Query psy8546
Match_columns 177
No_of_seqs 164 out of 322
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 21:38:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8546.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8546hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n5w_A Nitric oxide synthase; 100.0 2.6E-56 8.8E-61 401.8 -0.7 114 1-125 274-422 (422)
2 3e7m_A Nitric oxide synthase, 100.0 2.4E-56 8.2E-61 403.0 -1.2 114 1-125 284-432 (433)
3 2ort_A Nitric oxide synthase, 100.0 5.6E-56 1.9E-60 396.8 0.8 115 1-126 236-385 (389)
4 1m7v_A Nitric oxide synthase; 100.0 1.6E-54 5.5E-59 384.7 2.8 108 1-119 221-363 (363)
5 2flq_A Nitric oxide synthase; 100.0 1.3E-53 4.5E-58 379.9 2.9 107 1-118 226-367 (375)
6 1d0c_A Bovine endothelial nitr 100.0 1.7E-53 5.9E-58 385.0 1.1 107 1-118 303-444 (444)
7 1mjt_A Nitric-oxide synthase h 100.0 1.4E-53 4.9E-58 376.9 0.5 104 1-115 209-347 (347)
8 1m7v_A Nitric oxide synthase; 99.6 6.9E-17 2.4E-21 143.8 1.6 73 66-149 230-305 (363)
9 3n5w_A Nitric oxide synthase; 99.6 6.1E-17 2.1E-21 146.3 0.6 73 66-149 283-358 (422)
10 1mjt_A Nitric-oxide synthase h 99.6 5.9E-17 2E-21 143.6 0.4 73 66-149 218-293 (347)
11 3e7m_A Nitric oxide synthase, 99.6 6.9E-17 2.3E-21 146.3 0.8 73 66-149 293-368 (433)
12 2flq_A Nitric oxide synthase; 99.6 7.8E-17 2.7E-21 143.9 0.9 73 66-149 235-310 (375)
13 1d0c_A Bovine endothelial nitr 99.6 1.6E-16 5.3E-21 144.3 0.6 73 66-149 312-387 (444)
14 2ort_A Nitric oxide synthase, 99.6 1.1E-16 3.6E-21 143.7 -1.7 73 66-149 245-320 (389)
15 3hr4_A Nitric oxide synthase, 98.8 2.9E-09 9.8E-14 88.7 6.0 50 126-175 20-69 (219)
16 3hr4_A Nitric oxide synthase, 95.8 0.0063 2.2E-07 50.4 3.6 45 83-127 17-61 (219)
17 2o60_B CAM, peptide correspond 95.5 0.0073 2.5E-07 35.1 2.2 19 126-144 8-26 (26)
18 2o60_B CAM, peptide correspond 91.1 0.091 3.1E-06 30.4 1.5 21 84-104 6-26 (26)
19 2bpo_A CPR, P450R, NADPH-cytoc 90.4 0.21 7.1E-06 47.0 4.2 27 146-172 49-75 (682)
20 2q9u_A A-type flavoprotein; fl 55.0 18 0.00062 30.4 5.3 26 147-172 257-282 (414)
21 1e5d_A Rubredoxin\:oxygen oxid 49.3 12 0.0004 31.2 3.2 27 146-172 252-278 (402)
22 2ohh_A Type A flavoprotein FPR 49.3 12 0.0004 31.3 3.2 28 145-172 255-282 (404)
23 1ycg_A Nitric oxide reductase; 48.1 12 0.00043 31.0 3.2 27 146-172 251-277 (398)
24 2wy3_B UL16, uncharacterized p 37.9 5.2 0.00018 31.3 -0.7 18 20-40 69-86 (158)
25 4dik_A Flavoprotein; TM0755, e 29.1 62 0.0021 28.3 4.7 37 136-172 255-291 (410)
26 1wlx_A Alpha-actinin 4; three- 25.7 2.4 8.2E-05 32.7 -4.4 26 12-40 21-46 (129)
No 1
>3n5w_A Nitric oxide synthase; heme enzyme, substrate inhibitor, Zn oxidoreductase, oxidoreductase-oxidoreductase inhibitor COM; HET: HEM XFJ; 1.73A {Rattus norvegicus} SCOP: d.174.1.1 PDB: 2hx3_A* 2hx4_A* 3b3m_A* 3b3n_A* 3b3o_A* 3b3p_A* 3hsn_A* 3hso_A* 3hsp_A* 3jt3_A* 3jt4_A* 3jt5_A* 3jt6_A* 3jt7_A* 3jt8_A* 3jt9_A* 3jta_A* 3n2r_A* 3n5v_A* 1om4_A* ...
Probab=100.00 E-value=2.6e-56 Score=401.84 Aligned_cols=114 Identities=43% Similarity=0.830 Sum_probs=111.0
Q ss_pred CcccccceecccCCcCccccccccccccCCcccccccccC----------------------------------CCceEe
Q psy8546 1 MMFDCGGLQFTAAPFNGWYMSTEIGCRDLCDTKRYNICEN----------------------------------RNTTIV 46 (177)
Q Consensus 1 m~l~~gg~~~~a~pfngwym~tEIg~R~~~d~~ryn~l~~----------------------------------~~vti~ 46 (177)
|+||||||+||||||||||||||||+|||||++|||+||+ +|||||
T Consensus 274 M~LeiGGi~y~aaPFNGWYMgTEIG~Rnl~D~~RYN~L~~VA~~mgLdt~~~~sLWkDrAlvElN~AVlhSF~~~gVtIv 353 (422)
T 3n5w_A 274 MLLEIGGLEFSACPFSGWYMGTEIGVRDYCDNSRYNILEEVAKKMDLDMRKTSSLWKDQALVEINIAVLYSFQSDKVTIV 353 (422)
T ss_dssp EEEEETTEEESCCCEECCEEHHHHHTHHHHSTTTTCCHHHHHHHTTCCCSCGGGCHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ceeecCceeccCCCcccceeeehhhhhhcccchhhhhHHHHHHHhCcccCCcchhHHHHHHHHHHHHHHHHHHhCCceEe
Confidence 8999999999999999999999999999999999999999 999999
Q ss_pred echhHHHHHHHHHHHHhhhcCCCCccceEeeccccccchhhhhhhhhhhhHHHHHhhc-cccccccccccCCCcchhHHH
Q psy8546 47 DHHSAAEQFMKHYENEQRLRNGCPFNGWYMSTEIGCRDLCDTKRAVKFTSKLFGRALS-RRIKATVLYATETGKSELYAK 125 (177)
Q Consensus 47 dhhta~~~f~~~~~~e~~~~~~~P~nw~wm~ppIs~rnf~d~~ry~~lts~lfhk~ma-~rlkptilYqtet~ks~~wk~ 125 (177)
||||||+|||+|+++|.++||+||+||+|++||+|++ +| ++||+.|. +.++|+|+||+++|+.|+|++
T Consensus 354 DHHtas~~F~~~~~~E~~~~r~~p~dW~WlvPP~Sgs----------~T-pvfH~~~~n~~l~P~f~yq~~~w~~h~w~~ 422 (422)
T 3n5w_A 354 DHHSATESFIKHMENEYRCRGGCPADWVWIVPPMSGS----------IT-PVFHQEMLNYRLTPSFEYQPDPWNTHVWKG 422 (422)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCCCCCHHHHSCSSSGG----------GS-TTTTBCCCBCCCSSEEEECCCGGGTCCC--
T ss_pred ccchhHHHHHHHHHHHHHhCCCCCCCceeeCCCcccc----------cc-chhhhhccccccCCccccCCcchhhcccCC
Confidence 9999999999999999999999999999999999999 88 99999999 999999999999999999973
No 2
>3e7m_A Nitric oxide synthase, inducible; NOS, heme, tetrahydrobiopterin, oxido calmodulin-binding, FAD, FMN, iron, metal-binding, NADP, oxidoreductase; HET: HEM H4B AT2; 2.00A {Mus musculus} SCOP: d.174.1.1 PDB: 2y37_A* 1r35_A* 3e67_A* 3e68_A* 3e6l_A* 3e6n_A* 3e6o_A* 3e6t_A* 3e7i_A* 3e65_A* 3e7t_A* 3eai_A* 3ebd_A* 3ebf_A* 3nqs_A* 1m8d_A* 1m8e_A* 1m8h_A* 1m8i_A* 1m9t_A* ...
