKHYENEQRLRNGCPFNGWYMSTEIGCRDLCDTKRAVKFTSKLFGRALS-RRIKATVLYATETGKSELYA 124 (177)
Q Consensus 47 dhhta~~~f~~~~~~e~~~~~~~P~nw~wm~ppIs~rnf~d~~ry~~lts~lfhk~ma-~rlkptilYqtet~ks~~wk 124 (177)
||||||+|||+|+++|+++||+||+||+|++||+|++ +| ++||+.|. +.++|+|+||+++|+.|.|+
T Consensus 305 DHHtas~~F~~~~~~E~~~~r~~p~dW~WlvPP~S~s----------~T-pvfH~~~~n~~l~P~f~yq~~~w~~h~w~ 372 (372)
T PF02898_consen 305 DHHTASEQFMRFEENEERAGRGCPGDWSWLVPPMSGS----------TT-PVFHQEYLNYILKPNFFYQPDPWKTHVWK 372 (372)
T ss_dssp SHHHHHHHHHHHHHHHHHHHS--B--HHHHS-SSSGG----------GS-GGGGBTEBBEBESSEEEE---CTGC---S
T ss_pred cccccHHHHHHHHHHHHHcCCCCCCCccccCCCCccc----------cc-chhhccccccccCCCceecCchHhhccCC
Confidence 9999999999999999999999999999999999999 88 99999999 99999999999999999995
No 5
>COG4362 Nitric oxide synthase, oxygenase domain [Inorganic ion transport and metabolism / Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-46 Score=325.14 Aligned_cols=110 Identities=35% Similarity=0.630 Sum_probs=107.3
Q ss_pred CcccccceecccCCcCccccccccccccCCcccccccccC----------------------------------CCceEe
Q psy8546 1 MMFDCGGLQFTAAPFNGWYMSTEIGCRDLCDTKRYNICEN----------------------------------RNTTIV 46 (177)
Q Consensus 1 m~l~~gg~~~~a~pfngwym~tEIg~R~~~d~~ryn~l~~----------------------------------~~vti~ 46 (177)
|.||||||.|||||||||||+||||+|||+|++|||+||. .||+||
T Consensus 209 M~LeiGGihyp~ApFnGWYm~TEIgaRnlaD~~RYd~L~kvA~a~gldt~kn~tlwkDrALVELN~AvlhSfkkeGVsiv 288 (355)
T COG4362 209 MHLEIGGIHYPAAPFNGWYMGTEIGARNLADEGRYDQLPKVARALGLDTSKNRTLWKDRALVELNVAVLHSFKKEGVSIV 288 (355)
T ss_pred ceeeeccEeccCcCccceeeeeehhhhhccchhhhHHHHHHHHHhccccccccchhhhhHHHHHhHHHHHHHhhcCceee
Confidence 8999999999999999999999999999999999999998 999999
Q ss_pred echhHHHHHHHHHHHHhhhcCCCCccceEeeccccccchhhhhhhhhhhhHHHHHhhc-cccccccccccCCCcch
Q psy8546 47 DHHSAAEQFMKHYENEQRLRNGCPFNGWYMSTEIGCRDLCDTKRAVKFTSKLFGRALS-RRIKATVLYATETGKSE 121 (177)
Q Consensus 47 dhhta~~~f~~~~~~e~~~~~~~P~nw~wm~ppIs~rnf~d~~ry~~lts~lfhk~ma-~rlkptilYqtet~ks~ 121 (177)
|||||+.||.+|+++|+++||.+.+.|+|++||+|+. +| ++||+.+. +.++|+++||..|+++.
T Consensus 289 DHhTaa~qf~rFEe~Ea~agRkvtGkWsWLiPPlSPa----------tT-~i~h~~Yd~~~~~Pnffyq~~p~~~~ 353 (355)
T COG4362 289 DHHTAAKQFVRFEEREARAGRKVTGKWSWLIPPLSPA----------TT-HIFHRRYDNREVSPNFFYQRKPYETP 353 (355)
T ss_pred hhhHHHHHHHHHHHHHHHhCCcccceeeeecCCCCcc----------cc-chhhhcccccccCccceecCCCCCCC
Confidence 9999999999999999999999999999999999999 88 99999999 99999999999998764
No 6
>cd00794 NOS_oxygenase_prok Nitric oxide synthase (NOS) prokaryotic oxygenase domain. NOS produces nitric oxide (NO) by catalyzing a five-electron heme-based oxidation of a guanidine nitrogen of L-arginine to L-citrulline via two successive monooxygenation reactions producing N(omega)-hydroxy-L-arginine (NHA) as an intermediate. Nitric oxide synthases are homodimers. Most prokaryotes produce NO as a byproduct of denitrification, using a completely different set of enzymes than NOS. However, a few prokaryotes also have a NOS, consisting solely of the NOS oxygenase domain. Prokaryotic NOS binds to the substrate L-Arg, zinc, and to the cofactors heme and tetrahydrofolate.
Probab=99.67 E-value=2e-17 Score=147.92 Aligned_cols=74 Identities=31% Similarity=0.465 Sum_probs=65.0
Q ss_pred hcCCCCccceEeeccccccchhhhhhhhhhhhHHHHHhhccccccccccccCCCcchhHHHH---HHHHHHHHHHHHHHH
Q psy8546 65 LRNGCPFNGWYMSTEIGCRDLCDTKRAVKFTSKLFGRALSRRIKATVLYATETGKSELYAKK---LGELAVKFTSKLFGR 141 (177)
Q Consensus 65 ~~~~~P~nw~wm~ppIs~rnf~d~~ry~~lts~lfhk~ma~rlkptilYqtet~ks~~wk~k---eln~AVl~S~kl~~~ 141 (177)
...+||||||||++|||+|||+|..|||+++ .+++.|+ ++++ ..+++|||+ |||.||+|||+..|+
T Consensus 223 ~y~aaPFNGWYM~TEIgaRNl~D~~RYn~L~--~VA~~mg--lDT~-------~~~sLWkDrAlvElN~AVlhSF~~~gV 291 (353)
T cd00794 223 HYPAAPFNGWYMGTEIGARNLADEYRYNLLP--KVAEALG--LDTL-------KNRSLWKDRALVELNVAVLHSFKKAGV 291 (353)
T ss_pred eecCCCcccceechhhhhhcccchhhhHhHH--HHHHHhC--CCCC-------CCcchHHHHHHHHHHHHHHHHHHHCCc
Confidence 3568999999999999999999999999999 6688898 5553 568999995 999999999999999
Q ss_pred HhhcceeE
Q psy8546 142 ALSRRIKA 149 (177)
Q Consensus 142 a~~~rVka 149 (177)
.+.+..-|
T Consensus 292 tIvDHHTa 299 (353)
T cd00794 292 SIVDHHTA 299 (353)
T ss_pred eEecchHH
Confidence 98887754
No 7
>cd00575 NOS_oxygenase Nitric oxide synthase (NOS) produces nitric oxide (NO) by catalyzing a five-electron heme-based oxidation of a guanidine nitrogen of L-arginine to L-citrulline via two successive monooxygenation reactions producing N(omega)-hydroxy-L-arginine (NHA) as an intermediate. In mammals, there are three distinct NOS isozymes: neuronal (nNOS or NOS-1), cytokine-inducible (iNOS or NOS-2) and endothelial (eNOS or NOS-3) . Nitric oxide synthases are homodimers. In eukaryotes, each monomer has an N-terminal oxygenase domain which binds to the substrate L-Arg, zinc, and to the cofactors heme and 5.6.7.8-(6R)-tetrahydrobiopterin (BH4) . Eukaryotic NOSs also have a C-terminal electron supplying reductase region, which is homologous to cytochrome P450 reductase and binds NADH, FAD and FMN. While prokaryotes can produce NO as a byproduct of denitrification, using a completely different set of enzymes than NOS, a few prokaryotes also have a NOS which consists solely of the NOS oxy
Probab=99.66 E-value=3.2e-17 Score=146.73 Aligned_cols=74 Identities=32% Similarity=0.536 Sum_probs=64.8
Q ss_pred hcCCCCccceEeeccccccchhhhhhhhhhhhHHHHHhhccccccccccccCCCcchhHHHH---HHHHHHHHHHHHHHH
Q psy8546 65 LRNGCPFNGWYMSTEIGCRDLCDTKRAVKFTSKLFGRALSRRIKATVLYATETGKSELYAKK---LGELAVKFTSKLFGR 141 (177)
Q Consensus 65 ~~~~~P~nw~wm~ppIs~rnf~d~~ry~~lts~lfhk~ma~rlkptilYqtet~ks~~wk~k---eln~AVl~S~kl~~~ 141 (177)
...+||||||||++|||+|||+|..|||+++ .+++.|+ ++++ ..+++|||+ |||.||+|||+..|+
T Consensus 226 ~y~aaPFNGWYM~TEIgaRnl~D~~RYn~L~--~vA~~mg--lDT~-------~~~sLWkDrAlvElN~AVlhSF~~~gV 294 (356)
T cd00575 226 EFPAAPFNGWYMGTEIGVRNLCDTQRYNILE--KVARKMG--LDTR-------KNSSLWKDRALVELNVAVLHSFQKAGV 294 (356)
T ss_pred eecCCCcccceechhhhhccccchhhhhhHH--HHHHHhC--CCCC-------CCcchHHHHHHHHHHHHHHHHHHHCCc
Confidence 3567999999999999999999999999999 6688898 4443 468899995 999999999999999
Q ss_pred HhhcceeE
Q psy8546 142 ALSRRIKA 149 (177)
Q Consensus 142 a~~~rVka 149 (177)
.+.+..-|
T Consensus 295 tIvDHHTa 302 (356)
T cd00575 295 TIVDHHTA 302 (356)
T ss_pred eEecchHH
Confidence 98887764
No 8
>cd00795 NOS_oxygenase_euk Nitric oxide synthase (NOS) eukaryotic oxygenase domain. NOS produces nitric oxide (NO) by catalyzing a five-electron heme-based oxidation of a guanidine nitrogen of L-arginine to L-citrulline via two successive monooxygenation reactions producing N(omega)-hydroxy-L-arginine (NHA) as an intermediate. In mammals, there are three distinct NOS isozymes: neuronal (nNOS or NOS-1), cytokine-inducible (iNOS or NOS-2) and endothelial (eNOS or NOS-3) . Nitric oxide synthases are homodimers. In eukaryotes, each monomer has an N-terminal oxygenase domain, which binds to the substrate L-Arg, zinc, and to the cofactors heme and 5.6.7.8-(6R)-tetrahydrobiopterin (BH4) . Eukaryotic NOS's also have a C-terminal electron supplying reductase region, which is homologous to cytochrome P450 reductase and binds NADH, FAD and FMN.