Probab=100.00 E-value=2.4e-56 Score=403.01 Aligned_cols=114 Identities=45% Similarity=0.858 Sum_probs=112.3
Q ss_pred CcccccceecccCCcCccccccccccccCCcccccccccC----------------------------------CCceEe
Q psy8546 1 MMFDCGGLQFTAAPFNGWYMSTEIGCRDLCDTKRYNICEN----------------------------------RNTTIV 46 (177)
Q Consensus 1 m~l~~gg~~~~a~pfngwym~tEIg~R~~~d~~ryn~l~~----------------------------------~~vti~ 46 (177)
|+||||||+||||||||||||||||+|||||++|||+||+ +|||||
T Consensus 284 M~LeiGGi~y~aaPFNGWYMgTEIGaRnl~D~~RYN~L~~VA~~mgLdt~~~~sLWkDrAlvElN~AVLhSF~~~gVtIv 363 (433)
T 3e7m_A 284 MLLEVGGLEFPACPFNGWYMGTEIGVRDFCDTQRYNILEEVGRRMGLETHTLASLWKDRAVTEINVAVLHSFQKQNVTIM 363 (433)
T ss_dssp CEEEETTEEESCCCEECCEEHHHHHTHHHHSTTTTCCHHHHHHHTTCCTTCGGGTHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ceeccCceecccCCcccceeeehhhhhhcccchhhhhHHHHHHHhCcccCCcchhHHHHHHHHHHHHHHHHHHhCCceEe
Confidence 8999999999999999999999999999999999999999 999999
Q ss_pred echhHHHHHHHHHHHHhhhcCCCCccceEeeccccccchhhhhhhhhhhhHHHHHhhc-cccccccccccCCCcchhHHH
Q psy8546 47 DHHSAAEQFMKHYENEQRLRNGCPFNGWYMSTEIGCRDLCDTKRAVKFTSKLFGRALS-RRIKATVLYATETGKSELYAK 125 (177)
Q Consensus 47 dhhta~~~f~~~~~~e~~~~~~~P~nw~wm~ppIs~rnf~d~~ry~~lts~lfhk~ma-~rlkptilYqtet~ks~~wk~ 125 (177)
||||||+|||+|+++|+++||+||+||+|++||+|++ +| ++||+.|. +.++|+|+||+++|++|.|++
T Consensus 364 DHHtas~~F~~~~~~E~~~~r~~p~dW~WlvPP~Sgs----------~T-pvfH~~~~n~~l~P~f~yq~~~w~~h~w~~ 432 (433)
T 3e7m_A 364 DHHTASESFMKHMQNEYRARGGCPADWIWLVPPVSGS----------IT-PVFHQEMLNYVLSPFYYYQIEPWKTHIWQN 432 (433)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCCCCCHHHHSCSSSGG----------GS-GGGGBCCCCCCCSSEEEBCCCHHHHCCCCC
T ss_pred ccchhHHHHHHHHHHHHHhCCCCCCCceeeCCCcccc----------cC-chhhccccccccCCccccCCchhhhccccC
Confidence 9999999999999999999999999999999999999 88 99999999 999999999999999999974
No 3
>2ort_A Nitric oxide synthase, inducible; L-arginine monooxygenase, heme, dimerization, inhibitor, NOS, oxidoreductase; HET: HEM 342; 1.87A {Mus musculus} PDB: 1dd7_A* 2oro_A* 2orq_A* 2orr_A* 2ors_A* 2orp_A* 1nos_A* 1noc_A* 2nos_A* 1df1_A* 1nod_A* 2nod_A* 3nod_A* 3nw2_A* 2bhj_A* 1dwv_A* 1dww_A* 1dwx_A* 1n2n_A* 1qw4_A* ...
Probab=100.00 E-value=5.6e-56 Score=396.79 Aligned_cols=115 Identities=44% Similarity=0.854 Sum_probs=63.2
Q ss_pred CcccccceecccCCcCccccccccccccCCcccccccccC----------------------------------CCceEe
Q psy8546 1 MMFDCGGLQFTAAPFNGWYMSTEIGCRDLCDTKRYNICEN----------------------------------RNTTIV 46 (177)
Q Consensus 1 m~l~~gg~~~~a~pfngwym~tEIg~R~~~d~~ryn~l~~----------------------------------~~vti~ 46 (177)
|+||||||+||||||||||||||||+|||||++||||||. +|||||
T Consensus 236 M~L~iGGi~y~aaPFNGWYMgTEIGaRNl~D~~RYn~L~~vA~~mGLdt~~~~sLWkDrAlvElN~AVLhSF~~~gVtiv 315 (389)
T 2ort_A 236 MLLEVGGLEFPACPFNGWYMGTEIGVRDFCDTQRYNILEEVGRRMGLETHTLASLWKDRAVTEINVAVLHSFQKQNVTIM 315 (389)
T ss_dssp CEEEETTEEESCCCEECCBCC-------------------------------------------CCHHHHHHHHTTCCBC
T ss_pred ceeecCCeeccCCCcccceechhhhhhhccCchhhHHHHHHHHHhCccCCCchhhhHHHHHHHHHHHHHHHHhhCCceee
Confidence 8999999999999999999999999999999999999999 999999
Q ss_pred echhHHHHHHHHHHHHhhhcCCCCccceEeeccccccchhhhhhhhhhhhHHHHHhhc-cccccccccccCCCcchhHHH
Q psy8546 47 DHHSAAEQFMKHYENEQRLRNGCPFNGWYMSTEIGCRDLCDTKRAVKFTSKLFGRALS-RRIKATVLYATETGKSELYAK 125 (177)
Q Consensus 47 dhhta~~~f~~~~~~e~~~~~~~P~nw~wm~ppIs~rnf~d~~ry~~lts~lfhk~ma-~rlkptilYqtet~ks~~wk~ 125 (177)
||||||+|||+|+++|+++||+||+||+|++||+|++ +| ++||+.|. +.++|+++||+++|+.|.|++
T Consensus 316 DHHtas~~F~~~~~~E~~~~r~~p~dW~WlvPP~S~s----------~t-pvfH~~~~n~~l~P~f~yq~~~w~~h~~~~ 384 (389)
T 2ort_A 316 DHHTASESFMKHMQNEYRARGGCPADWIWLVPPVSGS----------IT-PVFHQEMLNYVLSPFYYYQIEPWKTHIWQN 384 (389)
T ss_dssp CHHHHHHHHHHHHHSCC-------------------------------------------CCSSEEEBCCCHHHHCCCSC
T ss_pred ccccchHHHHHHHHHHHHhCCCCCCCCeeeCCCcccc----------cc-hhhhhhhhhcccCCcccccCCcccccccCC
Confidence 9999999999999999999999999999999999999 88 99999999 999999999999999999984
Q ss_pred H
Q psy8546 126 K 126 (177)
Q Consensus 126 k 126 (177)
+
T Consensus 385 ~ 385 (389)
T 2ort_A 385 E 385 (389)
T ss_dssp C
T ss_pred C
Confidence 3
No 4