Probab=99.64 E-value=6.9e-17 Score=146.67 Aligned_cols=74 Identities=32% Similarity=0.551 Sum_probs=64.7
Q ss_pred hcCCCCccceEeeccccccchhhhhhhhhhhhHHHHHhhccccccccccccCCCcchhHHHH---HHHHHHHHHHHHHHH
Q psy8546 65 LRNGCPFNGWYMSTEIGCRDLCDTKRAVKFTSKLFGRALSRRIKATVLYATETGKSELYAKK---LGELAVKFTSKLFGR 141 (177)
Q Consensus 65 ~~~~~P~nw~wm~ppIs~rnf~d~~ry~~lts~lfhk~ma~rlkptilYqtet~ks~~wk~k---eln~AVl~S~kl~~~ 141 (177)
...+||||||||++|||+|||+|..|||+++ .+++.|+ ++++ ..+++|||+ |||.||+|||+..|+
T Consensus 279 ~y~aaPFNGWYM~TEIgaRNl~D~~RYn~L~--~VA~~mG--lDT~-------~~~sLWkDrAlvElN~AVLhSF~~~gV 347 (412)
T cd00795 279 EFTACPFNGWYMGTEIGVRDLCDQQRYNILE--EVAKKMG--LDTR-------KTSSLWKDKALVEINVAVLHSFQKANV 347 (412)
T ss_pred eecCCCcccceechhhhcccccchhhhhhHH--HHHHHhC--CCCC-------CCcchhHHHHHHHHHHHHHHHHHHCCc
Confidence 3577999999999999999999999999999 6688898 4443 458899995 999999999999999
Q ss_pred HhhcceeE
Q psy8546 142 ALSRRIKA 149 (177)
Q Consensus 142 a~~~rVka 149 (177)
.+.+..-|
T Consensus 348 tIvDHHTa 355 (412)
T cd00795 348 TIVDHHSA 355 (412)
T ss_pred eEecchHH
Confidence 98887765
No 9
>PF02898 NO_synthase: Nitric oxide synthase, oxygenase domain; InterPro: IPR004030 Nitric oxide synthase (1.14.13.39 from EC) (NOS) enzymes produce nitric oxide (NO) by catalysing a five-electron oxidation of a guanidino nitrogen of L-arginine (L-Arg). Oxidation of L-Arg to L-citrulline occurs via two successive monooxygenation reactions producing N(omega)-hydroxy-L-arginine as an intermediate. 2 mol of O(2) and 1.5 mol of NADPH are consumed per mole of NO formed []. Arginine-derived NO synthesis has been identified in mammals, fish, birds, invertebrates, plants, and bacteria []. Best studied are mammals, where three distinct genes encode NOS isozymes: neuronal (nNOS or NOS-1), cytokine-inducible (iNOS or NOS-2) and endothelial (eNOS or NOS-3) []. iNOS and nNOS are soluble and found predominantly in the cytosol, while eNOS is membrane associated. The enzymes exist as homodimers, each monomer consisting of two major domains: an N-terminal oxygenase domain, which belongs to the class of haem-thiolate proteins, and a C-terminal reductase domain, which is homologous to NADPH:P450 reductase (1.6.2.4 from EC). The interdomain linker between the oxygenase and reductase domains contains a calmodulin (CaM)-binding sequence. NOSs are the only enzymes known to simultaneously require five bound cofactors animal NOS isozymes are catalytically self-sufficient. The electron flow in the NO synthase reaction is: NADPH --> FAD --> FMN --> haem --> O(2). eNOS localisation to endothelial membranes is mediated by cotranslational N-terminal myristoylation and post-translational palmitoylation []. The subcellular localisation of nNOS in skeletal muscle is mediated by anchoring of nNOS to dystrophin. nNOS contains an additional N-terminal domain, the PDZ domain []. Some bacteria, like Bacillus halodurans, Bacillus subtilis or Deinococcus radiodurans, contain homologs of NOS oxygenase domain. The pattern is directed against the N-terminal haem binding site. This entry represents the oxygenase domain of NOS.; GO: 0004517 nitric-oxide synthase activity, 0006809 nitric oxide biosynthetic process, 0055114 oxidation-reduction process; PDB: 2FBZ_X 2AMO_A 2AN0_A 1M7V_A 2FC1_A 2FC2_B 1M7Z_A 2AN2_A 2ORS_A 1QW5_B ....
Probab=99.56 E-value=7.5e-16 Score=138.90 Aligned_cols=73 Identities=30% Similarity=0.524 Sum_probs=58.0
Q ss_pred cCCCCccceEeeccccccchhhhhhhhhhhhHHHHHhhccccccccccccCCCcchhHHHH---HHHHHHHHHHHHHHHH
Q psy8546 66 RNGCPFNGWYMSTEIGCRDLCDTKRAVKFTSKLFGRALSRRIKATVLYATETGKSELYAKK---LGELAVKFTSKLFGRA 142 (177)
Q Consensus 66 ~~~~P~nw~wm~ppIs~rnf~d~~ry~~lts~lfhk~ma~rlkptilYqtet~ks~~wk~k---eln~AVl~S~kl~~~a 142 (177)
..+||||||||++|||+|||+|..|||+++ .+++.|+ +++. ..+++|||+ |||.||+|||+..|+.
T Consensus 234 y~aaPFNGWYMgTEIgaRnl~D~~RYn~L~--~vA~~mg--ldt~-------~~~sLWkDrAlvElN~AVLhSf~~~gVt 302 (372)
T PF02898_consen 234 YPAAPFNGWYMGTEIGARNLADTDRYNMLP--AVAKKMG--LDTS-------SNSSLWKDRALVELNVAVLHSFQKAGVT 302 (372)
T ss_dssp ESS--EE--EEHHHHHTHHHHSTTTTHTHH--HHHHHTT--SSTT-------SGGGTHHHHHHHHHHHHHHHHHHHTT--
T ss_pred cccCCcccceeechhccccccChhHHHhHH--HHHHHhC--cccC-------cchhhhhhHHHHHHHHHHHHHhccCCce
Confidence 567999999999999999999999999999 7788898 4443 458899995 9999999999999999
Q ss_pred hhcceeE
Q psy8546 143 LSRRIKA 149 (177)
Q Consensus 143 ~~~rVka 149 (177)
+.+..-|
T Consensus 303 ivDHHta 309 (372)
T PF02898_consen 303 IVDHHTA 309 (372)
T ss_dssp EESHHHH
T ss_pred Ecccccc
Confidence 8877654
No 10
>COG4362 Nitric oxide synthase, oxygenase domain [Inorganic ion transport and metabolism / Amino acid transport and metabolism]
Probab=99.43 E-value=4.7e-14 Score=124.10 Aligned_cols=75 Identities=32% Similarity=0.489 Sum_probs=63.8
Q ss_pred hhcCCCCccceEeeccccccchhhhhhhhhhhhHHHHHhhccccccccccccCCCcchhHHHH---HHHHHHHHHHHHHH
Q psy8546 64 RLRNGCPFNGWYMSTEIGCRDLCDTKRAVKFTSKLFGRALSRRIKATVLYATETGKSELYAKK---LGELAVKFTSKLFG 140 (177)
Q Consensus 64 ~~~~~~P~nw~wm~ppIs~rnf~d~~ry~~lts~lfhk~ma~rlkptilYqtet~ks~~wk~k---eln~AVl~S~kl~~ 140 (177)
-.++.+|||||||++|||+|||+|..|||+++ -+++.|+ +++. .++.+|+|+ |||.||+||++.-|
T Consensus 216 ihyp~ApFnGWYm~TEIgaRnlaD~~RYd~L~--kvA~a~g--ldt~-------kn~tlwkDrALVELN~AvlhSfkkeG 284 (355)
T COG4362 216 IHYPAAPFNGWYMGTEIGARNLADEGRYDQLP--KVARALG--LDTS-------KNRTLWKDRALVELNVAVLHSFKKEG 284 (355)
T ss_pred EeccCcCccceeeeeehhhhhccchhhhHHHH--HHHHHhc--cccc-------cccchhhhhHHHHHhHHHHHHHhhcC
Confidence 35677999999999999999999999999999 5578887 4443 568899995 99999999999999
Q ss_pred HHhhcceeE
Q psy8546 141 RALSRRIKA 149 (177)
Q Consensus 141 ~a~~~rVka 149 (177)
+.+.+..-|
T Consensus 285 VsivDHhTa 293 (355)
T COG4362 285 VSIVDHHTA 293 (355)
T ss_pred ceeehhhHH
Confidence 988776544
No 11
>KOG1158|consensus
Probab=98.06 E-value=2.1e-06 Score=82.88 Aligned_cols=51 Identities=43% Similarity=0.631 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcceeEEEEEecCCcchHHHHHHHHHHhccccCC
Q psy8546 126 KLGELAVKFTSKLFGRALSRRIKATVLYATETGKSELYAKKLGELFGHAFHS 177 (177)
Q Consensus 126 keln~AVl~S~kl~~~a~~~rVkatilyatetg~se~~a~~l~~~f~~~f~~ 177 (177)
+.+..|+.++..++...+..+++++|+|+||||++|.||+.|+++| ++|+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~tgtae~~a~~l~~~~-~~~~~ 76 (645)
T KOG1158|consen 26 KTSASAVKFSYSLKLKVKAKRVKATVLYGSQTGTAEDFAKRLSEIF-ARFEL 76 (645)
T ss_pred ccceeechhhhhHHHHhhccceeEEEEeccCCCCHHHHHHHHHHHh-hhccc
Confidence 4567899999999999999999999999999999999999999999 99974
No 12
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=94.30 E-value=0.035 Score=53.06 Aligned_cols=27 Identities=33% Similarity=0.580 Sum_probs=24.6
Q ss_pred ceeEEEEEecCCcchHHHHHHHHHHhc
Q psy8546 146 RIKATVLYATETGKSELYAKKLGELFG 172 (177)
Q Consensus 146 rVkatilyatetg~se~~a~~l~~~f~ 172 (177)
+.+++|+||||||.+|.+|+.|.+.+.