>1m7v_A Nitric oxide synthase; pterin oxygenase, bacteria, heme, oxidoreductase; HET: ARG HEM THG; 1.95A {Bacillus subtilis} SCOP: d.174.1.1 PDB: 2fbz_X* 2fc1_A* 1m7z_A* 2fc2_A* 2an0_A* 2amo_A* 2an2_A*
Probab=100.00 E-value=1.6e-54 Score=384.70 Aligned_cols=108 Identities=36% Similarity=0.636 Sum_probs=106.1
Q ss_pred CcccccceecccCCcCccccccccccccCCcccccccccC----------------------------------CCceEe
Q psy8546 1 MMFDCGGLQFTAAPFNGWYMSTEIGCRDLCDTKRYNICEN----------------------------------RNTTIV 46 (177)
Q Consensus 1 m~l~~gg~~~~a~pfngwym~tEIg~R~~~d~~ryn~l~~----------------------------------~~vti~ 46 (177)
|+||||||+||||||||||||||||+|||||++||||||. +|||||
T Consensus 221 M~L~iGGi~y~aaPFNGWYMgTEIGaRnl~D~~RYn~L~~vA~~mGldt~~~~sLWkDrAlvElN~AVlhSF~~~gVtiv 300 (363)
T 1m7v_A 221 MKLEVGGIHYNAAPFNGWYMGTEIGARNLADEKRYDKLKKVASVIGISTNYNTDLWKDQALVELNKAVLYSYKKQGVSIV 300 (363)
T ss_dssp CEEEETTEEESCCCEECCEEHHHHHTTTTTCTTTTCCHHHHHHHTTCCCSCGGGTHHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred ceeecCCeeccCCCcccceehhhhhhhhcccchhhHHHHHHHHHhCccCCCchhhhHHHHHHHHHHHHHHHHHhCCceee
Confidence 8999999999999999999999999999999999999999 999999
Q ss_pred echhHHHHHHHHHHHHhhhcCCCCccceEeeccccccchhhhhhhhhhhhHHHHHhhc-cccccccccccCCCc
Q psy8546 47 DHHSAAEQFMKHYENEQRLRNGCPFNGWYMSTEIGCRDLCDTKRAVKFTSKLFGRALS-RRIKATVLYATETGK 119 (177)
Q Consensus 47 dhhta~~~f~~~~~~e~~~~~~~P~nw~wm~ppIs~rnf~d~~ry~~lts~lfhk~ma-~rlkptilYqtet~k 119 (177)
||||||+|||+|+++|+++||+||+||+|++||+|++ +| ++||+.|. +.++|+++||+++|.
T Consensus 301 DHHtas~~F~~~~~~E~~~gr~~p~dW~WlvPP~S~s----------~t-pvfH~~~~~~~l~P~f~yq~~~~~ 363 (363)
T 1m7v_A 301 DHHTAASQFKRFEEQEEEAGRKLTGDWTWLIPPISPA----------AT-HIFHRSYDNSIVKPNYFYQDKPYE 363 (363)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCBCCHHHHSCSSSGG----------GS-GGGGSCCBCCCCSSEEECCCCTTC
T ss_pred ccccchHHHHHHHHHHHHhCCCCCCCCeeeCCCCccc----------cc-hhhhhhhhhcccCCccccCCCCCC
Confidence 9999999999999999999999999999999999999 88 99999999 999999999999984
No 5
>2flq_A Nitric oxide synthase; thermostable enzyme, oxidoreductase; HET: ARG HEM; 3.20A {Geobacillus stearothermophilus}
Probab=100.00 E-value=1.3e-53 Score=379.89 Aligned_cols=107 Identities=33% Similarity=0.582 Sum_probs=104.5
Q ss_pred CcccccceecccCCcCccccccccccccCCcccccccccC----------------------------------CCceEe
Q psy8546 1 MMFDCGGLQFTAAPFNGWYMSTEIGCRDLCDTKRYNICEN----------------------------------RNTTIV 46 (177)
Q Consensus 1 m~l~~gg~~~~a~pfngwym~tEIg~R~~~d~~ryn~l~~----------------------------------~~vti~ 46 (177)
|+||||||+||||||||||||||||+|||||++||||||. +|||||
T Consensus 226 M~L~iGGi~y~aaPFNGWYMgTEIGaRNl~D~~RYn~L~~vA~~mGLdt~~~~sLWkDrAlvElN~AVLhSF~~~gVtiv 305 (375)
T 2flq_A 226 MCLEIGGIRYMAAPFNGWYMGTEIGARNFADDYRYNMLPKVASCMGLDTNSNASLWKDKALVELNIAVLYSYKKAGVSIV 305 (375)
T ss_dssp CEEEETTEEESCCCEECCCBTHHHHHTTTTCTTTTCCHHHHHHHTTCCSSCGGGCHHHHHHHHHHHHHHHHHHHHTCCCB
T ss_pred ceeecCCeeccCCCcccceeeehhhhhhcccchhhHHHHHHHHHhCccCCCchhhhHHHHHHHHHHHHHHHHhhCCceee
Confidence 8999999999999999999999999999999999999999 999999
Q ss_pred echhHHHHHHHHHHHHhhhcCCCCccceEeeccccccchhhhhhhhhhhhHHHHHhhc-cccccccccccCCC
Q psy8546 47 DHHSAAEQFMKHYENEQRLRNGCPFNGWYMSTEIGCRDLCDTKRAVKFTSKLFGRALS-RRIKATVLYATETG 118 (177)
Q Consensus 47 dhhta~~~f~~~~~~e~~~~~~~P~nw~wm~ppIs~rnf~d~~ry~~lts~lfhk~ma-~rlkptilYqtet~ 118 (177)
||||||+|||+|+++|+++||+||+||+|++||+|++ +| ++||+.|. +.++|+++||++++
T Consensus 306 DHHtas~~F~~~~~~E~~~~r~~p~dW~WlvPPlS~s----------~t-pvfH~~~~n~~l~P~f~yq~~~~ 367 (375)
T 2flq_A 306 DHHTAARQFQLFEQQEKAAGRHVTGDWTWLIPPLSPA----------TT-HIFHRSYDNTMMLPNFFYQDRPY 367 (375)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCBCCGGGTSCSSSGG----------GS-GGGGSCCBCCCCSSEEECCCCTT
T ss_pred ccccchHHHHHHHHHHHHhCCCCCCCCeeeCCCCccc----------cc-hhhhhhhhhcccCCccccCCCCC
Confidence 9999999999999999999999999999999999999 88 99999999 99999999998763
No 6
>1d0c_A Bovine endothelial nitric oxide synthase heme DOM; alpha-beta fold, oxidoreductase; HET: HEM INE; 1.65A {Bos taurus} SCOP: d.174.1.1 PDB: 1d0o_A* 1d1v_A* 1d1w_A* 1d1x_A* 1d1y_A* 1dm6_A* 1dm7_A* 1dm8_A* 1dmi_A* 1dmj_A* 1dmk_A* 1ed4_A* 1ed5_A* 1ed6_A* 1foi_A* 1foj_A* 1fol_A* 1foo_A* 1fop_A* 1nse_A* ...