T Consensus 58 ~~~i~IlygSqTGnae~~A~~l~~~l~ 84 (597)
T TIGR01931 58 EKRVTILYGSQTGNARRLAKRLAEKLE 84 (597)
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHH
Confidence 467899999999999999999998875
No 13
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=93.89 E-value=0.048 Score=52.46 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=23.5
Q ss_pred eeEEEEEecCCcchHHHHHHHHHHhc
Q psy8546 147 IKATVLYATETGKSELYAKKLGELFG 172 (177)
Q Consensus 147 Vkatilyatetg~se~~a~~l~~~f~ 172 (177)
-+++|+||||||.+|.+|+.|.+.+.
T Consensus 62 ~~v~IlygSqTGnae~lA~~la~~l~ 87 (600)
T PRK10953 62 PGITLISASQTGNARRVAEQLRDDLL 87 (600)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHH
Confidence 46899999999999999999998774
No 14
>KOG1158|consensus
Probab=76.24 E-value=1.9 Score=42.44 Aligned_cols=60 Identities=37% Similarity=0.556 Sum_probs=48.4
Q ss_pred hhhhhhhhhhhhHHHHHhhccccccccccccCCCcchhHHHHHHHHHHHHHHHHHHHHhhcceeEEEEE
Q psy8546 85 LCDTKRAVKFTSKLFGRALSRRIKATVLYATETGKSELYAKKLGELAVKFTSKLFGRALSRRIKATVLY 153 (177)
Q Consensus 85 f~d~~ry~~lts~lfhk~ma~rlkptilYqtet~ks~~wk~keln~AVl~S~kl~~~a~~~rVkatily 153 (177)
|+.+.+++.++..++.+.+..+++++|+|.++++.++.+++.+ .+++ .++..++.|...|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~tgtae~~a~~l--------~~~~-~~~~~~~~~~~d~ 84 (645)
T KOG1158|consen 25 LKTSASAVKFSYSLKLKVKAKRVKATVLYGSQTGTAEDFAKRL--------SEIF-ARFELKVLKVADY 84 (645)
T ss_pred cccceeechhhhhHHHHhhccceeEEEEeccCCCCHHHHHHHH--------HHHh-hhccccceeecch
Confidence 6677777777778888888889999999999999999888665 5667 7788777666655
No 15
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=68.76 E-value=4.6 Score=39.33 Aligned_cols=29 Identities=34% Similarity=0.448 Sum_probs=24.7
Q ss_pred ceeEEEEEecCCcchHHHHHHHHHHhccc
Q psy8546 146 RIKATVLYATETGKSELYAKKLGELFGHA 174 (177)
Q Consensus 146 rVkatilyatetg~se~~a~~l~~~f~~~ 174 (177)
....+|||+|+||++|.+|..+.+-...+
T Consensus 47 ~~~~~il~~sqtG~a~~~A~~~a~~~~~~ 75 (587)
T COG0369 47 NKPITVLYGSQTGNAEGLAEELAKELEAA 75 (587)
T ss_pred CCceEEEEccCCccHHHHHHHHHHHHHhc
Confidence 45579999999999999999998876554
No 16
>PF14168 YjzC: YjzC-like protein
Probab=67.06 E-value=3.3 Score=28.90 Aligned_cols=17 Identities=47% Similarity=0.632 Sum_probs=14.6
Q ss_pred cCCcCccccccccccccCC
Q psy8546 12 AAPFNGWYMSTEIGCRDLC 30 (177)
Q Consensus 12 a~pfngwym~tEIg~R~~~ 30 (177)
-||=||.|| |||.|..-
T Consensus 12 kapn~G~Y~--EvG~~G~~ 28 (57)
T PF14168_consen 12 KAPNNGTYV--EVGERGGH 28 (57)
T ss_pred cCCCCceEE--EECCCCCc
Confidence 379999999 99988765
No 17
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=66.05 E-value=1.9 Score=35.03 Aligned_cols=25 Identities=28% Similarity=0.664 Sum_probs=20.3
Q ss_pred CcCccccccccccccCCcccccccc
Q psy8546 14 PFNGWYMSTEIGCRDLCDTKRYNIC 38 (177)
Q Consensus 14 pfngwym~tEIg~R~~~d~~ryn~l 38 (177)
+|-|||...||.-++..+..+++.|
T Consensus 120 sf~GWYip~E~~~~~~~~~~~~~~l 144 (166)
T PF14488_consen 120 SFYGWYIPYEIDDYNWNAPERFALL 144 (166)
T ss_pred CCceEEEecccCCcccchHHHHHHH
Confidence 7999999999997776666666554
No 18
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=47.34 E-value=16 Score=34.44 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=44.3
Q ss_pred eecccCCcCccccccccccccCCccc------------------ccccccC--------------------CCceEeech
Q psy8546 8 LQFTAAPFNGWYMSTEIGCRDLCDTK------------------RYNICEN--------------------RNTTIVDHH 49 (177)
Q Consensus 8 ~~~~a~pfngwym~tEIg~R~~~d~~------------------ryn~l~~--------------------~~vti~dhh 49 (177)
-.+..| .|||-||-.- .+||+.++ ||.--|+ +|++|-+-|
T Consensus 325 ~~~~lA-nNGWV~~~dp-l~dFA~~~S~~YLRREvIvWGDcVKLRYG~~peDsP~LW~~M~~Yt~~~A~iF~G~RiDNCH 402 (423)
T PF14701_consen 325 KKLALA-NNGWVWNADP-LVDFASPDSRAYLRREVIVWGDCVKLRYGSKPEDSPFLWKHMKEYTELMAKIFHGFRIDNCH 402 (423)
T ss_pred ceEEEE-eCCceeCCch-hhhhcCCcccceEEEEEEecCceeeecCCCCCCCCHHHHHHHHHHHHHHHHhcCeeeeecCC
Confidence 344433 8999999766 58888765 5555555 999999999
Q ss_pred hHHHHHHHHHHHHhhhcC
Q psy8546 50 SAAEQFMKHYENEQRLRN 67 (177)
Q Consensus 50 ta~~~f~~~~~~e~~~~~ 67 (177)
|.-....+|+-.|.|.-+
T Consensus 403 STPlhVaeylLd~AR~v~ 420 (423)
T PF14701_consen 403 STPLHVAEYLLDAARKVN 420 (423)
T ss_pred CCcHHHHHHHHHHHHhhC
Confidence 999999999988876533
No 19
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=46.82 E-value=18 Score=32.62 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=24.9
Q ss_pred cceeEEEEEecCCcchHHHHHHHHHHhc
Q psy8546 145 RRIKATVLYATETGKSELYAKKLGELFG 172 (177)
Q Consensus 145 ~rVkatilyatetg~se~~a~~l~~~f~ 172 (177)
..-++.|.|+|.||..|..|+.+++-+.
T Consensus 246 ~~~kv~IvY~S~~GnTe~mA~~ia~g~~ 273 (394)
T PRK11921 246 QENQVTILYDTMWNSTRRMAEAIAEGIK 273 (394)
T ss_pred CcCcEEEEEECCchHHHHHHHHHHHHHh
Confidence 4567899999999999999999988775
No 20
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=45.77 E-value=20 Score=33.66 Aligned_cols=28 Identities=14% Similarity=0.328 Sum_probs=25.0
Q ss_pred cceeEEEEEecCCcchHHHHHHHHHHhc
Q psy8546 145 RRIKATVLYATETGKSELYAKKLGELFG 172 (177)
Q Consensus 145 ~rVkatilyatetg~se~~a~~l~~~f~ 172 (177)
+.-|+.|.|+|-||..|..|+.+++-++
T Consensus 250 ~~~kv~IvY~S~~GnTe~mA~~ia~gl~ 277 (479)
T PRK05452 250 QEDRITIFYDTMSNNTRMMADAIAQGIA 277 (479)
T ss_pred CcCcEEEEEECCccHHHHHHHHHHHHHH
Confidence 4567899999999999999999998775
No 21
>PHA03351 tegument protein UL16; Provisional
Probab=44.76 E-value=4.3 Score=34.66 Aligned_cols=31 Identities=32% Similarity=0.547 Sum_probs=23.9
Q ss_pred cccccccccCCcccccccccC------------CCceEeechhHHH
Q psy8546 20 MSTEIGCRDLCDTKRYNICEN------------RNTTIVDHHSAAE 53 (177)
Q Consensus 20 m~tEIg~R~~~d~~ryn~l~~------------~~vti~dhhta~~ 53 (177)
-+||| |||.|-+ ||+|.. .--+|++.||+.+
T Consensus 98 n~t~i--rnfs~i~-~nilqdglkmr~vp~tklyt~rii~n~t~gr 140 (235)
T PHA03351 98 NDTEI--RNFSDIQ-TNILQDGLKMRHVPVTKLYTHRIINNHTAGR 140 (235)
T ss_pred CCcee--echhHHH-HHHHhccceeeecchhhheehhhhccccccc
Confidence 37898 9999875 899887 3446888888764
No 22
>PF04843 Herpes_teg_N: Herpesvirus tegument protein, N-terminal conserved region; InterPro: IPR006928 Herpesvirus UL36 encodes the largest herpes simplex virus protein, also designated VP1/2, which is a component of the virion tegument. The N-terminal domain, of approximately 500aa, encodes a ubiquitin-specific protease (USP) that belongs to MEROPS peptidase family C76 (UL36 deubiquitinylating peptidase, clan CA). It is conserved across the herpesviridae and accumulates as a cleavage product of UL36 during late viral replication []. The conservation of UL36-USP across all members of the herpesviridae and the absolute conservation of the active site residues imply that UL36-USP plays an important role the herpesvirus life cycle.