Probab=100.00 E-value=1.7e-53 Score=385.03 Aligned_cols=107 Identities=46% Similarity=0.857 Sum_probs=105.4
Q ss_pred CcccccceecccCCcCccccccccccccCCcccccccccC----------------------------------CCceEe
Q psy8546 1 MMFDCGGLQFTAAPFNGWYMSTEIGCRDLCDTKRYNICEN----------------------------------RNTTIV 46 (177)
Q Consensus 1 m~l~~gg~~~~a~pfngwym~tEIg~R~~~d~~ryn~l~~----------------------------------~~vti~ 46 (177)
|+||||||+||||||||||||||||+|||||++||||||. +|||||
T Consensus 303 M~L~iGGi~y~aaPFNGWYMgTEIGaRNl~D~~RYN~L~~VA~~mGLdT~~~~sLWkDrAlVElN~AVLhSF~~~gVtIv 382 (444)
T 1d0c_A 303 MLLEIGGLEFSAAPFSGWYMSTEIGTRNLCDPHRYNILEDVAVCMDLDTRTTSSLWKDKAAVEINLAVLHSFQLAKVTIV 382 (444)
T ss_dssp CEEEETTEEESCCCEECCEEHHHHHTHHHHSTTTTCCHHHHHHHTTCCTTCGGGCHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ceeecCCeecccCCcccceeeehhhhhhcccchhhhHHHHHHHHhCcccCCchhhhhHHHHHHHHHHHHHHHhhCCceee
Confidence 8999999999999999999999999999999999999999 999999
Q ss_pred echhHHHHHHHHHHHHhhhcCCCCccceEeeccccccchhhhhhhhhhhhHHHHHhhc-cccccccccccCCC
Q psy8546 47 DHHSAAEQFMKHYENEQRLRNGCPFNGWYMSTEIGCRDLCDTKRAVKFTSKLFGRALS-RRIKATVLYATETG 118 (177)
Q Consensus 47 dhhta~~~f~~~~~~e~~~~~~~P~nw~wm~ppIs~rnf~d~~ry~~lts~lfhk~ma-~rlkptilYqtet~ 118 (177)
||||||+|||+|+++|+++||+||+||+|++||+|++ +| ++||+.|. +.++|+++||+++|
T Consensus 383 DHHtas~qF~~h~~~E~~~~r~~pgdW~WlvPPlSgs----------~T-pvfH~~~~n~~l~P~f~yq~~~w 444 (444)
T 1d0c_A 383 DHHAATVSFMKHLDNEQKARGGCPADWAWIVPPISGS----------LT-PVFHQEMVNYILSPAFRYQPDPW 444 (444)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCCBCCHHHHSCSSSGG----------GS-GGGGBCCBBCCCSSEEECCCCCC
T ss_pred ccccchHHHHHHHHHHHHhCCCCCCCCeeeCCCcccc----------cc-hhhhhhhhhcccCCccccCCCCC
Confidence 9999999999999999999999999999999999999 88 99999999 99999999999887
No 7
>1mjt_A Nitric-oxide synthase homolog; sanos, NO, NOS, bacterial, MRSA, seitu, oxidoreductase; HET: SUC HEM NAD; 2.40A {Staphylococcus aureus} SCOP: d.174.1.1
Probab=100.00 E-value=1.4e-53 Score=376.90 Aligned_cols=104 Identities=32% Similarity=0.542 Sum_probs=102.2
Q ss_pred CcccccceecccCCcCccccccccccccCCcccccccccC----------------------------------CCceEe
Q psy8546 1 MMFDCGGLQFTAAPFNGWYMSTEIGCRDLCDTKRYNICEN----------------------------------RNTTIV 46 (177)
Q Consensus 1 m~l~~gg~~~~a~pfngwym~tEIg~R~~~d~~ryn~l~~----------------------------------~~vti~ 46 (177)
|+||||||+||||||||||||||||+|||||++||||||. +|||||
T Consensus 209 M~L~iGGi~y~aaPFNGWYMgTEIgaRnl~D~~RYn~L~~vA~~mgldt~~~~sLWkDrAlvElN~AVlhSF~~~gVtiv 288 (347)
T 1mjt_A 209 MDLKIGGIVYPTAPFNGWYMVTEIGVRNFIDDYRYNLLEKVADAFEFDTLKNNSFNKDRALVELNYAVYHSFKKEGVSIV 288 (347)
T ss_dssp EEEEETTEEESCCCEECCCBHHHHHTHHHHCTTTTCCHHHHHHHTTCSCCCGGGTHHHHHHHHHHHHHHHHHHHTTCCCB
T ss_pred ceeecCCeeccCCCcccceehhhhhhhhcccchhhHHHHHHHHHhCccCCCchhhhHHHHHHHHHHHHHHHHhhCCceee
Confidence 8999999999999999999999999999999999999999 999999
Q ss_pred echhHHHHHHHHHHHHhhhcCCCCccceEeeccccccchhhhhhhhhhhhHHHHHhhc-ccccccccccc
Q psy8546 47 DHHSAAEQFMKHYENEQRLRNGCPFNGWYMSTEIGCRDLCDTKRAVKFTSKLFGRALS-RRIKATVLYAT 115 (177)
Q Consensus 47 dhhta~~~f~~~~~~e~~~~~~~P~nw~wm~ppIs~rnf~d~~ry~~lts~lfhk~ma-~rlkptilYqt 115 (177)
||||||+|||+|+++|+++||+||+||+|++||+|++ +| ++||+.|. +.++|+++||+
T Consensus 289 DHHtas~~F~~~~~~E~~~~r~~p~dW~WlvPP~S~s----------~t-pvfH~~~~~~~l~P~f~yq~ 347 (347)
T 1mjt_A 289 DHLTAAKQFELFERNEAQQGRQVTGKWSWLAPPLSPT----------LT-SNYHHGYDNTVKDPNFFYKK 347 (347)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCCBCCHHHHSCSSSGG----------GS-GGGGSCCBCCCCSSEEEECC
T ss_pred ccccchHHHHHHHHHHHHhCCCCCCCCeeeCCCCccc----------cc-hhhhhhhhhcccCCcccCCC
Confidence 9999999999999999999999999999999999999 88 99999999 99999999984
No 8
>1m7v_A Nitric oxide synthase; pterin oxygenase, bacteria, heme, oxidoreductase; HET: ARG HEM THG; 1.95A {Bacillus subtilis} SCOP: d.174.1.1 PDB: 2fbz_X* 2fc1_A* 1m7z_A* 2fc2_A* 2an0_A* 2amo_A* 2an2_A*
Probab=99.61 E-value=6.9e-17 Score=143.82 Aligned_cols=73 Identities=34% Similarity=0.549 Sum_probs=64.2
Q ss_pred cCCCCccceEeeccccccchhhhhhhhhhhhHHHHHhhccccccccccccCCCcchhHHHH---HHHHHHHHHHHHHHHH
Q psy8546 66 RNGCPFNGWYMSTEIGCRDLCDTKRAVKFTSKLFGRALSRRIKATVLYATETGKSELYAKK---LGELAVKFTSKLFGRA 142 (177)
Q Consensus 66 ~~~~P~nw~wm~ppIs~rnf~d~~ry~~lts~lfhk~ma~rlkptilYqtet~ks~~wk~k---eln~AVl~S~kl~~~a 142 (177)
..+||||||||++|||+|||+|..|||+++ .+++.|+ ++++ ..+++|||+ |||.||+|||+..|+.
T Consensus 230 y~aaPFNGWYMgTEIGaRnl~D~~RYn~L~--~vA~~mG--ldt~-------~~~sLWkDrAlvElN~AVlhSF~~~gVt 298 (363)
T 1m7v_A 230 YNAAPFNGWYMGTEIGARNLADEKRYDKLK--KVASVIG--ISTN-------YNTDLWKDQALVELNKAVLYSYKKQGVS 298 (363)
T ss_dssp ESCCCEECCEEHHHHHTTTTTCTTTTCCHH--HHHHHTT--CCCS-------CGGGTHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ccCCCcccceehhhhhhhhcccchhhHHHH--HHHHHhC--ccCC-------CchhhhHHHHHHHHHHHHHHHHHhCCce
Confidence 578999999999999999999999999999 6688898 4442 468999995 9999999999999999
Q ss_pred hhcceeE
Q psy8546 143 LSRRIKA 149 (177)
Q Consensus 143 ~~~rVka 149 (177)
+.+..-|
T Consensus 299 ivDHHta 305 (363)
T 1m7v_A 299 IVDHHTA 305 (363)
T ss_dssp EECHHHH
T ss_pred eeccccc
Confidence 8877654
No 9
>3n5w_A Nitric oxide synthase; heme enzyme, substrate inhibitor, Zn oxidoreductase, oxidoreductase-oxidoreductase inhibitor COM; HET: HEM XFJ; 1.73A {Rattus norvegicus} SCOP: d.174.1.1 PDB: 2hx3_A* 2hx4_A* 3b3m_A* 3b3n_A* 3b3o_A* 3b3p_A* 3hsn_A* 3hso_A* 3hsp_A* 3jt3_A* 3jt4_A* 3jt5_A* 3jt6_A* 3jt7_A* 3jt8_A* 3jt9_A* 3jta_A* 3n2r_A* 3n5v_A* 1om4_A* ...
Probab=99.61 E-value=6.1e-17 Score=146.29 Aligned_cols=73 Identities=29% Similarity=0.535 Sum_probs=64.1
Q ss_pred cCCCCccceEeeccccccchhhhhhhhhhhhHHHHHhhccccccccccccCCCcchhHHHH---HHHHHHHHHHHHHHHH
Q psy8546 66 RNGCPFNGWYMSTEIGCRDLCDTKRAVKFTSKLFGRALSRRIKATVLYATETGKSELYAKK---LGELAVKFTSKLFGRA 142 (177)
Q Consensus 66 ~~~~P~nw~wm~ppIs~rnf~d~~ry~~lts~lfhk~ma~rlkptilYqtet~ks~~wk~k---eln~AVl~S~kl~~~a 142 (177)
..+||||||||++|||+|||+|..|||+++ .+++.|+ +++. ..+++|||+ |||.||||||+..|++
T Consensus 283 y~aaPFNGWYMgTEIG~Rnl~D~~RYN~L~--~VA~~mg--Ldt~-------~~~sLWkDrAlvElN~AVlhSF~~~gVt 351 (422)
T 3n5w_A 283 FSACPFSGWYMGTEIGVRDYCDNSRYNILE--EVAKKMD--LDMR-------KTSSLWKDQALVEINIAVLYSFQSDKVT 351 (422)
T ss_dssp ESCCCEECCEEHHHHHTHHHHSTTTTCCHH--HHHHHTT--CCCS-------CGGGCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccCCCcccceeeehhhhhhcccchhhhhHH--HHHHHhC--cccC-------CcchhHHHHHHHHHHHHHHHHHHhCCce
Confidence 458999999999999999999999999999 6678898 4443 458999995 9999999999999999
Q ss_pred hhcceeE
Q psy8546 143 LSRRIKA 149 (177)
Q Consensus 143 ~~~rVka 149 (177)
+.+..-|
T Consensus 352 IvDHHta 358 (422)
T 3n5w_A 352 IVDHHSA 358 (422)
T ss_dssp EECHHHH
T ss_pred Eeccchh
Confidence 8887654
No 10
>1mjt_A Nitric-oxide synthase homolog; sanos, NO, NOS, bacterial, MRSA, seitu, oxidoreductase; HET: SUC HEM NAD; 2.40A {Staphylococcus aureus} SCOP: d.174.1.1
Probab=99.61 E-value=5.9e-17 Score=143.58 Aligned_cols=73 Identities=27% Similarity=0.404 Sum_probs=64.2
Q ss_pred cCCCCccceEeeccccccchhhhhhhhhhhhHHHHHhhccccccccccccCCCcchhHHHH---HHHHHHHHHHHHHHHH
Q psy8546 66 RNGCPFNGWYMSTEIGCRDLCDTKRAVKFTSKLFGRALSRRIKATVLYATETGKSELYAKK---LGELAVKFTSKLFGRA 142 (177)
Q Consensus 66 ~~~~P~nw~wm~ppIs~rnf~d~~ry~~lts~lfhk~ma~rlkptilYqtet~ks~~wk~k---eln~AVl~S~kl~~~a 142 (177)
..+||||||||++|||+|||+|..|||+++ .+++.|+ +++. ..+++|||+ |||.||+|||+..|+.