Probab=32.54 E-value=18 Score=29.82 Aligned_cols=40 Identities=28% Similarity=0.361 Sum_probs=29.3
Q ss_pred cccCCcCcccccccccccc-------CCcccccccccC-----------------CCceEeechh
Q psy8546 10 FTAAPFNGWYMSTEIGCRD-------LCDTKRYNICEN-----------------RNTTIVDHHS 50 (177)
Q Consensus 10 ~~a~pfngwym~tEIg~R~-------~~d~~ryn~l~~-----------------~~vti~dhht 50 (177)
|...|+|| +++||+..|. +.+..+|+..+. ..+-|-|.|+
T Consensus 87 ~~s~~~~G-~l~t~~~~~~~~~~~l~~~~~~~~~~~~~y~l~t~g~~~~av~~~~~~~yiFDPH~ 150 (172)
T PF04843_consen 87 YLSPPFNG-TLETQDPARYPCIGSLDFLLYAWYKRTPQYILVTIGALTIAVIRTGDRYYIFDPHS 150 (172)
T ss_pred EecCcccc-ccccccccccchhHhHHHHHHHhccCCCcEEEEEECCceEEEEEeCCcEEEECCCC
Confidence 45679999 9999999998 566666655554 5666677775
No 23
>PF14754 IFR3_antag: Papain-like auto-proteinase
Probab=32.13 E-value=13 Score=31.64 Aligned_cols=18 Identities=44% Similarity=0.776 Sum_probs=13.6
Q ss_pred CccccccccccccCCcccccccccC
Q psy8546 16 NGWYMSTEIGCRDLCDTKRYNICEN 40 (177)
Q Consensus 16 ngwym~tEIg~R~~~d~~ryn~l~~ 40 (177)
.|||-... -+.|||.|+-
T Consensus 76 igwyraak-------vtgrynflel 93 (249)
T PF14754_consen 76 IGWYRAAK-------VTGRYNFLEL 93 (249)
T ss_pred eeehhhhh-------hcchhhHHHH
Confidence 69995554 4689999886
No 24
>PHA02651 IL-1 receptor antagonist; Provisional
Probab=29.85 E-value=22 Score=29.66 Aligned_cols=20 Identities=35% Similarity=0.866 Sum_probs=15.1
Q ss_pred cccc-eecccCCcCccccccc
Q psy8546 4 DCGG-LQFTAAPFNGWYMSTE 23 (177)
Q Consensus 4 ~~gg-~~~~a~pfngwym~tE 23 (177)
|+|. .+|-.|.|.|||.+|=
T Consensus 112 ~sG~tstFESaafPgWfIsTs 132 (165)
T PHA02651 112 DNGHTSTFESVAFPGWFLCTS 132 (165)
T ss_pred cCCCceEEEecCCCCcEEEec
Confidence 4444 3577899999999984
No 25
>TIGR02543 List_Bact_rpt Listeria/Bacterioides repeat. This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria.
Probab=28.69 E-value=20 Score=23.21 Aligned_cols=10 Identities=40% Similarity=1.242 Sum_probs=7.5
Q ss_pred cCcccccccc
Q psy8546 15 FNGWYMSTEI 24 (177)
Q Consensus 15 fngwym~tEI 24 (177)
|.|||...+-
T Consensus 8 F~GWY~d~~~ 17 (44)
T TIGR02543 8 FDGWYGDSAF 17 (44)
T ss_pred eeeeEEcCCC
Confidence 8999976543
No 26
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=27.40 E-value=69 Score=25.96 Aligned_cols=37 Identities=24% Similarity=0.440 Sum_probs=29.2
Q ss_pred cCCCCccceEeeccccccchhhhhhhhhhhhHHHHHhhc
Q psy8546 66 RNGCPFNGWYMSTEIGCRDLCDTKRAVKFTSKLFGRALS 104 (177)
Q Consensus 66 ~~~~P~nw~wm~ppIs~rnf~d~~ry~~lts~lfhk~ma 104 (177)
+....|.|||+.-||+..++.+..+++.+. ... +.+.