T Consensus 218 y~aaPFNGWYMgTEIgaRnl~D~~RYn~L~--~vA~~mg--ldt~-------~~~sLWkDrAlvElN~AVlhSF~~~gVt 286 (347)
T 1mjt_A 218 YPTAPFNGWYMVTEIGVRNFIDDYRYNLLE--KVADAFE--FDTL-------KNNSFNKDRALVELNYAVYHSFKKEGVS 286 (347)
T ss_dssp ESCCCEECCCBHHHHHTHHHHCTTTTCCHH--HHHHHTT--CSCC-------CGGGTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccCCCcccceehhhhhhhhcccchhhHHHH--HHHHHhC--ccCC-------CchhhhHHHHHHHHHHHHHHHHhhCCce
Confidence 578999999999999999999999999999 6688898 4442 468999995 9999999999999999
Q ss_pred hhcceeE
Q psy8546 143 LSRRIKA 149 (177)
Q Consensus 143 ~~~rVka 149 (177)
+.+..-|
T Consensus 287 ivDHHta 293 (347)
T 1mjt_A 287 IVDHLTA 293 (347)
T ss_dssp CBCHHHH
T ss_pred eeccccc
Confidence 8887654
No 11
>3e7m_A Nitric oxide synthase, inducible; NOS, heme, tetrahydrobiopterin, oxido calmodulin-binding, FAD, FMN, iron, metal-binding, NADP, oxidoreductase; HET: HEM H4B AT2; 2.00A {Mus musculus} SCOP: d.174.1.1 PDB: 2y37_A* 1r35_A* 3e67_A* 3e68_A* 3e6l_A* 3e6n_A* 3e6o_A* 3e6t_A* 3e7i_A* 3e65_A* 3e7t_A* 3eai_A* 3ebd_A* 3ebf_A* 3nqs_A* 1m8d_A* 1m8e_A* 1m8h_A* 1m8i_A* 1m9t_A* ...
Probab=99.61 E-value=6.9e-17 Score=146.35 Aligned_cols=73 Identities=33% Similarity=0.585 Sum_probs=63.7
Q ss_pred cCCCCccceEeeccccccchhhhhhhhhhhhHHHHHhhccccccccccccCCCcchhHHHH---HHHHHHHHHHHHHHHH
Q psy8546 66 RNGCPFNGWYMSTEIGCRDLCDTKRAVKFTSKLFGRALSRRIKATVLYATETGKSELYAKK---LGELAVKFTSKLFGRA 142 (177)
Q Consensus 66 ~~~~P~nw~wm~ppIs~rnf~d~~ry~~lts~lfhk~ma~rlkptilYqtet~ks~~wk~k---eln~AVl~S~kl~~~a 142 (177)
..+||||||||++|||+|||+|..|||+++ .+++.|+ +++. ..+++|||+ |||.||||||+..|++
T Consensus 293 y~aaPFNGWYMgTEIGaRnl~D~~RYN~L~--~VA~~mg--Ldt~-------~~~sLWkDrAlvElN~AVLhSF~~~gVt 361 (433)
T 3e7m_A 293 FPACPFNGWYMGTEIGVRDFCDTQRYNILE--EVGRRMG--LETH-------TLASLWKDRAVTEINVAVLHSFQKQNVT 361 (433)
T ss_dssp ESCCCEECCEEHHHHHTHHHHSTTTTCCHH--HHHHHTT--CCTT-------CGGGTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cccCCcccceeeehhhhhhcccchhhhhHH--HHHHHhC--cccC-------CcchhHHHHHHHHHHHHHHHHHHhCCce
Confidence 458999999999999999999999999999 6678898 4443 458899995 9999999999999999
Q ss_pred hhcceeE
Q psy8546 143 LSRRIKA 149 (177)
Q Consensus 143 ~~~rVka 149 (177)
+.+..-|
T Consensus 362 IvDHHta 368 (433)
T 3e7m_A 362 IMDHHTA 368 (433)
T ss_dssp EECHHHH
T ss_pred Eeccchh
Confidence 8887654
No 12
>2flq_A Nitric oxide synthase; thermostable enzyme, oxidoreductase; HET: ARG HEM; 3.20A {Geobacillus stearothermophilus}
Probab=99.60 E-value=7.8e-17 Score=143.87 Aligned_cols=73 Identities=29% Similarity=0.508 Sum_probs=64.3
Q ss_pred cCCCCccceEeeccccccchhhhhhhhhhhhHHHHHhhccccccccccccCCCcchhHHHH---HHHHHHHHHHHHHHHH
Q psy8546 66 RNGCPFNGWYMSTEIGCRDLCDTKRAVKFTSKLFGRALSRRIKATVLYATETGKSELYAKK---LGELAVKFTSKLFGRA 142 (177)
Q Consensus 66 ~~~~P~nw~wm~ppIs~rnf~d~~ry~~lts~lfhk~ma~rlkptilYqtet~ks~~wk~k---eln~AVl~S~kl~~~a 142 (177)
..+||||||||++|||+|||+|..|||+++ .+++.|+ +++. ..+++|||+ |||.||+|||+..|+.
T Consensus 235 y~aaPFNGWYMgTEIGaRNl~D~~RYn~L~--~vA~~mG--Ldt~-------~~~sLWkDrAlvElN~AVLhSF~~~gVt 303 (375)
T 2flq_A 235 YMAAPFNGWYMGTEIGARNFADDYRYNMLP--KVASCMG--LDTN-------SNASLWKDKALVELNIAVLYSYKKAGVS 303 (375)
T ss_dssp ESCCCEECCCBTHHHHHTTTTCTTTTCCHH--HHHHHTT--CCSS-------CGGGCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ccCCCcccceeeehhhhhhcccchhhHHHH--HHHHHhC--ccCC-------CchhhhHHHHHHHHHHHHHHHHhhCCce
Confidence 578999999999999999999999999999 6688898 4442 468999995 9999999999999999
Q ss_pred hhcceeE
Q psy8546 143 LSRRIKA 149 (177)
Q Consensus 143 ~~~rVka 149 (177)
+.+..-|
T Consensus 304 ivDHHta 310 (375)
T 2flq_A 304 IVDHHTA 310 (375)
T ss_dssp CBCHHHH
T ss_pred eeccccc
Confidence 8887654
No 13
>1d0c_A Bovine endothelial nitric oxide synthase heme DOM; alpha-beta fold, oxidoreductase; HET: HEM INE; 1.65A {Bos taurus} SCOP: d.174.1.1 PDB: 1d0o_A* 1d1v_A* 1d1w_A* 1d1x_A* 1d1y_A* 1dm6_A* 1dm7_A* 1dm8_A* 1dmi_A* 1dmj_A* 1dmk_A* 1ed4_A* 1ed5_A* 1ed6_A* 1foi_A* 1foj_A* 1fol_A* 1foo_A* 1fop_A* 1nse_A* ...
Probab=99.58 E-value=1.6e-16 Score=144.27 Aligned_cols=73 Identities=33% Similarity=0.507 Sum_probs=64.2
Q ss_pred cCCCCccceEeeccccccchhhhhhhhhhhhHHHHHhhccccccccccccCCCcchhHHHH---HHHHHHHHHHHHHHHH
Q psy8546 66 RNGCPFNGWYMSTEIGCRDLCDTKRAVKFTSKLFGRALSRRIKATVLYATETGKSELYAKK---LGELAVKFTSKLFGRA 142 (177)
Q Consensus 66 ~~~~P~nw~wm~ppIs~rnf~d~~ry~~lts~lfhk~ma~rlkptilYqtet~ks~~wk~k---eln~AVl~S~kl~~~a 142 (177)
+.+||||||||++|||+|||+|..|||+++ .+++.|+ +++. ..+++|||+ |||.||+|||+..|+.
T Consensus 312 y~aaPFNGWYMgTEIGaRNl~D~~RYN~L~--~VA~~mG--LdT~-------~~~sLWkDrAlVElN~AVLhSF~~~gVt 380 (444)
T 1d0c_A 312 FSAAPFSGWYMSTEIGTRNLCDPHRYNILE--DVAVCMD--LDTR-------TTSSLWKDKAAVEINLAVLHSFQLAKVT 380 (444)
T ss_dssp ESCCCEECCEEHHHHHTHHHHSTTTTCCHH--HHHHHTT--CCTT-------CGGGCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cccCCcccceeeehhhhhhcccchhhhHHH--HHHHHhC--cccC-------CchhhhhHHHHHHHHHHHHHHHhhCCce
Confidence 578999999999999999999999999999 6688898 4443 468999996 9999999999999999
Q ss_pred hhcceeE
Q psy8546 143 LSRRIKA 149 (177)
Q Consensus 143 ~~~rVka 149 (177)
+.+..-|
T Consensus 381 IvDHHta 387 (444)
T 1d0c_A 381 IVDHHAA 387 (444)
T ss_dssp EECHHHH
T ss_pred eeccccc
Confidence 8887654
No 14
>2ort_A Nitric oxide synthase, inducible; L-arginine monooxygenase, heme, dimerization, inhibitor, NOS, oxidoreductase; HET: HEM 342; 1.87A {Mus musculus} PDB: 1dd7_A* 2oro_A* 2orq_A* 2orr_A* 2ors_A* 2orp_A* 1nos_A* 1noc_A* 2nos_A* 1df1_A* 1nod_A* 2nod_A* 3nod_A* 3nw2_A* 2bhj_A* 1dwv_A* 1dww_A* 1dwx_A* 1n2n_A* 1qw4_A* ...
Probab=99.57 E-value=1.1e-16 Score=143.67 Aligned_cols=73 Identities=33% Similarity=0.585 Sum_probs=29.6
Q ss_pred cCCCCccceEeeccccccchhhhhhhhhhhhHHHHHhhccccccccccccCCCcchhHHHH---HHHHHHHHHHHHHHHH
Q psy8546 66 RNGCPFNGWYMSTEIGCRDLCDTKRAVKFTSKLFGRALSRRIKATVLYATETGKSELYAKK---LGELAVKFTSKLFGRA 142 (177)
Q Consensus 66 ~~~~P~nw~wm~ppIs~rnf~d~~ry~~lts~lfhk~ma~rlkptilYqtet~ks~~wk~k---eln~AVl~S~kl~~~a 142 (177)
+.+||||||||++|||+|||+|..|||+++ .+++.|+ ++++ ..+++|||+ |||.||+|||+..|+.
T Consensus 245 y~aaPFNGWYMgTEIGaRNl~D~~RYn~L~--~vA~~mG--Ldt~-------~~~sLWkDrAlvElN~AVLhSF~~~gVt 313 (389)
T 2ort_A 245 FPACPFNGWYMGTEIGVRDFCDTQRYNILE--EVGRRMG--LETH-------TLASLWKDRAVTEINVAVLHSFQKQNVT 313 (389)
T ss_dssp ESCCCEECCBCC------------------------------------------------------CCHHHHHHHHTTCC
T ss_pred ccCCCcccceechhhhhhhccCchhhHHHH--HHHHHhC--ccCC-------CchhhhHHHHHHHHHHHHHHHHhhCCce
Confidence 478999999999999999999999999999 6678898 3433 358899995 9999999999999999
Q ss_pred hhcceeE
Q psy8546 143 LSRRIKA 149 (177)
Q Consensus 143 ~~~rVka 149 (177)
+.+..-|
T Consensus 314 ivDHHta 320 (389)
T 2ort_A 314 IMDHHTA 320 (389)
T ss_dssp BCCHHHH
T ss_pred eeccccc
Confidence 8877654
No 15
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=98.85 E-value=2.9e-09 Score=88.74 Aligned_cols=50 Identities=46% Similarity=0.656 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcceeEEEEEecCCcchHHHHHHHHHHhcccc
Q psy8546 126 KLGELAVKFTSKLFGRALSRRIKATVLYATETGKSELYAKKLGELFGHAF 175 (177)
Q Consensus 126 keln~AVl~S~kl~~~a~~~rVkatilyatetg~se~~a~~l~~~f~~~f 175 (177)
|++++||+||.+||+++++++.+++|+|+|+||.+|.+|+.|++.+.+.|
T Consensus 20 ~~~~~av~~~~~l~~~~~~~~~kv~IlYgS~tGnte~~A~~La~~l~~g~ 69 (219)
T 3hr4_A 20 KVLVKAVLFACMLMRKTMASRVRVTILFATETGKSEALAWDLGALFSCAF 69 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCEEEEEEECSSSHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHHHHHHHHHcCC
Confidence 79999999999999999999999999999999999999999999886554
No 16
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=95.78 E-value=0.0063 Score=50.36 Aligned_cols=45 Identities=40% Similarity=0.524 Sum_probs=40.7
Q ss_pred cchhhhhhhhhhhhHHHHHhhccccccccccccCCCcchhHHHHH
Q psy8546 83 RDLCDTKRAVKFTSKLFGRALSRRIKATVLYATETGKSELYAKKL 127 (177)
Q Consensus 83 rnf~d~~ry~~lts~lfhk~ma~rlkptilYqtet~ks~~wk~ke 127 (177)
-.|++++|+|+|++.+|++.|+.+.+..|+|.+.+|.++..+++.
T Consensus 17 ~~~~~~~~av~~~~~l~~~~~~~~~kv~IlYgS~tGnte~~A~~L 61 (219)
T 3hr4_A 17 IPLKVLVKAVLFACMLMRKTMASRVRVTILFATETGKSEALAWDL 61 (219)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECSSSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHHHH
Confidence 368999999999999999999988899999999999999888543
No 17
>2o60_B CAM, peptide corresponding to calmodulin binding domai neuronal nitric oxide synthase; protein-peptide complex, metal binding protein; 1.55A {Gallus gallus}
Probab=95.54 E-value=0.0073 Score=35.07 Aligned_cols=19 Identities=42% Similarity=0.510 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy8546 126 KLGELAVKFTSKLFGRALS 144 (177)
Q Consensus 126 keln~AVl~S~kl~~~a~~ 144 (177)
|++++||+||++||+++|+
T Consensus 8 K~la~AV~fss~Lm~kala 26 (26)
T 2o60_B 8 KKLAEAVKFSAKLMGQXXX 26 (26)
T ss_pred HHHHHHHHHHHHHHhhccC
Confidence 6888999999999998874
No 18
>2o60_B CAM, peptide corresponding to calmodulin binding domai neuronal nitric oxide synthase; protein-peptide complex, metal binding protein; 1.55A {Gallus gallus}
Probab=91.09 E-value=0.091 Score=30.38 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=18.8
Q ss_pred chhhhhhhhhhhhHHHHHhhc
Q psy8546 84 DLCDTKRAVKFTSKLFGRALS 104 (177)
Q Consensus 84 nf~d~~ry~~lts~lfhk~ma 104 (177)
-|++++|+|+|++.+|+++|+
T Consensus 6 ~fK~la~AV~fss~Lm~kala 26 (26)
T 2o60_B 6 GFKKLAEAVKFSAKLMGQXXX 26 (26)
T ss_pred hHHHHHHHHHHHHHHHhhccC
Confidence 389999999999999999874
No 19
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=90.43 E-value=0.21 Score=46.96 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=24.5
Q ss_pred ceeEEEEEecCCcchHHHHHHHHHHhc
Q psy8546 146 RIKATVLYATETGKSELYAKKLGELFG 172 (177)
Q Consensus 146 rVkatilyatetg~se~~a~~l~~~f~ 172 (177)
..+++|+|+|+||.+|.+|+.|++.+.