T Consensus 116 g~h~sf~GWYip~E~~~~~~~~~~~~~~l~-~~l-k~~s 152 (166)
T PF14488_consen 116 GHHPSFYGWYIPYEIDDYNWNAPERFALLG-KYL-KQIS 152 (166)
T ss_pred cCCCCCceEEEecccCCcccchHHHHHHHH-HHH-HHhC
Confidence 334578899999999999999999999998 443 4443
No 27
>COG5508 Uncharacterized conserved small protein [Function unknown]
Probab=27.14 E-value=33 Score=25.75 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=21.4
Q ss_pred cccccccccCCcccccccccCCCceE
Q psy8546 20 MSTEIGCRDLCDTKRYNICENRNTTI 45 (177)
Q Consensus 20 m~tEIg~R~~~d~~ryn~l~~~~vti 45 (177)
+-.|||-|...|+-||.=-+..|.+|
T Consensus 57 ~pkEiGGrgGlePtRyGDWe~KGr~i 82 (84)
T COG5508 57 LPKEIGGRGGLEPTRYGDWEHKGRVI 82 (84)
T ss_pred cchhhCCCCCCCccccccccccceec
Confidence 34699999999999998777777654
No 28
>KOG3540|consensus
Probab=26.98 E-value=27 Score=34.12 Aligned_cols=18 Identities=39% Similarity=0.953 Sum_probs=14.4
Q ss_pred Cccccc-----ceecccCCcCccc
Q psy8546 1 MMFDCG-----GLQFTAAPFNGWY 19 (177)
Q Consensus 1 m~l~~g-----g~~~~a~pfngwy 19 (177)
|+|-|| |++|.||| |+=-
T Consensus 172 mLlPCg~D~F~GvEfVCCP-~~~~ 194 (615)
T KOG3540|consen 172 MLLPCGLDMFRGVEFVCCP-NDQT 194 (615)
T ss_pred ceeccccccccCceEEeCC-CCCC
Confidence 666776 99999999 8754
No 29
>COG2998 TupB ABC-type tungstate transport system, permease component [Coenzyme metabolism]
Probab=26.31 E-value=59 Score=29.12 Aligned_cols=51 Identities=25% Similarity=0.408 Sum_probs=36.6
Q ss_pred cCcccccc------------ccccccCCccc---ccccccC--------------CCceEeec-------hhHHHHHHHH
Q psy8546 15 FNGWYMST------------EIGCRDLCDTK---RYNICEN--------------RNTTIVDH-------HSAAEQFMKH 58 (177)
Q Consensus 15 fngwym~t------------EIg~R~~~d~~---ryn~l~~--------------~~vti~dh-------hta~~~f~~~ 58 (177)
++|||.++ |+.+=-|.|.. +|+-.|. .+|.||+. .++|+.|++|
T Consensus 169 ~~~wY~s~G~GMg~tL~~A~Ek~aytLtDrgTylaYr~r~~L~iv~~gd~~L~N~Ysvi~vNP~r~~~vny~~A~kfi~w 248 (280)
T COG2998 169 VKGWYISAGQGMGDTLNMANEKKAYTLTDRGTYLAYRNRPTLVIVLEGDPSLFNPYSVIAVNPKRVKGVNYTAATKFIEW 248 (280)
T ss_pred CCcceeecCcchHHHHHHhhhhceeEeeccceeeEecCccceEEEecCCccccCceeEEEEchhcCCCcCchHHHHHHHH
Confidence 67899654 66666677765 4555444 77888865 3899999999
Q ss_pred HHHHhhh
Q psy8546 59 YENEQRL 65 (177)
Q Consensus 59 ~~~e~~~ 65 (177)
+-+|.-+
T Consensus 249 ~~s~~gq 255 (280)
T COG2998 249 LMSEKGQ 255 (280)
T ss_pred HhhHHHH
Confidence 9888543
No 30
>TIGR02619 putative CRISPR-associated protein, APE2256 family. This model represents a conserved domain of about 150 amino acids found in at least five archaeal species and three bacterial species, exclusively in species with CRISPR (Clustered Regularly Interspaced Short Palidromic Repeats). In six of eight species, the member of this family is in the vicinity of a CRISPR/Cas locus.
Probab=22.98 E-value=76 Score=25.65 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=22.4
Q ss_pred EEEEEecCCcchHHHHHHHHHHhccc
Q psy8546 149 ATVLYATETGKSELYAKKLGELFGHA 174 (177)
Q Consensus 149 atilyatetg~se~~a~~l~~~f~~~ 174 (177)
-.+||+|+|+..+.-|+.|.+-|.+.
T Consensus 36 ~~~Ll~SDT~~G~~~a~ilk~yl~~~ 61 (149)
T TIGR02619 36 KAILYHSDTAQGRFCASILKRFLERE 61 (149)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 48999999999999999998877543
No 31
>KOG1329|consensus
Probab=20.16 E-value=74 Score=32.89 Aligned_cols=68 Identities=21% Similarity=0.346 Sum_probs=46.3
Q ss_pred CCcCcccc-----ccccccccCCcccccc-cccC---CCce-EeechhHHHHHHHHHHHHhhhcCCCCccceEeeccccc
Q psy8546 13 APFNGWYM-----STEIGCRDLCDTKRYN-ICEN---RNTT-IVDHHSAAEQFMKHYENEQRLRNGCPFNGWYMSTEIGC 82 (177)
Q Consensus 13 ~pfngwym-----~tEIg~R~~~d~~ryn-~l~~---~~vt-i~dhhta~~~f~~~~~~e~~~~~~~P~nw~wm~ppIs~ 82 (177)
.-|.||=- .+=.|.+=++|.+|.+ .+|. .++. +||||+.=|.-.. .=..+++..-=.|||+.|||--
T Consensus 256 ~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd~~~~~edi~d---AI~~Ar~~IyItgWwl~pel~L 332 (887)
T KOG1329|consen 256 RSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVDGKKYWEDVAD---AIENARREIYITGWWLSPELYL 332 (887)
T ss_pred cccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEchhhHHHHHHH---HHHhhhhEEEEeccccCceEEE
Confidence 34666632 2233445578888888 7776 7788 9999998665443 3345667777889999999974
Q ss_pred c
Q psy8546 83 R 83 (177)
Q Consensus 83 r 83 (177)
.
T Consensus 333 ~ 333 (887)
T KOG1329|consen 333 V 333 (887)
T ss_pred E
Confidence 3
Done!