T Consensus 49 ~~ki~IlY~S~tGnte~~A~~ia~~l~ 75 (682)
T 2bpo_A 49 NKNYLVLYASQTGTAEGFAKAFSKELV 75 (682)
T ss_dssp TCSEEEEEECSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHhH
Confidence 458999999999999999999998775
No 20
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=54.96 E-value=18 Score=30.41 Aligned_cols=26 Identities=23% Similarity=0.091 Sum_probs=23.8
Q ss_pred eeEEEEEecCCcchHHHHHHHHHHhc
Q psy8546 147 IKATVLYATETGKSELYAKKLGELFG 172 (177)
Q Consensus 147 Vkatilyatetg~se~~a~~l~~~f~ 172 (177)
-|..|.|+|.||.++.+|+.+.+.++
T Consensus 257 ~kv~iiy~S~~GnT~~la~~i~~~l~ 282 (414)
T 2q9u_A 257 KKVTVVLDSMYGTTHRMALALLDGAR 282 (414)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHH
Confidence 57899999999999999999998775
No 21
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=49.28 E-value=12 Score=31.23 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.9
Q ss_pred ceeEEEEEecCCcchHHHHHHHHHHhc
Q psy8546 146 RIKATVLYATETGKSELYAKKLGELFG 172 (177)
Q Consensus 146 rVkatilyatetg~se~~a~~l~~~f~ 172 (177)
.-|+.|.|.|.||.++.+|+.+.+.+.
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~ 278 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFR 278 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHH
Confidence 458899999999999999999998764
No 22
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=49.26 E-value=12 Score=31.25 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=25.0
Q ss_pred cceeEEEEEecCCcchHHHHHHHHHHhc
Q psy8546 145 RRIKATVLYATETGKSELYAKKLGELFG 172 (177)
Q Consensus 145 ~rVkatilyatetg~se~~a~~l~~~f~ 172 (177)
+.-+..|.|.|.||.++.+|+.+.+.+.
T Consensus 255 ~~~k~~i~~~S~~gnT~~la~~i~~~l~ 282 (404)
T 2ohh_A 255 VDERVTVIYDTMHGSTRKMAHAIAEGAM 282 (404)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCChHHHHHHHHHHHHHH
Confidence 4468899999999999999999998875
No 23
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=48.14 E-value=12 Score=31.01 Aligned_cols=27 Identities=26% Similarity=0.156 Sum_probs=23.8
Q ss_pred ceeEEEEEecCCcchHHHHHHHHHHhc
Q psy8546 146 RIKATVLYATETGKSELYAKKLGELFG 172 (177)
Q Consensus 146 rVkatilyatetg~se~~a~~l~~~f~ 172 (177)
.-+..|.|+|.||.++.+|+.+.+.+.
T Consensus 251 ~~~i~i~y~S~~GnT~~lA~~ia~~l~ 277 (398)
T 1ycg_A 251 KAKAVIAYDTMWLSTEKMAHALMDGLV 277 (398)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHH
T ss_pred cCeEEEEEECCccHHHHHHHHHHHHHH
Confidence 357899999999999999999988764
No 24
>2wy3_B UL16, uncharacterized protein UL16; immune system-viral protein complex, immune response, innate immunity, structural mimicry; HET: NAG PEU; 1.80A {Human herpesvirus 5 strain AD169}
Probab=37.86 E-value=5.2 Score=31.30 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=14.8
Q ss_pred cccccccccCCcccccccccC
Q psy8546 20 MSTEIGCRDLCDTKRYNICEN 40 (177)
Q Consensus 20 m~tEIg~R~~~d~~ryn~l~~ 40 (177)
-+||| |||.|-+ ||+|..
T Consensus 69 n~t~i--rnfs~~~-~nilq~ 86 (158)
T 2wy3_B 69 NDTVI--RNFSDIT-TNILQD 86 (158)
T ss_dssp TTEEE--ECCSCCT-TEEEEE
T ss_pred CCcEE--eehhhhh-HHHHhc
Confidence 37898 9999865 899987
No 25
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=29.09 E-value=62 Score=28.27 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=27.8
Q ss_pred HHHHHHHhhcceeEEEEEecCCcchHHHHHHHHHHhc
Q psy8546 136 SKLFGRALSRRIKATVLYATETGKSELYAKKLGELFG 172 (177)
Q Consensus 136 ~kl~~~a~~~rVkatilyatetg~se~~a~~l~~~f~ 172 (177)
++.+...-...-+++|.|+|-+|..|..|+.|++-+.
T Consensus 255 Y~~w~~~~~~~~~v~I~Y~S~yGnTe~mA~~ia~gl~ 291 (410)
T 4dik_A 255 YVSVAKGDPKKGKVTVIYDSMYGFVENVMKKAIDSLK 291 (410)
T ss_dssp HHHHHHTCCCTTEEEEEEECSSSHHHHHHHHHHHHHH
T ss_pred HHHhhcccccccceeeEEecccChHHHHHHHHHHHHH
Confidence 3444433334557999999999999999999988664
No 26
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=25.74 E-value=2.4 Score=32.69 Aligned_cols=26 Identities=42% Similarity=0.570 Sum_probs=22.6
Q ss_pred cCCcCccccccccccccCCcccccccccC
Q psy8546 12 AAPFNGWYMSTEIGCRDLCDTKRYNICEN 40 (177)
Q Consensus 12 a~pfngwym~tEIg~R~~~d~~ryn~l~~ 40 (177)
|+|||-|.-|.| .+|.|+.+.+-|++
T Consensus 21 Aa~fNnW~e~A~---EdL~D~~~v~sleE 46 (129)
T 1wlx_A 21 AAPFNNWMESAM---EDLQDMFIVHTIEE 46 (129)
T ss_dssp HHHHHHHHHHHH---HHHHSCCCCCSHHH
T ss_pred hHHHHHHHHhHH---HHhccchhhccHHH
Confidence 789999998876 68889999888877
Done!